Query 048709
Match_columns 203
No_of_seqs 145 out of 1706
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 12:15:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048709.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048709hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 8.4E-41 1.8E-45 232.3 20.3 173 22-194 3-176 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 2.8E-39 6E-44 223.9 17.6 170 26-195 3-172 (200)
3 KOG0078 GTP-binding protein SE 100.0 3.9E-38 8.5E-43 222.0 21.5 170 23-192 7-176 (207)
4 cd04120 Rab12 Rab12 subfamily. 100.0 5.5E-37 1.2E-41 223.5 23.4 164 29-192 1-165 (202)
5 KOG0098 GTPase Rab2, small G p 100.0 2E-37 4.2E-42 213.3 18.6 170 25-194 3-172 (216)
6 cd04121 Rab40 Rab40 subfamily. 100.0 1.3E-36 2.7E-41 219.6 23.9 167 26-193 4-170 (189)
7 KOG0080 GTPase Rab18, small G 100.0 1.1E-37 2.4E-42 209.5 16.8 169 24-192 7-176 (209)
8 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 2.1E-37 4.5E-42 214.7 18.2 168 27-194 21-189 (221)
9 cd04122 Rab14 Rab14 subfamily. 100.0 2.1E-35 4.5E-40 209.9 23.4 164 28-191 2-165 (166)
10 cd01867 Rab8_Rab10_Rab13_like 100.0 3.5E-35 7.5E-40 209.0 23.3 165 27-191 2-166 (167)
11 KOG0087 GTPase Rab11/YPT3, sma 100.0 5.9E-36 1.3E-40 210.2 18.1 172 22-193 8-179 (222)
12 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 6.8E-35 1.5E-39 213.4 22.8 166 29-194 1-172 (201)
13 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 7.3E-35 1.6E-39 208.2 22.2 164 28-192 2-166 (172)
14 cd01865 Rab3 Rab3 subfamily. 100.0 1.4E-34 3E-39 205.5 23.3 163 29-191 2-164 (165)
15 KOG0093 GTPase Rab3, small G p 100.0 1.4E-35 3.1E-40 196.5 16.8 178 20-197 13-190 (193)
16 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 1.4E-34 3E-39 214.3 24.0 169 24-194 9-192 (232)
17 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 7.1E-35 1.5E-39 209.5 21.8 163 26-190 3-180 (182)
18 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.5E-34 3.2E-39 205.5 23.2 163 28-190 2-164 (166)
19 cd04117 Rab15 Rab15 subfamily. 100.0 1E-34 2.2E-39 205.4 22.1 160 29-188 1-160 (161)
20 KOG0394 Ras-related GTPase [Ge 100.0 1.8E-35 3.8E-40 203.3 17.1 170 25-194 6-182 (210)
21 cd01868 Rab11_like Rab11-like. 100.0 2.8E-34 6.2E-39 203.8 23.2 163 27-189 2-164 (165)
22 cd04119 RJL RJL (RabJ-Like) su 100.0 2.6E-34 5.6E-39 204.3 22.5 162 29-190 1-167 (168)
23 cd04127 Rab27A Rab27a subfamil 100.0 2.6E-34 5.7E-39 206.8 22.8 165 27-191 3-178 (180)
24 cd04133 Rop_like Rop subfamily 100.0 1.3E-34 2.9E-39 207.0 20.6 160 29-190 2-173 (176)
25 cd01866 Rab2 Rab2 subfamily. 100.0 6E-34 1.3E-38 202.8 23.8 166 26-191 2-167 (168)
26 PLN03110 Rab GTPase; Provision 100.0 6.1E-34 1.3E-38 210.3 24.6 169 25-193 9-177 (216)
27 PF00071 Ras: Ras family; Int 100.0 3.7E-34 8E-39 202.6 22.4 161 30-190 1-161 (162)
28 KOG0086 GTPase Rab4, small G p 100.0 4.9E-35 1.1E-39 195.3 16.3 172 21-192 2-173 (214)
29 KOG0079 GTP-binding protein H- 100.0 1.9E-35 4.1E-40 196.1 13.7 168 25-193 5-172 (198)
30 cd04110 Rab35 Rab35 subfamily. 100.0 9.2E-34 2E-38 207.0 24.1 169 26-195 4-172 (199)
31 cd04131 Rnd Rnd subfamily. Th 100.0 3.1E-34 6.7E-39 205.7 21.0 160 29-190 2-176 (178)
32 cd04112 Rab26 Rab26 subfamily. 100.0 6.8E-34 1.5E-38 206.5 22.7 165 29-193 1-166 (191)
33 cd04128 Spg1 Spg1p. Spg1p (se 100.0 5.5E-34 1.2E-38 205.2 22.0 165 29-194 1-170 (182)
34 cd01864 Rab19 Rab19 subfamily. 100.0 8.4E-34 1.8E-38 201.5 22.6 162 27-188 2-164 (165)
35 cd04125 RabA_like RabA-like su 100.0 1.2E-33 2.7E-38 204.7 23.4 164 29-192 1-164 (188)
36 cd04136 Rap_like Rap-like subf 100.0 5E-34 1.1E-38 202.0 20.9 160 29-189 2-162 (163)
37 cd04113 Rab4 Rab4 subfamily. 100.0 1.1E-33 2.4E-38 200.0 21.9 160 29-188 1-160 (161)
38 cd04109 Rab28 Rab28 subfamily. 100.0 1.1E-33 2.5E-38 208.9 22.8 164 29-192 1-168 (215)
39 cd01875 RhoG RhoG subfamily. 100.0 1.1E-33 2.3E-38 205.4 22.3 163 28-192 3-179 (191)
40 PTZ00369 Ras-like protein; Pro 100.0 1.1E-33 2.4E-38 205.1 22.3 165 27-192 4-169 (189)
41 cd04175 Rap1 Rap1 subgroup. T 100.0 9.7E-34 2.1E-38 200.9 21.1 162 28-190 1-163 (164)
42 cd04144 Ras2 Ras2 subfamily. 100.0 1.3E-33 2.7E-38 205.0 21.8 169 30-199 1-172 (190)
43 cd04111 Rab39 Rab39 subfamily. 100.0 1.7E-33 3.6E-38 207.2 22.7 167 28-194 2-170 (211)
44 PLN03071 GTP-binding nuclear p 100.0 2.2E-33 4.7E-38 207.6 22.7 165 26-193 11-175 (219)
45 smart00175 RAB Rab subfamily o 100.0 3.9E-33 8.5E-38 197.6 23.0 163 29-191 1-163 (164)
46 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 3.9E-33 8.5E-38 198.9 22.9 163 30-192 2-167 (170)
47 PLN03108 Rab family protein; P 100.0 7.2E-33 1.6E-37 203.8 24.2 167 26-192 4-170 (210)
48 cd04106 Rab23_lke Rab23-like s 100.0 4.2E-33 9.2E-38 197.1 21.8 159 29-188 1-161 (162)
49 cd01860 Rab5_related Rab5-rela 100.0 7.8E-33 1.7E-37 196.0 22.9 162 28-189 1-162 (163)
50 cd01874 Cdc42 Cdc42 subfamily. 100.0 2.7E-33 5.9E-38 200.6 20.6 160 28-189 1-174 (175)
51 KOG0091 GTPase Rab39, small G 100.0 4.4E-34 9.6E-39 192.7 15.2 170 26-195 6-178 (213)
52 cd04176 Rap2 Rap2 subgroup. T 100.0 3.7E-33 8.1E-38 197.7 20.8 161 28-189 1-162 (163)
53 cd04116 Rab9 Rab9 subfamily. 100.0 9.2E-33 2E-37 197.0 22.7 162 26-188 3-169 (170)
54 cd01861 Rab6 Rab6 subfamily. 100.0 7.3E-33 1.6E-37 195.7 22.0 160 29-188 1-160 (161)
55 cd00877 Ran Ran (Ras-related n 100.0 6.2E-33 1.3E-37 197.2 21.5 160 29-191 1-160 (166)
56 smart00173 RAS Ras subfamily o 100.0 6E-33 1.3E-37 196.8 21.4 161 29-190 1-162 (164)
57 cd04115 Rab33B_Rab33A Rab33B/R 100.0 1.1E-32 2.4E-37 196.7 22.1 162 28-189 2-168 (170)
58 cd04124 RabL2 RabL2 subfamily. 100.0 1.3E-32 2.9E-37 194.6 22.0 160 29-192 1-160 (161)
59 cd04126 Rab20 Rab20 subfamily. 100.0 8.9E-33 1.9E-37 203.5 21.7 159 29-192 1-192 (220)
60 cd04140 ARHI_like ARHI subfami 100.0 1E-32 2.2E-37 195.9 21.2 159 29-188 2-163 (165)
61 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.4E-32 3.1E-37 194.2 21.6 160 28-189 1-161 (162)
62 cd04145 M_R_Ras_like M-Ras/R-R 100.0 1.4E-32 3.1E-37 194.8 21.7 161 28-189 2-163 (164)
63 KOG0095 GTPase Rab30, small G 100.0 1.6E-33 3.6E-38 187.4 15.1 169 25-193 4-172 (213)
64 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 2.2E-32 4.8E-37 201.6 22.7 164 29-194 2-180 (222)
65 cd01871 Rac1_like Rac1-like su 100.0 2.6E-32 5.5E-37 195.4 20.7 158 29-188 2-173 (174)
66 cd04123 Rab21 Rab21 subfamily. 100.0 7.9E-32 1.7E-36 190.4 22.8 161 29-189 1-161 (162)
67 cd04101 RabL4 RabL4 (Rab-like4 100.0 9.5E-32 2.1E-36 190.6 22.1 160 29-189 1-163 (164)
68 cd04134 Rho3 Rho3 subfamily. 100.0 4.3E-32 9.2E-37 196.8 20.6 163 29-193 1-177 (189)
69 cd04118 Rab24 Rab24 subfamily. 100.0 1.2E-31 2.7E-36 195.0 23.1 165 29-194 1-170 (193)
70 cd04142 RRP22 RRP22 subfamily. 100.0 4.6E-32 9.9E-37 197.5 20.8 164 29-192 1-176 (198)
71 cd01863 Rab18 Rab18 subfamily. 100.0 9.9E-32 2.2E-36 190.0 21.9 159 29-188 1-160 (161)
72 cd04132 Rho4_like Rho4-like su 100.0 8E-32 1.7E-36 195.1 21.8 165 29-195 1-172 (187)
73 cd01862 Rab7 Rab7 subfamily. 100.0 1.8E-31 3.9E-36 190.5 23.0 165 29-193 1-170 (172)
74 PLN03118 Rab family protein; P 100.0 2.6E-31 5.6E-36 195.8 23.8 167 25-192 11-179 (211)
75 smart00176 RAN Ran (Ras-relate 100.0 1E-31 2.2E-36 195.5 21.2 156 34-192 1-156 (200)
76 cd00154 Rab Rab family. Rab G 100.0 1.8E-31 4E-36 187.5 21.4 158 29-186 1-158 (159)
77 cd04177 RSR1 RSR1 subgroup. R 100.0 1.8E-31 3.9E-36 190.0 21.5 161 29-190 2-164 (168)
78 cd04143 Rhes_like Rhes_like su 100.0 2.1E-31 4.6E-36 199.7 21.9 161 29-190 1-171 (247)
79 KOG0097 GTPase Rab14, small G 100.0 1E-31 2.2E-36 177.5 17.2 172 21-192 4-175 (215)
80 KOG0088 GTPase Rab21, small G 100.0 6.9E-33 1.5E-37 186.0 11.8 170 25-194 10-179 (218)
81 cd01892 Miro2 Miro2 subfamily. 100.0 1.3E-31 2.7E-36 191.0 19.0 163 26-190 2-166 (169)
82 KOG0081 GTPase Rab27, small G 100.0 1.9E-33 4.1E-38 188.9 8.7 169 24-192 5-183 (219)
83 cd04114 Rab30 Rab30 subfamily. 100.0 9E-31 1.9E-35 186.5 23.0 163 27-189 6-168 (169)
84 cd04146 RERG_RasL11_like RERG/ 100.0 2.6E-31 5.7E-36 188.6 19.3 160 30-190 1-164 (165)
85 cd01873 RhoBTB RhoBTB subfamil 100.0 2.9E-31 6.2E-36 192.7 19.8 158 28-188 2-194 (195)
86 cd04148 RGK RGK subfamily. Th 100.0 5.7E-31 1.2E-35 195.0 21.7 161 29-191 1-164 (221)
87 cd04103 Centaurin_gamma Centau 100.0 3.8E-31 8.2E-36 186.3 19.7 153 29-188 1-157 (158)
88 smart00174 RHO Rho (Ras homolo 100.0 3.6E-31 7.9E-36 189.4 19.7 158 31-190 1-172 (174)
89 cd04135 Tc10 TC10 subfamily. 100.0 1E-30 2.2E-35 187.1 19.9 159 29-189 1-173 (174)
90 cd04139 RalA_RalB RalA/RalB su 100.0 3.4E-30 7.5E-35 182.4 22.1 161 29-190 1-162 (164)
91 cd04130 Wrch_1 Wrch-1 subfamil 100.0 1.6E-30 3.6E-35 186.0 20.4 157 29-187 1-171 (173)
92 cd00876 Ras Ras family. The R 100.0 3.3E-30 7.2E-35 181.7 20.6 158 30-188 1-159 (160)
93 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 2.7E-30 5.9E-35 186.4 20.2 164 28-194 3-174 (183)
94 cd04149 Arf6 Arf6 subfamily. 100.0 1.3E-30 2.8E-35 185.5 17.9 154 27-187 8-167 (168)
95 cd04137 RheB Rheb (Ras Homolog 100.0 1.4E-29 3.1E-34 182.1 22.5 165 29-194 2-167 (180)
96 PLN00223 ADP-ribosylation fact 100.0 4.3E-30 9.2E-35 184.9 19.3 159 26-191 15-179 (181)
97 cd04150 Arf1_5_like Arf1-Arf5- 100.0 4.9E-30 1.1E-34 181.1 18.4 152 29-187 1-158 (159)
98 cd04158 ARD1 ARD1 subfamily. 100.0 3.2E-30 6.9E-35 183.8 17.4 156 30-192 1-163 (169)
99 smart00177 ARF ARF-like small 100.0 8.2E-30 1.8E-34 182.6 19.4 156 27-189 12-173 (175)
100 PTZ00133 ADP-ribosylation fact 100.0 1.6E-29 3.5E-34 182.1 19.8 159 27-192 16-180 (182)
101 KOG0083 GTPase Rab26/Rab37, sm 100.0 8.5E-32 1.8E-36 176.0 6.9 162 32-193 1-163 (192)
102 cd04147 Ras_dva Ras-dva subfam 100.0 3E-29 6.5E-34 183.1 21.0 160 30-190 1-163 (198)
103 cd01870 RhoA_like RhoA-like su 100.0 4E-29 8.6E-34 179.0 20.9 159 29-189 2-174 (175)
104 cd04129 Rho2 Rho2 subfamily. 100.0 6.4E-29 1.4E-33 179.8 20.9 166 29-196 2-179 (187)
105 KOG0395 Ras-related GTPase [Ge 100.0 2.8E-29 6.1E-34 181.4 18.8 165 27-192 2-167 (196)
106 cd04154 Arl2 Arl2 subfamily. 100.0 2.8E-29 6.2E-34 179.5 18.7 155 26-187 12-172 (173)
107 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 2.9E-30 6.3E-35 183.1 13.3 153 30-187 1-163 (164)
108 cd00157 Rho Rho (Ras homology) 100.0 6.4E-29 1.4E-33 177.1 20.0 157 29-187 1-170 (171)
109 PTZ00132 GTP-binding nuclear p 100.0 1.7E-28 3.6E-33 181.4 22.8 165 25-192 6-170 (215)
110 cd01893 Miro1 Miro1 subfamily. 100.0 2E-28 4.4E-33 174.0 19.2 160 29-191 1-165 (166)
111 cd04102 RabL3 RabL3 (Rab-like3 100.0 2.8E-28 6.1E-33 177.4 20.2 147 29-175 1-175 (202)
112 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 2.7E-28 5.9E-33 174.6 18.3 153 28-187 15-173 (174)
113 cd04157 Arl6 Arl6 subfamily. 100.0 2.8E-28 6E-33 172.4 17.5 152 30-187 1-161 (162)
114 PF00025 Arf: ADP-ribosylation 100.0 4.7E-28 1E-32 173.3 18.7 157 26-189 12-175 (175)
115 cd04156 ARLTS1 ARLTS1 subfamil 100.0 3.3E-28 7.1E-33 171.8 16.1 152 30-187 1-159 (160)
116 cd04160 Arfrp1 Arfrp1 subfamil 100.0 6.2E-28 1.4E-32 171.5 17.6 152 30-187 1-166 (167)
117 cd00879 Sar1 Sar1 subfamily. 100.0 7.9E-28 1.7E-32 174.5 18.2 155 27-188 18-189 (190)
118 KOG4252 GTP-binding protein [S 100.0 4.8E-30 1E-34 175.8 4.8 180 19-199 11-190 (246)
119 cd04161 Arl2l1_Arl13_like Arl2 100.0 1.4E-27 3E-32 169.8 17.6 151 30-187 1-166 (167)
120 cd04151 Arl1 Arl1 subfamily. 100.0 1.4E-27 3E-32 168.3 17.1 151 30-187 1-157 (158)
121 smart00178 SAR Sar1p-like memb 100.0 1.8E-27 4E-32 171.8 17.9 155 27-188 16-183 (184)
122 cd00878 Arf_Arl Arf (ADP-ribos 100.0 2.9E-27 6.4E-32 166.6 18.3 151 30-187 1-157 (158)
123 PTZ00099 rab6; Provisional 100.0 2E-26 4.4E-31 164.7 20.2 143 51-193 3-145 (176)
124 KOG0393 Ras-related small GTPa 100.0 5.9E-28 1.3E-32 171.2 11.7 165 27-193 3-182 (198)
125 KOG0073 GTP-binding ADP-ribosy 100.0 2.3E-26 5E-31 155.5 18.2 159 26-191 14-179 (185)
126 cd04159 Arl10_like Arl10-like 100.0 3.4E-26 7.4E-31 160.7 19.3 152 30-187 1-158 (159)
127 PLN00023 GTP-binding protein; 99.9 3.9E-26 8.4E-31 174.1 19.3 140 26-165 19-189 (334)
128 cd01897 NOG NOG1 is a nucleola 99.9 6.1E-26 1.3E-30 161.4 16.9 156 29-189 1-167 (168)
129 cd01890 LepA LepA subfamily. 99.9 7E-26 1.5E-30 162.7 16.8 154 30-189 2-176 (179)
130 cd04155 Arl3 Arl3 subfamily. 99.9 1.8E-25 3.8E-30 159.8 18.5 155 26-187 12-172 (173)
131 cd01898 Obg Obg subfamily. Th 99.9 4.4E-26 9.5E-31 162.4 15.2 157 30-188 2-169 (170)
132 cd01878 HflX HflX subfamily. 99.9 7.1E-26 1.5E-30 166.1 15.8 157 26-189 39-204 (204)
133 PRK12299 obgE GTPase CgtA; Rev 99.9 1.9E-25 4.2E-30 173.7 18.8 162 29-191 159-329 (335)
134 TIGR00231 small_GTP small GTP- 99.9 6.9E-25 1.5E-29 153.7 18.8 158 28-186 1-160 (161)
135 cd04171 SelB SelB subfamily. 99.9 4.6E-25 1E-29 156.1 17.0 152 29-187 1-163 (164)
136 KOG0070 GTP-binding ADP-ribosy 99.9 3.4E-25 7.4E-30 153.4 14.2 160 25-191 14-179 (181)
137 COG1100 GTPase SAR1 and relate 99.9 1E-23 2.2E-28 156.2 20.4 165 29-193 6-188 (219)
138 PF02421 FeoB_N: Ferrous iron 99.9 5.2E-25 1.1E-29 152.5 12.4 148 29-185 1-156 (156)
139 TIGR02528 EutP ethanolamine ut 99.9 5.7E-25 1.2E-29 152.3 12.7 134 30-186 2-141 (142)
140 PRK04213 GTP-binding protein; 99.9 4.3E-25 9.3E-30 161.6 12.3 156 26-194 7-196 (201)
141 cd00882 Ras_like_GTPase Ras-li 99.9 8.7E-24 1.9E-28 146.8 18.3 153 33-186 1-156 (157)
142 TIGR03156 GTP_HflX GTP-binding 99.9 4.7E-24 1E-28 167.2 18.0 154 27-188 188-350 (351)
143 KOG0075 GTP-binding ADP-ribosy 99.9 5.4E-25 1.2E-29 146.2 10.7 157 28-190 20-182 (186)
144 TIGR02729 Obg_CgtA Obg family 99.9 6.3E-24 1.4E-28 165.1 18.2 159 29-189 158-328 (329)
145 cd01879 FeoB Ferrous iron tran 99.9 6.3E-24 1.4E-28 149.4 16.4 148 33-189 1-156 (158)
146 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 6.8E-24 1.5E-28 150.7 16.7 157 30-190 2-166 (168)
147 PRK03003 GTP-binding protein D 99.9 9.6E-24 2.1E-28 172.2 17.2 183 4-192 181-384 (472)
148 KOG0071 GTP-binding ADP-ribosy 99.9 1.7E-23 3.7E-28 138.1 14.6 156 27-189 16-177 (180)
149 TIGR00436 era GTP-binding prot 99.9 1.6E-23 3.6E-28 159.6 16.3 155 30-191 2-165 (270)
150 cd01891 TypA_BipA TypA (tyrosi 99.9 2E-23 4.3E-28 152.0 14.8 148 29-180 3-172 (194)
151 cd01881 Obg_like The Obg-like 99.9 1.2E-23 2.6E-28 150.5 13.3 155 33-188 1-175 (176)
152 cd04164 trmE TrmE (MnmE, ThdF, 99.9 4.5E-23 9.8E-28 144.7 14.6 146 29-189 2-156 (157)
153 PRK12297 obgE GTPase CgtA; Rev 99.9 1.9E-22 4.1E-27 160.7 19.8 158 30-192 160-329 (424)
154 PF08477 Miro: Miro-like prote 99.9 4.9E-23 1.1E-27 138.4 13.3 114 30-144 1-119 (119)
155 cd00881 GTP_translation_factor 99.9 8E-23 1.7E-27 147.8 15.3 154 30-189 1-186 (189)
156 TIGR03594 GTPase_EngA ribosome 99.9 6.4E-23 1.4E-27 166.1 16.1 182 4-192 142-346 (429)
157 PRK15494 era GTPase Era; Provi 99.9 7.5E-23 1.6E-27 160.2 15.8 156 26-191 50-217 (339)
158 TIGR00450 mnmE_trmE_thdF tRNA 99.9 2.1E-22 4.5E-27 162.1 18.3 154 26-193 201-363 (442)
159 cd01889 SelB_euk SelB subfamil 99.9 1.3E-22 2.8E-27 147.5 15.4 159 29-191 1-187 (192)
160 PRK11058 GTPase HflX; Provisio 99.9 3E-22 6.4E-27 160.4 18.6 157 29-191 198-363 (426)
161 PRK03003 GTP-binding protein D 99.9 1.1E-22 2.4E-27 166.0 16.2 156 26-191 36-200 (472)
162 PRK12296 obgE GTPase CgtA; Rev 99.9 3.3E-22 7.2E-27 161.3 18.5 164 28-194 159-344 (500)
163 PRK05291 trmE tRNA modificatio 99.9 1.5E-22 3.3E-27 163.7 16.1 149 27-191 214-371 (449)
164 PRK15467 ethanolamine utilizat 99.9 1.8E-22 3.9E-27 142.1 14.4 140 30-192 3-149 (158)
165 PRK00454 engB GTP-binding prot 99.9 6E-22 1.3E-26 144.3 16.6 164 20-190 16-194 (196)
166 cd01894 EngA1 EngA1 subfamily. 99.9 1.3E-22 2.8E-27 142.4 12.7 146 32-188 1-156 (157)
167 PRK12298 obgE GTPase CgtA; Rev 99.9 8.1E-22 1.7E-26 156.3 18.3 160 30-191 161-334 (390)
168 KOG3883 Ras family small GTPas 99.9 1.3E-21 2.7E-26 131.2 16.2 172 27-199 8-185 (198)
169 TIGR01393 lepA GTP-binding pro 99.9 5.7E-22 1.2E-26 164.8 17.8 159 28-192 3-182 (595)
170 cd04163 Era Era subfamily. Er 99.9 9.9E-22 2.1E-26 138.9 15.5 156 28-188 3-167 (168)
171 KOG1673 Ras GTPases [General f 99.9 1.9E-22 4.2E-27 135.4 11.0 167 27-194 19-190 (205)
172 TIGR03598 GTPase_YsxC ribosome 99.9 7.8E-22 1.7E-26 141.8 14.5 150 23-179 13-179 (179)
173 PRK00089 era GTPase Era; Revie 99.9 1.1E-21 2.5E-26 151.3 16.2 159 28-191 5-172 (292)
174 TIGR00487 IF-2 translation ini 99.9 1.6E-21 3.4E-26 161.5 17.7 151 26-187 85-247 (587)
175 cd01895 EngA2 EngA2 subfamily. 99.9 5.1E-21 1.1E-25 136.3 17.7 155 28-188 2-173 (174)
176 COG1159 Era GTPase [General fu 99.9 1.2E-21 2.6E-26 145.9 14.5 158 28-191 6-173 (298)
177 cd04105 SR_beta Signal recogni 99.9 4.2E-21 9.2E-26 140.4 17.2 117 30-147 2-123 (203)
178 cd01888 eIF2_gamma eIF2-gamma 99.9 1.1E-21 2.5E-26 143.6 13.7 161 29-191 1-200 (203)
179 PRK09518 bifunctional cytidyla 99.9 3.4E-21 7.4E-26 164.0 18.6 181 4-192 418-623 (712)
180 KOG0076 GTP-binding ADP-ribosy 99.9 2.7E-22 5.9E-27 137.1 9.4 161 28-192 17-189 (197)
181 PRK00093 GTP-binding protein D 99.9 2.4E-21 5.2E-26 157.2 16.8 158 27-192 172-346 (435)
182 TIGR00475 selB selenocysteine- 99.9 4.2E-21 9.1E-26 159.5 18.0 156 29-193 1-169 (581)
183 COG1160 Predicted GTPases [Gen 99.9 1.8E-21 3.8E-26 152.5 14.1 184 3-192 146-353 (444)
184 CHL00189 infB translation init 99.9 6.9E-21 1.5E-25 160.1 17.2 154 26-189 242-409 (742)
185 TIGR00437 feoB ferrous iron tr 99.9 7E-21 1.5E-25 158.4 16.1 146 35-189 1-154 (591)
186 PRK00093 GTP-binding protein D 99.9 1.8E-20 3.9E-25 152.1 17.9 147 29-188 2-160 (435)
187 PF00009 GTP_EFTU: Elongation 99.9 2.7E-21 5.8E-26 140.0 11.6 159 28-190 3-187 (188)
188 PRK05306 infB translation init 99.9 1.4E-20 3E-25 159.5 17.5 152 25-188 287-450 (787)
189 cd00880 Era_like Era (E. coli 99.9 5.9E-21 1.3E-25 133.8 12.7 151 33-188 1-162 (163)
190 COG2229 Predicted GTPase [Gene 99.9 4.9E-20 1.1E-24 127.7 16.8 156 27-188 9-176 (187)
191 TIGR03594 GTPase_EngA ribosome 99.9 1.7E-20 3.7E-25 152.0 15.1 151 30-191 1-161 (429)
192 PRK05433 GTP-binding protein L 99.9 3.6E-20 7.9E-25 154.2 17.3 160 27-192 6-186 (600)
193 cd01896 DRG The developmentall 99.9 1E-19 2.2E-24 135.7 17.7 151 30-189 2-225 (233)
194 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 5.4E-21 1.2E-25 132.6 9.2 162 27-191 9-170 (216)
195 PRK09518 bifunctional cytidyla 99.8 6.3E-20 1.4E-24 156.3 17.4 155 27-191 274-437 (712)
196 PRK09554 feoB ferrous iron tra 99.8 8.9E-20 1.9E-24 155.2 18.2 153 28-189 3-167 (772)
197 KOG0074 GTP-binding ADP-ribosy 99.8 2.8E-20 6.1E-25 123.1 10.8 161 21-187 10-176 (185)
198 KOG0072 GTP-binding ADP-ribosy 99.8 1.1E-20 2.4E-25 125.4 8.8 158 27-191 17-180 (182)
199 cd01876 YihA_EngB The YihA (En 99.8 1.2E-19 2.6E-24 128.6 14.8 150 30-188 1-169 (170)
200 TIGR00491 aIF-2 translation in 99.8 3.3E-19 7.1E-24 147.6 18.3 157 28-191 4-217 (590)
201 COG2262 HflX GTPases [General 99.8 4.7E-19 1E-23 137.1 17.2 159 26-191 190-357 (411)
202 COG1160 Predicted GTPases [Gen 99.8 1.1E-19 2.3E-24 142.6 13.3 152 29-190 4-165 (444)
203 PF10662 PduV-EutP: Ethanolami 99.8 2.8E-19 6.1E-24 121.3 12.9 135 30-186 3-142 (143)
204 COG0486 ThdF Predicted GTPase 99.8 2.6E-19 5.7E-24 140.8 14.3 156 25-192 214-378 (454)
205 TIGR00483 EF-1_alpha translati 99.8 2.5E-19 5.4E-24 144.8 13.9 152 26-181 5-198 (426)
206 cd04166 CysN_ATPS CysN_ATPS su 99.8 2E-19 4.2E-24 132.2 11.9 146 30-180 1-184 (208)
207 COG0218 Predicted GTPase [Gene 99.8 2E-18 4.3E-23 122.3 16.1 163 22-191 18-198 (200)
208 PRK10218 GTP-binding protein; 99.8 1.5E-18 3.3E-23 144.1 17.9 161 28-192 5-197 (607)
209 cd01884 EF_Tu EF-Tu subfamily. 99.8 1.7E-18 3.7E-23 125.6 16.0 147 28-178 2-171 (195)
210 PRK04004 translation initiatio 99.8 2E-18 4.4E-23 143.4 18.5 156 27-189 5-217 (586)
211 TIGR03680 eif2g_arch translati 99.8 5.7E-19 1.2E-23 141.6 14.0 162 27-190 3-196 (406)
212 PRK12317 elongation factor 1-a 99.8 3.1E-19 6.8E-24 144.3 12.6 154 27-182 5-197 (425)
213 PRK04000 translation initiatio 99.8 8.7E-19 1.9E-23 140.5 14.7 161 25-191 6-202 (411)
214 TIGR01394 TypA_BipA GTP-bindin 99.8 8.1E-19 1.8E-23 145.8 14.8 160 29-192 2-193 (594)
215 KOG4423 GTP-binding protein-li 99.8 1.9E-21 4.1E-26 134.4 -1.4 172 23-194 20-198 (229)
216 PRK10512 selenocysteinyl-tRNA- 99.8 3.7E-18 7.9E-23 142.5 17.6 154 30-191 2-167 (614)
217 cd04168 TetM_like Tet(M)-like 99.8 3.1E-18 6.7E-23 127.9 15.3 114 30-147 1-130 (237)
218 KOG1423 Ras-like GTPase ERA [C 99.8 2.8E-18 6.1E-23 127.8 14.7 162 25-190 69-271 (379)
219 KOG1489 Predicted GTP-binding 99.8 3.6E-18 7.8E-23 127.8 13.7 155 29-187 197-364 (366)
220 COG0370 FeoB Fe2+ transport sy 99.8 6.3E-18 1.4E-22 138.3 15.7 155 28-191 3-165 (653)
221 COG1084 Predicted GTPase [Gene 99.8 1.1E-17 2.4E-22 126.0 15.6 171 15-191 155-337 (346)
222 cd01883 EF1_alpha Eukaryotic e 99.8 3E-18 6.5E-23 126.9 12.2 148 30-179 1-194 (219)
223 cd04167 Snu114p Snu114p subfam 99.8 3.5E-18 7.6E-23 126.1 12.5 113 30-146 2-136 (213)
224 cd04104 p47_IIGP_like p47 (47- 99.8 1.5E-17 3.1E-22 121.3 15.0 162 28-196 1-190 (197)
225 PRK12736 elongation factor Tu; 99.8 2.9E-17 6.4E-22 131.3 16.0 161 26-190 10-201 (394)
226 PRK12735 elongation factor Tu; 99.8 4.6E-17 1E-21 130.3 15.3 161 26-190 10-203 (396)
227 cd01885 EF2 EF2 (for archaea a 99.8 2.8E-17 6.2E-22 121.2 12.9 113 30-146 2-138 (222)
228 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 1.6E-17 3.5E-22 122.5 11.5 160 30-192 1-178 (232)
229 cd01850 CDC_Septin CDC/Septin. 99.8 4.4E-17 9.5E-22 124.2 14.2 142 27-173 3-185 (276)
230 TIGR00485 EF-Tu translation el 99.8 5.3E-17 1.1E-21 130.0 15.3 147 26-176 10-179 (394)
231 cd04169 RF3 RF3 subfamily. Pe 99.7 1.1E-16 2.3E-21 121.5 15.8 115 29-147 3-137 (267)
232 KOG1707 Predicted Ras related/ 99.7 1.2E-17 2.5E-22 133.8 10.8 172 26-199 7-184 (625)
233 CHL00071 tufA elongation facto 99.7 8.5E-17 1.8E-21 129.3 15.9 149 25-177 9-180 (409)
234 cd04165 GTPBP1_like GTPBP1-lik 99.7 1.1E-16 2.4E-21 118.5 15.3 153 30-186 1-219 (224)
235 COG3596 Predicted GTPase [Gene 99.7 1.6E-17 3.5E-22 122.5 9.3 175 15-193 26-225 (296)
236 COG0536 Obg Predicted GTPase [ 99.7 9.3E-17 2E-21 121.6 13.1 163 30-193 161-336 (369)
237 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 5E-16 1.1E-20 113.2 15.3 159 29-191 1-185 (196)
238 KOG0077 Vesicle coat complex C 99.7 6.5E-17 1.4E-21 110.1 9.6 153 28-187 20-190 (193)
239 PRK09866 hypothetical protein; 99.7 1.8E-16 3.9E-21 129.7 13.4 108 78-187 231-350 (741)
240 COG1163 DRG Predicted GTPase [ 99.7 5.7E-16 1.2E-20 116.6 14.4 156 27-191 62-290 (365)
241 cd01899 Ygr210 Ygr210 subfamil 99.7 8.2E-16 1.8E-20 119.0 15.7 81 31-111 1-110 (318)
242 PF01926 MMR_HSR1: 50S ribosom 99.7 1.3E-15 2.9E-20 101.7 14.8 105 30-142 1-116 (116)
243 PRK00741 prfC peptide chain re 99.7 7.2E-16 1.6E-20 126.8 15.2 118 26-147 8-145 (526)
244 cd04170 EF-G_bact Elongation f 99.7 6.9E-16 1.5E-20 117.7 14.1 112 30-147 1-130 (268)
245 KOG1191 Mitochondrial GTPase [ 99.7 1.4E-16 3E-21 125.6 10.4 168 25-194 265-454 (531)
246 PLN03126 Elongation factor Tu; 99.7 1.3E-15 2.7E-20 123.9 16.1 148 26-177 79-249 (478)
247 PRK00049 elongation factor Tu; 99.7 1.7E-15 3.7E-20 121.2 16.7 160 26-189 10-202 (396)
248 PRK05124 cysN sulfate adenylyl 99.7 5.2E-16 1.1E-20 126.5 13.9 153 26-181 25-216 (474)
249 cd01886 EF-G Elongation factor 99.7 3.1E-16 6.8E-21 119.1 11.8 112 30-147 1-130 (270)
250 TIGR02034 CysN sulfate adenyly 99.7 5.5E-16 1.2E-20 124.4 13.4 149 29-180 1-187 (406)
251 COG0532 InfB Translation initi 99.7 4.5E-15 9.7E-20 118.7 17.7 156 27-192 4-172 (509)
252 PLN00043 elongation factor 1-a 99.7 1.2E-15 2.5E-20 123.5 14.0 150 27-180 6-203 (447)
253 PRK13351 elongation factor G; 99.7 1.8E-15 4E-20 129.0 15.8 116 26-147 6-139 (687)
254 PRK05506 bifunctional sulfate 99.7 1.8E-15 3.9E-20 127.8 14.3 153 25-180 21-211 (632)
255 PTZ00141 elongation factor 1- 99.7 2.1E-15 4.6E-20 122.1 14.1 151 27-180 6-203 (446)
256 KOG0462 Elongation factor-type 99.7 1.8E-15 3.8E-20 120.7 12.8 163 24-193 56-238 (650)
257 PF09439 SRPRB: Signal recogni 99.7 4.9E-16 1.1E-20 110.1 8.4 124 29-158 4-135 (181)
258 PLN03127 Elongation factor Tu; 99.7 5.9E-15 1.3E-19 119.4 15.1 162 25-190 58-252 (447)
259 PTZ00327 eukaryotic translatio 99.6 5.1E-15 1.1E-19 119.7 14.3 165 25-191 31-234 (460)
260 COG4917 EutP Ethanolamine util 99.6 2.8E-15 6.2E-20 97.5 9.2 136 30-187 3-143 (148)
261 COG0481 LepA Membrane GTPase L 99.6 8.5E-15 1.9E-19 115.2 13.5 162 26-194 7-190 (603)
262 PRK09602 translation-associate 99.6 2.7E-14 5.9E-19 113.7 16.4 83 29-111 2-113 (396)
263 PRK12739 elongation factor G; 99.6 1.9E-14 4.1E-19 122.6 16.2 117 25-147 5-139 (691)
264 TIGR00991 3a0901s02IAP34 GTP-b 99.6 1.3E-14 2.9E-19 110.5 12.4 136 15-152 25-172 (313)
265 TIGR00484 EF-G translation elo 99.6 1.7E-14 3.6E-19 123.0 14.5 118 24-147 6-141 (689)
266 KOG1490 GTP-binding protein CR 99.6 4.7E-15 1E-19 117.3 10.0 175 15-192 155-343 (620)
267 KOG1145 Mitochondrial translat 99.6 9.1E-14 2E-18 111.1 16.8 154 26-190 151-316 (683)
268 TIGR00503 prfC peptide chain r 99.6 2.4E-14 5.1E-19 117.9 14.0 118 26-147 9-146 (527)
269 KOG0090 Signal recognition par 99.6 2.4E-14 5.1E-19 101.8 11.9 152 29-188 39-237 (238)
270 cd00066 G-alpha G protein alph 99.6 5.2E-14 1.1E-18 109.5 14.6 118 76-193 160-314 (317)
271 PRK00007 elongation factor G; 99.6 1E-13 2.2E-18 118.2 16.6 117 25-147 7-141 (693)
272 cd01853 Toc34_like Toc34-like 99.6 2.2E-14 4.8E-19 107.6 10.7 131 14-147 17-163 (249)
273 PRK12740 elongation factor G; 99.6 1.5E-13 3.2E-18 117.2 15.3 108 34-147 1-126 (668)
274 PRK13768 GTPase; Provisional 99.6 6.2E-14 1.4E-18 105.8 11.3 111 78-190 98-247 (253)
275 KOG1532 GTPase XAB1, interacts 99.6 6.1E-14 1.3E-18 103.5 10.7 168 24-193 15-267 (366)
276 smart00275 G_alpha G protein a 99.5 2.5E-13 5.5E-18 106.5 14.7 117 77-193 184-337 (342)
277 PF04548 AIG1: AIG1 family; I 99.5 9.9E-14 2.2E-18 102.2 11.5 160 29-192 1-188 (212)
278 COG5256 TEF1 Translation elong 99.5 8.3E-14 1.8E-18 108.3 11.0 152 27-180 6-201 (428)
279 PF05049 IIGP: Interferon-indu 99.5 9.1E-15 2E-19 114.2 5.4 175 14-195 21-223 (376)
280 PTZ00258 GTP-binding protein; 99.5 4.7E-13 1E-17 105.7 14.9 88 24-111 17-126 (390)
281 KOG3905 Dynein light intermedi 99.5 5.2E-13 1.1E-17 100.8 13.3 164 26-192 50-292 (473)
282 PRK14845 translation initiatio 99.5 1E-12 2.3E-17 114.5 16.8 145 39-190 472-673 (1049)
283 PRK09435 membrane ATPase/prote 99.5 2E-13 4.4E-18 105.9 10.9 106 76-192 148-262 (332)
284 TIGR00101 ureG urease accessor 99.5 1.2E-12 2.5E-17 95.4 13.4 102 77-189 92-195 (199)
285 TIGR00490 aEF-2 translation el 99.5 1.8E-13 4E-18 117.0 10.5 118 26-147 17-152 (720)
286 KOG1707 Predicted Ras related/ 99.5 2.4E-12 5.2E-17 103.7 14.0 171 20-196 417-589 (625)
287 PRK09601 GTP-binding protein Y 99.5 6E-12 1.3E-16 98.5 15.9 83 29-111 3-107 (364)
288 TIGR02836 spore_IV_A stage IV 99.4 8.7E-12 1.9E-16 97.9 16.0 143 26-173 15-218 (492)
289 PF05783 DLIC: Dynein light in 99.4 4.2E-12 9.1E-17 102.7 14.4 165 25-192 22-266 (472)
290 cd01882 BMS1 Bms1. Bms1 is an 99.4 5.2E-12 1.1E-16 93.8 13.6 141 25-177 36-183 (225)
291 PF03029 ATP_bind_1: Conserved 99.4 5.8E-14 1.3E-18 104.7 2.8 109 78-188 92-235 (238)
292 PF00350 Dynamin_N: Dynamin fa 99.4 1.4E-12 3.1E-17 92.6 9.5 110 31-143 1-168 (168)
293 KOG0082 G-protein alpha subuni 99.4 3.7E-12 7.9E-17 98.5 12.2 118 76-193 194-347 (354)
294 smart00010 small_GTPase Small 99.4 1.2E-12 2.6E-17 88.1 8.4 114 29-179 1-115 (124)
295 TIGR00157 ribosome small subun 99.4 1E-12 2.3E-17 98.6 8.6 96 88-187 24-120 (245)
296 COG5257 GCD11 Translation init 99.4 1.4E-12 3.1E-17 98.3 9.0 166 26-193 8-205 (415)
297 PRK07560 elongation factor EF- 99.4 2.2E-12 4.8E-17 110.7 11.1 118 25-146 17-152 (731)
298 PF00735 Septin: Septin; Inte 99.4 7.6E-12 1.6E-16 95.5 11.9 141 27-172 3-183 (281)
299 PLN00116 translation elongatio 99.4 5.2E-12 1.1E-16 109.8 11.3 118 25-146 16-163 (843)
300 TIGR00073 hypB hydrogenase acc 99.4 7E-12 1.5E-16 92.1 10.1 151 27-188 21-205 (207)
301 PTZ00416 elongation factor 2; 99.4 6.7E-12 1.4E-16 108.9 11.2 117 26-146 17-157 (836)
302 PF03308 ArgK: ArgK protein; 99.4 1.1E-12 2.5E-17 96.9 5.5 154 27-192 28-232 (266)
303 COG2895 CysN GTPases - Sulfate 99.4 2.3E-11 5E-16 93.0 12.5 152 26-180 4-193 (431)
304 TIGR00750 lao LAO/AO transport 99.3 1.7E-11 3.6E-16 94.9 11.4 102 76-190 126-238 (300)
305 TIGR00993 3a0901s04IAP86 chlor 99.3 3.7E-11 7.9E-16 99.4 13.5 123 23-147 113-250 (763)
306 KOG1144 Translation initiation 99.3 1.4E-11 3E-16 101.8 10.7 158 28-192 475-689 (1064)
307 KOG0410 Predicted GTP binding 99.3 3.4E-12 7.4E-17 96.4 6.6 156 25-192 175-343 (410)
308 COG1703 ArgK Putative periplas 99.3 1.4E-11 2.9E-16 92.5 9.6 167 16-194 39-258 (323)
309 COG0012 Predicted GTPase, prob 99.3 1.6E-10 3.5E-15 89.5 15.3 84 28-111 2-108 (372)
310 COG1217 TypA Predicted membran 99.3 3.8E-11 8.2E-16 94.8 11.8 162 28-193 5-198 (603)
311 KOG3886 GTP-binding protein [S 99.3 1.3E-11 2.8E-16 89.1 7.3 147 27-175 3-164 (295)
312 KOG0461 Selenocysteine-specifi 99.2 2.2E-10 4.8E-15 87.5 12.8 162 26-194 5-197 (522)
313 smart00053 DYNc Dynamin, GTPas 99.2 2.4E-10 5.1E-15 85.2 11.8 118 27-147 25-206 (240)
314 KOG0458 Elongation factor 1 al 99.2 1.1E-10 2.5E-15 94.3 10.6 152 27-180 176-372 (603)
315 COG0378 HypB Ni2+-binding GTPa 99.2 1.2E-10 2.7E-15 82.4 9.3 77 103-189 120-200 (202)
316 COG5019 CDC3 Septin family pro 99.2 4.3E-10 9.3E-15 86.7 12.7 139 26-169 21-200 (373)
317 cd01900 YchF YchF subfamily. 99.2 6.4E-11 1.4E-15 89.9 8.0 81 31-111 1-103 (274)
318 KOG2655 Septin family protein 99.2 1.4E-09 3.1E-14 84.4 13.7 143 27-174 20-201 (366)
319 KOG3887 Predicted small GTPase 99.2 6.4E-10 1.4E-14 81.1 10.7 163 27-192 26-204 (347)
320 KOG0705 GTPase-activating prot 99.1 1.8E-10 4E-15 92.5 8.5 166 25-197 27-196 (749)
321 COG3276 SelB Selenocysteine-sp 99.1 6.4E-10 1.4E-14 87.5 11.2 153 30-190 2-162 (447)
322 KOG1486 GTP-binding protein DR 99.1 2.3E-09 5E-14 78.7 13.3 155 27-190 61-288 (364)
323 COG0480 FusA Translation elong 99.1 1E-09 2.2E-14 92.8 12.7 119 25-147 7-142 (697)
324 PF00503 G-alpha: G-protein al 99.1 6.4E-10 1.4E-14 89.3 10.8 113 77-189 236-389 (389)
325 KOG1547 Septin CDC10 and relat 99.1 3.7E-09 7.9E-14 77.1 11.6 155 26-185 44-238 (336)
326 COG4108 PrfC Peptide chain rel 99.1 2.5E-09 5.4E-14 84.1 11.5 130 27-162 11-160 (528)
327 PRK10463 hydrogenase nickel in 99.1 7.3E-10 1.6E-14 84.2 8.1 55 134-188 231-287 (290)
328 cd01855 YqeH YqeH. YqeH is an 99.1 2.1E-09 4.5E-14 77.9 10.0 94 90-190 24-125 (190)
329 cd01859 MJ1464 MJ1464. This f 99.0 1.9E-09 4E-14 75.7 8.7 96 90-191 2-97 (156)
330 COG0050 TufB GTPases - transla 99.0 1.7E-09 3.7E-14 81.1 8.4 139 27-174 11-177 (394)
331 KOG0468 U5 snRNP-specific prot 99.0 2.4E-09 5.2E-14 88.0 9.0 118 25-146 125-262 (971)
332 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 1.4E-09 3E-14 75.0 6.5 54 30-87 85-138 (141)
333 cd04178 Nucleostemin_like Nucl 99.0 1.6E-09 3.5E-14 77.1 6.7 57 26-86 115-171 (172)
334 cd01858 NGP_1 NGP-1. Autoanti 99.0 2.2E-09 4.8E-14 75.4 7.1 56 27-86 101-156 (157)
335 KOG0085 G protein subunit Galp 99.0 5.6E-10 1.2E-14 81.0 3.5 126 72-197 194-356 (359)
336 PRK12289 GTPase RsgA; Reviewed 98.9 5.4E-09 1.2E-13 82.3 9.0 92 92-188 81-173 (352)
337 cd01855 YqeH YqeH. YqeH is an 98.9 9.7E-10 2.1E-14 79.7 4.1 74 6-86 109-189 (190)
338 cd01859 MJ1464 MJ1464. This f 98.9 2.2E-09 4.8E-14 75.3 5.0 75 7-86 81-155 (156)
339 cd01854 YjeQ_engC YjeQ/EngC. 98.9 9.1E-09 2E-13 79.2 8.7 88 95-187 73-161 (287)
340 KOG1491 Predicted GTP-binding 98.9 7.4E-09 1.6E-13 79.1 7.8 86 26-111 18-125 (391)
341 TIGR03596 GTPase_YlqF ribosome 98.9 2.1E-09 4.5E-14 82.4 4.6 58 26-87 116-173 (276)
342 KOG2486 Predicted GTPase [Gene 98.9 6.4E-09 1.4E-13 77.4 6.8 155 24-187 132-313 (320)
343 TIGR00092 GTP-binding protein 98.9 1.2E-08 2.6E-13 80.2 8.5 83 29-111 3-108 (368)
344 KOG0099 G protein subunit Galp 98.9 7.6E-09 1.6E-13 76.4 6.6 122 76-197 201-376 (379)
345 COG5192 BMS1 GTP-binding prote 98.8 5.2E-08 1.1E-12 79.3 11.5 144 18-174 59-210 (1077)
346 PRK12288 GTPase RsgA; Reviewed 98.8 2.3E-08 5.1E-13 78.7 9.0 88 98-188 118-206 (347)
347 PRK00098 GTPase RsgA; Reviewed 98.8 1.7E-08 3.8E-13 78.1 8.1 86 97-186 77-163 (298)
348 PRK09563 rbgA GTPase YlqF; Rev 98.8 1.7E-08 3.7E-13 77.7 7.9 58 26-87 119-176 (287)
349 TIGR03597 GTPase_YqeH ribosome 98.8 3.2E-08 7E-13 78.5 9.5 95 87-188 50-151 (360)
350 KOG0448 Mitofusin 1 GTPase, in 98.8 1.3E-07 2.9E-12 78.2 13.1 144 26-173 107-309 (749)
351 cd01856 YlqF YlqF. Proteins o 98.8 1.8E-08 3.9E-13 71.8 6.9 58 26-87 113-170 (171)
352 PF09547 Spore_IV_A: Stage IV 98.8 1.8E-07 3.9E-12 73.9 12.7 159 27-191 16-235 (492)
353 cd01849 YlqF_related_GTPase Yl 98.8 8.9E-09 1.9E-13 72.2 4.8 56 26-86 98-154 (155)
354 COG1161 Predicted GTPases [Gen 98.7 2.6E-08 5.6E-13 77.8 6.4 59 27-89 131-189 (322)
355 cd01858 NGP_1 NGP-1. Autoanti 98.7 9.6E-08 2.1E-12 67.1 7.4 88 97-189 5-94 (157)
356 KOG1143 Predicted translation 98.7 1.4E-07 3.1E-12 73.2 8.8 167 18-189 156-386 (591)
357 KOG1954 Endocytosis/signaling 98.7 2.2E-07 4.7E-12 72.1 9.8 120 25-147 55-225 (532)
358 PF03193 DUF258: Protein of un 98.6 3.1E-08 6.8E-13 69.1 4.1 60 29-91 36-101 (161)
359 TIGR03348 VI_IcmF type VI secr 98.6 2.1E-07 4.6E-12 84.0 10.4 114 29-147 112-257 (1169)
360 COG5258 GTPBP1 GTPase [General 98.6 5.6E-07 1.2E-11 70.2 11.0 162 25-191 114-339 (527)
361 KOG0466 Translation initiation 98.6 2.6E-08 5.7E-13 75.2 3.5 162 25-192 35-243 (466)
362 cd01851 GBP Guanylate-binding 98.6 9E-07 1.9E-11 65.8 11.6 86 27-112 6-103 (224)
363 cd01849 YlqF_related_GTPase Yl 98.6 2.1E-07 4.6E-12 65.2 7.8 84 102-189 1-84 (155)
364 PRK14974 cell division protein 98.6 6.4E-07 1.4E-11 70.2 10.8 95 77-184 223-324 (336)
365 PRK10416 signal recognition pa 98.6 4.7E-07 1E-11 70.6 9.7 96 76-184 196-304 (318)
366 cd03112 CobW_like The function 98.6 6.2E-07 1.3E-11 63.0 9.0 63 77-145 87-158 (158)
367 PRK12289 GTPase RsgA; Reviewed 98.6 1.2E-07 2.6E-12 74.8 5.7 23 31-53 175-197 (352)
368 COG1618 Predicted nucleotide k 98.6 1.4E-05 3.1E-10 55.2 14.9 146 27-189 4-175 (179)
369 TIGR00064 ftsY signal recognit 98.6 1.9E-06 4E-11 65.9 11.8 96 76-184 154-262 (272)
370 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 2.9E-07 6.3E-12 63.4 6.8 76 95-176 6-83 (141)
371 PRK12288 GTPase RsgA; Reviewed 98.5 1.1E-07 2.4E-12 74.9 5.1 58 31-91 208-271 (347)
372 KOG1424 Predicted GTP-binding 98.5 1.1E-07 2.4E-12 76.4 4.9 57 28-88 314-370 (562)
373 cd01856 YlqF YlqF. Proteins o 98.5 6E-07 1.3E-11 64.0 7.8 89 94-190 13-101 (171)
374 KOG1487 GTP-binding protein DR 98.5 5.6E-07 1.2E-11 66.7 7.2 84 29-114 60-150 (358)
375 KOG0464 Elongation factor G [T 98.5 2.4E-07 5.3E-12 72.9 5.6 128 16-147 25-168 (753)
376 KOG0460 Mitochondrial translat 98.5 1.9E-06 4E-11 66.3 9.8 139 27-173 53-218 (449)
377 TIGR01425 SRP54_euk signal rec 98.5 3.3E-06 7.1E-11 68.0 11.6 134 28-171 100-273 (429)
378 KOG0467 Translation elongation 98.5 8E-07 1.7E-11 74.5 8.3 116 23-145 4-136 (887)
379 TIGR03596 GTPase_YlqF ribosome 98.5 1.2E-06 2.6E-11 67.2 8.8 90 94-191 15-104 (276)
380 PRK13796 GTPase YqeH; Provisio 98.5 2.7E-07 5.8E-12 73.5 5.1 57 29-88 161-221 (365)
381 PRK13796 GTPase YqeH; Provisio 98.4 2.3E-06 5.1E-11 68.1 10.3 94 88-188 57-157 (365)
382 KOG4273 Uncharacterized conser 98.4 6.7E-06 1.4E-10 60.8 10.5 161 28-190 4-222 (418)
383 KOG3859 Septins (P-loop GTPase 98.4 2.2E-06 4.8E-11 64.2 8.1 118 26-147 40-190 (406)
384 TIGR03597 GTPase_YqeH ribosome 98.4 8.4E-07 1.8E-11 70.5 6.4 58 29-89 155-216 (360)
385 PF00448 SRP54: SRP54-type pro 98.4 6.8E-06 1.5E-10 59.8 10.6 85 77-172 84-175 (196)
386 KOG1534 Putative transcription 98.4 1.3E-06 2.8E-11 62.9 6.5 80 78-159 99-188 (273)
387 PRK09563 rbgA GTPase YlqF; Rev 98.4 2.3E-06 5E-11 66.0 8.5 91 94-192 18-108 (287)
388 KOG0447 Dynamin-like GTP bindi 98.4 4.7E-05 1E-09 62.3 16.0 96 78-175 413-526 (980)
389 PRK01889 GTPase RsgA; Reviewed 98.4 2E-06 4.4E-11 68.2 8.4 84 98-186 110-193 (356)
390 TIGR00157 ribosome small subun 98.4 9.6E-07 2.1E-11 66.5 6.0 24 29-52 121-144 (245)
391 COG1162 Predicted GTPases [Gen 98.4 7E-07 1.5E-11 68.0 5.2 59 30-91 166-230 (301)
392 COG0523 Putative GTPases (G3E 98.3 1.3E-05 2.8E-10 62.6 11.1 88 77-172 85-184 (323)
393 cd03110 Fer4_NifH_child This p 98.3 4.2E-05 9.2E-10 54.8 13.0 86 75-169 91-176 (179)
394 cd03114 ArgK-like The function 98.3 5.6E-06 1.2E-10 57.5 7.8 58 76-144 91-148 (148)
395 cd03115 SRP The signal recogni 98.3 8.1E-06 1.8E-10 58.2 8.9 84 76-169 82-171 (173)
396 PRK14722 flhF flagellar biosyn 98.2 2.3E-05 5E-10 62.2 11.5 141 28-172 137-316 (374)
397 PRK12727 flagellar biosynthesi 98.2 2.4E-05 5.2E-10 64.5 11.5 133 28-172 350-519 (559)
398 cd01854 YjeQ_engC YjeQ/EngC. 98.2 3.1E-06 6.8E-11 65.2 6.1 59 29-90 162-226 (287)
399 PRK11889 flhF flagellar biosyn 98.2 3.1E-05 6.7E-10 61.6 11.5 86 77-172 321-412 (436)
400 PRK14721 flhF flagellar biosyn 98.2 5.5E-06 1.2E-10 66.7 7.0 139 27-178 190-365 (420)
401 PRK00771 signal recognition pa 98.2 4.5E-06 9.8E-11 67.7 6.5 86 77-172 176-267 (437)
402 PRK00098 GTPase RsgA; Reviewed 98.2 3.6E-06 7.8E-11 65.3 5.7 25 29-53 165-189 (298)
403 KOG0463 GTP-binding protein GP 98.2 1.3E-05 2.9E-10 62.6 8.6 158 27-189 132-356 (641)
404 PRK11537 putative GTP-binding 98.2 4.5E-05 9.7E-10 59.6 11.7 85 77-171 91-186 (318)
405 COG3523 IcmF Type VI protein s 98.1 7.3E-06 1.6E-10 73.0 7.5 114 30-147 127-270 (1188)
406 KOG0465 Mitochondrial elongati 98.1 6.2E-06 1.3E-10 67.8 6.5 117 26-146 37-169 (721)
407 KOG2484 GTPase [General functi 98.1 2.2E-06 4.7E-11 67.1 3.4 58 26-87 250-307 (435)
408 COG1419 FlhF Flagellar GTP-bin 98.1 5.7E-05 1.2E-09 59.9 11.2 134 28-171 203-372 (407)
409 PRK10867 signal recognition pa 98.1 7.1E-05 1.5E-09 60.7 11.8 87 76-172 183-275 (433)
410 TIGR00959 ffh signal recogniti 98.1 1.8E-05 3.9E-10 64.1 8.2 87 76-172 182-274 (428)
411 COG3640 CooC CO dehydrogenase 98.1 1.9E-05 4E-10 58.0 7.0 63 96-167 151-213 (255)
412 COG1162 Predicted GTPases [Gen 98.1 3.8E-05 8.1E-10 58.8 8.8 91 95-188 74-165 (301)
413 PRK13695 putative NTPase; Prov 98.1 0.00015 3.3E-09 51.7 11.6 22 29-50 1-22 (174)
414 PRK12726 flagellar biosynthesi 98.0 0.0001 2.3E-09 58.4 11.1 86 77-172 286-377 (407)
415 PRK05703 flhF flagellar biosyn 98.0 0.00014 2.9E-09 59.2 12.1 85 77-172 300-392 (424)
416 PRK12724 flagellar biosynthesi 98.0 1.5E-05 3.2E-10 64.0 6.1 134 28-172 223-394 (432)
417 cd02038 FleN-like FleN is a me 98.0 3.8E-05 8.3E-10 52.7 7.2 106 33-146 5-110 (139)
418 cd02042 ParA ParA and ParB of 98.0 6.6E-05 1.4E-09 48.7 8.0 82 31-124 2-84 (104)
419 PF03266 NTPase_1: NTPase; In 98.0 4.2E-05 9.1E-10 54.2 7.4 134 30-178 1-163 (168)
420 PF02492 cobW: CobW/HypB/UreG, 98.0 1.1E-05 2.3E-10 57.9 4.1 80 77-162 85-169 (178)
421 cd03111 CpaE_like This protein 97.9 8.6E-05 1.9E-09 48.5 8.0 103 31-142 2-106 (106)
422 PRK06731 flhF flagellar biosyn 97.9 0.0003 6.6E-09 53.6 11.5 85 76-171 154-245 (270)
423 PRK06995 flhF flagellar biosyn 97.9 0.00018 3.9E-09 59.1 10.8 89 77-178 335-430 (484)
424 KOG2485 Conserved ATP/GTP bind 97.9 1.8E-05 3.9E-10 60.3 4.6 62 25-87 140-206 (335)
425 PRK14723 flhF flagellar biosyn 97.9 0.00012 2.5E-09 63.1 9.6 140 29-178 186-362 (767)
426 cd01983 Fer4_NifH The Fer4_Nif 97.8 0.00024 5.1E-09 45.0 8.5 69 31-113 2-71 (99)
427 KOG2423 Nucleolar GTPase [Gene 97.8 2E-05 4.3E-10 62.0 3.7 84 26-116 305-390 (572)
428 PRK12723 flagellar biosynthesi 97.8 0.00024 5.2E-09 56.9 9.9 91 76-178 254-351 (388)
429 KOG0459 Polypeptide release fa 97.8 2.4E-05 5.2E-10 61.6 4.1 156 27-183 78-279 (501)
430 KOG1533 Predicted GTPase [Gene 97.8 2.6E-05 5.6E-10 57.2 3.9 69 77-147 97-177 (290)
431 TIGR02475 CobW cobalamin biosy 97.8 0.00043 9.2E-09 54.8 10.9 98 77-183 93-223 (341)
432 PF13207 AAA_17: AAA domain; P 97.7 3.1E-05 6.8E-10 51.6 3.0 22 30-51 1-22 (121)
433 PF06858 NOG1: Nucleolar GTP-b 97.7 0.00027 5.8E-09 40.2 6.1 47 97-144 10-58 (58)
434 KOG0780 Signal recognition par 97.7 6.4E-05 1.4E-09 59.0 4.8 50 75-124 182-237 (483)
435 PF11111 CENP-M: Centromere pr 97.7 0.0032 7E-08 44.3 12.7 140 25-189 12-152 (176)
436 PF13555 AAA_29: P-loop contai 97.7 4.7E-05 1E-09 44.3 3.0 21 30-50 25-45 (62)
437 COG1126 GlnQ ABC-type polar am 97.7 5.3E-05 1.1E-09 55.1 3.5 25 29-53 29-53 (240)
438 cd02036 MinD Bacterial cell di 97.6 0.0024 5.1E-08 45.4 12.0 84 78-168 64-147 (179)
439 PRK07261 topology modulation p 97.6 4.4E-05 9.6E-10 54.3 3.0 22 29-50 1-22 (171)
440 PRK08118 topology modulation p 97.6 5E-05 1.1E-09 53.9 3.1 23 29-51 2-24 (167)
441 COG0563 Adk Adenylate kinase a 97.6 5E-05 1.1E-09 54.3 2.9 23 29-51 1-23 (178)
442 cd03222 ABC_RNaseL_inhibitor T 97.6 0.0021 4.6E-08 46.0 11.2 25 28-52 25-49 (177)
443 PF07015 VirC1: VirC1 protein; 97.6 0.0014 3E-08 48.5 10.2 103 76-183 83-187 (231)
444 cd00009 AAA The AAA+ (ATPases 97.6 0.00083 1.8E-08 45.7 8.8 25 28-52 19-43 (151)
445 COG1116 TauB ABC-type nitrate/ 97.6 7.4E-05 1.6E-09 55.5 3.5 24 30-53 31-54 (248)
446 PF13671 AAA_33: AAA domain; P 97.6 6.1E-05 1.3E-09 51.7 2.9 20 31-50 2-21 (143)
447 PF13521 AAA_28: AAA domain; P 97.5 6.2E-05 1.4E-09 53.1 2.5 22 30-51 1-22 (163)
448 PF00005 ABC_tran: ABC transpo 97.5 8.6E-05 1.9E-09 50.6 3.1 24 29-52 12-35 (137)
449 COG1136 SalX ABC-type antimicr 97.5 0.0001 2.2E-09 54.4 3.5 24 30-53 33-56 (226)
450 KOG0469 Elongation factor 2 [T 97.5 0.00024 5.2E-09 57.8 5.8 130 27-160 18-178 (842)
451 cd02019 NK Nucleoside/nucleoti 97.5 0.00011 2.5E-09 43.9 2.9 21 31-51 2-22 (69)
452 COG0194 Gmk Guanylate kinase [ 97.5 5.3E-05 1.1E-09 53.8 1.5 25 28-52 4-28 (191)
453 cd01131 PilT Pilus retraction 97.4 0.00082 1.8E-08 49.0 7.6 21 31-51 4-24 (198)
454 KOG1970 Checkpoint RAD17-RFC c 97.4 0.0019 4.1E-08 53.2 10.1 86 103-188 196-282 (634)
455 COG0541 Ffh Signal recognition 97.4 0.00036 7.8E-09 55.8 5.9 65 76-146 182-252 (451)
456 PRK10751 molybdopterin-guanine 97.4 0.0006 1.3E-08 48.4 6.5 24 28-51 6-29 (173)
457 PF04665 Pox_A32: Poxvirus A32 97.4 0.00014 3E-09 54.3 3.1 26 26-51 11-36 (241)
458 PF05621 TniB: Bacterial TniB 97.4 0.0014 3E-08 50.4 8.4 105 24-142 57-189 (302)
459 PF03215 Rad17: Rad17 cell cyc 97.4 0.0021 4.5E-08 53.6 10.1 84 103-189 134-229 (519)
460 PRK06217 hypothetical protein; 97.4 0.00017 3.6E-09 52.0 3.2 23 29-51 2-24 (183)
461 PRK01889 GTPase RsgA; Reviewed 97.4 0.00024 5.3E-09 56.5 4.3 24 29-52 196-219 (356)
462 CHL00072 chlL photochlorophyll 97.3 0.016 3.4E-07 44.9 13.8 115 76-193 115-247 (290)
463 PRK03839 putative kinase; Prov 97.3 0.00019 4E-09 51.5 3.0 22 30-51 2-23 (180)
464 KOG0066 eIF2-interacting prote 97.3 0.004 8.6E-08 50.3 10.3 31 21-51 606-636 (807)
465 PRK14737 gmk guanylate kinase; 97.3 0.0002 4.3E-09 51.7 2.9 24 29-52 5-28 (186)
466 PF13238 AAA_18: AAA domain; P 97.3 0.00021 4.4E-09 48.0 2.8 21 31-51 1-21 (129)
467 cd00820 PEPCK_HprK Phosphoenol 97.3 0.00022 4.8E-09 46.4 2.7 21 29-49 16-36 (107)
468 smart00382 AAA ATPases associa 97.3 0.00026 5.6E-09 47.8 3.2 25 29-53 3-27 (148)
469 PF00004 AAA: ATPase family as 97.3 0.00023 5E-09 47.9 2.9 21 31-51 1-21 (132)
470 cd00071 GMPK Guanosine monopho 97.3 0.00024 5.1E-09 48.7 2.9 21 31-51 2-22 (137)
471 TIGR00235 udk uridine kinase. 97.3 0.00027 5.8E-09 51.9 3.4 25 27-51 5-29 (207)
472 COG3839 MalK ABC-type sugar tr 97.3 0.00027 5.8E-09 55.3 3.5 24 30-53 31-54 (338)
473 PRK10078 ribose 1,5-bisphospho 97.3 0.00026 5.5E-09 51.1 3.2 22 30-51 4-25 (186)
474 COG0552 FtsY Signal recognitio 97.3 0.0033 7.2E-08 48.9 9.3 144 26-182 137-327 (340)
475 COG1120 FepC ABC-type cobalami 97.3 0.00023 4.9E-09 53.6 2.9 22 29-50 29-50 (258)
476 TIGR02322 phosphon_PhnN phosph 97.3 0.00024 5.1E-09 50.9 2.9 22 30-51 3-24 (179)
477 COG3840 ThiQ ABC-type thiamine 97.3 0.00026 5.7E-09 50.3 3.0 25 28-52 25-49 (231)
478 cd01130 VirB11-like_ATPase Typ 97.3 0.00027 5.8E-09 51.0 3.2 24 28-51 25-48 (186)
479 cd02023 UMPK Uridine monophosp 97.3 0.00023 5E-09 51.8 2.8 21 31-51 2-22 (198)
480 PRK14530 adenylate kinase; Pro 97.2 0.00026 5.5E-09 52.4 3.1 22 29-50 4-25 (215)
481 COG3638 ABC-type phosphate/pho 97.2 0.00026 5.6E-09 52.2 2.9 21 30-50 32-52 (258)
482 TIGR01360 aden_kin_iso1 adenyl 97.2 0.00026 5.6E-09 50.9 2.9 21 29-49 4-24 (188)
483 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.2 0.00029 6.3E-09 52.1 3.2 24 29-52 31-54 (218)
484 PRK05480 uridine/cytidine kina 97.2 0.00031 6.7E-09 51.6 3.3 25 27-51 5-29 (209)
485 cd03238 ABC_UvrA The excision 97.2 0.0003 6.5E-09 50.3 3.1 23 27-49 20-42 (176)
486 PRK14738 gmk guanylate kinase; 97.2 0.0005 1.1E-08 50.5 4.3 25 27-51 12-36 (206)
487 PF03205 MobB: Molybdopterin g 97.2 0.00031 6.7E-09 48.3 3.0 22 30-51 2-23 (140)
488 PRK05416 glmZ(sRNA)-inactivati 97.2 0.0057 1.2E-07 47.2 10.1 21 29-49 7-27 (288)
489 TIGR00960 3a0501s02 Type II (G 97.2 0.00032 6.9E-09 51.8 3.2 24 29-52 30-53 (216)
490 COG1117 PstB ABC-type phosphat 97.2 0.00025 5.5E-09 51.6 2.5 21 29-49 34-54 (253)
491 cd03225 ABC_cobalt_CbiO_domain 97.2 0.00033 7E-09 51.5 3.2 24 29-52 28-51 (211)
492 TIGR03263 guanyl_kin guanylate 97.2 0.00031 6.8E-09 50.2 3.0 22 30-51 3-24 (180)
493 cd03292 ABC_FtsE_transporter F 97.2 0.00034 7.4E-09 51.5 3.2 24 29-52 28-51 (214)
494 TIGR01166 cbiO cobalt transpor 97.2 0.00035 7.6E-09 50.5 3.2 23 30-52 20-42 (190)
495 cd03261 ABC_Org_Solvent_Resist 97.2 0.00034 7.3E-09 52.4 3.2 24 29-52 27-50 (235)
496 PRK14531 adenylate kinase; Pro 97.2 0.00033 7.2E-09 50.4 3.0 23 28-50 2-24 (183)
497 TIGR02673 FtsE cell division A 97.2 0.00035 7.5E-09 51.5 3.2 24 29-52 29-52 (214)
498 cd03226 ABC_cobalt_CbiO_domain 97.2 0.00035 7.6E-09 51.2 3.2 24 29-52 27-50 (205)
499 TIGR03608 L_ocin_972_ABC putat 97.2 0.00037 7.9E-09 51.1 3.2 24 29-52 25-48 (206)
500 PRK14532 adenylate kinase; Pro 97.2 0.00034 7.5E-09 50.5 3.0 22 29-50 1-22 (188)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.4e-41 Score=232.29 Aligned_cols=173 Identities=47% Similarity=0.772 Sum_probs=165.9
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCC
Q 048709 22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGA 101 (203)
Q Consensus 22 ~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 101 (203)
....++.+||+|+|.+|+|||+|+.++.++.+...+..|.|+++..+.+.++++.+++++|||+|+++|+++...|++++
T Consensus 3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a 82 (205)
T KOG0084|consen 3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA 82 (205)
T ss_pred CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCe-EEEEecCCCCCHHH
Q 048709 102 LGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDT 180 (203)
Q Consensus 102 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~ 180 (203)
+++|+|||+++.+||..+..|+.++.+....++|.++|+||+|+.+.+.++.++++.|+..++++ ++++||+++.|+++
T Consensus 83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 83 HGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVED 162 (205)
T ss_pred CeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 048709 181 AFFRLLQEIYALSK 194 (203)
Q Consensus 181 ~~~~i~~~~~~~~~ 194 (203)
.|..|...+.....
T Consensus 163 ~F~~la~~lk~~~~ 176 (205)
T KOG0084|consen 163 AFLTLAKELKQRKG 176 (205)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999988876433
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-39 Score=223.91 Aligned_cols=170 Identities=45% Similarity=0.724 Sum_probs=162.5
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
...+||+++|..++|||||+-++..+.+.....+|.+..+.++.+.+++..+++.||||+|+++|+++.+.|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 35699999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709 106 VVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 185 (203)
+|||+++.+||..++.|+..+.+...+++-+.+++||+|+.+.+++..+++..++...+..++++||++|.|++++|..|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence 99999999999999999999999988888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcc
Q 048709 186 LQEIYALSKK 195 (203)
Q Consensus 186 ~~~~~~~~~~ 195 (203)
.+.++.....
T Consensus 163 a~~lp~~~~~ 172 (200)
T KOG0092|consen 163 AEKLPCSDPQ 172 (200)
T ss_pred HHhccCcccc
Confidence 9999875443
No 3
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-38 Score=221.99 Aligned_cols=170 Identities=43% Similarity=0.741 Sum_probs=164.7
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 048709 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGAL 102 (203)
Q Consensus 23 ~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 102 (203)
.+.+..+||+++|.+|||||+++.++....+...+..|.++++..+++..++..+.+++|||+|+++|+.+...|+++++
T Consensus 7 ~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~ 86 (207)
T KOG0078|consen 7 EDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAM 86 (207)
T ss_pred CCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcC
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 048709 103 GAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF 182 (203)
Q Consensus 103 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 182 (203)
++++|||+++..||+++..|+..+.......+|.++|+||+|+..+++++.+...++|..+|++++++||++|.||.+.|
T Consensus 87 gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF 166 (207)
T KOG0078|consen 87 GILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAF 166 (207)
T ss_pred eeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHH
Confidence 99999999999999999999999999998999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 048709 183 FRLLQEIYAL 192 (203)
Q Consensus 183 ~~i~~~~~~~ 192 (203)
..+.+.+...
T Consensus 167 ~~La~~i~~k 176 (207)
T KOG0078|consen 167 LSLARDILQK 176 (207)
T ss_pred HHHHHHHHhh
Confidence 9999998853
No 4
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=5.5e-37 Score=223.49 Aligned_cols=164 Identities=41% Similarity=0.722 Sum_probs=151.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
+.|+++|..|+|||||++++..+.+...+.+|.+.++....+.+++..+.+.+|||+|++.|..++..|++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 47999999999999999999999998888889888888888889999999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHc-CCeEEEEecCCCCCHHHHHHHHHH
Q 048709 109 DITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQ-GLFFSEASALNGDNVDTAFFRLLQ 187 (203)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~~i~~ 187 (203)
|++++++|+.+..|+..+......++|+++|+||+|+...+++..++..+++... ++.+++|||++|.||+++|+++++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999887766678999999999999877788888898898875 789999999999999999999999
Q ss_pred HHHHh
Q 048709 188 EIYAL 192 (203)
Q Consensus 188 ~~~~~ 192 (203)
.+...
T Consensus 161 ~~~~~ 165 (202)
T cd04120 161 DILKK 165 (202)
T ss_pred HHHHh
Confidence 88764
No 5
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-37 Score=213.27 Aligned_cols=170 Identities=51% Similarity=0.795 Sum_probs=163.9
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 104 (203)
+.+.+|++++|..|+|||+|+.+++...+.+.++.|.++++-.+.++++++.+++++|||+|++.|+++...|++++-++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709 105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (203)
Q Consensus 105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 184 (203)
++|||++..++|..+..|+..+.....+++.+++++||+|+...+.+..+|..+||++++..++++||+++.|+++.|..
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n 162 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN 162 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence 99999999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q 048709 185 LLQEIYALSK 194 (203)
Q Consensus 185 i~~~~~~~~~ 194 (203)
+...+++.-+
T Consensus 163 ta~~Iy~~~q 172 (216)
T KOG0098|consen 163 TAKEIYRKIQ 172 (216)
T ss_pred HHHHHHHHHH
Confidence 9999988544
No 6
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.3e-36 Score=219.64 Aligned_cols=167 Identities=34% Similarity=0.595 Sum_probs=153.9
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
+..+||+++|..|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+|||+|++.|..++..+++++|+++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999998888777788888888888888999999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709 106 VVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 185 (203)
+|||++++.+|+.+..|+..+.... ++.|+++|+||.|+...+.+..+++..+++..++++++|||++|.||+++|+++
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l 162 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTEL 162 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999999997654 689999999999998777888999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 048709 186 LQEIYALS 193 (203)
Q Consensus 186 ~~~~~~~~ 193 (203)
++.+....
T Consensus 163 ~~~i~~~~ 170 (189)
T cd04121 163 ARIVLMRH 170 (189)
T ss_pred HHHHHHhc
Confidence 99887643
No 7
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.1e-37 Score=209.46 Aligned_cols=169 Identities=39% Similarity=0.634 Sum_probs=161.3
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (203)
Q Consensus 24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 103 (203)
.....+||+++|.+|+|||||+.++....+++..+.|.++++..+.+.++++.+++-+|||+|+++|+.+.+.|++++.+
T Consensus 7 ~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqG 86 (209)
T KOG0080|consen 7 GYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQG 86 (209)
T ss_pred CcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCce
Confidence 34567999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 048709 104 AVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF 182 (203)
Q Consensus 104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 182 (203)
+|+|||++.+++|..+..|+.++.-++. +++-.++|+||+|..+.+.+..+|..+|++.+++.|++|||++.+|+...|
T Consensus 87 iIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~F 166 (209)
T KOG0080|consen 87 IILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCF 166 (209)
T ss_pred eEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHH
Confidence 9999999999999999999999988887 778889999999998888999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 048709 183 FRLLQEIYAL 192 (203)
Q Consensus 183 ~~i~~~~~~~ 192 (203)
+.++++|.+-
T Consensus 167 eelveKIi~t 176 (209)
T KOG0080|consen 167 EELVEKIIET 176 (209)
T ss_pred HHHHHHHhcC
Confidence 9999999873
No 8
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-37 Score=214.75 Aligned_cols=168 Identities=36% Similarity=0.631 Sum_probs=160.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
..+||+++|..++||||||++++...++..|.+|.|+++...++.+.+..+.+++|||+|+++|+.+.+.|++++.++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhcCC-CCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709 107 VYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (203)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 185 (203)
|||+++..||++..+|++.+.+..+. ++-+++|+||.|+.+.+++..+|....++++++.|+++||+.|.||..+|..|
T Consensus 101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrI 180 (221)
T KOG0094|consen 101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRI 180 (221)
T ss_pred EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHH
Confidence 99999999999999999999988885 58899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q 048709 186 LQEIYALSK 194 (203)
Q Consensus 186 ~~~~~~~~~ 194 (203)
...+.+...
T Consensus 181 aa~l~~~~~ 189 (221)
T KOG0094|consen 181 AAALPGMEV 189 (221)
T ss_pred HHhccCccc
Confidence 988887654
No 9
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=2.1e-35 Score=209.93 Aligned_cols=164 Identities=48% Similarity=0.822 Sum_probs=150.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 107 (203)
.+||+++|++|+|||||++++.++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999998888878888888777788888899999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 048709 108 YDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ 187 (203)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 187 (203)
||++++++++.+..|+..+.....++.|+++|+||+|+.+.+.+..+++.+++...++++++|||++|.|+.++|.++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999887766678999999999999887778888999999999999999999999999999999998
Q ss_pred HHHH
Q 048709 188 EIYA 191 (203)
Q Consensus 188 ~~~~ 191 (203)
.+.+
T Consensus 162 ~~~~ 165 (166)
T cd04122 162 KIYQ 165 (166)
T ss_pred HHhh
Confidence 7753
No 10
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=3.5e-35 Score=209.01 Aligned_cols=165 Identities=45% Similarity=0.772 Sum_probs=151.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
..+||+++|++|+|||||++++.+.++...+.++.+.++....+.+++..+.+.+||+||++.+......+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 56999999999999999999999999988888898888887888888888999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709 107 VYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (203)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 186 (203)
|||+++++++..+..|+..+.+....+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|+++.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 161 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLA 161 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999998877667899999999999987667788888899999999999999999999999999999
Q ss_pred HHHHH
Q 048709 187 QEIYA 191 (203)
Q Consensus 187 ~~~~~ 191 (203)
+.+..
T Consensus 162 ~~~~~ 166 (167)
T cd01867 162 KDIKK 166 (167)
T ss_pred HHHHh
Confidence 98754
No 11
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.9e-36 Score=210.16 Aligned_cols=172 Identities=65% Similarity=1.017 Sum_probs=165.8
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCC
Q 048709 22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGA 101 (203)
Q Consensus 22 ~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 101 (203)
+...++.+||+++|.+++|||-|+.++...++.....+|.++++.+..+.++++.++.+||||+|+++|+....+|++++
T Consensus 8 ~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgA 87 (222)
T KOG0087|consen 8 SEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGA 87 (222)
T ss_pred ccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccc
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Q 048709 102 LGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTA 181 (203)
Q Consensus 102 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 181 (203)
.++++|||++...+|+.+.+|+.+++.....++++++|+||+|+...+.++.++.+.++...+..++++||.++.|+++.
T Consensus 88 vGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~a 167 (222)
T KOG0087|consen 88 VGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKA 167 (222)
T ss_pred ceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHH
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 048709 182 FFRLLQEIYALS 193 (203)
Q Consensus 182 ~~~i~~~~~~~~ 193 (203)
|..++..|+...
T Consensus 168 F~~~l~~I~~~v 179 (222)
T KOG0087|consen 168 FERVLTEIYKIV 179 (222)
T ss_pred HHHHHHHHHHHH
Confidence 999999998753
No 12
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=6.8e-35 Score=213.38 Aligned_cols=166 Identities=36% Similarity=0.649 Sum_probs=149.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC-CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN-SKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 107 (203)
+||+++|.+|||||||+++|.++.+...+.+|.+.++....+.++ +..+.+.+|||||++.+..++..+++++|++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999888888888888887778887 7889999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhc----CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcC-CeEEEEecCCCCCHHHHH
Q 048709 108 YDITKRQSFDHVARGVEELRAHA----DSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQG-LFFSEASALNGDNVDTAF 182 (203)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~ 182 (203)
||++++++++.+..|+..+.... ..++|+++|+||+|+...+.+..+++.+++...+ .+++++||++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999988776532 2678999999999997656788899999999998 689999999999999999
Q ss_pred HHHHHHHHHhhc
Q 048709 183 FRLLQEIYALSK 194 (203)
Q Consensus 183 ~~i~~~~~~~~~ 194 (203)
+++++.+....+
T Consensus 161 ~~l~~~l~~~~~ 172 (201)
T cd04107 161 RFLVKNILANDK 172 (201)
T ss_pred HHHHHHHHHhch
Confidence 999999987654
No 13
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=7.3e-35 Score=208.20 Aligned_cols=164 Identities=29% Similarity=0.413 Sum_probs=146.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 107 (203)
.+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 47999999999999999999999998877777776444 34567788889999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709 108 YDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (203)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 186 (203)
||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+++..++..++++..++++++|||++|.||+++|++++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 999999999999988877766533 6799999999999987777888899999999999999999999999999999999
Q ss_pred HHHHHh
Q 048709 187 QEIYAL 192 (203)
Q Consensus 187 ~~~~~~ 192 (203)
+.+...
T Consensus 161 ~~~~~~ 166 (172)
T cd04141 161 REIRRK 166 (172)
T ss_pred HHHHHh
Confidence 888763
No 14
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=1.4e-34 Score=205.54 Aligned_cols=163 Identities=43% Similarity=0.691 Sum_probs=148.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
+||+++|.+|||||||+++|.+.++...+.++.+.++....+..++..+.+.+|||+|++.+..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999988888788887777777777888899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 048709 109 DITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188 (203)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~ 188 (203)
|++++++++.+..|+..+........|+++|+||+|+.+.+....++..+++...+++++++||++|.|++++|+++++.
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999877665688999999999998766677888888988899999999999999999999999987
Q ss_pred HHH
Q 048709 189 IYA 191 (203)
Q Consensus 189 ~~~ 191 (203)
+.+
T Consensus 162 ~~~ 164 (165)
T cd01865 162 ICD 164 (165)
T ss_pred HHh
Confidence 653
No 15
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-35 Score=196.50 Aligned_cols=178 Identities=40% Similarity=0.660 Sum_probs=166.1
Q ss_pred CCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhc
Q 048709 20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYR 99 (203)
Q Consensus 20 ~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~ 99 (203)
..++.-+..+|++++|...+|||||+.++.+..+.+...+|.|+++..+++....+.+++++|||+|++.|+.+..+|++
T Consensus 13 s~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyR 92 (193)
T KOG0093|consen 13 SIDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYR 92 (193)
T ss_pred cccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhh
Confidence 34455567899999999999999999999999999999999999999999888888899999999999999999999999
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 048709 100 GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVD 179 (203)
Q Consensus 100 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 179 (203)
+++++|++||+++.+||..+..|.-.+...+..+.|+|+++||||+.+++.++.+..+.++...|..+|++||+.+.|++
T Consensus 93 gamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk 172 (193)
T KOG0093|consen 93 GAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVK 172 (193)
T ss_pred ccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHH
Confidence 99999999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccc
Q 048709 180 TAFFRLLQEIYALSKKEL 197 (203)
Q Consensus 180 ~~~~~i~~~~~~~~~~~~ 197 (203)
++|+.++..|-+.....+
T Consensus 173 ~~Fe~lv~~Ic~kmsesl 190 (193)
T KOG0093|consen 173 QVFERLVDIICDKMSESL 190 (193)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 999999999877654433
No 16
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.4e-34 Score=214.30 Aligned_cols=169 Identities=22% Similarity=0.348 Sum_probs=149.6
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (203)
Q Consensus 24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 103 (203)
.....+||+++|.+|+|||||++++..+.+...+.+|.+..+. ..+.+++..+.+.||||+|++.|..+.+.|++++|+
T Consensus 9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~ 87 (232)
T cd04174 9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 87 (232)
T ss_pred CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence 3456799999999999999999999999998888888876654 457788999999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCc------------ccCCCHHHHHHHHHHcCC-eEEE
Q 048709 104 AVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD------------MWAVSAEDVVEFAEDQGL-FFSE 169 (203)
Q Consensus 104 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~ 169 (203)
+++|||++++++|+.+ ..|+..+.... ++.|+++|+||+|+.. .+.+..+++.+++...++ .|++
T Consensus 88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~E 166 (232)
T cd04174 88 VLLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLE 166 (232)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEE
Confidence 9999999999999984 78998887655 5789999999999864 256889999999999998 6999
Q ss_pred EecCCCC-CHHHHHHHHHHHHHHhhc
Q 048709 170 ASALNGD-NVDTAFFRLLQEIYALSK 194 (203)
Q Consensus 170 ~sa~~~~-~i~~~~~~i~~~~~~~~~ 194 (203)
|||++|. ||+++|..++..+.+...
T Consensus 167 tSAktg~~~V~e~F~~~~~~~~~~~~ 192 (232)
T cd04174 167 CSAFTSEKSIHSIFRSASLLCLNKLS 192 (232)
T ss_pred ccCCcCCcCHHHHHHHHHHHHHHhcc
Confidence 9999997 899999999998876433
No 17
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=7.1e-35 Score=209.52 Aligned_cols=163 Identities=28% Similarity=0.447 Sum_probs=145.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
+..+||+++|.+|+|||||++++..+.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.|..+.+.+++++|+++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 4568999999999999999999999999888888887555 456778999999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCc------------ccCCCHHHHHHHHHHcCC-eEEEEe
Q 048709 106 VVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD------------MWAVSAEDVVEFAEDQGL-FFSEAS 171 (203)
Q Consensus 106 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s 171 (203)
+|||++++.+|+.+ ..|+..+.... ++.|+++|+||+|+.+ .+.+..+++.++++..++ +|++||
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 99999999999997 78998887765 6799999999999864 245889999999999995 899999
Q ss_pred cCCCCC-HHHHHHHHHHHHH
Q 048709 172 ALNGDN-VDTAFFRLLQEIY 190 (203)
Q Consensus 172 a~~~~~-i~~~~~~i~~~~~ 190 (203)
|++|.| |+++|..+++.+.
T Consensus 161 Ak~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 161 ALQSENSVRDIFHVATLACV 180 (182)
T ss_pred cCCCCCCHHHHHHHHHHHHh
Confidence 999998 9999999998644
No 18
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=1.5e-34 Score=205.54 Aligned_cols=163 Identities=46% Similarity=0.779 Sum_probs=149.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 107 (203)
.+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+......+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 48999999999999999999999988888778888888888888888889999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 048709 108 YDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ 187 (203)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 187 (203)
||+++++++..+..|+..+......+.|+++++||+|+.....+..+++..++...+++++++||++|.|++++|.++++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999999987766577999999999999877678888999999999999999999999999999999998
Q ss_pred HHH
Q 048709 188 EIY 190 (203)
Q Consensus 188 ~~~ 190 (203)
.+.
T Consensus 162 ~~~ 164 (166)
T cd01869 162 EIK 164 (166)
T ss_pred HHH
Confidence 774
No 19
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=1e-34 Score=205.38 Aligned_cols=160 Identities=41% Similarity=0.692 Sum_probs=147.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
+||+++|++|+|||||++++.++.+.+.+.++.+.++....+.+++..+.+.+||++|++.+..+...+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998888888888888788888888899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 048709 109 DITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188 (203)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~ 188 (203)
|++++++++.+..|+..+......+.|+++|+||.|+...+.+..++...+++..++++++|||++|.|++++|.+|.+.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999998877665679999999999998777788899999999999999999999999999999999864
No 20
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=1.8e-35 Score=203.26 Aligned_cols=170 Identities=32% Similarity=0.588 Sum_probs=157.6
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 104 (203)
....+||+++|.+|+|||||+|++.+.++...+..|.+.++.++.+.+++..+.+++|||+|+++|.++--.+++++|.+
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCcc--cCCCHHHHHHHHHHcC-CeEEEEecCCCCC
Q 048709 105 VVVYDITKRQSFDHVARGVEELRAHAD----SSIRIILIGNKSDLVDM--WAVSAEDVVEFAEDQG-LFFSEASALNGDN 177 (203)
Q Consensus 105 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~ 177 (203)
++|||++++.+|+.+..|..++..... ..-|+|+++||+|+.+. ++++...++++|...+ +|||++|||.+.|
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~N 165 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATN 165 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccccc
Confidence 999999999999999999999877765 34789999999999763 7899999999998765 8999999999999
Q ss_pred HHHHHHHHHHHHHHhhc
Q 048709 178 VDTAFFRLLQEIYALSK 194 (203)
Q Consensus 178 i~~~~~~i~~~~~~~~~ 194 (203)
|.+.|+.+.+..+..+.
T Consensus 166 V~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 166 VDEAFEEIARRALANED 182 (210)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999998887554
No 21
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=2.8e-34 Score=203.83 Aligned_cols=163 Identities=66% Similarity=1.024 Sum_probs=149.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
..+||+++|.+|||||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+..+...+++.++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 45899999999999999999999999888888888888888888888888899999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709 107 VYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (203)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 186 (203)
|||++++.++..+..|+..+......++|+++|+||.|+...+....++...++...+++++++||++|.|++++|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999998877666799999999999987667788889999988899999999999999999999998
Q ss_pred HHH
Q 048709 187 QEI 189 (203)
Q Consensus 187 ~~~ 189 (203)
+.+
T Consensus 162 ~~i 164 (165)
T cd01868 162 TEI 164 (165)
T ss_pred HHh
Confidence 865
No 22
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=2.6e-34 Score=204.29 Aligned_cols=162 Identities=31% Similarity=0.582 Sum_probs=148.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
+||+++|++|||||||+++|+++++...+.++.+.++....+..++..+.+++|||||++.+..++..+++.+|++|+|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999988888889888888888888889999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhcC-----CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709 109 DITKRQSFDHVARGVEELRAHAD-----SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF 183 (203)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 183 (203)
|++++.+++.+..|+..+.+... .+.|+++|+||+|+.+......++...++...+++++++||++|.|+.++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999998877654 4689999999999976556778888888888899999999999999999999
Q ss_pred HHHHHHH
Q 048709 184 RLLQEIY 190 (203)
Q Consensus 184 ~i~~~~~ 190 (203)
+|++.+.
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9998875
No 23
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=2.6e-34 Score=206.79 Aligned_cols=165 Identities=39% Similarity=0.666 Sum_probs=148.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC----------CEEEEEEEEeCCCchhhhhhhHh
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN----------SKIIKAQIWDTAGQERYRAVTSA 96 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~D~~g~~~~~~~~~~ 96 (203)
+.+||+++|++|||||||++++.++.+...+.++.+.++....+.+. +..+.+.+|||||++.+..++..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 56999999999999999999999999988888888887776666554 45688999999999999999999
Q ss_pred hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCC
Q 048709 97 YYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNG 175 (203)
Q Consensus 97 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 175 (203)
+++++|++++|||+++++++..+..|+..+..... ++.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~ 162 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATG 162 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 99999999999999999999999999988876543 67899999999999876678888999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 048709 176 DNVDTAFFRLLQEIYA 191 (203)
Q Consensus 176 ~~i~~~~~~i~~~~~~ 191 (203)
.|++++|+++++.+.+
T Consensus 163 ~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 163 TNVEKAVERLLDLVMK 178 (180)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999987764
No 24
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=1.3e-34 Score=206.96 Aligned_cols=160 Identities=32% Similarity=0.503 Sum_probs=143.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
+||+++|.+|+|||||+.++..+.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.|..+...+++++|++++||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 7999999999999999999999999888888887655 455678899999999999999999999999999999999999
Q ss_pred eCCCHHHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCccc----------CCCHHHHHHHHHHcCC-eEEEEecCCCC
Q 048709 109 DITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVDMW----------AVSAEDVVEFAEDQGL-FFSEASALNGD 176 (203)
Q Consensus 109 d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~sa~~~~ 176 (203)
|++++++|+.+ ..|+..+.... .+.|+++|+||+|+.+.+ .+..++..+++...++ ++++|||++|.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 68999887654 579999999999996542 4788899999999998 59999999999
Q ss_pred CHHHHHHHHHHHHH
Q 048709 177 NVDTAFFRLLQEIY 190 (203)
Q Consensus 177 ~i~~~~~~i~~~~~ 190 (203)
||+++|+.+++.+.
T Consensus 160 nV~~~F~~~~~~~~ 173 (176)
T cd04133 160 NVKAVFDAAIKVVL 173 (176)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998764
No 25
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=6e-34 Score=202.81 Aligned_cols=166 Identities=49% Similarity=0.811 Sum_probs=151.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
+..+||+++|.+|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+..+...+++.+|+++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 35689999999999999999999999988887788888888888888888889999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709 106 VVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 185 (203)
+|+|++++.++..+..|+..+.....++.|+++|+||.|+.+...+..+++..++...+++++++||+++.|++++|.++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999887766789999999999998766778888999999999999999999999999999999
Q ss_pred HHHHHH
Q 048709 186 LQEIYA 191 (203)
Q Consensus 186 ~~~~~~ 191 (203)
.+.+.+
T Consensus 162 ~~~~~~ 167 (168)
T cd01866 162 AKEIYE 167 (168)
T ss_pred HHHHHh
Confidence 988754
No 26
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=6.1e-34 Score=210.28 Aligned_cols=169 Identities=64% Similarity=0.990 Sum_probs=155.3
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 104 (203)
.+..+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..++++++++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 34679999999999999999999999998877778888888888888999999999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709 105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (203)
Q Consensus 105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 184 (203)
++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++
T Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~ 168 (216)
T PLN03110 89 LLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQT 168 (216)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999888776678999999999999877778888899999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 048709 185 LLQEIYALS 193 (203)
Q Consensus 185 i~~~~~~~~ 193 (203)
+++.+....
T Consensus 169 l~~~i~~~~ 177 (216)
T PLN03110 169 ILLEIYHII 177 (216)
T ss_pred HHHHHHHHh
Confidence 999997743
No 27
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=3.7e-34 Score=202.62 Aligned_cols=161 Identities=39% Similarity=0.686 Sum_probs=153.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD 109 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 109 (203)
||+|+|.+|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|++.+..+...++.++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999998888998899999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 048709 110 ITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189 (203)
Q Consensus 110 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~ 189 (203)
++++++++.+..|+..+........|+++++||.|+.+.++++.+++.+++..++.+++++||+++.|+.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999988876799999999999988789999999999999999999999999999999999999987
Q ss_pred H
Q 048709 190 Y 190 (203)
Q Consensus 190 ~ 190 (203)
.
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 5
No 28
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-35 Score=195.33 Aligned_cols=172 Identities=46% Similarity=0.749 Sum_probs=163.4
Q ss_pred CCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcC
Q 048709 21 IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRG 100 (203)
Q Consensus 21 ~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 100 (203)
+....++.+|++++|+.|+|||+|+.++...++.....+|.++++..+.+.+.++.+++++|||+|+++|+++.+.|+++
T Consensus 2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG 81 (214)
T KOG0086|consen 2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG 81 (214)
T ss_pred cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 44567889999999999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 048709 101 ALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDT 180 (203)
Q Consensus 101 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 180 (203)
+.+.++|||++++++|+.+..|+........+++.+++++||.|+.++++++..+.-.|+++..+.+.++|+++|+|+++
T Consensus 82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEE 161 (214)
T KOG0086|consen 82 AAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE 161 (214)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHH
Confidence 99999999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 048709 181 AFFRLLQEIYAL 192 (203)
Q Consensus 181 ~~~~i~~~~~~~ 192 (203)
.|-...+.|...
T Consensus 162 aFl~c~~tIl~k 173 (214)
T KOG0086|consen 162 AFLKCARTILNK 173 (214)
T ss_pred HHHHHHHHHHHH
Confidence 998888877653
No 29
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.9e-35 Score=196.14 Aligned_cols=168 Identities=44% Similarity=0.725 Sum_probs=159.4
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 104 (203)
.++.++.+++|.+|+|||+|+-++....+..+|..|.+.++..+++.++|..++++||||+|++.|+.+...|+++.+++
T Consensus 5 ~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv 84 (198)
T KOG0079|consen 5 YDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGV 84 (198)
T ss_pred HHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709 105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (203)
Q Consensus 105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 184 (203)
++|||+++.+||.+.++|++.+...+ +.+|-++|+||.|.++.+.+..+++..|+...++.+|++|++++.|++..|.-
T Consensus 85 ~vVYDVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~c 163 (198)
T KOG0079|consen 85 IVVYDVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHC 163 (198)
T ss_pred EEEEECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHH
Confidence 99999999999999999999998877 47888999999999999899999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 048709 185 LLQEIYALS 193 (203)
Q Consensus 185 i~~~~~~~~ 193 (203)
|.+......
T Consensus 164 it~qvl~~k 172 (198)
T KOG0079|consen 164 ITKQVLQAK 172 (198)
T ss_pred HHHHHHHHH
Confidence 988877654
No 30
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=9.2e-34 Score=207.04 Aligned_cols=169 Identities=43% Similarity=0.682 Sum_probs=152.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
+..++|+|+|++|+|||||++++.+..+...+.+|.+.++....+.+++..+.+.+||+||++.+..++..+++++++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 35799999999999999999999999988777788888888788888888889999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709 106 VVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 185 (203)
+|||++++++++.+..|+..+.... ...|+++|+||+|+.....+..++...++...+++++++||++|.|++++|++|
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l 162 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCI 162 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHH
Confidence 9999999999999999999876644 678999999999998766677888889999999999999999999999999999
Q ss_pred HHHHHHhhcc
Q 048709 186 LQEIYALSKK 195 (203)
Q Consensus 186 ~~~~~~~~~~ 195 (203)
++.+....+.
T Consensus 163 ~~~~~~~~~~ 172 (199)
T cd04110 163 TELVLRAKKD 172 (199)
T ss_pred HHHHHHhhhc
Confidence 9999875443
No 31
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.1e-34 Score=205.74 Aligned_cols=160 Identities=26% Similarity=0.440 Sum_probs=142.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
+||+++|.+|+|||||++++.++.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.|..+.+.+++++|++++||
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 7999999999999999999999999888878876655 356778899999999999999999999999999999999999
Q ss_pred eCCCHHHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCc------------ccCCCHHHHHHHHHHcCC-eEEEEecCC
Q 048709 109 DITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD------------MWAVSAEDVVEFAEDQGL-FFSEASALN 174 (203)
Q Consensus 109 d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~sa~~ 174 (203)
|++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+ .+.+..++..+++...++ +|++|||++
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~ 159 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT 159 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence 99999999996 78998887765 5789999999999864 235888999999999997 799999999
Q ss_pred CCC-HHHHHHHHHHHHH
Q 048709 175 GDN-VDTAFFRLLQEIY 190 (203)
Q Consensus 175 ~~~-i~~~~~~i~~~~~ 190 (203)
|.+ |+++|..+++...
T Consensus 160 ~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 160 SEKSVRDIFHVATMACL 176 (178)
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 995 9999999998644
No 32
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=6.8e-34 Score=206.52 Aligned_cols=165 Identities=41% Similarity=0.672 Sum_probs=148.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCcc-CCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCF-DSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 107 (203)
+||+++|.+|||||||++++.+..+.. .+.++.+.++....+.+++..+.+.+|||||++.+......+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999988754 4567777777777778888899999999999999999899999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 048709 108 YDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ 187 (203)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 187 (203)
||++++++++.+..|+..+......++|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|.+|.+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999988877678999999999999766677788888999999999999999999999999999999
Q ss_pred HHHHhh
Q 048709 188 EIYALS 193 (203)
Q Consensus 188 ~~~~~~ 193 (203)
.+....
T Consensus 161 ~~~~~~ 166 (191)
T cd04112 161 ELKHRK 166 (191)
T ss_pred HHHHhc
Confidence 987764
No 33
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=5.5e-34 Score=205.21 Aligned_cols=165 Identities=23% Similarity=0.418 Sum_probs=144.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
+||+++|..|+|||||++++.++.+...+.+|.+.++....+.+++..+.+.+|||+|++.|..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998888899988888888888999999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcc-----cCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709 109 DITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM-----WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF 183 (203)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 183 (203)
|++++++++.+..|+..+........| ++|+||+|+... .....++..+++...++++++|||++|.|++++|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999988776555667 678999998531 11224567788888899999999999999999999
Q ss_pred HHHHHHHHhhc
Q 048709 184 RLLQEIYALSK 194 (203)
Q Consensus 184 ~i~~~~~~~~~ 194 (203)
++.+.+.+...
T Consensus 160 ~l~~~l~~~~~ 170 (182)
T cd04128 160 IVLAKAFDLPL 170 (182)
T ss_pred HHHHHHHhcCC
Confidence 99998877443
No 34
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=8.4e-34 Score=201.48 Aligned_cols=162 Identities=43% Similarity=0.739 Sum_probs=146.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
..+||+++|++|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+|||||++.+..+...+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999988887777888888888888888888899999999999999989999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHHH
Q 048709 107 VYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL-FFSEASALNGDNVDTAFFRL 185 (203)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~i 185 (203)
|||+++++++..+..|+..+......++|+++|+||+|+.+.+.+..+++.++++..+. .++++||++|.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999998876667899999999999987767778888889888875 68999999999999999999
Q ss_pred HHH
Q 048709 186 LQE 188 (203)
Q Consensus 186 ~~~ 188 (203)
.+.
T Consensus 162 ~~~ 164 (165)
T cd01864 162 ATE 164 (165)
T ss_pred HHh
Confidence 875
No 35
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.2e-33 Score=204.73 Aligned_cols=164 Identities=45% Similarity=0.706 Sum_probs=150.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
+||+|+|.+|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999988777788888887788888888899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 048709 109 DITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188 (203)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~ 188 (203)
|+++++++..+..|+..+........|+++++||+|+.+...+..++...++...+++++++||++|.|++++|+++++.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999887766678999999999998766778888888988889999999999999999999999999
Q ss_pred HHHh
Q 048709 189 IYAL 192 (203)
Q Consensus 189 ~~~~ 192 (203)
+...
T Consensus 161 ~~~~ 164 (188)
T cd04125 161 IIKR 164 (188)
T ss_pred HHHH
Confidence 8763
No 36
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=5e-34 Score=202.02 Aligned_cols=160 Identities=33% Similarity=0.499 Sum_probs=141.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
+||+++|.+|||||||++++..+.+...+.++.+ +.....+.+++..+.+.+|||||++.+..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999888777766665 445566778888899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 048709 109 DITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ 187 (203)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 187 (203)
|++++++++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++..++.+++++||++|.|+.++|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999888876544 67999999999999766567777788888888899999999999999999999987
Q ss_pred HH
Q 048709 188 EI 189 (203)
Q Consensus 188 ~~ 189 (203)
.+
T Consensus 161 ~~ 162 (163)
T cd04136 161 QI 162 (163)
T ss_pred hc
Confidence 54
No 37
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=1.1e-33 Score=200.04 Aligned_cols=160 Identities=49% Similarity=0.821 Sum_probs=147.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+......+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888788888888888888888899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 048709 109 DITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188 (203)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~ 188 (203)
|+++++++..+..|+..+.....+++|+++++||+|+...+.+..+++..++...+++++++||+++.|+.++|+++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998877766889999999999998766788889999999999999999999999999999999875
No 38
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=1.1e-33 Score=208.88 Aligned_cols=164 Identities=34% Similarity=0.533 Sum_probs=148.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECC-EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINS-KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 107 (203)
+||+++|.+|||||||+++|.+..+...+.+|.+.++....+.+++ ..+.+.+|||+|++.+..++..+++++|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888889998888888887754 578999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709 108 YDITKRQSFDHVARGVEELRAHAD---SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (203)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 184 (203)
||++++++++.+..|+..+.+... .+.|+++|+||+|+.+.+.+..++..+++...+++++++||++|.|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999998877643 35789999999999877778888999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 048709 185 LLQEIYAL 192 (203)
Q Consensus 185 i~~~~~~~ 192 (203)
+++.+...
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99998764
No 39
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=1.1e-33 Score=205.37 Aligned_cols=163 Identities=26% Similarity=0.444 Sum_probs=142.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 107 (203)
.+||+++|..|+|||||+.++..+.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.|..+++.|++++|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 48999999999999999999999999888878876544 34566788999999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCccc------------CCCHHHHHHHHHHcC-CeEEEEecC
Q 048709 108 YDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDMW------------AVSAEDVVEFAEDQG-LFFSEASAL 173 (203)
Q Consensus 108 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~sa~ 173 (203)
||++++.+|+.+. .|+..+.... .++|+++|+||.|+.+.. .+..++..+++...+ +++++|||+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 9999999999996 5877666543 579999999999996532 356778889999888 589999999
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q 048709 174 NGDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 174 ~~~~i~~~~~~i~~~~~~~ 192 (203)
+|.||+++|+++++.+...
T Consensus 161 ~g~~v~e~f~~l~~~~~~~ 179 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLNP 179 (191)
T ss_pred CCCCHHHHHHHHHHHHhcc
Confidence 9999999999999988764
No 40
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=1.1e-33 Score=205.05 Aligned_cols=165 Identities=36% Similarity=0.528 Sum_probs=146.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
..+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|++++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 358999999999999999999999988777777766544 4566788888999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709 107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (203)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 185 (203)
|||++++++++.+..|+..+.+... .+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|+.++|.++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l 162 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL 162 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 9999999999999999988876644 688999999999997766677788888888889999999999999999999999
Q ss_pred HHHHHHh
Q 048709 186 LQEIYAL 192 (203)
Q Consensus 186 ~~~~~~~ 192 (203)
++.+...
T Consensus 163 ~~~l~~~ 169 (189)
T PTZ00369 163 VREIRKY 169 (189)
T ss_pred HHHHHHH
Confidence 9988765
No 41
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=9.7e-34 Score=200.92 Aligned_cols=162 Identities=31% Similarity=0.495 Sum_probs=142.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 107 (203)
++||+++|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 37999999999999999999998887776767765443 45677788889999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709 108 YDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (203)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 186 (203)
||++++.+++.+..|+..+..... .+.|+++|+||+|+.+...+..++..++++..+++++++||++|.|++++|.+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 999999999999999888876543 7899999999999987666777778888888899999999999999999999999
Q ss_pred HHHH
Q 048709 187 QEIY 190 (203)
Q Consensus 187 ~~~~ 190 (203)
+.+.
T Consensus 160 ~~l~ 163 (164)
T cd04175 160 RQIN 163 (164)
T ss_pred HHhh
Confidence 8664
No 42
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=1.3e-33 Score=204.97 Aligned_cols=169 Identities=32% Similarity=0.479 Sum_probs=146.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD 109 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 109 (203)
||+++|.+|+|||||+++|..+.+...+.++.+..+ .....+++..+.+.+|||||++.|..++..+++.+|++++|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 589999999999999999999888777777766444 3455678888899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709 110 ITKRQSFDHVARGVEELRAHAD---SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (203)
Q Consensus 110 ~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 186 (203)
++++++++.+..|+..+..... .+.|+++|+||+|+...+.+..++..+++...+++++++||++|.|++++|++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999888766542 5789999999999977667778888888888899999999999999999999999
Q ss_pred HHHHHhhcccccc
Q 048709 187 QEIYALSKKELEC 199 (203)
Q Consensus 187 ~~~~~~~~~~~~~ 199 (203)
+.+........++
T Consensus 160 ~~l~~~~~~~~~~ 172 (190)
T cd04144 160 RALRQQRQGGQGP 172 (190)
T ss_pred HHHHHhhcccCCC
Confidence 9887765544333
No 43
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.7e-33 Score=207.20 Aligned_cols=167 Identities=47% Similarity=0.751 Sum_probs=150.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEE-CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTI-NSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
.+||+|+|.+|+|||||+++|.++.+...+.++.+.++....+.+ ++..+.+.+|||+|++.+..+...+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 489999999999999999999999988888788888887777776 4677899999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709 107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (203)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 185 (203)
|||++++++++.+..|+..+..... ...|+++|+||+|+.+.+.+..++..++++..+++++++||++|.|++++|++|
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l 161 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL 161 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999998876654 467889999999998777788889999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q 048709 186 LQEIYALSK 194 (203)
Q Consensus 186 ~~~~~~~~~ 194 (203)
.+.+.+..+
T Consensus 162 ~~~~~~~~~ 170 (211)
T cd04111 162 TQEIYERIK 170 (211)
T ss_pred HHHHHHHhh
Confidence 998877544
No 44
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=2.2e-33 Score=207.64 Aligned_cols=165 Identities=30% Similarity=0.482 Sum_probs=147.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
...+||+++|.+|||||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.|..++..+++++|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 56799999999999999999999999988888899888888878878888899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709 106 VVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 185 (203)
+|||++++++++.+..|+..+.... .+.|+++|+||+|+.+. .+..+++ .++...++++++|||++|.|++++|.+|
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~-~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l 167 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhhc-cCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence 9999999999999999999887654 67999999999998643 4445555 7788888999999999999999999999
Q ss_pred HHHHHHhh
Q 048709 186 LQEIYALS 193 (203)
Q Consensus 186 ~~~~~~~~ 193 (203)
++.+.+..
T Consensus 168 ~~~~~~~~ 175 (219)
T PLN03071 168 ARKLAGDP 175 (219)
T ss_pred HHHHHcCc
Confidence 99987643
No 45
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=3.9e-33 Score=197.57 Aligned_cols=163 Identities=54% Similarity=0.858 Sum_probs=149.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
+||+++|++|||||||++++.+..+.....++.+.++....+..++..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999888777788888888888888888889999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 048709 109 DITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188 (203)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~ 188 (203)
|++++.+++.+..|+..+......++|+++++||+|+........+.+.+++...+++++++|+++|.|++++++++.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999998887766789999999999997766778888999999999999999999999999999999988
Q ss_pred HHH
Q 048709 189 IYA 191 (203)
Q Consensus 189 ~~~ 191 (203)
+.+
T Consensus 161 ~~~ 163 (164)
T smart00175 161 ILK 163 (164)
T ss_pred Hhh
Confidence 754
No 46
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=3.9e-33 Score=198.89 Aligned_cols=163 Identities=37% Similarity=0.636 Sum_probs=144.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD 109 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 109 (203)
||+++|.+|||||||++++.++.+...+.++.+.++....+.+++..+.+++|||||++.|..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999988888998888888888888989999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccC--CCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709 110 ITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWA--VSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (203)
Q Consensus 110 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 186 (203)
+++++++..+..|+..+.+... ...|+++|+||+|+..... ...++...++...+.+++++||++|.|++++|+.++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999988765443 4578999999999865432 345667788888889999999999999999999999
Q ss_pred HHHHHh
Q 048709 187 QEIYAL 192 (203)
Q Consensus 187 ~~~~~~ 192 (203)
+.+.+.
T Consensus 162 ~~~~~~ 167 (170)
T cd04108 162 ALTFEL 167 (170)
T ss_pred HHHHHc
Confidence 988654
No 47
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=7.2e-33 Score=203.81 Aligned_cols=167 Identities=50% Similarity=0.823 Sum_probs=152.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
.+.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 35699999999999999999999999888877788888888888888888899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709 106 VVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 185 (203)
+|||++++.++..+..|+..+........|+++++||+|+...+.+..++..+++...+++++++||+++.|++++|+++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l 163 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999888776666789999999999998777788889999999999999999999999999999999
Q ss_pred HHHHHHh
Q 048709 186 LQEIYAL 192 (203)
Q Consensus 186 ~~~~~~~ 192 (203)
++.+...
T Consensus 164 ~~~~~~~ 170 (210)
T PLN03108 164 AAKIYKK 170 (210)
T ss_pred HHHHHHH
Confidence 9988764
No 48
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=4.2e-33 Score=197.14 Aligned_cols=159 Identities=35% Similarity=0.584 Sum_probs=142.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC--CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN--SKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
+||+++|.+|+|||||+++++++.+...+.++.+.++....+.+. +..+.+++|||||++.+..++..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999998887777888877766666666 778899999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709 107 VYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (203)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 186 (203)
|||+++++++..+..|+..+.... .++|+++|+||+|+..+..+..+++..++...+++++++||++|.|++++|++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999988876544 6799999999999987667788889999999999999999999999999999987
Q ss_pred HH
Q 048709 187 QE 188 (203)
Q Consensus 187 ~~ 188 (203)
+.
T Consensus 160 ~~ 161 (162)
T cd04106 160 EK 161 (162)
T ss_pred Hh
Confidence 64
No 49
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=7.8e-33 Score=195.98 Aligned_cols=162 Identities=48% Similarity=0.791 Sum_probs=148.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 107 (203)
.+||+++|++|||||||++++.++++.....++.+..+....+.+++..+.+.+||+||++.+...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 37999999999999999999999998876778888778788888899999999999999999998889999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 048709 108 YDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ 187 (203)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 187 (203)
+|+++++++..+..|+..+........|+++++||+|+........++...++...+++++++||++|.|+.++|+++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999988776678999999999999866667888888999999999999999999999999999998
Q ss_pred HH
Q 048709 188 EI 189 (203)
Q Consensus 188 ~~ 189 (203)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 75
No 50
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=2.7e-33 Score=200.57 Aligned_cols=160 Identities=28% Similarity=0.405 Sum_probs=138.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 107 (203)
.+||+++|.+|+|||||++++..+.+...+.||.+..+. ..+.+++..+.+.+|||+|++.+..++..+++++|++++|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 379999999999999999999999988778788765553 4566788889999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHHcC-CeEEEEecC
Q 048709 108 YDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDM------------WAVSAEDVVEFAEDQG-LFFSEASAL 173 (203)
Q Consensus 108 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~sa~ 173 (203)
||++++++++.+. .|+..+.... ++.|+++|+||+|+.+. +.+..+++.++++..+ +.+++|||+
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 9999999999996 5887776544 57999999999998643 4577788888988887 689999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 048709 174 NGDNVDTAFFRLLQEI 189 (203)
Q Consensus 174 ~~~~i~~~~~~i~~~~ 189 (203)
+|.|++++|+.++...
T Consensus 159 tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 159 TQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998753
No 51
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=4.4e-34 Score=192.68 Aligned_cols=170 Identities=44% Similarity=0.729 Sum_probs=157.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEE-CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTI-NSKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 104 (203)
.+.++++|+|.+-+|||+|++.++.+++..-.+||.++++..+-+.+ +|..+++++|||+|+++|+++...|++++-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 35799999999999999999999999999999999999998877766 68899999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhcC-CC-CcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 048709 105 VVVYDITKRQSFDHVARGVEELRAHAD-SS-IRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF 182 (203)
Q Consensus 105 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~-~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 182 (203)
++|||+++.+||+.+..|+.+...... +. +-+.+|++|+|+..+++++.+|..+++..+++.++++|+++|.||++.|
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF 165 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAF 165 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHH
Confidence 999999999999999999998877765 44 5578899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcc
Q 048709 183 FRLLQEIYALSKK 195 (203)
Q Consensus 183 ~~i~~~~~~~~~~ 195 (203)
.-+.+.+....++
T Consensus 166 ~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 166 DMLAQEIFQAIQQ 178 (213)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999876554
No 52
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=3.7e-33 Score=197.71 Aligned_cols=161 Identities=29% Similarity=0.478 Sum_probs=141.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 107 (203)
++||+++|.+|+|||||++++..+.+...+.++.+ .+....+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 37999999999999999999999988877766654 45556777888888999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709 108 YDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (203)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 186 (203)
||++++.++..+..|+..+.+... .++|+++|+||+|+.....+..++...++...+++++++||++|.|+.++|.++.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999888877644 6899999999999976556666777888888889999999999999999999998
Q ss_pred HHH
Q 048709 187 QEI 189 (203)
Q Consensus 187 ~~~ 189 (203)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 754
No 53
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=9.2e-33 Score=197.01 Aligned_cols=162 Identities=33% Similarity=0.602 Sum_probs=144.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
+..+||+++|.+|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 46799999999999999999999999988877788887777778888999999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcC-CeEEEEecCCCCCHHH
Q 048709 106 VVYDITKRQSFDHVARGVEELRAHAD----SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQG-LFFSEASALNGDNVDT 180 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~ 180 (203)
+|||++++++++.+..|+..+..... .+.|+++|+||+|+. .+.+..+++.+++...+ .+++++||++|.|+.+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 161 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAA 161 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHH
Confidence 99999999999999999887765432 568999999999986 34677888999998887 4899999999999999
Q ss_pred HHHHHHHH
Q 048709 181 AFFRLLQE 188 (203)
Q Consensus 181 ~~~~i~~~ 188 (203)
+|+++++.
T Consensus 162 ~~~~~~~~ 169 (170)
T cd04116 162 AFEEAVRR 169 (170)
T ss_pred HHHHHHhh
Confidence 99999875
No 54
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=7.3e-33 Score=195.72 Aligned_cols=160 Identities=39% Similarity=0.673 Sum_probs=146.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
+||+++|++|||||||++++++.++...+.++.+.++....+.+++..+++.+|||||+..+..+...+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999988888888888888888888888889999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 048709 109 DITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188 (203)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~ 188 (203)
|++++++++.+..|+..+......+.|+++++||+|+.+......++...++...+++++++||+++.|++++++++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999998877655679999999999997666677888888888889999999999999999999999875
No 55
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=6.2e-33 Score=197.20 Aligned_cols=160 Identities=31% Similarity=0.545 Sum_probs=141.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
+||+++|++|||||||+++++.+.+...+.++.+.+.....+..++..+.+.+|||+|++.+..+...++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988887777788877777777777888899999999999999988899999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 048709 109 DITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188 (203)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~ 188 (203)
|+++++++..+..|+..+.+... ++|+++|+||+|+.+. ... .+..+++....++++++||++|.|++++|++|++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKDR-KVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhcccc-cCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 99999999999999999887664 8999999999999742 333 34556777788899999999999999999999998
Q ss_pred HHH
Q 048709 189 IYA 191 (203)
Q Consensus 189 ~~~ 191 (203)
+.+
T Consensus 158 ~~~ 160 (166)
T cd00877 158 LLG 160 (166)
T ss_pred HHh
Confidence 865
No 56
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=6e-33 Score=196.78 Aligned_cols=161 Identities=37% Similarity=0.561 Sum_probs=140.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
+||+|+|++|||||||++++.+..+...+.++.+ +.......+++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 4899999999999999999999888777766654 334456667888899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 048709 109 DITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ 187 (203)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 187 (203)
|++++++++.+..|+..+.+... .+.|+++|+||+|+...+....+++..++...+++++++||++|.|++++|+++++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 99999999999998888766544 57899999999999876667777888888888999999999999999999999998
Q ss_pred HHH
Q 048709 188 EIY 190 (203)
Q Consensus 188 ~~~ 190 (203)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 764
No 57
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=1.1e-32 Score=196.68 Aligned_cols=162 Identities=40% Similarity=0.664 Sum_probs=145.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh-hhhHhhhcCCcEEEE
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR-AVTSAYYRGALGAVV 106 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~d~~i~ 106 (203)
.+||+++|++|+|||||+++++.+.+...+.++.+.++....+.+++..+.+.+||++|++.+. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 4899999999999999999999998887777888888888888889989999999999998886 578889999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCC---CCCHHHHH
Q 048709 107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALN---GDNVDTAF 182 (203)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~---~~~i~~~~ 182 (203)
|||++++.++..+..|+..+..... .++|+++|+||+|+.+.+++..++..+++....+++++|||++ +.+++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 9999999999999999988877654 6799999999999988777888889999999999999999999 89999999
Q ss_pred HHHHHHH
Q 048709 183 FRLLQEI 189 (203)
Q Consensus 183 ~~i~~~~ 189 (203)
..+++.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9998765
No 58
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=1.3e-32 Score=194.58 Aligned_cols=160 Identities=31% Similarity=0.517 Sum_probs=139.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
+||+++|.+|||||||++++.+..+.+.+.++.+.+.......+++..+.+.+|||+|++.|..++..+++++|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999988777677766766667778888999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 048709 109 DITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188 (203)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~ 188 (203)
|++++.++..+..|+..+.... .+.|+++|+||+|+... ..++...++...+++++++||++|.|++++|+.+++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999998886543 57899999999998542 2345566777788999999999999999999999988
Q ss_pred HHHh
Q 048709 189 IYAL 192 (203)
Q Consensus 189 ~~~~ 192 (203)
+.++
T Consensus 157 ~~~~ 160 (161)
T cd04124 157 AVSY 160 (161)
T ss_pred HHhc
Confidence 8764
No 59
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=8.9e-33 Score=203.53 Aligned_cols=159 Identities=33% Similarity=0.508 Sum_probs=138.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
+||+++|.+|+|||||++++..+++.. +.++.+.++....+ ..+.+.+|||+|++.|..+...+++++|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999998864 45666665544332 4578999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc-------------------ccCCCHHHHHHHHHHcC-----
Q 048709 109 DITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD-------------------MWAVSAEDVVEFAEDQG----- 164 (203)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~----- 164 (203)
|++++++|+.+..|+..+.+....++|+++|+||+|+.+ .+++..+++..++...+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999888887766557799999999999975 46788999999998876
Q ss_pred ---------CeEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709 165 ---------LFFSEASALNGDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 165 ---------~~~~~~sa~~~~~i~~~~~~i~~~~~~~ 192 (203)
++|++|||++|.||+++|..+++.+.+.
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~ 192 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPL 192 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999988864
No 60
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=1e-32 Score=195.94 Aligned_cols=159 Identities=29% Similarity=0.393 Sum_probs=137.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
+||+++|.+|||||||+++++++.+...+.++.+..+ ...+..++..+.+.+|||||++.+..+...+++.+|++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999988777766665433 445566778889999999999999998889999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709 109 DITKRQSFDHVARGVEELRAHAD---SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (203)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 185 (203)
|++++++++.+..|+..+..... .++|+++|+||+|+...+.+..++...++..+++++++|||++|.|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 99999999999988877765432 579999999999997766777788888888889999999999999999999999
Q ss_pred HHH
Q 048709 186 LQE 188 (203)
Q Consensus 186 ~~~ 188 (203)
++.
T Consensus 161 ~~~ 163 (165)
T cd04140 161 LNL 163 (165)
T ss_pred Hhc
Confidence 753
No 61
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=1.4e-32 Score=194.18 Aligned_cols=160 Identities=33% Similarity=0.533 Sum_probs=139.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 107 (203)
.+||+++|.+|||||||+++|.++.+...+.++.+.. ....+.+++..+.+.+|||+|++.+..++..+++++|++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchhe-EEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 3799999999999999999999998877776776544 345567788888899999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709 108 YDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (203)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 186 (203)
||+++..+++.+..|+..+.+... .+.|+++|+||+|+.+ +....+++.+++...+++++++||++|.|++++|++++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999999889888877654 6799999999999976 35667788888888899999999999999999999998
Q ss_pred HHH
Q 048709 187 QEI 189 (203)
Q Consensus 187 ~~~ 189 (203)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04138 159 REI 161 (162)
T ss_pred HHh
Confidence 754
No 62
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=1.4e-32 Score=194.77 Aligned_cols=161 Identities=34% Similarity=0.490 Sum_probs=140.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 107 (203)
.+||+++|.+|+|||||++++.+..+...+.++.+.. ......+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 4899999999999999999999988766666665533 345566788888999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709 108 YDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (203)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 186 (203)
+|++++.+++.+..|+..+.+... .+.|+++++||+|+...+.+..++..+++...+++++++||++|.|++++|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 999999999999999988876543 6789999999999987666677788888888889999999999999999999998
Q ss_pred HHH
Q 048709 187 QEI 189 (203)
Q Consensus 187 ~~~ 189 (203)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 754
No 63
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-33 Score=187.35 Aligned_cols=169 Identities=40% Similarity=0.672 Sum_probs=159.9
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 104 (203)
....+||+++|..|+|||+|+++++.+-+++....|.++++-.+++.+++..+++++|||+|+++|++....|++.++++
T Consensus 4 ykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahal 83 (213)
T KOG0095|consen 4 YKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (213)
T ss_pred cceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709 105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (203)
Q Consensus 105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 184 (203)
|+|||++=..+|+-+.+|+.++..+...++.-|+|+||+|+.+.++++.+-..+|+......++++||++..|++.+|..
T Consensus 84 ilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~ 163 (213)
T KOG0095|consen 84 ILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLD 163 (213)
T ss_pred EEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHH
Confidence 99999999999999999999999999888889999999999998899999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 048709 185 LLQEIYALS 193 (203)
Q Consensus 185 i~~~~~~~~ 193 (203)
+...+....
T Consensus 164 ~a~rli~~a 172 (213)
T KOG0095|consen 164 LACRLISEA 172 (213)
T ss_pred HHHHHHHHH
Confidence 887776543
No 64
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=2.2e-32 Score=201.56 Aligned_cols=164 Identities=23% Similarity=0.384 Sum_probs=141.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
+||+|+|.+|+|||||++++..+.+...+.||.+..+. ..+.+++..+.+.||||+|++.|..+.+.++.++|++++||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 79999999999999999999999998888888876554 56778899999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHHcCC-eEEEEecCC
Q 048709 109 DITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDM------------WAVSAEDVVEFAEDQGL-FFSEASALN 174 (203)
Q Consensus 109 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~ 174 (203)
|++++++|+.+. .|...+.. ..++.|+++|+||+|+.+. ..+..++...++...++ +|++|||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQE-FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 999999999995 56655544 3478999999999998642 13677889999999995 899999999
Q ss_pred CCC-HHHHHHHHHHHHHHhhc
Q 048709 175 GDN-VDTAFFRLLQEIYALSK 194 (203)
Q Consensus 175 ~~~-i~~~~~~i~~~~~~~~~ 194 (203)
+.+ |+++|..++........
T Consensus 160 ~~~~V~~~F~~~~~~~~~~~~ 180 (222)
T cd04173 160 SERSVRDVFHVATVASLGRGH 180 (222)
T ss_pred CCcCHHHHHHHHHHHHHhccC
Confidence 885 99999999998766433
No 65
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=2.6e-32 Score=195.35 Aligned_cols=158 Identities=30% Similarity=0.450 Sum_probs=137.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
+||+++|.+|||||||+.++..+.+...+.++.+ ......+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 7999999999999999999999998877777764 334455677888899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHHcCC-eEEEEecCC
Q 048709 109 DITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDM------------WAVSAEDVVEFAEDQGL-FFSEASALN 174 (203)
Q Consensus 109 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~ 174 (203)
|++++++|..+. .|+..+.... ++.|+++|+||+|+.+. +.+..++..+++...+. ++++|||++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999995 5877766543 57999999999998642 24778889999998884 899999999
Q ss_pred CCCHHHHHHHHHHH
Q 048709 175 GDNVDTAFFRLLQE 188 (203)
Q Consensus 175 ~~~i~~~~~~i~~~ 188 (203)
|.|++++|+.+++.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999998864
No 66
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=7.9e-32 Score=190.38 Aligned_cols=161 Identities=39% Similarity=0.653 Sum_probs=143.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
+||+++|.+|+|||||++++++..+...+.++.+.......+.+.+..+.+.+||+||++.+..+++.+++++|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999999887766667666666667777788889999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 048709 109 DITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188 (203)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~ 188 (203)
|++++++++.+..|+..+......++|+++++||+|+........+++.+++...+++++++|++++.|++++++++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999988877766689999999999998766677788888888889999999999999999999999876
Q ss_pred H
Q 048709 189 I 189 (203)
Q Consensus 189 ~ 189 (203)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 5
No 67
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=9.5e-32 Score=190.62 Aligned_cols=160 Identities=31% Similarity=0.518 Sum_probs=139.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC--CCccCCCCCcceeeEEEEEEEC-CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKN--EFCFDSKSTIGVEFQTRTVTIN-SKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
+||+++|.+|||||||++++... .+...+.++.+.++....+.++ +..+.+.+|||||++.+..+...++.++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 5667777888878777766664 57789999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709 106 VVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 185 (203)
+|+|+++++++..+..|+..+.... .+.|+++|+||+|+.+..++...+...+....+++++++||++|.|++++|+.+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9999999999999999998877654 568999999999997766677767777777888999999999999999999999
Q ss_pred HHHH
Q 048709 186 LQEI 189 (203)
Q Consensus 186 ~~~~ 189 (203)
++.+
T Consensus 160 ~~~~ 163 (164)
T cd04101 160 ARAF 163 (164)
T ss_pred HHHh
Confidence 8764
No 68
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=4.3e-32 Score=196.75 Aligned_cols=163 Identities=26% Similarity=0.420 Sum_probs=139.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
.||+++|.+|||||||++++.++.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..++..++.++|++++||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 38999999999999999999999988777777765543 45567888899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCccc------------CCCHHHHHHHHHHcC-CeEEEEecCC
Q 048709 109 DITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDMW------------AVSAEDVVEFAEDQG-LFFSEASALN 174 (203)
Q Consensus 109 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~sa~~ 174 (203)
|++++++|+.+. .|+..+.... .+.|+++|+||+|+.+.+ .+..++..+++...+ +++++|||++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999986 5888777544 579999999999997543 245667778887776 7899999999
Q ss_pred CCCHHHHHHHHHHHHHHhh
Q 048709 175 GDNVDTAFFRLLQEIYALS 193 (203)
Q Consensus 175 ~~~i~~~~~~i~~~~~~~~ 193 (203)
|.|++++|.++++.+....
T Consensus 159 ~~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 159 NRGVNEAFTEAARVALNVR 177 (189)
T ss_pred CCCHHHHHHHHHHHHhccc
Confidence 9999999999999887644
No 69
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=1.2e-31 Score=194.99 Aligned_cols=165 Identities=35% Similarity=0.619 Sum_probs=144.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCcc-CCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCF-DSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 107 (203)
+||+|+|.+|+|||||+++|.++.+.. .+.++.+..+....+.+++..+.+.+||++|++.+..+...+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988864 5667877777777888899999999999999999999899999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcc----cCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709 108 YDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM----WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF 183 (203)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 183 (203)
||++++.+++.+..|+..+.... .+.|+++|+||+|+... +.+..+++.+++...+++++++||++|.|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999988988876643 57899999999998542 34556778888888899999999999999999999
Q ss_pred HHHHHHHHhhc
Q 048709 184 RLLQEIYALSK 194 (203)
Q Consensus 184 ~i~~~~~~~~~ 194 (203)
++.+.+.....
T Consensus 160 ~i~~~~~~~~~ 170 (193)
T cd04118 160 KVAEDFVSRAN 170 (193)
T ss_pred HHHHHHHHhcc
Confidence 99998876433
No 70
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=4.6e-32 Score=197.53 Aligned_cols=164 Identities=21% Similarity=0.244 Sum_probs=137.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh--------hhhHhhhcC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR--------AVTSAYYRG 100 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------~~~~~~~~~ 100 (203)
+||+|+|.+|||||||++++.++++...+.++.+.+.+...+.+++..+.+.+|||||...+. .....+++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999999888787887766666667788888999999999964432 112345789
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCCcccCCCHHHHHHHHH-HcCCeEEEEecCCCC
Q 048709 101 ALGAVVVYDITKRQSFDHVARGVEELRAHA---DSSIRIILIGNKSDLVDMWAVSAEDVVEFAE-DQGLFFSEASALNGD 176 (203)
Q Consensus 101 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~ 176 (203)
+|++++|||++++++++.+..|+..+.... ..++|+++|+||+|+...+.+..+++.+++. .+++++++|||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999988877654 3679999999999997766667777777654 568999999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q 048709 177 NVDTAFFRLLQEIYAL 192 (203)
Q Consensus 177 ~i~~~~~~i~~~~~~~ 192 (203)
|++++|+.+++.+...
T Consensus 161 ~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 161 HILLLFKELLISATTR 176 (198)
T ss_pred CHHHHHHHHHHHhhcc
Confidence 9999999999887754
No 71
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=9.9e-32 Score=189.97 Aligned_cols=159 Identities=43% Similarity=0.745 Sum_probs=143.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
+||+++|++|||||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+......+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999887777788888887777778888899999999999999988899999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 048709 109 DITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ 187 (203)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 187 (203)
|++++++++.+..|+..+..... .+.|+++++||+|+... ....++..+++...+++++++||++|.|++++++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENR-EVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccccc-ccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 99999999999999988877754 78999999999999743 56678888999999999999999999999999999887
Q ss_pred H
Q 048709 188 E 188 (203)
Q Consensus 188 ~ 188 (203)
.
T Consensus 160 ~ 160 (161)
T cd01863 160 K 160 (161)
T ss_pred h
Confidence 5
No 72
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=8e-32 Score=195.06 Aligned_cols=165 Identities=28% Similarity=0.405 Sum_probs=140.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC-CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN-SKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 107 (203)
+||+|+|.+|+|||||+++|.++.+...+.++.+..+.. .+... +..+.+.+|||||++.+..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 589999999999999999999999877776776555433 34454 7788999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCcc----cCCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHH
Q 048709 108 YDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDM----WAVSAEDVVEFAEDQGL-FFSEASALNGDNVDTA 181 (203)
Q Consensus 108 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~ 181 (203)
||++++++++.+. .|+..+... ..+.|+++|+||.|+... +.+..++..+++...++ +++++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999986 477666543 367899999999998653 24667888999999988 8999999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 048709 182 FFRLLQEIYALSKK 195 (203)
Q Consensus 182 ~~~i~~~~~~~~~~ 195 (203)
|..+++.+....++
T Consensus 159 f~~l~~~~~~~~~~ 172 (187)
T cd04132 159 FDTAIEEALKKEGK 172 (187)
T ss_pred HHHHHHHHHhhhhh
Confidence 99999999886654
No 73
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=1.8e-31 Score=190.54 Aligned_cols=165 Identities=35% Similarity=0.631 Sum_probs=145.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
+||+++|++|||||||++++.+..+.....++.+.++....+.+++..+.+.+||+||++.+..++..+++++|++++||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999888777778777777777888888899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcC-CeEEEEecCCCCCHHHHHH
Q 048709 109 DITKRQSFDHVARGVEELRAHAD----SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQG-LFFSEASALNGDNVDTAFF 183 (203)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~ 183 (203)
|++++++++.+..|...+..... .++|+++|+||+|+........++...++...+ .+++++|+++|.|++++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999988888776655443 379999999999998555667788888888887 7999999999999999999
Q ss_pred HHHHHHHHhh
Q 048709 184 RLLQEIYALS 193 (203)
Q Consensus 184 ~i~~~~~~~~ 193 (203)
++++.+.+..
T Consensus 161 ~i~~~~~~~~ 170 (172)
T cd01862 161 TIARKALEQE 170 (172)
T ss_pred HHHHHHHhcc
Confidence 9999887653
No 74
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=2.6e-31 Score=195.84 Aligned_cols=167 Identities=39% Similarity=0.644 Sum_probs=144.2
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 104 (203)
....+||+|+|.+|+|||||+++|.+..+. .+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 89 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI 89 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 345699999999999999999999998774 4557777777777788888889999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHH-HHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 048709 105 VVVYDITKRQSFDHVAR-GVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF 182 (203)
Q Consensus 105 i~v~d~~~~~s~~~~~~-~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 182 (203)
++|||++++++++.+.. |...+..... .+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|
T Consensus 90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~ 169 (211)
T PLN03118 90 ILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCF 169 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999976 4444443332 568999999999998766777788888888899999999999999999999
Q ss_pred HHHHHHHHHh
Q 048709 183 FRLLQEIYAL 192 (203)
Q Consensus 183 ~~i~~~~~~~ 192 (203)
++|.+.+.+.
T Consensus 170 ~~l~~~~~~~ 179 (211)
T PLN03118 170 EELALKIMEV 179 (211)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 75
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=1e-31 Score=195.51 Aligned_cols=156 Identities=29% Similarity=0.501 Sum_probs=139.7
Q ss_pred EcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCH
Q 048709 34 IGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKR 113 (203)
Q Consensus 34 vG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 113 (203)
+|.+|||||||+++++.+.+...+.+|.+.++....+.+++..+.+.+|||+|++.|..++..|++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999888777888888888888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709 114 QSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 114 ~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~ 192 (203)
.++..+..|+..+.+.. .++|+++|+||+|+... .+..+. ..++...++.+++|||++|.||.++|.++++.+.+.
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~-~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKDR-KVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccc-cCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999888765 58999999999998652 444444 467888899999999999999999999999998764
No 76
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=100.00 E-value=1.8e-31 Score=187.49 Aligned_cols=158 Identities=51% Similarity=0.856 Sum_probs=145.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
+||+++|++|||||||++++.+..+...+.++.+.+.....+..++..+.+.+||+||+..+......+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998887788888888888888888899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709 109 DITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (203)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 186 (203)
|+++++++..+..|+..+........|+++++||+|+........+++.+++...+++++++||+++.|+.+++++|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 999999999999999988887767899999999999975557788899999999999999999999999999999886
No 77
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=1.8e-31 Score=190.04 Aligned_cols=161 Identities=33% Similarity=0.519 Sum_probs=141.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
+||+++|.+|||||||++++.++.+...+.++.+.. ....+.+++..+.+.+|||||++.|..+++.+++.++++++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 789999999999999999999988877776766543 4566678888899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcC-CeEEEEecCCCCCHHHHHHHHH
Q 048709 109 DITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQG-LFFSEASALNGDNVDTAFFRLL 186 (203)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~i~ 186 (203)
|++++++++.+..|...+.+... .+.|+++++||.|+...+....++...+++.++ ++++++||++|.|++++|.+++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~ 160 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV 160 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999888776433 689999999999998766777788888888887 8999999999999999999999
Q ss_pred HHHH
Q 048709 187 QEIY 190 (203)
Q Consensus 187 ~~~~ 190 (203)
+.+.
T Consensus 161 ~~~~ 164 (168)
T cd04177 161 RQII 164 (168)
T ss_pred HHHh
Confidence 8664
No 78
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=2.1e-31 Score=199.73 Aligned_cols=161 Identities=26% Similarity=0.401 Sum_probs=140.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
+||+++|.+|+|||||+++++++.+...+.+|.+ ++....+.+++..+.+.||||+|++.|..+...++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999988877767764 556667788898999999999999999888888899999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhh---------cCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHH-cCCeEEEEecCCCCCH
Q 048709 109 DITKRQSFDHVARGVEELRAH---------ADSSIRIILIGNKSDLVDMWAVSAEDVVEFAED-QGLFFSEASALNGDNV 178 (203)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~---------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i 178 (203)
|++++++|+.+..|+..+... ...++|+++|+||+|+...+++..+++.+++.. .++.++++||++|.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999998887653 225799999999999976567788888887764 4678999999999999
Q ss_pred HHHHHHHHHHHH
Q 048709 179 DTAFFRLLQEIY 190 (203)
Q Consensus 179 ~~~~~~i~~~~~ 190 (203)
+++|++|.+.+.
T Consensus 160 ~elf~~L~~~~~ 171 (247)
T cd04143 160 DEMFRALFSLAK 171 (247)
T ss_pred HHHHHHHHHHhc
Confidence 999999998663
No 79
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-31 Score=177.49 Aligned_cols=172 Identities=48% Similarity=0.803 Sum_probs=163.1
Q ss_pred CCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcC
Q 048709 21 IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRG 100 (203)
Q Consensus 21 ~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 100 (203)
.|....+-+|-+++|.-|+|||+|+.++...++....+++.++++-++.+.+.+..+++++|||+|+++|+.+.+.|+++
T Consensus 4 ~pynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrg 83 (215)
T KOG0097|consen 4 APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRG 83 (215)
T ss_pred CccchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 35566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 048709 101 ALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDT 180 (203)
Q Consensus 101 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 180 (203)
+.+.++|+|++.+.++..+..|+........++..+++++||.|+..++.++.++.++|+.+.+..++++||++|.++++
T Consensus 84 aagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nved 163 (215)
T KOG0097|consen 84 AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVED 163 (215)
T ss_pred ccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHH
Confidence 99999999999999999999999998888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 048709 181 AFFRLLQEIYAL 192 (203)
Q Consensus 181 ~~~~i~~~~~~~ 192 (203)
.|-...++++.-
T Consensus 164 afle~akkiyqn 175 (215)
T KOG0097|consen 164 AFLETAKKIYQN 175 (215)
T ss_pred HHHHHHHHHHHh
Confidence 998888888763
No 80
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=6.9e-33 Score=186.04 Aligned_cols=170 Identities=35% Similarity=0.615 Sum_probs=160.3
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 104 (203)
....+||+++|..=+|||||+-+++..++.....+|....+..+.+.+.+....+.||||+|+++|+.+=+.|+++++++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 35689999999999999999999999999888878888888888899989999999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709 105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (203)
Q Consensus 105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 184 (203)
++|||+++++||+.++.|...+....+..+.+++|+||+|+.++++++.+++.+++...+..++++||+++.||.++|+.
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~ 169 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFES 169 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHH
Confidence 99999999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q 048709 185 LLQEIYALSK 194 (203)
Q Consensus 185 i~~~~~~~~~ 194 (203)
+..++.+...
T Consensus 170 Lt~~MiE~~s 179 (218)
T KOG0088|consen 170 LTAKMIEHSS 179 (218)
T ss_pred HHHHHHHHhh
Confidence 9998887553
No 81
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=1.3e-31 Score=190.96 Aligned_cols=163 Identities=22% Similarity=0.226 Sum_probs=140.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 104 (203)
.+.+||+++|.+|+|||||+++++++.+. ..+.+|.+..+....+.+++..+.+.+||++|++.+..+...+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 35799999999999999999999999987 77888888887777788888888999999999999988889999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHH
Q 048709 105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL-FFSEASALNGDNVDTAFF 183 (203)
Q Consensus 105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~ 183 (203)
++|+|++++.+++.+..|+..+... .++|+++|+||+|+.+..+....+..+++...++ +++++||++|.|++++|+
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~ 159 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT 159 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence 9999999999999988888765332 4789999999999976444444456677777776 479999999999999999
Q ss_pred HHHHHHH
Q 048709 184 RLLQEIY 190 (203)
Q Consensus 184 ~i~~~~~ 190 (203)
.+.+.+.
T Consensus 160 ~l~~~~~ 166 (169)
T cd01892 160 KLATAAQ 166 (169)
T ss_pred HHHHHhh
Confidence 9998875
No 82
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-33 Score=188.89 Aligned_cols=169 Identities=38% Similarity=0.643 Sum_probs=154.9
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC---------CEEEEEEEEeCCCchhhhhhh
Q 048709 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN---------SKIIKAQIWDTAGQERYRAVT 94 (203)
Q Consensus 24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~D~~g~~~~~~~~ 94 (203)
..++.+|.+.+|.+|+|||||+.+++.+.+.....+|.++++..+.+.++ +..+.+++|||+|+++|+++.
T Consensus 5 dydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT 84 (219)
T KOG0081|consen 5 DYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT 84 (219)
T ss_pred cHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH
Confidence 35677899999999999999999999999999999999999999888762 356889999999999999999
Q ss_pred HhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecC
Q 048709 95 SAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASAL 173 (203)
Q Consensus 95 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 173 (203)
.++++++-+++++||+++.+||.+++.|+..+....- .+.-+++++||+|+.+++.++.+++.+++.++++|||++||-
T Consensus 85 TAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~ 164 (219)
T KOG0081|consen 85 TAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSAC 164 (219)
T ss_pred HHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccc
Confidence 9999999999999999999999999999998876544 666799999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q 048709 174 NGDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 174 ~~~~i~~~~~~i~~~~~~~ 192 (203)
+|.||++..+-++..+++-
T Consensus 165 tg~Nv~kave~LldlvM~R 183 (219)
T KOG0081|consen 165 TGTNVEKAVELLLDLVMKR 183 (219)
T ss_pred cCcCHHHHHHHHHHHHHHH
Confidence 9999999999998888763
No 83
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=9e-31 Score=186.49 Aligned_cols=163 Identities=40% Similarity=0.692 Sum_probs=144.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
..++|+++|++|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+||+||+..+......++..+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 45999999999999999999999888877777777777777788888888899999999999999888999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709 107 VYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (203)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 186 (203)
|+|++++.+++.+..|+..+......+.|+++++||+|+...+.+..+....+......+++++||++|.|++++|+++.
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 165 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLA 165 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999998888776666899999999999987666777777778777788999999999999999999998
Q ss_pred HHH
Q 048709 187 QEI 189 (203)
Q Consensus 187 ~~~ 189 (203)
+.+
T Consensus 166 ~~~ 168 (169)
T cd04114 166 CRL 168 (169)
T ss_pred HHh
Confidence 764
No 84
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=100.00 E-value=2.6e-31 Score=188.65 Aligned_cols=160 Identities=35% Similarity=0.511 Sum_probs=135.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh-hhhhhHhhhcCCcEEEEEE
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER-YRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~d~~i~v~ 108 (203)
||+++|++|+|||||+++++.+.+...+.++....+ ...+.+++..+.+.+||+||+.. +......+++.+|++++|+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999998887666656654333 45567788889999999999875 3445677899999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCC-CHHHHHHHH
Q 048709 109 DITKRQSFDHVARGVEELRAHA--DSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGD-NVDTAFFRL 185 (203)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~-~i~~~~~~i 185 (203)
|++++++++.+..|+..+.... ..+.|+++|+||+|+...+.+..++...++...+++++++||++|. |++++|+.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999988877654 3579999999999997766778888899999999999999999995 999999999
Q ss_pred HHHHH
Q 048709 186 LQEIY 190 (203)
Q Consensus 186 ~~~~~ 190 (203)
.+.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 98764
No 85
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=2.9e-31 Score=192.71 Aligned_cols=158 Identities=22% Similarity=0.307 Sum_probs=128.9
Q ss_pred eeEEEEEcCCCCcHHHHHH-HHhcCC-----CccCCCCCcce-eeEEEE--------EEECCEEEEEEEEeCCCchhhhh
Q 048709 28 VFKVVVIGDSAVGKSQILS-RFTKNE-----FCFDSKSTIGV-EFQTRT--------VTINSKIIKAQIWDTAGQERYRA 92 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~l~D~~g~~~~~~ 92 (203)
.+||+++|.+|+|||||+. ++.++. +...+.||.+. +.+... ..+++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999995 555443 34455666642 222222 25688899999999999875 3
Q ss_pred hhHhhhcCCcEEEEEEeCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCc-------------------ccCCC
Q 048709 93 VTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD-------------------MWAVS 152 (203)
Q Consensus 93 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~ 152 (203)
+...+++++|++++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.. .+.+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4567899999999999999999999996 5888876654 5789999999999863 35788
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 048709 153 AEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188 (203)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~ 188 (203)
.+++.++++..+++|++|||++|.||+++|+.+++.
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 999999999999999999999999999999998864
No 86
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=100.00 E-value=5.7e-31 Score=194.96 Aligned_cols=161 Identities=29% Similarity=0.337 Sum_probs=138.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhc-CCcEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYR-GALGAVV 106 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~-~~d~~i~ 106 (203)
+||+++|.+|+|||||++++..+.+. ..+.++.+.++....+.+++..+.+.+|||+|++. .....++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999988876 55656655567777888888889999999999872 33455666 9999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709 107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (203)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 185 (203)
|||++++.+++.+..|+..+..... .++|+++|+||+|+...+.+..++..+++...+++++++||++|.|++++|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999888876543 679999999999998776777888888888889999999999999999999999
Q ss_pred HHHHHH
Q 048709 186 LQEIYA 191 (203)
Q Consensus 186 ~~~~~~ 191 (203)
++.+..
T Consensus 159 ~~~~~~ 164 (221)
T cd04148 159 VRQIRL 164 (221)
T ss_pred HHHHHh
Confidence 998864
No 87
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=3.8e-31 Score=186.34 Aligned_cols=153 Identities=20% Similarity=0.326 Sum_probs=129.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
+||+++|.+|+|||||+.++..+.+...+.++ +..+ ...+.+++..+.+.+|||+|++. ..+++++|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 58999999999999999999988877665443 3333 46678888888999999999864 34678899999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCC--cccCCCHHHHHHHHHHc-CCeEEEEecCCCCCHHHHHHH
Q 048709 109 DITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLV--DMWAVSAEDVVEFAEDQ-GLFFSEASALNGDNVDTAFFR 184 (203)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~~ 184 (203)
|++++++|+.+..|+..+..... .++|+++|+||.|+. ..+.+..++..++++.. .++|++|||++|.||+++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999877654 678999999999984 34578888888888776 589999999999999999999
Q ss_pred HHHH
Q 048709 185 LLQE 188 (203)
Q Consensus 185 i~~~ 188 (203)
+.+.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 8864
No 88
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=3.6e-31 Score=189.41 Aligned_cols=158 Identities=29% Similarity=0.429 Sum_probs=136.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeC
Q 048709 31 VVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDI 110 (203)
Q Consensus 31 i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 110 (203)
|+|+|.+|||||||++++.++.+...+.++.... ....+.+++..+.+.+|||||++.+..+...+++++|++++|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 6899999999999999999999877776665444 345567788889999999999999999999999999999999999
Q ss_pred CCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHHcCC-eEEEEecCCCC
Q 048709 111 TKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDM------------WAVSAEDVVEFAEDQGL-FFSEASALNGD 176 (203)
Q Consensus 111 ~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~~~ 176 (203)
+++++++.+. .|+..+.... ++.|+++|+||+|+... ..+..++..+++...+. ++++|||++|.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999985 5888776644 68999999999998652 23777888889999986 89999999999
Q ss_pred CHHHHHHHHHHHHH
Q 048709 177 NVDTAFFRLLQEIY 190 (203)
Q Consensus 177 ~i~~~~~~i~~~~~ 190 (203)
|++++|+.+++.+.
T Consensus 159 ~v~~lf~~l~~~~~ 172 (174)
T smart00174 159 GVREVFEEAIRAAL 172 (174)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998764
No 89
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=100.00 E-value=1e-30 Score=187.11 Aligned_cols=159 Identities=28% Similarity=0.414 Sum_probs=135.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
+||+++|++|+|||||++++..+.+...+.++.. ......+.+++..+.+.+|||||++.+...+..+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999988766656554 333445677888889999999999999999999999999999999
Q ss_pred eCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHHcCC-eEEEEecCC
Q 048709 109 DITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDM------------WAVSAEDVVEFAEDQGL-FFSEASALN 174 (203)
Q Consensus 109 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~ 174 (203)
|++++.+++.+. .|+..+... ..+.|+++++||+|+.+. ..+..+++..+++..+. ++++|||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999985 576666554 578999999999998543 25667888889888886 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 048709 175 GDNVDTAFFRLLQEI 189 (203)
Q Consensus 175 ~~~i~~~~~~i~~~~ 189 (203)
|.|++++|+.+++.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999999875
No 90
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.98 E-value=3.4e-30 Score=182.40 Aligned_cols=161 Identities=35% Similarity=0.537 Sum_probs=140.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
+||+++|.+|||||||+++++...+...+.++... ........++..+.+.+||+||+..+......+++.++++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchh-hEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 58999999999999999999998887666666543 34455677888899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 048709 109 DITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ 187 (203)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 187 (203)
|++++.++..+..|+..+..... .++|+++|+||+|+........++...++..++++++++||++|.|++++|+++.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 99999999999999888877643 68999999999999764456677788888888899999999999999999999988
Q ss_pred HHH
Q 048709 188 EIY 190 (203)
Q Consensus 188 ~~~ 190 (203)
.+.
T Consensus 160 ~~~ 162 (164)
T cd04139 160 EIR 162 (164)
T ss_pred HHH
Confidence 764
No 91
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.98 E-value=1.6e-30 Score=185.96 Aligned_cols=157 Identities=27% Similarity=0.440 Sum_probs=135.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
+||+++|.+|+|||||++++.++.+...+.++. .+.....+.+++..+.+.+|||||++.+..++..+++++|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999988877776664 4455556778888899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCc------------ccCCCHHHHHHHHHHcCC-eEEEEecCC
Q 048709 109 DITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD------------MWAVSAEDVVEFAEDQGL-FFSEASALN 174 (203)
Q Consensus 109 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~sa~~ 174 (203)
|++++.+++.+. .|+..+... ..+.|+++++||.|+.. .+.+..+++..++...+. .+++|||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999984 687777653 25789999999999863 346778889999998887 899999999
Q ss_pred CCCHHHHHHHHHH
Q 048709 175 GDNVDTAFFRLLQ 187 (203)
Q Consensus 175 ~~~i~~~~~~i~~ 187 (203)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999988763
No 92
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.98 E-value=3.3e-30 Score=181.70 Aligned_cols=158 Identities=37% Similarity=0.528 Sum_probs=140.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD 109 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 109 (203)
||+++|++|||||||++++++..+...+.++.. +........++..+.+.+||+||...+......+++.+|++++|+|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998887666666655 5556666777778899999999999999989999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 048709 110 ITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188 (203)
Q Consensus 110 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~ 188 (203)
+++++++..+..|+..+..... ..+|+++++||+|+........+++..++...+.+++++|++++.|+++++++|++.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999999888887765 689999999999998766777888999999888999999999999999999999875
No 93
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.98 E-value=2.7e-30 Score=186.38 Aligned_cols=164 Identities=25% Similarity=0.414 Sum_probs=132.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEE-CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTI-NSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
.+||+++|.+|||||||++++....+... .++.+.......+.. ++..+.+.+|||||++.+..++..+++++|++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 58999999999999999999998877544 466665555555543 4466889999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHH------cCCeEEEEecCCCCCHH
Q 048709 107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAED------QGLFFSEASALNGDNVD 179 (203)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~sa~~~~~i~ 179 (203)
|+|++++.+++.+..|+..+..... .+.|+++++||+|+.+ ....+++..++.. ..++++++||++|.|++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 159 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ 159 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence 9999999999888888877765433 5799999999999865 3455555554431 13568999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 048709 180 TAFFRLLQEIYALSK 194 (203)
Q Consensus 180 ~~~~~i~~~~~~~~~ 194 (203)
+++++|.+.+.+.++
T Consensus 160 ~l~~~l~~~l~~~~~ 174 (183)
T cd04152 160 EGLEKLYEMILKRRK 174 (183)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998876544
No 94
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=1.3e-30 Score=185.54 Aligned_cols=154 Identities=24% Similarity=0.423 Sum_probs=124.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
..++|+++|.+|||||||+++|..+.+.. +.+|.+.+.. .+.. ..+.+.+|||||++.+..++..+++++|++++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 35899999999999999999998877643 4466665443 2323 45789999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHH-----cCCeEEEEecCCCCCHHH
Q 048709 107 VYDITKRQSFDHVARGVEELRAHA-DSSIRIILIGNKSDLVDMWAVSAEDVVEFAED-----QGLFFSEASALNGDNVDT 180 (203)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~ 180 (203)
|+|++++.++..+..++..+.... ..++|+++|+||+|+.+ .+..+++.+++.. ..++++++||++|.|+++
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence 999999999999888877765543 26789999999999875 4566777776532 235789999999999999
Q ss_pred HHHHHHH
Q 048709 181 AFFRLLQ 187 (203)
Q Consensus 181 ~~~~i~~ 187 (203)
+|++|.+
T Consensus 161 ~~~~l~~ 167 (168)
T cd04149 161 GLTWLSS 167 (168)
T ss_pred HHHHHhc
Confidence 9999864
No 95
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=1.4e-29 Score=182.14 Aligned_cols=165 Identities=34% Similarity=0.490 Sum_probs=142.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
.||+++|.+|+|||||++++.+..+...+.++....+ ...+..++..+.+.+||+||+..+...+..++..++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999887766666654433 455667778888999999999999988999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 048709 109 DITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ 187 (203)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 187 (203)
|+++..+++.+..|+..+.+... .+.|+++++||+|+...+....++...++...+.+++++||+++.|+.++|.++.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999998888777544 67899999999999765566777778888888899999999999999999999999
Q ss_pred HHHHhhc
Q 048709 188 EIYALSK 194 (203)
Q Consensus 188 ~~~~~~~ 194 (203)
.+.....
T Consensus 161 ~~~~~~~ 167 (180)
T cd04137 161 EIEKVEN 167 (180)
T ss_pred HHHHhcC
Confidence 8887654
No 96
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=4.3e-30 Score=184.90 Aligned_cols=159 Identities=21% Similarity=0.391 Sum_probs=125.8
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
...+||+++|.+|||||||++++..+.+. .+.+|.+.+.. .+.. ..+.+++||+||++.+..++..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 34589999999999999999999887765 34566665433 3333 4578999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHc-----CCeEEEEecCCCCCHH
Q 048709 106 VVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQ-----GLFFSEASALNGDNVD 179 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~sa~~~~~i~ 179 (203)
+|+|+++++++..+..++..+..... .++|+++++||+|+.+ ....+++.+.+... .+.+++|||++|.|+.
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCC--CCCHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 99999999999988877776654322 5799999999999976 34555555443222 1346789999999999
Q ss_pred HHHHHHHHHHHH
Q 048709 180 TAFFRLLQEIYA 191 (203)
Q Consensus 180 ~~~~~i~~~~~~ 191 (203)
++|++|.+.+..
T Consensus 168 e~~~~l~~~~~~ 179 (181)
T PLN00223 168 EGLDWLSNNIAN 179 (181)
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
No 97
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=4.9e-30 Score=181.05 Aligned_cols=152 Identities=24% Similarity=0.452 Sum_probs=119.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
+||+++|.+|||||||++++..+.+. .+.++.+.... .+.. ..+.+.+||+||++.+..++..+++++|++++|+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999877775 35566665443 3333 3578999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHH
Q 048709 109 DITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAE-----DQGLFFSEASALNGDNVDTAF 182 (203)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~ 182 (203)
|++++.++..+..++..+..... .+.|+++++||+|+.+ ....+++..... ...+.++++||++|.|++++|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN--AMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCC--CCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 99999999999887777654322 5689999999999965 233444433321 223468899999999999999
Q ss_pred HHHHH
Q 048709 183 FRLLQ 187 (203)
Q Consensus 183 ~~i~~ 187 (203)
++|.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99864
No 98
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=3.2e-30 Score=183.79 Aligned_cols=156 Identities=25% Similarity=0.421 Sum_probs=127.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD 109 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 109 (203)
||+++|.+|||||||++++.+..+.. +.+|.+.... .+.. ..+.+.+|||||+..+...+..+++++|++++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999886643 4566554443 3333 45788999999999999899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcC------CeEEEEecCCCCCHHHHH
Q 048709 110 ITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQG------LFFSEASALNGDNVDTAF 182 (203)
Q Consensus 110 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~sa~~~~~i~~~~ 182 (203)
+++++++..+..|+..+.+... .+.|+++++||+|+.+ .+..+++.+++...+ +.+++|||++|.|++++|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 9999999999998888765433 5689999999999965 467777777764322 368899999999999999
Q ss_pred HHHHHHHHHh
Q 048709 183 FRLLQEIYAL 192 (203)
Q Consensus 183 ~~i~~~~~~~ 192 (203)
++|.+.+..-
T Consensus 154 ~~l~~~~~~~ 163 (169)
T cd04158 154 DWLSRQLVAA 163 (169)
T ss_pred HHHHHHHhhc
Confidence 9999877653
No 99
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=8.2e-30 Score=182.61 Aligned_cols=156 Identities=26% Similarity=0.426 Sum_probs=123.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
..+||+++|.+|||||||++++..+.+. .+.+|.+.... .+.. ..+.+.+||+||++.+..++..|++++|++++
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 3599999999999999999999877764 34566655443 3333 34789999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHH-----cCCeEEEEecCCCCCHHH
Q 048709 107 VYDITKRQSFDHVARGVEELRAHA-DSSIRIILIGNKSDLVDMWAVSAEDVVEFAED-----QGLFFSEASALNGDNVDT 180 (203)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~ 180 (203)
|+|++++++++....++..+.... ..+.|+++|+||+|+.+ ....+++.+.... ..+.++++||++|.|+++
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e 164 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPD--AMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYE 164 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCccc--CCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHH
Confidence 999999999999988887775433 25789999999999976 3344454443321 234577899999999999
Q ss_pred HHHHHHHHH
Q 048709 181 AFFRLLQEI 189 (203)
Q Consensus 181 ~~~~i~~~~ 189 (203)
+|++|.+.+
T Consensus 165 ~~~~l~~~~ 173 (175)
T smart00177 165 GLTWLSNNL 173 (175)
T ss_pred HHHHHHHHh
Confidence 999998764
No 100
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.6e-29 Score=182.07 Aligned_cols=159 Identities=23% Similarity=0.374 Sum_probs=124.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
..+||+++|++|||||||++++..+.+.. +.+|.+.... .+.. ..+.+.+|||||++.+..++..+++++|++|+
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 35899999999999999999998777754 4466654433 3333 44789999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHH-----cCCeEEEEecCCCCCHHH
Q 048709 107 VYDITKRQSFDHVARGVEELRAHA-DSSIRIILIGNKSDLVDMWAVSAEDVVEFAED-----QGLFFSEASALNGDNVDT 180 (203)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~ 180 (203)
|+|+++++++.....++..+.... ..+.|+++|+||.|+.+ ....+++...+.. ..++++++||++|.|+++
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e 168 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN--AMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE 168 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC--CCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence 999999999999887777664432 25689999999999865 3344444333221 224577999999999999
Q ss_pred HHHHHHHHHHHh
Q 048709 181 AFFRLLQEIYAL 192 (203)
Q Consensus 181 ~~~~i~~~~~~~ 192 (203)
+|++|.+.+.+.
T Consensus 169 ~~~~l~~~i~~~ 180 (182)
T PTZ00133 169 GLDWLSANIKKS 180 (182)
T ss_pred HHHHHHHHHHHh
Confidence 999999887764
No 101
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=8.5e-32 Score=175.99 Aligned_cols=162 Identities=40% Similarity=0.666 Sum_probs=150.2
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeC
Q 048709 32 VVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDI 110 (203)
Q Consensus 32 ~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 110 (203)
+++|.+++|||+|+-++..+.+. ....+|.++++..+.+..++..+++++|||+|+++|++....|++++|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 36899999999999888877765 44568999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 048709 111 TKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190 (203)
Q Consensus 111 ~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~~ 190 (203)
.+..||++.+.|+.++..+....+.+++++||+|+...+.+..++...++..+++|+.++||++|.|++..|-.|.+.+.
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence 99999999999999999998888899999999999888899999999999999999999999999999999999988876
Q ss_pred Hhh
Q 048709 191 ALS 193 (203)
Q Consensus 191 ~~~ 193 (203)
...
T Consensus 161 k~~ 163 (192)
T KOG0083|consen 161 KLK 163 (192)
T ss_pred Hhc
Confidence 643
No 102
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=3e-29 Score=183.11 Aligned_cols=160 Identities=26% Similarity=0.412 Sum_probs=134.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD 109 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 109 (203)
||+++|.+|+|||||++++++..+...+.++.. ......+.+.+..+.+.+||+||+..+..++..++..+|++++|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999988776656653 4555667778888899999999999998888899999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCc-ccCCCHHHHHHHHH-HcCCeEEEEecCCCCCHHHHHHHHH
Q 048709 110 ITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVD-MWAVSAEDVVEFAE-DQGLFFSEASALNGDNVDTAFFRLL 186 (203)
Q Consensus 110 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~i~~~~~~i~ 186 (203)
++++.+++.+..|+..+..... .++|+++|+||+|+.. ...+..++..+... ..+.+++++||++|.|++++|++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999888877655 5799999999999865 34455555554443 4567899999999999999999999
Q ss_pred HHHH
Q 048709 187 QEIY 190 (203)
Q Consensus 187 ~~~~ 190 (203)
+.+.
T Consensus 160 ~~~~ 163 (198)
T cd04147 160 RQAN 163 (198)
T ss_pred HHhh
Confidence 8765
No 103
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=4e-29 Score=179.00 Aligned_cols=159 Identities=26% Similarity=0.412 Sum_probs=132.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
.||+++|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..+...++.++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 5899999999999999999999988777767765444 345677888889999999999999888888899999999999
Q ss_pred eCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHHcCC-eEEEEecCC
Q 048709 109 DITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDM------------WAVSAEDVVEFAEDQGL-FFSEASALN 174 (203)
Q Consensus 109 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~ 174 (203)
|++++++++.+. .|+..+... ..+.|+++|+||+|+... ..+...+..+++...+. ++++|||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999998885 576666543 357899999999998642 23445677788877764 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 048709 175 GDNVDTAFFRLLQEI 189 (203)
Q Consensus 175 ~~~i~~~~~~i~~~~ 189 (203)
|.|++++|+++.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998754
No 104
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=6.4e-29 Score=179.83 Aligned_cols=166 Identities=30% Similarity=0.466 Sum_probs=138.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
.||+|+|++|+|||||++++..+.+...+.++....+ ...+.+++..+.+.+||++|++.+......++..+|++++||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 5899999999999999999998877666555544333 345667788889999999999888877777889999999999
Q ss_pred eCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCc----------ccCCCHHHHHHHHHHcCC-eEEEEecCCCC
Q 048709 109 DITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD----------MWAVSAEDVVEFAEDQGL-FFSEASALNGD 176 (203)
Q Consensus 109 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~ 176 (203)
|+++.++++.+. .|+..+.... ++.|+++|+||+|+.. .+.+..++...+++..+. ++++|||++|.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999986 5888776654 5699999999999853 234566788888888885 89999999999
Q ss_pred CHHHHHHHHHHHHHHhhccc
Q 048709 177 NVDTAFFRLLQEIYALSKKE 196 (203)
Q Consensus 177 ~i~~~~~~i~~~~~~~~~~~ 196 (203)
|++++|+++.+.+...+++.
T Consensus 160 ~v~~~f~~l~~~~~~~~~~~ 179 (187)
T cd04129 160 GVDDVFEAATRAALLVRKSE 179 (187)
T ss_pred CHHHHHHHHHHHHhcccCcc
Confidence 99999999999888776654
No 105
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=2.8e-29 Score=181.43 Aligned_cols=165 Identities=35% Similarity=0.496 Sum_probs=153.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
..+||+++|.+|+|||+|..++....+...+.||.. +.+.+.+.+++..+.+.++||+|++.+..+...++.+.|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 358999999999999999999999999999988876 7788888899999999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709 107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (203)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 185 (203)
||+++++.||+.+..++..+.+... ..+|+++|+||+|+...+.+..++..+++..++++++++||+.+.+++++|..+
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 9999999999999999999855544 668999999999999888999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 048709 186 LQEIYAL 192 (203)
Q Consensus 186 ~~~~~~~ 192 (203)
+..+...
T Consensus 161 ~r~~~~~ 167 (196)
T KOG0395|consen 161 VREIRLP 167 (196)
T ss_pred HHHHHhh
Confidence 9988763
No 106
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.97 E-value=2.8e-29 Score=179.54 Aligned_cols=155 Identities=24% Similarity=0.406 Sum_probs=124.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
...++|+++|++|||||||+++|.+..+. ...++.+ +....+.++ .+.+.+||+||++.+..++..+++++|+++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDID-TISPTLG--FQIKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccc--cceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 34589999999999999999999987553 3335544 333444454 467899999999999888999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Q 048709 106 VVYDITKRQSFDHVARGVEELRAHA-DSSIRIILIGNKSDLVDMWAVSAEDVVEFAE-----DQGLFFSEASALNGDNVD 179 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 179 (203)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ...+++.+++. ...++++++||++|.|++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 164 (173)
T cd04154 87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA--LSEEEIREALELDKISSHHWRIQPCSAVTGEGLL 164 (173)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC--CCHHHHHHHhCccccCCCceEEEeccCCCCcCHH
Confidence 9999999999998888877765432 267999999999999763 35566666553 345789999999999999
Q ss_pred HHHHHHHH
Q 048709 180 TAFFRLLQ 187 (203)
Q Consensus 180 ~~~~~i~~ 187 (203)
++|+++++
T Consensus 165 ~l~~~l~~ 172 (173)
T cd04154 165 QGIDWLVD 172 (173)
T ss_pred HHHHHHhc
Confidence 99999864
No 107
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=2.9e-30 Score=183.08 Aligned_cols=153 Identities=18% Similarity=0.305 Sum_probs=124.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD 109 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 109 (203)
.|+++|.+|||||||++++.+..+...+.+|.+... ..+++..+++.+||+||+..+..++..+++++|++++|+|
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 389999999999999999999877766667766542 2344456789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCH----HHHHHHHHHcCCeEEEEecCC------CCCHH
Q 048709 110 ITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSA----EDVVEFAEDQGLFFSEASALN------GDNVD 179 (203)
Q Consensus 110 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~sa~~------~~~i~ 179 (203)
++++.++...+.|+..+.... .++|+++|+||+|+...+.+.. .++..++...++++++|||++ ++||+
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~ 155 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence 999999999988888776543 6899999999999976432221 123445566778899999888 99999
Q ss_pred HHHHHHHH
Q 048709 180 TAFFRLLQ 187 (203)
Q Consensus 180 ~~~~~i~~ 187 (203)
++|+.++.
T Consensus 156 ~~~~~~~~ 163 (164)
T cd04162 156 DLLSQLIN 163 (164)
T ss_pred HHHHHHhc
Confidence 99998874
No 108
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=6.4e-29 Score=177.14 Aligned_cols=157 Identities=31% Similarity=0.496 Sum_probs=131.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
+||+++|.+|||||||+++|++..+...+.++.. +........++..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 6899999999999999999999988666655543 344455667888899999999999988888888889999999999
Q ss_pred eCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCccc-----------CCCHHHHHHHHHHcCC-eEEEEecCCC
Q 048709 109 DITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDMW-----------AVSAEDVVEFAEDQGL-FFSEASALNG 175 (203)
Q Consensus 109 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~sa~~~ 175 (203)
|++++.++.... .|+..+.... .+.|+++|+||+|+.... .+..++..+++...+. +++++||++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 999999988874 4666655543 489999999999987643 2356778888888887 9999999999
Q ss_pred CCHHHHHHHHHH
Q 048709 176 DNVDTAFFRLLQ 187 (203)
Q Consensus 176 ~~i~~~~~~i~~ 187 (203)
.|+.+++++|++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
No 109
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=1.7e-28 Score=181.42 Aligned_cols=165 Identities=28% Similarity=0.472 Sum_probs=143.3
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 104 (203)
....+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..++..++++
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~ 85 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCA 85 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEE
Confidence 44569999999999999999999888888888888988888877777788889999999999999998889999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709 105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (203)
Q Consensus 105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 184 (203)
++|||+++..++..+..|+..+.... .+.|+++++||+|+.+. .... +...++...++.++++||++|.|+++.|.+
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ 162 (215)
T PTZ00132 86 IIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVKA-RQITFHRKKNLQYYDISAKSNYNFEKPFLW 162 (215)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCCH-HHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999988887654 57899999999998653 3333 345677788899999999999999999999
Q ss_pred HHHHHHHh
Q 048709 185 LLQEIYAL 192 (203)
Q Consensus 185 i~~~~~~~ 192 (203)
|.+.+...
T Consensus 163 ia~~l~~~ 170 (215)
T PTZ00132 163 LARRLTND 170 (215)
T ss_pred HHHHHhhc
Confidence 99988753
No 110
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=2e-28 Score=174.00 Aligned_cols=160 Identities=25% Similarity=0.321 Sum_probs=123.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
+||+++|.+|+|||||++++.++.+...++.+ ... ......+++..+++.+|||||...+...+..++..+|++++|+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPE-ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccc-eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 48999999999999999999998886554332 222 2333455667789999999999888777777889999999999
Q ss_pred eCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCcccCC--CHHHHHHHHHHc-C-CeEEEEecCCCCCHHHHHH
Q 048709 109 DITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDMWAV--SAEDVVEFAEDQ-G-LFFSEASALNGDNVDTAFF 183 (203)
Q Consensus 109 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~-~-~~~~~~sa~~~~~i~~~~~ 183 (203)
|++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.... ..+++..++... . .++++|||++|.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999985 5777666544 58999999999999764332 123333333333 2 3799999999999999999
Q ss_pred HHHHHHHH
Q 048709 184 RLLQEIYA 191 (203)
Q Consensus 184 ~i~~~~~~ 191 (203)
.+.+.+.+
T Consensus 158 ~~~~~~~~ 165 (166)
T cd01893 158 YAQKAVLH 165 (166)
T ss_pred HHHHHhcC
Confidence 99887754
No 111
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.97 E-value=2.8e-28 Score=177.41 Aligned_cols=147 Identities=26% Similarity=0.368 Sum_probs=125.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC-----CEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN-----SKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 103 (203)
+||+++|.+|+|||||++++.++.+...+.+|.+.++..+.+.++ +..+.+.+|||+|++.|..+...+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999888888888877777766663 567899999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhc-------------------CCCCcEEEEEeCCCCCcccCCCHH----HHHHHH
Q 048709 104 AVVVYDITKRQSFDHVARGVEELRAHA-------------------DSSIRIILIGNKSDLVDMWAVSAE----DVVEFA 160 (203)
Q Consensus 104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~p~ivv~nK~D~~~~~~~~~~----~~~~~~ 160 (203)
+|+|||++++++++.+..|+..+.... ..++|+++|+||.|+.+.+.+..+ ....++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999987642 257999999999999765444443 244567
Q ss_pred HHcCCeEEEEecCCC
Q 048709 161 EDQGLFFSEASALNG 175 (203)
Q Consensus 161 ~~~~~~~~~~sa~~~ 175 (203)
.+.+++.++.+++++
T Consensus 161 ~~~~~~~i~~~c~~~ 175 (202)
T cd04102 161 EQGNAEEINLNCTNG 175 (202)
T ss_pred HhcCCceEEEecCCc
Confidence 889999999988865
No 112
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=2.7e-28 Score=174.63 Aligned_cols=153 Identities=25% Similarity=0.445 Sum_probs=121.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 107 (203)
.++|+++|.+|+|||||++++..+.+.. ..++.+.+.. .+..+ .+.+.+||+||++.+...+..+++++|++++|
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999887754 3466554432 33333 47899999999999998899999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHH-----HHcCCeEEEEecCCCCCHHHH
Q 048709 108 YDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFA-----EDQGLFFSEASALNGDNVDTA 181 (203)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~~ 181 (203)
+|+++++++.....++..+..... .+.|+++++||+|+.+ ....+++.+.. ....+++++|||++|.|++++
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~ 167 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG--AMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEG 167 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC--CCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHH
Confidence 999999998888777776654433 5789999999999876 33455544332 234467999999999999999
Q ss_pred HHHHHH
Q 048709 182 FFRLLQ 187 (203)
Q Consensus 182 ~~~i~~ 187 (203)
|++|.+
T Consensus 168 ~~~l~~ 173 (174)
T cd04153 168 LDWIAS 173 (174)
T ss_pred HHHHhc
Confidence 999864
No 113
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=2.8e-28 Score=172.38 Aligned_cols=152 Identities=23% Similarity=0.392 Sum_probs=117.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC-ccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEF-CFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
+|+++|.+|||||||+++|.+... ...+.++.+.... .+. ...+.+.+|||||+..+..++..+++++|++++|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 3445566554332 222 24577899999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHHH
Q 048709 109 DITKRQSFDHVARGVEELRAHA---DSSIRIILIGNKSDLVDMWAVSAEDVVEFAE-----DQGLFFSEASALNGDNVDT 180 (203)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~ 180 (203)
|++++.++..+..|+..+.+.. ..++|+++|+||+|+.+. ...+++..... ...++++++||++|.|+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~--~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA--LTAVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC--CCHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 9999999988888877765532 257999999999999753 23334333322 1234689999999999999
Q ss_pred HHHHHHH
Q 048709 181 AFFRLLQ 187 (203)
Q Consensus 181 ~~~~i~~ 187 (203)
+|++|.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999864
No 114
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.96 E-value=4.7e-28 Score=173.34 Aligned_cols=157 Identities=27% Similarity=0.491 Sum_probs=130.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
...++|+++|+.||||||++++|..+.... ..||.+ +....+.+++ +.+.+||.+|+..++..|+.|+.++|++|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g--~~~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIG--FNIEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESS--EEEEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccc--cccceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence 567999999999999999999999876544 335544 4455556655 56899999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHH------cCCeEEEEecCCCCCH
Q 048709 106 VVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAED------QGLFFSEASALNGDNV 178 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~sa~~~~~i 178 (203)
||+|.++.+.+......+..+..... .++|+++++||.|+++ ....+++...... ..+.++.|||.+|.|+
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv 164 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGV 164 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTH
T ss_pred EEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCcCH
Confidence 99999999888888888777766544 6899999999999987 5677777766542 3456999999999999
Q ss_pred HHHHHHHHHHH
Q 048709 179 DTAFFRLLQEI 189 (203)
Q Consensus 179 ~~~~~~i~~~~ 189 (203)
.+.++||.+.+
T Consensus 165 ~e~l~WL~~~~ 175 (175)
T PF00025_consen 165 DEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999999865
No 115
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.96 E-value=3.3e-28 Score=171.77 Aligned_cols=152 Identities=25% Similarity=0.486 Sum_probs=119.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD 109 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 109 (203)
+|+++|++|||||||++++.++.+... .++.+... ..+... ..+.+.+||+||+..+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999999887543 35554433 333333 34689999999999999889999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHH------HHcCCeEEEEecCCCCCHHHHH
Q 048709 110 ITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFA------EDQGLFFSEASALNGDNVDTAF 182 (203)
Q Consensus 110 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~sa~~~~~i~~~~ 182 (203)
++++.++.....|+..+.+... .+.|+++|+||+|+.. ....+++.... ...++++++|||++|.|++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG--ALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccccc--CcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 9999999888888877765433 6799999999999865 23344443322 1234579999999999999999
Q ss_pred HHHHH
Q 048709 183 FRLLQ 187 (203)
Q Consensus 183 ~~i~~ 187 (203)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99864
No 116
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.96 E-value=6.2e-28 Score=171.50 Aligned_cols=152 Identities=25% Similarity=0.440 Sum_probs=118.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC------ccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEF------CFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 103 (203)
+|+++|++|+|||||+++|.+... ...+.++.+... ..+.++ ...+.+|||||+..+..++..++..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999976432 112234443333 334444 4678999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHH-------cCCeEEEEecCCC
Q 048709 104 AVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAED-------QGLFFSEASALNG 175 (203)
Q Consensus 104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~sa~~~ 175 (203)
+++|+|+++++++.....++..+.+... .++|+++++||+|+.. ....+++.++... .+++++++||++|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD--ALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc--CCCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 9999999999888888888877765433 6799999999999876 3455555555433 3468999999999
Q ss_pred CCHHHHHHHHHH
Q 048709 176 DNVDTAFFRLLQ 187 (203)
Q Consensus 176 ~~i~~~~~~i~~ 187 (203)
.|+++++++|.+
T Consensus 155 ~gv~e~~~~l~~ 166 (167)
T cd04160 155 TGVREGIEWLVE 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 999999999864
No 117
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.96 E-value=7.9e-28 Score=174.54 Aligned_cols=155 Identities=22% Similarity=0.336 Sum_probs=126.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
...+|+++|++|||||||++++.+..+. .+.++.+. ....+.+++ +.+.+||+||+..+...+..+++++|++++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~--~~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHP--TSEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4699999999999999999999987764 34445443 334455554 678999999999988888899999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHH----------------cCCeEEE
Q 048709 107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAED----------------QGLFFSE 169 (203)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 169 (203)
|+|+++..++.....++..+..... .+.|+++++||+|+.. .+..+++.+.+.. ..+++++
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFM 170 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEEE
Confidence 9999999999888888887765443 6799999999999865 5667777776643 2246899
Q ss_pred EecCCCCCHHHHHHHHHHH
Q 048709 170 ASALNGDNVDTAFFRLLQE 188 (203)
Q Consensus 170 ~sa~~~~~i~~~~~~i~~~ 188 (203)
|||++|.|++++|+++.+.
T Consensus 171 ~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 171 CSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred eEecCCCChHHHHHHHHhh
Confidence 9999999999999999875
No 118
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.96 E-value=4.8e-30 Score=175.82 Aligned_cols=180 Identities=31% Similarity=0.482 Sum_probs=165.5
Q ss_pred cCCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhh
Q 048709 19 KMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYY 98 (203)
Q Consensus 19 ~~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~ 98 (203)
.|.+...+..+|++++|..++||||+|++++.+-+...+..+.++++....+.+++..+...+||++|++.|+.+..+|+
T Consensus 11 am~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyy 90 (246)
T KOG4252|consen 11 AMDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYY 90 (246)
T ss_pred CCCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHh
Confidence 34556677889999999999999999999999999999999999999998888888888889999999999999999999
Q ss_pred cCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 048709 99 RGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNV 178 (203)
Q Consensus 99 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 178 (203)
+++.+.++||+-++..||+.+..|++.+.... .++|.++|-||+|+.++..+..+++...++.....++.+|++...|+
T Consensus 91 rgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV 169 (246)
T KOG4252|consen 91 RGAQASVLVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNV 169 (246)
T ss_pred ccccceEEEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence 99999999999999999999999999987765 67999999999999998889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccc
Q 048709 179 DTAFFRLLQEIYALSKKELEC 199 (203)
Q Consensus 179 ~~~~~~i~~~~~~~~~~~~~~ 199 (203)
..+|..+++++....+..+..
T Consensus 170 ~~vF~YLaeK~~q~~kq~~~~ 190 (246)
T KOG4252|consen 170 MHVFAYLAEKLTQQKKQSLNA 190 (246)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 999999999998876665443
No 119
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=1.4e-27 Score=169.85 Aligned_cols=151 Identities=23% Similarity=0.377 Sum_probs=120.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD 109 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 109 (203)
+|+++|.+|||||||++++.+. +...+.+|.+.. ...+..+ .+.+.+||+||+..+..++..|++++|++++|+|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999976 555555666543 3344444 4678999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHH------HHHc--CCeEEEEecCCC-----
Q 048709 110 ITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEF------AEDQ--GLFFSEASALNG----- 175 (203)
Q Consensus 110 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~------~~~~--~~~~~~~sa~~~----- 175 (203)
++++.+++.+..|+..+..... .++|+++|+||.|+.+. ....++.+. +... .+++++|||++|
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~ 153 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNA--LLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI 153 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCC--CCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence 9999999999999888876543 67999999999999763 333333332 2122 356888999998
Q ss_pred -CCHHHHHHHHHH
Q 048709 176 -DNVDTAFFRLLQ 187 (203)
Q Consensus 176 -~~i~~~~~~i~~ 187 (203)
.|+.+.|+||..
T Consensus 154 ~~g~~~~~~wl~~ 166 (167)
T cd04161 154 DPSIVEGLRWLLA 166 (167)
T ss_pred ccCHHHHHHHHhc
Confidence 899999999974
No 120
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.96 E-value=1.4e-27 Score=168.33 Aligned_cols=151 Identities=25% Similarity=0.403 Sum_probs=114.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD 109 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 109 (203)
||+++|.+++|||||++++..+.+.. ..++.+.+. ..+.. ..+++++|||||+..+..++..+++.+|++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNV--ETVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCe--EEEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998877643 335544433 23333 34788999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHHH
Q 048709 110 ITKRQSFDHVARGVEELRAH-ADSSIRIILIGNKSDLVDMWAVSAEDVVEFAE-----DQGLFFSEASALNGDNVDTAFF 183 (203)
Q Consensus 110 ~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~~ 183 (203)
++++.++.....++..+.+. ...+.|+++++||+|+.+. ....++.+... ..+.+++++||++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA--LSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC--CCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 99988887766666554332 2257899999999998753 23344433221 1235799999999999999999
Q ss_pred HHHH
Q 048709 184 RLLQ 187 (203)
Q Consensus 184 ~i~~ 187 (203)
++.+
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9865
No 121
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=1.8e-27 Score=171.75 Aligned_cols=155 Identities=19% Similarity=0.269 Sum_probs=123.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
..++|+++|.+|||||||++++.+..+.. +.++.+. ....+.++ .+++.+||+||+..+...+..++.++|++++
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~--~~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~ 90 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHP--TSEELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIVY 90 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCcccc--ceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 45999999999999999999999876643 2344333 23334444 3678999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHH------------cCCeEEEEecC
Q 048709 107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAED------------QGLFFSEASAL 173 (203)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~sa~ 173 (203)
|+|++++.++.....++..+..... .+.|+++++||+|+.. .++.+++.+.+.. ....+++|||+
T Consensus 91 vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~ 168 (184)
T smart00178 91 LVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVV 168 (184)
T ss_pred EEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeecc
Confidence 9999999999888888777665432 6789999999999875 5667777665421 13358999999
Q ss_pred CCCCHHHHHHHHHHH
Q 048709 174 NGDNVDTAFFRLLQE 188 (203)
Q Consensus 174 ~~~~i~~~~~~i~~~ 188 (203)
+|.|++++++||.++
T Consensus 169 ~~~g~~~~~~wl~~~ 183 (184)
T smart00178 169 RRMGYGEGFKWLSQY 183 (184)
T ss_pred cCCChHHHHHHHHhh
Confidence 999999999999865
No 122
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.96 E-value=2.9e-27 Score=166.59 Aligned_cols=151 Identities=25% Similarity=0.469 Sum_probs=120.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD 109 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 109 (203)
||+++|.+|||||||++++++... ....++.+... ..+.+. ...+.+||+||+..+...+..+++.+|++++|+|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999999874 33345544433 334443 4678999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHH-----cCCeEEEEecCCCCCHHHHHH
Q 048709 110 ITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAED-----QGLFFSEASALNGDNVDTAFF 183 (203)
Q Consensus 110 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~~~~ 183 (203)
+++++++.....++..+..... .+.|+++++||+|+... ...+++.+.... ..++++++||++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGA--LSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccc--cCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 9999999998888877766443 68999999999999763 344455444332 346899999999999999999
Q ss_pred HHHH
Q 048709 184 RLLQ 187 (203)
Q Consensus 184 ~i~~ 187 (203)
+|.+
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9875
No 123
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=2e-26 Score=164.72 Aligned_cols=143 Identities=34% Similarity=0.617 Sum_probs=129.0
Q ss_pred CCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhc
Q 048709 51 NEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHA 130 (203)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 130 (203)
+.+...+.+|.+.++....+.+++..+++.||||+|++.+..++..+++++|++|+|||++++++|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 34566778899999988888899999999999999999999999999999999999999999999999999999887765
Q ss_pred CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q 048709 131 DSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALS 193 (203)
Q Consensus 131 ~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~~ 193 (203)
...+|+++|+||+|+.+.+.+..++...++...++.+++|||++|.|++++|++|++.+.+..
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 567899999999999776678888899999989999999999999999999999999987643
No 124
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.95 E-value=5.9e-28 Score=171.17 Aligned_cols=165 Identities=30% Similarity=0.472 Sum_probs=149.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC-CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN-SKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
..+|++|||..++|||+|+-.+..+.++..+.||.. +.+...+.++ ++.+.+.+|||+|++.|+.+++..+.++|+++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 468999999999999999999999999999988886 6677778885 99999999999999999998888999999999
Q ss_pred EEEeCCCHHHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHHcC-CeEEEEe
Q 048709 106 VVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVDM------------WAVSAEDVVEFAEDQG-LFFSEAS 171 (203)
Q Consensus 106 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s 171 (203)
++|++.+++|++++ ..|+.++...+ +++|+|+|++|.|+.++ ..+..++..+.+++.| ..|++||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 99999999999997 68999888877 89999999999999742 3577888999999999 5799999
Q ss_pred cCCCCCHHHHHHHHHHHHHHhh
Q 048709 172 ALNGDNVDTAFFRLLQEIYALS 193 (203)
Q Consensus 172 a~~~~~i~~~~~~i~~~~~~~~ 193 (203)
|++..|++++|+..+.......
T Consensus 161 a~tq~~v~~vF~~a~~~~l~~~ 182 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALRPP 182 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhccc
Confidence 9999999999999999988754
No 125
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.95 E-value=2.3e-26 Score=155.46 Aligned_cols=159 Identities=23% Similarity=0.407 Sum_probs=131.0
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
++.++|+++|..||||||++++|.+.+.+... ||.+ +...++.+ +.+++++||.+|+...+..|+.||..+|++|
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~~~i~-pt~g--f~Iktl~~--~~~~L~iwDvGGq~~lr~~W~nYfestdglI 88 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDTDTIS-PTLG--FQIKTLEY--KGYTLNIWDVGGQKTLRSYWKNYFESTDGLI 88 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCccccC-Cccc--eeeEEEEe--cceEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence 45899999999999999999999998754333 5544 44445444 4478999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHH------HHHHHcCCeEEEEecCCCCCH
Q 048709 106 VVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVV------EFAEDQGLFFSEASALNGDNV 178 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~------~~~~~~~~~~~~~sa~~~~~i 178 (203)
||+|.+++..+++....+..+..-.. .+.|+++++||.|++. ....+++. +++....++++.||+.+|+++
T Consensus 89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~--~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l 166 (185)
T KOG0073|consen 89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG--ALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDL 166 (185)
T ss_pred EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--ccCHHHHHHhhCHHHhccccCceEEEEeccccccH
Confidence 99999999888888777766655433 6789999999999985 44555443 444667889999999999999
Q ss_pred HHHHHHHHHHHHH
Q 048709 179 DTAFFRLLQEIYA 191 (203)
Q Consensus 179 ~~~~~~i~~~~~~ 191 (203)
.+.++|++..+.+
T Consensus 167 ~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 167 LEGIDWLCDDLMS 179 (185)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998877
No 126
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.95 E-value=3.4e-26 Score=160.68 Aligned_cols=152 Identities=24% Similarity=0.466 Sum_probs=120.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD 109 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 109 (203)
.|+++|++|||||||+++|.+.++...+.++.+.... .....+ +.+.+||+||+..+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 3899999999999999999999888777777665544 233333 789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHH-----HHcCCeEEEEecCCCCCHHHHHH
Q 048709 110 ITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFA-----EDQGLFFSEASALNGDNVDTAFF 183 (203)
Q Consensus 110 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~~~~ 183 (203)
+++..++.....++..+..... .++|+++|+||+|+.+. ...+++.... ....++++++|+++|.|++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA--LSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC--cCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence 9999888888777776654332 67899999999998763 2233332222 12346789999999999999999
Q ss_pred HHHH
Q 048709 184 RLLQ 187 (203)
Q Consensus 184 ~i~~ 187 (203)
+|.+
T Consensus 155 ~l~~ 158 (159)
T cd04159 155 WLIK 158 (159)
T ss_pred HHhh
Confidence 9875
No 127
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=3.9e-26 Score=174.05 Aligned_cols=140 Identities=27% Similarity=0.456 Sum_probs=121.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC-------------CEEEEEEEEeCCCchhhhh
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN-------------SKIIKAQIWDTAGQERYRA 92 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~D~~g~~~~~~ 92 (203)
...+||+|+|..|||||||+++|.++.+...+.+|.+.++....+.++ +..+.+.||||+|++.|..
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs 98 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD 98 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence 356999999999999999999999998888888898888877777664 2568899999999999999
Q ss_pred hhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcC------------CCCcEEEEEeCCCCCccc---C---CCHH
Q 048709 93 VTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD------------SSIRIILIGNKSDLVDMW---A---VSAE 154 (203)
Q Consensus 93 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~p~ivv~nK~D~~~~~---~---~~~~ 154 (203)
++..|+++++++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+...+ . +..+
T Consensus 99 L~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e 178 (334)
T PLN00023 99 CRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVD 178 (334)
T ss_pred hhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHH
Confidence 999999999999999999999999999999999877531 358999999999996542 1 3678
Q ss_pred HHHHHHHHcCC
Q 048709 155 DVVEFAEDQGL 165 (203)
Q Consensus 155 ~~~~~~~~~~~ 165 (203)
++++++...++
T Consensus 179 ~a~~~A~~~g~ 189 (334)
T PLN00023 179 AARQWVEKQGL 189 (334)
T ss_pred HHHHHHHHcCC
Confidence 99999998875
No 128
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.95 E-value=6.1e-26 Score=161.41 Aligned_cols=156 Identities=18% Similarity=0.192 Sum_probs=109.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh---------hhhHhhhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR---------AVTSAYYR 99 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~~~~ 99 (203)
.+|+++|.+|+|||||+++|.+..+.....+..+.......... ..+.+++|||||..... ........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 37999999999999999999998765332222223333323222 34789999999973210 11111223
Q ss_pred CCcEEEEEEeCCCHHH--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 048709 100 GALGAVVVYDITKRQS--FDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDN 177 (203)
Q Consensus 100 ~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 177 (203)
.+|++++|+|+++..+ ++....|+..+.... .+.|+++|+||+|+.+.... .+..++......++++|||++|.|
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDL--SEIEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhH--HHHHHhhhhccCceEEEEecccCC
Confidence 4689999999998654 355556777665433 47899999999999764332 224555666678899999999999
Q ss_pred HHHHHHHHHHHH
Q 048709 178 VDTAFFRLLQEI 189 (203)
Q Consensus 178 i~~~~~~i~~~~ 189 (203)
++++++++.+.+
T Consensus 156 i~~l~~~l~~~~ 167 (168)
T cd01897 156 VDEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998876
No 129
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=7e-26 Score=162.72 Aligned_cols=154 Identities=20% Similarity=0.208 Sum_probs=111.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC-------CccCCCCC------cceeeEEEEEE--E---CCEEEEEEEEeCCCchhhh
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE-------FCFDSKST------IGVEFQTRTVT--I---NSKIIKAQIWDTAGQERYR 91 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~-------~~~~~~~~------~~~~~~~~~~~--~---~~~~~~~~l~D~~g~~~~~ 91 (203)
+|+++|.+++|||||+++|++.. +...+.++ .+.+....... + ++..+.+++|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 69999999999999999998742 11111111 12233332222 2 5667889999999999999
Q ss_pred hhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC---eEE
Q 048709 92 AVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL---FFS 168 (203)
Q Consensus 92 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~ 168 (203)
.....++..+|++++|+|+++..+......|.... ..++|+++|+||+|+.+. ...+...+++...++ .++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSA--DPERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcC--CHHHHHHHHHHHhCCCcccEE
Confidence 98999999999999999999876655554443322 246899999999998652 222233455555555 489
Q ss_pred EEecCCCCCHHHHHHHHHHHH
Q 048709 169 EASALNGDNVDTAFFRLLQEI 189 (203)
Q Consensus 169 ~~sa~~~~~i~~~~~~i~~~~ 189 (203)
++||++|.|++++++++.+.+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhC
Confidence 999999999999999998765
No 130
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.94 E-value=1.8e-25 Score=159.78 Aligned_cols=155 Identities=19% Similarity=0.369 Sum_probs=117.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
...++|+++|++|||||||++++.+..+.. ..++.+.. ...+..++ ..+.+||+||+..+...+..+++.+|+++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~--~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 86 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFN--IKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLI 86 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence 347999999999999999999999876543 33554433 33444444 56899999999888888888999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcC-----CeEEEEecCCCCCHH
Q 048709 106 VVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQG-----LFFSEASALNGDNVD 179 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~ 179 (203)
+|+|+++..++.....++..+..... .++|+++++||+|+.+. ...+++.+...... .+++++||++|.|++
T Consensus 87 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~ 164 (173)
T cd04155 87 YVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA--APAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQ 164 (173)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC--CCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHH
Confidence 99999998888887777666554332 57999999999998652 23333333222111 247899999999999
Q ss_pred HHHHHHHH
Q 048709 180 TAFFRLLQ 187 (203)
Q Consensus 180 ~~~~~i~~ 187 (203)
++|+||.+
T Consensus 165 ~~~~~l~~ 172 (173)
T cd04155 165 EGMNWVCK 172 (173)
T ss_pred HHHHHHhc
Confidence 99999975
No 131
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=4.4e-26 Score=162.40 Aligned_cols=157 Identities=18% Similarity=0.145 Sum_probs=112.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCch----hhhhhhHhh---hcCCc
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE----RYRAVTSAY---YRGAL 102 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----~~~~~~~~~---~~~~d 102 (203)
+|+++|.+|||||||+++|.+.+......+..+.......+.+++. ..+.+|||||.. .+..+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 5899999999999999999986643222232233333333444332 478999999953 222233333 44699
Q ss_pred EEEEEEeCCCH-HHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCcccCCCHHHHHHHHHH-cCCeEEEEecCCCCCH
Q 048709 103 GAVVVYDITKR-QSFDHVARGVEELRAHAD--SSIRIILIGNKSDLVDMWAVSAEDVVEFAED-QGLFFSEASALNGDNV 178 (203)
Q Consensus 103 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i 178 (203)
++++|+|++++ ++++.+..|.+.+..... .++|+++|+||+|+.+... ..+....+... ...+++++||+++.|+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEE-LFELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchh-hHHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 99999999998 788888888887766543 4689999999999876432 23344455555 3788999999999999
Q ss_pred HHHHHHHHHH
Q 048709 179 DTAFFRLLQE 188 (203)
Q Consensus 179 ~~~~~~i~~~ 188 (203)
+++|+++.+.
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 132
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.94 E-value=7.1e-26 Score=166.07 Aligned_cols=157 Identities=20% Similarity=0.178 Sum_probs=115.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh---------hhhhhHh
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER---------YRAVTSA 96 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~ 96 (203)
+..++|+|+|++|||||||++++++........+..+.+.....+.+++. ..+.+|||||... +.... .
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence 44589999999999999999999998754443344444445555555443 2689999999622 22221 2
Q ss_pred hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCC
Q 048709 97 YYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGD 176 (203)
Q Consensus 97 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 176 (203)
.+..+|++++|+|++++.++.....|...+......+.|+++|+||+|+.+... ....+.....+++++||++|.
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~-----~~~~~~~~~~~~~~~Sa~~~~ 191 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEE-----LEERLEAGRPDAVFISAKTGE 191 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHH-----HHHHhhcCCCceEEEEcCCCC
Confidence 367899999999999988887776666666555446789999999999876321 114455567789999999999
Q ss_pred CHHHHHHHHHHHH
Q 048709 177 NVDTAFFRLLQEI 189 (203)
Q Consensus 177 ~i~~~~~~i~~~~ 189 (203)
|+++++++|.+.+
T Consensus 192 gi~~l~~~L~~~~ 204 (204)
T cd01878 192 GLDELLEAIEELL 204 (204)
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998753
No 133
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.94 E-value=1.9e-25 Score=173.69 Aligned_cols=162 Identities=17% Similarity=0.073 Sum_probs=123.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh-------hhhhhHhhhcCC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER-------YRAVTSAYYRGA 101 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~~ 101 (203)
-.|+++|.||||||||+++|++.+......+.++..+..-.+.+. ...++.+||+||... ....+..+++.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 468999999999999999999866554444555666666666553 224589999999632 222333456789
Q ss_pred cEEEEEEeCCCHHHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 048709 102 LGAVVVYDITKRQSFDHVARGVEELRAHAD--SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVD 179 (203)
Q Consensus 102 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 179 (203)
+++++|+|+++.++++.+..|...+..... .++|+++|+||+|+.+......+....++...+.+++++||+++.|++
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~ 317 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD 317 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence 999999999987788888888888876643 478999999999997644333344555555667899999999999999
Q ss_pred HHHHHHHHHHHH
Q 048709 180 TAFFRLLQEIYA 191 (203)
Q Consensus 180 ~~~~~i~~~~~~ 191 (203)
+++++|.+.+..
T Consensus 318 eL~~~L~~~l~~ 329 (335)
T PRK12299 318 ELLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHHh
Confidence 999999988765
No 134
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.94 E-value=6.9e-25 Score=153.70 Aligned_cols=158 Identities=34% Similarity=0.499 Sum_probs=125.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 107 (203)
.+||+++|.+|||||||++++.+......+.++.+.+.....+..++..+.+.+||+||+..+...+..++..+++++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999999887667767777777776677777778899999999999988888889999999999
Q ss_pred EeCCCH-HHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709 108 YDITKR-QSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (203)
Q Consensus 108 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 185 (203)
+|.... .++.... .+...+......+.|+++++||+|+.... ........+......+++++||++|.|+.+++++|
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 998876 5555554 55555555544488999999999997632 33333333444456789999999999999999876
Q ss_pred H
Q 048709 186 L 186 (203)
Q Consensus 186 ~ 186 (203)
.
T Consensus 160 ~ 160 (161)
T TIGR00231 160 E 160 (161)
T ss_pred h
Confidence 3
No 135
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.94 E-value=4.6e-25 Score=156.05 Aligned_cols=152 Identities=19% Similarity=0.185 Sum_probs=106.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC---CccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNE---FCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
+.|+++|.+|+|||||+++|++.. +.....++.+.+.....+.+.+ ...+.+|||||++.+......++.++|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 468999999999999999999743 2222233444444444444442 357899999999988777777889999999
Q ss_pred EEEeCCC---HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc--CCCHHHHHHHHHH---cCCeEEEEecCCCCC
Q 048709 106 VVYDITK---RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW--AVSAEDVVEFAED---QGLFFSEASALNGDN 177 (203)
Q Consensus 106 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~---~~~~~~~~sa~~~~~ 177 (203)
+|+|+++ +++.+.+. .+... ...|+++++||+|+.+.. ....+++.+.+.. .+.+++++||++|.|
T Consensus 80 ~V~d~~~~~~~~~~~~~~----~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 80 LVVAADEGIMPQTREHLE----ILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred EEEECCCCccHhHHHHHH----HHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence 9999987 33433322 22211 124899999999997532 1123444555544 467899999999999
Q ss_pred HHHHHHHHHH
Q 048709 178 VDTAFFRLLQ 187 (203)
Q Consensus 178 i~~~~~~i~~ 187 (203)
++++++.+.+
T Consensus 154 v~~l~~~l~~ 163 (164)
T cd04171 154 IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 136
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.4e-25 Score=153.45 Aligned_cols=160 Identities=22% Similarity=0.388 Sum_probs=135.4
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 104 (203)
.....+|+++|..++||||+++.|..+++... .||.+.......+ .++++.+||.+|+.+++.+|+.|+++.+++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcEE
Confidence 34579999999999999999999998887665 4776665554444 368899999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHc-----CCeEEEEecCCCCCH
Q 048709 105 VVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQ-----GLFFSEASALNGDNV 178 (203)
Q Consensus 105 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~sa~~~~~i 178 (203)
|||+|.++++.+..++..+..+..... .+.|+++.+||.|+++ ..+..++.+..... .+.+..|+|.+|+|+
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~--als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL 166 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG--ALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGL 166 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc--cCCHHHHHhHhhhhccCCCCcEEeeccccccccH
Confidence 999999999999999888888777665 7899999999999988 66777776665443 346888999999999
Q ss_pred HHHHHHHHHHHHH
Q 048709 179 DTAFFRLLQEIYA 191 (203)
Q Consensus 179 ~~~~~~i~~~~~~ 191 (203)
.+.++|+.+.+..
T Consensus 167 ~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 167 YEGLDWLSNNLKK 179 (181)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988754
No 137
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.93 E-value=1e-23 Score=156.18 Aligned_cols=165 Identities=39% Similarity=0.528 Sum_probs=135.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
+||+++|++|||||||+++|.+..+...+.++.+..+........+..+++.+|||+|++.++.++..|+.+++++++|+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~ 85 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY 85 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 99999999999999999999999999888888777777777666655888999999999999999999999999999999
Q ss_pred eCCC-HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc------------CCCHHHHHHHHHHc---CCeEEEEec
Q 048709 109 DITK-RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW------------AVSAEDVVEFAEDQ---GLFFSEASA 172 (203)
Q Consensus 109 d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~sa 172 (203)
|..+ ..+++....|...+........|+++++||+|+.... .............. ...++++|+
T Consensus 86 d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 165 (219)
T COG1100 86 DSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSA 165 (219)
T ss_pred ecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeec
Confidence 9999 5556666788888887766679999999999997652 22222222222222 234899999
Q ss_pred C--CCCCHHHHHHHHHHHHHHhh
Q 048709 173 L--NGDNVDTAFFRLLQEIYALS 193 (203)
Q Consensus 173 ~--~~~~i~~~~~~i~~~~~~~~ 193 (203)
+ .+.++.++|..+...+....
T Consensus 166 ~~~~~~~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 166 KSLTGPNVNELFKELLRKLLEEI 188 (219)
T ss_pred ccCCCcCHHHHHHHHHHHHHHhh
Confidence 9 99999999999999987643
No 138
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.93 E-value=5.2e-25 Score=152.47 Aligned_cols=148 Identities=19% Similarity=0.216 Sum_probs=108.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhh------hhhhHhhh--cC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY------RAVTSAYY--RG 100 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~------~~~~~~~~--~~ 100 (203)
++|+++|.||+|||||+|+|++........|..+.+.....+.+.+ ..+.++|+||..+. ......++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 6899999999999999999999998777778777877777777777 56789999994322 23334444 68
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 048709 101 ALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDT 180 (203)
Q Consensus 101 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 180 (203)
.|++++|+|+++.+.-. .+...+.. .++|+++++||+|......... +...+.+..++|++.+||+++.|+++
T Consensus 79 ~D~ii~VvDa~~l~r~l---~l~~ql~e---~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNL---YLTLQLLE---LGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SSEEEEEEEGGGHHHHH---HHHHHHHH---TTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CCEEEEECCCCCHHHHH---HHHHHHHH---cCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 99999999999854221 23333333 4799999999999876433322 35667777899999999999999999
Q ss_pred HHHHH
Q 048709 181 AFFRL 185 (203)
Q Consensus 181 ~~~~i 185 (203)
+++.|
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 98765
No 139
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.93 E-value=5.7e-25 Score=152.28 Aligned_cols=134 Identities=22% Similarity=0.197 Sum_probs=99.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCch-----hhhhhhHhhhcCCcEE
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE-----RYRAVTSAYYRGALGA 104 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-----~~~~~~~~~~~~~d~~ 104 (203)
||+++|.+|+|||||+++|.+..+. +.++.+ ..+.. .+|||||.. .+..+.. .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~-------~~~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA-------VEYND-----GAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--ccccee-------EEEcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 8999999999999999999987652 222221 12221 689999972 3444433 48999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHH
Q 048709 105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL-FFSEASALNGDNVDTAFF 183 (203)
Q Consensus 105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~ 183 (203)
++|+|++++.++.. ..|...+ ..|+++|+||+|+.+. ....+++.+++...+. +++++||++|.|++++|+
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAEA-DVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCCc-ccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 99999999887654 2343321 2389999999998652 4456677788877776 799999999999999998
Q ss_pred HHH
Q 048709 184 RLL 186 (203)
Q Consensus 184 ~i~ 186 (203)
++.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 140
>PRK04213 GTP-binding protein; Provisional
Probab=99.93 E-value=4.3e-25 Score=161.57 Aligned_cols=156 Identities=23% Similarity=0.250 Sum_probs=106.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCC-----------chhhhhhh
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG-----------QERYRAVT 94 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g-----------~~~~~~~~ 94 (203)
...++|+++|.+|+|||||+|+|.+..+.....+. .+.....+... .+.+||||| ++.+...+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~--~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPG--VTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCc--eeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 35689999999999999999999988765444443 33333333332 588999999 45666665
Q ss_pred Hhhhc----CCcEEEEEEeCCCHHHH----H------HHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHH
Q 048709 95 SAYYR----GALGAVVVYDITKRQSF----D------HVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFA 160 (203)
Q Consensus 95 ~~~~~----~~d~~i~v~d~~~~~s~----~------~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~ 160 (203)
..++. .++++++|+|.++.... . .-..++..+. ..++|+++|+||+|+.+.. .+...+++
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~~~ 154 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDEIA 154 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHHHH
Confidence 55553 45788889988653221 0 0011122222 2478999999999986532 33445555
Q ss_pred HHcCC---------eEEEEecCCCCCHHHHHHHHHHHHHHhhc
Q 048709 161 EDQGL---------FFSEASALNGDNVDTAFFRLLQEIYALSK 194 (203)
Q Consensus 161 ~~~~~---------~~~~~sa~~~~~i~~~~~~i~~~~~~~~~ 194 (203)
...++ +++++||++| |+++++++|.+.+.+..+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~ 196 (201)
T PRK04213 155 ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKR 196 (201)
T ss_pred HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCccc
Confidence 55543 5899999999 999999999998765544
No 141
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.93 E-value=8.7e-24 Score=146.83 Aligned_cols=153 Identities=42% Similarity=0.703 Sum_probs=120.8
Q ss_pred EEcCCCCcHHHHHHHHhcCCC-ccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCC
Q 048709 33 VIGDSAVGKSQILSRFTKNEF-CFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDIT 111 (203)
Q Consensus 33 vvG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 111 (203)
++|++|+|||||++++.+... .....++. .+.........+....+.+||+||...+......+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999999877 34443444 6666666666677889999999999888887788999999999999999
Q ss_pred CHHHHHHHHHHH-HHHHhhcCCCCcEEEEEeCCCCCcccCCCHHH-HHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709 112 KRQSFDHVARGV-EELRAHADSSIRIILIGNKSDLVDMWAVSAED-VVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (203)
Q Consensus 112 ~~~s~~~~~~~~-~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 186 (203)
++.++.....|+ .........+.|+++++||+|+.......... ..........+++++|++++.|+.+++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 999988887763 22333344789999999999987643222222 3445566678999999999999999999875
No 142
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.93 E-value=4.7e-24 Score=167.19 Aligned_cols=154 Identities=20% Similarity=0.175 Sum_probs=114.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCc---------hhhhhhhHhh
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ---------ERYRAVTSAY 97 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~---------~~~~~~~~~~ 97 (203)
..++|+++|.+|+|||||+|+|++.+......+..+.++....+.+++ ...+.+|||+|. +.|.... ..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-EE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence 458999999999999999999999876544445556677777777743 247899999996 2233322 24
Q ss_pred hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 048709 98 YRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDN 177 (203)
Q Consensus 98 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 177 (203)
+.++|++++|+|++++.+.+.+..|...+......+.|+++|+||+|+.... ++... .....+++++||++|.|
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~-----~v~~~-~~~~~~~i~iSAktg~G 339 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEP-----RIERL-EEGYPEAVFVSAKTGEG 339 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChH-----hHHHH-HhCCCCEEEEEccCCCC
Confidence 7899999999999998887777666655555444578999999999986521 22222 12234689999999999
Q ss_pred HHHHHHHHHHH
Q 048709 178 VDTAFFRLLQE 188 (203)
Q Consensus 178 i~~~~~~i~~~ 188 (203)
+++++++|.+.
T Consensus 340 I~eL~~~I~~~ 350 (351)
T TIGR03156 340 LDLLLEAIAER 350 (351)
T ss_pred HHHHHHHHHhh
Confidence 99999988764
No 143
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.93 E-value=5.4e-25 Score=146.24 Aligned_cols=157 Identities=21% Similarity=0.389 Sum_probs=130.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 107 (203)
.+.+.++|..+||||||+|.+..+.+.....|+.|...+. +....+.+.+||.||+..|+.+|+.|+++++++++|
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk----~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE----eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 5889999999999999999999999988888887765443 333557889999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHH-----HHcCCeEEEEecCCCCCHHHH
Q 048709 108 YDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFA-----EDQGLFFSEASALNGDNVDTA 181 (203)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~~ 181 (203)
+|+.+++.+.-.+..+..+..+.. .++|+++++||.|+++ .....++..-. ....+..|.+|+++..|++.+
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~--AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~ 173 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG--ALSKIALIERMGLSSITDREVCCFSISCKEKVNIDIT 173 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc--cccHHHHHHHhCccccccceEEEEEEEEcCCccHHHH
Confidence 999999888888777777766666 8899999999999987 44444443322 123356899999999999999
Q ss_pred HHHHHHHHH
Q 048709 182 FFRLLQEIY 190 (203)
Q Consensus 182 ~~~i~~~~~ 190 (203)
.+|++++.-
T Consensus 174 ~~Wli~hsk 182 (186)
T KOG0075|consen 174 LDWLIEHSK 182 (186)
T ss_pred HHHHHHHhh
Confidence 999998754
No 144
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.92 E-value=6.3e-24 Score=165.13 Aligned_cols=159 Identities=19% Similarity=0.124 Sum_probs=117.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhh-------hhhhHhhhcCC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY-------RAVTSAYYRGA 101 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~~~ 101 (203)
-.|+++|.|+||||||+++|++........+.++..+....+.+++ ..++.+||+||.... ......++..+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 5789999999999999999998765444445555666666666653 356899999996421 12222345679
Q ss_pred cEEEEEEeCCCH---HHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCC
Q 048709 102 LGAVVVYDITKR---QSFDHVARGVEELRAHAD--SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGD 176 (203)
Q Consensus 102 d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 176 (203)
+++++|+|+++. +.++.+..|.+.+..... .+.|+++|+||+|+..... ..+....+....+.+++++||+++.
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~ 315 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGE 315 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCc
Confidence 999999999976 577777777777665533 4789999999999976422 2233445555667889999999999
Q ss_pred CHHHHHHHHHHHH
Q 048709 177 NVDTAFFRLLQEI 189 (203)
Q Consensus 177 ~i~~~~~~i~~~~ 189 (203)
|+++++++|.+.+
T Consensus 316 GI~eL~~~I~~~l 328 (329)
T TIGR02729 316 GLDELLYALAELL 328 (329)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998754
No 145
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.92 E-value=6.3e-24 Score=149.41 Aligned_cols=148 Identities=17% Similarity=0.159 Sum_probs=111.5
Q ss_pred EEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhh------hhHhhhc--CCcEE
Q 048709 33 VIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRA------VTSAYYR--GALGA 104 (203)
Q Consensus 33 vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~~--~~d~~ 104 (203)
++|.+|+|||||++++.+........+..+.+.....+.+++ ..+.+|||||+..+.. +...++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999999875555556666666666666665 4689999999876553 3455564 99999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709 105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (203)
Q Consensus 105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 184 (203)
++|+|+++++... .++..+.. .++|+++++||+|+.+...... ....++...+++++++||++|.|+++++++
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 9999999865432 33333333 3689999999999976433333 345667777899999999999999999999
Q ss_pred HHHHH
Q 048709 185 LLQEI 189 (203)
Q Consensus 185 i~~~~ 189 (203)
+.+.+
T Consensus 152 l~~~~ 156 (158)
T cd01879 152 IAELA 156 (158)
T ss_pred HHHHh
Confidence 88753
No 146
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.92 E-value=6.8e-24 Score=150.74 Aligned_cols=157 Identities=18% Similarity=0.182 Sum_probs=109.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC-CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN-SKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
.|+++|.+|+|||||+++|....+.....++.+.+.....+..+ +....+.+|||||+..+..++..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999887765544444444333444433 13567899999999988888888899999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCC-HHHHHHHHH------HcCCeEEEEecCCCCCHHHH
Q 048709 109 DITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVS-AEDVVEFAE------DQGLFFSEASALNGDNVDTA 181 (203)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~------~~~~~~~~~sa~~~~~i~~~ 181 (203)
|+++....... ..+..+.. .++|+++|+||+|+....... .+....+.. ...++++++|+++|.|+.++
T Consensus 82 d~~~~~~~~~~-~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQTI-EAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHHHH-HHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 99874321111 11222222 468999999999986421101 111111111 12367999999999999999
Q ss_pred HHHHHHHHH
Q 048709 182 FFRLLQEIY 190 (203)
Q Consensus 182 ~~~i~~~~~ 190 (203)
+++|.+...
T Consensus 158 ~~~l~~~~~ 166 (168)
T cd01887 158 LEAILLLAE 166 (168)
T ss_pred HHHHHHhhh
Confidence 999987653
No 147
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.92 E-value=9.6e-24 Score=172.16 Aligned_cols=183 Identities=22% Similarity=0.190 Sum_probs=125.8
Q ss_pred CCCCCCccccccccccCCCCC------CCeeeEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEE
Q 048709 4 EMSGDGTDHRHQQQDKMIPDK------IDYVFKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKI 76 (203)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 76 (203)
+.|+.|++++...+....+.. ....++|+++|.+|+|||||+|+|++.+.. ....+.++.+.....+..++..
T Consensus 181 A~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~ 260 (472)
T PRK03003 181 ALHGRGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT 260 (472)
T ss_pred cCCCCCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE
Confidence 456777777765555444321 234699999999999999999999998753 3334555566655666666654
Q ss_pred EEEEEEeCCCc----------hhhhhhh-HhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 048709 77 IKAQIWDTAGQ----------ERYRAVT-SAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145 (203)
Q Consensus 77 ~~~~l~D~~g~----------~~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 145 (203)
+.+|||||. +.+..+. ..+++.+|++++|+|++++.++..+. ++..+.. .++|+++|+||+|+
T Consensus 261 --~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl 334 (472)
T PRK03003 261 --WRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDL 334 (472)
T ss_pred --EEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECccc
Confidence 579999994 2333332 24678999999999999987776663 3343333 57899999999999
Q ss_pred CcccCC--CHHHHHHH-HHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709 146 VDMWAV--SAEDVVEF-AEDQGLFFSEASALNGDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 146 ~~~~~~--~~~~~~~~-~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~ 192 (203)
.+.... ..+++.+. .....++++++||++|.|++++|+.+.+.+...
T Consensus 335 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~ 384 (472)
T PRK03003 335 VDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESW 384 (472)
T ss_pred CChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 652110 11122221 122347899999999999999999998876543
No 148
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.7e-23 Score=138.09 Aligned_cols=156 Identities=24% Similarity=0.462 Sum_probs=129.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
..++|+.+|..++||||++..|+....... .||++.. ..++++ +++.+++||.+|++..+.+|+.||.+..++||
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~-ipTvGFn--vetVty--kN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFN--VETVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCccc-cccccee--EEEEEe--eeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 379999999999999999999987665333 3665544 444444 56889999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHc-----CCeEEEEecCCCCCHHH
Q 048709 107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQ-----GLFFSEASALNGDNVDT 180 (203)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~sa~~~~~i~~ 180 (203)
|+|..+.+..+..+..+..+..... ...|+++.+||.|++. ...++++..+.... .+.+.++++.+|.|+.+
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~--A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPD--AMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccc--ccCHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence 9999998888888777666655544 6799999999999998 67888888876543 35689999999999999
Q ss_pred HHHHHHHHH
Q 048709 181 AFFRLLQEI 189 (203)
Q Consensus 181 ~~~~i~~~~ 189 (203)
-|.|+.+.+
T Consensus 169 glswlsnn~ 177 (180)
T KOG0071|consen 169 GLSWLSNNL 177 (180)
T ss_pred HHHHHHhhc
Confidence 999998764
No 149
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.92 E-value=1.6e-23 Score=159.59 Aligned_cols=155 Identities=17% Similarity=0.105 Sum_probs=105.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh--------hhhHhhhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR--------AVTSAYYRGA 101 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------~~~~~~~~~~ 101 (203)
+|+++|.+|+|||||+|+|++.+....+....++......+...+. .++.+|||||..... .....++..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~-~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA-SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC-cEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 6899999999999999999998865433222222222233322222 468999999964321 1134567899
Q ss_pred cEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC-eEEEEecCCCCCHHH
Q 048709 102 LGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL-FFSEASALNGDNVDT 180 (203)
Q Consensus 102 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~ 180 (203)
|++++|+|+++..+.. ..++..+.. .+.|+++|+||+|+.+.. ...+....++...+. +++++||++|.|+++
T Consensus 81 Dvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~ 154 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKD-KLLPLIDKYAILEDFKDIVPISALTGDNTSF 154 (270)
T ss_pred CEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHH-HHHHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence 9999999999866553 233333333 468999999999986421 122333444444444 799999999999999
Q ss_pred HHHHHHHHHHH
Q 048709 181 AFFRLLQEIYA 191 (203)
Q Consensus 181 ~~~~i~~~~~~ 191 (203)
+++++.+.+.+
T Consensus 155 L~~~l~~~l~~ 165 (270)
T TIGR00436 155 LAAFIEVHLPE 165 (270)
T ss_pred HHHHHHHhCCC
Confidence 99999887654
No 150
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=2e-23 Score=151.97 Aligned_cols=148 Identities=17% Similarity=0.193 Sum_probs=103.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc--CCCccCC------------CCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhh
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK--NEFCFDS------------KSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVT 94 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 94 (203)
.+|+++|.+++|||||+++|+. +.+.... ..+.+.+.......++...+.+.+|||||++.|....
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999987 4433222 1223344444444455556789999999999999999
Q ss_pred HhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC-CCHHHHHHHHH-------HcCCe
Q 048709 95 SAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA-VSAEDVVEFAE-------DQGLF 166 (203)
Q Consensus 95 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~ 166 (203)
..+++++|++++|+|+++.. +.....++..+.. .++|+++++||+|+..... ...+++.++.. ..+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999998732 2222233333322 4789999999999965321 12334444442 23678
Q ss_pred EEEEecCCCCCHHH
Q 048709 167 FSEASALNGDNVDT 180 (203)
Q Consensus 167 ~~~~sa~~~~~i~~ 180 (203)
++++||++|.|+.+
T Consensus 159 iv~~Sa~~g~~~~~ 172 (194)
T cd01891 159 VLYASAKNGWASLN 172 (194)
T ss_pred EEEeehhccccccc
Confidence 99999999987743
No 151
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.91 E-value=1.2e-23 Score=150.49 Aligned_cols=155 Identities=22% Similarity=0.177 Sum_probs=107.9
Q ss_pred EEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhh----hhh---hHhhhcCCcEEE
Q 048709 33 VIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY----RAV---TSAYYRGALGAV 105 (203)
Q Consensus 33 vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----~~~---~~~~~~~~d~~i 105 (203)
++|++|||||||+++|.+.+......+.++..+....+.+++ ...+.+|||||.... ..+ ...+++.+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999999875322223333344434444441 356799999996321 112 234578899999
Q ss_pred EEEeCCCH------HHHHHHHHHHHHHHhhcC-------CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEec
Q 048709 106 VVYDITKR------QSFDHVARGVEELRAHAD-------SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASA 172 (203)
Q Consensus 106 ~v~d~~~~------~s~~~~~~~~~~~~~~~~-------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa 172 (203)
+|+|++++ .++.....|...+..... .+.|+++|+||+|+..................+.+++++||
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA 159 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence 99999987 467777777666654432 37899999999999764333222223344456678999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 048709 173 LNGDNVDTAFFRLLQE 188 (203)
Q Consensus 173 ~~~~~i~~~~~~i~~~ 188 (203)
+++.|++++++++...
T Consensus 160 ~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 160 KTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhcCHHHHHHHHHhh
Confidence 9999999999988764
No 152
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.91 E-value=4.5e-23 Score=144.69 Aligned_cols=146 Identities=22% Similarity=0.222 Sum_probs=105.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCcc-CCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhh--------hhHhhhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCF-DSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRA--------VTSAYYR 99 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~ 99 (203)
++|+++|++|+|||||++++++..... ...+..+..........++ ..+.+|||||...+.. ....++.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 689999999999999999999876532 2223433444444444443 5689999999644321 1234678
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 048709 100 GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVD 179 (203)
Q Consensus 100 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 179 (203)
.+|++++|+|++++.+......+.. ..+.|+++++||+|+.+.... .......+++++||+++.|++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 9999999999998766655533322 357899999999999764322 344556789999999999999
Q ss_pred HHHHHHHHHH
Q 048709 180 TAFFRLLQEI 189 (203)
Q Consensus 180 ~~~~~i~~~~ 189 (203)
+++++|.+.+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999987753
No 153
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=1.9e-22 Score=160.74 Aligned_cols=158 Identities=20% Similarity=0.177 Sum_probs=116.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh----hhhhhHh---hhcCCc
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER----YRAVTSA---YYRGAL 102 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~---~~~~~d 102 (203)
.|+++|.|+||||||+++|++.+......+.++..+....+.++. ...+++||+||... ...+... ++..++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 899999999999999999998765444445555555555555441 34689999999632 1122233 356799
Q ss_pred EEEEEEeCCCH---HHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 048709 103 GAVVVYDITKR---QSFDHVARGVEELRAHAD--SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDN 177 (203)
Q Consensus 103 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 177 (203)
++++|+|+++. +.++....|...+..... .+.|+++|+||+|+.. ..+.+.++....+.+++++||+++.|
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iSA~tgeG 314 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPISALTGQG 314 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEeCCCCCC
Confidence 99999999864 566666677777766543 4789999999999843 23455666666668899999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 048709 178 VDTAFFRLLQEIYAL 192 (203)
Q Consensus 178 i~~~~~~i~~~~~~~ 192 (203)
+++++++|.+.+...
T Consensus 315 I~eL~~~L~~~l~~~ 329 (424)
T PRK12297 315 LDELLYAVAELLEET 329 (424)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999888664
No 154
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.91 E-value=4.9e-23 Score=138.38 Aligned_cols=114 Identities=30% Similarity=0.551 Sum_probs=88.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCc--cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFC--FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 107 (203)
||+|+|.+|||||||+++|++.... ....++.+.+..............+.+||++|++.+......++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998876 22233444555555666777777799999999998888877889999999999
Q ss_pred EeCCCHHHHHHHHHH---HHHHHhhcCCCCcEEEEEeCCC
Q 048709 108 YDITKRQSFDHVARG---VEELRAHADSSIRIILIGNKSD 144 (203)
Q Consensus 108 ~d~~~~~s~~~~~~~---~~~~~~~~~~~~p~ivv~nK~D 144 (203)
||++++.+++.+..+ +..+.... .++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence 999999999997555 44444433 5699999999998
No 155
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.91 E-value=8e-23 Score=147.79 Aligned_cols=154 Identities=19% Similarity=0.159 Sum_probs=109.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccCCCCC----------------cceeeEEEEEEECCEEEEEEEEeCCCchhhhhh
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKST----------------IGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV 93 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 93 (203)
+|+|+|.+|+|||||+++|++.......... .+.......+... ...+.+|||||...+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 4899999999999999999987765443221 1222222223332 467899999999888888
Q ss_pred hHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC--CCHHHHHHHHHH---------
Q 048709 94 TSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA--VSAEDVVEFAED--------- 162 (203)
Q Consensus 94 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~--------- 162 (203)
+..++..+|++++|+|+.++.+.... .++..+.. .+.|+++++||+|+..... ...+.+.+....
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQTR-EHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 88899999999999999876543322 33333332 5789999999999975211 112333344333
Q ss_pred -----cCCeEEEEecCCCCCHHHHHHHHHHHH
Q 048709 163 -----QGLFFSEASALNGDNVDTAFFRLLQEI 189 (203)
Q Consensus 163 -----~~~~~~~~sa~~~~~i~~~~~~i~~~~ 189 (203)
...+++++||++|.|+++++.++.+.+
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 357899999999999999999998875
No 156
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.90 E-value=6.4e-23 Score=166.15 Aligned_cols=182 Identities=21% Similarity=0.180 Sum_probs=120.9
Q ss_pred CCCCCCccccccccccCCCCC------CCeeeEEEEEcCCCCcHHHHHHHHhcCCCcc-CCCCCcceeeEEEEEEECCEE
Q 048709 4 EMSGDGTDHRHQQQDKMIPDK------IDYVFKVVVIGDSAVGKSQILSRFTKNEFCF-DSKSTIGVEFQTRTVTINSKI 76 (203)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~vvG~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 76 (203)
+.|+.|++++........+.. ....++|+++|.+|+|||||+|+|++.+... ...+.++.+.....+..++.
T Consensus 142 a~~g~gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~- 220 (429)
T TIGR03594 142 AEHGRGIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK- 220 (429)
T ss_pred CCcCCChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc-
Confidence 445666666655544443221 2345899999999999999999999876432 22233444444444555553
Q ss_pred EEEEEEeCCCchhhhhh-----------hHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 048709 77 IKAQIWDTAGQERYRAV-----------TSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145 (203)
Q Consensus 77 ~~~~l~D~~g~~~~~~~-----------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 145 (203)
.+.+|||||...+... ...+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+
T Consensus 221 -~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~---~~~~iiiv~NK~Dl 295 (429)
T TIGR03594 221 -KYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDL-RIAGLILE---AGKALVIVVNKWDL 295 (429)
T ss_pred -EEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH---cCCcEEEEEECccc
Confidence 6789999996433211 12368899999999999987665554 23333332 47899999999999
Q ss_pred CcccCCCHHHHHHHHHH-----cCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709 146 VDMWAVSAEDVVEFAED-----QGLFFSEASALNGDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 146 ~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~ 192 (203)
... ....++..+.... ..++++++||++|.|++++|+++.+.+...
T Consensus 296 ~~~-~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 296 VKD-EKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred CCC-HHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 721 1122233222221 247899999999999999999999876543
No 157
>PRK15494 era GTPase Era; Provisional
Probab=99.90 E-value=7.5e-23 Score=160.16 Aligned_cols=156 Identities=21% Similarity=0.287 Sum_probs=108.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCC-CCcceeeEEEEEEECCEEEEEEEEeCCCchh-hhhhh-------Hh
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSK-STIGVEFQTRTVTINSKIIKAQIWDTAGQER-YRAVT-------SA 96 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~-------~~ 96 (203)
...++|+++|.+|||||||+|+|++..+....+ +.++.......+..++ .++.+|||||... +..+. ..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 345799999999999999999999988753221 2222333334445554 4679999999742 22211 23
Q ss_pred hhcCCcEEEEEEeCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcC--CeEEEEecC
Q 048709 97 YYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQG--LFFSEASAL 173 (203)
Q Consensus 97 ~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~ 173 (203)
.+.++|++++|+|..+. +.... .++..+.. .+.|.++|+||+|+.+. ...++.+++.... ..++++||+
T Consensus 128 ~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk 199 (339)
T PRK15494 128 SLHSADLVLLIIDSLKS--FDDITHNILDKLRS---LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL 199 (339)
T ss_pred HhhhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence 47899999999998752 33332 34444433 24677889999998652 2456666665544 679999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 048709 174 NGDNVDTAFFRLLQEIYA 191 (203)
Q Consensus 174 ~~~~i~~~~~~i~~~~~~ 191 (203)
+|.|+++++++|.+.+.+
T Consensus 200 tg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 200 SGKNIDGLLEYITSKAKI 217 (339)
T ss_pred CccCHHHHHHHHHHhCCC
Confidence 999999999999887654
No 158
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.90 E-value=2.1e-22 Score=162.13 Aligned_cols=154 Identities=24% Similarity=0.219 Sum_probs=115.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhh--------hHh
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV--------TSA 96 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~ 96 (203)
...++|+++|.+|+|||||+|+|++.... ....+.++.+.....+.+++ ..+.+|||||...+... ...
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 35689999999999999999999987643 23334555666666666766 45689999997543321 235
Q ss_pred hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCC
Q 048709 97 YYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGD 176 (203)
Q Consensus 97 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 176 (203)
+++.+|++++|+|++++.+++.. |+..+.. .+.|+++|+||+|+... +...++...+.+++++||++ .
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~ 346 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-L 346 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-C
Confidence 78999999999999988776654 5554432 46899999999999652 12344566778899999998 6
Q ss_pred CHHHHHHHHHHHHHHhh
Q 048709 177 NVDTAFFRLLQEIYALS 193 (203)
Q Consensus 177 ~i~~~~~~i~~~~~~~~ 193 (203)
|++++++.+.+.+.+..
T Consensus 347 gI~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 347 KIKALVDLLTQKINAFY 363 (442)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999887653
No 159
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.90 E-value=1.3e-22 Score=147.45 Aligned_cols=159 Identities=16% Similarity=0.087 Sum_probs=102.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC----CCc---cCCCCCcceeeEEEEEEEC------------CEEEEEEEEeCCCchh
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKN----EFC---FDSKSTIGVEFQTRTVTIN------------SKIIKAQIWDTAGQER 89 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~----~~~---~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~D~~g~~~ 89 (203)
++|+++|++++|||||+++|+.. .+. .+..+..+.......+.+. +....+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999873 111 1111222233332223332 3357899999999876
Q ss_pred hhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC--CCHHHHHHHHH------
Q 048709 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA--VSAEDVVEFAE------ 161 (203)
Q Consensus 90 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~------ 161 (203)
+........+.+|++++|+|+++.........+. +... .+.|+++++||+|+..... ...+++.+.+.
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5443334456789999999998743333222221 1121 2569999999999864211 11223322211
Q ss_pred -HcCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 048709 162 -DQGLFFSEASALNGDNVDTAFFRLLQEIYA 191 (203)
Q Consensus 162 -~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~ 191 (203)
..+++++++||++|.|++++++++.+.+..
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 235789999999999999999999988764
No 160
>PRK11058 GTPase HflX; Provisional
Probab=99.90 E-value=3e-22 Score=160.45 Aligned_cols=157 Identities=18% Similarity=0.180 Sum_probs=114.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhh--hhhhH------hhhcC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY--RAVTS------AYYRG 100 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--~~~~~------~~~~~ 100 (203)
.+|+++|.+|+|||||+|+|++.+......+..+.++....+.+.+. ..+.+|||+|.... ...+. ..+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 68999999999999999999998766555556666666666666542 25789999997331 22222 23689
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCe-EEEEecCCCCCHH
Q 048709 101 ALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVD 179 (203)
Q Consensus 101 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~ 179 (203)
+|++++|+|++++.+++.+..|...+......++|+++|+||+|+..... .... ....+.+ ++.+||++|.|++
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GId 351 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGIP 351 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCHH
Confidence 99999999999988777765554444444445789999999999864211 1111 1123444 5889999999999
Q ss_pred HHHHHHHHHHHH
Q 048709 180 TAFFRLLQEIYA 191 (203)
Q Consensus 180 ~~~~~i~~~~~~ 191 (203)
+++++|.+.+..
T Consensus 352 eL~e~I~~~l~~ 363 (426)
T PRK11058 352 LLFQALTERLSG 363 (426)
T ss_pred HHHHHHHHHhhh
Confidence 999999998854
No 161
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=1.1e-22 Score=166.01 Aligned_cols=156 Identities=22% Similarity=0.187 Sum_probs=108.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCcc-CCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh--------hhhhhHh
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCF-DSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER--------YRAVTSA 96 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~ 96 (203)
....+|+|+|.+|||||||+|+|++..... ...+..+.+........++ ..+.+|||||.+. +......
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~ 113 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEV 113 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHH
Confidence 445799999999999999999999876542 2333334444444444554 3578999999652 3334556
Q ss_pred hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCC
Q 048709 97 YYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGD 176 (203)
Q Consensus 97 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 176 (203)
+++.+|++++|+|+++..+... ..+...+.. .++|+++|+||+|+... ..+....+....+ ..+++||++|.
T Consensus 114 ~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~---~~~~~~~~~~g~~-~~~~iSA~~g~ 185 (472)
T PRK03003 114 AMRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERG---EADAAALWSLGLG-EPHPVSALHGR 185 (472)
T ss_pred HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCcc---chhhHHHHhcCCC-CeEEEEcCCCC
Confidence 7899999999999998655433 233333332 47899999999998642 1122222222223 35789999999
Q ss_pred CHHHHHHHHHHHHHH
Q 048709 177 NVDTAFFRLLQEIYA 191 (203)
Q Consensus 177 ~i~~~~~~i~~~~~~ 191 (203)
|++++|+++++.+.+
T Consensus 186 gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 186 GVGDLLDAVLAALPE 200 (472)
T ss_pred CcHHHHHHHHhhccc
Confidence 999999999988755
No 162
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=3.3e-22 Score=161.28 Aligned_cols=164 Identities=19% Similarity=0.084 Sum_probs=115.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhh-------hhhhHhhhcC
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY-------RAVTSAYYRG 100 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~~ 100 (203)
...|+|+|.||||||||+|+|++.+......+.++..+....+.+.+ .++++||+||.... ....-.++..
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 36799999999999999999998765554445555666666666655 46899999995321 1112235678
Q ss_pred CcEEEEEEeCCCH----HHHHHHHHHHHHHHhhc-----------CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC
Q 048709 101 ALGAVVVYDITKR----QSFDHVARGVEELRAHA-----------DSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL 165 (203)
Q Consensus 101 ~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~-----------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 165 (203)
+|++++|+|+++. +.+..+..+...+.... ....|+++|+||+|+++... ..+.+.......++
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e-l~e~l~~~l~~~g~ 315 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE-LAEFVRPELEARGW 315 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH-HHHHHHHHHHHcCC
Confidence 9999999999752 23334444434443332 14689999999999975322 12333444455678
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHhhc
Q 048709 166 FFSEASALNGDNVDTAFFRLLQEIYALSK 194 (203)
Q Consensus 166 ~~~~~sa~~~~~i~~~~~~i~~~~~~~~~ 194 (203)
+++++||+++.|+++++.+|.+.+...+.
T Consensus 316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~r~ 344 (500)
T PRK12296 316 PVFEVSAASREGLRELSFALAELVEEARA 344 (500)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999998876543
No 163
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.90 E-value=1.5e-22 Score=163.69 Aligned_cols=149 Identities=20% Similarity=0.208 Sum_probs=112.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhh--------hHhh
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV--------TSAY 97 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~ 97 (203)
..++|+++|.+|+|||||+|+|++.+.. ....+.++.++....+.+++ ..+.+|||||...+... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 4589999999999999999999987753 33335555666666666665 45799999997644322 2346
Q ss_pred hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 048709 98 YRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDN 177 (203)
Q Consensus 98 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 177 (203)
+..+|++++|+|++++.+++....|.. ..+.|+++|+||+|+....... ...+.+++++||++|.|
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG 357 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence 889999999999998877665433322 3578999999999997532211 34456899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 048709 178 VDTAFFRLLQEIYA 191 (203)
Q Consensus 178 i~~~~~~i~~~~~~ 191 (203)
++++++++.+.+..
T Consensus 358 I~~L~~~L~~~l~~ 371 (449)
T PRK05291 358 IDELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
No 164
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.90 E-value=1.8e-22 Score=142.10 Aligned_cols=140 Identities=19% Similarity=0.223 Sum_probs=100.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCc-----hhhhhhhHhhhcCCcEE
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ-----ERYRAVTSAYYRGALGA 104 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-----~~~~~~~~~~~~~~d~~ 104 (203)
+|+++|.+|+|||||+|+|.+... . ... +....+... .+|||||. ..+..+. ..+..+|++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~-~~~-------~~~v~~~~~----~~iDtpG~~~~~~~~~~~~~-~~~~~ad~i 68 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-L-ARK-------TQAVEFNDK----GDIDTPGEYFSHPRWYHALI-TTLQDVDML 68 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-c-Ccc-------ceEEEECCC----CcccCCccccCCHHHHHHHH-HHHhcCCEE
Confidence 799999999999999999886532 1 111 122223222 26999996 2222222 347899999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC--eEEEEecCCCCCHHHHH
Q 048709 105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL--FFSEASALNGDNVDTAF 182 (203)
Q Consensus 105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~sa~~~~~i~~~~ 182 (203)
++|+|+++..++.. .|+..+ ..+.|+++++||+|+.+ ...+.+.+++...++ |++++||++|.|++++|
T Consensus 69 l~v~d~~~~~s~~~--~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~ 139 (158)
T PRK15467 69 IYVHGANDPESRLP--AGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLV 139 (158)
T ss_pred EEEEeCCCcccccC--HHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHH
Confidence 99999998766422 333322 24678999999999864 345667777777774 89999999999999999
Q ss_pred HHHHHHHHHh
Q 048709 183 FRLLQEIYAL 192 (203)
Q Consensus 183 ~~i~~~~~~~ 192 (203)
+++.+.+...
T Consensus 140 ~~l~~~~~~~ 149 (158)
T PRK15467 140 DYLASLTKQE 149 (158)
T ss_pred HHHHHhchhh
Confidence 9998877543
No 165
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.90 E-value=6e-22 Score=144.30 Aligned_cols=164 Identities=17% Similarity=0.142 Sum_probs=108.4
Q ss_pred CCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCc----------hh
Q 048709 20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ----------ER 89 (203)
Q Consensus 20 ~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~ 89 (203)
+.....+..++|+++|.+|+|||||+++|++.++.....++.+.+........ ...+.+|||||. ..
T Consensus 16 ~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~ 92 (196)
T PRK00454 16 LEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEK 92 (196)
T ss_pred HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHH
Confidence 44455567899999999999999999999987644333344444333333222 257899999993 34
Q ss_pred hhhhhHhhhcCC---cEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCC--CHHHHHHHHHHcC
Q 048709 90 YRAVTSAYYRGA---LGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAV--SAEDVVEFAEDQG 164 (203)
Q Consensus 90 ~~~~~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~ 164 (203)
+..+...++... +++++|+|++++.+.... .....+. ..++|+++++||+|+.+..+. ..+++...+....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~ 168 (196)
T PRK00454 93 WQKLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK---EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGD 168 (196)
T ss_pred HHHHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHH---HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcC
Confidence 444555566544 678888888765333221 1112222 146889999999998653221 1223444444446
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHHHH
Q 048709 165 LFFSEASALNGDNVDTAFFRLLQEIY 190 (203)
Q Consensus 165 ~~~~~~sa~~~~~i~~~~~~i~~~~~ 190 (203)
.+++++||++|.|++++++.|.+.+.
T Consensus 169 ~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 169 DEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 78999999999999999998876653
No 166
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.89 E-value=1.3e-22 Score=142.43 Aligned_cols=146 Identities=18% Similarity=0.112 Sum_probs=100.2
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhh--------hhHhhhcCCc
Q 048709 32 VVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRA--------VTSAYYRGAL 102 (203)
Q Consensus 32 ~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~~d 102 (203)
+++|.+|+|||||+++|++.... ....+..+.+........++ ..+.+|||||...+.. ....++..+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 47999999999999999987532 12223333333444444444 5689999999766433 3345678899
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHH
Q 048709 103 GAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL-FFSEASALNGDNVDTA 181 (203)
Q Consensus 103 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~ 181 (203)
++++|+|+.+..+.... .....+.. .+.|+++|+||+|+.+.... ...+...+. +++++|+++|.|++++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence 99999999875443332 22222222 35899999999999763211 233344555 7899999999999999
Q ss_pred HHHHHHH
Q 048709 182 FFRLLQE 188 (203)
Q Consensus 182 ~~~i~~~ 188 (203)
++++.+.
T Consensus 150 ~~~l~~~ 156 (157)
T cd01894 150 LDAILEL 156 (157)
T ss_pred HHHHHhh
Confidence 9999875
No 167
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=8.1e-22 Score=156.29 Aligned_cols=160 Identities=17% Similarity=0.073 Sum_probs=115.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhh-------hhhhHhhhcCCc
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY-------RAVTSAYYRGAL 102 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~~~d 102 (203)
.|+++|.||||||||+|+|++.+......+.++..+..-.+.+++ ...+.++||||...- ......++..+|
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 799999999999999999998765555445555666666665542 235899999996431 122234578999
Q ss_pred EEEEEEeCC---CHHHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcC--CeEEEEecCCC
Q 048709 103 GAVVVYDIT---KRQSFDHVARGVEELRAHAD--SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQG--LFFSEASALNG 175 (203)
Q Consensus 103 ~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~ 175 (203)
++++|+|++ +.+.++....|+..+..... .+.|+++|+||+|+...... .+.+.++....+ .+++.+||+++
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAASG 318 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCCC
Confidence 999999998 44566666677776665432 46899999999998653222 233444444433 47899999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 048709 176 DNVDTAFFRLLQEIYA 191 (203)
Q Consensus 176 ~~i~~~~~~i~~~~~~ 191 (203)
.|+++++++|.+.+.+
T Consensus 319 ~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 319 LGVKELCWDLMTFIEE 334 (390)
T ss_pred cCHHHHHHHHHHHhhh
Confidence 9999999999988865
No 168
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.89 E-value=1.3e-21 Score=131.16 Aligned_cols=172 Identities=23% Similarity=0.299 Sum_probs=137.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccC--CCCCcceeeEEEEEEE-CCEEEEEEEEeCCCchhh-hhhhHhhhcCCc
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFD--SKSTIGVEFQTRTVTI-NSKIIKAQIWDTAGQERY-RAVTSAYYRGAL 102 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~-~~~~~~~~~~~d 102 (203)
...||+|+|..++|||+++++|..++..+. ..+|. .+.+...+.. .+..-++.|+||.|...+ ..+-+.|+..+|
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTi-EDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTI-EDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccch-hhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 458999999999999999999987654433 33444 3444444433 455567899999997666 667788999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Q 048709 103 GAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTA 181 (203)
Q Consensus 103 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 181 (203)
++++||+..+++||+.+..+-..+.+... ..+|+++++||+|+.+++++..+.+..+++...+..+++++.+..++-+.
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep 166 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP 166 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence 99999999999999887555445544433 67999999999999999899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-cccccc
Q 048709 182 FFRLLQEIYALS-KKELEC 199 (203)
Q Consensus 182 ~~~i~~~~~~~~-~~~~~~ 199 (203)
|..+...+...+ +..++.
T Consensus 167 f~~l~~rl~~pqskS~Fpl 185 (198)
T KOG3883|consen 167 FTYLASRLHQPQSKSTFPL 185 (198)
T ss_pred HHHHHHhccCCcccccCcc
Confidence 999998887643 344443
No 169
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.89 E-value=5.7e-22 Score=164.80 Aligned_cols=159 Identities=19% Similarity=0.194 Sum_probs=115.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC-------CccCCCC------CcceeeEEEEEE--E---CCEEEEEEEEeCCCchh
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNE-------FCFDSKS------TIGVEFQTRTVT--I---NSKIIKAQIWDTAGQER 89 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~--~---~~~~~~~~l~D~~g~~~ 89 (203)
-.+|+++|+.++|||||+++|+... +...+.. ..+.+.....+. + ++..+.++||||||+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 3689999999999999999998642 1111111 123444333332 2 46678999999999999
Q ss_pred hhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC---e
Q 048709 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL---F 166 (203)
Q Consensus 90 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~ 166 (203)
|......++..+|++++|+|+++..+......|...+. .++|+++++||+|+.+. ...+...++....++ .
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~--~~~~~~~el~~~lg~~~~~ 156 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSA--DPERVKKEIEEVIGLDASE 156 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCcc--CHHHHHHHHHHHhCCCcce
Confidence 99888999999999999999998665555555543322 36799999999998652 122223344444554 4
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709 167 FSEASALNGDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 167 ~~~~sa~~~~~i~~~~~~i~~~~~~~ 192 (203)
++++||++|.|++++|++|.+.+...
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 89999999999999999999887654
No 170
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.89 E-value=9.9e-22 Score=138.94 Aligned_cols=156 Identities=21% Similarity=0.145 Sum_probs=103.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh--------hhhHhhhc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR--------AVTSAYYR 99 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------~~~~~~~~ 99 (203)
..+|+++|++|+|||||++++.+.+.................. .......+.+|||||..... ......+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI-YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE-EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999887643332222222222222 22234578999999964332 22344678
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHc-CCeEEEEecCCCCCH
Q 048709 100 GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQ-GLFFSEASALNGDNV 178 (203)
Q Consensus 100 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i 178 (203)
.+|++++|+|++++.+.. ...+...+.. .+.|+++++||+|+........+....+.... ..+++++|++++.|+
T Consensus 82 ~~d~i~~v~d~~~~~~~~-~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 82 DVDLVLFVVDASEPIGEG-DEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred hCCEEEEEEECCCccCch-HHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 999999999999862211 1222233332 26789999999999742222233333343434 368999999999999
Q ss_pred HHHHHHHHHH
Q 048709 179 DTAFFRLLQE 188 (203)
Q Consensus 179 ~~~~~~i~~~ 188 (203)
++++++|.+.
T Consensus 158 ~~l~~~l~~~ 167 (168)
T cd04163 158 DELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhh
Confidence 9999998765
No 171
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.89 E-value=1.9e-22 Score=135.38 Aligned_cols=167 Identities=23% Similarity=0.416 Sum_probs=146.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
-.+||.++|.+..|||||+-.+.+.+++.++..+.|..+..+.+.+.+..+.+.+||.+|++++..+.+...+++-+++|
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF 98 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF 98 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence 46999999999999999999999999998888999999999999999999999999999999999999998999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC-----CCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Q 048709 107 VYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA-----VSAEDVVEFAEDQGLFFSEASALNGDNVDTA 181 (203)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 181 (203)
+||.+.++++..+..|+.+....+..-+|+ +|+||.|..-.-. ......+.+++-...+.++||+....|+..+
T Consensus 99 mFDLt~r~TLnSi~~WY~QAr~~NktAiPi-lvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KI 177 (205)
T KOG1673|consen 99 MFDLTRRSTLNSIKEWYRQARGLNKTAIPI-LVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKI 177 (205)
T ss_pred EEecCchHHHHHHHHHHHHHhccCCccceE-EeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHH
Confidence 999999999999999999988877666776 6799999753211 1223456777888999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 048709 182 FFRLLQEIYALSK 194 (203)
Q Consensus 182 ~~~i~~~~~~~~~ 194 (203)
|..++.++.+..-
T Consensus 178 FK~vlAklFnL~~ 190 (205)
T KOG1673|consen 178 FKIVLAKLFNLPW 190 (205)
T ss_pred HHHHHHHHhCCce
Confidence 9999999887543
No 172
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.89 E-value=7.8e-22 Score=141.77 Aligned_cols=150 Identities=19% Similarity=0.211 Sum_probs=99.3
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCc----------hhhhh
Q 048709 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ----------ERYRA 92 (203)
Q Consensus 23 ~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~ 92 (203)
.+....++|+++|.+|+|||||+|+|++........++.+.+.....+..++ .+.+|||||. ..+..
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~ 89 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQK 89 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHH
Confidence 3446779999999999999999999998763333334444433333333332 5899999994 23444
Q ss_pred hhHhhhcC---CcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc--CCCHHHHHHHHHHcC--C
Q 048709 93 VTSAYYRG---ALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW--AVSAEDVVEFAEDQG--L 165 (203)
Q Consensus 93 ~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~--~ 165 (203)
+...|++. ++++++|+|++++-+.... .++..+.. .+.|+++++||+|+.... ....+++++.+...+ .
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDP 165 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCC
Confidence 44455553 5799999999875443333 22233322 478999999999986431 122344555555543 4
Q ss_pred eEEEEecCCCCCHH
Q 048709 166 FFSEASALNGDNVD 179 (203)
Q Consensus 166 ~~~~~sa~~~~~i~ 179 (203)
+++++||++|.|++
T Consensus 166 ~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 166 SVQLFSSLKKTGID 179 (179)
T ss_pred ceEEEECCCCCCCC
Confidence 79999999999873
No 173
>PRK00089 era GTPase Era; Reviewed
Probab=99.89 E-value=1.1e-21 Score=151.25 Aligned_cols=159 Identities=21% Similarity=0.170 Sum_probs=105.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh--------hhhHhhhc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR--------AVTSAYYR 99 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------~~~~~~~~ 99 (203)
--.|+|+|.+|||||||+|+|++.+.........++......+... ...++.+|||||..... ......+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 3569999999999999999999988764443332232222222222 23678999999954322 22334678
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcC-CeEEEEecCCCCCH
Q 048709 100 GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQG-LFFSEASALNGDNV 178 (203)
Q Consensus 100 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i 178 (203)
.+|++++|+|+++..+. .....+..+. ..+.|+++|+||+|+..........+..+....+ .+++++||+++.|+
T Consensus 84 ~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv 159 (292)
T PRK00089 84 DVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNV 159 (292)
T ss_pred cCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCH
Confidence 99999999999883211 1112222222 2468999999999997422222333444444333 67999999999999
Q ss_pred HHHHHHHHHHHHH
Q 048709 179 DTAFFRLLQEIYA 191 (203)
Q Consensus 179 ~~~~~~i~~~~~~ 191 (203)
+++++++.+.+..
T Consensus 160 ~~L~~~L~~~l~~ 172 (292)
T PRK00089 160 DELLDVIAKYLPE 172 (292)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999988754
No 174
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.89 E-value=1.6e-21 Score=161.53 Aligned_cols=151 Identities=20% Similarity=0.254 Sum_probs=112.9
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
.+..+|+++|++++|||||+++|.+..+.....+..+.+.....+.+++. ..+.||||||++.|..++...+..+|+++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 45689999999999999999999988776655444444444444555332 26899999999999998888899999999
Q ss_pred EEEeCCCH---HHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcC---------CeEEEEecC
Q 048709 106 VVYDITKR---QSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQG---------LFFSEASAL 173 (203)
Q Consensus 106 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~sa~ 173 (203)
+|+|+++. ++.+.+ .... ..++|+++++||+|+.+. ..+++.+.+...+ .+++++||+
T Consensus 164 LVVda~dgv~~qT~e~i----~~~~---~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAk 233 (587)
T TIGR00487 164 LVVAADDGVMPQTIEAI----SHAK---AANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSAL 233 (587)
T ss_pred EEEECCCCCCHhHHHHH----HHHH---HcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECC
Confidence 99999873 333222 2222 247899999999998642 3444544443332 479999999
Q ss_pred CCCCHHHHHHHHHH
Q 048709 174 NGDNVDTAFFRLLQ 187 (203)
Q Consensus 174 ~~~~i~~~~~~i~~ 187 (203)
+|.|++++++++..
T Consensus 234 tGeGI~eLl~~I~~ 247 (587)
T TIGR00487 234 TGDGIDELLDMILL 247 (587)
T ss_pred CCCChHHHHHhhhh
Confidence 99999999999874
No 175
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.88 E-value=5.1e-21 Score=136.28 Aligned_cols=155 Identities=21% Similarity=0.188 Sum_probs=103.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCcc-CCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhh----------hhh-hH
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCF-DSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY----------RAV-TS 95 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----------~~~-~~ 95 (203)
+++|+++|.+|+|||||+++|++..... ...+..+.......+..++. .+.+|||||.... ... ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence 5899999999999999999999876432 22233333333344445543 4689999995332 111 12
Q ss_pred hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHH-HHc----CCeEEEE
Q 048709 96 AYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFA-EDQ----GLFFSEA 170 (203)
Q Consensus 96 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~~----~~~~~~~ 170 (203)
.++..+|++++|+|++++.+.... .++..+.. .+.|+++++||+|+........+...+.. ... ..+++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 356789999999999987665443 22222222 46899999999998764212223322322 222 3689999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q 048709 171 SALNGDNVDTAFFRLLQE 188 (203)
Q Consensus 171 sa~~~~~i~~~~~~i~~~ 188 (203)
||+++.|++++++++.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999988764
No 176
>COG1159 Era GTPase [General function prediction only]
Probab=99.88 E-value=1.2e-21 Score=145.88 Aligned_cols=158 Identities=22% Similarity=0.190 Sum_probs=113.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhh--------hhHhhhc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRA--------VTSAYYR 99 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~ 99 (203)
---|+++|.|++|||||+|+|++.+.+..++...++......+...+ ..++.|+||||.....+ .....+.
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 45799999999999999999999999988776766766666665554 56899999999544332 2234578
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHH-c-CCeEEEEecCCCCC
Q 048709 100 GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAED-Q-GLFFSEASALNGDN 177 (203)
Q Consensus 100 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~-~~~~~~~sa~~~~~ 177 (203)
.+|+++||+|+++...-.+ ...++.+.. .+.|+++++||+|........ ....+++.. . ...++++||++|.|
T Consensus 85 dvDlilfvvd~~~~~~~~d-~~il~~lk~---~~~pvil~iNKID~~~~~~~l-~~~~~~~~~~~~f~~ivpiSA~~g~n 159 (298)
T COG1159 85 DVDLILFVVDADEGWGPGD-EFILEQLKK---TKTPVILVVNKIDKVKPKTVL-LKLIAFLKKLLPFKEIVPISALKGDN 159 (298)
T ss_pred cCcEEEEEEeccccCCccH-HHHHHHHhh---cCCCeEEEEEccccCCcHHHH-HHHHHHHHhhCCcceEEEeeccccCC
Confidence 9999999999998432211 122233332 467999999999987643311 233333322 2 24699999999999
Q ss_pred HHHHHHHHHHHHHH
Q 048709 178 VDTAFFRLLQEIYA 191 (203)
Q Consensus 178 i~~~~~~i~~~~~~ 191 (203)
++.+.+.+...+.+
T Consensus 160 ~~~L~~~i~~~Lpe 173 (298)
T COG1159 160 VDTLLEIIKEYLPE 173 (298)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999888887755
No 177
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.88 E-value=4.2e-21 Score=140.42 Aligned_cols=117 Identities=21% Similarity=0.299 Sum_probs=88.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCC-cEEEEEE
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGA-LGAVVVY 108 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~-d~~i~v~ 108 (203)
+|+++|++|||||||+++|....+.....++ ............+....+.+||+||+..+...+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999998775554322 2222222222223456789999999999988888899998 9999999
Q ss_pred eCCCH-HHHHHHHHHHHHHHhh---cCCCCcEEEEEeCCCCCc
Q 048709 109 DITKR-QSFDHVARGVEELRAH---ADSSIRIILIGNKSDLVD 147 (203)
Q Consensus 109 d~~~~-~s~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~ 147 (203)
|+.+. .++..+..++..+... ...++|+++++||+|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 99987 6777776666554332 225899999999999865
No 178
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.88 E-value=1.1e-21 Score=143.56 Aligned_cols=161 Identities=17% Similarity=0.163 Sum_probs=101.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCcc---CCCCCcceeeE--EEEE-----------------------EEC--C----
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCF---DSKSTIGVEFQ--TRTV-----------------------TIN--S---- 74 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~---~~~~~~~~~~~--~~~~-----------------------~~~--~---- 74 (203)
++|+++|+.|+|||||+.+|.+...+. ......+.... ...+ .+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 579999999999999999997642111 11111111111 0000 000 0
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC--CC
Q 048709 75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA--VS 152 (203)
Q Consensus 75 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~ 152 (203)
...++.||||||++.+.......+..+|++++|+|++++.........+..+... ...|+++++||+|+.+... ..
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence 1257899999999888777777788899999999998731111111222222222 2347899999999975211 11
Q ss_pred HHHHHHHHHHc---CCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 048709 153 AEDVVEFAEDQ---GLFFSEASALNGDNVDTAFFRLLQEIYA 191 (203)
Q Consensus 153 ~~~~~~~~~~~---~~~~~~~sa~~~~~i~~~~~~i~~~~~~ 191 (203)
.+++.+++... +++++++||++|.|++++++++.+.+..
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 23344444432 5789999999999999999999876643
No 179
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.88 E-value=3.4e-21 Score=163.96 Aligned_cols=181 Identities=18% Similarity=0.174 Sum_probs=122.2
Q ss_pred CCCCCCccccccccccCCCCC--------CCeeeEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECC
Q 048709 4 EMSGDGTDHRHQQQDKMIPDK--------IDYVFKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINS 74 (203)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ 74 (203)
+.|+.|++++...+....+.. .+..++|+++|.+|+|||||+|+|++.+.. ....+.++.+.....+.+++
T Consensus 418 A~~g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~ 497 (712)
T PRK09518 418 AMHGRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDG 497 (712)
T ss_pred CCCCCCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECC
Confidence 456667766665444433221 123589999999999999999999998753 23334445555555566666
Q ss_pred EEEEEEEEeCCCch----------hhhhhh-HhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 048709 75 KIIKAQIWDTAGQE----------RYRAVT-SAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKS 143 (203)
Q Consensus 75 ~~~~~~l~D~~g~~----------~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 143 (203)
.. +.+|||||.. .+..+. ..+++.+|++++|+|+++..+..... ++..+.. .++|+++|+||+
T Consensus 498 ~~--~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~ 571 (712)
T PRK09518 498 ED--WLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKW 571 (712)
T ss_pred CE--EEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEch
Confidence 54 5799999942 222221 23578999999999999887766653 3333333 478999999999
Q ss_pred CCCcccCCCHHHHHHHHH-H----cCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709 144 DLVDMWAVSAEDVVEFAE-D----QGLFFSEASALNGDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 144 D~~~~~~~~~~~~~~~~~-~----~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~ 192 (203)
|+.+.. ..+...+... . ...+++.+||++|.|++++++.+.+.+...
T Consensus 572 DL~~~~--~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~ 623 (712)
T PRK09518 572 DLMDEF--RRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESW 623 (712)
T ss_pred hcCChh--HHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 997521 1222222222 1 135689999999999999999998887654
No 180
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.7e-22 Score=137.11 Aligned_cols=161 Identities=24% Similarity=0.364 Sum_probs=125.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC---CccC--CCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNE---FCFD--SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGAL 102 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 102 (203)
.+.|+++|..++|||||+.++...- +... ..-++++....-++.+. ...+.+||.+|++..+++|..||..++
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~--~~~l~fwdlgGQe~lrSlw~~yY~~~H 94 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC--NAPLSFWDLGGQESLRSLWKKYYWLAH 94 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec--cceeEEEEcCChHHHHHHHHHHHHHhc
Confidence 4889999999999999999875421 1111 11122233333344444 456899999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHH------HcCCeEEEEecCCC
Q 048709 103 GAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAE------DQGLFFSEASALNG 175 (203)
Q Consensus 103 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~sa~~~ 175 (203)
++|+++|+++++.++.....++.+..... .++|+++.+||.|+.+ .+...++..... +...++.++||.+|
T Consensus 95 ~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~--~~~~~El~~~~~~~e~~~~rd~~~~pvSal~g 172 (197)
T KOG0076|consen 95 GIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQN--AMEAAELDGVFGLAELIPRRDNPFQPVSALTG 172 (197)
T ss_pred eeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhh--hhhHHHHHHHhhhhhhcCCccCccccchhhhc
Confidence 99999999999999998877777766555 8999999999999987 445555554443 23468999999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q 048709 176 DNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 176 ~~i~~~~~~i~~~~~~~ 192 (203)
.||++..+|++..+...
T Consensus 173 egv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 173 EGVKEGIEWLVKKLEKN 189 (197)
T ss_pred ccHHHHHHHHHHHHhhc
Confidence 99999999999988775
No 181
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=2.4e-21 Score=157.21 Aligned_cols=158 Identities=21% Similarity=0.157 Sum_probs=106.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhh----------hhh-h
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY----------RAV-T 94 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----------~~~-~ 94 (203)
..++|+++|.+|+|||||+|+|++.+.. ....+..+.+.....+..++ ..+.+|||||.... ... .
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 4699999999999999999999987643 22233333333333344444 45789999995321 111 1
Q ss_pred HhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----HcCCeEEE
Q 048709 95 SAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAE-----DQGLFFSE 169 (203)
Q Consensus 95 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~ 169 (203)
..++..+|++++|+|++++.+.... .++..+.. .+.|+++++||+|+.+.. ..+++.+... ...+++++
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~---~~~~~ivv~NK~Dl~~~~--~~~~~~~~~~~~l~~~~~~~i~~ 323 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDL-RIAGLALE---AGRALVIVVNKWDLVDEK--TMEEFKKELRRRLPFLDYAPIVF 323 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCcEEEEEECccCCCHH--HHHHHHHHHHHhcccccCCCEEE
Confidence 2367899999999999987665544 23333332 468999999999987421 1222222221 13478999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHh
Q 048709 170 ASALNGDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 170 ~sa~~~~~i~~~~~~i~~~~~~~ 192 (203)
+||++|.|+.++++.+.+.....
T Consensus 324 ~SA~~~~gv~~l~~~i~~~~~~~ 346 (435)
T PRK00093 324 ISALTGQGVDKLLEAIDEAYENA 346 (435)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988766543
No 182
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.88 E-value=4.2e-21 Score=159.50 Aligned_cols=156 Identities=18% Similarity=0.191 Sum_probs=117.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC---CccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNE---FCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
+.|+++|.+++|||||+++|++.. +..+..+..+.+.....+..++ ..+.+||+||++.|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 479999999999999999999743 3334445556665555566655 67899999999999888888899999999
Q ss_pred EEEeCCC---HHHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCcccCC--CHHHHHHHHHHc----CCeEEEEecCCC
Q 048709 106 VVYDITK---RQSFDHVARGVEELRAHADSSIR-IILIGNKSDLVDMWAV--SAEDVVEFAEDQ----GLFFSEASALNG 175 (203)
Q Consensus 106 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~sa~~~ 175 (203)
+|+|+++ +++.+.+. .+.. .++| +++++||+|+.+.... ..+++.+++... +++++++||++|
T Consensus 79 LVVDa~~G~~~qT~ehl~----il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA----VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHHHH----HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 9999998 45544432 2222 3567 9999999999764321 234555665554 578999999999
Q ss_pred CCHHHHHHHHHHHHHHhh
Q 048709 176 DNVDTAFFRLLQEIYALS 193 (203)
Q Consensus 176 ~~i~~~~~~i~~~~~~~~ 193 (203)
.|++++++.+.+.+....
T Consensus 152 ~GI~eL~~~L~~l~~~~~ 169 (581)
T TIGR00475 152 QGIGELKKELKNLLESLD 169 (581)
T ss_pred CCchhHHHHHHHHHHhCC
Confidence 999999998887766543
No 183
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.87 E-value=1.8e-21 Score=152.54 Aligned_cols=184 Identities=21% Similarity=0.167 Sum_probs=128.5
Q ss_pred CCCCCCCccccccccccCCC-CC---C---CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCC-CCCcceeeEEEEEEECC
Q 048709 3 KEMSGDGTDHRHQQQDKMIP-DK---I---DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDS-KSTIGVEFQTRTVTINS 74 (203)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~-~~---~---~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~ 74 (203)
+++|+.|+++++......+| .. . ..+++|+++|.|++|||||+|+|++.+..... .+.++.+.-...+..++
T Consensus 146 SA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~ 225 (444)
T COG1160 146 SAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG 225 (444)
T ss_pred ehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC
Confidence 46799999998888777752 11 1 14699999999999999999999998876554 23333444444444445
Q ss_pred EEEEEEEEeCCCchhhhhh-----------hHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 048709 75 KIIKAQIWDTAGQERYRAV-----------TSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKS 143 (203)
Q Consensus 75 ~~~~~~l~D~~g~~~~~~~-----------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 143 (203)
..+.++||+|...-... ....+..+|++++|+|++.+-+-++.+ ....+.+ .+.++++++|||
T Consensus 226 --~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~---~g~~~vIvvNKW 299 (444)
T COG1160 226 --RKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLR-IAGLIEE---AGRGIVIVVNKW 299 (444)
T ss_pred --eEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHH-HHHHHHH---cCCCeEEEEEcc
Confidence 45789999994322111 123478899999999999976655442 2222222 578899999999
Q ss_pred CCCcccCCCHHHHHHHHHH-----cCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709 144 DLVDMWAVSAEDVVEFAED-----QGLFFSEASALNGDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 144 D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~ 192 (203)
|+.+..+...++.++.... ...+++.+||++|.++.++|+.+.+.....
T Consensus 300 Dl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~ 353 (444)
T COG1160 300 DLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECA 353 (444)
T ss_pred ccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHh
Confidence 9977544555555444433 235899999999999999998887766554
No 184
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.87 E-value=6.9e-21 Score=160.06 Aligned_cols=154 Identities=18% Similarity=0.208 Sum_probs=112.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCccee--eEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVE--FQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 103 (203)
.+...|+|+|.+++|||||+++|.+..+.....+..+.+ .+...+..++....+.||||||+..|..++..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 456899999999999999999999877654433333322 222333344455789999999999999999999999999
Q ss_pred EEEEEeCCCH---HHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHH-------HcC--CeEEEEe
Q 048709 104 AVVVYDITKR---QSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAE-------DQG--LFFSEAS 171 (203)
Q Consensus 104 ~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-------~~~--~~~~~~s 171 (203)
+++|+|+++. ++++.+ ..+ ...++|+++++||+|+.+. ..+++.+.+. .++ ++++++|
T Consensus 322 aILVVDA~dGv~~QT~E~I----~~~---k~~~iPiIVViNKiDl~~~---~~e~v~~eL~~~~ll~e~~g~~vpvv~VS 391 (742)
T CHL00189 322 AILIIAADDGVKPQTIEAI----NYI---QAANVPIIVAINKIDKANA---NTERIKQQLAKYNLIPEKWGGDTPMIPIS 391 (742)
T ss_pred EEEEEECcCCCChhhHHHH----HHH---HhcCceEEEEEECCCcccc---CHHHHHHHHHHhccchHhhCCCceEEEEE
Confidence 9999999874 333332 222 2257899999999999752 2333333222 223 6899999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 048709 172 ALNGDNVDTAFFRLLQEI 189 (203)
Q Consensus 172 a~~~~~i~~~~~~i~~~~ 189 (203)
|++|.|++++++++....
T Consensus 392 AktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 392 ASQGTNIDKLLETILLLA 409 (742)
T ss_pred CCCCCCHHHHHHhhhhhh
Confidence 999999999999988754
No 185
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.87 E-value=7e-21 Score=158.35 Aligned_cols=146 Identities=19% Similarity=0.180 Sum_probs=110.0
Q ss_pred cCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhh------hHhhh--cCCcEEEE
Q 048709 35 GDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV------TSAYY--RGALGAVV 106 (203)
Q Consensus 35 G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~------~~~~~--~~~d~~i~ 106 (203)
|.+|+|||||+|+|++......+.+..+.+.....+.+++. ++++|||||..++... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 89999999999999998776666666666666666666654 5789999998766542 33443 37899999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709 107 VYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (203)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 186 (203)
|+|+++.+.. ..+...+. ..++|+++++||+|+.+..... .+..++.+..+++++++||++|.|++++++++.
T Consensus 79 VvDat~ler~---l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchhh---HHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 9999875432 12222222 2478999999999997644443 356777888899999999999999999999998
Q ss_pred HHH
Q 048709 187 QEI 189 (203)
Q Consensus 187 ~~~ 189 (203)
+..
T Consensus 152 ~~~ 154 (591)
T TIGR00437 152 KAI 154 (591)
T ss_pred HHh
Confidence 753
No 186
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=1.8e-20 Score=152.12 Aligned_cols=147 Identities=23% Similarity=0.193 Sum_probs=104.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh--------hhhhhHhhhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER--------YRAVTSAYYR 99 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~ 99 (203)
.+|+++|.+|+|||||+|+|.+.... ....+..+.+.......+++ ..+.+|||||... +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999987753 22224444455555556655 6789999999765 2223445788
Q ss_pred CCcEEEEEEeCCCHHHHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC-eEEEEecCCCC
Q 048709 100 GALGAVVVYDITKRQSFD--HVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL-FFSEASALNGD 176 (203)
Q Consensus 100 ~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~ 176 (203)
.+|++++|+|++++.+.. .+..|+. . .+.|+++|+||+|..+. .+...++ ...++ .++++||++|.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~---~---~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILR---K---SNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence 999999999998753332 2233332 2 37899999999997541 2233333 34455 48999999999
Q ss_pred CHHHHHHHHHHH
Q 048709 177 NVDTAFFRLLQE 188 (203)
Q Consensus 177 ~i~~~~~~i~~~ 188 (203)
|+.++++.+.+.
T Consensus 149 gv~~l~~~I~~~ 160 (435)
T PRK00093 149 GIGDLLDAILEE 160 (435)
T ss_pred CHHHHHHHHHhh
Confidence 999999999873
No 187
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.86 E-value=2.7e-21 Score=140.05 Aligned_cols=159 Identities=22% Similarity=0.253 Sum_probs=106.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccC------------------CCCCcceeeEEEEEEECCEEEEEEEEeCCCchh
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFD------------------SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 89 (203)
.++|+++|+.++|||||+++|....-... .....+..........+.....+.++||||+..
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 58999999999999999999975431110 111222333333333123446789999999998
Q ss_pred hhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC-CCHHHHH-HHHHHc----
Q 048709 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA-VSAEDVV-EFAEDQ---- 163 (203)
Q Consensus 90 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~-~~~~~~---- 163 (203)
|.......+..+|++|+|+|+.+.-... ....+..+.. .++|+++++||+|+...+. ...+++. .+.+..
T Consensus 83 f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~ 158 (188)
T PF00009_consen 83 FIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENG 158 (188)
T ss_dssp HHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred eeecccceecccccceeeeecccccccc-cccccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccccCc
Confidence 8887778899999999999998753322 2233333333 4788999999999973210 1112222 232222
Q ss_pred --CCeEEEEecCCCCCHHHHHHHHHHHHH
Q 048709 164 --GLFFSEASALNGDNVDTAFFRLLQEIY 190 (203)
Q Consensus 164 --~~~~~~~sa~~~~~i~~~~~~i~~~~~ 190 (203)
.++++++||++|.|++++++.+.+.++
T Consensus 159 ~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 159 EEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 358999999999999999999988764
No 188
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.86 E-value=1.4e-20 Score=159.49 Aligned_cols=152 Identities=21% Similarity=0.256 Sum_probs=111.8
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 104 (203)
..+...|+|+|..++|||||+++|.+..+........+.+.....+.+++ ..++||||||+..|..++...+..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 45678999999999999999999998776554434433444444444544 5689999999999999998889999999
Q ss_pred EEEEeCCCH---HHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHH-------HHHcC--CeEEEEec
Q 048709 105 VVVYDITKR---QSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEF-------AEDQG--LFFSEASA 172 (203)
Q Consensus 105 i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-------~~~~~--~~~~~~sa 172 (203)
++|+|+++. ++.+.+ ..+ ...++|+++++||+|+.+. ..+.+... +..++ ++++++||
T Consensus 365 ILVVdAddGv~~qT~e~i----~~a---~~~~vPiIVviNKiDl~~a---~~e~V~~eL~~~~~~~e~~g~~vp~vpvSA 434 (787)
T PRK05306 365 VLVVAADDGVMPQTIEAI----NHA---KAAGVPIIVAINKIDKPGA---NPDRVKQELSEYGLVPEEWGGDTIFVPVSA 434 (787)
T ss_pred EEEEECCCCCCHhHHHHH----HHH---HhcCCcEEEEEECcccccc---CHHHHHHHHHHhcccHHHhCCCceEEEEeC
Confidence 999999873 333322 222 2257899999999999652 22333222 12233 68999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 048709 173 LNGDNVDTAFFRLLQE 188 (203)
Q Consensus 173 ~~~~~i~~~~~~i~~~ 188 (203)
++|.|+++++++|...
T Consensus 435 ktG~GI~eLle~I~~~ 450 (787)
T PRK05306 435 KTGEGIDELLEAILLQ 450 (787)
T ss_pred CCCCCchHHHHhhhhh
Confidence 9999999999998754
No 189
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.86 E-value=5.9e-21 Score=133.78 Aligned_cols=151 Identities=19% Similarity=0.184 Sum_probs=103.5
Q ss_pred EEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhh-------hhHhhhcCCcEE
Q 048709 33 VIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRA-------VTSAYYRGALGA 104 (203)
Q Consensus 33 vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~~~~d~~ 104 (203)
++|++|||||||+++|++.... .......+............ ...+.+||+||...+.. ....++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999987655 33333333333333333321 45789999999655432 334578999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHH---HHHHHHHHcCCeEEEEecCCCCCHHHH
Q 048709 105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAE---DVVEFAEDQGLFFSEASALNGDNVDTA 181 (203)
Q Consensus 105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~sa~~~~~i~~~ 181 (203)
++|+|+.+........ +..... ..+.|+++++||+|+......... ...........+++++|++++.|+.++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999876655543 222222 257899999999998763222111 112233445678999999999999999
Q ss_pred HHHHHHH
Q 048709 182 FFRLLQE 188 (203)
Q Consensus 182 ~~~i~~~ 188 (203)
++++.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9998865
No 190
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.86 E-value=4.9e-20 Score=127.74 Aligned_cols=156 Identities=24% Similarity=0.387 Sum_probs=119.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCc--------cCCCC--CcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHh
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFC--------FDSKS--TIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSA 96 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~--------~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~ 96 (203)
...||+|.|+.++||||+++++...... ..... ..++....-.+.+++ ...+.|+||||+++|+.+|..
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-~~~v~LfgtPGq~RF~fm~~~ 87 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-DTGVHLFGTPGQERFKFMWEI 87 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-cceEEEecCCCcHHHHHHHHH
Confidence 4689999999999999999999887631 11111 122222222222222 246899999999999999999
Q ss_pred hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHc--CCeEEEEecCC
Q 048709 97 YYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQ--GLFFSEASALN 174 (203)
Q Consensus 97 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~sa~~ 174 (203)
++++++++|+++|.+.+..+ .....++.+.... .+|+++.+||.|+.+ ..+.+.+++..... .++++..+|.+
T Consensus 88 l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~--a~ppe~i~e~l~~~~~~~~vi~~~a~e 162 (187)
T COG2229 88 LSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFD--ALPPEKIREALKLELLSVPVIEIDATE 162 (187)
T ss_pred HhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCC--CCCHHHHHHHHHhccCCCceeeeeccc
Confidence 99999999999999998887 4444444444432 299999999999998 66888898888776 89999999999
Q ss_pred CCCHHHHHHHHHHH
Q 048709 175 GDNVDTAFFRLLQE 188 (203)
Q Consensus 175 ~~~i~~~~~~i~~~ 188 (203)
+.+..+.++.+...
T Consensus 163 ~~~~~~~L~~ll~~ 176 (187)
T COG2229 163 GEGARDQLDVLLLK 176 (187)
T ss_pred chhHHHHHHHHHhh
Confidence 99999998888765
No 191
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.85 E-value=1.7e-20 Score=152.05 Aligned_cols=151 Identities=21% Similarity=0.163 Sum_probs=106.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCcc-CCCCCcceeeEEEEEEECCEEEEEEEEeCCCc--------hhhhhhhHhhhcC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCF-DSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ--------ERYRAVTSAYYRG 100 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~--------~~~~~~~~~~~~~ 100 (203)
+|+++|.+|+|||||+|+|++..... ...+..+.+........++ ..+.+|||||. ..+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 58999999999999999999877432 2223444444445555555 45899999995 3344445667899
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC-eEEEEecCCCCCHH
Q 048709 101 ALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL-FFSEASALNGDNVD 179 (203)
Q Consensus 101 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~ 179 (203)
+|++++|+|+.+..+.... .+...+.+ .++|+++|+||+|+...... ..+ +...++ +++++||++|.|+.
T Consensus 79 ad~vl~vvD~~~~~~~~d~-~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDE-EIAKWLRK---SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred CCEEEEEEeCCCCCCHHHH-HHHHHHHH---hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChH
Confidence 9999999999874333221 12222222 36899999999998754321 222 234555 79999999999999
Q ss_pred HHHHHHHHHHHH
Q 048709 180 TAFFRLLQEIYA 191 (203)
Q Consensus 180 ~~~~~i~~~~~~ 191 (203)
++++++.+.+..
T Consensus 150 ~ll~~i~~~l~~ 161 (429)
T TIGR03594 150 DLLDAILELLPE 161 (429)
T ss_pred HHHHHHHHhcCc
Confidence 999999987754
No 192
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.85 E-value=3.6e-20 Score=154.21 Aligned_cols=160 Identities=18% Similarity=0.197 Sum_probs=112.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCC--Ccc-----CC------CCCcceeeEEEE--EEE---CCEEEEEEEEeCCCch
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNE--FCF-----DS------KSTIGVEFQTRT--VTI---NSKIIKAQIWDTAGQE 88 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~--~~~-----~~------~~~~~~~~~~~~--~~~---~~~~~~~~l~D~~g~~ 88 (203)
+-.+|+++|+.++|||||+.+|+... +.. .. ..+.+.+..... +.+ ++..+.++||||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 34689999999999999999997531 110 00 011122222222 222 4557889999999999
Q ss_pred hhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC---
Q 048709 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL--- 165 (203)
Q Consensus 89 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--- 165 (203)
.|...+..++..+|++++|+|+++.........|.... ..++|+++++||+|+.+.. ......++....++
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~ 159 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAAD--PERVKQEIEDVIGIDAS 159 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCccc--HHHHHHHHHHHhCCCcc
Confidence 99988889999999999999999865444444443322 1478999999999986521 12222334444454
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709 166 FFSEASALNGDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 166 ~~~~~sa~~~~~i~~~~~~i~~~~~~~ 192 (203)
.++++||++|.|+++++++|.+.+...
T Consensus 160 ~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 160 DAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred eEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 389999999999999999999887654
No 193
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.85 E-value=1e-19 Score=135.66 Aligned_cols=151 Identities=23% Similarity=0.208 Sum_probs=104.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh-------hhhHhhhcCCc
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR-------AVTSAYYRGAL 102 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~d 102 (203)
+|+++|.+|+|||||+++|++........+.++.+.....+.+++ ..+++||+||..... .....+++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999998765444334444555555555655 568999999964322 22345789999
Q ss_pred EEEEEEeCCCHH-HHHHHHHHHHHH----------------------------------------H--------------
Q 048709 103 GAVVVYDITKRQ-SFDHVARGVEEL----------------------------------------R-------------- 127 (203)
Q Consensus 103 ~~i~v~d~~~~~-s~~~~~~~~~~~----------------------------------------~-------------- 127 (203)
++++|+|++++. ....+...+... .
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998754 333332222211 0
Q ss_pred -----------hhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 048709 128 -----------AHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189 (203)
Q Consensus 128 -----------~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~ 189 (203)
.-....+|+++|+||+|+.. .++...++.. .+++++||++|.|++++++.+.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 00113478999999999854 3444455443 4589999999999999999988754
No 194
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=5.4e-21 Score=132.57 Aligned_cols=162 Identities=30% Similarity=0.482 Sum_probs=141.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
..++++++|..|.||||+++++..+++...+.+|.+.........-+...+++..|||.|++.+..+...|+-...+.++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 57999999999999999999999999999999999988877766555446899999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709 107 VYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (203)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 186 (203)
+||++..-.+.++.+|...+.+.+ .++|+++++||.|..... .......+.+...+.++++|++.+.|+..-|-|+.
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~La 165 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLA 165 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHHh
Confidence 999999999999999999988877 559999999999986632 22344455667788899999999999999999999
Q ss_pred HHHHH
Q 048709 187 QEIYA 191 (203)
Q Consensus 187 ~~~~~ 191 (203)
+++..
T Consensus 166 rKl~G 170 (216)
T KOG0096|consen 166 RKLTG 170 (216)
T ss_pred hhhcC
Confidence 98765
No 195
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.85 E-value=6.3e-20 Score=156.28 Aligned_cols=155 Identities=21% Similarity=0.114 Sum_probs=104.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCC-CCCcceeeEEEEEEECCEEEEEEEEeCCCchh--------hhhhhHhh
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDS-KSTIGVEFQTRTVTINSKIIKAQIWDTAGQER--------YRAVTSAY 97 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~ 97 (203)
...+|+++|.+|+|||||+|+|++....... .+..+.+........++ ..+.+|||||... +......+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 3578999999999999999999987653322 23333333333333333 4688999999653 23344557
Q ss_pred hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 048709 98 YRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDN 177 (203)
Q Consensus 98 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 177 (203)
+..+|++++|+|+++.-.... ..+...+.. .++|+++|+||+|+... .....++.....-..+++||++|.|
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~----~~~~~~~~~lg~~~~~~iSA~~g~G 423 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQAS----EYDAAEFWKLGLGEPYPISAMHGRG 423 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccc----hhhHHHHHHcCCCCeEEEECCCCCC
Confidence 899999999999986322111 133333332 57899999999998652 1122222222112467899999999
Q ss_pred HHHHHHHHHHHHHH
Q 048709 178 VDTAFFRLLQEIYA 191 (203)
Q Consensus 178 i~~~~~~i~~~~~~ 191 (203)
+.++++++++.+..
T Consensus 424 I~eLl~~i~~~l~~ 437 (712)
T PRK09518 424 VGDLLDEALDSLKV 437 (712)
T ss_pred chHHHHHHHHhccc
Confidence 99999999998755
No 196
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.85 E-value=8.9e-20 Score=155.19 Aligned_cols=153 Identities=13% Similarity=0.126 Sum_probs=112.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhh----------hHhh
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV----------TSAY 97 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----------~~~~ 97 (203)
.++|+++|.+|||||||+|+|++........+. .+...++..+.....++.+|||||..++... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pG--vTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAG--VTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCC--ceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 478999999999999999999987664444343 4444444444445567899999997665321 2233
Q ss_pred h--cCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCC
Q 048709 98 Y--RGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNG 175 (203)
Q Consensus 98 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 175 (203)
+ ..+|++++|+|+++.+... .+...+.+ .++|+++++||+|..+.+.. ..+..++.+..+++++++|+++|
T Consensus 81 l~~~~aD~vI~VvDat~ler~l---~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g 153 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERNL---YLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG 153 (772)
T ss_pred HhccCCCEEEEEecCCcchhhH---HHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence 3 4789999999999855422 23333333 47899999999998754333 34567778889999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 048709 176 DNVDTAFFRLLQEI 189 (203)
Q Consensus 176 ~~i~~~~~~i~~~~ 189 (203)
.|++++.+.+.+..
T Consensus 154 ~GIdeL~~~I~~~~ 167 (772)
T PRK09554 154 RGIEALKLAIDRHQ 167 (772)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999998887754
No 197
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.84 E-value=2.8e-20 Score=123.13 Aligned_cols=161 Identities=22% Similarity=0.381 Sum_probs=124.4
Q ss_pred CCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcC
Q 048709 21 IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRG 100 (203)
Q Consensus 21 ~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 100 (203)
......+.+||+++|..++|||||+.+|.+.+..... ||.+ +.++.+.+++ .+.+++||.+|+...+..|..||.+
T Consensus 10 ~ks~t~rEirilllGldnAGKTT~LKqL~sED~~hlt-pT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyen 85 (185)
T KOG0074|consen 10 CKSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLT-PTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYEN 85 (185)
T ss_pred hcCCCcceEEEEEEecCCCcchhHHHHHccCChhhcc-ccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhc
Confidence 3444577899999999999999999999887654332 4544 4555555554 4689999999999999999999999
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----HcCCeEEEEecCC
Q 048709 101 ALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAE-----DQGLFFSEASALN 174 (203)
Q Consensus 101 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~ 174 (203)
.|++|||+|.++...|+++...+-.+..-.. ..+|+.+..||.|+.- +...+++..-+. ...+.+-+||+.+
T Consensus 86 vd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllt--aa~~eeia~klnl~~lrdRswhIq~csals 163 (185)
T KOG0074|consen 86 VDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLT--AAKVEEIALKLNLAGLRDRSWHIQECSALS 163 (185)
T ss_pred cceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHh--hcchHHHHHhcchhhhhhceEEeeeCcccc
Confidence 9999999999999999988666666555444 7799999999999876 344444433322 2235688899999
Q ss_pred CCCHHHHHHHHHH
Q 048709 175 GDNVDTAFFRLLQ 187 (203)
Q Consensus 175 ~~~i~~~~~~i~~ 187 (203)
+.|+.+-.+|+..
T Consensus 164 ~eg~~dg~~wv~s 176 (185)
T KOG0074|consen 164 LEGSTDGSDWVQS 176 (185)
T ss_pred ccCccCcchhhhc
Confidence 9999988888765
No 198
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.1e-20 Score=125.40 Aligned_cols=158 Identities=23% Similarity=0.385 Sum_probs=123.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
...+|+++|.-|+||||++.++.-++..... |+.+...... ..++.++++||.+|+.+.+..|+.|+.+.|++|+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttk-Ptigfnve~v----~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTK-PTIGFNVETV----PYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccC-CCCCcCcccc----ccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 6799999999999999999999877764443 6655544432 2367889999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHH-----HHcCCeEEEEecCCCCCHHH
Q 048709 107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFA-----EDQGLFFSEASALNGDNVDT 180 (203)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~ 180 (203)
|+|.++.+...-....+..+..... ++..+++++||.|... .....|+...+ +..-+.++++||.+|.|++.
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~--~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~ 169 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSG--ALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDP 169 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchh--hhhHHHHHHHhChHHHhhheeEEEeeccccccCCcH
Confidence 9999998766665555555544444 6678899999999876 34444543332 33346799999999999999
Q ss_pred HHHHHHHHHHH
Q 048709 181 AFFRLLQEIYA 191 (203)
Q Consensus 181 ~~~~i~~~~~~ 191 (203)
.++|+.+.+-.
T Consensus 170 ~~DWL~~~l~~ 180 (182)
T KOG0072|consen 170 AMDWLQRPLKS 180 (182)
T ss_pred HHHHHHHHHhc
Confidence 99999987643
No 199
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.84 E-value=1.2e-19 Score=128.55 Aligned_cols=150 Identities=17% Similarity=0.200 Sum_probs=98.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCch----------hhhhhhHhhhc
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE----------RYRAVTSAYYR 99 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~~~~~ 99 (203)
.|+++|.+|+|||||++.|.+........++.+.+.....+..++ .+.+|||||.. .+......|+.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999996555444445544444444444443 78999999932 23444444554
Q ss_pred ---CCcEEEEEEeCCCHH--HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCC--CHHHHHHHHH--HcCCeEEEE
Q 048709 100 ---GALGAVVVYDITKRQ--SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAV--SAEDVVEFAE--DQGLFFSEA 170 (203)
Q Consensus 100 ---~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~--~~~~~~~~~ 170 (203)
..+++++++|..+.. ....+..|+.. .+.|+++++||+|+...... ........+. ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 457889999987652 22222333322 25789999999998543211 1122222222 344679999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q 048709 171 SALNGDNVDTAFFRLLQE 188 (203)
Q Consensus 171 sa~~~~~i~~~~~~i~~~ 188 (203)
|++++.++++++++|.+.
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999998875
No 200
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.84 E-value=3.3e-19 Score=147.62 Aligned_cols=157 Identities=19% Similarity=0.232 Sum_probs=104.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC----------------CEEEEEEEEeCCCchhhh
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN----------------SKIIKAQIWDTAGQERYR 91 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~D~~g~~~~~ 91 (203)
..-|+++|.+++|||||+++|.+..+........+.+.....+..+ .....+.+|||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 3469999999999999999999886644322211111111111111 001238899999999999
Q ss_pred hhhHhhhcCCcEEEEEEeCCC---HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCC------------CHHHH
Q 048709 92 AVTSAYYRGALGAVVVYDITK---RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAV------------SAEDV 156 (203)
Q Consensus 92 ~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~------------~~~~~ 156 (203)
.++..+++.+|++++|+|+++ +++++.+. .+.. .++|+++++||+|+...+.. ..+.+
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v 156 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV 156 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence 999999999999999999987 45554432 2222 47899999999998642110 00000
Q ss_pred ------------HHHHH--------------HcCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 048709 157 ------------VEFAE--------------DQGLFFSEASALNGDNVDTAFFRLLQEIYA 191 (203)
Q Consensus 157 ------------~~~~~--------------~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~ 191 (203)
.++.. ...++++++||++|.|+++++.++......
T Consensus 157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~ 217 (590)
T TIGR00491 157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQ 217 (590)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHH
Confidence 11111 013689999999999999999988765443
No 201
>COG2262 HflX GTPases [General function prediction only]
Probab=99.83 E-value=4.7e-19 Score=137.13 Aligned_cols=159 Identities=19% Similarity=0.198 Sum_probs=126.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCc---------hhhhhhhHh
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ---------ERYRAVTSA 96 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~---------~~~~~~~~~ 96 (203)
.....|+++|.+|+|||||+|+|++.........+.+.+++++.+.+.+ ...+.+.||.|. +.|.+..+.
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE 268 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEE 268 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHH
Confidence 4568999999999999999999999888777778888999999998875 456789999993 234444433
Q ss_pred hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCC
Q 048709 97 YYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGD 176 (203)
Q Consensus 97 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 176 (203)
...+|+++.|+|++++...+++......+.......+|+++|.||+|+..+.. ....+....-..+.+||++|.
T Consensus 269 -~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~iSA~~~~ 342 (411)
T COG2262 269 -VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSPNPVFISAKTGE 342 (411)
T ss_pred -hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCCCeEEEEeccCc
Confidence 57899999999999998888887777777777667799999999999865322 222222222158899999999
Q ss_pred CHHHHHHHHHHHHHH
Q 048709 177 NVDTAFFRLLQEIYA 191 (203)
Q Consensus 177 ~i~~~~~~i~~~~~~ 191 (203)
|++.+++.|.+.+..
T Consensus 343 gl~~L~~~i~~~l~~ 357 (411)
T COG2262 343 GLDLLRERIIELLSG 357 (411)
T ss_pred CHHHHHHHHHHHhhh
Confidence 999999999998875
No 202
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.83 E-value=1.1e-19 Score=142.59 Aligned_cols=152 Identities=20% Similarity=0.097 Sum_probs=108.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCC-CCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh---------hhhHhhh
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDS-KSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR---------AVTSAYY 98 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~~~ 98 (203)
..|+++|.||+|||||+|+|++.+..... .|.++.+.........+ ..|.++||+|.+... ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 57999999999999999999998877443 35555555555555555 448999999955322 2234467
Q ss_pred cCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 048709 99 RGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNV 178 (203)
Q Consensus 99 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 178 (203)
..+|++|||+|....-+-++- .....+. ..++|+++|+||+|... ..+...+|....--.++.+||..|.|+
T Consensus 82 ~eADvilfvVD~~~Git~~D~-~ia~~Lr---~~~kpviLvvNK~D~~~----~e~~~~efyslG~g~~~~ISA~Hg~Gi 153 (444)
T COG1160 82 EEADVILFVVDGREGITPADE-EIAKILR---RSKKPVILVVNKIDNLK----AEELAYEFYSLGFGEPVPISAEHGRGI 153 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHH-HHHHHHH---hcCCCEEEEEEcccCch----hhhhHHHHHhcCCCCceEeehhhccCH
Confidence 899999999999874332221 1112222 14689999999999763 233444454444457899999999999
Q ss_pred HHHHHHHHHHHH
Q 048709 179 DTAFFRLLQEIY 190 (203)
Q Consensus 179 ~~~~~~i~~~~~ 190 (203)
.++++++++.+.
T Consensus 154 ~dLld~v~~~l~ 165 (444)
T COG1160 154 GDLLDAVLELLP 165 (444)
T ss_pred HHHHHHHHhhcC
Confidence 999999999873
No 203
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.83 E-value=2.8e-19 Score=121.26 Aligned_cols=135 Identities=20% Similarity=0.233 Sum_probs=97.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCc----hhhhhhhHhhhcCCcEEE
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ----ERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----~~~~~~~~~~~~~~d~~i 105 (203)
||+++|+.|||||||+++|.+.+. .+..|.. +.+.+ .++||||. ..+....-....++|.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~-------i~~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQA-------IEYYD-----NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccce-------eEecc-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999998765 2323322 22221 34899993 344444455667999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCe-EEEEecCCCCCHHHHHHH
Q 048709 106 VVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAFFR 184 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~~~~~ 184 (203)
+|.|++++.+.-- ..+... -..|+|-|+||+|+... ....+..+++++..|+. +|++|+.+|+|++++.++
T Consensus 69 ll~dat~~~~~~p-----P~fa~~--f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 69 LLQDATEPRSVFP-----PGFASM--FNKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred EEecCCCCCccCC-----chhhcc--cCCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence 9999998643111 111222 25789999999999832 34667788888888874 899999999999999987
Q ss_pred HH
Q 048709 185 LL 186 (203)
Q Consensus 185 i~ 186 (203)
|-
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 74
No 204
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.82 E-value=2.6e-19 Score=140.79 Aligned_cols=156 Identities=22% Similarity=0.207 Sum_probs=110.2
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCC-CCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhh--------hH
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDS-KSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV--------TS 95 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~ 95 (203)
....++++++|.||+|||||+|+|.+.+..... .+.++.+.-...+.++| +.+.+.||+|...-... ..
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~ 291 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAK 291 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHH
Confidence 345799999999999999999999999887655 23443444444445555 77899999995433222 23
Q ss_pred hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCC
Q 048709 96 AYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNG 175 (203)
Q Consensus 96 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 175 (203)
..+..+|.+++|+|++.+..-.+. ..+. ....+.|+++|.||.|+....... .. ....+.+++.+|+++|
T Consensus 292 ~~i~~ADlvL~v~D~~~~~~~~d~-~~~~----~~~~~~~~i~v~NK~DL~~~~~~~--~~---~~~~~~~~i~iSa~t~ 361 (454)
T COG0486 292 KAIEEADLVLFVLDASQPLDKEDL-ALIE----LLPKKKPIIVVLNKADLVSKIELE--SE---KLANGDAIISISAKTG 361 (454)
T ss_pred HHHHhCCEEEEEEeCCCCCchhhH-HHHH----hcccCCCEEEEEechhcccccccc--hh---hccCCCceEEEEecCc
Confidence 457899999999999985222221 1111 333678999999999998743211 11 2234457999999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q 048709 176 DNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 176 ~~i~~~~~~i~~~~~~~ 192 (203)
.|++.+.+.|.+.+...
T Consensus 362 ~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 362 EGLDALREAIKQLFGKG 378 (454)
T ss_pred cCHHHHHHHHHHHHhhc
Confidence 99999998888877665
No 205
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.82 E-value=2.5e-19 Score=144.82 Aligned_cols=152 Identities=19% Similarity=0.168 Sum_probs=101.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhc--CCCcc-----------------------------CCCCCcceeeEEEEEEECC
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTK--NEFCF-----------------------------DSKSTIGVEFQTRTVTINS 74 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 74 (203)
...++|+++|+.++|||||+.+|+. +.+.. +.....+.+.. ...+..
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~--~~~~~~ 82 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVA--HWKFET 82 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEE--EEEEcc
Confidence 3469999999999999999999975 21110 01122333333 333444
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHH--HHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC--
Q 048709 75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDH--VARGVEELRAHADSSIRIILIGNKSDLVDMWA-- 150 (203)
Q Consensus 75 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-- 150 (203)
..+.+.+|||||++.|.......+..+|++++|+|+++.++... ....+. +.... ...|+++++||+|+.+...
T Consensus 83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~-~~~~iIVviNK~Dl~~~~~~~ 160 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTL-GINQLIVAINKMDSVNYDEEE 160 (426)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHc-CCCeEEEEEEChhccCccHHH
Confidence 45788999999998887666667889999999999998743211 111111 12222 2357999999999964211
Q ss_pred --CCHHHHHHHHHHcC-----CeEEEEecCCCCCHHHH
Q 048709 151 --VSAEDVVEFAEDQG-----LFFSEASALNGDNVDTA 181 (203)
Q Consensus 151 --~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~ 181 (203)
...+++.+++...+ ++++++||++|.|+.+.
T Consensus 161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~ 198 (426)
T TIGR00483 161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKK 198 (426)
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEeecccccccccc
Confidence 12345666666654 57999999999999863
No 206
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.82 E-value=2e-19 Score=132.22 Aligned_cols=146 Identities=25% Similarity=0.247 Sum_probs=92.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccC-------------------------------CCCCcceeeEEEEEEECCEEEE
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFD-------------------------------SKSTIGVEFQTRTVTINSKIIK 78 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 78 (203)
+|+++|.+|+|||||+++|+...-... ..+..+.+... ..+.....+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~--~~~~~~~~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAY--RYFSTPKRK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecce--eEEecCCce
Confidence 689999999999999999975321111 00112222222 223333457
Q ss_pred EEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCC----CHH
Q 048709 79 AQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAV----SAE 154 (203)
Q Consensus 79 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~ 154 (203)
+.+|||||+..|.......+..+|++++|+|++++..-.. ......+... ...++++|+||+|+.+.... ...
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHH
Confidence 8899999998876656667899999999999987532111 1222222221 12357889999998652111 123
Q ss_pred HHHHHHHHcC---CeEEEEecCCCCCHHH
Q 048709 155 DVVEFAEDQG---LFFSEASALNGDNVDT 180 (203)
Q Consensus 155 ~~~~~~~~~~---~~~~~~sa~~~~~i~~ 180 (203)
++.+++...+ .+++++||++|.|+.+
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 4445555555 4589999999999875
No 207
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.82 E-value=2e-18 Score=122.29 Aligned_cols=163 Identities=18% Similarity=0.181 Sum_probs=111.9
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCC----------chhhh
Q 048709 22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG----------QERYR 91 (203)
Q Consensus 22 ~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~ 91 (203)
+-+.+....|+++|.+|+|||||||+|++++-..-...|+|.+.....+.+++. +.++|.|| .+.+.
T Consensus 18 ~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~ 94 (200)
T COG0218 18 QYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWK 94 (200)
T ss_pred hCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHH
Confidence 334457789999999999999999999997743333366676666666666653 67999999 35566
Q ss_pred hhhHhhhcC---CcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCH--HHHHHHH-HHcCC
Q 048709 92 AVTSAYYRG---ALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSA--EDVVEFA-EDQGL 165 (203)
Q Consensus 92 ~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~-~~~~~ 165 (203)
.+...|++. -.++++++|+..+..-.+. ++++-+.. .++|+++++||+|.....+... ..+.+.+ .....
T Consensus 95 ~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~ 170 (200)
T COG0218 95 KLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPD 170 (200)
T ss_pred HHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCc
Confidence 667777754 3678999999886443332 33333333 5899999999999876422221 2222111 12222
Q ss_pred e--EEEEecCCCCCHHHHHHHHHHHHHH
Q 048709 166 F--FSEASALNGDNVDTAFFRLLQEIYA 191 (203)
Q Consensus 166 ~--~~~~sa~~~~~i~~~~~~i~~~~~~ 191 (203)
. ++.+|+.++.|++++...|.+.+..
T Consensus 171 ~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 171 DQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred cceEEEEecccccCHHHHHHHHHHHhhc
Confidence 2 7888999999999999888877643
No 208
>PRK10218 GTP-binding protein; Provisional
Probab=99.82 E-value=1.5e-18 Score=144.12 Aligned_cols=161 Identities=16% Similarity=0.183 Sum_probs=114.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc--CCCccCC------------CCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhh
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTK--NEFCFDS------------KSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV 93 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 93 (203)
-.+|+++|+.++|||||+++|+. +.+.... ..+.+.+.......++...+.+++|||||+..|...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 47899999999999999999986 3332211 123445555555555566688999999999999988
Q ss_pred hHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC-CCHHHHHHHHH-------HcCC
Q 048709 94 TSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA-VSAEDVVEFAE-------DQGL 165 (203)
Q Consensus 94 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~ 165 (203)
+..+++.+|++++|+|+.+..... ...++..+.. .++|.++++||+|..+.+. ...+++.++.. ...+
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~ 160 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF 160 (607)
T ss_pred HHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCC
Confidence 999999999999999998753222 2233333333 4788999999999875321 11234444432 2347
Q ss_pred eEEEEecCCCC----------CHHHHHHHHHHHHHHh
Q 048709 166 FFSEASALNGD----------NVDTAFFRLLQEIYAL 192 (203)
Q Consensus 166 ~~~~~sa~~~~----------~i~~~~~~i~~~~~~~ 192 (203)
|++.+||++|. ++..+++.|++.+...
T Consensus 161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 89999999998 5888999888887654
No 209
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.82 E-value=1.7e-18 Score=125.60 Aligned_cols=147 Identities=20% Similarity=0.149 Sum_probs=96.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCc------cCC--------CCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhh
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFC------FDS--------KSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV 93 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 93 (203)
.++|+++|..++|||||+++|+..... ..+ ....+.+.......+.....++.++||||...|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 489999999999999999999753100 000 011223333333444444567899999998887766
Q ss_pred hHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCcccCC---CHHHHHHHHHHcC-----
Q 048709 94 TSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR-IILIGNKSDLVDMWAV---SAEDVVEFAEDQG----- 164 (203)
Q Consensus 94 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~----- 164 (203)
....+..+|++++|+|+.....-. ....+..+.. .++| +++++||+|+....+. ..+++.+++...+
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~ 157 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN 157 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence 667788999999999998742211 2233333333 3566 7799999998642211 1234555555443
Q ss_pred CeEEEEecCCCCCH
Q 048709 165 LFFSEASALNGDNV 178 (203)
Q Consensus 165 ~~~~~~sa~~~~~i 178 (203)
++++++||++|.|+
T Consensus 158 v~iipiSa~~g~n~ 171 (195)
T cd01884 158 TPIVRGSALKALEG 171 (195)
T ss_pred CeEEEeeCccccCC
Confidence 68999999999885
No 210
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.81 E-value=2e-18 Score=143.39 Aligned_cols=156 Identities=19% Similarity=0.249 Sum_probs=102.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC------CEEE----------EEEEEeCCCchhh
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN------SKII----------KAQIWDTAGQERY 90 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~----------~~~l~D~~g~~~~ 90 (203)
++..|+++|++++|||||+++|.+...........+.+......+.+ +... .+.+|||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 44679999999999999999998765433222111111101111110 1111 2689999999999
Q ss_pred hhhhHhhhcCCcEEEEEEeCCC---HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCC------------HH-
Q 048709 91 RAVTSAYYRGALGAVVVYDITK---RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVS------------AE- 154 (203)
Q Consensus 91 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~------------~~- 154 (203)
..++...+..+|++++|+|+++ +++++.+.. +.. .++|+++++||+|+...+... ..
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~ 157 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR 157 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence 9888888899999999999997 556554432 222 478999999999985321100 00
Q ss_pred ----------HHHHHHHHc---------------CCeEEEEecCCCCCHHHHHHHHHHHH
Q 048709 155 ----------DVVEFAEDQ---------------GLFFSEASALNGDNVDTAFFRLLQEI 189 (203)
Q Consensus 155 ----------~~~~~~~~~---------------~~~~~~~sa~~~~~i~~~~~~i~~~~ 189 (203)
++..++... .++++++||++|.|++++++.+...+
T Consensus 158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 111122211 35799999999999999998886544
No 211
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.81 E-value=5.7e-19 Score=141.63 Aligned_cols=162 Identities=18% Similarity=0.151 Sum_probs=105.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCcc---CCCCCcceeeE--E----------------EEEEECC------EEEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCF---DSKSTIGVEFQ--T----------------RTVTINS------KIIKA 79 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~---~~~~~~~~~~~--~----------------~~~~~~~------~~~~~ 79 (203)
..++|+++|.+++|||||+++|.+...+. +.....+.... . ....+++ ....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 46899999999999999999997642211 10011111100 0 0000111 13578
Q ss_pred EEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC--CCHHHHH
Q 048709 80 QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA--VSAEDVV 157 (203)
Q Consensus 80 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~ 157 (203)
.+|||||++.|...+......+|++++|+|++++....+..+.+..+... ...|+++++||+|+.+... ...+++.
T Consensus 83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~i~ 160 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII--GIKNIVIVQNKIDLVSKEKALENYEEIK 160 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc--CCCeEEEEEEccccCCHHHHHHHHHHHH
Confidence 99999999999887777788899999999999642111222222222222 1246899999999975321 1134445
Q ss_pred HHHHHc---CCeEEEEecCCCCCHHHHHHHHHHHHH
Q 048709 158 EFAEDQ---GLFFSEASALNGDNVDTAFFRLLQEIY 190 (203)
Q Consensus 158 ~~~~~~---~~~~~~~sa~~~~~i~~~~~~i~~~~~ 190 (203)
+++... +++++++||++|.|+++++++|...+.
T Consensus 161 ~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 161 EFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred hhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 554433 578999999999999999999988664
No 212
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.81 E-value=3.1e-19 Score=144.25 Aligned_cols=154 Identities=22% Similarity=0.198 Sum_probs=98.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCC-----------------------------CCCcceeeEEEEEEECCEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDS-----------------------------KSTIGVEFQTRTVTINSKII 77 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 77 (203)
..++|+++|++++|||||+++|+...-.... ....+.+.......++...+
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 4599999999999999999999843211000 01122333333334444557
Q ss_pred EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHH-HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC----CC
Q 048709 78 KAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSF-DHVARGVEELRAHADSSIRIILIGNKSDLVDMWA----VS 152 (203)
Q Consensus 78 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~ 152 (203)
.+.+|||||++.|.......+..+|++++|+|+++.... ......+..+... ...|+++++||+|+.+... ..
T Consensus 85 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~~ 162 (425)
T PRK12317 85 YFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYEEV 162 (425)
T ss_pred EEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHHHH
Confidence 899999999888766555557899999999999872111 1111222222221 1246899999999975211 12
Q ss_pred HHHHHHHHHHcC-----CeEEEEecCCCCCHHHHH
Q 048709 153 AEDVVEFAEDQG-----LFFSEASALNGDNVDTAF 182 (203)
Q Consensus 153 ~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~~ 182 (203)
.+++.+++...+ ++++++||++|.|+.+..
T Consensus 163 ~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 163 KEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 245555655554 579999999999998743
No 213
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.81 E-value=8.7e-19 Score=140.55 Aligned_cols=161 Identities=20% Similarity=0.209 Sum_probs=102.5
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCc---cCCCCCcceeeEEE--EE--------------E--EC--C----EEE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFC---FDSKSTIGVEFQTR--TV--------------T--IN--S----KII 77 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~---~~~~~~~~~~~~~~--~~--------------~--~~--~----~~~ 77 (203)
....++|+++|+.++|||||+.+|.+.-.+ .+..+..+...... .+ . .+ + ...
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 345699999999999999999999663211 11111111111100 00 0 01 0 135
Q ss_pred EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCH----HHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCC--
Q 048709 78 KAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKR----QSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAV-- 151 (203)
Q Consensus 78 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-- 151 (203)
.+.+|||||+..|..........+|++++|+|++++ ++.+.+ ..+... ...|+++++||+|+.+....
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l----~~l~~~--~i~~iiVVlNK~Dl~~~~~~~~ 159 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL----MALDII--GIKNIVIVQNKIDLVSKERALE 159 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH----HHHHHc--CCCcEEEEEEeeccccchhHHH
Confidence 789999999888766554555677999999999964 233222 222221 12368999999999763221
Q ss_pred CHHHHHHHHHHc---CCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 048709 152 SAEDVVEFAEDQ---GLFFSEASALNGDNVDTAFFRLLQEIYA 191 (203)
Q Consensus 152 ~~~~~~~~~~~~---~~~~~~~sa~~~~~i~~~~~~i~~~~~~ 191 (203)
..+++..++... +++++++||++|.|++++++.|.+.+..
T Consensus 160 ~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 160 NYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 123445554432 5789999999999999999999887643
No 214
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.81 E-value=8.1e-19 Score=145.81 Aligned_cols=160 Identities=16% Similarity=0.199 Sum_probs=112.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc--CCCccCC------------CCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhh
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK--NEFCFDS------------KSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVT 94 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 94 (203)
.+|+++|+.++|||||+++|+. +.+.... ....+.+.......+.....++++|||||+..|....
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 4799999999999999999985 2221110 0112233333333344445788999999999999888
Q ss_pred HhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC-CCHHHHHHHHH-------HcCCe
Q 048709 95 SAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA-VSAEDVVEFAE-------DQGLF 166 (203)
Q Consensus 95 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~ 166 (203)
..+++.+|++++|+|+.+.. ..+...++..+.. .++|+++++||+|+.+.+. ...+++..++. ...++
T Consensus 82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence 89999999999999998742 2334455555544 4689999999999865321 11234444442 23578
Q ss_pred EEEEecCCCC----------CHHHHHHHHHHHHHHh
Q 048709 167 FSEASALNGD----------NVDTAFFRLLQEIYAL 192 (203)
Q Consensus 167 ~~~~sa~~~~----------~i~~~~~~i~~~~~~~ 192 (203)
++.+||++|. |+..+|+.|++.+...
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 9999999995 7999999999887654
No 215
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.80 E-value=1.9e-21 Score=134.44 Aligned_cols=172 Identities=31% Similarity=0.586 Sum_probs=146.1
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCE-EEEEEEEeCCCchhhhhhhHhhhcCC
Q 048709 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSK-IIKAQIWDTAGQERYRAVTSAYYRGA 101 (203)
Q Consensus 23 ~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~~~~~~~~~~ 101 (203)
..+.+.+++.|+|..|+|||+++.+.+...++..+..+.+.++.......+.. .++++|||..|++++..+..-|++.+
T Consensus 20 ~kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea 99 (229)
T KOG4423|consen 20 KKREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEA 99 (229)
T ss_pred chhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCC
Confidence 34688999999999999999999999999998889899999988887776544 45788999999999999999999999
Q ss_pred cEEEEEEeCCCHHHHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCcccC-CCHHHHHHHHHHcCC-eEEEEecCCC
Q 048709 102 LGAVVVYDITKRQSFDHVARGVEELRAHAD----SSIRIILIGNKSDLVDMWA-VSAEDVVEFAEDQGL-FFSEASALNG 175 (203)
Q Consensus 102 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~-~~~~~sa~~~ 175 (203)
++.++|||+++.-+|+....|.+.+..... ..+|+++..||+|+..... ......-++.+++++ ..+++|+|.+
T Consensus 100 ~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Ken 179 (229)
T KOG4423|consen 100 HGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKEN 179 (229)
T ss_pred cceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccc
Confidence 999999999999999999999988766543 4578899999999865321 123566778888886 5999999999
Q ss_pred CCHHHHHHHHHHHHHHhhc
Q 048709 176 DNVDTAFFRLLQEIYALSK 194 (203)
Q Consensus 176 ~~i~~~~~~i~~~~~~~~~ 194 (203)
.+++|+.+.+++++.-...
T Consensus 180 kni~Ea~r~lVe~~lvnd~ 198 (229)
T KOG4423|consen 180 KNIPEAQRELVEKILVNDE 198 (229)
T ss_pred cChhHHHHHHHHHHHhhcc
Confidence 9999999999999876543
No 216
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.80 E-value=3.7e-18 Score=142.54 Aligned_cols=154 Identities=18% Similarity=0.150 Sum_probs=106.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC---CccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE---FCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
-|+++|..++|||||+++|++.. ...+.....+.+.....+...+ ...+.+|||||++.|.......+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 58999999999999999999743 2233333444433333332222 2347899999999987777777899999999
Q ss_pred EEeCCC---HHHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCcccCC--CHHHHHHHHHHcC---CeEEEEecCCCCC
Q 048709 107 VYDITK---RQSFDHVARGVEELRAHADSSIR-IILIGNKSDLVDMWAV--SAEDVVEFAEDQG---LFFSEASALNGDN 177 (203)
Q Consensus 107 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~---~~~~~~sa~~~~~ 177 (203)
|+|+++ +++.+.+ ..+.. .++| +++|+||+|+.+.... ..+++.+++...+ .+++++||++|.|
T Consensus 81 VVda~eg~~~qT~ehl----~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~g 153 (614)
T PRK10512 81 VVACDDGVMAQTREHL----AILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRG 153 (614)
T ss_pred EEECCCCCcHHHHHHH----HHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Confidence 999987 3443333 22222 2345 5799999999753221 1344555555444 6899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 048709 178 VDTAFFRLLQEIYA 191 (203)
Q Consensus 178 i~~~~~~i~~~~~~ 191 (203)
++++++.|.+....
T Consensus 154 I~~L~~~L~~~~~~ 167 (614)
T PRK10512 154 IDALREHLLQLPER 167 (614)
T ss_pred CHHHHHHHHHhhcc
Confidence 99999999875543
No 217
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.80 E-value=3.1e-18 Score=127.88 Aligned_cols=114 Identities=16% Similarity=0.149 Sum_probs=79.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCc--------cCC--------CCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhh
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFC--------FDS--------KSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV 93 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~--------~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 93 (203)
+|+++|.+|+|||||+++|+...-. ... ....+.........+.....++.+|||||+..|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999753110 000 001112222233333334568899999999988888
Q ss_pred hHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709 94 TSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147 (203)
Q Consensus 94 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 147 (203)
...+++.+|++++|+|+.+.... ....++..+.. .++|+++++||+|+.+
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~~ 130 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECccccC
Confidence 88899999999999999885432 23344444443 4789999999999863
No 218
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.80 E-value=2.8e-18 Score=127.84 Aligned_cols=162 Identities=22% Similarity=0.213 Sum_probs=109.4
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh------hh------h
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER------YR------A 92 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~------~~------~ 92 (203)
...-++|+|+|.||+|||||.|.+.+.++.+......+++....-+...+. .++.|+||||.-. +. .
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e-TQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE-TQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc-eEEEEecCCcccccchhhhHHHHHHhhh
Confidence 456799999999999999999999999998887777666666555544444 4899999999321 11 1
Q ss_pred hhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC-------------CCH--HHHH
Q 048709 93 VTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA-------------VSA--EDVV 157 (203)
Q Consensus 93 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-------------~~~--~~~~ 157 (203)
.....+..+|.+++|+|+++.-..-. .+.+..+... ..+|-+++.||.|...++. .+. -++.
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y--s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~ 224 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY--SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ 224 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH--hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence 12334678999999999996222111 2333344444 3678899999999875421 111 1111
Q ss_pred H-HHHHc---------CC----eEEEEecCCCCCHHHHHHHHHHHHH
Q 048709 158 E-FAEDQ---------GL----FFSEASALNGDNVDTAFFRLLQEIY 190 (203)
Q Consensus 158 ~-~~~~~---------~~----~~~~~sa~~~~~i~~~~~~i~~~~~ 190 (203)
+ |.... ++ .+|.+||++|.||+++-+++...+.
T Consensus 225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 1 11111 12 3899999999999999999887653
No 219
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.79 E-value=3.6e-18 Score=127.84 Aligned_cols=155 Identities=16% Similarity=0.172 Sum_probs=119.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhh-------hHhhhcCC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV-------TSAYYRGA 101 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~~~~~~~~ 101 (203)
-.|.+||.|++|||||+++|...+-.....+.++..+..-.+.+++.. ++.+-|.||...-.++ .-.+++.+
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhh
Confidence 357899999999999999999877666666777777777776665544 4899999995443322 23467889
Q ss_pred cEEEEEEeCCCH---HHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCe-EEEEecCCC
Q 048709 102 LGAVVVYDITKR---QSFDHVARGVEELRAHAD--SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLF-FSEASALNG 175 (203)
Q Consensus 102 d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~ 175 (203)
+.++||+|++.+ .-|++++.+..++..+.. .+.|.++|+||+|+++. ..+.+.++.....-+ ++++||+.+
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea---e~~~l~~L~~~lq~~~V~pvsA~~~ 352 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA---EKNLLSSLAKRLQNPHVVPVSAKSG 352 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH---HHHHHHHHHHHcCCCcEEEeeeccc
Confidence 999999999998 778888777777766554 67899999999999642 223346666666655 999999999
Q ss_pred CCHHHHHHHHHH
Q 048709 176 DNVDTAFFRLLQ 187 (203)
Q Consensus 176 ~~i~~~~~~i~~ 187 (203)
+++.++++.|.+
T Consensus 353 egl~~ll~~lr~ 364 (366)
T KOG1489|consen 353 EGLEELLNGLRE 364 (366)
T ss_pred cchHHHHHHHhh
Confidence 999999887754
No 220
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.79 E-value=6.3e-18 Score=138.33 Aligned_cols=155 Identities=16% Similarity=0.159 Sum_probs=117.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh------hhhHhhh--c
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR------AVTSAYY--R 99 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~--~ 99 (203)
..+|+++|+||+|||||+|+|++......+.|..+++...-.....+.. +.+.|.||-.+.. ...+.|+ .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 3569999999999999999999999888888888887777777766644 7899999943322 2333444 4
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 048709 100 GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVD 179 (203)
Q Consensus 100 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 179 (203)
..|+++-|+|+++-+. -+....+...-+.|+++++|++|....+-+ .=+..++.+..|+|++++||++|.|++
T Consensus 81 ~~D~ivnVvDAtnLeR------nLyltlQLlE~g~p~ilaLNm~D~A~~~Gi-~ID~~~L~~~LGvPVv~tvA~~g~G~~ 153 (653)
T COG0370 81 KPDLIVNVVDATNLER------NLYLTLQLLELGIPMILALNMIDEAKKRGI-RIDIEKLSKLLGVPVVPTVAKRGEGLE 153 (653)
T ss_pred CCCEEEEEcccchHHH------HHHHHHHHHHcCCCeEEEeccHhhHHhcCC-cccHHHHHHHhCCCEEEEEeecCCCHH
Confidence 5699999999998543 222222233358899999999998765333 235667788899999999999999999
Q ss_pred HHHHHHHHHHHH
Q 048709 180 TAFFRLLQEIYA 191 (203)
Q Consensus 180 ~~~~~i~~~~~~ 191 (203)
++.+.+++....
T Consensus 154 ~l~~~i~~~~~~ 165 (653)
T COG0370 154 ELKRAIIELAES 165 (653)
T ss_pred HHHHHHHHhccc
Confidence 999988865443
No 221
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.78 E-value=1.1e-17 Score=126.02 Aligned_cols=171 Identities=19% Similarity=0.161 Sum_probs=119.9
Q ss_pred cccccCCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCc-----hh
Q 048709 15 QQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ-----ER 89 (203)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-----~~ 89 (203)
+.....+|.-.+....|+|.|.||+|||||++.+++.+......|.++.....-.+.. ...+++++||||. +.
T Consensus 155 r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~--~~~R~QvIDTPGlLDRPl~E 232 (346)
T COG1084 155 RDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFER--GYLRIQVIDTPGLLDRPLEE 232 (346)
T ss_pred HHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeec--CCceEEEecCCcccCCChHH
Confidence 3445566766778899999999999999999999998877666676655555544444 3467899999992 11
Q ss_pred hh----hhhHhhhcCCcEEEEEEeCCCHH--HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHc
Q 048709 90 YR----AVTSAYYRGALGAVVVYDITKRQ--SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQ 163 (203)
Q Consensus 90 ~~----~~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~ 163 (203)
.+ .-..+.-+-.++++|+||.+... +.+.-..++..+..... .|+++|+||+|..+. -..+++..+....
T Consensus 233 rN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~--e~~~~~~~~~~~~ 308 (346)
T COG1084 233 RNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADE--EKLEEIEASVLEE 308 (346)
T ss_pred hcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccch--hHHHHHHHHHHhh
Confidence 11 11222334567899999999743 55555667777777663 899999999998863 2344555555554
Q ss_pred CCe-EEEEecCCCCCHHHHHHHHHHHHHH
Q 048709 164 GLF-FSEASALNGDNVDTAFFRLLQEIYA 191 (203)
Q Consensus 164 ~~~-~~~~sa~~~~~i~~~~~~i~~~~~~ 191 (203)
+.. ...+++..+.+++..-..+.....+
T Consensus 309 ~~~~~~~~~~~~~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 309 GGEEPLKISATKGCGLDKLREEVRKTALE 337 (346)
T ss_pred ccccccceeeeehhhHHHHHHHHHHHhhc
Confidence 443 6778888898988877777766433
No 222
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.78 E-value=3e-18 Score=126.87 Aligned_cols=148 Identities=21% Similarity=0.169 Sum_probs=90.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC--Ccc-------------------------CC--CCCcceeeEEEEEEECCEEEEEE
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE--FCF-------------------------DS--KSTIGVEFQTRTVTINSKIIKAQ 80 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~--~~~-------------------------~~--~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
+|+++|++++|||||+.+|+... ... .. ....+.+.......+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999985321 000 00 00111222222333333456789
Q ss_pred EEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHH------HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc--CCC
Q 048709 81 IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQS------FDHVARGVEELRAHADSSIRIILIGNKSDLVDMW--AVS 152 (203)
Q Consensus 81 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~ 152 (203)
+|||||+..|.......+..+|++++|+|+++... .......+...... ...|+++++||+|+.... ...
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~ 158 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVTVNWSEER 158 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEccccccccccHHH
Confidence 99999988777666667788999999999987421 11122222222221 236899999999997320 111
Q ss_pred H----HHHHHHHHHc-----CCeEEEEecCCCCCHH
Q 048709 153 A----EDVVEFAEDQ-----GLFFSEASALNGDNVD 179 (203)
Q Consensus 153 ~----~~~~~~~~~~-----~~~~~~~sa~~~~~i~ 179 (203)
. +++..++... .++++++||++|.|+.
T Consensus 159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1 2233334443 3679999999999986
No 223
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.78 E-value=3.5e-18 Score=126.06 Aligned_cols=113 Identities=20% Similarity=0.299 Sum_probs=78.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccCC-----------------CCCcceeeEE--EEEEE---CCEEEEEEEEeCCCc
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFDS-----------------KSTIGVEFQT--RTVTI---NSKIIKAQIWDTAGQ 87 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~~-----------------~~~~~~~~~~--~~~~~---~~~~~~~~l~D~~g~ 87 (203)
+|+++|+.|+|||||+++|+........ ....+..... ..+.+ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999874432210 0011112111 11111 355688999999999
Q ss_pred hhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 048709 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV 146 (203)
Q Consensus 88 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 146 (203)
..|......++..+|++++|+|+.+..+... ..++..... .+.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9888778888999999999999987655432 233333322 358999999999975
No 224
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.78 E-value=1.5e-17 Score=121.30 Aligned_cols=162 Identities=14% Similarity=0.131 Sum_probs=97.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcce-ee--EEEEEEECCEEEEEEEEeCCCchhhhhhhHh-----hhc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGV-EF--QTRTVTINSKIIKAQIWDTAGQERYRAVTSA-----YYR 99 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~-----~~~ 99 (203)
+++|+++|.+|+|||||+|+|++.........+.+. .. ....+... ....+.+|||||.......... .+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 479999999999999999999986543322122221 10 11111111 1236899999996433222222 256
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC-----------CCHHHHHHHHH----HcC
Q 048709 100 GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA-----------VSAEDVVEFAE----DQG 164 (203)
Q Consensus 100 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-----------~~~~~~~~~~~----~~~ 164 (203)
.+|++++|.+.. ....+ ..++..+... +.|+++|+||+|+..... ...+++.+.+. ..+
T Consensus 80 ~~d~~l~v~~~~-~~~~d--~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 80 EYDFFIIISSTR-FSSND--VKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred CcCEEEEEeCCC-CCHHH--HHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 789888885432 22111 2344444443 578999999999843211 11112222222 222
Q ss_pred ---CeEEEEecC--CCCCHHHHHHHHHHHHHHhhccc
Q 048709 165 ---LFFSEASAL--NGDNVDTAFFRLLQEIYALSKKE 196 (203)
Q Consensus 165 ---~~~~~~sa~--~~~~i~~~~~~i~~~~~~~~~~~ 196 (203)
-++|.+|+. .+.++..+.+.++..+.+.++..
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~~ 190 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRHV 190 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHHH
Confidence 368999998 67999999999999998866543
No 225
>PRK12736 elongation factor Tu; Reviewed
Probab=99.76 E-value=2.9e-17 Score=131.33 Aligned_cols=161 Identities=18% Similarity=0.116 Sum_probs=104.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCcc--------------CCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCF--------------DSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR 91 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 91 (203)
...++|+++|+.++|||||+++|++..... ......+.+.......+.....++.++||||+..|.
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHH
Confidence 346999999999999999999998631100 000122333334444454445678999999988876
Q ss_pred hhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCcccCCC---HHHHHHHHHHcC---
Q 048709 92 AVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR-IILIGNKSDLVDMWAVS---AEDVVEFAEDQG--- 164 (203)
Q Consensus 92 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~--- 164 (203)
.....-+..+|++++|+|+.....-. ....+..+.. .++| +++++||+|+.+..+.. .+++.+++...+
T Consensus 90 ~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 165 (394)
T PRK12736 90 KNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPG 165 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCc
Confidence 65555667889999999998632211 1222233332 3667 67899999987432211 235555655554
Q ss_pred --CeEEEEecCCCC--------CHHHHHHHHHHHHH
Q 048709 165 --LFFSEASALNGD--------NVDTAFFRLLQEIY 190 (203)
Q Consensus 165 --~~~~~~sa~~~~--------~i~~~~~~i~~~~~ 190 (203)
++++++||++|. ++.++++.+.+.+.
T Consensus 166 ~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 166 DDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 589999999983 56777777776654
No 226
>PRK12735 elongation factor Tu; Reviewed
Probab=99.75 E-value=4.6e-17 Score=130.27 Aligned_cols=161 Identities=19% Similarity=0.114 Sum_probs=103.8
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcC-------CCcc--C-----CCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKN-------EFCF--D-----SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR 91 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~-------~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 91 (203)
...++|+++|.+++|||||+++|++. .+.. . .....+.+.......+.....++.|+||||+..|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 35699999999999999999999862 1000 0 00122233333334444445578999999998876
Q ss_pred hhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCcccC---CCHHHHHHHHHHcC---
Q 048709 92 AVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRII-LIGNKSDLVDMWA---VSAEDVVEFAEDQG--- 164 (203)
Q Consensus 92 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~---~~~~~~~~~~~~~~--- 164 (203)
.....-+..+|++++|+|+.+.... +....+..+.. .++|.+ +++||+|+.+..+ ...+++..++..++
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~ 165 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG 165 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCc
Confidence 6666667889999999999874221 12233333332 357755 5799999974211 11235556665543
Q ss_pred --CeEEEEecCCCC----------CHHHHHHHHHHHHH
Q 048709 165 --LFFSEASALNGD----------NVDTAFFRLLQEIY 190 (203)
Q Consensus 165 --~~~~~~sa~~~~----------~i~~~~~~i~~~~~ 190 (203)
++++++||++|. ++.++++.|.+.+.
T Consensus 166 ~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 166 DDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred CceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 679999999984 56777777766543
No 227
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.75 E-value=2.8e-17 Score=121.21 Aligned_cols=113 Identities=15% Similarity=0.187 Sum_probs=78.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC--ccC--------------CCCCcceeeEEEEEEEC--------CEEEEEEEEeCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEF--CFD--------------SKSTIGVEFQTRTVTIN--------SKIIKAQIWDTA 85 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~--~~~--------------~~~~~~~~~~~~~~~~~--------~~~~~~~l~D~~ 85 (203)
+|+++|..++|||||+.+|+...- ... .....+.......+.+. +..+.+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999975321 100 00111111122222232 347889999999
Q ss_pred CchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 048709 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV 146 (203)
Q Consensus 86 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 146 (203)
|+..|......+++.+|++++|+|+.+....... ..+..... .++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~---~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK---ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCcc
Confidence 9999998889999999999999999986544332 22232222 467999999999975
No 228
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.75 E-value=1.6e-17 Score=122.55 Aligned_cols=160 Identities=18% Similarity=0.281 Sum_probs=101.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccCCC-CCcceeeEEEEEEECCEEEEEEEEeCCCchhhhh-----hhHhhhcCCcE
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSK-STIGVEFQTRTVTINSKIIKAQIWDTAGQERYRA-----VTSAYYRGALG 103 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-----~~~~~~~~~d~ 103 (203)
||+++|+.||||||+.+.++.+-.+.... -..+.+.....+... ..+.+.+||+||+..+-. .....++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~-~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFL-SFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECT-TSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecC-CCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 79999999999999999998865433221 122233333333322 235789999999865433 35678999999
Q ss_pred EEEEEeCCCHHHHHH---HHHHHHHHHhhcCCCCcEEEEEeCCCCCccc--C----CCHHHHHHHHHHcC---CeEEEEe
Q 048709 104 AVVVYDITKRQSFDH---VARGVEELRAHADSSIRIILIGNKSDLVDMW--A----VSAEDVVEFAEDQG---LFFSEAS 171 (203)
Q Consensus 104 ~i~v~d~~~~~s~~~---~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~----~~~~~~~~~~~~~~---~~~~~~s 171 (203)
+|||+|+.+.+-.+. +...+..+.+.. +++.+-+++.|+|+.... . ...+.+.+.+...+ +.++.||
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s-p~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYS-PNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHS-TT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhC-CCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 999999995433333 344444444433 788999999999986421 1 11233444455555 7899999
Q ss_pred cCCCCCHHHHHHHHHHHHHHh
Q 048709 172 ALNGDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 172 a~~~~~i~~~~~~i~~~~~~~ 192 (203)
..+ ..+-+.|..+++.+...
T Consensus 159 I~D-~Sly~A~S~Ivq~LiP~ 178 (232)
T PF04670_consen 159 IWD-ESLYEAWSKIVQKLIPN 178 (232)
T ss_dssp TTS-THHHHHHHHHHHTTSTT
T ss_pred CcC-cHHHHHHHHHHHHHccc
Confidence 988 58888999999887653
No 229
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.75 E-value=4.4e-17 Score=124.23 Aligned_cols=142 Identities=15% Similarity=0.226 Sum_probs=92.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccC----------CCCCcceeeEEEEEEECCEEEEEEEEeCCCchhh------
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFD----------SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY------ 90 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~------ 90 (203)
..++|+|+|.+|+|||||+|+|++..+... ..++.........+..++..+++.+|||||....
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 368999999999999999999999876543 2334444555556666788889999999993221
Q ss_pred -hhh-------------------hHhhhc--CCcEEEEEEeCCCHHHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709 91 -RAV-------------------TSAYYR--GALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147 (203)
Q Consensus 91 -~~~-------------------~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 147 (203)
..+ ....+. .+|+++++++.+... +... ...+..+. ..+|+++|+||+|+..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~----~~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLS----KRVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHh----ccCCEEEEEECCCcCC
Confidence 100 001222 467788888876411 1111 12222222 2689999999999865
Q ss_pred c--cCCCHHHHHHHHHHcCCeEEEEecC
Q 048709 148 M--WAVSAEDVVEFAEDQGLFFSEASAL 173 (203)
Q Consensus 148 ~--~~~~~~~~~~~~~~~~~~~~~~sa~ 173 (203)
. .....+.+.+.+..++++++.+...
T Consensus 158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 158 PEELKEFKQRIMEDIEEHNIKIYKFPED 185 (276)
T ss_pred HHHHHHHHHHHHHHHHHcCCceECCCCC
Confidence 2 2233556677778888888876653
No 230
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.75 E-value=5.3e-17 Score=130.00 Aligned_cols=147 Identities=18% Similarity=0.139 Sum_probs=95.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCC------cc---C-----CCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEF------CF---D-----SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR 91 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~------~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 91 (203)
.+.++|+++|..++|||||+++|++... .. . .....+.+.......++....++.+|||||++.|.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~ 89 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence 3569999999999999999999974210 00 0 00112233334444555555678999999998887
Q ss_pred hhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCcccCC---CHHHHHHHHHHcC---
Q 048709 92 AVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRII-LIGNKSDLVDMWAV---SAEDVVEFAEDQG--- 164 (203)
Q Consensus 92 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~---~~~~~~~~~~~~~--- 164 (203)
.....-...+|++++|+|+.+..... ..+.+..+.. .++|.+ +++||+|+.+..+. ..+++.+++...+
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (394)
T TIGR00485 90 KNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPG 165 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 65555567889999999998732211 1222233332 356655 68999998753221 1235666666665
Q ss_pred --CeEEEEecCCCC
Q 048709 165 --LFFSEASALNGD 176 (203)
Q Consensus 165 --~~~~~~sa~~~~ 176 (203)
++++++||++|.
T Consensus 166 ~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 166 DDTPIIRGSALKAL 179 (394)
T ss_pred cCccEEECcccccc
Confidence 689999999874
No 231
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.75 E-value=1.1e-16 Score=121.55 Aligned_cols=115 Identities=20% Similarity=0.186 Sum_probs=78.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC--CccC--------CCC----------CcceeeEEEEEEECCEEEEEEEEeCCCch
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNE--FCFD--------SKS----------TIGVEFQTRTVTINSKIIKAQIWDTAGQE 88 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~--~~~~--------~~~----------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 88 (203)
.+|+++|++|+|||||+++|+... .... ... ..+.........++....++++|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 579999999999999999997421 1100 000 01122333334445556789999999998
Q ss_pred hhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147 (203)
Q Consensus 89 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 147 (203)
.|.......++.+|++++|+|+++.... ....++..... .++|+++++||+|+.+
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~ 137 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREG 137 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence 8887677788999999999999875321 22233333222 4789999999999865
No 232
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.75 E-value=1.2e-17 Score=133.84 Aligned_cols=172 Identities=21% Similarity=0.235 Sum_probs=124.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
...+||+++|..|+||||||-+|...++.+.-++-...-.-.. .+.-..+...+.|++..+.-+.-...-++.+|+++
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPa--dvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPA--DVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCC--ccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence 3569999999999999999999999988766544332211111 12223355789999865554444566689999999
Q ss_pred EEEeCCCHHHHHHH-HHHHHHHHhhcC--CCCcEEEEEeCCCCCcccCCCHHH-HHHHHHHc-CC-eEEEEecCCCCCHH
Q 048709 106 VVYDITKRQSFDHV-ARGVEELRAHAD--SSIRIILIGNKSDLVDMWAVSAED-VVEFAEDQ-GL-FFSEASALNGDNVD 179 (203)
Q Consensus 106 ~v~d~~~~~s~~~~-~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~-~~-~~~~~sa~~~~~i~ 179 (203)
+||+++++++++.+ ..|+..+.+..+ .++|+|+|+||+|.........+. ...+...+ .+ ..++|||++..++.
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~ 164 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVS 164 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhH
Confidence 99999999999998 578888887765 789999999999987654443333 22222222 22 26889999999999
Q ss_pred HHHHHHHHHHHHhhcccccc
Q 048709 180 TAFFRLLQEIYALSKKELEC 199 (203)
Q Consensus 180 ~~~~~i~~~~~~~~~~~~~~ 199 (203)
++|-...+.+...-...+..
T Consensus 165 e~fYyaqKaVihPt~PLyda 184 (625)
T KOG1707|consen 165 ELFYYAQKAVIHPTSPLYDA 184 (625)
T ss_pred hhhhhhhheeeccCcccccc
Confidence 99988888877765544443
No 233
>CHL00071 tufA elongation factor Tu
Probab=99.75 E-value=8.5e-17 Score=129.28 Aligned_cols=149 Identities=17% Similarity=0.123 Sum_probs=96.8
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCcc------C--------CCCCcceeeEEEEEEECCEEEEEEEEeCCCchhh
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCF------D--------SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY 90 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 90 (203)
....++|+++|.+++|||||+++|++..-.. . .....+.+.......+.....++.|+||||+..|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 3456999999999999999999998641100 0 0011223333333334444457889999998887
Q ss_pred hhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCcccCC---CHHHHHHHHHHcC--
Q 048709 91 RAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR-IILIGNKSDLVDMWAV---SAEDVVEFAEDQG-- 164 (203)
Q Consensus 91 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~-- 164 (203)
.......+..+|++++|+|+.....- +....+..+.. .++| +++++||+|+.+..+. ..+++..++...+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~-qt~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~ 164 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPMP-QTKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP 164 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 66666678899999999999864221 12223333332 3577 7789999999753221 1235555655543
Q ss_pred ---CeEEEEecCCCCC
Q 048709 165 ---LFFSEASALNGDN 177 (203)
Q Consensus 165 ---~~~~~~sa~~~~~ 177 (203)
++++++||.+|.+
T Consensus 165 ~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 165 GDDIPIVSGSALLALE 180 (409)
T ss_pred CCcceEEEcchhhccc
Confidence 6899999998864
No 234
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.75 E-value=1.1e-16 Score=118.54 Aligned_cols=153 Identities=20% Similarity=0.159 Sum_probs=94.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccCCCC----------------C-------cceeeEEE-------------EEEEC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKS----------------T-------IGVEFQTR-------------TVTIN 73 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~----------------~-------~~~~~~~~-------------~~~~~ 73 (203)
||+++|..++|||||+++|..+.+...... + .+.+.... ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999987554321110 0 00000000 00111
Q ss_pred CEEEEEEEEeCCCchhhhhhhHhhhc--CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC-
Q 048709 74 SKIIKAQIWDTAGQERYRAVTSAYYR--GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA- 150 (203)
Q Consensus 74 ~~~~~~~l~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~- 150 (203)
.....+.++||||...|.......+. .+|++++|+|+.....-. ...++..+.. .++|+++++||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALA---LNIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCEEEEEECccccCHHHH
Confidence 12356889999999888654443343 689999999998643321 2233333333 4688999999999865311
Q ss_pred -CCHHHHHHHHHH--------------------------cCCeEEEEecCCCCCHHHHHHHHH
Q 048709 151 -VSAEDVVEFAED--------------------------QGLFFSEASALNGDNVDTAFFRLL 186 (203)
Q Consensus 151 -~~~~~~~~~~~~--------------------------~~~~~~~~sa~~~~~i~~~~~~i~ 186 (203)
...+++.+++.. ..+|++.+||.+|.|+++++..|.
T Consensus 157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 112223333221 124899999999999998887664
No 235
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.74 E-value=1.6e-17 Score=122.49 Aligned_cols=175 Identities=15% Similarity=0.152 Sum_probs=118.0
Q ss_pred cccccCCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEE-EECCEEEEEEEEeCCCchh----
Q 048709 15 QQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTV-TINSKIIKAQIWDTAGQER---- 89 (203)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~D~~g~~~---- 89 (203)
.++.++.+-....+++|+++|.+|+||||+||+|+.++..+...-..+.+...... .+++ -.+.|||+||...
T Consensus 26 l~~~~~~~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~ 103 (296)
T COG3596 26 LEQLRMLQLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDK 103 (296)
T ss_pred HHHhhhhhhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhh
Confidence 34444555456678999999999999999999999877655543333333333322 3344 3478999999433
Q ss_pred ---hhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcc-------cCCCHHHHHHH
Q 048709 90 ---YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM-------WAVSAEDVVEF 159 (203)
Q Consensus 90 ---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------~~~~~~~~~~~ 159 (203)
++.....++...|.++++.++.++.---.. ++++.+.... .+.++++++|++|...+ ...+...++++
T Consensus 104 D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qf 181 (296)
T COG3596 104 DAEHRQLYRDYLPKLDLVLWLIKADDRALGTDE-DFLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQF 181 (296)
T ss_pred hHHHHHHHHHHhhhccEEEEeccCCCccccCCH-HHHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHH
Confidence 677788899999999999999986422222 3333333322 34789999999998643 11222233333
Q ss_pred HHH----------cCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q 048709 160 AED----------QGLFFSEASALNGDNVDTAFFRLLQEIYALS 193 (203)
Q Consensus 160 ~~~----------~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~~ 193 (203)
... .-.|++..+...+.|++.+...++..+....
T Consensus 182 i~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~ 225 (296)
T COG3596 182 IEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPVEA 225 (296)
T ss_pred HHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCcccc
Confidence 321 1247888899999999999999999887543
No 236
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.73 E-value=9.3e-17 Score=121.64 Aligned_cols=163 Identities=17% Similarity=0.042 Sum_probs=113.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhh-------hhhhHhhhcCCc
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY-------RAVTSAYYRGAL 102 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~~~d 102 (203)
-|.+||.|++|||||++++...+-.....+.++..+..-.+.++. .-.|++-|.||...- ....-.++..+.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 467999999999999999998777666667777777777776633 335899999994321 222334678889
Q ss_pred EEEEEEeCCCHHH---HHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEE-EecCCCC
Q 048709 103 GAVVVYDITKRQS---FDHVARGVEELRAHAD--SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSE-ASALNGD 176 (203)
Q Consensus 103 ~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~sa~~~~ 176 (203)
++++|+|++..+. .++......++..+.. .+.|.++|+||+|+....+........+....++.... +|+.++.
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~ 319 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTRE 319 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhccc
Confidence 9999999986432 3444444455555433 67899999999997653222222233333344443222 9999999
Q ss_pred CHHHHHHHHHHHHHHhh
Q 048709 177 NVDTAFFRLLQEIYALS 193 (203)
Q Consensus 177 ~i~~~~~~i~~~~~~~~ 193 (203)
|++++...+.+.+....
T Consensus 320 g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 320 GLDELLRALAELLEETK 336 (369)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999888887764
No 237
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.72 E-value=5e-16 Score=113.17 Aligned_cols=159 Identities=15% Similarity=0.158 Sum_probs=99.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCC--CCcceeeEEEEEEECCEEEEEEEEeCCCchhhh--------hhh---H
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSK--STIGVEFQTRTVTINSKIIKAQIWDTAGQERYR--------AVT---S 95 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------~~~---~ 95 (203)
++|+++|.+|+|||||+|+|++.+...... +..+..........++ .++.++||||..... .+. .
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 479999999999999999999987543332 2222333333334444 468999999954321 111 1
Q ss_pred hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCC--CCcEEEEEeCCCCCcccC------CCHHHHHHHHHHcCCeE
Q 048709 96 AYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS--SIRIILIGNKSDLVDMWA------VSAEDVVEFAEDQGLFF 167 (203)
Q Consensus 96 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~~------~~~~~~~~~~~~~~~~~ 167 (203)
....+.|++++|+++.+. +-.+ ...++.+....+. -.++++++|+.|...... .....++......+-.+
T Consensus 79 ~~~~g~~~illVi~~~~~-t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 79 LSAPGPHAFLLVVPLGRF-TEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred hcCCCCEEEEEEEECCCc-CHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 124678999999999872 2222 2333444443331 246899999999765321 11245566666666666
Q ss_pred EEEec-----CCCCCHHHHHHHHHHHHHH
Q 048709 168 SEASA-----LNGDNVDTAFFRLLQEIYA 191 (203)
Q Consensus 168 ~~~sa-----~~~~~i~~~~~~i~~~~~~ 191 (203)
+.++. ..+.+++++++.|.+.+.+
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 66654 4567788888888777765
No 238
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=6.5e-17 Score=110.09 Aligned_cols=153 Identities=18% Similarity=0.251 Sum_probs=117.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 107 (203)
.=|++++|..|+|||||++.|.+.+..... || ..++...+.+.+ .+++-+|.+|+..-+..+..|+..+|++++.
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~qhv-PT--lHPTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQHV-PT--LHPTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred CceEEEEeecCCchhhHHHHHccccccccC-CC--cCCChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 358999999999999999999887764433 44 334444555655 6678999999998889999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHH---c-----------C---CeEEE
Q 048709 108 YDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAED---Q-----------G---LFFSE 169 (203)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~---~-----------~---~~~~~ 169 (203)
+|+-+.+.+.+.+..++.+..... ..+|+++.+||+|.+. ....++.+..... . + +.++.
T Consensus 95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~--a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfm 172 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPY--AASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFM 172 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCC--cccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEE
Confidence 999999999999888888776665 7899999999999987 3455554433211 1 1 24788
Q ss_pred EecCCCCCHHHHHHHHHH
Q 048709 170 ASALNGDNVDTAFFRLLQ 187 (203)
Q Consensus 170 ~sa~~~~~i~~~~~~i~~ 187 (203)
||...+.+.-+.|.|+..
T Consensus 173 csi~~~~gy~e~fkwl~q 190 (193)
T KOG0077|consen 173 CSIVRKMGYGEGFKWLSQ 190 (193)
T ss_pred EEEEccCccceeeeehhh
Confidence 888888887777777654
No 239
>PRK09866 hypothetical protein; Provisional
Probab=99.71 E-value=1.8e-16 Score=129.68 Aligned_cols=108 Identities=19% Similarity=0.163 Sum_probs=73.4
Q ss_pred EEEEEeCCCchh-----hhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCC
Q 048709 78 KAQIWDTAGQER-----YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVS 152 (203)
Q Consensus 78 ~~~l~D~~g~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 152 (203)
++.|+||||... ........+..+|+++||+|++...+..+. ..+..+.+. +...|+++|+||+|..+.....
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~-~K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILAV-GQSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhc-CCCCCEEEEEEcccCCCcccch
Confidence 578999999643 222344579999999999999874332221 223333332 2236999999999986533333
Q ss_pred HHHHHHHHH----HcC---CeEEEEecCCCCCHHHHHHHHHH
Q 048709 153 AEDVVEFAE----DQG---LFFSEASALNGDNVDTAFFRLLQ 187 (203)
Q Consensus 153 ~~~~~~~~~----~~~---~~~~~~sa~~~~~i~~~~~~i~~ 187 (203)
.+.+..+.. ... ..++++||+.|.|++.+++.|.+
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 556666543 222 35999999999999999988876
No 240
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.71 E-value=5.7e-16 Score=116.60 Aligned_cols=156 Identities=20% Similarity=0.159 Sum_probs=112.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh-------hhhHhhhc
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR-------AVTSAYYR 99 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~ 99 (203)
-.-+++++|.|++|||||++.|++-+......+.++.+...-.+.+++ .++++.|+||.-.-. ...-...+
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R 139 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVAR 139 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeec
Confidence 357899999999999999999999888777667777777777777766 667999999842211 22345679
Q ss_pred CCcEEEEEEeCCCHHH-HHHHHHHHHHHHh--------------------------------------------------
Q 048709 100 GALGAVVVYDITKRQS-FDHVARGVEELRA-------------------------------------------------- 128 (203)
Q Consensus 100 ~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~-------------------------------------------------- 128 (203)
+||++++|+|+..... .+.+.+.++....
T Consensus 140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~ 219 (365)
T COG1163 140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL 219 (365)
T ss_pred cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence 9999999999986443 3333322221100
Q ss_pred ---------------hcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 048709 129 ---------------HADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA 191 (203)
Q Consensus 129 ---------------~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~ 191 (203)
.+..-+|.+.|.||.|+.. .+++....+.. ..+.+||+.+.|++++.+.|-+.+--
T Consensus 220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~l 290 (365)
T COG1163 220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLGL 290 (365)
T ss_pred EecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhCe
Confidence 0113489999999999875 34444444444 78899999999999999888877643
No 241
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.71 E-value=8.2e-16 Score=118.97 Aligned_cols=81 Identities=15% Similarity=0.217 Sum_probs=57.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEE---------------------CC-EEEEEEEEeCCCc-
Q 048709 31 VVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTI---------------------NS-KIIKAQIWDTAGQ- 87 (203)
Q Consensus 31 i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~l~D~~g~- 87 (203)
|+++|.|++|||||+|+|++........+..+.++......+ ++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 589999999999999999998765444344443443322221 22 3467999999996
Q ss_pred ---hhhhhhhHh---hhcCCcEEEEEEeCC
Q 048709 88 ---ERYRAVTSA---YYRGALGAVVVYDIT 111 (203)
Q Consensus 88 ---~~~~~~~~~---~~~~~d~~i~v~d~~ 111 (203)
+.+..+-.. .++++|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 334443333 589999999999997
No 242
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.71 E-value=1.3e-15 Score=101.68 Aligned_cols=105 Identities=22% Similarity=0.232 Sum_probs=70.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC-ccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh----------hhhhhHhhh
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEF-CFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER----------YRAVTSAYY 98 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~~ 98 (203)
+|+|+|.+|+|||||+|+|++... .....+..+.......+.+++.. +.++||||... +.... ..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~-~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFL-EQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHH-HHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHH-HHH
Confidence 699999999999999999998643 23333344444444455566655 46999999432 11222 334
Q ss_pred cCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 048709 99 RGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNK 142 (203)
Q Consensus 99 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK 142 (203)
..+|++++|+|++++.. +.....+..+. .+.|+++|+||
T Consensus 78 ~~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 78 SKSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp CTESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HHCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 89999999999888422 22223333332 57899999998
No 243
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.70 E-value=7.2e-16 Score=126.80 Aligned_cols=118 Identities=16% Similarity=0.151 Sum_probs=79.9
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhc--CCCccC--------CC----------CCcceeeEEEEEEECCEEEEEEEEeCC
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTK--NEFCFD--------SK----------STIGVEFQTRTVTINSKIIKAQIWDTA 85 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~--~~~~~~--------~~----------~~~~~~~~~~~~~~~~~~~~~~l~D~~ 85 (203)
....+|+++|++++|||||+++|+. +..... .. ..-+.........++...+.+++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 3567999999999999999999963 211100 00 001222233333344445778999999
Q ss_pred CchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147 (203)
Q Consensus 86 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 147 (203)
|+..|......++..+|++++|+|+++.... ....++..... .++|+++++||+|+..
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRDG 145 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCcccc
Confidence 9998887777788999999999999874321 22333333322 5789999999999853
No 244
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.70 E-value=6.9e-16 Score=117.68 Aligned_cols=112 Identities=21% Similarity=0.196 Sum_probs=76.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccCC------------------CCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFDS------------------KSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR 91 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 91 (203)
+|+++|.+|+|||||+++|+...-.... ....+.......+..+ ..++++|||||...+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK--GHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEEC--CEEEEEEECcCHHHHH
Confidence 5899999999999999999753211000 0111122222233333 3578999999998887
Q ss_pred hhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709 92 AVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147 (203)
Q Consensus 92 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 147 (203)
.....++..+|++++|+|+++....... ..+..+.. .++|+++++||+|...
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~~~~~---~~~p~iivvNK~D~~~ 130 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTE-KLWEFADE---AGIPRIIFINKMDRER 130 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCccCC
Confidence 7778889999999999999885443322 22233322 4789999999999876
No 245
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=1.4e-16 Score=125.58 Aligned_cols=168 Identities=21% Similarity=0.238 Sum_probs=111.9
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh-hhh--------hhH
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER-YRA--------VTS 95 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~--------~~~ 95 (203)
....++|+++|+||+|||||+|+|...+..... |..|++....+..++-+++.+.|.||+|... -.. ...
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVS-pv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVS-PVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeC-CCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHH
Confidence 345699999999999999999999999988666 5555666665555555568889999999544 111 123
Q ss_pred hhhcCCcEEEEEEeCC--CHHHHHHHHHHHHHHHhhcC------CCCcEEEEEeCCCCCcc-cCCCHHHHHHHHHHcC--
Q 048709 96 AYYRGALGAVVVYDIT--KRQSFDHVARGVEELRAHAD------SSIRIILIGNKSDLVDM-WAVSAEDVVEFAEDQG-- 164 (203)
Q Consensus 96 ~~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~------~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~-- 164 (203)
..+..+|++++|+|+. +-++...+.+.+.....-.. ...|++++.||.|+... .+... ....+....+
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~-~~~~~~~~~~~~ 422 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTK-IPVVYPSAEGRS 422 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccC-CceeccccccCc
Confidence 4578899999999994 33333333333333322222 23789999999999764 11111 1111222121
Q ss_pred -C-eEEEEecCCCCCHHHHHHHHHHHHHHhhc
Q 048709 165 -L-FFSEASALNGDNVDTAFFRLLQEIYALSK 194 (203)
Q Consensus 165 -~-~~~~~sa~~~~~i~~~~~~i~~~~~~~~~ 194 (203)
. .+.++|+++++|++++...+.+.......
T Consensus 423 ~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 423 VFPIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred ccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 2 35569999999999999999888766543
No 246
>PLN03126 Elongation factor Tu; Provisional
Probab=99.69 E-value=1.3e-15 Score=123.91 Aligned_cols=148 Identities=17% Similarity=0.112 Sum_probs=96.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCC------CccC--------CCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNE------FCFD--------SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR 91 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 91 (203)
...++|+++|.+++|||||+++|++.. .... .....+.+.......++....++.++|+||+..|-
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~ 158 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 158 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH
Confidence 456999999999999999999998521 1000 01122233333333343344578999999998887
Q ss_pred hhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCcccCC---CHHHHHHHHHHc----
Q 048709 92 AVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR-IILIGNKSDLVDMWAV---SAEDVVEFAEDQ---- 163 (203)
Q Consensus 92 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~---- 163 (203)
.....-+..+|++++|+|+.+...-. ..+.+..+.. .++| +++++||+|+.+..+. ..+++..++...
T Consensus 159 ~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~ 234 (478)
T PLN03126 159 KNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPG 234 (478)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 76666778999999999998743222 2233333333 3677 7889999998753211 123455555553
Q ss_pred -CCeEEEEecCCCCC
Q 048709 164 -GLFFSEASALNGDN 177 (203)
Q Consensus 164 -~~~~~~~sa~~~~~ 177 (203)
.++++.+|+.+|.+
T Consensus 235 ~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 235 DDIPIISGSALLALE 249 (478)
T ss_pred CcceEEEEEcccccc
Confidence 46899999988753
No 247
>PRK00049 elongation factor Tu; Reviewed
Probab=99.69 E-value=1.7e-15 Score=121.20 Aligned_cols=160 Identities=18% Similarity=0.107 Sum_probs=102.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCc------cC--------CCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFC------FD--------SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR 91 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 91 (203)
...++|+++|..++|||||+++|++.... .. .....+.+.......+.....++.++||||+..|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 35699999999999999999999873110 00 00122233333344444445578899999998876
Q ss_pred hhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCcccCC---CHHHHHHHHHHc----
Q 048709 92 AVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRII-LIGNKSDLVDMWAV---SAEDVVEFAEDQ---- 163 (203)
Q Consensus 92 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~---~~~~~~~~~~~~---- 163 (203)
......+..+|++++|+|+.....- +....+..+.. .++|.+ +++||+|+.+.... ..+++.+++...
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~~-qt~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG 165 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCch-HHHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCc
Confidence 6666668899999999999874321 22233333333 357875 68999999742111 122444555443
Q ss_pred -CCeEEEEecCCCC----------CHHHHHHHHHHHH
Q 048709 164 -GLFFSEASALNGD----------NVDTAFFRLLQEI 189 (203)
Q Consensus 164 -~~~~~~~sa~~~~----------~i~~~~~~i~~~~ 189 (203)
.++++.+||++|. ++..+++.|.+.+
T Consensus 166 ~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 166 DDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred cCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 3689999999875 4556666666543
No 248
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.69 E-value=5.2e-16 Score=126.49 Aligned_cols=153 Identities=22% Similarity=0.218 Sum_probs=93.8
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccC-------------CCC------------------CcceeeEEEEEEECC
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFD-------------SKS------------------TIGVEFQTRTVTINS 74 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~-------------~~~------------------~~~~~~~~~~~~~~~ 74 (203)
...++|+++|.+++|||||+.+|+...-... ... .-+.+.......+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 4569999999999999999999975321100 000 001112222223333
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHH
Q 048709 75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAE 154 (203)
Q Consensus 75 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 154 (203)
...++.|+||||+..|......-+..+|++++|+|+.....-..... +..+.... ..|+++++||+|+.+......+
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~-~~l~~~lg--~~~iIvvvNKiD~~~~~~~~~~ 181 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRH-SFIATLLG--IKHLVVAVNKMDLVDYSEEVFE 181 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHH-HHHHHHhC--CCceEEEEEeeccccchhHHHH
Confidence 45678999999988886555555799999999999986422111111 11112111 2468999999998743221122
Q ss_pred HH----HHHHHHc----CCeEEEEecCCCCCHHHH
Q 048709 155 DV----VEFAEDQ----GLFFSEASALNGDNVDTA 181 (203)
Q Consensus 155 ~~----~~~~~~~----~~~~~~~sa~~~~~i~~~ 181 (203)
++ ..++... .++++++||++|.|+.+.
T Consensus 182 ~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 182 RIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 22 2333332 378999999999998764
No 249
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.69 E-value=3.1e-16 Score=119.12 Aligned_cols=112 Identities=19% Similarity=0.163 Sum_probs=76.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc--CCCc----------------cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh
Q 048709 30 KVVVIGDSAVGKSQILSRFTK--NEFC----------------FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR 91 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~--~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 91 (203)
+|+++|++|+|||||+++|+. +... .+..+..+.......+.. ...++.+|||||...+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~--~~~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW--KDHRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE--CCEEEEEEECCCcHHHH
Confidence 589999999999999999963 1110 011112222222233333 34678999999998888
Q ss_pred hhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709 92 AVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147 (203)
Q Consensus 92 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 147 (203)
......++.+|++++|+|+.+...-.. ...+..+.. .++|+++++||+|+.+
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 878889999999999999987432211 233333332 4689999999999875
No 250
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.69 E-value=5.5e-16 Score=124.42 Aligned_cols=149 Identities=26% Similarity=0.262 Sum_probs=91.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC--Ccc-------------CC-----------C-----CCcceeeEEEEEEECCEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNE--FCF-------------DS-----------K-----STIGVEFQTRTVTINSKII 77 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~--~~~-------------~~-----------~-----~~~~~~~~~~~~~~~~~~~ 77 (203)
++|+++|+.++|||||+.+|+... ... .. + ..-+.+.......+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 589999999999999999996421 100 00 0 0011112222223333345
Q ss_pred EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCC----H
Q 048709 78 KAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVS----A 153 (203)
Q Consensus 78 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~----~ 153 (203)
++.|+||||++.|......-+..+|++++|+|+.....-... +.+..+.... ..++++++||+|+.+..... .
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~-~~~~~~~~~~--~~~iivviNK~D~~~~~~~~~~~i~ 157 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR-RHSYIASLLG--IRHVVLAVNKMDLVDYDEEVFENIK 157 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH-HHHHHHHHcC--CCcEEEEEEecccccchHHHHHHHH
Confidence 789999999988876566678899999999999864321111 1112222211 23588999999986522111 1
Q ss_pred HHHHHHHHHcC---CeEEEEecCCCCCHHH
Q 048709 154 EDVVEFAEDQG---LFFSEASALNGDNVDT 180 (203)
Q Consensus 154 ~~~~~~~~~~~---~~~~~~sa~~~~~i~~ 180 (203)
+++..+....+ ++++++||++|.|+.+
T Consensus 158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 23333344443 4799999999999875
No 251
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=4.5e-15 Score=118.66 Aligned_cols=156 Identities=21% Similarity=0.270 Sum_probs=115.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECC-EEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINS-KIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
++.=|+++|+..-|||||+..+-+........-..+.+..-+.+..+. ..-.+.|+||||++.|..+...=..-+|+++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 446689999999999999999988877655444444444445555431 2346889999999999999988888999999
Q ss_pred EEEeCCC---HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcC---------CeEEEEecC
Q 048709 106 VVYDITK---RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQG---------LFFSEASAL 173 (203)
Q Consensus 106 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~sa~ 173 (203)
+|+++++ |++.+.+ +.+.. .++|+++.+||+|.++ .+.+.+..-...++ ..++++||+
T Consensus 84 LVVa~dDGv~pQTiEAI----~hak~---a~vP~iVAiNKiDk~~---~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~ 153 (509)
T COG0532 84 LVVAADDGVMPQTIEAI----NHAKA---AGVPIVVAINKIDKPE---ANPDKVKQELQEYGLVPEEWGGDVIFVPVSAK 153 (509)
T ss_pred EEEEccCCcchhHHHHH----HHHHH---CCCCEEEEEecccCCC---CCHHHHHHHHHHcCCCHhhcCCceEEEEeecc
Confidence 9999998 4443333 33333 5899999999999984 34555555555544 368999999
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q 048709 174 NGDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 174 ~~~~i~~~~~~i~~~~~~~ 192 (203)
+|.|+++++..++-...-+
T Consensus 154 tg~Gi~eLL~~ill~aev~ 172 (509)
T COG0532 154 TGEGIDELLELILLLAEVL 172 (509)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999998777555444
No 252
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.68 E-value=1.2e-15 Score=123.52 Aligned_cols=150 Identities=18% Similarity=0.191 Sum_probs=100.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCC--Ccc---------------------------CCCCCcceeeEEEEEEECCEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNE--FCF---------------------------DSKSTIGVEFQTRTVTINSKII 77 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~ 77 (203)
..++|+++|+.++|||||+.+|+... ... ......+.+.......+.....
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 85 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY 85 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence 45999999999999999999886311 000 0001112223333334455567
Q ss_pred EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHH-------HHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCccc
Q 048709 78 KAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSF-------DHVARGVEELRAHADSSIR-IILIGNKSDLVDMW 149 (203)
Q Consensus 78 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~ 149 (203)
.+.++|+||+..|.......+..+|++++|+|+.+. .+ .+.++.+..+.. .++| +++++||+|+....
T Consensus 86 ~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~~~~ 161 (447)
T PLN00043 86 YCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDATTPK 161 (447)
T ss_pred EEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCCchh
Confidence 889999999999998888889999999999999873 12 233333222222 3564 78899999976210
Q ss_pred ------CCCHHHHHHHHHHcC-----CeEEEEecCCCCCHHH
Q 048709 150 ------AVSAEDVVEFAEDQG-----LFFSEASALNGDNVDT 180 (203)
Q Consensus 150 ------~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~ 180 (203)
....+++..++...+ ++++++||++|.|+.+
T Consensus 162 ~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 162 YSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 012456677777665 6799999999999853
No 253
>PRK13351 elongation factor G; Reviewed
Probab=99.68 E-value=1.8e-15 Score=128.97 Aligned_cols=116 Identities=17% Similarity=0.152 Sum_probs=81.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCC--C------ccCC----------CCCcceeeEEEEEEECCEEEEEEEEeCCCc
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNE--F------CFDS----------KSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~--~------~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 87 (203)
+...+|+|+|..|+|||||+++|+... . .... ....+.......+.. ....+++|||||+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~--~~~~i~liDtPG~ 83 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW--DNHRINLIDTPGH 83 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE--CCEEEEEEECCCc
Confidence 456899999999999999999997521 0 0000 011112222222333 3568899999999
Q ss_pred hhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147 (203)
Q Consensus 88 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 147 (203)
..|......+++.+|++++|+|+++.........| ..+.. .++|+++++||+|+..
T Consensus 84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence 98888888899999999999999986555443333 33322 4789999999999864
No 254
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.67 E-value=1.8e-15 Score=127.77 Aligned_cols=153 Identities=25% Similarity=0.214 Sum_probs=93.8
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCC------------CCC-------------------cceeeEEEEEEEC
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDS------------KST-------------------IGVEFQTRTVTIN 73 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~------------~~~-------------------~~~~~~~~~~~~~ 73 (203)
....++|+++|++++|||||+++|+...-.... .-+ -+.+.......+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 345689999999999999999999864321110 000 0111112222233
Q ss_pred CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCH
Q 048709 74 SKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSA 153 (203)
Q Consensus 74 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 153 (203)
....++.|+||||...|.......+..+|++++|+|+.....-.. ...+..+... ...++++++||+|+.+......
T Consensus 101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~~--~~~~iivvvNK~D~~~~~~~~~ 177 (632)
T PRK05506 101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASLL--GIRHVVLAVNKMDLVDYDQEVF 177 (632)
T ss_pred cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHHh--CCCeEEEEEEecccccchhHHH
Confidence 334567899999998876655566889999999999976422111 1111222222 1256889999999864211112
Q ss_pred ----HHHHHHHHHcC---CeEEEEecCCCCCHHH
Q 048709 154 ----EDVVEFAEDQG---LFFSEASALNGDNVDT 180 (203)
Q Consensus 154 ----~~~~~~~~~~~---~~~~~~sa~~~~~i~~ 180 (203)
+++.++....+ ++++++||++|.|+.+
T Consensus 178 ~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 178 DEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 22333444444 4699999999999874
No 255
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.67 E-value=2.1e-15 Score=122.10 Aligned_cols=151 Identities=17% Similarity=0.104 Sum_probs=97.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC--CCcc----------------------CCC-----CCcceeeEEEEEEECCEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKN--EFCF----------------------DSK-----STIGVEFQTRTVTINSKII 77 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~--~~~~----------------------~~~-----~~~~~~~~~~~~~~~~~~~ 77 (203)
..++|+++|+.++|||||+.+|+.. .... ..+ ...+.+.......+.....
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 4589999999999999999998651 1110 000 1112223333344455567
Q ss_pred EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHH---H---HHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCc--c
Q 048709 78 KAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQS---F---DHVARGVEELRAHADSSIR-IILIGNKSDLVD--M 148 (203)
Q Consensus 78 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~--~ 148 (203)
.+.|+||||+..|.......+..+|++++|+|+....- + .+..+.+..+.. .++| +++++||+|... .
T Consensus 86 ~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi~~iiv~vNKmD~~~~~~ 162 (446)
T PTZ00141 86 YFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGVKQMIVCINKMDDKTVNY 162 (446)
T ss_pred EEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCCCeEEEEEEccccccchh
Confidence 88999999999988777777899999999999986420 0 122232233322 3555 679999999532 1
Q ss_pred cCC----CHHHHHHHHHHc-----CCeEEEEecCCCCCHHH
Q 048709 149 WAV----SAEDVVEFAEDQ-----GLFFSEASALNGDNVDT 180 (203)
Q Consensus 149 ~~~----~~~~~~~~~~~~-----~~~~~~~sa~~~~~i~~ 180 (203)
.+. ..+++.+++... .++++++|+.+|.|+.+
T Consensus 163 ~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 163 SQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 111 123444444433 36799999999999863
No 256
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=1.8e-15 Score=120.73 Aligned_cols=163 Identities=20% Similarity=0.217 Sum_probs=118.1
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCC---------------CccCCCCCcceeeEEEEEEE-CCEEEEEEEEeCCCc
Q 048709 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNE---------------FCFDSKSTIGVEFQTRTVTI-NSKIIKAQIWDTAGQ 87 (203)
Q Consensus 24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~ 87 (203)
+.++-.++.|+-+-.-|||||..+|+... ...+.....++.-.+..+.+ ++..+.++++||||+
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence 34667899999999999999999985421 11122234444444444443 456688999999999
Q ss_pred hhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHH----HHHHHHc
Q 048709 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDV----VEFAEDQ 163 (203)
Q Consensus 88 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~----~~~~~~~ 163 (203)
..|..-....+.-|+++++|+|++..-.-+.+..++..+. .+..+|.|+||+|++.. ..+++ .+.....
T Consensus 136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~a---dpe~V~~q~~~lF~~~ 208 (650)
T KOG0462|consen 136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSA---DPERVENQLFELFDIP 208 (650)
T ss_pred ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCC---CHHHHHHHHHHHhcCC
Confidence 9988777777889999999999998654444444444333 46789999999999864 23333 3333344
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q 048709 164 GLFFSEASALNGDNVDTAFFRLLQEIYALS 193 (203)
Q Consensus 164 ~~~~~~~sa~~~~~i~~~~~~i~~~~~~~~ 193 (203)
..+++.+||++|.|+.+++++|++.+....
T Consensus 209 ~~~~i~vSAK~G~~v~~lL~AII~rVPpP~ 238 (650)
T KOG0462|consen 209 PAEVIYVSAKTGLNVEELLEAIIRRVPPPK 238 (650)
T ss_pred ccceEEEEeccCccHHHHHHHHHhhCCCCC
Confidence 457999999999999999999999987643
No 257
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.66 E-value=4.9e-16 Score=110.09 Aligned_cols=124 Identities=23% Similarity=0.328 Sum_probs=74.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEE-CCEEEEEEEEeCCCchhhhhhhHh---hhcCCcEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTI-NSKIIKAQIWDTAGQERYRAVTSA---YYRGALGA 104 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~---~~~~~d~~ 104 (203)
-.|+++|+.|||||+|+..|..+.......+. .... ...+ +.....+.++|+||+.+.+..... +...+.++
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~---e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM---ENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---S---SEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc---cCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 46899999999999999999998554333111 1111 1112 223346789999999887764333 47889999
Q ss_pred EEEEeCCC-HHHHHHHHHHHHHHHhh-c--CCCCcEEEEEeCCCCCcccCCCHHHHHH
Q 048709 105 VVVYDITK-RQSFDHVARGVEELRAH-A--DSSIRIILIGNKSDLVDMWAVSAEDVVE 158 (203)
Q Consensus 105 i~v~d~~~-~~s~~~~~~~~~~~~~~-~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~ 158 (203)
|||+|.+. ......+.+++..+... . ...+|+++++||.|+.. ..+...++.
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~--A~~~~~Ik~ 135 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT--AKPPKKIKK 135 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-----HHHHHH
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc--cCCHHHHHH
Confidence 99999975 44555554444443322 2 36799999999999976 334444433
No 258
>PLN03127 Elongation factor Tu; Provisional
Probab=99.65 E-value=5.9e-15 Score=119.39 Aligned_cols=162 Identities=17% Similarity=0.121 Sum_probs=99.8
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcC------CCccCC--------CCCcceeeEEEEEEECCEEEEEEEEeCCCchhh
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKN------EFCFDS--------KSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY 90 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 90 (203)
.-..++|+++|..++|||||+++|.+. .....+ ....+.+.......+.....++.++||||+..|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 345699999999999999999999732 110000 011223333344445444567899999998877
Q ss_pred hhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCcccCCC---HHHHHHHHHHc---
Q 048709 91 RAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR-IILIGNKSDLVDMWAVS---AEDVVEFAEDQ--- 163 (203)
Q Consensus 91 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~--- 163 (203)
-.....-+..+|++++|+|+.+...-+ ....+..+.. .++| +++++||+|+.+..+.. .+++.++....
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~ 213 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFP 213 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 665555567799999999998643211 1222233322 4678 57889999997532211 12333444332
Q ss_pred --CCeEEEEecC---CCCC-------HHHHHHHHHHHHH
Q 048709 164 --GLFFSEASAL---NGDN-------VDTAFFRLLQEIY 190 (203)
Q Consensus 164 --~~~~~~~sa~---~~~~-------i~~~~~~i~~~~~ 190 (203)
.++++.+|+. +|.| +.++++.+.+.+.
T Consensus 214 ~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 214 GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 3678888875 4555 6777777776654
No 259
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.65 E-value=5.1e-15 Score=119.66 Aligned_cols=165 Identities=15% Similarity=0.117 Sum_probs=103.9
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCc---cCCCCCcc--eeeEEE---------------EEE--------EC--C
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFC---FDSKSTIG--VEFQTR---------------TVT--------IN--S 74 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~---~~~~~~~~--~~~~~~---------------~~~--------~~--~ 74 (203)
....++|+++|....|||||+.+|++.... .+..+..+ ..+... ... ++ +
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 355799999999999999999999874321 11111111 111100 000 00 0
Q ss_pred ----EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC
Q 048709 75 ----KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA 150 (203)
Q Consensus 75 ----~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 150 (203)
....+.++|+||++.|-.....-+..+|++++|+|+.++....+..+.+..+... .-.++++++||+|+.+...
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~l--gi~~iIVvlNKiDlv~~~~ 188 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIM--KLKHIIILQNKIDLVKEAQ 188 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHc--CCCcEEEEEecccccCHHH
Confidence 0236889999999988776666788999999999998741111222222222222 1236899999999875211
Q ss_pred --CCHHHHHHHHHH---cCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 048709 151 --VSAEDVVEFAED---QGLFFSEASALNGDNVDTAFFRLLQEIYA 191 (203)
Q Consensus 151 --~~~~~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~i~~~~~~ 191 (203)
...+++.++... ...+++++||++|.|++.+++.|.+.+..
T Consensus 189 ~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 189 AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 112344444332 35789999999999999999988875543
No 260
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.63 E-value=2.8e-15 Score=97.54 Aligned_cols=136 Identities=20% Similarity=0.197 Sum_probs=95.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCch----hhhhhhHhhhcCCcEEE
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE----RYRAVTSAYYRGALGAV 105 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----~~~~~~~~~~~~~d~~i 105 (203)
||+++|..|+|||||+++|.+.... +..| ..++++... .+||||.- .+.+-.-.....+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKT-------QAve~~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKT-------QAVEFNDKG----DIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh--hccc-------ceeeccCcc----ccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 7999999999999999999886642 2222 223332222 57999942 23333344567899999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHH
Q 048709 106 VVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL-FFSEASALNGDNVDTAFFR 184 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~ 184 (203)
+|-.++++++. +-..+... -..|+|-|++|.|++++ ...+..++++..-|. ++|.+|+.++.|+++++..
T Consensus 70 ~v~~and~~s~-----f~p~f~~~--~~k~vIgvVTK~DLaed--~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~ 140 (148)
T COG4917 70 YVHAANDPESR-----FPPGFLDI--GVKKVIGVVTKADLAED--ADISLVKRWLREAGAEPIFETSAVDNQGVEELVDY 140 (148)
T ss_pred eeecccCcccc-----CCcccccc--cccceEEEEecccccch--HhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence 99999997652 11112222 23459999999999973 345677888888875 6999999999999999987
Q ss_pred HHH
Q 048709 185 LLQ 187 (203)
Q Consensus 185 i~~ 187 (203)
+..
T Consensus 141 L~~ 143 (148)
T COG4917 141 LAS 143 (148)
T ss_pred HHh
Confidence 754
No 261
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.63 E-value=8.5e-15 Score=115.21 Aligned_cols=162 Identities=19% Similarity=0.209 Sum_probs=118.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcC---------------CCccCCCCCcceeeEEEEEEE---CCEEEEEEEEeCCCc
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKN---------------EFCFDSKSTIGVEFQTRTVTI---NSKIIKAQIWDTAGQ 87 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~---------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~g~ 87 (203)
.+-.+.+++-+-.-|||||..+|+.. ..+.+..+..++.-...++.+ +|..+.++++||||+
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 34567888999999999999998542 122333344555555555554 567899999999998
Q ss_pred hhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHH-HHHHcCC-
Q 048709 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVE-FAEDQGL- 165 (203)
Q Consensus 88 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~~~~~~- 165 (203)
..|.--...-+..|-++++|+|++..-.-+.+...+..+.+ +.-++.|+||+|++.. ..+.+++ +..-.|+
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~A---dpervk~eIe~~iGid 159 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAA---DPERVKQEIEDIIGID 159 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCC---CHHHHHHHHHHHhCCC
Confidence 88765445557789999999999987655555555555543 6779999999999863 3344433 3344555
Q ss_pred --eEEEEecCCCCCHHHHHHHHHHHHHHhhc
Q 048709 166 --FFSEASALNGDNVDTAFFRLLQEIYALSK 194 (203)
Q Consensus 166 --~~~~~sa~~~~~i~~~~~~i~~~~~~~~~ 194 (203)
..+.+|||+|.||+++++.|+++++....
T Consensus 160 ~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g 190 (603)
T COG0481 160 ASDAVLVSAKTGIGIEDVLEAIVEKIPPPKG 190 (603)
T ss_pred cchheeEecccCCCHHHHHHHHHhhCCCCCC
Confidence 47889999999999999999999877543
No 262
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.63 E-value=2.7e-14 Score=113.71 Aligned_cols=83 Identities=18% Similarity=0.284 Sum_probs=58.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEE---------------------C-CEEEEEEEEeCCC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTI---------------------N-SKIIKAQIWDTAG 86 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~l~D~~g 86 (203)
++|+++|.|++|||||+|+|++........+..+.++......+ + .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999988776544344444444433221 1 1236789999999
Q ss_pred ch----hhhhhhHhh---hcCCcEEEEEEeCC
Q 048709 87 QE----RYRAVTSAY---YRGALGAVVVYDIT 111 (203)
Q Consensus 87 ~~----~~~~~~~~~---~~~~d~~i~v~d~~ 111 (203)
.. ....+-..+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 42 222333334 89999999999996
No 263
>PRK12739 elongation factor G; Reviewed
Probab=99.62 E-value=1.9e-14 Score=122.62 Aligned_cols=117 Identities=16% Similarity=0.144 Sum_probs=80.2
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcC--CCc----------------cCCCCCcceeeEEEEEEECCEEEEEEEEeCCC
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKN--EFC----------------FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG 86 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 86 (203)
.+...+|+++|.+++|||||+++|+.. ... .+..+..+.+.....+..+ ..+++++||||
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG 82 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--GHRINIIDTPG 82 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC--CEEEEEEcCCC
Confidence 345689999999999999999999742 110 0011223333333344443 46789999999
Q ss_pred chhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709 87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147 (203)
Q Consensus 87 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 147 (203)
...+.......+..+|++++|+|+........ ...+..+.. .++|+++++||+|+..
T Consensus 83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~---~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK---YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 88887777788999999999999987533222 223333332 4689999999999864
No 264
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.61 E-value=1.3e-14 Score=110.54 Aligned_cols=136 Identities=10% Similarity=0.044 Sum_probs=79.1
Q ss_pred cccccCCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCC-CCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhh
Q 048709 15 QQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSK-STIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV 93 (203)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 93 (203)
.+...+.+....+.++|+++|.+|+||||++|+|++.+...... ...+..........+ +.++.+|||||.......
T Consensus 25 ~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~ 102 (313)
T TIGR00991 25 LELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYI 102 (313)
T ss_pred HHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHH
Confidence 34444555556778999999999999999999999987543221 222222222333334 467899999996543221
Q ss_pred h-------Hhhh--cCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCcccCCC
Q 048709 94 T-------SAYY--RGALGAVVVYDITKRQSFDHVARGVEELRAHAD--SSIRIILIGNKSDLVDMWAVS 152 (203)
Q Consensus 94 ~-------~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~ 152 (203)
. ..++ ...|+++||..++.......-...+..+....+ --.+.|+++|+.|...++..+
T Consensus 103 ~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~ 172 (313)
T TIGR00991 103 NDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLE 172 (313)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCC
Confidence 1 1122 268999999665431110011122333333322 124589999999976433333
No 265
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.61 E-value=1.7e-14 Score=123.00 Aligned_cols=118 Identities=17% Similarity=0.081 Sum_probs=81.0
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCcc-----CC-------------CCCcceeeEEEEEEECCEEEEEEEEeCC
Q 048709 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCF-----DS-------------KSTIGVEFQTRTVTINSKIIKAQIWDTA 85 (203)
Q Consensus 24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 85 (203)
..+.-.+|+|+|.+++|||||+++|+...-.. .. .+..+.+.....+.++ ..++.+||||
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--~~~i~liDTP 83 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--GHRINIIDTP 83 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--CeEEEEEECC
Confidence 34456799999999999999999997421100 00 1122222333333343 4678999999
Q ss_pred CchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147 (203)
Q Consensus 86 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 147 (203)
|...+.......++.+|++++|+|+.+....... ..+..+.. .++|+++++||+|+..
T Consensus 84 G~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 84 GHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTG 141 (689)
T ss_pred CCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence 9988877778889999999999999875443322 23333332 4689999999999875
No 266
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.61 E-value=4.7e-15 Score=117.26 Aligned_cols=175 Identities=15% Similarity=0.121 Sum_probs=121.3
Q ss_pred cccccCCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh-----
Q 048709 15 QQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER----- 89 (203)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----- 89 (203)
++....+|...++...++|+|.|++|||||+|.+...+....+.++++.....- .++.+...|+++||||.-.
T Consensus 155 rqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vG--H~dykYlrwQViDTPGILD~plEd 232 (620)
T KOG1490|consen 155 RQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVG--HLDYKYLRWQVIDTPGILDRPEED 232 (620)
T ss_pred HHHHhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhh--hhhhheeeeeecCCccccCcchhh
Confidence 455566777788889999999999999999999988877665545543333222 3455667899999999321
Q ss_pred hh----hhhHhhhcCCcEEEEEEeCCCHH--HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHH--HHHHHHH
Q 048709 90 YR----AVTSAYYRGALGAVVVYDITKRQ--SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAE--DVVEFAE 161 (203)
Q Consensus 90 ~~----~~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~--~~~~~~~ 161 (203)
.+ ....+..+--.+|+|++|++... |.+.-..++..+.... .+.|+|+|+||+|......+..+ ++.+...
T Consensus 233 rN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~ 311 (620)
T KOG1490|consen 233 RNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLNKIDAMRPEDLDQKNQELLQTII 311 (620)
T ss_pred hhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEeecccccCccccCHHHHHHHHHHH
Confidence 11 11122334445699999999854 4444445566665544 67899999999998765444432 3444444
Q ss_pred H-cCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709 162 D-QGLFFSEASALNGDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 162 ~-~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~ 192 (203)
. .+++++++|+.+..|+-++.....+.++..
T Consensus 312 ~~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~ 343 (620)
T KOG1490|consen 312 DDGNVKVVQTSCVQEEGVMDVRTTACEALLAA 343 (620)
T ss_pred hccCceEEEecccchhceeeHHHHHHHHHHHH
Confidence 4 448999999999999999888888777653
No 267
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=9.1e-14 Score=111.13 Aligned_cols=154 Identities=21% Similarity=0.193 Sum_probs=112.8
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
+++.-|-++|...-|||||+..|-+..+.....-..+...--..+..+ .+-.++|.||||+..|..|...-..-.|+++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 356778899999999999999998877654332333333333333333 2256789999999999999988888999999
Q ss_pred EEEeCCCH---HHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcC---------CeEEEEecC
Q 048709 106 VVYDITKR---QSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQG---------LFFSEASAL 173 (203)
Q Consensus 106 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~sa~ 173 (203)
+|+.++|. ++.+.+ ......++|+++.+||+|.++ .+.+.+.+-+..++ +.++++||+
T Consensus 230 LVVAadDGVmpQT~EaI-------khAk~A~VpiVvAinKiDkp~---a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl 299 (683)
T KOG1145|consen 230 LVVAADDGVMPQTLEAI-------KHAKSANVPIVVAINKIDKPG---ANPEKVKRELLSQGIVVEDLGGDVQVIPISAL 299 (683)
T ss_pred EEEEccCCccHhHHHHH-------HHHHhcCCCEEEEEeccCCCC---CCHHHHHHHHHHcCccHHHcCCceeEEEeecc
Confidence 99999983 443332 223336899999999999875 35566666665554 368999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 048709 174 NGDNVDTAFFRLLQEIY 190 (203)
Q Consensus 174 ~~~~i~~~~~~i~~~~~ 190 (203)
+|.|++.+.+.++-...
T Consensus 300 ~g~nl~~L~eaill~Ae 316 (683)
T KOG1145|consen 300 TGENLDLLEEAILLLAE 316 (683)
T ss_pred cCCChHHHHHHHHHHHH
Confidence 99999988877765443
No 268
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.60 E-value=2.4e-14 Score=117.92 Aligned_cols=118 Identities=19% Similarity=0.173 Sum_probs=80.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhc--CCCccC-------------C-----CCCcceeeEEEEEEECCEEEEEEEEeCC
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTK--NEFCFD-------------S-----KSTIGVEFQTRTVTINSKIIKAQIWDTA 85 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~--~~~~~~-------------~-----~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 85 (203)
....+|+|+|.+++|||||+++|+. +.+... . ...-+.........++....++++||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4568999999999999999999853 211100 0 0111233334444455556789999999
Q ss_pred CchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147 (203)
Q Consensus 86 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 147 (203)
|+..|.......+..+|++++|+|+.+... .....++..+.. .++|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence 998887766778899999999999987421 122333333322 4789999999999864
No 269
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=2.4e-14 Score=101.81 Aligned_cols=152 Identities=23% Similarity=0.289 Sum_probs=100.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhc---CCcEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYR---GALGAV 105 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~---~~d~~i 105 (203)
-.|+++|+.+||||+|+.+|..+...... +..+.....+.+... .+.++|.||+++.+.-...++. .+.+++
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv---tSiepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTV---TSIEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCee---eeeccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 57999999999999999999888543322 112223333333322 2789999999988877777776 788999
Q ss_pred EEEeCCC-HHHHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCCcccCCCHHHHHHHHH--------------------
Q 048709 106 VVYDITK-RQSFDHVARGVEELRAHA---DSSIRIILIGNKSDLVDMWAVSAEDVVEFAE-------------------- 161 (203)
Q Consensus 106 ~v~d~~~-~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-------------------- 161 (203)
||+|... ........+++..+.-.+ ...+|++++.||.|+.-. .+.+.+++...
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA--kt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed 191 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA--KTAEKIRQQLEKEIHKLRESRSALRSISDED 191 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc--CcHHHHHHHHHHHHHHHHHHHhhhhcccccc
Confidence 9999764 233444444444443333 477999999999998642 11111111110
Q ss_pred --------------------HcCCeEEEEecCCCCCHHHHHHHHHHH
Q 048709 162 --------------------DQGLFFSEASALNGDNVDTAFFRLLQE 188 (203)
Q Consensus 162 --------------------~~~~~~~~~sa~~~~~i~~~~~~i~~~ 188 (203)
...+.|.++|++++ +++++-+||.+.
T Consensus 192 ~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 192 IAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred ccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 12245788899888 899999998765
No 270
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.59 E-value=5.2e-14 Score=109.49 Aligned_cols=118 Identities=16% Similarity=0.196 Sum_probs=88.8
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCH----------HHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCC
Q 048709 76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKR----------QSFDHVARGVEELRAHAD-SSIRIILIGNKSD 144 (203)
Q Consensus 76 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D 144 (203)
.+.+.+||++|+...+..|..++.++++++||+|.++. ..+.+....+..+..... .++|+++++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 46789999999999999999999999999999999873 345555555555555433 6899999999999
Q ss_pred CCcc----------------cCCCHHHHHHHHHH----------cCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q 048709 145 LVDM----------------WAVSAEDVVEFAED----------QGLFFSEASALNGDNVDTAFFRLLQEIYALS 193 (203)
Q Consensus 145 ~~~~----------------~~~~~~~~~~~~~~----------~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~~ 193 (203)
+... .....+++..|... ..+....++|.+..+++.+|+.+.+.+....
T Consensus 240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 6431 12345566555432 2345677899999999999999988887643
No 271
>PRK00007 elongation factor G; Reviewed
Probab=99.58 E-value=1e-13 Score=118.16 Aligned_cols=117 Identities=16% Similarity=0.103 Sum_probs=78.5
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhc--CCCc-c--C-------------CCCCcceeeEEEEEEECCEEEEEEEEeCCC
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTK--NEFC-F--D-------------SKSTIGVEFQTRTVTINSKIIKAQIWDTAG 86 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~--~~~~-~--~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 86 (203)
.+.-.+|+++|.+++|||||+++|+. +... . . ..+..+.+.....+... ..+++++||||
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--~~~~~liDTPG 84 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--DHRINIIDTPG 84 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--CeEEEEEeCCC
Confidence 44567999999999999999999973 2111 0 0 11223333333334443 45789999999
Q ss_pred chhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709 87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147 (203)
Q Consensus 87 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 147 (203)
...|.......+..+|++++|+|+...-..... ..+..+.. .++|+++++||+|+.+
T Consensus 85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~-~~~~~~~~---~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSE-TVWRQADK---YKVPRIAFVNKMDRTG 141 (693)
T ss_pred cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence 887766566678899999999999865333322 22233333 4688999999999863
No 272
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.58 E-value=2.2e-14 Score=107.59 Aligned_cols=131 Identities=14% Similarity=0.167 Sum_probs=78.6
Q ss_pred ccccccCCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCC-CCcceeeEEEEEEECCEEEEEEEEeCCCchhhh-
Q 048709 14 HQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSK-STIGVEFQTRTVTINSKIIKAQIWDTAGQERYR- 91 (203)
Q Consensus 14 ~~~~~~~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~- 91 (203)
+.++..+.....+..++|+|+|.+|+|||||+|+|++........ ...+..........++ ..+.+|||||.....
T Consensus 17 ~~~~~~~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~ 94 (249)
T cd01853 17 ALELEAKGKEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVM 94 (249)
T ss_pred HHHHHHHhhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchh
Confidence 344445555566788999999999999999999999987543321 2222333333333344 568999999954331
Q ss_pred -h-h-------hHhhhc--CCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhcCC--CCcEEEEEeCCCCCc
Q 048709 92 -A-V-------TSAYYR--GALGAVVVYDITKRQ-SFDHVARGVEELRAHADS--SIRIILIGNKSDLVD 147 (203)
Q Consensus 92 -~-~-------~~~~~~--~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~ 147 (203)
. . ...++. ..|++++|..++... ...+ ...+..+....+. -.++++|+||+|...
T Consensus 95 ~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 95 DQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred hHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 0 1 122333 568888887665421 1121 1333333333321 145899999999853
No 273
>PRK12740 elongation factor G; Reviewed
Probab=99.56 E-value=1.5e-13 Score=117.18 Aligned_cols=108 Identities=19% Similarity=0.122 Sum_probs=73.5
Q ss_pred EcCCCCcHHHHHHHHhcCCCc--------c----------CCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhH
Q 048709 34 IGDSAVGKSQILSRFTKNEFC--------F----------DSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTS 95 (203)
Q Consensus 34 vG~~~sGKStli~~l~~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 95 (203)
+|++++|||||+++|+...-. . +..+..+.......+.+. .+.+++|||||...+.....
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~--~~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK--GHKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC--CEEEEEEECCCcHHHHHHHH
Confidence 699999999999999542110 0 001222233333334443 46789999999988877777
Q ss_pred hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709 96 AYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147 (203)
Q Consensus 96 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 147 (203)
.++..+|++++|+|++........ ..+..+.. .++|+++++||+|...
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~---~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK---YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence 889999999999999886544433 22233322 4789999999999863
No 274
>PRK13768 GTPase; Provisional
Probab=99.55 E-value=6.2e-14 Score=105.77 Aligned_cols=111 Identities=18% Similarity=0.187 Sum_probs=69.3
Q ss_pred EEEEEeCCCchhhh---hhhHhh---hcC--CcEEEEEEeCCCHHHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCcc
Q 048709 78 KAQIWDTAGQERYR---AVTSAY---YRG--ALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVDM 148 (203)
Q Consensus 78 ~~~l~D~~g~~~~~---~~~~~~---~~~--~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 148 (203)
.+.+||+||+.... .....+ +.. .+++++|+|+......... ..++..+......+.|+++|+||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 68999999975532 222222 333 8899999999764332222 11111211111247899999999998763
Q ss_pred cCCCHHHHHHH----------------------------HHHcC--CeEEEEecCCCCCHHHHHHHHHHHHH
Q 048709 149 WAVSAEDVVEF----------------------------AEDQG--LFFSEASALNGDNVDTAFFRLLQEIY 190 (203)
Q Consensus 149 ~~~~~~~~~~~----------------------------~~~~~--~~~~~~sa~~~~~i~~~~~~i~~~~~ 190 (203)
.+ .++..++ ....+ .+++++|++++.|+++++++|.+.+.
T Consensus 178 ~~--~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 178 EE--LERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred hh--HHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 22 1222111 12223 57899999999999999999988763
No 275
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.55 E-value=6.1e-14 Score=103.49 Aligned_cols=168 Identities=17% Similarity=0.195 Sum_probs=100.6
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccC-------CCCCcceeeEEEEEEE-----------------CC-----
Q 048709 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFD-------SKSTIGVEFQTRTVTI-----------------NS----- 74 (203)
Q Consensus 24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~-------~~~~~~~~~~~~~~~~-----------------~~----- 74 (203)
...++..|+|+|..|||||||+.+|...-.... .+|..-..++...+.+ +|
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts 94 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS 94 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence 456679999999999999999999865322111 1111111111111111 00
Q ss_pred -------------------EEEEEEEEeCCCchh-h-----hhhhHhhh--cCCcEEEEEEeCCC---HHHHHHHHHHHH
Q 048709 75 -------------------KIIKAQIWDTAGQER-Y-----RAVTSAYY--RGALGAVVVYDITK---RQSFDHVARGVE 124 (203)
Q Consensus 75 -------------------~~~~~~l~D~~g~~~-~-----~~~~~~~~--~~~d~~i~v~d~~~---~~s~~~~~~~~~ 124 (203)
..+++.++||||+.. | ..+...-+ ...-++++|+|... +.+| +..++.
T Consensus 95 LNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tF--MSNMlY 172 (366)
T KOG1532|consen 95 LNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTF--MSNMLY 172 (366)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhH--HHHHHH
Confidence 135689999999632 2 22222222 23356788888654 4444 335555
Q ss_pred HHHhhcCCCCcEEEEEeCCCCCccc-----CCCHHHHHHHHH---------------------HcCCeEEEEecCCCCCH
Q 048709 125 ELRAHADSSIRIILIGNKSDLVDMW-----AVSAEDVVEFAE---------------------DQGLFFSEASALNGDNV 178 (203)
Q Consensus 125 ~~~~~~~~~~p~ivv~nK~D~~~~~-----~~~~~~~~~~~~---------------------~~~~~~~~~sa~~~~~i 178 (203)
.+......+.|+|++.||+|+.+.. -...+..++... ..++..+-+|+.+|.|.
T Consensus 173 AcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ 252 (366)
T KOG1532|consen 173 ACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGF 252 (366)
T ss_pred HHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcH
Confidence 5556666799999999999997631 111111111111 12356888999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 048709 179 DTAFFRLLQEIYALS 193 (203)
Q Consensus 179 ~~~~~~i~~~~~~~~ 193 (203)
+++|..+.+.+-++.
T Consensus 253 ddf~~av~~~vdEy~ 267 (366)
T KOG1532|consen 253 DDFFTAVDESVDEYE 267 (366)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888776643
No 276
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.55 E-value=2.5e-13 Score=106.52 Aligned_cols=117 Identities=15% Similarity=0.185 Sum_probs=86.7
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCH----------HHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCC
Q 048709 77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKR----------QSFDHVARGVEELRAHAD-SSIRIILIGNKSDL 145 (203)
Q Consensus 77 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~ 145 (203)
..+.+||.+|+...+..|..++.++++++||+|+++. ..+.+....+..+..... .++|+++++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 5678999999999999999999999999999999973 345555555666555433 67999999999998
Q ss_pred Ccc---------------cCCCHHHHHHHHHH-----------cCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q 048709 146 VDM---------------WAVSAEDVVEFAED-----------QGLFFSEASALNGDNVDTAFFRLLQEIYALS 193 (203)
Q Consensus 146 ~~~---------------~~~~~~~~~~~~~~-----------~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~~ 193 (203)
... .....+.+..|... ..+..+.++|.+-.++..+|+.+.+.+....
T Consensus 264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~ 337 (342)
T smart00275 264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN 337 (342)
T ss_pred HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence 531 01244555554432 1245677889999999999999888877643
No 277
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.54 E-value=9.9e-14 Score=102.17 Aligned_cols=160 Identities=13% Similarity=0.152 Sum_probs=92.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCC--CCcceeeEEEEEEECCEEEEEEEEeCCCchhhh--------hhhH---
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSK--STIGVEFQTRTVTINSKIIKAQIWDTAGQERYR--------AVTS--- 95 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------~~~~--- 95 (203)
++|+|+|.+||||||++|.|++........ ...+..........++ ..+.++||||..... .+..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999988654432 2233344444456666 456899999932211 1111
Q ss_pred hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCC--CCcEEEEEeCCCCCcccCC----C---HHHHHHHHHHcCCe
Q 048709 96 AYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS--SIRIILIGNKSDLVDMWAV----S---AEDVVEFAEDQGLF 166 (203)
Q Consensus 96 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~~~----~---~~~~~~~~~~~~~~ 166 (203)
....+.|++++|+.+.... ..+ ...+..+....+. -.-++||+|..|...+... . ...+.++....+-.
T Consensus 79 ~~~~g~ha~llVi~~~r~t-~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRFT-EED-REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETTB-S-HHH-HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecCcch-HHH-HHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 2245789999999998432 111 1222333333321 1348899999987654321 0 12345566677778
Q ss_pred EEEEecC------CCCCHHHHHHHHHHHHHHh
Q 048709 167 FSEASAL------NGDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 167 ~~~~sa~------~~~~i~~~~~~i~~~~~~~ 192 (203)
+..++.+ ....+.++|+.|-+.+.+-
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 8877776 2345777776666665554
No 278
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=8.3e-14 Score=108.28 Aligned_cols=152 Identities=22% Similarity=0.250 Sum_probs=98.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC--CC----------------------ccCCC-----CCcceeeEEEEEEECCEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKN--EF----------------------CFDSK-----STIGVEFQTRTVTINSKII 77 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~--~~----------------------~~~~~-----~~~~~~~~~~~~~~~~~~~ 77 (203)
..++++|+|+..+|||||+-+|+.. .+ ....+ +.-+.+.......++...+
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~ 85 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY 85 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence 4599999999999999999998542 00 01111 1223344444444555566
Q ss_pred EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHH---HH---HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCC
Q 048709 78 KAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQ---SF---DHVARGVEELRAHADSSIRIILIGNKSDLVDMWAV 151 (203)
Q Consensus 78 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 151 (203)
.+.++|+||+..|-...-.-+..+|+.|+|+|+...+ .| .+.++- ..+.+..+ -..+|+++||+|..+.++.
T Consensus 86 ~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH-~~La~tlG-i~~lIVavNKMD~v~wde~ 163 (428)
T COG5256 86 NFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREH-AFLARTLG-IKQLIVAVNKMDLVSWDEE 163 (428)
T ss_pred eEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHH-HHHHHhcC-CceEEEEEEcccccccCHH
Confidence 8999999998887776666788999999999998753 11 111111 11222222 2348999999999875444
Q ss_pred CHHHHHHH----HHHcC-----CeEEEEecCCCCCHHH
Q 048709 152 SAEDVVEF----AEDQG-----LFFSEASALNGDNVDT 180 (203)
Q Consensus 152 ~~~~~~~~----~~~~~-----~~~~~~sa~~~~~i~~ 180 (203)
.++++..- ....+ ++|+++|+..|.|+.+
T Consensus 164 rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 164 RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 44544433 33333 5699999999998764
No 279
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.53 E-value=9.1e-15 Score=114.21 Aligned_cols=175 Identities=11% Similarity=0.099 Sum_probs=88.6
Q ss_pred ccccccCCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCC--cceeeEEEEEEECCEEEEEEEEeCCCchhh
Q 048709 14 HQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFC-FDSKST--IGVEFQTRTVTINSKIIKAQIWDTAGQERY 90 (203)
Q Consensus 14 ~~~~~~~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 90 (203)
.+.+...+......+++|+|+|.+|+|||||||+|.|-.-. +...++ ..++.....+...... .+.+||.||....
T Consensus 21 ~s~i~~~l~~~~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~p-nv~lWDlPG~gt~ 99 (376)
T PF05049_consen 21 VSKIREALKDIDNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFP-NVTLWDLPGIGTP 99 (376)
T ss_dssp HHHHHHHHHHHHH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-T-TEEEEEE--GGGS
T ss_pred HHHHHHHHHHhhcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCC-CCeEEeCCCCCCC
Confidence 33344444444456799999999999999999999774322 122121 1112222233222211 4789999996544
Q ss_pred hhhhHhh-----hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC-------cccCCCH----H
Q 048709 91 RAVTSAY-----YRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV-------DMWAVSA----E 154 (203)
Q Consensus 91 ~~~~~~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-------~~~~~~~----~ 154 (203)
......| +...|.+|++.+-.=.+.-- .+...+.+ .++|+++|.||+|.. .++.... +
T Consensus 100 ~f~~~~Yl~~~~~~~yD~fiii~s~rf~~ndv---~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~ 173 (376)
T PF05049_consen 100 NFPPEEYLKEVKFYRYDFFIIISSERFTENDV---QLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQ 173 (376)
T ss_dssp S--HHHHHHHTTGGG-SEEEEEESSS--HHHH---HHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHH
T ss_pred CCCHHHHHHHccccccCEEEEEeCCCCchhhH---HHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHH
Confidence 3333444 45678888777654332222 22233333 478899999999961 1112222 2
Q ss_pred HHHHHHH----HcCC---eEEEEecCCC--CCHHHHHHHHHHHHHHhhcc
Q 048709 155 DVVEFAE----DQGL---FFSEASALNG--DNVDTAFFRLLQEIYALSKK 195 (203)
Q Consensus 155 ~~~~~~~----~~~~---~~~~~sa~~~--~~i~~~~~~i~~~~~~~~~~ 195 (203)
++++.+. ..++ ++|.+|+.+- ..+..+.+.+.+.+...++.
T Consensus 174 ~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~ 223 (376)
T PF05049_consen 174 EIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRH 223 (376)
T ss_dssp HHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHH
T ss_pred HHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHH
Confidence 3333332 2343 5888998864 56888888888877766553
No 280
>PTZ00258 GTP-binding protein; Provisional
Probab=99.53 E-value=4.7e-13 Score=105.72 Aligned_cols=88 Identities=18% Similarity=0.164 Sum_probs=64.6
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEE---------------EEEEEEeCCCch
Q 048709 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKI---------------IKAQIWDTAGQE 88 (203)
Q Consensus 24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~D~~g~~ 88 (203)
.....++|+++|.||+|||||+|+|++........|.++.++....+.+.+.. .++.++|+||..
T Consensus 17 ~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 17 RPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred cCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 34567899999999999999999999887766655666666666666554322 358999999943
Q ss_pred h-------hhhhhHhhhcCCcEEEEEEeCC
Q 048709 89 R-------YRAVTSAYYRGALGAVVVYDIT 111 (203)
Q Consensus 89 ~-------~~~~~~~~~~~~d~~i~v~d~~ 111 (203)
. .....-..++.+|++++|+|..
T Consensus 97 ~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 97 KGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 2 1112233568899999999973
No 281
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.51 E-value=5.2e-13 Score=100.79 Aligned_cols=164 Identities=16% Similarity=0.280 Sum_probs=115.5
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC--CEEEEEEEEeCCCchhhhhhhHhhhcCC--
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN--SKIIKAQIWDTAGQERYRAVTSAYYRGA-- 101 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~~~~~~~~~~~~~~-- 101 (203)
+..-+|+|+|..|+||||||.+|.+.+ ......+..+....+.-+ +...++.+|-.-|.-.+..+....+...
T Consensus 50 psgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ 126 (473)
T KOG3905|consen 50 PSGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSL 126 (473)
T ss_pred CCCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCc
Confidence 355789999999999999999999876 233444444444333222 2234678898888766666555544333
Q ss_pred --cEEEEEEeCCCH-HHHHHHHHHHHHHHhh-------------------------------------------------
Q 048709 102 --LGAVVVYDITKR-QSFDHVARGVEELRAH------------------------------------------------- 129 (203)
Q Consensus 102 --d~~i~v~d~~~~-~s~~~~~~~~~~~~~~------------------------------------------------- 129 (203)
.++|++.|.+++ .-++.+..|...+...
T Consensus 127 aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de 206 (473)
T KOG3905|consen 127 AETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADE 206 (473)
T ss_pred cceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccc
Confidence 368899999998 4455567776554332
Q ss_pred ------------cCCCCcEEEEEeCCCCCc----ccC-------CCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709 130 ------------ADSSIRIILIGNKSDLVD----MWA-------VSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (203)
Q Consensus 130 ------------~~~~~p~ivv~nK~D~~~----~~~-------~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 186 (203)
...++|++||+||+|... ..+ .....++.||.++|..++.+|++...|++-+..+|+
T Consensus 207 ~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYiv 286 (473)
T KOG3905|consen 207 HVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIV 286 (473)
T ss_pred ccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHH
Confidence 113589999999999842 111 112356888999999999999999999999999999
Q ss_pred HHHHHh
Q 048709 187 QEIYAL 192 (203)
Q Consensus 187 ~~~~~~ 192 (203)
..++..
T Consensus 287 hr~yG~ 292 (473)
T KOG3905|consen 287 HRSYGF 292 (473)
T ss_pred HHhcCc
Confidence 988763
No 282
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.51 E-value=1e-12 Score=114.49 Aligned_cols=145 Identities=19% Similarity=0.239 Sum_probs=95.7
Q ss_pred CcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCE-----------E-----EEEEEEeCCCchhhhhhhHhhhcCCc
Q 048709 39 VGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSK-----------I-----IKAQIWDTAGQERYRAVTSAYYRGAL 102 (203)
Q Consensus 39 sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-----~~~~l~D~~g~~~~~~~~~~~~~~~d 102 (203)
++||||+.+|.+........-..+.+.-...++.+.. . -.+.+|||||++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 3499999999988775444333333333333333210 0 12789999999999888888888999
Q ss_pred EEEEEEeCCC---HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCC----------------HHHHH----HH
Q 048709 103 GAVVVYDITK---RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVS----------------AEDVV----EF 159 (203)
Q Consensus 103 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~----------------~~~~~----~~ 159 (203)
++++|+|+++ +++++.+. .+.. .++|+++++||+|+...+... .+++. +.
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v 624 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYEL 624 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999987 44544432 2222 367999999999986432210 01110 00
Q ss_pred ---HHHc---------------CCeEEEEecCCCCCHHHHHHHHHHHHH
Q 048709 160 ---AEDQ---------------GLFFSEASALNGDNVDTAFFRLLQEIY 190 (203)
Q Consensus 160 ---~~~~---------------~~~~~~~sa~~~~~i~~~~~~i~~~~~ 190 (203)
+... .++++++||++|.|+++++.+|.....
T Consensus 625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 1111 358999999999999999988765443
No 283
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.51 E-value=2e-13 Score=105.93 Aligned_cols=106 Identities=15% Similarity=0.061 Sum_probs=69.2
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC--CCH
Q 048709 76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA--VSA 153 (203)
Q Consensus 76 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~ 153 (203)
++.+.|+||+|...-. ......+|.+++|.+....+....+..- +. ...-++|+||+|+..... ...
T Consensus 148 g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k~g---i~-----E~aDIiVVNKaDl~~~~~a~~~~ 216 (332)
T PRK09435 148 GYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIKKG---IM-----ELADLIVINKADGDNKTAARRAA 216 (332)
T ss_pred CCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHHhh---hh-----hhhheEEeehhcccchhHHHHHH
Confidence 4678999999955322 2246679999999875555554433321 11 122389999999875321 122
Q ss_pred HHHHHHHHH-------cCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709 154 EDVVEFAED-------QGLFFSEASALNGDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 154 ~~~~~~~~~-------~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~ 192 (203)
.++...... +..+++.+||+++.|++++++.|.+.+..+
T Consensus 217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l 262 (332)
T PRK09435 217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAAL 262 (332)
T ss_pred HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 233333322 235899999999999999999999887644
No 284
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.49 E-value=1.2e-12 Score=95.40 Aligned_cols=102 Identities=15% Similarity=0.090 Sum_probs=63.9
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHH
Q 048709 77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDV 156 (203)
Q Consensus 77 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 156 (203)
....++++.|..-.....+ . -+|.++.|+|+.+.++... .....+. ..-++++||+|+........+.+
T Consensus 92 ~D~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~--~~~~qi~------~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPR--KGGPGIT------RSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhh--hhHhHhh------hccEEEEEhhhccccccccHHHH
Confidence 4566778887322111111 1 2577999999987655321 1111111 11289999999975322233344
Q ss_pred HHHHH--HcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 048709 157 VEFAE--DQGLFFSEASALNGDNVDTAFFRLLQEI 189 (203)
Q Consensus 157 ~~~~~--~~~~~~~~~sa~~~~~i~~~~~~i~~~~ 189 (203)
.+.++ ..+.+++++||++|.|++++++++.+.+
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 44444 3568899999999999999999998754
No 285
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.49 E-value=1.8e-13 Score=117.01 Aligned_cols=118 Identities=14% Similarity=0.148 Sum_probs=80.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcC---------------CCccC---CCCCcceeeEEEEEEECCEEEEEEEEeCCCc
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKN---------------EFCFD---SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~---------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 87 (203)
....+|+++|+.++|||||+++|+.. ++... ...|.........+.+++..+++++|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 45689999999999999999999742 11111 1112222222223345667788999999999
Q ss_pred hhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147 (203)
Q Consensus 88 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 147 (203)
..|.......+..+|++++|+|+......... ..+..+.. .+.|+++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~~~~~---~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLRQALK---ENVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHHHHHH---cCCCEEEEEEChhccc
Confidence 88887778889999999999999874222221 22222222 4678899999999853
No 286
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.46 E-value=2.4e-12 Score=103.75 Aligned_cols=171 Identities=19% Similarity=0.196 Sum_probs=126.3
Q ss_pred CCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhc
Q 048709 20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYR 99 (203)
Q Consensus 20 ~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~ 99 (203)
+........++..|+|+.++|||.+++++.++.+...+..+....+........+....+.+.|.+-. ....+...- .
T Consensus 417 ~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~ 494 (625)
T KOG1707|consen 417 KKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-A 494 (625)
T ss_pred ccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-c
Confidence 33445567899999999999999999999999988877677777777777777777777888888754 222222222 7
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC-CCHHHHHHHHHHcCCe-EEEEecCCCCC
Q 048709 100 GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA-VSAEDVVEFAEDQGLF-FSEASALNGDN 177 (203)
Q Consensus 100 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~-~~~~sa~~~~~ 177 (203)
.||+++++||.+++.++..+...++.-... ...|+++|++|+|+.+..+ ...+. .+++.+++++ .+.+|++....
T Consensus 495 ~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~s 571 (625)
T KOG1707|consen 495 ACDVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQP-DEFCRQLGLPPPIHISSKTLSS 571 (625)
T ss_pred eeeeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCCh-HHHHHhcCCCCCeeeccCCCCC
Confidence 799999999999999998887665543333 6899999999999976432 22233 7788899885 56677774333
Q ss_pred HHHHHHHHHHHHHHhhccc
Q 048709 178 VDTAFFRLLQEIYALSKKE 196 (203)
Q Consensus 178 i~~~~~~i~~~~~~~~~~~ 196 (203)
.++|..|..+.....-+.
T Consensus 572 -~~lf~kL~~~A~~Ph~~~ 589 (625)
T KOG1707|consen 572 -NELFIKLATMAQYPHIPR 589 (625)
T ss_pred -chHHHHHHHhhhCCCccc
Confidence 789998888877655333
No 287
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.46 E-value=6e-12 Score=98.47 Aligned_cols=83 Identities=20% Similarity=0.125 Sum_probs=60.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEE---------------EEEEEEeCCCchhh---
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKI---------------IKAQIWDTAGQERY--- 90 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~D~~g~~~~--- 90 (203)
++|+++|.|++|||||+|+|++........|.++.++....+.+.+.. .++.+.|+||...-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 799999999999999999999988655555666666666555554421 25899999994321
Q ss_pred ----hhhhHhhhcCCcEEEEEEeCC
Q 048709 91 ----RAVTSAYYRGALGAVVVYDIT 111 (203)
Q Consensus 91 ----~~~~~~~~~~~d~~i~v~d~~ 111 (203)
....-..++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 112223468999999999984
No 288
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.45 E-value=8.7e-12 Score=97.88 Aligned_cols=143 Identities=18% Similarity=0.155 Sum_probs=89.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcC----CCc------------cCCCCC---cceeeEE-----EEEE-ECCEEEEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKN----EFC------------FDSKST---IGVEFQT-----RTVT-INSKIIKAQ 80 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~----~~~------------~~~~~~---~~~~~~~-----~~~~-~~~~~~~~~ 80 (203)
...+.|+|+|+.++|||||+|+|.+. ... ++..+. +++++.. .++. .++....+.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 34699999999999999999999887 333 111121 2222222 2222 245567899
Q ss_pred EEeCCCchhh--------hh------h---------------hHhhhc-CCcEEEEEE-eCC--C--HHHHHHH-HHHHH
Q 048709 81 IWDTAGQERY--------RA------V---------------TSAYYR-GALGAVVVY-DIT--K--RQSFDHV-ARGVE 124 (203)
Q Consensus 81 l~D~~g~~~~--------~~------~---------------~~~~~~-~~d~~i~v~-d~~--~--~~s~~~~-~~~~~ 124 (203)
++||+|...- .. . .+..+. ++|+.++|. |.+ + ++.+... .+++.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 9999992111 00 0 122345 889988888 764 1 1122222 35556
Q ss_pred HHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecC
Q 048709 125 ELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASAL 173 (203)
Q Consensus 125 ~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 173 (203)
.+.. .++|+++++||.|-... ...+...++...++++++.+|+.
T Consensus 175 eLk~---~~kPfiivlN~~dp~~~--et~~l~~~l~eky~vpvl~v~c~ 218 (492)
T TIGR02836 175 ELKE---LNKPFIILLNSTHPYHP--ETEALRQELEEKYDVPVLAMDVE 218 (492)
T ss_pred HHHh---cCCCEEEEEECcCCCCc--hhHHHHHHHHHHhCCceEEEEHH
Confidence 6555 58999999999994432 23444556667788998888875
No 289
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.44 E-value=4.2e-12 Score=102.73 Aligned_cols=165 Identities=20% Similarity=0.329 Sum_probs=114.1
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC--CEEEEEEEEeCCCchhhhhhhHhhhcCC-
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN--SKIIKAQIWDTAGQERYRAVTSAYYRGA- 101 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~~~~~~~~~~~~~~- 101 (203)
....-.|+|+|..++|||||+.+|.+.+ ...++.+.++....+.-+ ....++.+|-..|...+..+....+...
T Consensus 22 ~~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~ 98 (472)
T PF05783_consen 22 LPSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPEN 98 (472)
T ss_pred CCCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccc
Confidence 3445789999999999999999997654 334566666666555432 2234689999988777777665555432
Q ss_pred ---cEEEEEEeCCCHHHHH-HHHHHHHHHHhh------------------------------------------------
Q 048709 102 ---LGAVVVYDITKRQSFD-HVARGVEELRAH------------------------------------------------ 129 (203)
Q Consensus 102 ---d~~i~v~d~~~~~s~~-~~~~~~~~~~~~------------------------------------------------ 129 (203)
-++++|+|.+.|..+- .+..|+..+...
T Consensus 99 l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~ 178 (472)
T PF05783_consen 99 LPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSD 178 (472)
T ss_pred ccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccc
Confidence 3589999999875433 344443332211
Q ss_pred --------------cCCCCcEEEEEeCCCCCcc---c----C----CCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709 130 --------------ADSSIRIILIGNKSDLVDM---W----A----VSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (203)
Q Consensus 130 --------------~~~~~p~ivv~nK~D~~~~---~----~----~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 184 (203)
...++|++||++|+|.... . + ...+-++.+|..+|+.++.||++...+++-++.+
T Consensus 179 ~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~y 258 (472)
T PF05783_consen 179 DESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKY 258 (472)
T ss_pred cccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHH
Confidence 0013899999999997431 0 0 1123367778899999999999999999999999
Q ss_pred HHHHHHHh
Q 048709 185 LLQEIYAL 192 (203)
Q Consensus 185 i~~~~~~~ 192 (203)
|...++..
T Consensus 259 i~h~l~~~ 266 (472)
T PF05783_consen 259 ILHRLYGF 266 (472)
T ss_pred HHHHhccC
Confidence 88887664
No 290
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.44 E-value=5.2e-12 Score=93.83 Aligned_cols=141 Identities=16% Similarity=0.101 Sum_probs=83.2
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 104 (203)
...+..|+++|.+|+|||||++.|.+...........+. ..+ ......++.++||||.. ..+. ...+.+|++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~--~~~l-~~ak~aDvV 107 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI--NAMI-DIAKVADLV 107 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH--HHHH-HHHHhcCEE
Confidence 445688999999999999999999875221111111111 111 11234567899999854 2222 346889999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcE-EEEEeCCCCCcccCC---CHHHHHH-HHH--HcCCeEEEEecCCCCC
Q 048709 105 VVVYDITKRQSFDHVARGVEELRAHADSSIRI-ILIGNKSDLVDMWAV---SAEDVVE-FAE--DQGLFFSEASALNGDN 177 (203)
Q Consensus 105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~~~~---~~~~~~~-~~~--~~~~~~~~~sa~~~~~ 177 (203)
++|+|++....... ...+..+.. .+.|. ++|+||+|+.+.... ...++++ +.. ..+.+++.+||+++..
T Consensus 108 llviDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 108 LLLIDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred EEEEecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence 99999986433222 122233322 35674 559999998642111 1122222 221 2346899999998744
No 291
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.43 E-value=5.8e-14 Score=104.72 Aligned_cols=109 Identities=19% Similarity=0.189 Sum_probs=57.6
Q ss_pred EEEEEeCCCchhhhhhhHhhh--------cCCcEEEEEEeCCC---HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 048709 78 KAQIWDTAGQERYRAVTSAYY--------RGALGAVVVYDITK---RQSFDHVARGVEELRAHADSSIRIILIGNKSDLV 146 (203)
Q Consensus 78 ~~~l~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 146 (203)
.+.++|||||.++-..+.... ...-++++++|+.. +..+- ..++..+......+.|.+.|+||+|+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~--s~~L~s~s~~~~~~lP~vnvlsK~Dl~ 169 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFV--SSLLLSLSIMLRLELPHVNVLSKIDLL 169 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHH--HHHHHHHHHHHHHTSEEEEEE--GGGS
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHH--HHHHHHHHHHhhCCCCEEEeeeccCcc
Confidence 689999999877655443322 34457888898864 33332 233333333333589999999999997
Q ss_pred ccc-------CCCH------------HHHHHHHH---HcC-C-eEEEEecCCCCCHHHHHHHHHHH
Q 048709 147 DMW-------AVSA------------EDVVEFAE---DQG-L-FFSEASALNGDNVDTAFFRLLQE 188 (203)
Q Consensus 147 ~~~-------~~~~------------~~~~~~~~---~~~-~-~~~~~sa~~~~~i~~~~~~i~~~ 188 (203)
... -... ....+++. ..+ . .++.+|+.++.|+.+++..+-+.
T Consensus 170 ~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 170 SKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp -HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred cchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 621 0000 00111111 122 3 69999999999999998777654
No 292
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.42 E-value=1.4e-12 Score=92.57 Aligned_cols=110 Identities=18% Similarity=0.167 Sum_probs=68.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC---------------CE--------------------
Q 048709 31 VVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN---------------SK-------------------- 75 (203)
Q Consensus 31 i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~-------------------- 75 (203)
|+|+|..++|||||+|+|++.++.+......+..+.......+ ..
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 7899999999999999999987544332222111111111100 00
Q ss_pred -------------------EEEEEEEeCCCchh----hhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCC
Q 048709 76 -------------------IIKAQIWDTAGQER----YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS 132 (203)
Q Consensus 76 -------------------~~~~~l~D~~g~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 132 (203)
...+.|+||||... ...+...|++.+|++++|.+++...+-.....+...... .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~---~ 157 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP---D 157 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT---T
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC---C
Confidence 12478999999533 335677888999999999999985544444333333332 2
Q ss_pred CCcEEEEEeCC
Q 048709 133 SIRIILIGNKS 143 (203)
Q Consensus 133 ~~p~ivv~nK~ 143 (203)
...+++|.||.
T Consensus 158 ~~~~i~V~nk~ 168 (168)
T PF00350_consen 158 KSRTIFVLNKA 168 (168)
T ss_dssp CSSEEEEEE-G
T ss_pred CCeEEEEEcCC
Confidence 33489999984
No 293
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.42 E-value=3.7e-12 Score=98.53 Aligned_cols=118 Identities=16% Similarity=0.216 Sum_probs=87.1
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHH----------HHHHHHHHHHHHHhhcC-CCCcEEEEEeCCC
Q 048709 76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQ----------SFDHVARGVEELRAHAD-SSIRIILIGNKSD 144 (203)
Q Consensus 76 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D 144 (203)
...+.++|.+||...+.-|..+|.+++++|||+++++.+ .+.+...+++.+.+... .+.++|+++||.|
T Consensus 194 ~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~D 273 (354)
T KOG0082|consen 194 GLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKD 273 (354)
T ss_pred CCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHH
Confidence 367899999999998888999999999999999998621 22233455555555544 7799999999999
Q ss_pred CCcc---------------cCCCHHHHHHHHHH----------cCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q 048709 145 LVDM---------------WAVSAEDVVEFAED----------QGLFFSEASALNGDNVDTAFFRLLQEIYALS 193 (203)
Q Consensus 145 ~~~~---------------~~~~~~~~~~~~~~----------~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~~ 193 (203)
+... .....+++..+... ..+.+..+.|.+-.+|+.+|..+.+.+....
T Consensus 274 LFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n 347 (354)
T KOG0082|consen 274 LFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNN 347 (354)
T ss_pred HHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence 8531 11345566555432 2345667789999999999999998887643
No 294
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.42 E-value=1.2e-12 Score=88.08 Aligned_cols=114 Identities=30% Similarity=0.376 Sum_probs=81.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCC-CCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSK-STIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 107 (203)
+||+++|..|+|||+|+.++....+...+. ++.+ +......+.+.++.++.|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999997766643332 2221 222234567788999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 048709 108 YDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVD 179 (203)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 179 (203)
++.++..+++.+ |...+......++|.++++||.|+.+..+...++.. .++++|+++|.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHHhCCCcchhh
Confidence 999999988765 766666555567889999999998543333333332 35577889998874
No 295
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.41 E-value=1e-12 Score=98.64 Aligned_cols=96 Identities=22% Similarity=0.197 Sum_probs=77.3
Q ss_pred hhhhhhhHhhhcCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCe
Q 048709 88 ERYRAVTSAYYRGALGAVVVYDITKRQ-SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLF 166 (203)
Q Consensus 88 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 166 (203)
++++.+.+.++.++|++++|+|+.++. ++..+.+|+..+.. .++|+++|+||+|+.+......+.+..+ ...+++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence 567777888999999999999999877 89999999876543 5789999999999975433333334433 457889
Q ss_pred EEEEecCCCCCHHHHHHHHHH
Q 048709 167 FSEASALNGDNVDTAFFRLLQ 187 (203)
Q Consensus 167 ~~~~sa~~~~~i~~~~~~i~~ 187 (203)
++++||++|.|++++|+.+.+
T Consensus 100 v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEEecCCchhHHHHHhhhcC
Confidence 999999999999999988764
No 296
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=1.4e-12 Score=98.34 Aligned_cols=166 Identities=17% Similarity=0.127 Sum_probs=108.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCC---ccCCCCCccee------------------eEEEEEEEC------CEEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEF---CFDSKSTIGVE------------------FQTRTVTIN------SKIIK 78 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~---~~~~~~~~~~~------------------~~~~~~~~~------~~~~~ 78 (203)
+..++|.++|...-|||||..+|.+--. +.+.....++. .+...-.+. .-...
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 4579999999999999999999976311 11111111100 111111111 12357
Q ss_pred EEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc--CCCHHHH
Q 048709 79 AQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW--AVSAEDV 156 (203)
Q Consensus 79 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~ 156 (203)
+.|.|+||++-.-..+-.-..-.|++++|++++.+.-..+.++-+..+.... -..++++-||+|+...+ ..+++++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHH
Confidence 8899999987655544444455699999999998543333333333333332 23489999999997642 2456778
Q ss_pred HHHHHH---cCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q 048709 157 VEFAED---QGLFFSEASALNGDNVDTAFFRLLQEIYALS 193 (203)
Q Consensus 157 ~~~~~~---~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~~ 193 (203)
++|.+. .+.|++++||..+.|++-+++.|.+.+....
T Consensus 166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~ 205 (415)
T COG5257 166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPE 205 (415)
T ss_pred HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCc
Confidence 888764 4679999999999999999999988876543
No 297
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.40 E-value=2.2e-12 Score=110.67 Aligned_cols=118 Identities=15% Similarity=0.166 Sum_probs=77.4
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCC--CccCC--------------CCCcceeeEEEE--EEECCEEEEEEEEeCCC
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNE--FCFDS--------------KSTIGVEFQTRT--VTINSKIIKAQIWDTAG 86 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~--~~~~~--------------~~~~~~~~~~~~--~~~~~~~~~~~l~D~~g 86 (203)
.++-.+|+++|+.++|||||+.+|+... ..... ....+....... +..++....++|+||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 3456789999999999999999997521 11000 001111111112 22344567889999999
Q ss_pred chhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 048709 87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV 146 (203)
Q Consensus 87 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 146 (203)
...|.......++.+|++++|+|+........ ...+..... .+.|.++++||+|..
T Consensus 97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t-~~~~~~~~~---~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQT-ETVLRQALR---ERVKPVLFINKVDRL 152 (731)
T ss_pred ccChHHHHHHHHHhcCEEEEEEECCCCCCccH-HHHHHHHHH---cCCCeEEEEECchhh
Confidence 98887777788999999999999987532222 222232222 256789999999975
No 298
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.39 E-value=7.6e-12 Score=95.54 Aligned_cols=141 Identities=16% Similarity=0.240 Sum_probs=76.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCC----------CCCcceeeEEEEEEECCEEEEEEEEeCCCchh-------
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDS----------KSTIGVEFQTRTVTINSKIIKAQIWDTAGQER------- 89 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~------- 89 (203)
-.++|+|+|.+|+|||||+|.|++....... ..+.........+.-++..+.+.++||||...
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 3689999999999999999999987554332 12233333344455578889999999999211
Q ss_pred hhhh-------hHhhh-------------cCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcc
Q 048709 90 YRAV-------TSAYY-------------RGALGAVVVYDITKRQ-SFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148 (203)
Q Consensus 90 ~~~~-------~~~~~-------------~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 148 (203)
+..+ ...++ ..+|+++++++.+... .-.++ ..+..+. ..+++|.|+.|+|....
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~Ls----~~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRLS----KRVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHHT----TTSEEEEEESTGGGS-H
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHhc----ccccEEeEEecccccCH
Confidence 1110 00111 3568999999987521 11122 2222222 46789999999997542
Q ss_pred cC--CCHHHHHHHHHHcCCeEEEEec
Q 048709 149 WA--VSAEDVVEFAEDQGLFFSEASA 172 (203)
Q Consensus 149 ~~--~~~~~~~~~~~~~~~~~~~~sa 172 (203)
.+ .-.+.+.+-+...+++++....
T Consensus 158 ~el~~~k~~i~~~l~~~~I~~f~f~~ 183 (281)
T PF00735_consen 158 EELQAFKQRIREDLEENNIKIFDFPE 183 (281)
T ss_dssp HHHHHHHHHHHHHHHHTT--S-----
T ss_pred HHHHHHHHHHHHHHHHcCceeecccc
Confidence 11 1123344445567777665443
No 299
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.37 E-value=5.2e-12 Score=109.76 Aligned_cols=118 Identities=18% Similarity=0.172 Sum_probs=79.4
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCc--c--------------CCCCCcceeeEEEEEEE--------------CC
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFC--F--------------DSKSTIGVEFQTRTVTI--------------NS 74 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~--------------~~ 74 (203)
.++-.+|+|+|+.++|||||+++|+...-. . +.....+.......+.+ ++
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 445689999999999999999999753210 0 00011111111222222 12
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 048709 75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV 146 (203)
Q Consensus 75 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 146 (203)
....++++||||+..|.......++.+|++|+|+|+...-..... ..+..+.. .++|+++++||+|..
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~~~~~~---~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG---ERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHHHHHHH---CCCCEEEEEECCccc
Confidence 356789999999999887777788999999999999875433222 22233332 578999999999987
No 300
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.36 E-value=7e-12 Score=92.08 Aligned_cols=151 Identities=13% Similarity=0.139 Sum_probs=82.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC-CC--c---cCCCCCccee------eEEEEEEE-CC-------------------
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKN-EF--C---FDSKSTIGVE------FQTRTVTI-NS------------------- 74 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~-~~--~---~~~~~~~~~~------~~~~~~~~-~~------------------- 74 (203)
....|+|+|..|||||||++++... .. . .......+.+ .....+.. ++
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 4688999999999999999998653 10 0 0000000000 00000001 11
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHH
Q 048709 75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAE 154 (203)
Q Consensus 75 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 154 (203)
....+.+++|.|.-.. . ..+....+..+.|+|+.+.+... ..... . ...|.++++||+|+.+.......
T Consensus 101 ~~~d~IiIEt~G~l~~-~--~~~~~~~~~~i~Vvd~~~~d~~~--~~~~~-~-----~~~a~iiv~NK~Dl~~~~~~~~~ 169 (207)
T TIGR00073 101 DDIDLLFIENVGNLVC-P--ADFDLGEHMRVVLLSVTEGDDKP--LKYPG-M-----FKEADLIVINKADLAEAVGFDVE 169 (207)
T ss_pred CCCCEEEEecCCCcCC-C--cccccccCeEEEEEecCcccchh--hhhHh-H-----HhhCCEEEEEHHHccccchhhHH
Confidence 1235666777662100 0 01112234456677776543211 01111 1 24567999999999753222334
Q ss_pred HHHHHHHHc--CCeEEEEecCCCCCHHHHHHHHHHH
Q 048709 155 DVVEFAEDQ--GLFFSEASALNGDNVDTAFFRLLQE 188 (203)
Q Consensus 155 ~~~~~~~~~--~~~~~~~sa~~~~~i~~~~~~i~~~ 188 (203)
+..+..+.. ..+++++||++|.|++++++++.+.
T Consensus 170 ~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 170 KMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 454444443 4889999999999999999999874
No 301
>PTZ00416 elongation factor 2; Provisional
Probab=99.36 E-value=6.7e-12 Score=108.92 Aligned_cols=117 Identities=19% Similarity=0.195 Sum_probs=77.8
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCC--ccC--------------CCCCcceeeEEEEEEEC--------CEEEEEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEF--CFD--------------SKSTIGVEFQTRTVTIN--------SKIIKAQI 81 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~--~~~--------------~~~~~~~~~~~~~~~~~--------~~~~~~~l 81 (203)
+...+|+++|+.++|||||+++|+...- ... .....+.......+.+. +....+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 4557999999999999999999976221 100 00111111111222222 22567899
Q ss_pred EeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 048709 82 WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV 146 (203)
Q Consensus 82 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 146 (203)
+||||...|.......++.+|++++|+|+.+.-.... ...+..+.. .++|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH---cCCCEEEEEEChhhh
Confidence 9999998887777778899999999999987533222 233333333 468999999999986
No 302
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.36 E-value=1.1e-12 Score=96.86 Aligned_cols=154 Identities=18% Similarity=0.151 Sum_probs=90.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC------C-----CccCCCCCcc---------------eeeEEEEEEECCE-----
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKN------E-----FCFDSKSTIG---------------VEFQTRTVTINSK----- 75 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~------~-----~~~~~~~~~~---------------~~~~~~~~~~~~~----- 75 (203)
+.+.|+|.|+||+|||||++.|... + ++++++.+-+ ...+.+.+.-.+.
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 5689999999999999999988431 1 1222211100 2223333322221
Q ss_pred -------------EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 048709 76 -------------IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNK 142 (203)
Q Consensus 76 -------------~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK 142 (203)
.+.+.|++|.|--... -....-+|.+++|......+..+-++.-+.++.. ++|+||
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD--------i~vVNK 176 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEIAD--------IFVVNK 176 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S--------EEEEE-
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhhcc--------EEEEeC
Confidence 3678888988722211 2356678999999998776665555544444443 899999
Q ss_pred CCCCcccCCCHHHHHHHHHH-------cCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709 143 SDLVDMWAVSAEDVVEFAED-------QGLFFSEASALNGDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 143 ~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~ 192 (203)
.|.+.. .....++...... +..|++.|||.++.|++++++.|.++....
T Consensus 177 aD~~gA-~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l 232 (266)
T PF03308_consen 177 ADRPGA-DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYL 232 (266)
T ss_dssp -SHHHH-HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CChHHH-HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 997543 2223344443332 235899999999999999999998866543
No 303
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.35 E-value=2.3e-11 Score=92.96 Aligned_cols=152 Identities=25% Similarity=0.290 Sum_probs=102.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCc------------c-------------------CCCCCcceeeEEEEEEECC
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFC------------F-------------------DSKSTIGVEFQTRTVTINS 74 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~------------~-------------------~~~~~~~~~~~~~~~~~~~ 74 (203)
...++++.+|...-||||||-+|+..... . ......|++.......+.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 35699999999999999999998653110 0 0012334445554444555
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHH
Q 048709 75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAE 154 (203)
Q Consensus 75 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 154 (203)
...+|.+.||||++.|...+..-..-||++|+++|+...- +++.++- ..+....+ -..+++.+||+|+.+-.+...+
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrRH-s~I~sLLG-IrhvvvAVNKmDLvdy~e~~F~ 160 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRRH-SFIASLLG-IRHVVVAVNKMDLVDYSEEVFE 160 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHHH-HHHHHHhC-CcEEEEEEeeecccccCHHHHH
Confidence 5678999999999999988877788899999999997532 2222111 11222221 2348899999999875443333
Q ss_pred ----HHHHHHHHcCC---eEEEEecCCCCCHHH
Q 048709 155 ----DVVEFAEDQGL---FFSEASALNGDNVDT 180 (203)
Q Consensus 155 ----~~~~~~~~~~~---~~~~~sa~~~~~i~~ 180 (203)
+-..|+...++ .++++||..|+|+..
T Consensus 161 ~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 161 AIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 44566777765 589999999988753
No 304
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.34 E-value=1.7e-11 Score=94.93 Aligned_cols=102 Identities=18% Similarity=0.001 Sum_probs=64.5
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHH
Q 048709 76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAED 155 (203)
Q Consensus 76 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 155 (203)
.+.+.|+||+|.... .......+|.++++......+. +......+ .++|.++++||+|+..... ...
T Consensus 126 g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~~~e---l~~~~~~l-----~~~~~ivv~NK~Dl~~~~~--~~~ 192 (300)
T TIGR00750 126 GYDVIIVETVGVGQS---EVDIANMADTFVVVTIPGTGDD---LQGIKAGL-----MEIADIYVVNKADGEGATN--VTI 192 (300)
T ss_pred CCCEEEEeCCCCchh---hhHHHHhhceEEEEecCCccHH---HHHHHHHH-----hhhccEEEEEcccccchhH--HHH
Confidence 467899999984321 2235667888888865443332 32222222 2466799999999875321 111
Q ss_pred H--------HHHHH---HcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 048709 156 V--------VEFAE---DQGLFFSEASALNGDNVDTAFFRLLQEIY 190 (203)
Q Consensus 156 ~--------~~~~~---~~~~~~~~~sa~~~~~i~~~~~~i~~~~~ 190 (203)
. ..+.. .+..+++.+||+++.|++++++++.+...
T Consensus 193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 1 11111 12346999999999999999999998754
No 305
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.33 E-value=3.7e-11 Score=99.37 Aligned_cols=123 Identities=14% Similarity=0.147 Sum_probs=74.6
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCC-CcceeeEEEEEEECCEEEEEEEEeCCCchhhh-------hh-
Q 048709 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKS-TIGVEFQTRTVTINSKIIKAQIWDTAGQERYR-------AV- 93 (203)
Q Consensus 23 ~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~- 93 (203)
.+.+..++|+|+|.+|+||||++|+|++......... ..+..........++ ..+.++||||..... ..
T Consensus 113 ~~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeIL 190 (763)
T TIGR00993 113 DPLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKIL 190 (763)
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHH
Confidence 3345678999999999999999999999865433321 122222222223344 568999999954321 11
Q ss_pred --hHhhhc--CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCC--CcEEEEEeCCCCCc
Q 048709 94 --TSAYYR--GALGAVVVYDITKRQSFDHVARGVEELRAHADSS--IRIILIGNKSDLVD 147 (203)
Q Consensus 94 --~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~ 147 (203)
...++. ..|++|+|..++.......-..++..+...++.. ..+|||+|+.|...
T Consensus 191 k~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 191 SSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 112333 5799999988764322111124445555444422 34799999999764
No 306
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=1.4e-11 Score=101.84 Aligned_cols=158 Identities=21% Similarity=0.263 Sum_probs=103.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC------------CE-E---EEEEEEeCCCchhhh
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN------------SK-I---IKAQIWDTAGQERYR 91 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~-~---~~~~l~D~~g~~~~~ 91 (203)
..=+||+|...+|||-|+..+.+.++........+.......++.. +. . --+.++||||++.|.
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt 554 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT 554 (1064)
T ss_pred CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence 3558999999999999999998866544332222211111111111 00 0 136789999999999
Q ss_pred hhhHhhhcCCcEEEEEEeCCCH---HHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC-------------CCHHH
Q 048709 92 AVTSAYYRGALGAVVVYDITKR---QSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA-------------VSAED 155 (203)
Q Consensus 92 ~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-------------~~~~~ 155 (203)
.+.......||.+|+|+|+.+. ++.+.+ +.++. +++|+||.+||+|..-.|. ....-
T Consensus 555 nlRsrgsslC~~aIlvvdImhGlepqtiESi----~lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v 627 (1064)
T KOG1144|consen 555 NLRSRGSSLCDLAILVVDIMHGLEPQTIESI----NLLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDV 627 (1064)
T ss_pred hhhhccccccceEEEEeehhccCCcchhHHH----HHHHh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHH
Confidence 9999999999999999999873 333332 23333 5899999999999753211 01111
Q ss_pred -----------HHHHHHH--------------cCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709 156 -----------VVEFAED--------------QGLFFSEASALNGDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 156 -----------~~~~~~~--------------~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~ 192 (203)
+.+|+.+ .-+.++++||..|.||.+++-+|++.....
T Consensus 628 ~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~ 689 (1064)
T KOG1144|consen 628 QNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKT 689 (1064)
T ss_pred HHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHH
Confidence 1122211 013578899999999999999999877654
No 307
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.33 E-value=3.4e-12 Score=96.41 Aligned_cols=156 Identities=19% Similarity=0.123 Sum_probs=108.7
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCch---------hhhhhhH
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE---------RYRAVTS 95 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~ 95 (203)
.....-|.|||.+|+|||||+++|++-...+...-..+.+++.......... .+.+.||.|.- .|....+
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~ATLe 253 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQATLE 253 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHHHH
Confidence 4455779999999999999999999777766666666677666666654333 46889999932 2233222
Q ss_pred hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCc----EEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEe
Q 048709 96 AYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR----IILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEAS 171 (203)
Q Consensus 96 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p----~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 171 (203)
....+|.++.|.|+++|..-++....+..+....-+..| ++=|-||+|..... ...+ .++ .+.+|
T Consensus 254 -eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~-~e~E-------~n~--~v~is 322 (410)
T KOG0410|consen 254 -EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE-VEEE-------KNL--DVGIS 322 (410)
T ss_pred -HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccccc-Cccc-------cCC--ccccc
Confidence 257889999999999998777766666665554333333 45567888875431 1111 111 56789
Q ss_pred cCCCCCHHHHHHHHHHHHHHh
Q 048709 172 ALNGDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 172 a~~~~~i~~~~~~i~~~~~~~ 192 (203)
|++|.|.+++.+.+-.+....
T Consensus 323 altgdgl~el~~a~~~kv~~~ 343 (410)
T KOG0410|consen 323 ALTGDGLEELLKAEETKVASE 343 (410)
T ss_pred cccCccHHHHHHHHHHHhhhh
Confidence 999999999998888777664
No 308
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.32 E-value=1.4e-11 Score=92.52 Aligned_cols=167 Identities=16% Similarity=0.133 Sum_probs=104.3
Q ss_pred ccccCCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcC-----------CCccCCCCCcc---------------eeeEEEE
Q 048709 16 QQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKN-----------EFCFDSKSTIG---------------VEFQTRT 69 (203)
Q Consensus 16 ~~~~~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~-----------~~~~~~~~~~~---------------~~~~~~~ 69 (203)
+.....-+...+...|.+.|.||+|||||+..|... -++++++.|-+ ...+.+.
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs 118 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRS 118 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEee
Confidence 334444344556789999999999999999987431 12233322211 1111111
Q ss_pred EEE------------------CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcC
Q 048709 70 VTI------------------NSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD 131 (203)
Q Consensus 70 ~~~------------------~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 131 (203)
..- +...+.+.|++|.|--... -....-+|.+++|.-..-.+..+-++.-+..+..
T Consensus 119 ~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD--- 192 (323)
T COG1703 119 SPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD--- 192 (323)
T ss_pred cCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh---
Confidence 111 1124678899998733222 2345568999999888777777777766666554
Q ss_pred CCCcEEEEEeCCCCCcccCCCHHHHHHHHH---------HcCCeEEEEecCCCCCHHHHHHHHHHHHHHhhc
Q 048709 132 SSIRIILIGNKSDLVDMWAVSAEDVVEFAE---------DQGLFFSEASALNGDNVDTAFFRLLQEIYALSK 194 (203)
Q Consensus 132 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~~~ 194 (203)
++|+||.|..+. +....++..... .|.-|++.+||.+|.|++++++.|.++......
T Consensus 193 -----i~vINKaD~~~A-~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~ 258 (323)
T COG1703 193 -----IIVINKADRKGA-EKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTE 258 (323)
T ss_pred -----eeeEeccChhhH-HHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHh
Confidence 899999996542 111222222111 233579999999999999999999988765443
No 309
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=1.6e-10 Score=89.49 Aligned_cols=84 Identities=18% Similarity=0.138 Sum_probs=64.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECC----------------EEEEEEEEeCCCch---
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINS----------------KIIKAQIWDTAGQE--- 88 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~l~D~~g~~--- 88 (203)
.+++++||.|++|||||+|+++.......+.|..++++..-...+.. ....+.++|.+|..
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 47899999999999999999999887666668888887776665522 13468899999832
Q ss_pred ----hhhhhhHhhhcCCcEEEEEEeCC
Q 048709 89 ----RYRAVTSAYYRGALGAVVVYDIT 111 (203)
Q Consensus 89 ----~~~~~~~~~~~~~d~~i~v~d~~ 111 (203)
....-.-..++.+|+++.|++..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 22333445688999999999976
No 310
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.31 E-value=3.8e-11 Score=94.78 Aligned_cols=162 Identities=18% Similarity=0.242 Sum_probs=110.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC--Ccc----------C--CCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhh
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNE--FCF----------D--SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV 93 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~--~~~----------~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 93 (203)
-.+|+++-...-|||||+..|+... +.. + ....-+++.-.+...+..+...++++||||+-.|..-
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 4689999999999999999997642 111 0 0112223333333344455678999999999999988
Q ss_pred hHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC-CCHHHHHHHHH-------HcCC
Q 048709 94 TSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA-VSAEDVVEFAE-------DQGL 165 (203)
Q Consensus 94 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~ 165 (203)
.+..+.=+|++++++|+.+..- .+.+- .+.+....+.+.|+|+||+|.+..+. .-.+++..+.. +.++
T Consensus 85 VERvl~MVDgvlLlVDA~EGpM-PQTrF---VlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF 160 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGPM-PQTRF---VLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF 160 (603)
T ss_pred hhhhhhhcceEEEEEEcccCCC-Cchhh---hHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence 8888999999999999987321 11111 12223335677789999999987432 11234444433 3567
Q ss_pred eEEEEecCCC----------CCHHHHHHHHHHHHHHhh
Q 048709 166 FFSEASALNG----------DNVDTAFFRLLQEIYALS 193 (203)
Q Consensus 166 ~~~~~sa~~~----------~~i~~~~~~i~~~~~~~~ 193 (203)
|++..|++.| .++.-+|+.|++++....
T Consensus 161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 161 PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 8999999877 468889999999887654
No 311
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.28 E-value=1.3e-11 Score=89.11 Aligned_cols=147 Identities=19% Similarity=0.235 Sum_probs=90.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhh-----hhHhhhcC
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRA-----VTSAYYRG 100 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-----~~~~~~~~ 100 (203)
..-||+++|.+||||||+=-.++..-.. ....++.+++.......+-|+ ..+.+||++|++.+-. .....+.+
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~n 81 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRN 81 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhhee
Confidence 3568999999999999876555532211 122234444555544444443 4589999999885432 33457889
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHH---HHHHhhcCCCCcEEEEEeCCCCCccc--CCCHH----HHHHHHHHcCCeEEEEe
Q 048709 101 ALGAVVVYDITKRQSFDHVARGV---EELRAHADSSIRIILIGNKSDLVDMW--AVSAE----DVVEFAEDQGLFFSEAS 171 (203)
Q Consensus 101 ~d~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~----~~~~~~~~~~~~~~~~s 171 (203)
++++++|||++..+-..++..+- +.+.+. .+...+.+.++|.|+.... +...+ .+.......++.++++|
T Consensus 82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~-SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Ts 160 (295)
T KOG3886|consen 82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQN-SPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTS 160 (295)
T ss_pred heeeeeeeeccchhhhhhHHHHHHHHHHHHhc-CCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccc
Confidence 99999999999876555554333 333333 2667788999999997532 11111 12222223345677777
Q ss_pred cCCC
Q 048709 172 ALNG 175 (203)
Q Consensus 172 a~~~ 175 (203)
..+.
T Consensus 161 iwDe 164 (295)
T KOG3886|consen 161 IWDE 164 (295)
T ss_pred hhhH
Confidence 7654
No 312
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=2.2e-10 Score=87.49 Aligned_cols=162 Identities=15% Similarity=0.192 Sum_probs=93.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCC----ccCC---CCCcceeeEEEEEEE-------CCEEEEEEEEeCCCchhhh
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEF----CFDS---KSTIGVEFQTRTVTI-------NSKIIKAQIWDTAGQERYR 91 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~----~~~~---~~~~~~~~~~~~~~~-------~~~~~~~~l~D~~g~~~~~ 91 (203)
+..+++.++|...||||||.++|..-.. +... .+..+.+.--..+.+ .+...++.++|+||+..
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas-- 82 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS-- 82 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH--
Confidence 4459999999999999999999965321 1111 111111111111111 34557899999999554
Q ss_pred hhhHhhhcC---CcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcc--cCCCHH-HHHHHH---HH
Q 048709 92 AVTSAYYRG---ALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM--WAVSAE-DVVEFA---ED 162 (203)
Q Consensus 92 ~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~~~-~~~~~~---~~ 162 (203)
+.+..+.+ .|..++|+|+.....-+...-++ +.... -...++|+||+|.... +....+ ..++.. ..
T Consensus 83 -LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLi--ig~~~--c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~ 157 (522)
T KOG0461|consen 83 -LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLI--IGELL--CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLES 157 (522)
T ss_pred -HHHHHHhhhheeeeeeEEEehhcccccccchhhh--hhhhh--ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHh
Confidence 44454444 47789999998642222221111 11111 1236888899886432 111111 112221 12
Q ss_pred c----CCeEEEEecCCC----CCHHHHHHHHHHHHHHhhc
Q 048709 163 Q----GLFFSEASALNG----DNVDTAFFRLLQEIYALSK 194 (203)
Q Consensus 163 ~----~~~~~~~sa~~~----~~i~~~~~~i~~~~~~~~~ 194 (203)
. +.|++++|+..| .++.++.+.+.+.+....+
T Consensus 158 t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~R 197 (522)
T KOG0461|consen 158 TGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKR 197 (522)
T ss_pred cCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCc
Confidence 2 368999999999 7788777777777766544
No 313
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.23 E-value=2.4e-10 Score=85.16 Aligned_cols=118 Identities=15% Similarity=0.214 Sum_probs=69.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcce-----------eeEEEEEEECC---------------------
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGV-----------EFQTRTVTINS--------------------- 74 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~-----------~~~~~~~~~~~--------------------- 74 (203)
...+|+|+|+.|+||||+++++.+..+.+...-..+. ..+...+.+.+
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4468999999999999999999987532211100000 00011111110
Q ss_pred ------------------EEEEEEEEeCCCchh-------------hhhhhHhhhcC-CcEEEEEEeCCCHHHHHHHHHH
Q 048709 75 ------------------KIIKAQIWDTAGQER-------------YRAVTSAYYRG-ALGAVVVYDITKRQSFDHVARG 122 (203)
Q Consensus 75 ------------------~~~~~~l~D~~g~~~-------------~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~ 122 (203)
....+.++|+||... ...+...|+++ .+++++|+|++..-.-.....+
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence 014688999999531 12345567774 4588999988653221121122
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709 123 VEELRAHADSSIRIILIGNKSDLVD 147 (203)
Q Consensus 123 ~~~~~~~~~~~~p~ivv~nK~D~~~ 147 (203)
...+.. .+.|+++|+||.|..+
T Consensus 185 a~~ld~---~~~rti~ViTK~D~~~ 206 (240)
T smart00053 185 AKEVDP---QGERTIGVITKLDLMD 206 (240)
T ss_pred HHHHHH---cCCcEEEEEECCCCCC
Confidence 222222 5678999999999876
No 314
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=1.1e-10 Score=94.26 Aligned_cols=152 Identities=24% Similarity=0.274 Sum_probs=100.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC--------------------CCc---------cCCCCCcceeeEEEEEEECCEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKN--------------------EFC---------FDSKSTIGVEFQTRTVTINSKII 77 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~--------------------~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 77 (203)
..+.++|+|...+|||||+-+|+.. +.+ ....+.-|+........++-...
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 4699999999999999999987431 111 00113334555556666666667
Q ss_pred EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCH---HHHH---HHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCC
Q 048709 78 KAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKR---QSFD---HVARGVEELRAHADSSIRIILIGNKSDLVDMWAV 151 (203)
Q Consensus 78 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~---~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 151 (203)
.++|.|+||+..|-...-.-...+|+.++|+|++-. ..|+ ++++- ..+.+..+ -.-++|++||+|..+..+.
T Consensus 256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEh-a~llr~Lg-i~qlivaiNKmD~V~Wsq~ 333 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREH-ALLLRSLG-ISQLIVAINKMDLVSWSQD 333 (603)
T ss_pred eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHH-HHHHHHcC-cceEEEEeecccccCccHH
Confidence 899999999888887777778889999999999852 1222 11221 12222221 3348999999999875444
Q ss_pred CHHHHH----HHH-HHcC-----CeEEEEecCCCCCHHH
Q 048709 152 SAEDVV----EFA-EDQG-----LFFSEASALNGDNVDT 180 (203)
Q Consensus 152 ~~~~~~----~~~-~~~~-----~~~~~~sa~~~~~i~~ 180 (203)
..++++ .|+ ...| +.|++||+..|.|+-.
T Consensus 334 RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 334 RFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred HHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 444443 344 3333 4799999999998653
No 315
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.22 E-value=1.2e-10 Score=82.36 Aligned_cols=77 Identities=18% Similarity=0.144 Sum_probs=52.3
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhhcCCC--CcEEEEEeCCCCCcccCCCHHHHHHHHHH--cCCeEEEEecCCCCCH
Q 048709 103 GAVVVYDITKRQSFDHVARGVEELRAHADSS--IRIILIGNKSDLVDMWAVSAEDVVEFAED--QGLFFSEASALNGDNV 178 (203)
Q Consensus 103 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~~~~i 178 (203)
.-|+|+|++..+.. -++..+. ..=++|+||.|+...-..+.+...+-+++ ...+++++|+++|.|+
T Consensus 120 ~~v~VidvteGe~~----------P~K~gP~i~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~ 189 (202)
T COG0378 120 LRVVVIDVTEGEDI----------PRKGGPGIFKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGL 189 (202)
T ss_pred eEEEEEECCCCCCC----------cccCCCceeEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCH
Confidence 66888888764321 1110010 13489999999987544545555555544 5689999999999999
Q ss_pred HHHHHHHHHHH
Q 048709 179 DTAFFRLLQEI 189 (203)
Q Consensus 179 ~~~~~~i~~~~ 189 (203)
+++++|+....
T Consensus 190 ~~~~~~i~~~~ 200 (202)
T COG0378 190 DEWLRFIEPQA 200 (202)
T ss_pred HHHHHHHHhhc
Confidence 99999887643
No 316
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.21 E-value=4.3e-10 Score=86.69 Aligned_cols=139 Identities=14% Similarity=0.195 Sum_probs=84.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccC----------CCCCcceeeEEEEEEECCEEEEEEEEeCCCchh------
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFD----------SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER------ 89 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~------ 89 (203)
.-.++|+++|+.|+|||||+|.|++...... ..++.....+...+.-++..+.++++||||...
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 4579999999999999999999998743222 123333444445555578888999999999311
Q ss_pred -hh-------hhhHhhh--------------cCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 048709 90 -YR-------AVTSAYY--------------RGALGAVVVYDITKRQ-SFDHVARGVEELRAHADSSIRIILIGNKSDLV 146 (203)
Q Consensus 90 -~~-------~~~~~~~--------------~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 146 (203)
|. .....|+ ..+|+++|.+..+... +-.++ ..+..+. ..+-+|.|+.|+|..
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DI-e~Mk~ls----~~vNlIPVI~KaD~l 175 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDI-EAMKRLS----KRVNLIPVIAKADTL 175 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHH-HHHHHHh----cccCeeeeeeccccC
Confidence 11 1111122 3568888888876521 11111 2222222 345689999999976
Q ss_pred cccC--CCHHHHHHHHHHcCCeEEE
Q 048709 147 DMWA--VSAEDVVEFAEDQGLFFSE 169 (203)
Q Consensus 147 ~~~~--~~~~~~~~~~~~~~~~~~~ 169 (203)
...+ .-.+.+.+....+.+++|.
T Consensus 176 T~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 176 TDDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred CHHHHHHHHHHHHHHHHHhCCceeC
Confidence 4211 2233455556677777774
No 317
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.21 E-value=6.4e-11 Score=89.88 Aligned_cols=81 Identities=17% Similarity=0.117 Sum_probs=59.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEE---------------EEEEEEeCCCchh------
Q 048709 31 VVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKI---------------IKAQIWDTAGQER------ 89 (203)
Q Consensus 31 i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~D~~g~~~------ 89 (203)
|+++|.|+||||||+|+|++........+.++.++....+.+.+.. .++.++|+||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5899999999999999999988766555666666666666664432 2589999999432
Q ss_pred -hhhhhHhhhcCCcEEEEEEeCC
Q 048709 90 -YRAVTSAYYRGALGAVVVYDIT 111 (203)
Q Consensus 90 -~~~~~~~~~~~~d~~i~v~d~~ 111 (203)
.....-..++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1112223467899999999873
No 318
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=1.4e-09 Score=84.38 Aligned_cols=143 Identities=15% Similarity=0.224 Sum_probs=87.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccC---------CCCCcceeeEEEEEEECCEEEEEEEEeCCCchh-------h
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFD---------SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER-------Y 90 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~ 90 (203)
-.+.++++|.+|.|||||+|+|+...+... ...+.....+...+.-+|..+.++++||||... |
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 469999999999999999999988754422 112334444444555578888999999999211 1
Q ss_pred h-------hhhHhhh-------------cCCcEEEEEEeCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCccc
Q 048709 91 R-------AVTSAYY-------------RGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDMW 149 (203)
Q Consensus 91 ~-------~~~~~~~-------------~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 149 (203)
. +....|+ ..+|+++|.+..+.. .+..+. ..+..+. ..+.+|.|+.|.|.....
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~~ 174 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS----KKVNLIPVIAKADTLTKD 174 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh----ccccccceeeccccCCHH
Confidence 1 1112222 267889999987652 111111 1112222 466789999999976532
Q ss_pred C--CCHHHHHHHHHHcCCeEEEEecCC
Q 048709 150 A--VSAEDVVEFAEDQGLFFSEASALN 174 (203)
Q Consensus 150 ~--~~~~~~~~~~~~~~~~~~~~sa~~ 174 (203)
+ .-...+.+.+..+.+++|....-.
T Consensus 175 El~~~K~~I~~~i~~~nI~vf~fp~~~ 201 (366)
T KOG2655|consen 175 ELNQFKKRIRQDIEEHNIKVFDFPTDE 201 (366)
T ss_pred HHHHHHHHHHHHHHHcCcceecCCCCc
Confidence 1 223345555667788777665543
No 319
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=6.4e-10 Score=81.08 Aligned_cols=163 Identities=17% Similarity=0.185 Sum_probs=97.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh---hhhHhhhcCCcE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR---AVTSAYYRGALG 103 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---~~~~~~~~~~d~ 103 (203)
.+.+|+++|...|||||+.+..+....+.+. -....+.....-.+.+.-+.+.+||.||+-.+- .-.+..++++.+
T Consensus 26 ~kp~ilLMG~rRsGKsSI~KVVFhkMsPneT-lflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gA 104 (347)
T KOG3887|consen 26 MKPRILLMGLRRSGKSSIQKVVFHKMSPNET-LFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGA 104 (347)
T ss_pred CCceEEEEeecccCcchhhheeeeccCCCce-eEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCe
Confidence 4466999999999999998877665433221 111111111122233455789999999975432 124567899999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCcccC-C---------CHHHHHHH-HHHcCCeEEEE
Q 048709 104 AVVVYDITKRQSFDHVARGVEELRAHAD--SSIRIILIGNKSDLVDMWA-V---------SAEDVVEF-AEDQGLFFSEA 170 (203)
Q Consensus 104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~-~---------~~~~~~~~-~~~~~~~~~~~ 170 (203)
+++|+|+.+. ..+.+.++...+.+... +++.+-+.+.|.|...... + ..+++... .....+.++.+
T Consensus 105 LifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LT 183 (347)
T KOG3887|consen 105 LIFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLT 183 (347)
T ss_pred EEEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEe
Confidence 9999999873 22333333333333322 7788999999999865311 1 11111111 11223456667
Q ss_pred ecCCCCCHHHHHHHHHHHHHHh
Q 048709 171 SALNGDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 171 sa~~~~~i~~~~~~i~~~~~~~ 192 (203)
|.. ..+|-+.|..+++++..+
T Consensus 184 SIy-DHSIfEAFSkvVQkLipq 204 (347)
T KOG3887|consen 184 SIY-DHSIFEAFSKVVQKLIPQ 204 (347)
T ss_pred eec-chHHHHHHHHHHHHHhhh
Confidence 765 456777888888887653
No 320
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.15 E-value=1.8e-10 Score=92.49 Aligned_cols=166 Identities=19% Similarity=0.303 Sum_probs=123.1
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 104 (203)
.-..+|++|||..++|||+|+.+++.+.+.....+. ......++..++...-+.+.|.+|.. ...|...+|++
T Consensus 27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e--~~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdav 99 (749)
T KOG0705|consen 27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPE--GGRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAV 99 (749)
T ss_pred ccchhheeeeecccCCceeeeeeeccceeccccCCc--CccceeeEEeeccceEeeeecccCCc-----hhhhhhhccce
Confidence 345799999999999999999999998887665333 23344566677777778888888722 34577889999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCC--cccCCCHHHHHHHHHH-cCCeEEEEecCCCCCHHH
Q 048709 105 VVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLV--DMWAVSAEDVVEFAED-QGLFFSEASALNGDNVDT 180 (203)
Q Consensus 105 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i~~ 180 (203)
||||.+.+..+++.+..+...+..... ..+|.++++++.-.. ..+.+...+..+++.. ..+.+|++.+.+|.++..
T Consensus 100 Ifvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~r 179 (749)
T KOG0705|consen 100 VFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVER 179 (749)
T ss_pred EEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHH
Confidence 999999999999888766655543333 567888888764332 2234555555555544 457899999999999999
Q ss_pred HHHHHHHHHHHhhcccc
Q 048709 181 AFFRLLQEIYALSKKEL 197 (203)
Q Consensus 181 ~~~~i~~~~~~~~~~~~ 197 (203)
+|+.+..++...+++.+
T Consensus 180 vf~~~~~k~i~~~~~qq 196 (749)
T KOG0705|consen 180 VFQEVAQKIVQLRKYQQ 196 (749)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 99999999988766544
No 321
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=6.4e-10 Score=87.53 Aligned_cols=153 Identities=16% Similarity=0.099 Sum_probs=105.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCc---cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFC---FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
-|+..|.---|||||+.++++...+ +......+.+........++ ....|+|.||.+++-...-.-+...|.+++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 4778899999999999999986543 33344555555544444433 368899999999887777777888999999
Q ss_pred EEeCCC---HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC--CCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Q 048709 107 VYDITK---RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA--VSAEDVVEFAEDQGLFFSEASALNGDNVDTA 181 (203)
Q Consensus 107 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 181 (203)
|+++++ .++.+.+. .++.+. ..-.++|+||+|..+... ...+++.+.......+++.+|+++|.||+++
T Consensus 80 vV~~deGl~~qtgEhL~-iLdllg-----i~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~L 153 (447)
T COG3276 80 VVAADEGLMAQTGEHLL-ILDLLG-----IKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEEL 153 (447)
T ss_pred EEeCccCcchhhHHHHH-HHHhcC-----CCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHH
Confidence 999975 34444331 112211 122589999999986421 1112233333334467899999999999999
Q ss_pred HHHHHHHHH
Q 048709 182 FFRLLQEIY 190 (203)
Q Consensus 182 ~~~i~~~~~ 190 (203)
.+.|.+..-
T Consensus 154 k~~l~~L~~ 162 (447)
T COG3276 154 KNELIDLLE 162 (447)
T ss_pred HHHHHHhhh
Confidence 999998873
No 322
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.15 E-value=2.3e-09 Score=78.72 Aligned_cols=155 Identities=24% Similarity=0.207 Sum_probs=99.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhh-------hhHhhhc
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRA-------VTSAYYR 99 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~~ 99 (203)
..-+|+++|.|.+|||||+-.++.-.........++.+.-.-.+.+++. .+++.|.||...-.+ ..-+..+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEEee
Confidence 3579999999999999999999886655444455555555556666664 468999999433221 2234567
Q ss_pred CCcEEEEEEeCCCHHHHH-HHHHHHHHHHhhcC-----------------------------------------------
Q 048709 100 GALGAVVVYDITKRQSFD-HVARGVEELRAHAD----------------------------------------------- 131 (203)
Q Consensus 100 ~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~----------------------------------------------- 131 (203)
.+|.+++|.|++..+... .+...++.+.....
T Consensus 139 taDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl 218 (364)
T KOG1486|consen 139 TADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVL 218 (364)
T ss_pred cccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEE
Confidence 889999999998754333 22333333322211
Q ss_pred ------------------CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 048709 132 ------------------SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190 (203)
Q Consensus 132 ------------------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~~ 190 (203)
.-++++-|-||+| +++.+++-.+++....-++ |+.-+.|++.+++.|-+.+.
T Consensus 219 ~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID-----~vs~eevdrlAr~PnsvVi--SC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 219 FREDCTVDDFIDVIEGNRVYIKCLYVYNKID-----QVSIEEVDRLARQPNSVVI--SCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred EecCCChHHHHHHHhccceEEEEEEEeeccc-----eecHHHHHHHhcCCCcEEE--EeccccCHHHHHHHHHHHhc
Confidence 1245555566665 3456667677766665554 66666788877777766553
No 323
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=1e-09 Score=92.79 Aligned_cols=119 Identities=18% Similarity=0.171 Sum_probs=81.3
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcC--CCcc-CCC-------------CCcceeeEEEEEEECCE-EEEEEEEeCCCc
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKN--EFCF-DSK-------------STIGVEFQTRTVTINSK-IIKAQIWDTAGQ 87 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~--~~~~-~~~-------------~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~ 87 (203)
.....+|+++|+-.+|||||..+|+.. .... ... ..-+++.......+... .+.++++||||+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 456689999999999999999998642 1110 000 01122233333333223 478999999999
Q ss_pred hhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147 (203)
Q Consensus 88 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 147 (203)
.+|..-....++-+|++++|+|+...-..+.-.-| ....+ .++|.++++||+|...
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~-rqa~~---~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVW-RQADK---YGVPRILFVNKMDRLG 142 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHH-HHHhh---cCCCeEEEEECccccc
Confidence 99998888889999999999999874332222223 33233 4899999999999865
No 324
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.13 E-value=6.4e-10 Score=89.27 Aligned_cols=113 Identities=17% Similarity=0.228 Sum_probs=80.3
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCH----------HHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCC
Q 048709 77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKR----------QSFDHVARGVEELRAHAD-SSIRIILIGNKSDL 145 (203)
Q Consensus 77 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~ 145 (203)
..+.++|++|+...+.-|..++.+++++|||+++++. ..+.+...++..+..... .+.|+++++||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 4679999999999889999999999999999998752 223333445555544433 68999999999997
Q ss_pred Ccc-----------------c-CCCHHHHHHHHHH------------cCCeEEEEecCCCCCHHHHHHHHHHHH
Q 048709 146 VDM-----------------W-AVSAEDVVEFAED------------QGLFFSEASALNGDNVDTAFFRLLQEI 189 (203)
Q Consensus 146 ~~~-----------------~-~~~~~~~~~~~~~------------~~~~~~~~sa~~~~~i~~~~~~i~~~~ 189 (203)
... . ....+.+..|... ..+.+..|+|.+..++..+|+.+.+.|
T Consensus 316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 421 0 1345666666542 223566789999999999998887653
No 325
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.07 E-value=3.7e-09 Score=77.13 Aligned_cols=155 Identities=15% Similarity=0.204 Sum_probs=87.9
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccC---------CCCCcceeeEEEEEEECCEEEEEEEEeCCCchh-------
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFD---------SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER------- 89 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~------- 89 (203)
...++|+|||.+|.|||||+|.|+....... .+.|......+..+.-++...+++++||||...
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc 123 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC 123 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence 3579999999999999999999987544321 112222223333334467778899999999211
Q ss_pred -----------hhhh--------hHhhh--cCCcEEEEEEeCCCHHHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709 90 -----------YRAV--------TSAYY--RGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147 (203)
Q Consensus 90 -----------~~~~--------~~~~~--~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 147 (203)
|... .+..+ ..++++++.+..+.. ++.-+ ..++..+.+ -+-++.|+-|.|-..
T Consensus 124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~----vvNvvPVIakaDtlT 198 (336)
T KOG1547|consen 124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTE----VVNVVPVIAKADTLT 198 (336)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhh----hheeeeeEeeccccc
Confidence 1111 11112 245677777777642 22222 122233322 334788888999542
Q ss_pred --ccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709 148 --MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (203)
Q Consensus 148 --~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 185 (203)
.+..-.+.+++-...+++.+++-.+.+-..=+..++.-
T Consensus 199 leEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~k 238 (336)
T KOG1547|consen 199 LEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDK 238 (336)
T ss_pred HHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHHH
Confidence 12222344555566788888887766554444344333
No 326
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=2.5e-09 Score=84.11 Aligned_cols=130 Identities=18% Similarity=0.166 Sum_probs=87.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHh--cCCCc-----------cCC-------CCCcceeeEEEEEEECCEEEEEEEEeCCC
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFT--KNEFC-----------FDS-------KSTIGVEFQTRTVTINSKIIKAQIWDTAG 86 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~--~~~~~-----------~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 86 (203)
.....+|+-.|.+|||||-..|+ ++-+. ... ...-|+...+..+.++.....++|.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 34678999999999999999874 22110 000 01123445556666777778899999999
Q ss_pred chhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHH
Q 048709 87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAED 162 (203)
Q Consensus 87 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 162 (203)
++.|..-.-..+..+|.++.|+|+...-.-+. .++++.+.. +++|++-++||.|.... -+.+.+.+..+.
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-~KLfeVcrl---R~iPI~TFiNKlDR~~r--dP~ELLdEiE~~ 160 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-LKLFEVCRL---RDIPIFTFINKLDREGR--DPLELLDEIEEE 160 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccHHH-HHHHHHHhh---cCCceEEEeeccccccC--ChHHHHHHHHHH
Confidence 99888766666888999999999987433222 244444333 68999999999998763 233434444333
No 327
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.06 E-value=7.3e-10 Score=84.23 Aligned_cols=55 Identities=20% Similarity=0.234 Sum_probs=39.9
Q ss_pred CcEEEEEeCCCCCcccCCCHHHHHHHHHH--cCCeEEEEecCCCCCHHHHHHHHHHH
Q 048709 134 IRIILIGNKSDLVDMWAVSAEDVVEFAED--QGLFFSEASALNGDNVDTAFFRLLQE 188 (203)
Q Consensus 134 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~~~~i~~~~~~i~~~ 188 (203)
.+-++|+||+|+........+...+..+. ...+++.+|+++|.|++++++||.+.
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 44699999999975221223344444433 45789999999999999999999764
No 328
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.06 E-value=2.1e-09 Score=77.94 Aligned_cols=94 Identities=21% Similarity=0.140 Sum_probs=66.4
Q ss_pred hhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHH-----HHcC
Q 048709 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFA-----EDQG 164 (203)
Q Consensus 90 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~ 164 (203)
+..++..+++.+|++++|+|++++.. .|...+... ..+.|+++|+||+|+... ....+.+..+. ...+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~-~~~~~~ilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF-GGNNPVILVGNKIDLLPK-DKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh-cCCCcEEEEEEchhcCCC-CCCHHHHHHHHHHHHHhhcC
Confidence 57788889999999999999987542 111222111 246799999999998653 33344444443 2233
Q ss_pred C---eEEEEecCCCCCHHHHHHHHHHHHH
Q 048709 165 L---FFSEASALNGDNVDTAFFRLLQEIY 190 (203)
Q Consensus 165 ~---~~~~~sa~~~~~i~~~~~~i~~~~~ 190 (203)
. +++.+||++|.|++++++.+.+.+.
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 2 6899999999999999999988764
No 329
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.03 E-value=1.9e-09 Score=75.69 Aligned_cols=96 Identities=13% Similarity=0.045 Sum_probs=65.8
Q ss_pred hhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEE
Q 048709 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSE 169 (203)
Q Consensus 90 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (203)
++.+.+..++++|++++|+|++++...... .+...+. ..+.|+++|+||+|+.... ..+....+....+.+++.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~---~~~~p~iiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVL---ELGKKLLIVLNKADLVPKE--VLEKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHH---hCCCcEEEEEEhHHhCCHH--HHHHHHHHHHhCCCcEEE
Confidence 456677788899999999999875432221 1212221 1368999999999986421 112222333445678999
Q ss_pred EecCCCCCHHHHHHHHHHHHHH
Q 048709 170 ASALNGDNVDTAFFRLLQEIYA 191 (203)
Q Consensus 170 ~sa~~~~~i~~~~~~i~~~~~~ 191 (203)
+||+++.|++++++.+.+.+..
T Consensus 76 iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 76 VSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred EEccccccHHHHHHHHHHHHhh
Confidence 9999999999999999877653
No 330
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=1.7e-09 Score=81.07 Aligned_cols=139 Identities=22% Similarity=0.214 Sum_probs=92.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC----------C------CccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhh
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKN----------E------FCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY 90 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~----------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 90 (203)
..++|..+|...-|||||..+++.- . .+.+ ..-+++..+..+.++-....+-..|+||+..|
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeE--k~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEE--KARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchH--hhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 4599999999999999999987541 0 1111 22334444444455444556788999999888
Q ss_pred hhhhHhhhcCCcEEEEEEeCCCH---HHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCcccC---CCHHHHHHHHHHc
Q 048709 91 RAVTSAYYRGALGAVVVYDITKR---QSFDHVARGVEELRAHADSSIR-IILIGNKSDLVDMWA---VSAEDVVEFAEDQ 163 (203)
Q Consensus 91 ~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~ 163 (203)
-...-.-..+.|+.|+|+++.+. ++-+.+ ....+ -++| +++++||+|+.++.+ .-..++++++..+
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGpmPqTrEHi----Llarq---vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y 161 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGPMPQTREHI----LLARQ---VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEY 161 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCCCCcchhhh----hhhhh---cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHc
Confidence 76666667788999999999983 333322 11111 3554 788899999987433 2234677788887
Q ss_pred CC-----eEEEEecCC
Q 048709 164 GL-----FFSEASALN 174 (203)
Q Consensus 164 ~~-----~~~~~sa~~ 174 (203)
++ |++.-||..
T Consensus 162 ~f~gd~~Pii~gSal~ 177 (394)
T COG0050 162 GFPGDDTPIIRGSALK 177 (394)
T ss_pred CCCCCCcceeechhhh
Confidence 75 577777653
No 331
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=2.4e-09 Score=88.01 Aligned_cols=118 Identities=20% Similarity=0.257 Sum_probs=82.0
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCC-----------------CCcceeeEEEEEEE---CCEEEEEEEEeC
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSK-----------------STIGVEFQTRTVTI---NSKIIKAQIWDT 84 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~-----------------~~~~~~~~~~~~~~---~~~~~~~~l~D~ 84 (203)
.....+++++|+-++|||+|+..|.....+..+. +..++.....++.. .++.+-+++.||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 3457899999999999999999997654322111 11112222222222 466778899999
Q ss_pred CCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 048709 85 AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV 146 (203)
Q Consensus 85 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 146 (203)
||+..|..-....++.+|++++|+|+.+.-.+..- +.+... ...+.|+++|+||+|..
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~ikha---iq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RIIKHA---IQNRLPIVVVINKVDRL 262 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HHHHHH---HhccCcEEEEEehhHHH
Confidence 99998887778889999999999999876544332 222222 22589999999999964
No 332
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.99 E-value=1.4e-09 Score=75.02 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=40.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCc
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 87 (203)
+++++|.+|+|||||+|+|.+....... ...+.+.....+.+++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVS-ATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCcccceEEEEeCC---CEEEEECCCc
Confidence 8999999999999999999988764322 3333444455555554 4689999994
No 333
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.98 E-value=1.6e-09 Score=77.05 Aligned_cols=57 Identities=26% Similarity=0.445 Sum_probs=41.8
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCC
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG 86 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 86 (203)
...++++++|.||+|||||+|+|.+....... +..+.+.....+..+. .+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~-~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVG-ATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceec-CCCCeEcceEEEEeCC---CEEEEECcC
Confidence 44589999999999999999999987664333 3344444445554442 578999998
No 334
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.97 E-value=2.2e-09 Score=75.39 Aligned_cols=56 Identities=23% Similarity=0.304 Sum_probs=39.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCC
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG 86 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 86 (203)
..++|+++|.+|+|||||+|+|.+....... +..+.+.....+..+. .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVA-PIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeC-CCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 4588999999999999999999987654333 3344444444444332 367999999
No 335
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.95 E-value=5.6e-10 Score=80.96 Aligned_cols=126 Identities=17% Similarity=0.183 Sum_probs=87.8
Q ss_pred ECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC----------HHHHHHHHHHHHHHHhhcC-CCCcEEEEE
Q 048709 72 INSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITK----------RQSFDHVARGVEELRAHAD-SSIRIILIG 140 (203)
Q Consensus 72 ~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~-~~~p~ivv~ 140 (203)
++-..+.+.+.|.+|+..-+.-|-.++.++-.++|++..+. ...+++...++..+..... .+.++|+.+
T Consensus 194 fdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFL 273 (359)
T KOG0085|consen 194 FDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL 273 (359)
T ss_pred cchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEe
Confidence 34445678899999998888888888998888888777654 3344444555566655555 778999999
Q ss_pred eCCCCCcc----------------cCCCHHHHHHHHHHcC----------CeEEEEecCCCCCHHHHHHHHHHHHHHhhc
Q 048709 141 NKSDLVDM----------------WAVSAEDVVEFAEDQG----------LFFSEASALNGDNVDTAFFRLLQEIYALSK 194 (203)
Q Consensus 141 nK~D~~~~----------------~~~~~~~~~~~~~~~~----------~~~~~~sa~~~~~i~~~~~~i~~~~~~~~~ 194 (203)
||.|+.+. .+...+.+++|....- +.-..+.|.+..||+.+|..+.+.+....-
T Consensus 274 NKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~L 353 (359)
T KOG0085|consen 274 NKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL 353 (359)
T ss_pred chhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhh
Confidence 99998642 2344455566654321 123446788899999999999888877654
Q ss_pred ccc
Q 048709 195 KEL 197 (203)
Q Consensus 195 ~~~ 197 (203)
+.+
T Consensus 354 kE~ 356 (359)
T KOG0085|consen 354 KEY 356 (359)
T ss_pred Hhh
Confidence 443
No 336
>PRK12289 GTPase RsgA; Reviewed
Probab=98.94 E-value=5.4e-09 Score=82.28 Aligned_cols=92 Identities=15% Similarity=0.117 Sum_probs=67.5
Q ss_pred hhhHhhhcCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEE
Q 048709 92 AVTSAYYRGALGAVVVYDITKRQ-SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEA 170 (203)
Q Consensus 92 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (203)
.+.+..+.++|.+++|+|+.++. ....+.+|+..+.. .++|+++|+||+|+....+ .+...+....++++++.+
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~i 155 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLFI 155 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEEE
Confidence 34455689999999999998765 44455666654432 5789999999999965211 123334445678899999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q 048709 171 SALNGDNVDTAFFRLLQE 188 (203)
Q Consensus 171 sa~~~~~i~~~~~~i~~~ 188 (203)
||+++.|++++++.+...
T Consensus 156 SA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 156 SVETGIGLEALLEQLRNK 173 (352)
T ss_pred EcCCCCCHHHHhhhhccc
Confidence 999999999999888654
No 337
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.93 E-value=9.7e-10 Score=79.67 Aligned_cols=74 Identities=20% Similarity=0.316 Sum_probs=47.3
Q ss_pred CCCCccccccccccCCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCcc-------CCCCCcceeeEEEEEEECCEEEE
Q 048709 6 SGDGTDHRHQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCF-------DSKSTIGVEFQTRTVTINSKIIK 78 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 78 (203)
.+.|++++...+....+ ...+++++|.+|+|||||+|+|.+..... ...+..+++.....+.++. .
T Consensus 109 ~~~gi~eL~~~l~~~l~----~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~ 181 (190)
T cd01855 109 KGWGVEELINAIKKLAK----KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---G 181 (190)
T ss_pred CCCCHHHHHHHHHHHhh----cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---C
Confidence 34445555555544443 34689999999999999999999754311 1112334444455555543 4
Q ss_pred EEEEeCCC
Q 048709 79 AQIWDTAG 86 (203)
Q Consensus 79 ~~l~D~~g 86 (203)
+.++||||
T Consensus 182 ~~~~DtPG 189 (190)
T cd01855 182 KKLYDTPG 189 (190)
T ss_pred CEEEeCcC
Confidence 68999999
No 338
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.90 E-value=2.2e-09 Score=75.27 Aligned_cols=75 Identities=25% Similarity=0.213 Sum_probs=48.4
Q ss_pred CCCccccccccccCCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCC
Q 048709 7 GDGTDHRHQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG 86 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 86 (203)
+.|.++....+.+..+. .....+++++|.+|+||||++|++.+...... .++.+.+.....+..++ .+.+|||||
T Consensus 81 ~~gi~~L~~~l~~~~~~-~~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~-~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 81 RLGTKILRRTIKELAKI-DGKEGKVGVVGYPNVGKSSIINALKGRHSAST-SPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred cccHHHHHHHHHHHHhh-cCCCcEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 34455555555544442 23568899999999999999999997654332 24544443333333333 578999998
No 339
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.90 E-value=9.1e-09 Score=79.23 Aligned_cols=88 Identities=19% Similarity=0.089 Sum_probs=67.4
Q ss_pred HhhhcCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecC
Q 048709 95 SAYYRGALGAVVVYDITKRQ-SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASAL 173 (203)
Q Consensus 95 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 173 (203)
...+.++|.+++|+|+.++. ++..+.+|+..+.. .++|+++|+||+|+.... .......+....+.+++.+||+
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA~ 147 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSAK 147 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEECC
Confidence 44588999999999999887 77788787776554 468999999999996531 1122233345578899999999
Q ss_pred CCCCHHHHHHHHHH
Q 048709 174 NGDNVDTAFFRLLQ 187 (203)
Q Consensus 174 ~~~~i~~~~~~i~~ 187 (203)
++.|+++++..+..
T Consensus 148 ~g~gi~~L~~~L~~ 161 (287)
T cd01854 148 TGEGLDELREYLKG 161 (287)
T ss_pred CCccHHHHHhhhcc
Confidence 99999998887654
No 340
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.89 E-value=7.4e-09 Score=79.06 Aligned_cols=86 Identities=16% Similarity=0.127 Sum_probs=68.0
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCE---------------EEEEEEEeCCCchh-
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSK---------------IIKAQIWDTAGQER- 89 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~- 89 (203)
.+.+++++||.|++|||||+|+|+.....+...|..++++....+.+... ...++++|++|...
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 36799999999999999999999999988888888888888887766322 35789999998422
Q ss_pred ------hhhhhHhhhcCCcEEEEEEeCC
Q 048709 90 ------YRAVTSAYYRGALGAVVVYDIT 111 (203)
Q Consensus 90 ------~~~~~~~~~~~~d~~i~v~d~~ 111 (203)
...-.-..++.+|+++-|+++.
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEec
Confidence 2223345678899999999875
No 341
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.88 E-value=2.1e-09 Score=82.40 Aligned_cols=58 Identities=19% Similarity=0.351 Sum_probs=42.0
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCc
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 87 (203)
...++++++|.||+|||||+|+|.+....... ...+.+.....+.++. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVG-NRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeecceEEEEeCC---CEEEEECCCc
Confidence 34689999999999999999999987644332 3334444445555543 4689999996
No 342
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.88 E-value=6.4e-09 Score=77.43 Aligned_cols=155 Identities=15% Similarity=0.091 Sum_probs=91.6
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCC-CCCcceeeEEEEEEECCEEEEEEEEeCCC----------chhhhh
Q 048709 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDS-KSTIGVEFQTRTVTINSKIIKAQIWDTAG----------QERYRA 92 (203)
Q Consensus 24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~ 92 (203)
+.....+++++|.+++|||+|+|.++..+..... .+..+.+ +.+..-..+-.+.+.|.|| ...+..
T Consensus 132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~T---q~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKT---QAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred CCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccc---eeeeeeeccceEEEEecCCcccccCCccCcchHhH
Confidence 3456699999999999999999999876543222 1233322 3333322334678999999 233445
Q ss_pred hhHhhhcCCc---EEEEEEeCCCHH--HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC-----------CCHHHH
Q 048709 93 VTSAYYRGAL---GAVVVYDITKRQ--SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA-----------VSAEDV 156 (203)
Q Consensus 93 ~~~~~~~~~d---~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-----------~~~~~~ 156 (203)
+...|+..-+ -+++++|++.+- .-.....| ....++|..+|+||+|...... ...+.+
T Consensus 209 ~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~------~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l 282 (320)
T KOG2486|consen 209 FTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAW------LGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGL 282 (320)
T ss_pred hHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHH------HhhcCCCeEEeeehhhhhhhccccccCccccceeehhhc
Confidence 5555654433 245556665421 11111222 2226899999999999753210 111222
Q ss_pred HHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 048709 157 VEFAEDQGLFFSEASALNGDNVDTAFFRLLQ 187 (203)
Q Consensus 157 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 187 (203)
.+-......|++.+|+.++.|+++++-.|.+
T Consensus 283 ~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 283 IRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred cccceeccCCceeeecccccCceeeeeehhh
Confidence 2222233457788999999999987765554
No 343
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.87 E-value=1.2e-08 Score=80.20 Aligned_cols=83 Identities=17% Similarity=0.007 Sum_probs=62.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC-ccCCCCCcceeeEEEEEEECCEE---------------EEEEEEeCCCchh---
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEF-CFDSKSTIGVEFQTRTVTINSKI---------------IKAQIWDTAGQER--- 89 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~D~~g~~~--- 89 (203)
++++++|.|++|||||+++|++... ...+.|..+..+....+.+.+.. ..+.+.|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7999999999999999999999887 55555666666666666664431 3678999999432
Q ss_pred ----hhhhhHhhhcCCcEEEEEEeCC
Q 048709 90 ----YRAVTSAYYRGALGAVVVYDIT 111 (203)
Q Consensus 90 ----~~~~~~~~~~~~d~~i~v~d~~ 111 (203)
.....-..++.+|++++|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2223445688999999999984
No 344
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.86 E-value=7.6e-09 Score=76.42 Aligned_cols=122 Identities=14% Similarity=0.154 Sum_probs=78.3
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCH-------HHHHHHH---HHHHHHHhhcC-CCCcEEEEEeCCC
Q 048709 76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKR-------QSFDHVA---RGVEELRAHAD-SSIRIILIGNKSD 144 (203)
Q Consensus 76 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~-------~s~~~~~---~~~~~~~~~~~-~~~p~ivv~nK~D 144 (203)
.+.|+++|.+|+...+.-|-.++.++.++|||+..++. .+-..++ .++..+.+... ..+.+|+.+||.|
T Consensus 201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqD 280 (379)
T KOG0099|consen 201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 280 (379)
T ss_pred ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHH
Confidence 46789999999998888899999999999999988751 1112222 23333333222 4577999999999
Q ss_pred CCcc------------------------------cCCCHHHHHHHHH--------H-----cCCeEEEEecCCCCCHHHH
Q 048709 145 LVDM------------------------------WAVSAEDVVEFAE--------D-----QGLFFSEASALNGDNVDTA 181 (203)
Q Consensus 145 ~~~~------------------------------~~~~~~~~~~~~~--------~-----~~~~~~~~sa~~~~~i~~~ 181 (203)
+... +....-..+-|.+ . +.+.+.++.|.+-.+|+.+
T Consensus 281 llaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrV 360 (379)
T KOG0099|consen 281 LLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV 360 (379)
T ss_pred HHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHH
Confidence 8521 0000001111111 1 1234556778899999999
Q ss_pred HHHHHHHHHHhhcccc
Q 048709 182 FFRLLQEIYALSKKEL 197 (203)
Q Consensus 182 ~~~i~~~~~~~~~~~~ 197 (203)
|+...+.|..+.-+..
T Consensus 361 FnDcrdiIqr~hlrqy 376 (379)
T KOG0099|consen 361 FNDCRDIIQRMHLRQY 376 (379)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9998888877654443
No 345
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=5.2e-08 Score=79.26 Aligned_cols=144 Identities=13% Similarity=0.104 Sum_probs=88.7
Q ss_pred ccCCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhh
Q 048709 18 DKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAY 97 (203)
Q Consensus 18 ~~~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~ 97 (203)
..+.|...+.++-++|+|+||+||||||++|..+-.........+ -...+.++..++++.++|. ..+.+ -..
T Consensus 59 vdrtp~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G-----PiTvvsgK~RRiTflEcp~--Dl~~m-iDv 130 (1077)
T COG5192 59 VDRTPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG-----PITVVSGKTRRITFLECPS--DLHQM-IDV 130 (1077)
T ss_pred ccCCcccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC-----ceEEeecceeEEEEEeChH--HHHHH-HhH
Confidence 345566677889999999999999999999876432111111111 1112456778899999993 33333 345
Q ss_pred hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCcccCCCHHHHHHHH------H-HcCCeEEE
Q 048709 98 YRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR-IILIGNKSDLVDMWAVSAEDVVEFA------E-DQGLFFSE 169 (203)
Q Consensus 98 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~------~-~~~~~~~~ 169 (203)
.+-+|.+++++|.+-.-.++.+ .+++.+.. .+.| ++.|+|+.|+.... .....++.-+ . ..|+.+|.
T Consensus 131 aKIaDLVlLlIdgnfGfEMETm-EFLnil~~---HGmPrvlgV~ThlDlfk~~-stLr~~KKrlkhRfWtEiyqGaKlFy 205 (1077)
T COG5192 131 AKIADLVLLLIDGNFGFEMETM-EFLNILIS---HGMPRVLGVVTHLDLFKNP-STLRSIKKRLKHRFWTEIYQGAKLFY 205 (1077)
T ss_pred HHhhheeEEEeccccCceehHH-HHHHHHhh---cCCCceEEEEeecccccCh-HHHHHHHHHHhhhHHHHHcCCceEEE
Confidence 6778999999999864333332 34444443 3455 77889999997632 1222222211 1 23677888
Q ss_pred EecCC
Q 048709 170 ASALN 174 (203)
Q Consensus 170 ~sa~~ 174 (203)
+|...
T Consensus 206 lsgV~ 210 (1077)
T COG5192 206 LSGVE 210 (1077)
T ss_pred ecccc
Confidence 88654
No 346
>PRK12288 GTPase RsgA; Reviewed
Probab=98.83 E-value=2.3e-08 Score=78.66 Aligned_cols=88 Identities=16% Similarity=0.142 Sum_probs=67.0
Q ss_pred hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC-CCHHHHHHHHHHcCCeEEEEecCCCC
Q 048709 98 YRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA-VSAEDVVEFAEDQGLFFSEASALNGD 176 (203)
Q Consensus 98 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~ 176 (203)
..++|.+++|++.....++..+..|+..+.. .++|+++|+||+|+..... ....+..+.....+++++++||+++.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 4679999999999888888888888765432 4689999999999975321 11223334445678899999999999
Q ss_pred CHHHHHHHHHHH
Q 048709 177 NVDTAFFRLLQE 188 (203)
Q Consensus 177 ~i~~~~~~i~~~ 188 (203)
|++++++.+...
T Consensus 195 GideL~~~L~~k 206 (347)
T PRK12288 195 GLEELEAALTGR 206 (347)
T ss_pred CHHHHHHHHhhC
Confidence 999999888653
No 347
>PRK00098 GTPase RsgA; Reviewed
Probab=98.83 E-value=1.7e-08 Score=78.09 Aligned_cols=86 Identities=23% Similarity=0.203 Sum_probs=63.8
Q ss_pred hhcCCcEEEEEEeCCCHHHHHH-HHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCC
Q 048709 97 YYRGALGAVVVYDITKRQSFDH-VARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNG 175 (203)
Q Consensus 97 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 175 (203)
...++|.+++|+|+.++..... +..|+..+.. .++|+++|+||+|+.+... ..++..+.....+++++++||+++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4689999999999988754433 4566655443 4789999999999964211 223344555667889999999999
Q ss_pred CCHHHHHHHHH
Q 048709 176 DNVDTAFFRLL 186 (203)
Q Consensus 176 ~~i~~~~~~i~ 186 (203)
.|++++++.+.
T Consensus 153 ~gi~~L~~~l~ 163 (298)
T PRK00098 153 EGLDELKPLLA 163 (298)
T ss_pred ccHHHHHhhcc
Confidence 99999988764
No 348
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.82 E-value=1.7e-08 Score=77.74 Aligned_cols=58 Identities=21% Similarity=0.371 Sum_probs=42.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCc
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 87 (203)
...++++++|.||+|||||+|+|.+....... +..+.+.....+..+. .+.++||||.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTG-NRPGVTKAQQWIKLGK---GLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccC-CCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence 35689999999999999999999987754332 3444444445555443 4789999995
No 349
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.82 E-value=3.2e-08 Score=78.53 Aligned_cols=95 Identities=22% Similarity=0.288 Sum_probs=69.6
Q ss_pred chhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHH----HHHH
Q 048709 87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVE----FAED 162 (203)
Q Consensus 87 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~~ 162 (203)
.+.|..+...+...++++++|+|+.+... .|...+.+.. .+.|+++|+||+|+... ....+.+.+ ++..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~-~~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFV-GGNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHh-CCCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence 56788888888999999999999977532 2333333332 25789999999998653 344445544 3556
Q ss_pred cCC---eEEEEecCCCCCHHHHHHHHHHH
Q 048709 163 QGL---FFSEASALNGDNVDTAFFRLLQE 188 (203)
Q Consensus 163 ~~~---~~~~~sa~~~~~i~~~~~~i~~~ 188 (203)
.++ .++.+||++|.|++++++.+.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 666 48999999999999999988654
No 350
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.3e-07 Score=78.24 Aligned_cols=144 Identities=15% Similarity=0.127 Sum_probs=84.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCC-CCcce-----------------------------------------
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSK-STIGV----------------------------------------- 63 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~-~~~~~----------------------------------------- 63 (203)
....||++.|..++||||++|+++..++.++.. +++..
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 356999999999999999999997655433321 11110
Q ss_pred -eeEEEEEEECCE-----EEEEEEEeCCCc---hhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCC
Q 048709 64 -EFQTRTVTINSK-----IIKAQIWDTAGQ---ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSI 134 (203)
Q Consensus 64 -~~~~~~~~~~~~-----~~~~~l~D~~g~---~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 134 (203)
......+..+.. .-.+.++|.||. ....+-...+...+|++|+|..+.+.-+... .+++..... .+.
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~---~Kp 262 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSE---EKP 262 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhc---cCC
Confidence 000011111111 015678999994 3445556678899999999999987544333 233333332 233
Q ss_pred cEEEEEeCCCCCcccCCCHHHHHHHHHHcCC--------eEEEEecC
Q 048709 135 RIILIGNKSDLVDMWAVSAEDVVEFAEDQGL--------FFSEASAL 173 (203)
Q Consensus 135 p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~sa~ 173 (203)
-+.++.||+|....++.-.++++........ .++.+|++
T Consensus 263 niFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 263 NIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred cEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence 4667777899865434344555554333322 47788854
No 351
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.80 E-value=1.8e-08 Score=71.81 Aligned_cols=58 Identities=22% Similarity=0.293 Sum_probs=41.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCc
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 87 (203)
+..++++++|.+|+|||||+|+|.+....... +..+.+.....+.++ ..+.+|||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVG-NKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 34589999999999999999999987764222 333344444445444 35789999994
No 352
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.80 E-value=1.8e-07 Score=73.94 Aligned_cols=159 Identities=19% Similarity=0.216 Sum_probs=91.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC-----------------CCccCC----CCCcceeeE---EEEEEE-CCEEEEEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKN-----------------EFCFDS----KSTIGVEFQ---TRTVTI-NSKIIKAQI 81 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~-----------------~~~~~~----~~~~~~~~~---~~~~~~-~~~~~~~~l 81 (203)
-.+=|+|||+..+|||||+++|... +.+.+. .-|+...+. ...+.+ ++..+++.+
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 4588999999999999999998442 111111 011111111 122333 567789999
Q ss_pred EeCCCc-------------------hhhhhhh---Hh-------hh--cCCcEEEEEEeCCC----HHHHHHH-HHHHHH
Q 048709 82 WDTAGQ-------------------ERYRAVT---SA-------YY--RGALGAVVVYDITK----RQSFDHV-ARGVEE 125 (203)
Q Consensus 82 ~D~~g~-------------------~~~~~~~---~~-------~~--~~~d~~i~v~d~~~----~~s~~~~-~~~~~~ 125 (203)
+||.|. ..|..-. .+ .+ +..-++++.-|.+= ++++..+ .+.++.
T Consensus 96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E 175 (492)
T PF09547_consen 96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE 175 (492)
T ss_pred EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence 999981 0011000 00 01 22335566666542 4555554 344555
Q ss_pred HHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 048709 126 LRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA 191 (203)
Q Consensus 126 ~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~ 191 (203)
+.. -++|+++++|-.+-.. ....+...++..+++++++.+++.. ..-+++...+-+.+++
T Consensus 176 Lk~---igKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~~-l~~~DI~~Il~~vLyE 235 (492)
T PF09547_consen 176 LKE---IGKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCEQ-LREEDITRILEEVLYE 235 (492)
T ss_pred HHH---hCCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehHH-cCHHHHHHHHHHHHhc
Confidence 555 4789999999988655 3345566777889999999998853 2334444444444444
No 353
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.79 E-value=8.9e-09 Score=72.17 Aligned_cols=56 Identities=23% Similarity=0.284 Sum_probs=38.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCcc-CCCCCcceeeEEEEEEECCEEEEEEEEeCCC
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCF-DSKSTIGVEFQTRTVTINSKIIKAQIWDTAG 86 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 86 (203)
....+++++|.+|+|||||+|.|.+..... ...+..+. ....+.++ ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~--~~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTT--SQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCccc--ceEEEEec---CCEEEEECCC
Confidence 356899999999999999999999866422 22222222 22333333 2478999998
No 354
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.73 E-value=2.6e-08 Score=77.81 Aligned_cols=59 Identities=22% Similarity=0.295 Sum_probs=46.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 89 (203)
..++++|+|.|++|||||||+|.+....... +.+|.+.....+..+.. +.++||||.-.
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s-~~PG~Tk~~q~i~~~~~---i~LlDtPGii~ 189 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTS-NRPGTTKGIQWIKLDDG---IYLLDTPGIIP 189 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeC-CCCceecceEEEEcCCC---eEEecCCCcCC
Confidence 4588999999999999999999998874433 55577777777776653 67999999543
No 355
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.68 E-value=9.6e-08 Score=67.07 Aligned_cols=88 Identities=22% Similarity=0.154 Sum_probs=56.5
Q ss_pred hhcCCcEEEEEEeCCCHHH--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCC
Q 048709 97 YYRGALGAVVVYDITKRQS--FDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALN 174 (203)
Q Consensus 97 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 174 (203)
.+..+|++++|+|++++.. ...+..+ +.. ...+.|+++|+||+|+..... ....+..+...+...++.+||+.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~---l~~-~~~~~p~ilVlNKiDl~~~~~-~~~~~~~~~~~~~~~~~~iSa~~ 79 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEY---LKK-EKPHKHLIFVLNKCDLVPTWV-TARWVKILSKEYPTIAFHASINN 79 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHH---HHh-ccCCCCEEEEEEchhcCCHHH-HHHHHHHHhcCCcEEEEEeeccc
Confidence 4678999999999998632 2222222 222 234589999999999964221 11112222222223357899999
Q ss_pred CCCHHHHHHHHHHHH
Q 048709 175 GDNVDTAFFRLLQEI 189 (203)
Q Consensus 175 ~~~i~~~~~~i~~~~ 189 (203)
+.|++++++.+.+.+
T Consensus 80 ~~~~~~L~~~l~~~~ 94 (157)
T cd01858 80 PFGKGSLIQLLRQFS 94 (157)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999998887654
No 356
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=1.4e-07 Score=73.16 Aligned_cols=167 Identities=21% Similarity=0.284 Sum_probs=97.3
Q ss_pred ccCCCCCCC-eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCC----------------CC-------cceeeEEEEEEEC
Q 048709 18 DKMIPDKID-YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSK----------------ST-------IGVEFQTRTVTIN 73 (203)
Q Consensus 18 ~~~~~~~~~-~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~----------------~~-------~~~~~~~~~~~~~ 73 (203)
.++.|.+.. -.++++|+|.-.+|||||+-.|+.++.+.... .| .+.+..-..+.+.
T Consensus 156 VRKvPd~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~ 235 (591)
T KOG1143|consen 156 VRKVPDSQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYA 235 (591)
T ss_pred hhhCCCcccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchh
Confidence 344454433 37999999999999999999887664432211 11 1111111111111
Q ss_pred ----------CEEEEEEEEeCCCchhhhhhhHhhhc--CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEe
Q 048709 74 ----------SKIIKAQIWDTAGQERYRAVTSAYYR--GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGN 141 (203)
Q Consensus 74 ----------~~~~~~~l~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~n 141 (203)
...--+.++|.+|+..|....-.-+. -.|..++|+++.....+..- +-+..+.. .++|+.++++
T Consensus 236 ~~~taEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTr-EHLgl~~A---L~iPfFvlvt 311 (591)
T KOG1143|consen 236 QNMTAEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTR-EHLGLIAA---LNIPFFVLVT 311 (591)
T ss_pred hcccHHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccH-HHHHHHHH---hCCCeEEEEE
Confidence 11224789999998888654332222 23668889998875444332 22222222 4899999999
Q ss_pred CCCCCccc------------------------CCCHHHHHHHHHH----cCCeEEEEecCCCCCHHHHHHHHHHHH
Q 048709 142 KSDLVDMW------------------------AVSAEDVVEFAED----QGLFFSEASALNGDNVDTAFFRLLQEI 189 (203)
Q Consensus 142 K~D~~~~~------------------------~~~~~~~~~~~~~----~~~~~~~~sa~~~~~i~~~~~~i~~~~ 189 (203)
|+|+.... -.+.+++...+++ .-.|+|.+|+..|.|++ ++..++..+
T Consensus 312 K~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~-ll~~fLn~L 386 (591)
T KOG1143|consen 312 KMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLR-LLRTFLNCL 386 (591)
T ss_pred eeccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchh-HHHHHHhhc
Confidence 99997531 0112222222222 22589999999999988 555555544
No 357
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=2.2e-07 Score=72.06 Aligned_cols=120 Identities=17% Similarity=0.212 Sum_probs=76.7
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCC-CCCcceeeEEEEEEE------CCE----------------------
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDS-KSTIGVEFQTRTVTI------NSK---------------------- 75 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~------~~~---------------------- 75 (203)
-+.+.=|+++|.=..||||||+.|+..+++... .+..++++....+.- +|.
T Consensus 55 fd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 55 FDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN 134 (532)
T ss_pred cccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence 445677999999999999999999998876321 122223332222211 111
Q ss_pred -----------EEEEEEEeCCCc-----------hhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCC
Q 048709 76 -----------IIKAQIWDTAGQ-----------ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSS 133 (203)
Q Consensus 76 -----------~~~~~l~D~~g~-----------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 133 (203)
.-++.++||||. ..|.....=|...+|.++++||+-.-+--.+....+..+. +..
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLk---G~E 211 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALK---GHE 211 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhh---CCc
Confidence 025789999992 2344556668899999999999865322222233333333 344
Q ss_pred CcEEEEEeCCCCCc
Q 048709 134 IRIILIGNKSDLVD 147 (203)
Q Consensus 134 ~p~ivv~nK~D~~~ 147 (203)
-.+-||+||.|..+
T Consensus 212 dkiRVVLNKADqVd 225 (532)
T KOG1954|consen 212 DKIRVVLNKADQVD 225 (532)
T ss_pred ceeEEEeccccccC
Confidence 55788999999765
No 358
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.65 E-value=3.1e-08 Score=69.10 Aligned_cols=60 Identities=18% Similarity=0.219 Sum_probs=33.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCc------cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFC------FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR 91 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 91 (203)
-.++++|++|+|||||+|+|.+.... .......-++....-+..++. ..++||||...+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccc
Confidence 46899999999999999999986321 111111111112233344332 3589999965443
No 359
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.65 E-value=2.1e-07 Score=84.03 Aligned_cols=114 Identities=21% Similarity=0.261 Sum_probs=70.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCC----C--CCcceeeEEEEEEECCEEEEEEEEeCCCch--------hhhhhh
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDS----K--STIGVEFQTRTVTINSKIIKAQIWDTAGQE--------RYRAVT 94 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~ 94 (203)
.=.+|+|++||||||+++.- +.+++-.. . ...+.+..+ .+-+.+ +.+++||+|.. .....|
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c-~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W 186 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNC-DWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAW 186 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCccc-ceEecC---CEEEEcCCCccccCCCcccccHHHH
Confidence 45799999999999999876 44443211 0 111111111 111222 45699999921 112223
Q ss_pred Hhhh---------cCCcEEEEEEeCCC-----HHH----HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709 95 SAYY---------RGALGAVVVYDITK-----RQS----FDHVARGVEELRAHADSSIRIILIGNKSDLVD 147 (203)
Q Consensus 95 ~~~~---------~~~d~~i~v~d~~~-----~~s----~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 147 (203)
..++ +-.+++|+++|+.+ ++. -..++..+.++....+...|+.+++||+|+..
T Consensus 187 ~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 187 LGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 3332 34699999999875 221 23345667777777888999999999999864
No 360
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.64 E-value=5.6e-07 Score=70.17 Aligned_cols=162 Identities=15% Similarity=0.110 Sum_probs=97.0
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCC--------------cceeeEEEEEEECC-E--------------
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKST--------------IGVEFQTRTVTINS-K-------------- 75 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~-~-------------- 75 (203)
.+..+.+++.|....|||||+-.|..+..+...-.+ .+.+.....+-+++ +
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 455699999999999999999988765443221110 11111112221211 1
Q ss_pred ------EEEEEEEeCCCchhhhhh--hHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709 76 ------IIKAQIWDTAGQERYRAV--TSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147 (203)
Q Consensus 76 ------~~~~~l~D~~g~~~~~~~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 147 (203)
..-+.|.||.|++.|-.. ...+=...|-.++++.+++..+-- .-+.+.-......|+++++||+|+..
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~----tkEHLgi~~a~~lPviVvvTK~D~~~ 269 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM----TKEHLGIALAMELPVIVVVTKIDMVP 269 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh----hhHhhhhhhhhcCCEEEEEEecccCc
Confidence 124678999999887542 233446789999999998854321 11222223335899999999999975
Q ss_pred ccC--CCHHHHHHHHH----------------------H---cCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 048709 148 MWA--VSAEDVVEFAE----------------------D---QGLFFSEASALNGDNVDTAFFRLLQEIYA 191 (203)
Q Consensus 148 ~~~--~~~~~~~~~~~----------------------~---~~~~~~~~sa~~~~~i~~~~~~i~~~~~~ 191 (203)
+.. -..+++.+.++ + .-+|++.+|+-+|.|++ ++..+...+..
T Consensus 270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gld-lL~e~f~~Lp~ 339 (527)
T COG5258 270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLD-LLDEFFLLLPK 339 (527)
T ss_pred HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHH-HHHHHHHhCCc
Confidence 311 11222222222 1 12589999999999998 55555544433
No 361
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=2.6e-08 Score=75.19 Aligned_cols=162 Identities=19% Similarity=0.174 Sum_probs=100.5
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCC---CccCCCCCcceeeEE---EEEEE--------------------------
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNE---FCFDSKSTIGVEFQT---RTVTI-------------------------- 72 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~---~~~~~~~~~~~~~~~---~~~~~-------------------------- 72 (203)
+.-+++|.-+|...-||||+++++.+-. |..+...-.+...-. +.+.+
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 5568999999999999999999885531 111110100000000 00000
Q ss_pred ---CC---EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC----HHHHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 048709 73 ---NS---KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITK----RQSFDHVARGVEELRAHADSSIRIILIGNK 142 (203)
Q Consensus 73 ---~~---~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK 142 (203)
.+ --..+.+.|+||++..-...-.-..-.|++++++..+. |++-+.+... +. .+ =..++++-||
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaav-ei-M~----LkhiiilQNK 188 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAV-EI-MK----LKHIIILQNK 188 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHH-HH-hh----hceEEEEech
Confidence 10 01357899999987655433333344588888888876 3444444211 11 11 1247999999
Q ss_pred CCCCcccC--CCHHHHHHHHHH---cCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709 143 SDLVDMWA--VSAEDVVEFAED---QGLFFSEASALNGDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 143 ~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~ 192 (203)
+|+....+ ...+++..|... .+.|++++||.-++|++-+.++|++++.-.
T Consensus 189 iDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvP 243 (466)
T KOG0466|consen 189 IDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVP 243 (466)
T ss_pred hhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCC
Confidence 99975322 234556666654 467999999999999999999999988654
No 362
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.63 E-value=9e-07 Score=65.78 Aligned_cols=86 Identities=19% Similarity=0.067 Sum_probs=52.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC--CCccCCCC-CcceeeEEEEEEEC-CEEEEEEEEeCCCchhhhh------hhHh
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKN--EFCFDSKS-TIGVEFQTRTVTIN-SKIIKAQIWDTAGQERYRA------VTSA 96 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~--~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~------~~~~ 96 (203)
+..-|+|+|++++|||+|+|.|++. .+...... ..+........+.. +....+.++||+|...... ....
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 4577999999999999999999998 55533321 11111222222221 2345789999999543221 1122
Q ss_pred hhcC--CcEEEEEEeCCC
Q 048709 97 YYRG--ALGAVVVYDITK 112 (203)
Q Consensus 97 ~~~~--~d~~i~v~d~~~ 112 (203)
.+.. ++.+|+..+...
T Consensus 86 ~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 86 ALATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHHhCEEEEeccCcc
Confidence 2333 778888877764
No 363
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.62 E-value=2.1e-07 Score=65.15 Aligned_cols=84 Identities=17% Similarity=0.112 Sum_probs=55.2
Q ss_pred cEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Q 048709 102 LGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTA 181 (203)
Q Consensus 102 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 181 (203)
|++++|+|+.++.+... .++.. ......++|+++|+||+|+....+. .+.+..+....+..++.+||+++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 68999999988754432 22221 1112257899999999998642110 11112233334567899999999999999
Q ss_pred HHHHHHHH
Q 048709 182 FFRLLQEI 189 (203)
Q Consensus 182 ~~~i~~~~ 189 (203)
++.+.+..
T Consensus 77 ~~~i~~~~ 84 (155)
T cd01849 77 ESAFTKQT 84 (155)
T ss_pred HHHHHHHh
Confidence 99887654
No 364
>PRK14974 cell division protein FtsY; Provisional
Probab=98.61 E-value=6.4e-07 Score=70.15 Aligned_cols=95 Identities=16% Similarity=-0.004 Sum_probs=58.1
Q ss_pred EEEEEEeCCCchhhhh-hh---Hhh--hcCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc
Q 048709 77 IKAQIWDTAGQERYRA-VT---SAY--YRGALGAVVVYDITKRQ-SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW 149 (203)
Q Consensus 77 ~~~~l~D~~g~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 149 (203)
+.+.|+||+|...... +. ..+ ....|.+++|+|+.... ..+.+..+ .... .+--+|+||.|...
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f----~~~~---~~~giIlTKlD~~~-- 293 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREF----NEAV---GIDGVILTKVDADA-- 293 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHH----HhcC---CCCEEEEeeecCCC--
Confidence 4689999999643211 11 111 23568889999987643 22222222 2111 12478899999854
Q ss_pred CCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709 150 AVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (203)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 184 (203)
..-.+...+...+.|+..++ +|.+++++..+
T Consensus 294 --~~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~ 324 (336)
T PRK14974 294 --KGGAALSIAYVIGKPILFLG--VGQGYDDLIPF 324 (336)
T ss_pred --CccHHHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence 23356666667789988887 78888776544
No 365
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.59 E-value=4.7e-07 Score=70.58 Aligned_cols=96 Identities=19% Similarity=0.103 Sum_probs=58.7
Q ss_pred EEEEEEEeCCCchhhhhh----hHhh--------hcCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 048709 76 IIKAQIWDTAGQERYRAV----TSAY--------YRGALGAVVVYDITKRQ-SFDHVARGVEELRAHADSSIRIILIGNK 142 (203)
Q Consensus 76 ~~~~~l~D~~g~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK 142 (203)
.+.+.++||||....... ...+ -...+..++|+|++... .+.++..+ .... -+.-+|+||
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f----~~~~---~~~giIlTK 268 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF----HEAV---GLTGIILTK 268 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH----HhhC---CCCEEEEEC
Confidence 457899999995432211 1111 12457789999998632 33332222 1111 234788999
Q ss_pred CCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709 143 SDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (203)
Q Consensus 143 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 184 (203)
.|... ..-.+...+...++|+..++ +|++++++-.+
T Consensus 269 lD~t~----~~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~~ 304 (318)
T PRK10416 269 LDGTA----KGGVVFAIADELGIPIKFIG--VGEGIDDLQPF 304 (318)
T ss_pred CCCCC----CccHHHHHHHHHCCCEEEEe--CCCChhhCccC
Confidence 99543 24456777778899998888 77888766443
No 366
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.57 E-value=6.2e-07 Score=63.01 Aligned_cols=63 Identities=14% Similarity=0.150 Sum_probs=37.2
Q ss_pred EEEEEEeCCCchhhhhhhHhh--------hcCCcEEEEEEeCCCHHHHH-HHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 048709 77 IKAQIWDTAGQERYRAVTSAY--------YRGALGAVVVYDITKRQSFD-HVARGVEELRAHADSSIRIILIGNKSDL 145 (203)
Q Consensus 77 ~~~~l~D~~g~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 145 (203)
.+..++|++|..........+ .-..+.+++++|+.+..... ....+..++... =++++||+|+
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a------d~ivlnk~dl 158 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA------DRILLNKTDL 158 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC------CEEEEecccC
Confidence 466889999965443333321 23468899999987533221 222233333332 2789999995
No 367
>PRK12289 GTPase RsgA; Reviewed
Probab=98.56 E-value=1.2e-07 Score=74.77 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 048709 31 VVVIGDSAVGKSQILSRFTKNEF 53 (203)
Q Consensus 31 i~vvG~~~sGKStli~~l~~~~~ 53 (203)
++|+|++|+|||||+|+|.+...
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~ 197 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVE 197 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccc
Confidence 89999999999999999997543
No 368
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.56 E-value=1.4e-05 Score=55.25 Aligned_cols=146 Identities=17% Similarity=0.138 Sum_probs=78.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCC-Cc------------------
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA-GQ------------------ 87 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~-g~------------------ 87 (203)
..+||.+.|+|||||||++..+...-.... ..-..+.+.++.-++..+-|.+.|.. |.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g---~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG---YKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcC---ceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 569999999999999999998864321111 11133455666667777777787776 31
Q ss_pred ---hhhh----hhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHH
Q 048709 88 ---ERYR----AVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFA 160 (203)
Q Consensus 88 ---~~~~----~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~ 160 (203)
+.+. ......+..+|++| +|--.+-.+. .+.+...+......+.|++.++.+.+. ++ -+.++-
T Consensus 81 V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMElk-s~~f~~~ve~vl~~~kpliatlHrrsr-~P------~v~~ik 150 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADVII--IDEIGPMELK-SKKFREAVEEVLKSGKPLIATLHRRSR-HP------LVQRIK 150 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCEEE--Eecccchhhc-cHHHHHHHHHHhcCCCcEEEEEecccC-Ch------HHHHhh
Confidence 0111 11122234455544 4433221111 123444444445567888888877654 11 223333
Q ss_pred HHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 048709 161 EDQGLFFSEASALNGDNVDTAFFRLLQEI 189 (203)
Q Consensus 161 ~~~~~~~~~~sa~~~~~i~~~~~~i~~~~ 189 (203)
...++.++ .+..|-+.+++.+...+
T Consensus 151 ~~~~v~v~----lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 151 KLGGVYVF----LTPENRNRILNEILSVL 175 (179)
T ss_pred hcCCEEEE----EccchhhHHHHHHHHHh
Confidence 33334443 44445556777766654
No 369
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.55 E-value=1.9e-06 Score=65.87 Aligned_cols=96 Identities=16% Similarity=0.084 Sum_probs=59.4
Q ss_pred EEEEEEEeCCCchhhhhhhH----h---hh-----cCCcEEEEEEeCCCH-HHHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 048709 76 IIKAQIWDTAGQERYRAVTS----A---YY-----RGALGAVVVYDITKR-QSFDHVARGVEELRAHADSSIRIILIGNK 142 (203)
Q Consensus 76 ~~~~~l~D~~g~~~~~~~~~----~---~~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK 142 (203)
.+.+.++||||....+...- . .. ...|.+++|+|++.. +.+..+. .+.+.. -+.-+|+||
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~----~f~~~~---~~~g~IlTK 226 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAK----VFNEAV---GLTGIILTK 226 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHH----HHHhhC---CCCEEEEEc
Confidence 36789999999654322211 1 11 237889999999753 2333322 222211 135788999
Q ss_pred CCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709 143 SDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (203)
Q Consensus 143 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 184 (203)
.|... ..-.+.......+.|+..++ +|.+++++-.+
T Consensus 227 lDe~~----~~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~~ 262 (272)
T TIGR00064 227 LDGTA----KGGIILSIAYELKLPIKFIG--VGEKIDDLAPF 262 (272)
T ss_pred cCCCC----CccHHHHHHHHHCcCEEEEe--CCCChHhCccC
Confidence 99754 34456666777789988888 77777765443
No 370
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.55 E-value=2.9e-07 Score=63.42 Aligned_cols=76 Identities=24% Similarity=0.212 Sum_probs=52.5
Q ss_pred HhhhcCCcEEEEEEeCCCHHHHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEec
Q 048709 95 SAYYRGALGAVVVYDITKRQSFD--HVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASA 172 (203)
Q Consensus 95 ~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa 172 (203)
...+..+|++++|+|+.++.+.. .+..++.. . ..++|+++|+||+|+.... ...+..++....+..++++||
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~---~-~~~k~~iivlNK~DL~~~~--~~~~~~~~~~~~~~~ii~iSa 79 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKE---V-DPRKKNILLLNKADLLTEE--QRKAWAEYFKKEGIVVVFFSA 79 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHh---c-cCCCcEEEEEechhcCCHH--HHHHHHHHHHhcCCeEEEEEe
Confidence 34578999999999998875433 23333332 1 2468999999999986532 223445556666788999999
Q ss_pred CCCC
Q 048709 173 LNGD 176 (203)
Q Consensus 173 ~~~~ 176 (203)
+++.
T Consensus 80 ~~~~ 83 (141)
T cd01857 80 LKEN 83 (141)
T ss_pred cCCC
Confidence 8764
No 371
>PRK12288 GTPase RsgA; Reviewed
Probab=98.54 E-value=1.1e-07 Score=74.88 Aligned_cols=58 Identities=19% Similarity=0.348 Sum_probs=34.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCccC-CCCC---cc--eeeEEEEEEECCEEEEEEEEeCCCchhhh
Q 048709 31 VVVIGDSAVGKSQILSRFTKNEFCFD-SKST---IG--VEFQTRTVTINSKIIKAQIWDTAGQERYR 91 (203)
Q Consensus 31 i~vvG~~~sGKStli~~l~~~~~~~~-~~~~---~~--~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 91 (203)
++|+|.+|+|||||+|+|.+...... ..+. -| ++....-+.+++. ..++||||...+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 79999999999999999997643211 1111 11 1112222333322 2489999966544
No 372
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.54 E-value=1.1e-07 Score=76.42 Aligned_cols=57 Identities=25% Similarity=0.255 Sum_probs=44.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCch
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 88 (203)
.+.|++||.||+||||+||+|.+.+....+ .|.|-+....++.+.. .+.|+||||..
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS-~TPGkTKHFQTi~ls~---~v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVS-STPGKTKHFQTIFLSP---SVCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeee-cCCCCcceeEEEEcCC---CceecCCCCcc
Confidence 699999999999999999999998764443 5666555666665543 46799999943
No 373
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.52 E-value=6e-07 Score=63.95 Aligned_cols=89 Identities=17% Similarity=0.045 Sum_probs=60.1
Q ss_pred hHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecC
Q 048709 94 TSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASAL 173 (203)
Q Consensus 94 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 173 (203)
....+.++|.+++|+|++++...... .....+ .+.|+++|+||+|+.+.. ......++....+..++.+||+
T Consensus 13 ~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~~--~~~~~~~~~~~~~~~vi~iSa~ 84 (171)
T cd01856 13 IKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADPK--KTKKWLKYFESKGEKVLFVNAK 84 (171)
T ss_pred HHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCChH--HHHHHHHHHHhcCCeEEEEECC
Confidence 45568899999999999875432111 111111 246899999999986421 1112223333445678999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 048709 174 NGDNVDTAFFRLLQEIY 190 (203)
Q Consensus 174 ~~~~i~~~~~~i~~~~~ 190 (203)
++.|++++.+.+.+.+.
T Consensus 85 ~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 85 SGKGVKKLLKAAKKLLK 101 (171)
T ss_pred CcccHHHHHHHHHHHHH
Confidence 99999999999888754
No 374
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.49 E-value=5.6e-07 Score=66.68 Aligned_cols=84 Identities=21% Similarity=0.150 Sum_probs=55.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh-------hhhHhhhcCC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR-------AVTSAYYRGA 101 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~ 101 (203)
-++.++|.|.+||||++..|.+...+......++.....-.+.+++ -++++.|.||...-. ...-+..+.|
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 4899999999999999999988765543333333333333333433 567899999943221 1223456778
Q ss_pred cEEEEEEeCCCHH
Q 048709 102 LGAVVVYDITKRQ 114 (203)
Q Consensus 102 d~~i~v~d~~~~~ 114 (203)
+.+++|.|+..|-
T Consensus 138 nli~~vld~~kp~ 150 (358)
T KOG1487|consen 138 NLIFIVLDVLKPL 150 (358)
T ss_pred cEEEEEeeccCcc
Confidence 8999999987543
No 375
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=2.4e-07 Score=72.88 Aligned_cols=128 Identities=19% Similarity=0.180 Sum_probs=94.4
Q ss_pred ccccCCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcC--------CCccCC--------CCCcceeeEEEEEEECCEEEEE
Q 048709 16 QQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKN--------EFCFDS--------KSTIGVEFQTRTVTINSKIIKA 79 (203)
Q Consensus 16 ~~~~~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~--------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 79 (203)
+..+..++....-.+|.++..-.+||||...+++.. .++... ...-+++.+...++++.++.++
T Consensus 25 slhs~~~p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~ri 104 (753)
T KOG0464|consen 25 SLHSIINPAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRI 104 (753)
T ss_pred hccCCCCCchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceE
Confidence 334444555556678999999999999999987542 221111 1223466677778888888999
Q ss_pred EEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709 80 QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147 (203)
Q Consensus 80 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 147 (203)
+++||||+..|+--.+.+++--|+++.|||++..-.-+.+-.|.+ ....++|..+.+||+|...
T Consensus 105 nlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 105 NLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKLA 168 (753)
T ss_pred eeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhhh
Confidence 999999999998888889999999999999987544444444433 2335789999999999764
No 376
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=1.9e-06 Score=66.31 Aligned_cols=139 Identities=22% Similarity=0.204 Sum_probs=89.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC----------CC------ccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhh
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKN----------EF------CFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY 90 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~----------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 90 (203)
..++|.-+|...-|||||-.+++.- ++ +++ ..-+++.....+.++-....+--.||||+..|
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEE--kaRGITIn~aHveYeTa~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEE--KARGITINAAHVEYETAKRHYAHTDCPGHADY 130 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhh--hhccceEeeeeeeeeccccccccCCCCchHHH
Confidence 3599999999999999999987531 11 111 12234444444445444556677899998888
Q ss_pred hhhhHhhhcCCcEEEEEEeCCCH---HHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC---CCHHHHHHHHHHcC
Q 048709 91 RAVTSAYYRGALGAVVVYDITKR---QSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA---VSAEDVVEFAEDQG 164 (203)
Q Consensus 91 ~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~ 164 (203)
-...-.-....|+.|+|+.++|. ++-+.+ ....+.. -..+++.+||.|+.++.+ .-.-|+++++..++
T Consensus 131 IKNMItGaaqMDGaILVVaatDG~MPQTrEHl----LLArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~g 204 (449)
T KOG0460|consen 131 IKNMITGAAQMDGAILVVAATDGPMPQTREHL----LLARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFG 204 (449)
T ss_pred HHHhhcCccccCceEEEEEcCCCCCcchHHHH----HHHHHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcC
Confidence 76665566788999999999984 333322 2222221 133788899999985322 22335677777776
Q ss_pred -----CeEEEEecC
Q 048709 165 -----LFFSEASAL 173 (203)
Q Consensus 165 -----~~~~~~sa~ 173 (203)
+|++.=||+
T Consensus 205 f~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 205 FDGDNTPVIRGSAL 218 (449)
T ss_pred CCCCCCCeeecchh
Confidence 478876664
No 377
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.47 E-value=3.3e-06 Score=68.03 Aligned_cols=134 Identities=12% Similarity=0.060 Sum_probs=71.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh------cCCCc-cCCCC--------------CcceeeEEEEEEEC-------------
Q 048709 28 VFKVVVIGDSAVGKSQILSRFT------KNEFC-FDSKS--------------TIGVEFQTRTVTIN------------- 73 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~------~~~~~-~~~~~--------------~~~~~~~~~~~~~~------------- 73 (203)
+.-|+++|++||||||++..|. +.+.. ...++ ..+..+......-+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999884 22211 00100 01111110000000
Q ss_pred CEEEEEEEEeCCCchhhhh-hhH---hh--hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709 74 SKIIKAQIWDTAGQERYRA-VTS---AY--YRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147 (203)
Q Consensus 74 ~~~~~~~l~D~~g~~~~~~-~~~---~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 147 (203)
...+.+.|+||+|...... +.. .+ ....+-+++|+|+.-.+.-.... ..+... -.+.-+|+||.|...
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a---~~F~~~---~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQA---KAFKDS---VDVGSVIITKLDGHA 253 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHH---HHHHhc---cCCcEEEEECccCCC
Confidence 0246889999999543321 111 11 23467899999987543322221 222221 234678899999753
Q ss_pred ccCCCHHHHHHHHHHcCCeEEEEe
Q 048709 148 MWAVSAEDVVEFAEDQGLFFSEAS 171 (203)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~s 171 (203)
..-.+.......+.|+..++
T Consensus 254 ----rgG~aLs~~~~t~~PI~fig 273 (429)
T TIGR01425 254 ----KGGGALSAVAATKSPIIFIG 273 (429)
T ss_pred ----CccHHhhhHHHHCCCeEEEc
Confidence 22335555666677766554
No 378
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=8e-07 Score=74.50 Aligned_cols=116 Identities=16% Similarity=0.253 Sum_probs=79.1
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCc------------cC--CCCCcceeeEEEEEEECCEEEEEEEEeCCCch
Q 048709 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFC------------FD--SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88 (203)
Q Consensus 23 ~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~------------~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 88 (203)
.......+|+++-...-|||||..+|....-- .. ...+-+++.....+..-...+.++++|+||+-
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv 83 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV 83 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence 34556789999999999999999998653211 00 11222333333333333345678999999999
Q ss_pred hhhhhhHhhhcCCcEEEEEEeCCCH---HHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 048709 89 RYRAVTSAYYRGALGAVVVYDITKR---QSFDHVARGVEELRAHADSSIRIILIGNKSDL 145 (203)
Q Consensus 89 ~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 145 (203)
.|.+.......-+|++++++|+... ++..-+++ ... .+...++|+||+|.
T Consensus 84 df~sevssas~l~d~alvlvdvvegv~~qt~~vlrq----~~~---~~~~~~lvinkidr 136 (887)
T KOG0467|consen 84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQ----AWI---EGLKPILVINKIDR 136 (887)
T ss_pred chhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHH----HHH---ccCceEEEEehhhh
Confidence 9998888889999999999999874 23222221 111 34557899999994
No 379
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.46 E-value=1.2e-06 Score=67.19 Aligned_cols=90 Identities=17% Similarity=0.152 Sum_probs=61.3
Q ss_pred hHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecC
Q 048709 94 TSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASAL 173 (203)
Q Consensus 94 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 173 (203)
....+..+|++++|+|+..+.+... ..+.... .+.|+++|+||+|+.+.. ..+...++....+.+++.+||+
T Consensus 15 ~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l----~~kp~IiVlNK~DL~~~~--~~~~~~~~~~~~~~~vi~iSa~ 86 (276)
T TIGR03596 15 IKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR----GNKPRLIVLNKADLADPA--VTKQWLKYFEEKGIKALAINAK 86 (276)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH----CCCCEEEEEEccccCCHH--HHHHHHHHHHHcCCeEEEEECC
Confidence 4556889999999999987644322 1111111 257899999999986421 1122222333456688999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 048709 174 NGDNVDTAFFRLLQEIYA 191 (203)
Q Consensus 174 ~~~~i~~~~~~i~~~~~~ 191 (203)
++.|++++.+.+.+.+.+
T Consensus 87 ~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 87 KGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred CcccHHHHHHHHHHHHHH
Confidence 999999999888887754
No 380
>PRK13796 GTPase YqeH; Provisional
Probab=98.45 E-value=2.7e-07 Score=73.45 Aligned_cols=57 Identities=23% Similarity=0.377 Sum_probs=37.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC----ccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCch
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEF----CFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 88 (203)
.++.|+|.+|+|||||+|+|..... .....+..+++.....+.+++. ..++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 5799999999999999999985431 1111133344444455555432 3699999953
No 381
>PRK13796 GTPase YqeH; Provisional
Probab=98.44 E-value=2.3e-06 Score=68.11 Aligned_cols=94 Identities=21% Similarity=0.258 Sum_probs=62.0
Q ss_pred hhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHH----HHHc
Q 048709 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEF----AEDQ 163 (203)
Q Consensus 88 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~~~ 163 (203)
+.|.......-...+.+++|+|+.+... .|...+.+.. .+.|+++|+||+|+... ....+.+.++ +...
T Consensus 57 ~~~~~~l~~i~~~~~lIv~VVD~~D~~~-----s~~~~L~~~~-~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 57 DDFLKLLNGIGDSDALVVNVVDIFDFNG-----SWIPGLHRFV-GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHHhhcccCcEEEEEEECccCCC-----chhHHHHHHh-CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhc
Confidence 3455555444333448999999987431 2333333332 26789999999999642 3344444444 4455
Q ss_pred CC---eEEEEecCCCCCHHHHHHHHHHH
Q 048709 164 GL---FFSEASALNGDNVDTAFFRLLQE 188 (203)
Q Consensus 164 ~~---~~~~~sa~~~~~i~~~~~~i~~~ 188 (203)
++ .++.+||+++.|++++++.+.+.
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 65 58999999999999999988664
No 382
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=6.7e-06 Score=60.80 Aligned_cols=161 Identities=20% Similarity=0.208 Sum_probs=101.9
Q ss_pred eeEEEEEcCCCC--cHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 28 VFKVVVIGDSAV--GKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 28 ~~~i~vvG~~~s--GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
...++|+|-+|+ ||.+++.+|...++.....+...+.++.+++.-......+.++=.+-.+.+--......+-.-+++
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~v 83 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFV 83 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEE
Confidence 357899999998 999999999988887666555555566555533222223344333332222222223344556899
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcc-------------------------------------
Q 048709 106 VVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM------------------------------------- 148 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------------------------------- 148 (203)
+|||.+....+..+..|+....... ---.+.++||+|....
T Consensus 84 mvfdlse~s~l~alqdwl~htdins--fdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegss 161 (418)
T KOG4273|consen 84 MVFDLSEKSGLDALQDWLPHTDINS--FDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSS 161 (418)
T ss_pred EEEeccchhhhHHHHhhcccccccc--chhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccccc
Confidence 9999999999988988876533221 1124677999996421
Q ss_pred -----c--CCCHHHHHHHHHHcCCeEEEEecCC------------CCCHHHHHHHHHHHHH
Q 048709 149 -----W--AVSAEDVVEFAEDQGLFFSEASALN------------GDNVDTAFFRLLQEIY 190 (203)
Q Consensus 149 -----~--~~~~~~~~~~~~~~~~~~~~~sa~~------------~~~i~~~~~~i~~~~~ 190 (203)
. -.......+++..+++.+++.++.. ..|+..+|..+-..+.
T Consensus 162 llgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmw 222 (418)
T KOG4273|consen 162 LLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMW 222 (418)
T ss_pred ccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccC
Confidence 0 0122334667778888999887732 2578888877765553
No 383
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.38 E-value=2.2e-06 Score=64.17 Aligned_cols=118 Identities=20% Similarity=0.349 Sum_probs=70.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCC----CCcceeeEEEEEEECCEEEEEEEEeCCCc-------hhhhh--
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSK----STIGVEFQTRTVTINSKIIKAQIWDTAGQ-------ERYRA-- 92 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-------~~~~~-- 92 (203)
...++|+-||..|.|||||++.|++-.+..... +.......++.+.-.+..+++.++||.|. ++|..
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iV 119 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIV 119 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHH
Confidence 356999999999999999999999977653321 22223333333334577788999999982 12211
Q ss_pred -----hhHhh-------------hc--CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709 93 -----VTSAY-------------YR--GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147 (203)
Q Consensus 93 -----~~~~~-------------~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 147 (203)
..+.| ++ ..+++++.+..+. .++..+... ..+....++.+|.++-|.|-..
T Consensus 120 dyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLv---tmk~LdskVNIIPvIAKaDtis 190 (406)
T KOG3859|consen 120 DYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLV---TMKKLDSKVNIIPVIAKADTIS 190 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHH---HHHHHhhhhhhHHHHHHhhhhh
Confidence 11222 23 4467788887775 233333211 1122223455777788888543
No 384
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.38 E-value=8.4e-07 Score=70.54 Aligned_cols=58 Identities=21% Similarity=0.367 Sum_probs=38.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCc----cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFC----FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 89 (203)
.+++++|.+|+|||||+|+|++.... ....+..+++.....+..++ .+.++||||...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCCC
Confidence 58999999999999999999975321 11112333444444455432 246999999543
No 385
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.38 E-value=6.8e-06 Score=59.77 Aligned_cols=85 Identities=18% Similarity=0.058 Sum_probs=50.3
Q ss_pred EEEEEEeCCCchhhhhh----hHhhh--cCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc
Q 048709 77 IKAQIWDTAGQERYRAV----TSAYY--RGALGAVVVYDITKRQ-SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW 149 (203)
Q Consensus 77 ~~~~l~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 149 (203)
+.+.++||+|....... ...++ ...+-+++|++++... ....+... ..... +--+++||.|-..
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~----~~~~~---~~~lIlTKlDet~-- 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF----YEAFG---IDGLILTKLDETA-- 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH----HHHSS---TCEEEEESTTSSS--
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH----hhccc---CceEEEEeecCCC--
Confidence 46899999995433211 11111 2567789999988653 32222222 22211 2257799999754
Q ss_pred CCCHHHHHHHHHHcCCeEEEEec
Q 048709 150 AVSAEDVVEFAEDQGLFFSEASA 172 (203)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~sa 172 (203)
..-.+...+...+.|+-.++.
T Consensus 155 --~~G~~l~~~~~~~~Pi~~it~ 175 (196)
T PF00448_consen 155 --RLGALLSLAYESGLPISYITT 175 (196)
T ss_dssp --TTHHHHHHHHHHTSEEEEEES
T ss_pred --CcccceeHHHHhCCCeEEEEC
Confidence 345688888889998777663
No 386
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.38 E-value=1.3e-06 Score=62.88 Aligned_cols=80 Identities=19% Similarity=0.188 Sum_probs=42.7
Q ss_pred EEEEEeCCCchhhh-h--hhHh---hhcC---CcEEEEEEeCCC-HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709 78 KAQIWDTAGQERYR-A--VTSA---YYRG---ALGAVVVYDITK-RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147 (203)
Q Consensus 78 ~~~l~D~~g~~~~~-~--~~~~---~~~~---~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 147 (203)
.+.++|+||+.... + ..+. .+.. .-+++++++..= -++...+..-+..+.....-.+|.|=|++|+|+..
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK 178 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence 56799999975432 1 1111 1221 223566666542 12333333333444444445789999999999976
Q ss_pred ccCCCHHHHHHH
Q 048709 148 MWAVSAEDVVEF 159 (203)
Q Consensus 148 ~~~~~~~~~~~~ 159 (203)
. .+.+++.+|
T Consensus 179 ~--~~k~~l~~F 188 (273)
T KOG1534|consen 179 D--KNKKELERF 188 (273)
T ss_pred h--hhHHHHHHh
Confidence 3 333444443
No 387
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.38 E-value=2.3e-06 Score=66.01 Aligned_cols=91 Identities=20% Similarity=0.152 Sum_probs=62.5
Q ss_pred hHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecC
Q 048709 94 TSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASAL 173 (203)
Q Consensus 94 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 173 (203)
....+..+|++++|+|+..+.+.+. .++.... .+.|+++|+||+|+.+.. ..+...++....+.+++.+|++
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~--~~~~~~~~~~~~~~~vi~vSa~ 89 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPE--VTKKWIEYFEEQGIKALAINAK 89 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHH--HHHHHHHHHHHcCCeEEEEECC
Confidence 4556889999999999987644222 1122211 257899999999986421 1122333334446788999999
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q 048709 174 NGDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 174 ~~~~i~~~~~~i~~~~~~~ 192 (203)
++.|++++++.+.+.+...
T Consensus 90 ~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 90 KGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred CcccHHHHHHHHHHHHHHH
Confidence 9999999999888877553
No 388
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.38 E-value=4.7e-05 Score=62.33 Aligned_cols=96 Identities=14% Similarity=0.132 Sum_probs=61.1
Q ss_pred EEEEEeCCCc-------------hhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 048709 78 KAQIWDTAGQ-------------ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSD 144 (203)
Q Consensus 78 ~~~l~D~~g~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 144 (203)
+.++.|.||. +....+..+|..+.+++|+|+--.+-+.-.. ..-..+......+...|+|+||+|
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERS--nVTDLVsq~DP~GrRTIfVLTKVD 490 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERS--IVTDLVSQMDPHGRRTIFVLTKVD 490 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhh--hHHHHHHhcCCCCCeeEEEEeecc
Confidence 4678999992 2334566788999999999984333222111 111222333335677899999999
Q ss_pred CCcccCCCHHHHHHHHHHcCC-----eEEEEecCCC
Q 048709 145 LVDMWAVSAEDVVEFAEDQGL-----FFSEASALNG 175 (203)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~sa~~~ 175 (203)
+++..-.+++.+++++...-+ .||.+-.-.|
T Consensus 491 lAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrG 526 (980)
T KOG0447|consen 491 LAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKG 526 (980)
T ss_pred hhhhccCCHHHHHHHHhcCccchhhcceeEEEecCC
Confidence 998767788888888765433 2555544333
No 389
>PRK01889 GTPase RsgA; Reviewed
Probab=98.38 E-value=2e-06 Score=68.23 Aligned_cols=84 Identities=17% Similarity=0.179 Sum_probs=57.9
Q ss_pred hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 048709 98 YRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDN 177 (203)
Q Consensus 98 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 177 (203)
..++|.+++|+++..+-....+.+++..+.. .+++.++|+||+|+.+......+.+..+ ..+++++.+|++++.|
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~---~~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~~g~g 184 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE---SGAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSALDGEG 184 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH---cCCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECCCCcc
Confidence 5789999999999754444455555554444 4677789999999975311011222222 4578899999999999
Q ss_pred HHHHHHHHH
Q 048709 178 VDTAFFRLL 186 (203)
Q Consensus 178 i~~~~~~i~ 186 (203)
++++..++.
T Consensus 185 l~~L~~~L~ 193 (356)
T PRK01889 185 LDVLAAWLS 193 (356)
T ss_pred HHHHHHHhh
Confidence 998887764
No 390
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.36 E-value=9.6e-07 Score=66.51 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~ 52 (203)
-.++++|.+|+|||||+|+|.+..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhh
Confidence 368999999999999999999754
No 391
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.36 E-value=7e-07 Score=68.02 Aligned_cols=59 Identities=20% Similarity=0.208 Sum_probs=36.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC------CCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh
Q 048709 30 KVVVIGDSAVGKSQILSRFTKN------EFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR 91 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 91 (203)
-.+++|.+|+|||||+|+|... +++......--++....-+.+++.+ .++||||...+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 5789999999999999999763 2222221111122333444554333 489999965543
No 392
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.30 E-value=1.3e-05 Score=62.56 Aligned_cols=88 Identities=20% Similarity=0.125 Sum_probs=52.8
Q ss_pred EEEEEEeCCCchhhhhhhHhhhc--------CCcEEEEEEeCCCHHHHHH-HHHH-HHHHHhhcCCCCcEEEEEeCCCCC
Q 048709 77 IKAQIWDTAGQERYRAVTSAYYR--------GALGAVVVYDITKRQSFDH-VARG-VEELRAHADSSIRIILIGNKSDLV 146 (203)
Q Consensus 77 ~~~~l~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~-~~~~-~~~~~~~~~~~~p~ivv~nK~D~~ 146 (203)
+...++++.|.-........++. ..|+++-|+|+.+-..... +... ..++... =++++||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEEEEecccCC
Confidence 45678888886555444444332 3377999999987443222 2222 2333332 28999999998
Q ss_pred cccCCCHHHHHHHHHH--cCCeEEEEec
Q 048709 147 DMWAVSAEDVVEFAED--QGLFFSEASA 172 (203)
Q Consensus 147 ~~~~~~~~~~~~~~~~--~~~~~~~~sa 172 (203)
+.. ..+.+.+..+. ..++++.++.
T Consensus 159 ~~~--~l~~l~~~l~~lnp~A~i~~~~~ 184 (323)
T COG0523 159 DAE--ELEALEARLRKLNPRARIIETSY 184 (323)
T ss_pred CHH--HHHHHHHHHHHhCCCCeEEEccc
Confidence 753 24444555444 4467888777
No 393
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=98.29 E-value=4.2e-05 Score=54.75 Aligned_cols=86 Identities=26% Similarity=0.274 Sum_probs=60.4
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHH
Q 048709 75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAE 154 (203)
Q Consensus 75 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 154 (203)
..+.+.++|||+.... .....+..+|.+++++..+. .+...+..+++.+... +.|+.+|+||+|... ...+
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~---~~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLND---EIAE 161 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCc---chHH
Confidence 4568899999965322 23455788999999998874 3555555665555443 567889999999753 2356
Q ss_pred HHHHHHHHcCCeEEE
Q 048709 155 DVVEFAEDQGLFFSE 169 (203)
Q Consensus 155 ~~~~~~~~~~~~~~~ 169 (203)
++.+++...+++++.
T Consensus 162 ~~~~~~~~~~~~vl~ 176 (179)
T cd03110 162 EIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHHcCCCeEE
Confidence 778888888888764
No 394
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.28 E-value=5.6e-06 Score=57.51 Aligned_cols=58 Identities=19% Similarity=0.105 Sum_probs=37.7
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 048709 76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSD 144 (203)
Q Consensus 76 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 144 (203)
.+.+.++||+|.... ...++..+|-+++|...+-.+.+.-++. ..+.. .-++++||.|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~~~------~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIKA--GIMEI------ADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhhh--hHhhh------cCEEEEeCCC
Confidence 467899999985422 2347888999999998874444433321 22222 1378899987
No 395
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.28 E-value=8.1e-06 Score=58.17 Aligned_cols=84 Identities=14% Similarity=0.007 Sum_probs=47.8
Q ss_pred EEEEEEEeCCCchhhhh----hhHhh--hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc
Q 048709 76 IIKAQIWDTAGQERYRA----VTSAY--YRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW 149 (203)
Q Consensus 76 ~~~~~l~D~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 149 (203)
...+.++|++|...+.. ....+ ....+.+++|+++...... ......+.+.. + ..-+|+||.|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~---~~~~~~~~~~~--~-~~~viltk~D~~~-- 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA---VNQAKAFNEAL--G-ITGVILTKLDGDA-- 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH---HHHHHHHHhhC--C-CCEEEEECCcCCC--
Confidence 34578899999642211 11111 1348899999998754322 12233333222 2 3567789999765
Q ss_pred CCCHHHHHHHHHHcCCeEEE
Q 048709 150 AVSAEDVVEFAEDQGLFFSE 169 (203)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~ 169 (203)
....+...+...++|+..
T Consensus 154 --~~g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 154 --RGGAALSIRAVTGKPIKF 171 (173)
T ss_pred --CcchhhhhHHHHCcCeEe
Confidence 233445567777777654
No 396
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.24 E-value=2.3e-05 Score=62.24 Aligned_cols=141 Identities=12% Similarity=0.089 Sum_probs=74.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCcc-CCCC--CcceeeE------------------EEEEEE---------CCEEE
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCF-DSKS--TIGVEFQ------------------TRTVTI---------NSKII 77 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~-~~~~--~~~~~~~------------------~~~~~~---------~~~~~ 77 (203)
.-.++++|++|+||||++..|...-... .... ..+.+.+ .....- .-...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 4578899999999999999886531100 0000 0000000 000000 01234
Q ss_pred EEEEEeCCCchhhhhhhHh---hhc---CCcEEEEEEeCCC-HHHHHHHHHHHHHHHhhcCC--CCcEEEEEeCCCCCcc
Q 048709 78 KAQIWDTAGQERYRAVTSA---YYR---GALGAVVVYDITK-RQSFDHVARGVEELRAHADS--SIRIILIGNKSDLVDM 148 (203)
Q Consensus 78 ~~~l~D~~g~~~~~~~~~~---~~~---~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~ 148 (203)
.+.++||+|....+..... .+. ...-.++|++++. .+....+...+......... ..+--+|+||.|-..
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~- 295 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS- 295 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC-
Confidence 7899999996543322111 122 2334588888876 34444333222222211100 012467889999754
Q ss_pred cCCCHHHHHHHHHHcCCeEEEEec
Q 048709 149 WAVSAEDVVEFAEDQGLFFSEASA 172 (203)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~sa 172 (203)
..-.+..++...+.|+..++.
T Consensus 296 ---~~G~~l~~~~~~~lPi~yvt~ 316 (374)
T PRK14722 296 ---NLGGVLDTVIRYKLPVHYVST 316 (374)
T ss_pred ---CccHHHHHHHHHCcCeEEEec
Confidence 455677888888888776653
No 397
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.23 E-value=2.4e-05 Score=64.46 Aligned_cols=133 Identities=13% Similarity=0.208 Sum_probs=72.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC--------CCc-cCCCC--------------CcceeeEEEEEEE---------CCE
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKN--------EFC-FDSKS--------------TIGVEFQTRTVTI---------NSK 75 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~--------~~~-~~~~~--------------~~~~~~~~~~~~~---------~~~ 75 (203)
.-.|+|+|++|+||||++..|... .+. ...+. ..+..+ ....- .-.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v--~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAV--HEADSAESLLDLLERLR 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCcee--EecCcHHHHHHHHHHhc
Confidence 468999999999999999887542 111 00000 000000 00000 012
Q ss_pred EEEEEEEeCCCchhhhhhhHh---hhc--CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC
Q 048709 76 IIKAQIWDTAGQERYRAVTSA---YYR--GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA 150 (203)
Q Consensus 76 ~~~~~l~D~~g~~~~~~~~~~---~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 150 (203)
.+.+.|+||+|.......... .+. .....++|++.+. +...+...+..+.. ..+.-+|+||.|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~----~~~~gvILTKlDEt~--- 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH----AKPQGVVLTKLDETG--- 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh----hCCeEEEEecCcCcc---
Confidence 467899999995433221110 011 1234566777664 22223333333322 235679999999744
Q ss_pred CCHHHHHHHHHHcCCeEEEEec
Q 048709 151 VSAEDVVEFAEDQGLFFSEASA 172 (203)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~sa 172 (203)
..-.+.......+.++..++.
T Consensus 499 -~lG~aLsv~~~~~LPI~yvt~ 519 (559)
T PRK12727 499 -RFGSALSVVVDHQMPITWVTD 519 (559)
T ss_pred -chhHHHHHHHHhCCCEEEEeC
Confidence 456788888888888776663
No 398
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.22 E-value=3.1e-06 Score=65.25 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=36.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCC-CC-----CcceeeEEEEEEECCEEEEEEEEeCCCchhh
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDS-KS-----TIGVEFQTRTVTINSKIIKAQIWDTAGQERY 90 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 90 (203)
-.++++|++|+|||||+|.|.+....... .+ ...++.....+...+. ..++||||...+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 57999999999999999999986533211 11 1112222233333322 258999997554
No 399
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.21 E-value=3.1e-05 Score=61.64 Aligned_cols=86 Identities=8% Similarity=-0.002 Sum_probs=50.1
Q ss_pred EEEEEEeCCCchhhhhh----hHhhh--cCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC
Q 048709 77 IKAQIWDTAGQERYRAV----TSAYY--RGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA 150 (203)
Q Consensus 77 ~~~~l~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 150 (203)
+.+.|+||+|....... ...++ ...+.+++|+|++-.. ..+...+..+.. -.+--+|+||.|-..
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~----~~idglI~TKLDET~--- 391 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----IHIDGIVFTKFDETA--- 391 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcC----CCCCEEEEEcccCCC---
Confidence 57899999995432211 11222 2346788888876422 112222233222 112367899999754
Q ss_pred CCHHHHHHHHHHcCCeEEEEec
Q 048709 151 VSAEDVVEFAEDQGLFFSEASA 172 (203)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~sa 172 (203)
..-.+...+...++|+..++.
T Consensus 392 -k~G~iLni~~~~~lPIsyit~ 412 (436)
T PRK11889 392 -SSGELLKIPAVSSAPIVLMTD 412 (436)
T ss_pred -CccHHHHHHHHHCcCEEEEeC
Confidence 345677888888888776653
No 400
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.18 E-value=5.5e-06 Score=66.69 Aligned_cols=139 Identities=15% Similarity=0.140 Sum_probs=74.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcc-eeeEEEE---------------EE---E-----------CCEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIG-VEFQTRT---------------VT---I-----------NSKI 76 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~-~~~~~~~---------------~~---~-----------~~~~ 76 (203)
..-.|+++|++|+||||++..|.+...........+ ......+ +. . .-..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 346899999999999999998765311000000000 0000000 00 0 0012
Q ss_pred EEEEEEeCCCchhhhh----hhHhhh--cCCcEEEEEEeCCC-HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc
Q 048709 77 IKAQIWDTAGQERYRA----VTSAYY--RGALGAVVVYDITK-RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW 149 (203)
Q Consensus 77 ~~~~l~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 149 (203)
..+.++||+|...... ....+. ....-.++|++++. .....++. ..... --+--+|+||.|-..
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~---~~f~~----~~~~~~I~TKlDEt~-- 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVI---SAYQG----HGIHGCIITKVDEAA-- 340 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHH---HHhcC----CCCCEEEEEeeeCCC--
Confidence 4678999999543221 112221 12345678888874 44433332 22221 112367899999754
Q ss_pred CCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 048709 150 AVSAEDVVEFAEDQGLFFSEASALNGDNV 178 (203)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 178 (203)
..-.+..++...+.|+..++ +|.+|
T Consensus 341 --~~G~~l~~~~~~~lPi~yvt--~Gq~V 365 (420)
T PRK14721 341 --SLGIALDAVIRRKLVLHYVT--NGQKV 365 (420)
T ss_pred --CccHHHHHHHHhCCCEEEEE--CCCCc
Confidence 45567788888888877665 34444
No 401
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.18 E-value=4.5e-06 Score=67.66 Aligned_cols=86 Identities=15% Similarity=0.024 Sum_probs=50.1
Q ss_pred EEEEEEeCCCchhhhhh-h---Hh--hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC
Q 048709 77 IKAQIWDTAGQERYRAV-T---SA--YYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA 150 (203)
Q Consensus 77 ~~~~l~D~~g~~~~~~~-~---~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 150 (203)
..+.++||+|....... . .. .....|.+++|+|++.... .......+.... ...-+|+||.|...
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~---av~~a~~F~~~l---~i~gvIlTKlD~~a--- 246 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQ---AKNQAKAFHEAV---GIGGIIITKLDGTA--- 246 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHH---HHHHHHHHHhcC---CCCEEEEecccCCC---
Confidence 37899999995443211 1 11 1335788999999876421 112222222211 12367899999743
Q ss_pred CCHHHHHHHHHHcCCeEEEEec
Q 048709 151 VSAEDVVEFAEDQGLFFSEASA 172 (203)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~sa 172 (203)
..-.+.......+.|+..++.
T Consensus 247 -~~G~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 247 -KGGGALSAVAETGAPIKFIGT 267 (437)
T ss_pred -cccHHHHHHHHHCcCEEEEec
Confidence 234567777778888766654
No 402
>PRK00098 GTPase RsgA; Reviewed
Probab=98.18 E-value=3.6e-06 Score=65.27 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEF 53 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~ 53 (203)
-.++++|++|+|||||+|+|.+...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcC
Confidence 3689999999999999999987643
No 403
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.18 E-value=1.3e-05 Score=62.59 Aligned_cols=158 Identities=15% Similarity=0.125 Sum_probs=82.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCc----------------cCCCCCcceeeEEEEEE-------------------
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFC----------------FDSKSTIGVEFQTRTVT------------------- 71 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~------------------- 71 (203)
-.++|+|+|...+|||||+-.|+.++.+ .+.-.|..+.....-+.
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 4799999999999999999876543221 11212222111111111
Q ss_pred --ECCEEEEEEEEeCCCchhhhhhhHh--hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709 72 --INSKIIKAQIWDTAGQERYRAVTSA--YYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147 (203)
Q Consensus 72 --~~~~~~~~~l~D~~g~~~~~~~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 147 (203)
+++..--+.|+|.+|++.|-...-. .=+-.|...+++-++..-- --.++-+.. .....+|+.+|+||+|+..
T Consensus 212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi-GmTKEHLgL---ALaL~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII-GMTKEHLGL---ALALHVPVFVVVTKIDMCP 287 (641)
T ss_pred eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce-eccHHhhhh---hhhhcCcEEEEEEeeccCc
Confidence 1112234789999999887643211 1123344555555543110 000111111 1124788999999999754
Q ss_pred cc--CCCHHHHHHHHHH--------------------------cCCeEEEEecCCCCCHHHHHHHHHHHH
Q 048709 148 MW--AVSAEDVVEFAED--------------------------QGLFFSEASALNGDNVDTAFFRLLQEI 189 (203)
Q Consensus 148 ~~--~~~~~~~~~~~~~--------------------------~~~~~~~~sa~~~~~i~~~~~~i~~~~ 189 (203)
.. +.+...+..+.+. .-+|+|.+|-.+|.|++ ++.-.++.+
T Consensus 288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~-LLkmFLNll 356 (641)
T KOG0463|consen 288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLP-LLKMFLNLL 356 (641)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChH-HHHHHHhhc
Confidence 21 0111112222222 22578999999999988 544444443
No 404
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.17 E-value=4.5e-05 Score=59.64 Aligned_cols=85 Identities=9% Similarity=0.073 Sum_probs=48.8
Q ss_pred EEEEEEeCCCchhhhhhhHhhhc--------CCcEEEEEEeCCCHHHHHH-HHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709 77 IKAQIWDTAGQERYRAVTSAYYR--------GALGAVVVYDITKRQSFDH-VARGVEELRAHADSSIRIILIGNKSDLVD 147 (203)
Q Consensus 77 ~~~~l~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 147 (203)
....+++|.|......+...++. ..++++.|+|+.+...... ......++... =++++||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A------D~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA------DRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC------CEEEEeccccCC
Confidence 45678899997665555554432 2377999999976332211 11112223322 288999999876
Q ss_pred ccCCCHHHHHHHHHH--cCCeEEEEe
Q 048709 148 MWAVSAEDVVEFAED--QGLFFSEAS 171 (203)
Q Consensus 148 ~~~~~~~~~~~~~~~--~~~~~~~~s 171 (203)
. .+.+.+..+. ..++++.++
T Consensus 165 ~----~~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 165 E----AEKLRERLARINARAPVYTVV 186 (318)
T ss_pred H----HHHHHHHHHHhCCCCEEEEec
Confidence 3 2455555543 345666554
No 405
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=7.3e-06 Score=73.04 Aligned_cols=114 Identities=21% Similarity=0.207 Sum_probs=65.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCc--cCCC--CCcceeeEEEEEEECCEEEEEEEEeCCCch--------hhhhhhHhh
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFC--FDSK--STIGVEFQTRTVTINSKIIKAQIWDTAGQE--------RYRAVTSAY 97 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~~ 97 (203)
=-+|+|++|+||||++..- +.+++ .... ...+..+..+..-+. -.-+++||.|.. .-...|..+
T Consensus 127 Wy~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdwwf~---deaVlIDtaGry~~q~s~~~~~~~~W~~f 202 (1188)
T COG3523 127 WYMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDWWFT---DEAVLIDTAGRYITQDSADEVDRAEWLGF 202 (1188)
T ss_pred ceEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCcccc---cceEEEcCCcceecccCcchhhHHHHHHH
Confidence 3589999999999998642 22221 1110 011111111111122 245799999821 111223222
Q ss_pred ---------hcCCcEEEEEEeCCC-----HH----HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709 98 ---------YRGALGAVVVYDITK-----RQ----SFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147 (203)
Q Consensus 98 ---------~~~~d~~i~v~d~~~-----~~----s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 147 (203)
.+-.+++|+.+|+.+ +. ....++.-+.++.....-..|+++++||.|+..
T Consensus 203 L~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 203 LGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 245699999999875 11 122244446666666778899999999999865
No 406
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=6.2e-06 Score=67.83 Aligned_cols=117 Identities=16% Similarity=0.140 Sum_probs=76.8
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcC---C--CccCC-----------CCCcceeeEEEEEEECCEEEEEEEEeCCCchh
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKN---E--FCFDS-----------KSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~---~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 89 (203)
....+|.+.-.-.|||||+-++++.. . +.... ...-+++.+.....+......++++||||+..
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 34578899999999999999987531 1 10000 01122333333344444577899999999988
Q ss_pred hhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 048709 90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV 146 (203)
Q Consensus 90 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 146 (203)
|..-.+..++--|++++|+++...-.-+...-| ..+.+ -++|.+..+||+|..
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~-rQ~~r---y~vP~i~FiNKmDRm 169 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVESQTETVW-RQMKR---YNVPRICFINKMDRM 169 (721)
T ss_pred EEEEehhhhhhccCeEEEEEcccceehhhHHHH-HHHHh---cCCCeEEEEehhhhc
Confidence 887677778888999988888764322222233 33333 378999999999974
No 407
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.12 E-value=2.2e-06 Score=67.13 Aligned_cols=58 Identities=24% Similarity=0.440 Sum_probs=46.9
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCc
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 87 (203)
.+-++++|+|.|++||||+||+|..+...... ++.|.+...+.+..+. .+.|.|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg-~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVG-NVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCC-CCccchhhhhheeccC---CceeccCCce
Confidence 45699999999999999999999998875444 6667777777777664 5679999993
No 408
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.12 E-value=5.7e-05 Score=59.94 Aligned_cols=134 Identities=16% Similarity=0.212 Sum_probs=74.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcc-eeeEEEEE-------------------EE----------CCEEE
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIG-VEFQTRTV-------------------TI----------NSKII 77 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~-~~~~~~~~-------------------~~----------~~~~~ 77 (203)
.--|++||++|+||||-+-.|..+-.........+ ++..++++ .. .-...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 57899999999999999987754322000001110 11111110 00 00135
Q ss_pred EEEEEeCCCchhhhhh----hHhhhcCC--cEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCC
Q 048709 78 KAQIWDTAGQERYRAV----TSAYYRGA--LGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAV 151 (203)
Q Consensus 78 ~~~l~D~~g~~~~~~~----~~~~~~~~--d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 151 (203)
.++|+||.|...++.. ...++..+ .-+.+|++++.. .++++..+..+.... .--+++||.|-..
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~~----i~~~I~TKlDET~---- 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLFP----IDGLIFTKLDETT---- 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccCC----cceeEEEcccccC----
Confidence 7899999996655432 23444443 345677777653 333444444433322 1257799999643
Q ss_pred CHHHHHHHHHHcCCeEEEEe
Q 048709 152 SAEDVVEFAEDQGLFFSEAS 171 (203)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~s 171 (203)
..-.+.......+.|+-.++
T Consensus 353 s~G~~~s~~~e~~~PV~YvT 372 (407)
T COG1419 353 SLGNLFSLMYETRLPVSYVT 372 (407)
T ss_pred chhHHHHHHHHhCCCeEEEe
Confidence 45667777777777765554
No 409
>PRK10867 signal recognition particle protein; Provisional
Probab=98.10 E-value=7.1e-05 Score=60.74 Aligned_cols=87 Identities=15% Similarity=0.028 Sum_probs=49.1
Q ss_pred EEEEEEEeCCCchhhhh-hhH---hh--hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc
Q 048709 76 IIKAQIWDTAGQERYRA-VTS---AY--YRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW 149 (203)
Q Consensus 76 ~~~~~l~D~~g~~~~~~-~~~---~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 149 (203)
.+.+.|+||+|....+. ... .+ .-..+.+++|+|+...+. +......+.... + ..-+|+||.|...
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~---av~~a~~F~~~~--~-i~giIlTKlD~~~-- 254 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQD---AVNTAKAFNEAL--G-LTGVILTKLDGDA-- 254 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHH---HHHHHHHHHhhC--C-CCEEEEeCccCcc--
Confidence 35789999999542211 111 11 125677899999876432 222222222211 1 2367789999643
Q ss_pred CCCHHHHHHHHHHcCCeEEEEec
Q 048709 150 AVSAEDVVEFAEDQGLFFSEASA 172 (203)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~sa 172 (203)
..-.+.......++|+..+..
T Consensus 255 --rgG~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 255 --RGGAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred --cccHHHHHHHHHCcCEEEEeC
Confidence 123467777778888776654
No 410
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.09 E-value=1.8e-05 Score=64.09 Aligned_cols=87 Identities=14% Similarity=0.030 Sum_probs=50.7
Q ss_pred EEEEEEEeCCCchhhhh-hhH---h--hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc
Q 048709 76 IIKAQIWDTAGQERYRA-VTS---A--YYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW 149 (203)
Q Consensus 76 ~~~~~l~D~~g~~~~~~-~~~---~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 149 (203)
.+.+.++||+|...... ... . ..-..+.+++|+|+...+. .......+..... ..-+|+||.|...
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~---~~~~a~~f~~~v~---i~giIlTKlD~~~-- 253 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQD---AVNTAKTFNERLG---LTGVVLTKLDGDA-- 253 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHH---HHHHHHHHHhhCC---CCEEEEeCccCcc--
Confidence 35689999999533211 111 1 1235678899999875432 2222233332221 2467799999643
Q ss_pred CCCHHHHHHHHHHcCCeEEEEec
Q 048709 150 AVSAEDVVEFAEDQGLFFSEASA 172 (203)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~sa 172 (203)
..-.+...+...++|+..+..
T Consensus 254 --~~G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 254 --RGGAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred --cccHHHHHHHHHCcCEEEEeC
Confidence 223477777788888777654
No 411
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=98.06 E-value=1.9e-05 Score=57.99 Aligned_cols=63 Identities=30% Similarity=0.272 Sum_probs=37.7
Q ss_pred hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeE
Q 048709 96 AYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFF 167 (203)
Q Consensus 96 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 167 (203)
...+++|.+|+|+|.+. .++...++. ..+....+ -.++.+|+||+|-. ...+...+...+..+
T Consensus 151 g~~~~vD~vivVvDpS~-~sl~taeri-~~L~~elg-~k~i~~V~NKv~e~------e~~~~~~~~~~~~~v 213 (255)
T COG3640 151 GTIEGVDLVIVVVDPSY-KSLRTAERI-KELAEELG-IKRIFVVLNKVDEE------EELLRELAEELGLEV 213 (255)
T ss_pred ccccCCCEEEEEeCCcH-HHHHHHHHH-HHHHHHhC-CceEEEEEeeccch------hHHHHhhhhccCCeE
Confidence 34678999999999984 444444332 22222221 26799999999953 233444455555433
No 412
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.06 E-value=3.8e-05 Score=58.75 Aligned_cols=91 Identities=21% Similarity=0.176 Sum_probs=64.2
Q ss_pred HhhhcCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecC
Q 048709 95 SAYYRGALGAVVVYDITKRQ-SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASAL 173 (203)
Q Consensus 95 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 173 (203)
+.-..+.|-+++|+++.+|+ +...+.+++-.... .++..++++||+|+.+......++........+++++.+|++
T Consensus 74 Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~ 150 (301)
T COG1162 74 RPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAK 150 (301)
T ss_pred CCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCc
Confidence 33445567777777777764 55556555544443 466678889999998754333345666778899999999999
Q ss_pred CCCCHHHHHHHHHHH
Q 048709 174 NGDNVDTAFFRLLQE 188 (203)
Q Consensus 174 ~~~~i~~~~~~i~~~ 188 (203)
++.+++++...+...
T Consensus 151 ~~~~~~~l~~~l~~~ 165 (301)
T COG1162 151 NGDGLEELAELLAGK 165 (301)
T ss_pred CcccHHHHHHHhcCC
Confidence 999999888776544
No 413
>PRK13695 putative NTPase; Provisional
Probab=98.05 E-value=0.00015 Score=51.69 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
++|+++|.+|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998654
No 414
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.03 E-value=0.0001 Score=58.43 Aligned_cols=86 Identities=15% Similarity=0.048 Sum_probs=49.4
Q ss_pred EEEEEEeCCCchhhhh----hhHhhhc--CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC
Q 048709 77 IKAQIWDTAGQERYRA----VTSAYYR--GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA 150 (203)
Q Consensus 77 ~~~~l~D~~g~~~~~~----~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 150 (203)
+.+.|+||+|...... -...+.. ..+.+++|.++.. ...++...+.... .-.+--+|+||.|-..
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~----~l~i~glI~TKLDET~--- 356 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLA----EIPIDGFIITKMDETT--- 356 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcC----cCCCCEEEEEcccCCC---
Confidence 5789999999643221 1122222 3356677777643 2222322222211 1123467899999754
Q ss_pred CCHHHHHHHHHHcCCeEEEEec
Q 048709 151 VSAEDVVEFAEDQGLFFSEASA 172 (203)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~sa 172 (203)
..-.+...+...+.|+..++.
T Consensus 357 -~~G~~Lsv~~~tglPIsylt~ 377 (407)
T PRK12726 357 -RIGDLYTVMQETNLPVLYMTD 377 (407)
T ss_pred -CccHHHHHHHHHCCCEEEEec
Confidence 455678888888888777664
No 415
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.03 E-value=0.00014 Score=59.19 Aligned_cols=85 Identities=18% Similarity=0.180 Sum_probs=50.2
Q ss_pred EEEEEEeCCCchhhh----hhhHhhhc---CCcEEEEEEeCCCH-HHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcc
Q 048709 77 IKAQIWDTAGQERYR----AVTSAYYR---GALGAVVVYDITKR-QSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148 (203)
Q Consensus 77 ~~~~l~D~~g~~~~~----~~~~~~~~---~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 148 (203)
..+.|+||+|..... .....++. ...-+++|++++-. ..+..+ +..+... + +--+|+||.|-..
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~---~~~f~~~---~-~~~vI~TKlDet~- 371 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDI---YKHFSRL---P-LDGLIFTKLDETS- 371 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHH---HHHhCCC---C-CCEEEEecccccc-
Confidence 578999999964332 12223333 22356777887643 333332 2222211 1 2358899999754
Q ss_pred cCCCHHHHHHHHHHcCCeEEEEec
Q 048709 149 WAVSAEDVVEFAEDQGLFFSEASA 172 (203)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~sa 172 (203)
..-.+..++...++|+..++.
T Consensus 372 ---~~G~i~~~~~~~~lPv~yit~ 392 (424)
T PRK05703 372 ---SLGSILSLLIESGLPISYLTN 392 (424)
T ss_pred ---cccHHHHHHHHHCCCEEEEeC
Confidence 345688888889998776663
No 416
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.01 E-value=1.5e-05 Score=63.97 Aligned_cols=134 Identities=17% Similarity=0.219 Sum_probs=71.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC-------Cc-cCCC--------------CCcceeeEEEE-E-----EECCEEEEE
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNE-------FC-FDSK--------------STIGVEFQTRT-V-----TINSKIIKA 79 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~-------~~-~~~~--------------~~~~~~~~~~~-~-----~~~~~~~~~ 79 (203)
..-++++|++||||||++..|...- .. ...+ ...+....... . ........+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 3568999999999999999886421 00 0000 00011111000 0 001124577
Q ss_pred EEEeCCCchhhhh----hhHhhhc-----CCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc
Q 048709 80 QIWDTAGQERYRA----VTSAYYR-----GALGAVVVYDITKRQ-SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW 149 (203)
Q Consensus 80 ~l~D~~g~~~~~~----~~~~~~~-----~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 149 (203)
.++||+|...... -+..++. ...-.++|+|++... ....+.. .... --+--+|+||.|-..
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~---~f~~----~~~~glIlTKLDEt~-- 373 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLK---AYES----LNYRRILLTKLDEAD-- 373 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHH---HhcC----CCCCEEEEEcccCCC--
Confidence 9999999542211 1122222 123578888887643 3333222 2211 112367899999754
Q ss_pred CCCHHHHHHHHHHcCCeEEEEec
Q 048709 150 AVSAEDVVEFAEDQGLFFSEASA 172 (203)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~sa 172 (203)
..-.+...+...+.|+..++.
T Consensus 374 --~~G~il~i~~~~~lPI~ylt~ 394 (432)
T PRK12724 374 --FLGSFLELADTYSKSFTYLSV 394 (432)
T ss_pred --CccHHHHHHHHHCCCEEEEec
Confidence 344577778888888766654
No 417
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.99 E-value=3.8e-05 Score=52.73 Aligned_cols=106 Identities=14% Similarity=0.098 Sum_probs=60.4
Q ss_pred EEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC
Q 048709 33 VIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITK 112 (203)
Q Consensus 33 vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 112 (203)
.-|.+|+|||++--.+...-. ....++.-.+..... ....+.+.++|+|+.. .......+..+|.++++.+.+.
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D~~~---~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~ 78 (139)
T cd02038 5 TSGKGGVGKTNISANLALALA-KLGKRVLLLDADLGL---ANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEP 78 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECCCCC---CCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCCh
Confidence 456789999998765532110 000011111111000 0111678999999743 3334567889999999999874
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 048709 113 RQSFDHVARGVEELRAHADSSIRIILIGNKSDLV 146 (203)
Q Consensus 113 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 146 (203)
.++..+...++.+.... ...++.+|+|+++..
T Consensus 79 -~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~ 110 (139)
T cd02038 79 -TSITDAYALIKKLAKQL-RVLNFRVVVNRAESP 110 (139)
T ss_pred -hHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence 44444444445544332 345678999999754
No 418
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.99 E-value=6.6e-05 Score=48.71 Aligned_cols=82 Identities=15% Similarity=0.109 Sum_probs=49.9
Q ss_pred EEEEc-CCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 048709 31 VVVIG-DSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD 109 (203)
Q Consensus 31 i~vvG-~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 109 (203)
|+|.| ..|+||||+...+...-.. ...++ ..+..+.. +.+.++|+|+..... ....+..+|.++++++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~v-------l~~d~d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRV-------LLIDLDPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcE-------EEEeCCCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence 56777 5799999998776432211 11111 11112211 678999999864332 3367788999999998
Q ss_pred CCCHHHHHHHHHHHH
Q 048709 110 ITKRQSFDHVARGVE 124 (203)
Q Consensus 110 ~~~~~s~~~~~~~~~ 124 (203)
.+ ..++..+..+++
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 76 445555555554
No 419
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.98 E-value=4.2e-05 Score=54.23 Aligned_cols=134 Identities=19% Similarity=0.191 Sum_probs=67.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeC-CCc---------------------
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDT-AGQ--------------------- 87 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~-~g~--------------------- 87 (203)
+|.+.|++|+||||+++.+...-... ..+. ..+.+..+.-++...-|.+.|. .|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v--~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPV--GGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHT-CGGE--EEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhcc-CCcc--ceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 68999999999999999987532111 1011 3344444445555555666666 331
Q ss_pred -hhhhhh----hHhhhcCCcEEEEEEeCCCH-HHHHHHHHHHHHHHhhcCCCCcEEEEEeCC-CCCcccCCCHHHHHHHH
Q 048709 88 -ERYRAV----TSAYYRGALGAVVVYDITKR-QSFDHVARGVEELRAHADSSIRIILIGNKS-DLVDMWAVSAEDVVEFA 160 (203)
Q Consensus 88 -~~~~~~----~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~-D~~~~~~~~~~~~~~~~ 160 (203)
+.+... ....+..+| ++|+|=-.+ +.. ...|.+.+......+.|++.++-+. +. ..+.++.
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl~--~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~ 145 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMELK--SPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIK 145 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---STTCCC---CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhhc--CHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHH
Confidence 111110 111123444 666664221 110 1234444444444678888888666 32 1355566
Q ss_pred HHcCCeEEEEecCCCCCH
Q 048709 161 EDQGLFFSEASALNGDNV 178 (203)
Q Consensus 161 ~~~~~~~~~~sa~~~~~i 178 (203)
...++.++.++..+.+.+
T Consensus 146 ~~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 146 RRPDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTTTSEEEE--TTTCCCH
T ss_pred hCCCcEEEEeChhHHhhH
Confidence 677888998877665554
No 420
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.95 E-value=1.1e-05 Score=57.92 Aligned_cols=80 Identities=21% Similarity=0.150 Sum_probs=42.6
Q ss_pred EEEEEEeCCCchhhhhhh---Hh--hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCC
Q 048709 77 IKAQIWDTAGQERYRAVT---SA--YYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAV 151 (203)
Q Consensus 77 ~~~~l~D~~g~~~~~~~~---~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 151 (203)
....++++.|......+. .. ..-..+.++.|+|+.+......+...+....... =++++||+|+.+.. .
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A-----DvIvlnK~D~~~~~-~ 158 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA-----DVIVLNKIDLVSDE-Q 158 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT------SEEEEE-GGGHHHH--
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc-----CEEEEeccccCChh-h
Confidence 466778888854444430 01 1234578999999977543344433332222221 28899999998743 2
Q ss_pred CHHHHHHHHHH
Q 048709 152 SAEDVVEFAED 162 (203)
Q Consensus 152 ~~~~~~~~~~~ 162 (203)
..+.+.+..+.
T Consensus 159 ~i~~~~~~ir~ 169 (178)
T PF02492_consen 159 KIERVREMIRE 169 (178)
T ss_dssp -HHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 22455555443
No 421
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.94 E-value=8.6e-05 Score=48.48 Aligned_cols=103 Identities=17% Similarity=0.103 Sum_probs=58.6
Q ss_pred EEEE-cCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 048709 31 VVVI-GDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD 109 (203)
Q Consensus 31 i~vv-G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 109 (203)
|+++ +..|+||||+...|...-.......+.-.+..... .-.+.++|+|+.... .....+..+|.++++.+
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~------~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~ 73 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF------GDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQ 73 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCC------CCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEec
Confidence 3444 45889999987766432111101111111111110 016899999985433 23456788999999887
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCC-CCcEEEEEeC
Q 048709 110 ITKRQSFDHVARGVEELRAHADS-SIRIILIGNK 142 (203)
Q Consensus 110 ~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK 142 (203)
.+. .+...+..+++.+...... ...+.+|+|+
T Consensus 74 ~~~-~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 74 QDL-PSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CCh-HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 764 5566666666666655433 4456677774
No 422
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.91 E-value=0.0003 Score=53.62 Aligned_cols=85 Identities=8% Similarity=-0.000 Sum_probs=50.2
Q ss_pred EEEEEEEeCCCchhhhh-hhH---hhh--cCCcEEEEEEeCCC-HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcc
Q 048709 76 IIKAQIWDTAGQERYRA-VTS---AYY--RGALGAVVVYDITK-RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148 (203)
Q Consensus 76 ~~~~~l~D~~g~~~~~~-~~~---~~~--~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 148 (203)
.+.+.++||+|....+. ... .++ ...+-+++|+|++. .... ...+..+.. -.+--+|+||.|-..
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~---~~~~~~f~~----~~~~~~I~TKlDet~- 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM---IEIITNFKD----IHIDGIVFTKFDETA- 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHH---HHHHHHhCC----CCCCEEEEEeecCCC-
Confidence 35789999999653221 111 122 23456889999864 3222 222222222 123467899999754
Q ss_pred cCCCHHHHHHHHHHcCCeEEEEe
Q 048709 149 WAVSAEDVVEFAEDQGLFFSEAS 171 (203)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~s 171 (203)
..-.+...+...+.|+..++
T Consensus 226 ---~~G~~l~~~~~~~~Pi~~it 245 (270)
T PRK06731 226 ---SSGELLKIPAVSSAPIVLMT 245 (270)
T ss_pred ---CccHHHHHHHHHCcCEEEEe
Confidence 34567777888888877665
No 423
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.90 E-value=0.00018 Score=59.09 Aligned_cols=89 Identities=19% Similarity=0.175 Sum_probs=50.0
Q ss_pred EEEEEEeCCCchhhhhh---hHhhhcCC---cEEEEEEeCCC-HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc
Q 048709 77 IKAQIWDTAGQERYRAV---TSAYYRGA---LGAVVVYDITK-RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW 149 (203)
Q Consensus 77 ~~~~l~D~~g~~~~~~~---~~~~~~~~---d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 149 (203)
..+.++||+|....... ....+... .-.++|+|++. ...+.++...+. .....-+|+||.|-..
T Consensus 335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~-------~~~~~g~IlTKlDet~-- 405 (484)
T PRK06995 335 KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYR-------GPGLAGCILTKLDEAA-- 405 (484)
T ss_pred CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhc-------cCCCCEEEEeCCCCcc--
Confidence 35789999994332211 11122221 22678888864 333332222211 1223467799999744
Q ss_pred CCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 048709 150 AVSAEDVVEFAEDQGLFFSEASALNGDNV 178 (203)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 178 (203)
..-.+..++...++|+..++ +|.+|
T Consensus 406 --~~G~~l~i~~~~~lPI~yvt--~GQ~V 430 (484)
T PRK06995 406 --SLGGALDVVIRYKLPLHYVS--NGQRV 430 (484)
T ss_pred --cchHHHHHHHHHCCCeEEEe--cCCCC
Confidence 45567888888898877665 45555
No 424
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.90 E-value=1.8e-05 Score=60.34 Aligned_cols=62 Identities=21% Similarity=0.350 Sum_probs=39.4
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCc----cCCCCCcceeeEEEE-EEECCEEEEEEEEeCCCc
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFC----FDSKSTIGVEFQTRT-VTINSKIIKAQIWDTAGQ 87 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~l~D~~g~ 87 (203)
.+..+++.|+|.||+|||||+|++...... ....+..|++..+.. +.+.... .+.+.||||.
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence 456799999999999999999987543221 122233344444433 3333222 4789999993
No 425
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.88 E-value=0.00012 Score=63.05 Aligned_cols=140 Identities=12% Similarity=0.099 Sum_probs=74.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccC-CCC--CcceeeE----------------EEEEEE-----------CCEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFD-SKS--TIGVEFQ----------------TRTVTI-----------NSKIIK 78 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~-~~~--~~~~~~~----------------~~~~~~-----------~~~~~~ 78 (203)
--|+++|+.|+||||++..|.+.-.... ... ..+.+.+ ...... .-....
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 4689999999999999998865321100 000 0000000 000000 011346
Q ss_pred EEEEeCCCchhhhh-hh---Hhh--hcCCcEEEEEEeCCC-HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCC
Q 048709 79 AQIWDTAGQERYRA-VT---SAY--YRGALGAVVVYDITK-RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAV 151 (203)
Q Consensus 79 ~~l~D~~g~~~~~~-~~---~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 151 (203)
++|+||+|....+. +. ... ....+-.++|+|++. .+.+.++...+... ... -+--+|+||.|-..
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~---~~~-~i~glIlTKLDEt~---- 337 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHG---AGE-DVDGCIITKLDEAT---- 337 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhc---ccC-CCCEEEEeccCCCC----
Confidence 89999999433221 11 111 123345788888875 33444333222221 100 13367899999754
Q ss_pred CHHHHHHHHHHcCCeEEEEecCCCCCH
Q 048709 152 SAEDVVEFAEDQGLFFSEASALNGDNV 178 (203)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~sa~~~~~i 178 (203)
..-.+..+....++|+..++ +|.+|
T Consensus 338 ~~G~iL~i~~~~~lPI~yit--~GQ~V 362 (767)
T PRK14723 338 HLGPALDTVIRHRLPVHYVS--TGQKV 362 (767)
T ss_pred CccHHHHHHHHHCCCeEEEe--cCCCC
Confidence 34567778888888877666 35555
No 426
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.83 E-value=0.00024 Score=45.02 Aligned_cols=69 Identities=17% Similarity=0.122 Sum_probs=44.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhh-hHhhhcCCcEEEEEEe
Q 048709 31 VVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV-TSAYYRGALGAVVVYD 109 (203)
Q Consensus 31 i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-~~~~~~~~d~~i~v~d 109 (203)
+++.|..|+||||+...+...-..... ....++ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~----------~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGK----------RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC----------eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 678899999999999887553221111 111222 6789999985432221 1455678889999988
Q ss_pred CCCH
Q 048709 110 ITKR 113 (203)
Q Consensus 110 ~~~~ 113 (203)
....
T Consensus 68 ~~~~ 71 (99)
T cd01983 68 PEAL 71 (99)
T ss_pred Cchh
Confidence 7753
No 427
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.81 E-value=2e-05 Score=61.96 Aligned_cols=84 Identities=21% Similarity=0.268 Sum_probs=53.5
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh--hhhHhhhcCCcE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR--AVTSAYYRGALG 103 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--~~~~~~~~~~d~ 103 (203)
-..+.|+++|.|++||||+||.|-..++.... |..|.+.....++. ...+.|+||||..... +-....+ .+
T Consensus 305 kkqISVGfiGYPNvGKSSiINTLR~KkVCkvA-PIpGETKVWQYItL---mkrIfLIDcPGvVyps~dset~ivL---kG 377 (572)
T KOG2423|consen 305 KKQISVGFIGYPNVGKSSIINTLRKKKVCKVA-PIPGETKVWQYITL---MKRIFLIDCPGVVYPSSDSETDIVL---KG 377 (572)
T ss_pred ccceeeeeecCCCCchHHHHHHHhhccccccc-CCCCcchHHHHHHH---HhceeEecCCCccCCCCCchHHHHh---hc
Confidence 34699999999999999999999998876554 44443322222222 1256799999943222 2222232 35
Q ss_pred EEEEEeCCCHHHH
Q 048709 104 AVVVYDITKRQSF 116 (203)
Q Consensus 104 ~i~v~d~~~~~s~ 116 (203)
++-|-.+.+++.+
T Consensus 378 vVRVenv~~pe~y 390 (572)
T KOG2423|consen 378 VVRVENVKNPEDY 390 (572)
T ss_pred eeeeeecCCHHHH
Confidence 6777777776543
No 428
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=0.00024 Score=56.91 Aligned_cols=91 Identities=12% Similarity=0.047 Sum_probs=52.8
Q ss_pred EEEEEEEeCCCchhhhh----hhHhhhcCC--c-EEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcc
Q 048709 76 IIKAQIWDTAGQERYRA----VTSAYYRGA--L-GAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148 (203)
Q Consensus 76 ~~~~~l~D~~g~~~~~~----~~~~~~~~~--d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 148 (203)
.+.+.++||+|....+. -...++... + -.++|+|++... ..+...+...... -+--+|+||.|-..
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~~----~~~~~I~TKlDet~- 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSPF----SYKTVIFTKLDETT- 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcCC----CCCEEEEEeccCCC-
Confidence 35789999999543221 112233322 3 578899988642 2233333332211 13467899999754
Q ss_pred cCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 048709 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNV 178 (203)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 178 (203)
..-.+..++...+.|+..++ +|.+|
T Consensus 327 ---~~G~~l~~~~~~~~Pi~yit--~Gq~v 351 (388)
T PRK12723 327 ---CVGNLISLIYEMRKEVSYVT--DGQIV 351 (388)
T ss_pred ---cchHHHHHHHHHCCCEEEEe--CCCCC
Confidence 45567778888888876655 35555
No 429
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=2.4e-05 Score=61.60 Aligned_cols=156 Identities=22% Similarity=0.193 Sum_probs=89.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCC--------------CccC-----C----------CCCcceeeEEEEEEECCEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNE--------------FCFD-----S----------KSTIGVEFQTRTVTINSKII 77 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~--------------~~~~-----~----------~~~~~~~~~~~~~~~~~~~~ 77 (203)
..+++.|+|...+||||+-..+.... .... | .+.-+.+...-+..+.-...
T Consensus 78 ~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~~ 157 (501)
T KOG0459|consen 78 EHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETENK 157 (501)
T ss_pred CCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecce
Confidence 46999999999999999887663310 0000 0 00111111112222222345
Q ss_pred EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCH---HHHHHHHHHHH--HHHhhcCCCCcEEEEEeCCCCCcc-c-C
Q 048709 78 KAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKR---QSFDHVARGVE--ELRAHADSSIRIILIGNKSDLVDM-W-A 150 (203)
Q Consensus 78 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~--~~~~~~~~~~p~ivv~nK~D~~~~-~-~ 150 (203)
++.+.|+||+..|-...-.-..++|+.++|+++... ..|+.--+... .+.+.. .-...|+++||+|.+.. + .
T Consensus 158 ~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~-gv~~lVv~vNKMddPtvnWs~ 236 (501)
T KOG0459|consen 158 RFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-GVKHLIVLINKMDDPTVNWSN 236 (501)
T ss_pred eEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhh-ccceEEEEEEeccCCccCcch
Confidence 789999999888776555556788888999988531 12222111111 112211 23457899999997642 1 1
Q ss_pred CCH----HHHHHHHHHcC------CeEEEEecCCCCCHHHHHH
Q 048709 151 VSA----EDVVEFAEDQG------LFFSEASALNGDNVDTAFF 183 (203)
Q Consensus 151 ~~~----~~~~~~~~~~~------~~~~~~sa~~~~~i~~~~~ 183 (203)
.-+ +.+..|+...+ ..++++|..+|.++.+...
T Consensus 237 eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 237 ERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred hhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 112 23344444333 4589999999999887553
No 430
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.80 E-value=2.6e-05 Score=57.22 Aligned_cols=69 Identities=13% Similarity=0.101 Sum_probs=38.6
Q ss_pred EEEEEEeCCCchhhh----hhh--HhhhcCCcEEEEEEeC------CCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 048709 77 IKAQIWDTAGQERYR----AVT--SAYYRGALGAVVVYDI------TKRQSFDHVARGVEELRAHADSSIRIILIGNKSD 144 (203)
Q Consensus 77 ~~~~l~D~~g~~~~~----~~~--~~~~~~~d~~i~v~d~------~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 144 (203)
-.+.++|+|||.++- .++ -.++...|.=+.++.. ++|..|-. .++-.+.....-..|-+=|+.|+|
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS--~lL~sl~tMl~melphVNvlSK~D 174 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFIS--SLLVSLATMLHMELPHVNVLSKAD 174 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHH--HHHHHHHHHHhhcccchhhhhHhH
Confidence 357899999975431 111 1223344443333333 34555433 344444444445778899999999
Q ss_pred CCc
Q 048709 145 LVD 147 (203)
Q Consensus 145 ~~~ 147 (203)
+..
T Consensus 175 l~~ 177 (290)
T KOG1533|consen 175 LLK 177 (290)
T ss_pred HHH
Confidence 864
No 431
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.79 E-value=0.00043 Score=54.77 Aligned_cols=98 Identities=20% Similarity=0.144 Sum_probs=53.0
Q ss_pred EEEEEEeCCCchhhhhhhHhhh-------cCCcEEEEEEeCCCHHH--H-------H-------------HHHHH-HHHH
Q 048709 77 IKAQIWDTAGQERYRAVTSAYY-------RGALGAVVVYDITKRQS--F-------D-------------HVARG-VEEL 126 (203)
Q Consensus 77 ~~~~l~D~~g~~~~~~~~~~~~-------~~~d~~i~v~d~~~~~s--~-------~-------------~~~~~-~~~~ 126 (203)
....++++.|......+...+. -..|+++.|+|+.+... + . .+..+ ..++
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi 172 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL 172 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence 4567889999666555554431 13478999999975311 0 0 01111 2222
Q ss_pred HhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHH-cC--CeEEEEecCCCCCHHHHHH
Q 048709 127 RAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAED-QG--LFFSEASALNGDNVDTAFF 183 (203)
Q Consensus 127 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~--~~~~~~sa~~~~~i~~~~~ 183 (203)
... =++++||+|+.+.. ..+.+.+..+. .. .++++++ ........++.
T Consensus 173 ~~A------D~IvlnK~Dl~~~~--~l~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~ 223 (341)
T TIGR02475 173 ACA------DLVILNKADLLDAA--GLARVRAEIAAELPRAVKIVEAS-HGEVDARVLLG 223 (341)
T ss_pred HhC------CEEEEeccccCCHH--HHHHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhC
Confidence 222 38899999988632 23445555544 22 3566654 23344444443
No 432
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.71 E-value=3.1e-05 Score=51.62 Aligned_cols=22 Identities=18% Similarity=0.453 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~ 51 (203)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
No 433
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.70 E-value=0.00027 Score=40.15 Aligned_cols=47 Identities=17% Similarity=0.155 Sum_probs=28.9
Q ss_pred hhcCCcEEEEEEeCCCHH--HHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 048709 97 YYRGALGAVVVYDITKRQ--SFDHVARGVEELRAHADSSIRIILIGNKSD 144 (203)
Q Consensus 97 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 144 (203)
.-+-.++++|++|++... +.++-..++..+.... .+.|+++|+||+|
T Consensus 10 L~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D 58 (58)
T PF06858_consen 10 LAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID 58 (58)
T ss_dssp GGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred HHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence 345568899999999843 4444455666666655 4789999999998
No 434
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=6.4e-05 Score=59.05 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=30.8
Q ss_pred EEEEEEEEeCCCchhhh-hhhHhh-----hcCCcEEEEEEeCCCHHHHHHHHHHHH
Q 048709 75 KIIKAQIWDTAGQERYR-AVTSAY-----YRGALGAVVVYDITKRQSFDHVARGVE 124 (203)
Q Consensus 75 ~~~~~~l~D~~g~~~~~-~~~~~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~ 124 (203)
.++.+.|.||+|..... .+.+.. .-..|-+|+|.|++-.++-+.....+.
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk 237 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFK 237 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHH
Confidence 45789999999953322 222221 235688999999987665444333333
No 435
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.69 E-value=0.0032 Score=44.28 Aligned_cols=140 Identities=11% Similarity=0.085 Sum_probs=95.2
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEE-eCCCchhhhhhhHhhhcCCcE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIW-DTAGQERYRAVTSAYYRGALG 103 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-D~~g~~~~~~~~~~~~~~~d~ 103 (203)
..+.-.|++||..+.++..|..++...+.. +. +++++- -.|-....... =...|.
T Consensus 12 ~ln~atiLLVg~e~~~~~~LA~a~l~~~~~----------~~----------l~Vh~a~sLPLp~e~~~l----RprIDl 67 (176)
T PF11111_consen 12 ELNTATILLVGTEEALLQQLAEAMLEEDKE----------FK----------LKVHLAKSLPLPSENNNL----RPRIDL 67 (176)
T ss_pred CcceeEEEEecccHHHHHHHHHHHHhhccc----------ee----------EEEEEeccCCCcccccCC----CceeEE
Confidence 345789999999999999999999862210 01 111111 11111111111 224699
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709 104 AVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF 183 (203)
Q Consensus 104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 183 (203)
++|++|.....++...+.-+..+....-.+. +.++.+-....+...+..+++.+++..+..|++.+.-....+...+-+
T Consensus 68 IVFvinl~sk~SL~~ve~SL~~vd~~fflGK-VCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAq 146 (176)
T PF11111_consen 68 IVFVINLHSKYSLQSVEASLSHVDPSFFLGK-VCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQ 146 (176)
T ss_pred EEEEEecCCcccHHHHHHHHhhCChhhhccc-eEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHH
Confidence 9999999999998888776666544333332 456666666666668899999999999999999999888877776666
Q ss_pred HHHHHH
Q 048709 184 RLLQEI 189 (203)
Q Consensus 184 ~i~~~~ 189 (203)
.+++.+
T Consensus 147 RLL~~l 152 (176)
T PF11111_consen 147 RLLRML 152 (176)
T ss_pred HHHHHH
Confidence 665554
No 436
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.68 E-value=4.7e-05 Score=44.25 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 048709 30 KVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~ 50 (203)
-.+|.|+.||||||++.++.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998754
No 437
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.65 E-value=5.3e-05 Score=55.10 Aligned_cols=25 Identities=40% Similarity=0.406 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEF 53 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~ 53 (203)
=.++++|++|||||||++.+-+.+.
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCcC
Confidence 4689999999999999999987664
No 438
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.63 E-value=0.0024 Score=45.45 Aligned_cols=84 Identities=15% Similarity=-0.012 Sum_probs=51.0
Q ss_pred EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHH
Q 048709 78 KAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVV 157 (203)
Q Consensus 78 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 157 (203)
.+.++|+|+..... ....+..+|.++++++.+. .+...+..+++.+... ......+++|+.+.... ...+...
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~--~~~~~~iv~N~~~~~~~--~~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL--GIKVVGVIVNRVRPDMV--EGGDMVE 136 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc--CCceEEEEEeCCccccc--chhhHHH
Confidence 68999999754332 3445688999999998874 3444444555554442 12346789999986532 2222234
Q ss_pred HHHHHcCCeEE
Q 048709 158 EFAEDQGLFFS 168 (203)
Q Consensus 158 ~~~~~~~~~~~ 168 (203)
.+....+.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 44455666654
No 439
>PRK07261 topology modulation protein; Provisional
Probab=97.63 E-value=4.4e-05 Score=54.34 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
.+|+|+|++|||||||.+.|..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 440
>PRK08118 topology modulation protein; Reviewed
Probab=97.62 E-value=5e-05 Score=53.87 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~ 51 (203)
.+|+|+|++|||||||.+.|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999988753
No 441
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.61 E-value=5e-05 Score=54.35 Aligned_cols=23 Identities=22% Similarity=0.653 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~ 51 (203)
++|+|+|+|||||||+...|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999876
No 442
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.60 E-value=0.0021 Score=45.99 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~ 52 (203)
.=.++++|+.|+|||||++.+.+..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3479999999999999999998854
No 443
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=97.58 E-value=0.0014 Score=48.49 Aligned_cols=103 Identities=10% Similarity=0.009 Sum_probs=65.4
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHH--HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCH
Q 048709 76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQ--SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSA 153 (203)
Q Consensus 76 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 153 (203)
.+.+.|+|+.|..... ....+..+|.+|+=.-.+..+ .-.....|+..+.+..++.+|.-|+.|++.-... ....
T Consensus 83 ~~d~VlvDleG~as~~--~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~~-~~~~ 159 (231)
T PF07015_consen 83 GFDFVLVDLEGGASEL--NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAARL-TRAQ 159 (231)
T ss_pred CCCEEEEeCCCCCchh--HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcchh-hHHH
Confidence 4678999999854322 344567799998877666422 2222345666666666688999999999974321 1112
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709 154 EDVVEFAEDQGLFFSEASALNGDNVDTAFF 183 (203)
Q Consensus 154 ~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 183 (203)
..+.++.. ++|++.+...+..-+.+++.
T Consensus 160 ~~~~e~~~--~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 160 RIISEQLE--SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred HHHHHHHh--cCCccccccccHHHHHHHHH
Confidence 22333333 58888888877766666665
No 444
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.58 E-value=0.00083 Score=45.67 Aligned_cols=25 Identities=12% Similarity=0.266 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~ 52 (203)
...++++|++|+|||++++.+...-
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999987644
No 445
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.58 E-value=7.4e-05 Score=55.49 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEF 53 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~ 53 (203)
-|+++|++|||||||+|.+.+-..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 489999999999999999987543
No 446
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.57 E-value=6.1e-05 Score=51.72 Aligned_cols=20 Identities=30% Similarity=0.615 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 048709 31 VVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 31 i~vvG~~~sGKStli~~l~~ 50 (203)
|+++|+||||||||++.|..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999874
No 447
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.52 E-value=6.2e-05 Score=53.07 Aligned_cols=22 Identities=18% Similarity=0.590 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~ 51 (203)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999765
No 448
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.52 E-value=8.6e-05 Score=50.64 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~ 52 (203)
=.++|+|+.|||||||++.|.+..
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEEccCCCccccceeeecccc
Confidence 368999999999999999998854
No 449
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.51 E-value=0.0001 Score=54.36 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEF 53 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~ 53 (203)
-++++|++|||||||+|.+-+-..
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 589999999999999999877554
No 450
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.00024 Score=57.77 Aligned_cols=130 Identities=18% Similarity=0.207 Sum_probs=78.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCC------------Cc----cCCCCCcceeeEEEEEEE--------------CCEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNE------------FC----FDSKSTIGVEFQTRTVTI--------------NSKI 76 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~------------~~----~~~~~~~~~~~~~~~~~~--------------~~~~ 76 (203)
+-.++-|+....-|||||..+|..+. +. .+..+..++..+...+.+ ++..
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~ 97 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG 97 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence 44678889999999999999986431 10 111112222111111111 3456
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc-ccCCCHHH
Q 048709 77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD-MWAVSAED 155 (203)
Q Consensus 77 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~ 155 (203)
+-++++|.||+..|.+-..+.++-.|+.++|+|--+.--.+.---+.+.+. .++.-++++||.|.+- .-+...++
T Consensus 98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~----ERIkPvlv~NK~DRAlLELq~~~Ee 173 (842)
T KOG0469|consen 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIA----ERIKPVLVMNKMDRALLELQLSQEE 173 (842)
T ss_pred eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHH----hhccceEEeehhhHHHHhhcCCHHH
Confidence 778999999999999888888999999999999876422111111112222 2333467899999642 12455555
Q ss_pred HHHHH
Q 048709 156 VVEFA 160 (203)
Q Consensus 156 ~~~~~ 160 (203)
+-+-.
T Consensus 174 Lyqtf 178 (842)
T KOG0469|consen 174 LYQTF 178 (842)
T ss_pred HHHHH
Confidence 54433
No 451
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.48 E-value=0.00011 Score=43.92 Aligned_cols=21 Identities=24% Similarity=0.561 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 048709 31 VVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 31 i~vvG~~~sGKStli~~l~~~ 51 (203)
|++.|++||||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998764
No 452
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.47 E-value=5.3e-05 Score=53.80 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~ 52 (203)
..-+++.||+|+||||+++.|....
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3568999999999999999998866
No 453
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.45 E-value=0.00082 Score=49.03 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 048709 31 VVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 31 i~vvG~~~sGKStli~~l~~~ 51 (203)
|+|+|++||||||+++.+...
T Consensus 4 ilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988764
No 454
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.44 E-value=0.0019 Score=53.24 Aligned_cols=86 Identities=13% Similarity=-0.009 Sum_probs=43.9
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Q 048709 103 GAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTA 181 (203)
Q Consensus 103 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 181 (203)
.+|+|=|.-+.-.......+.+.+..+.. ...|+|+++|-+-.............++-...++..+........-+...
T Consensus 196 ~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~ 275 (634)
T KOG1970|consen 196 KLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKF 275 (634)
T ss_pred eEEEeeccchhhhhhhHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHH
Confidence 35777777653322222222222222222 57899999987766432222222223333556666666666555555555
Q ss_pred HHHHHHH
Q 048709 182 FFRLLQE 188 (203)
Q Consensus 182 ~~~i~~~ 188 (203)
+..|+..
T Consensus 276 L~ric~~ 282 (634)
T KOG1970|consen 276 LKRICRI 282 (634)
T ss_pred HHHHHHH
Confidence 5555543
No 455
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.43 E-value=0.00036 Score=55.82 Aligned_cols=65 Identities=20% Similarity=0.041 Sum_probs=38.3
Q ss_pred EEEEEEEeCCCchhhhh-hhHh-----hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 048709 76 IIKAQIWDTAGQERYRA-VTSA-----YYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV 146 (203)
Q Consensus 76 ~~~~~l~D~~g~~~~~~-~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 146 (203)
.+.+.|+||+|...... +... -.-+.|=+++|+|+.-.+.-.+....++.-... .-+|+||.|..
T Consensus 182 ~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i------tGvIlTKlDGd 252 (451)
T COG0541 182 GYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI------TGVILTKLDGD 252 (451)
T ss_pred CCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC------ceEEEEcccCC
Confidence 35789999999543322 1111 124567799999998765444433333322211 25778898864
No 456
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.43 E-value=0.0006 Score=48.42 Aligned_cols=24 Identities=17% Similarity=0.291 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~ 51 (203)
..-++|+|.+|||||||++++...
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHH
Confidence 346899999999999999999864
No 457
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.40 E-value=0.00014 Score=54.30 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=22.8
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~ 51 (203)
+.+++++|+|++|||||+|+..|+..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 45699999999999999999988753
No 458
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.39 E-value=0.0014 Score=50.40 Aligned_cols=105 Identities=18% Similarity=0.228 Sum_probs=62.3
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh----hh--------
Q 048709 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER----YR-------- 91 (203)
Q Consensus 24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~-------- 91 (203)
......+++++|++|.|||++++++....-. ..... ...+.+.+..+|.... |.
T Consensus 57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~-~~d~~-------------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPP-QSDED-------------AERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred cccCCCceEEecCCCCcHHHHHHHHHHHCCC-CCCCC-------------CccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 3456688999999999999999999874421 11111 1123455666664211 11
Q ss_pred ------------hhhHhhhcCCcEEEEEEeCCCH---HHHHHHHHHHHHHHhhcC-CCCcEEEEEeC
Q 048709 92 ------------AVTSAYYRGALGAVVVYDITKR---QSFDHVARGVEELRAHAD-SSIRIILIGNK 142 (203)
Q Consensus 92 ------------~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK 142 (203)
......++....=++++|=-+. -+...-+..++.+..... -++|+|.++++
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 1112345666677888885431 123333455555555554 68999999875
No 459
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.39 E-value=0.0021 Score=53.64 Aligned_cols=84 Identities=14% Similarity=0.222 Sum_probs=45.6
Q ss_pred EEEEEEeCCC---HHHHHHHHHHHHHHHhhcCCCC-cEEEEEeCCCCCccc------CCCHHHH--HHHHHHcCCeEEEE
Q 048709 103 GAVVVYDITK---RQSFDHVARGVEELRAHADSSI-RIILIGNKSDLVDMW------AVSAEDV--VEFAEDQGLFFSEA 170 (203)
Q Consensus 103 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~~~------~~~~~~~--~~~~~~~~~~~~~~ 170 (203)
-+|+|=|.-+ .+. ..+...+...... ... |+|+|++=+|..... ..+.+.+ .++....++..+.+
T Consensus 134 kvILVEDlPN~~~~~~-~~f~~~L~~~l~~--~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~F 210 (519)
T PF03215_consen 134 KVILVEDLPNVFHRDT-SRFREALRQYLRS--SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKF 210 (519)
T ss_pred eEEEeeccccccchhH-HHHHHHHHHHHHc--CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEe
Confidence 4666666654 222 3334433433332 344 999999965432210 1111112 34455667778888
Q ss_pred ecCCCCCHHHHHHHHHHHH
Q 048709 171 SALNGDNVDTAFFRLLQEI 189 (203)
Q Consensus 171 sa~~~~~i~~~~~~i~~~~ 189 (203)
.+....-+...+..|+..-
T Consensus 211 NpIa~T~mkKaL~rI~~~E 229 (519)
T PF03215_consen 211 NPIAPTFMKKALKRILKKE 229 (519)
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 8777767766666666543
No 460
>PRK06217 hypothetical protein; Validated
Probab=97.37 E-value=0.00017 Score=51.95 Aligned_cols=23 Identities=13% Similarity=0.394 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~ 51 (203)
.+|+|+|.+||||||+.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998753
No 461
>PRK01889 GTPase RsgA; Reviewed
Probab=97.36 E-value=0.00024 Score=56.51 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~ 52 (203)
-+++++|.+|+|||||+|.|.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 479999999999999999998754
No 462
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=97.33 E-value=0.016 Score=44.92 Aligned_cols=115 Identities=14% Similarity=0.149 Sum_probs=58.1
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhc-CCCCc-EEEEEeCCCCCcc-----
Q 048709 76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHA-DSSIR-IILIGNKSDLVDM----- 148 (203)
Q Consensus 76 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p-~ivv~nK~D~~~~----- 148 (203)
.+.+.++||+|.-....+ ...+..+|.++++...+ +.++..+...++.+.... ..+.+ ..+++|+.+....
T Consensus 115 ~yD~IiIDt~~~l~~~a~-~aal~~AD~viIp~~p~-~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~~~~~~~~~ 192 (290)
T CHL00072 115 EYDIILFDVLGDVVCGGF-AAPLNYADYCIIITDNG-FDALFAANRIAASVREKARTHPLRLAGLVGNRTSKRDLIDKYV 192 (290)
T ss_pred cCCEEEEecCCcceechh-hhhhhcCCEEEEEecCC-HHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCchhHHHHHH
Confidence 356889999875322211 12356789998888765 445555544443333321 23333 3478899874210
Q ss_pred --------cCCCHHHHHHHHHHcCCeEEEEecCCCCC---HHHHHHHHHHHHHHhh
Q 048709 149 --------WAVSAEDVVEFAEDQGLFFSEASALNGDN---VDTAFFRLLQEIYALS 193 (203)
Q Consensus 149 --------~~~~~~~~~~~~~~~~~~~~~~sa~~~~~---i~~~~~~i~~~~~~~~ 193 (203)
..+........+...+.++++.+.. ..+ ....+..+.+.+....
T Consensus 193 ~~~~~~vl~~Ip~~~~v~~A~~~g~pv~~~~p~-s~~~~~~a~~y~~La~ell~~~ 247 (290)
T CHL00072 193 EACPMPVLEVLPLIEDIRVSRVKGKTLFEMVES-EPSLNYVCDYYLNIADQLLSQP 247 (290)
T ss_pred HHcCCceEEECCCChHHHHHHhCCCceEEeCCC-CcchhHHHHHHHHHHHHHHhCC
Confidence 0011122222233444455554432 222 3556777777665543
No 463
>PRK03839 putative kinase; Provisional
Probab=97.33 E-value=0.00019 Score=51.50 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~ 51 (203)
+|+++|.|||||||+.+.|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988653
No 464
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.004 Score=50.34 Aligned_cols=31 Identities=26% Similarity=0.430 Sum_probs=26.0
Q ss_pred CCCCCCeeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709 21 IPDKIDYVFKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 21 ~~~~~~~~~~i~vvG~~~sGKStli~~l~~~ 51 (203)
.....+..-+|+|||+.|+|||||+.-|++.
T Consensus 606 ldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 606 LDFGIDMDSRIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred ccccccccceeEEECCCCccHHHHHHHHhcC
Confidence 3445667789999999999999999988774
No 465
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.30 E-value=0.0002 Score=51.71 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~ 52 (203)
.=|+|+|++|||||||+++|....
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 458999999999999999998753
No 466
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.30 E-value=0.00021 Score=47.98 Aligned_cols=21 Identities=19% Similarity=0.359 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 048709 31 VVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 31 i~vvG~~~sGKStli~~l~~~ 51 (203)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988654
No 467
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.29 E-value=0.00022 Score=46.36 Aligned_cols=21 Identities=29% Similarity=0.605 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 048709 29 FKVVVIGDSAVGKSQILSRFT 49 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~ 49 (203)
-.++++|++|||||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 458999999999999999875
No 468
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.28 E-value=0.00026 Score=47.81 Aligned_cols=25 Identities=12% Similarity=0.290 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEF 53 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~ 53 (203)
-.++++|++|+||||+++.+...-.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4789999999999999999977543
No 469
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.28 E-value=0.00023 Score=47.94 Aligned_cols=21 Identities=14% Similarity=0.415 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 048709 31 VVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 31 i~vvG~~~sGKStli~~l~~~ 51 (203)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999998764
No 470
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.28 E-value=0.00024 Score=48.67 Aligned_cols=21 Identities=43% Similarity=0.713 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 048709 31 VVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 31 i~vvG~~~sGKStli~~l~~~ 51 (203)
|+++|++|||||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 471
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.28 E-value=0.00027 Score=51.91 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~ 51 (203)
...-|+|+|++|||||||++.|.+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999763
No 472
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.28 E-value=0.00027 Score=55.33 Aligned_cols=24 Identities=38% Similarity=0.429 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEF 53 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~ 53 (203)
-++++|++|||||||++.+.+-+-
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 378999999999999999987543
No 473
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.27 E-value=0.00026 Score=51.12 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~ 51 (203)
.|+|+|++|||||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999664
No 474
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.27 E-value=0.0033 Score=48.85 Aligned_cols=144 Identities=16% Similarity=0.165 Sum_probs=76.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcC----CCccC-------------CCCCcceeeEEEEEE-----------E-----
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKN----EFCFD-------------SKSTIGVEFQTRTVT-----------I----- 72 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~----~~~~~-------------~~~~~~~~~~~~~~~-----------~----- 72 (203)
..+.-|+++|-.|+||||-|-.|... ..... .-..++.......+. +
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 34789999999999999998876321 00000 000000000111110 1
Q ss_pred -CCEEEEEEEEeCCCchhhh-hhh------HhhhcCCc-----EEEEEEeCCCH-HHHHHHHHHHHHHHhhcCCCCcEEE
Q 048709 73 -NSKIIKAQIWDTAGQERYR-AVT------SAYYRGAL-----GAVVVYDITKR-QSFDHVARGVEELRAHADSSIRIIL 138 (203)
Q Consensus 73 -~~~~~~~~l~D~~g~~~~~-~~~------~~~~~~~d-----~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iv 138 (203)
..+++.+.|+||+|.-.-. .++ ....+..+ =++++.|++-. .++.+.+.+-+. ... --+
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~ea-v~l------~Gi 289 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEA-VGL------DGI 289 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHh-cCC------ceE
Confidence 1135788999999942111 111 11222233 37888898764 456665443222 222 368
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 048709 139 IGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF 182 (203)
Q Consensus 139 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 182 (203)
++||.|.... ---+..++...++|+..+-. |++++++.
T Consensus 290 IlTKlDgtAK----GG~il~I~~~l~~PI~fiGv--GE~~~DL~ 327 (340)
T COG0552 290 ILTKLDGTAK----GGIILSIAYELGIPIKFIGV--GEGYDDLR 327 (340)
T ss_pred EEEecccCCC----cceeeeHHHHhCCCEEEEeC--CCChhhcc
Confidence 8999996431 12345566778888777653 44555443
No 475
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.27 E-value=0.00023 Score=53.64 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
=-++++|+.|||||||++.+.+
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3478999999999999999976
No 476
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.26 E-value=0.00024 Score=50.88 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~ 51 (203)
.++|+|++||||||+++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999998664
No 477
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.26 E-value=0.00026 Score=50.27 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~ 52 (203)
.=.++|+|++|+|||||+|-+.+=.
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHhcc
Confidence 3578999999999999999886643
No 478
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.26 E-value=0.00027 Score=51.04 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~ 51 (203)
.-.++++|++|||||||++.|.+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 357999999999999999999874
No 479
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.25 E-value=0.00023 Score=51.82 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 048709 31 VVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 31 i~vvG~~~sGKStli~~l~~~ 51 (203)
|+|.|++|||||||.+.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998664
No 480
>PRK14530 adenylate kinase; Provisional
Probab=97.25 E-value=0.00026 Score=52.35 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
.+|+|+|+|||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998853
No 481
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.24 E-value=0.00026 Score=52.23 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 048709 30 KVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~ 50 (203)
-|+++|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999977
No 482
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.23 E-value=0.00026 Score=50.94 Aligned_cols=21 Identities=14% Similarity=0.339 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 048709 29 FKVVVIGDSAVGKSQILSRFT 49 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~ 49 (203)
.-|+++|++||||||+++.|.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999987
No 483
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.23 E-value=0.00029 Score=52.10 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~ 52 (203)
=.++++|+.|||||||++.|.+..
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCc
Confidence 468999999999999999998853
No 484
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.23 E-value=0.00031 Score=51.64 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=22.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~ 51 (203)
....|+|.|++|||||||.+.|...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4589999999999999999998763
No 485
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.23 E-value=0.0003 Score=50.29 Aligned_cols=23 Identities=35% Similarity=0.323 Sum_probs=20.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHh
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFT 49 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~ 49 (203)
..-.++|+|+.|||||||++.+.
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 44679999999999999999886
No 486
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.22 E-value=0.0005 Score=50.47 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~ 51 (203)
...-|+|+|++|||||||++.|...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4577889999999999999999754
No 487
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.22 E-value=0.00031 Score=48.27 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~ 51 (203)
.|+|+|+.|||||||++.|.+.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 488
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.20 E-value=0.0057 Score=47.24 Aligned_cols=21 Identities=38% Similarity=0.385 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 048709 29 FKVVVIGDSAVGKSQILSRFT 49 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~ 49 (203)
-.|+|.|.+||||||+++.|-
T Consensus 7 ~~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 7 RLVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 368999999999999999984
No 489
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.20 E-value=0.00032 Score=51.80 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~ 52 (203)
=.++++|+.|||||||++.+.+..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998853
No 490
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.20 E-value=0.00025 Score=51.58 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=18.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 048709 29 FKVVVIGDSAVGKSQILSRFT 49 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~ 49 (203)
--.+++||+|||||||++.|-
T Consensus 34 ~VTAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 34 KVTALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred ceEEEECCCCcCHHHHHHHHH
Confidence 346899999999999999874
No 491
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.20 E-value=0.00033 Score=51.55 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~ 52 (203)
=.++++|+.|+|||||++.|.+..
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998753
No 492
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.20 E-value=0.00031 Score=50.24 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~ 51 (203)
-|+|+|++|||||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999874
No 493
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.19 E-value=0.00034 Score=51.52 Aligned_cols=24 Identities=38% Similarity=0.465 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~ 52 (203)
=.++++|+.|||||||++.+.+..
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998853
No 494
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.19 E-value=0.00035 Score=50.54 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
.++++|+.|||||||++.+.+..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998753
No 495
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.19 E-value=0.00034 Score=52.39 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~ 52 (203)
=.++++|+.|||||||++.|.+..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998753
No 496
>PRK14531 adenylate kinase; Provisional
Probab=97.19 E-value=0.00033 Score=50.39 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~ 50 (203)
+.+|+++|+|||||||+...|..
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998854
No 497
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.19 E-value=0.00035 Score=51.52 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~ 52 (203)
=.++++|+.|||||||++.+.+..
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998753
No 498
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.18 E-value=0.00035 Score=51.16 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~ 52 (203)
=.++++|+.|||||||++.+.+..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998854
No 499
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.17 E-value=0.00037 Score=51.05 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~ 52 (203)
=.++++|+.|+|||||++.+.+..
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998853
No 500
>PRK14532 adenylate kinase; Provisional
Probab=97.17 E-value=0.00034 Score=50.46 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
++|+++|+|||||||+...|..
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998864
Done!