Query 048709
Match_columns 203
No_of_seqs 145 out of 1706
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 21:29:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048709.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048709hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1.3E-39 4.4E-44 239.3 19.7 166 27-192 12-177 (216)
2 2hup_A RAS-related protein RAB 100.0 3.4E-36 1.2E-40 219.3 22.7 181 14-194 15-196 (201)
3 2ew1_A RAS-related protein RAB 100.0 1.2E-35 4E-40 216.4 22.9 171 24-194 22-192 (201)
4 2a5j_A RAS-related protein RAB 100.0 1.7E-35 5.8E-40 213.8 23.5 176 19-194 12-187 (191)
5 2oil_A CATX-8, RAS-related pro 100.0 3E-35 1E-39 212.7 23.1 178 17-194 14-191 (193)
6 2fu5_C RAS-related protein RAB 100.0 4.3E-36 1.5E-40 215.2 18.5 173 25-197 5-177 (183)
7 2bme_A RAB4A, RAS-related prot 100.0 4.5E-35 1.6E-39 210.3 23.2 171 24-194 6-176 (186)
8 3tkl_A RAS-related protein RAB 100.0 8.7E-35 3E-39 210.5 24.6 171 24-194 12-182 (196)
9 1z0f_A RAB14, member RAS oncog 100.0 5.5E-35 1.9E-39 208.4 23.0 168 23-190 10-177 (179)
10 2gf9_A RAS-related protein RAB 100.0 8.8E-35 3E-39 209.6 23.5 170 23-192 17-186 (189)
11 3tw8_B RAS-related protein RAB 100.0 6.9E-35 2.4E-39 208.2 22.6 173 24-197 5-177 (181)
12 2efe_B Small GTP-binding prote 100.0 9.7E-35 3.3E-39 207.6 22.8 168 25-192 9-176 (181)
13 2bcg_Y Protein YP2, GTP-bindin 100.0 1.3E-34 4.5E-39 211.4 23.8 170 25-194 5-174 (206)
14 2il1_A RAB12; G-protein, GDP, 100.0 5.5E-35 1.9E-39 211.3 21.3 177 15-191 13-190 (192)
15 1z08_A RAS-related protein RAB 100.0 4.1E-35 1.4E-39 207.5 19.8 167 25-191 3-169 (170)
16 1zbd_A Rabphilin-3A; G protein 100.0 2E-34 6.8E-39 209.9 23.9 170 25-194 5-174 (203)
17 2o52_A RAS-related protein RAB 100.0 8.1E-35 2.8E-39 211.8 21.3 172 23-194 20-191 (200)
18 1r2q_A RAS-related protein RAB 100.0 1.6E-34 5.5E-39 204.2 22.2 164 26-189 4-167 (170)
19 1z0j_A RAB-22, RAS-related pro 100.0 3.3E-34 1.1E-38 202.7 23.3 164 26-189 4-167 (170)
20 3kkq_A RAS-related protein M-R 100.0 2.8E-34 9.6E-39 205.8 22.7 169 22-191 12-182 (183)
21 3bc1_A RAS-related protein RAB 100.0 2.7E-34 9.2E-39 207.4 22.5 174 22-195 5-189 (195)
22 1ek0_A Protein (GTP-binding pr 100.0 2.2E-34 7.4E-39 203.5 21.5 163 27-189 2-167 (170)
23 2fn4_A P23, RAS-related protei 100.0 2.7E-34 9.1E-39 205.2 22.2 172 24-196 5-177 (181)
24 2nzj_A GTP-binding protein REM 100.0 3.4E-34 1.2E-38 203.7 22.4 167 27-194 3-172 (175)
25 1g16_A RAS-related protein SEC 100.0 1.3E-34 4.5E-39 204.8 20.0 165 27-192 2-166 (170)
26 2g6b_A RAS-related protein RAB 100.0 3.9E-34 1.3E-38 204.3 22.6 168 25-192 7-175 (180)
27 2fg5_A RAB-22B, RAS-related pr 100.0 1.3E-34 4.5E-39 209.3 20.2 168 24-191 19-186 (192)
28 3cbq_A GTP-binding protein REM 100.0 1.7E-34 5.9E-39 209.3 20.8 173 21-193 16-190 (195)
29 3dz8_A RAS-related protein RAB 100.0 2E-35 6.8E-40 213.4 15.6 171 23-193 18-188 (191)
30 1z2a_A RAS-related protein RAB 100.0 2.2E-34 7.5E-39 203.3 20.1 165 26-191 3-167 (168)
31 3t5g_A GTP-binding protein RHE 100.0 2.8E-34 9.7E-39 205.4 20.6 168 26-194 4-172 (181)
32 2y8e_A RAB-protein 6, GH09086P 100.0 2.9E-34 9.8E-39 204.6 20.1 164 27-190 13-176 (179)
33 3cpj_B GTP-binding protein YPT 100.0 2.5E-34 8.6E-39 212.5 20.4 169 25-193 10-178 (223)
34 3q85_A GTP-binding protein REM 100.0 4.4E-34 1.5E-38 202.1 20.7 165 28-192 2-168 (169)
35 3oes_A GTPase rhebl1; small GT 100.0 1E-34 3.5E-39 211.3 17.6 169 25-194 21-190 (201)
36 1z06_A RAS-related protein RAB 100.0 6.8E-34 2.3E-38 205.0 21.6 166 25-190 17-187 (189)
37 2p5s_A RAS and EF-hand domain 100.0 2.5E-34 8.6E-39 208.9 19.4 167 24-190 24-196 (199)
38 1wms_A RAB-9, RAB9, RAS-relate 100.0 1.7E-33 5.9E-38 200.4 23.3 166 25-191 4-174 (177)
39 2f7s_A C25KG, RAS-related prot 100.0 2.3E-34 7.9E-39 211.7 19.2 176 19-194 16-202 (217)
40 2hxs_A RAB-26, RAS-related pro 100.0 1.9E-34 6.4E-39 205.6 18.1 168 26-193 4-175 (178)
41 2bov_A RAla, RAS-related prote 100.0 1.8E-33 6.1E-38 205.1 23.1 166 26-192 12-178 (206)
42 1x3s_A RAS-related protein RAB 100.0 2.4E-33 8.2E-38 202.7 23.0 168 25-193 12-180 (195)
43 3c5c_A RAS-like protein 12; GD 100.0 7.4E-34 2.5E-38 204.6 19.6 164 25-190 18-185 (187)
44 3q72_A GTP-binding protein RAD 100.0 1.3E-33 4.5E-38 199.1 20.5 163 28-192 2-165 (166)
45 3ihw_A Centg3; RAS, centaurin, 100.0 3E-33 1E-37 201.0 22.7 164 24-194 16-183 (184)
46 3cph_A RAS-related protein SEC 100.0 2.3E-33 7.9E-38 205.6 22.4 168 25-193 17-184 (213)
47 1u8z_A RAS-related protein RAL 100.0 2.6E-33 9E-38 197.5 21.5 164 27-191 3-167 (168)
48 1c1y_A RAS-related protein RAP 100.0 1.2E-33 4E-38 199.3 19.4 162 28-190 3-166 (167)
49 1ky3_A GTP-binding protein YPT 100.0 1E-33 3.6E-38 202.2 18.9 170 25-194 5-181 (182)
50 1kao_A RAP2A; GTP-binding prot 100.0 2.3E-33 7.9E-38 197.6 20.0 163 28-191 3-166 (167)
51 2a9k_A RAS-related protein RAL 100.0 4.8E-33 1.7E-37 199.6 22.0 167 26-193 16-183 (187)
52 3clv_A RAB5 protein, putative; 100.0 8.8E-33 3E-37 200.9 23.5 164 26-192 5-205 (208)
53 2atv_A RERG, RAS-like estrogen 100.0 3.1E-33 1.1E-37 202.7 21.0 166 26-193 26-193 (196)
54 4dsu_A GTPase KRAS, isoform 2B 100.0 9.8E-33 3.3E-37 198.4 23.3 167 26-194 2-169 (189)
55 2yc2_C IFT27, small RAB-relate 100.0 2.8E-34 9.7E-39 209.5 15.3 171 26-196 18-197 (208)
56 3q3j_B RHO-related GTP-binding 100.0 1.3E-33 4.5E-38 207.5 18.7 169 24-194 23-206 (214)
57 1vg8_A RAS-related protein RAB 100.0 4.3E-33 1.5E-37 203.3 20.2 168 25-193 5-177 (207)
58 3reg_A RHO-like small GTPase; 100.0 9.9E-33 3.4E-37 199.7 21.6 167 25-193 20-190 (194)
59 2q3h_A RAS homolog gene family 100.0 8.4E-33 2.9E-37 201.0 21.2 170 24-195 16-199 (201)
60 2atx_A Small GTP binding prote 100.0 9.7E-33 3.3E-37 199.6 21.1 166 24-191 14-193 (194)
61 2g3y_A GTP-binding protein GEM 100.0 1.4E-32 4.9E-37 201.3 22.1 168 25-193 34-205 (211)
62 2iwr_A Centaurin gamma 1; ANK 100.0 1.1E-32 3.8E-37 196.6 21.0 163 27-196 6-174 (178)
63 3con_A GTPase NRAS; structural 100.0 2.6E-32 8.7E-37 196.7 23.0 169 27-197 20-189 (190)
64 2gco_A H9, RHO-related GTP-bin 100.0 6.6E-32 2.3E-36 196.5 22.8 164 26-191 23-200 (201)
65 1mh1_A RAC1; GTP-binding, GTPa 100.0 2.5E-32 8.6E-37 195.8 20.3 164 27-192 4-181 (186)
66 2j1l_A RHO-related GTP-binding 100.0 1.8E-32 6E-37 201.4 19.9 167 26-194 32-212 (214)
67 1gwn_A RHO-related GTP-binding 100.0 1.4E-32 4.9E-37 200.7 18.5 166 24-191 24-204 (205)
68 2erx_A GTP-binding protein DI- 100.0 2.2E-32 7.5E-37 193.6 18.9 163 27-190 2-166 (172)
69 1m7b_A RND3/RHOE small GTP-bin 100.0 1.6E-32 5.6E-37 197.0 18.4 164 26-191 5-183 (184)
70 2ce2_X GTPase HRAS; signaling 100.0 1.1E-31 3.8E-36 188.6 22.3 161 28-190 3-164 (166)
71 2j0v_A RAC-like GTP-binding pr 100.0 8E-33 2.7E-37 202.8 17.0 169 26-196 7-185 (212)
72 4djt_A GTP-binding nuclear pro 100.0 8E-33 2.7E-37 203.6 16.1 170 25-194 8-178 (218)
73 3l0i_B RAS-related protein RAB 100.0 4.2E-35 1.4E-39 213.1 3.0 169 23-191 28-196 (199)
74 2fv8_A H6, RHO-related GTP-bin 100.0 1.7E-31 5.9E-36 195.1 21.0 165 26-192 23-201 (207)
75 2gf0_A GTP-binding protein DI- 100.0 8.2E-32 2.8E-36 195.3 19.1 165 26-192 6-172 (199)
76 3t1o_A Gliding protein MGLA; G 100.0 1.4E-32 4.8E-37 198.9 15.1 168 24-194 10-195 (198)
77 2cjw_A GTP-binding protein GEM 100.0 3E-31 1E-35 191.8 21.6 167 26-193 4-174 (192)
78 4gzl_A RAS-related C3 botulinu 100.0 5.2E-32 1.8E-36 197.5 17.2 162 26-189 28-203 (204)
79 3gj0_A GTP-binding nuclear pro 100.0 1.3E-32 4.6E-37 202.9 13.5 170 22-194 9-178 (221)
80 2f9l_A RAB11B, member RAS onco 100.0 1.3E-30 4.5E-35 189.3 23.2 168 26-193 3-170 (199)
81 3bwd_D RAC-like GTP-binding pr 100.0 1.4E-32 4.7E-37 196.6 11.7 162 27-190 7-180 (182)
82 4bas_A ADP-ribosylation factor 100.0 5.9E-31 2E-35 190.7 19.6 168 22-195 11-193 (199)
83 2h57_A ADP-ribosylation factor 100.0 7.2E-31 2.5E-35 189.2 18.4 162 25-192 18-188 (190)
84 1ksh_A ARF-like protein 2; sma 100.0 2.9E-30 1E-34 185.3 20.0 159 26-191 16-180 (186)
85 1oix_A RAS-related protein RAB 100.0 1E-29 3.5E-34 183.6 21.7 165 25-189 26-190 (191)
86 2h17_A ADP-ribosylation factor 100.0 4.7E-31 1.6E-35 188.9 14.5 162 20-188 13-180 (181)
87 1zd9_A ADP-ribosylation factor 100.0 7.4E-31 2.5E-35 189.0 15.6 161 25-191 19-185 (188)
88 1m2o_B GTP-binding protein SAR 100.0 2.1E-30 7.1E-35 187.0 17.4 155 27-188 22-189 (190)
89 1zj6_A ADP-ribosylation factor 100.0 1.4E-30 5E-35 187.2 16.4 161 26-193 14-180 (187)
90 1f6b_A SAR1; gtpases, N-termin 100.0 9.9E-31 3.4E-35 189.9 15.7 155 27-188 24-196 (198)
91 1fzq_A ADP-ribosylation factor 100.0 1.4E-30 4.8E-35 186.5 16.1 159 26-191 14-178 (181)
92 1upt_A ARL1, ADP-ribosylation 100.0 6.6E-31 2.2E-35 186.0 14.0 158 27-191 6-169 (171)
93 1r8s_A ADP-ribosylation factor 100.0 3.9E-30 1.3E-34 180.9 17.5 155 29-190 1-161 (164)
94 1moz_A ARL1, ADP-ribosylation 100.0 6.7E-30 2.3E-34 182.8 15.6 160 26-192 16-181 (183)
95 2b6h_A ADP-ribosylation factor 100.0 1.2E-29 4E-34 183.4 16.4 158 26-190 27-190 (192)
96 2zej_A Dardarin, leucine-rich 100.0 1.1E-30 3.8E-35 187.5 10.5 166 28-194 2-181 (184)
97 2wkq_A NPH1-1, RAS-related C3 100.0 4.6E-29 1.6E-33 194.2 20.2 164 26-191 153-330 (332)
98 3th5_A RAS-related C3 botulinu 99.9 2.1E-32 7.3E-37 199.4 0.0 162 26-189 28-203 (204)
99 2x77_A ADP-ribosylation factor 100.0 2.4E-30 8.1E-35 186.3 10.6 160 26-192 20-185 (189)
100 3llu_A RAS-related GTP-binding 100.0 4.6E-30 1.6E-34 186.0 10.4 162 23-189 15-195 (196)
101 2qu8_A Putative nucleolar GTP- 100.0 3.5E-28 1.2E-32 180.1 18.3 171 20-193 21-207 (228)
102 2wji_A Ferrous iron transport 100.0 2.2E-28 7.5E-33 172.5 14.6 153 28-189 3-163 (165)
103 2fh5_B SR-beta, signal recogni 100.0 8.5E-28 2.9E-32 176.2 17.2 158 26-188 5-213 (214)
104 3c5h_A Glucocorticoid receptor 100.0 1.3E-29 4.4E-34 190.8 6.7 167 22-190 13-254 (255)
105 2lkc_A Translation initiation 100.0 5.5E-28 1.9E-32 172.0 14.4 157 26-194 6-174 (178)
106 3r7w_A Gtpase1, GTP-binding pr 100.0 4.9E-28 1.7E-32 186.7 14.7 160 27-190 2-180 (307)
107 1svi_A GTP-binding protein YSX 100.0 8.8E-28 3E-32 173.5 13.3 159 24-189 19-193 (195)
108 3o47_A ADP-ribosylation factor 100.0 2.8E-27 9.7E-32 184.0 16.8 158 27-191 164-327 (329)
109 2cxx_A Probable GTP-binding pr 100.0 1E-27 3.5E-32 172.4 12.6 159 29-196 2-189 (190)
110 3lvq_E ARF-GAP with SH3 domain 99.9 4.8E-27 1.6E-31 192.3 16.1 162 26-194 320-487 (497)
111 2wjg_A FEOB, ferrous iron tran 99.9 4.3E-27 1.5E-31 168.9 13.8 158 27-193 6-171 (188)
112 2dyk_A GTP-binding protein; GT 99.9 1.2E-26 4.2E-31 162.4 13.2 150 29-189 2-160 (161)
113 2gj8_A MNME, tRNA modification 99.9 2.2E-27 7.7E-32 168.5 9.5 154 27-190 3-165 (172)
114 3a1s_A Iron(II) transport prot 99.9 1.8E-26 6.3E-31 173.7 14.4 155 27-190 4-166 (258)
115 3iev_A GTP-binding protein ERA 99.9 2.2E-26 7.4E-31 177.6 15.0 165 23-191 5-182 (308)
116 3pqc_A Probable GTP-binding pr 99.9 4.9E-26 1.7E-30 164.1 15.1 158 23-190 18-193 (195)
117 3iby_A Ferrous iron transport 99.9 7.6E-27 2.6E-31 175.6 10.5 151 29-188 2-164 (256)
118 3b1v_A Ferrous iron uptake tra 99.9 1.4E-26 4.7E-31 175.4 11.4 153 27-189 2-162 (272)
119 3r7w_B Gtpase2, GTP-binding pr 99.9 1.9E-27 6.5E-32 182.5 6.3 155 30-191 1-174 (331)
120 3dpu_A RAB family protein; roc 99.9 5.6E-27 1.9E-31 193.3 7.8 164 25-192 38-209 (535)
121 2hjg_A GTP-binding protein ENG 99.9 2.7E-26 9.3E-31 184.9 11.3 183 4-192 146-350 (436)
122 4dhe_A Probable GTP-binding pr 99.9 5.6E-26 1.9E-30 167.4 11.3 167 23-193 24-213 (223)
123 3k53_A Ferrous iron transport 99.9 2.5E-25 8.4E-30 168.9 13.5 157 28-192 3-167 (271)
124 4dcu_A GTP-binding protein ENG 99.9 1.2E-25 4E-30 182.1 12.3 184 4-193 166-371 (456)
125 3i8s_A Ferrous iron transport 99.9 4.3E-26 1.5E-30 173.2 9.2 154 28-190 3-168 (274)
126 1nrj_B SR-beta, signal recogni 99.9 4.4E-26 1.5E-30 167.5 5.5 144 25-177 9-170 (218)
127 2e87_A Hypothetical protein PH 99.9 6.9E-24 2.4E-28 166.8 17.9 163 26-193 165-338 (357)
128 3qq5_A Small GTP-binding prote 99.9 1.2E-25 4E-30 179.4 6.6 162 22-192 28-197 (423)
129 1cip_A Protein (guanine nucleo 99.9 3.8E-24 1.3E-28 167.2 13.8 124 68-193 186-346 (353)
130 3gee_A MNME, tRNA modification 99.9 4.6E-24 1.6E-28 172.7 13.7 157 27-190 232-397 (476)
131 1wf3_A GTP-binding protein; GT 99.9 1E-23 3.5E-28 161.9 14.2 155 27-190 6-172 (301)
132 1lnz_A SPO0B-associated GTP-bi 99.9 3E-24 1E-28 167.1 9.6 160 30-194 160-333 (342)
133 1xzp_A Probable tRNA modificat 99.9 1.1E-23 3.7E-28 170.7 12.8 153 28-191 243-405 (482)
134 3lxx_A GTPase IMAP family memb 99.9 8.3E-23 2.8E-27 152.2 15.3 165 23-191 24-214 (239)
135 3ohm_A Guanine nucleotide-bind 99.9 5.2E-23 1.8E-27 158.7 12.7 127 66-194 158-321 (327)
136 1mky_A Probable GTP-binding pr 99.9 1.2E-22 4E-27 163.8 15.3 152 29-192 2-167 (439)
137 1zcb_A G alpha I/13; GTP-bindi 99.9 7.7E-23 2.6E-27 160.3 13.3 123 69-193 195-355 (362)
138 2qtf_A Protein HFLX, GTP-bindi 99.9 3.9E-22 1.3E-26 156.7 17.1 162 28-192 178-355 (364)
139 2xtz_A Guanine nucleotide-bind 99.9 6.9E-23 2.4E-27 160.0 12.5 119 75-193 181-347 (354)
140 1mky_A Probable GTP-binding pr 99.9 8.9E-23 3E-27 164.5 13.5 161 26-192 178-356 (439)
141 3sjy_A Translation initiation 99.9 5.9E-22 2E-26 158.1 17.5 164 25-191 5-192 (403)
142 1s0u_A EIF-2-gamma, translatio 99.9 8.8E-22 3E-26 157.3 18.2 160 26-191 6-198 (408)
143 3t5d_A Septin-7; GTP-binding p 99.9 2E-23 6.8E-28 158.6 8.1 160 26-189 6-202 (274)
144 1wb1_A Translation elongation 99.9 5.1E-22 1.7E-26 161.5 16.2 156 27-191 18-189 (482)
145 3geh_A MNME, tRNA modification 99.9 4.4E-23 1.5E-27 166.4 8.8 154 27-192 223-385 (462)
146 3lxw_A GTPase IMAP family memb 99.9 2.3E-22 8E-27 150.5 12.0 166 25-192 18-209 (247)
147 2xtp_A GTPase IMAP family memb 99.9 3.9E-22 1.3E-26 150.3 12.4 164 25-192 19-209 (260)
148 3cb4_D GTP-binding protein LEP 99.9 7E-22 2.4E-26 163.6 14.9 160 27-192 3-183 (599)
149 1ega_A Protein (GTP-binding pr 99.9 1.6E-22 5.6E-27 155.4 10.1 157 27-190 7-174 (301)
150 2hjg_A GTP-binding protein ENG 99.9 2.9E-23 9.8E-28 167.3 6.1 153 29-191 4-165 (436)
151 1kk1_A EIF2gamma; initiation o 99.9 1E-21 3.6E-26 157.0 14.8 161 25-191 7-200 (410)
152 2ywe_A GTP-binding protein LEP 99.9 1.5E-21 5.1E-26 161.4 15.8 161 26-192 4-185 (600)
153 3j2k_7 ERF3, eukaryotic polype 99.9 1.5E-21 5.2E-26 157.1 14.9 153 26-183 15-217 (439)
154 1azs_C GS-alpha; complex (lyas 99.9 1E-21 3.6E-26 155.1 13.3 118 77-194 217-388 (402)
155 4fid_A G protein alpha subunit 99.9 2.7E-22 9.4E-27 155.2 9.5 116 76-191 160-328 (340)
156 2ged_A SR-beta, signal recogni 99.9 4.1E-22 1.4E-26 143.5 9.9 115 25-148 45-171 (193)
157 2qag_A Septin-2, protein NEDD5 99.9 8.2E-23 2.8E-27 160.6 5.5 161 26-192 35-234 (361)
158 3p26_A Elongation factor 1 alp 99.9 6.3E-22 2.2E-26 161.3 10.0 152 27-180 32-227 (483)
159 3izy_P Translation initiation 99.9 1.1E-23 3.7E-28 172.1 -1.9 159 27-190 3-167 (537)
160 1g7s_A Translation initiation 99.9 6.9E-21 2.4E-25 157.8 14.3 160 27-193 4-220 (594)
161 3tr5_A RF-3, peptide chain rel 99.9 3.9E-21 1.3E-25 157.4 12.4 116 26-147 11-148 (528)
162 4dcu_A GTP-binding protein ENG 99.9 6.3E-22 2.2E-26 160.3 7.4 155 28-191 23-185 (456)
163 2elf_A Protein translation elo 99.8 3E-21 1E-25 152.0 9.6 147 30-192 23-181 (370)
164 1zun_B Sulfate adenylate trans 99.8 1.4E-20 4.6E-25 151.6 12.8 153 26-181 22-214 (434)
165 2c78_A Elongation factor TU-A; 99.8 1.4E-21 4.7E-26 156.1 6.9 160 27-190 10-211 (405)
166 1d2e_A Elongation factor TU (E 99.8 4.7E-21 1.6E-25 152.6 9.7 160 28-191 3-195 (397)
167 2aka_B Dynamin-1; fusion prote 99.8 1.9E-21 6.6E-26 149.2 5.7 162 25-189 23-251 (299)
168 3izq_1 HBS1P, elongation facto 99.8 4.3E-21 1.5E-25 159.8 7.9 154 26-181 165-362 (611)
169 1jny_A EF-1-alpha, elongation 99.8 3.2E-21 1.1E-25 155.2 6.8 150 27-182 5-204 (435)
170 1r5b_A Eukaryotic peptide chai 99.8 3.4E-21 1.2E-25 156.2 6.4 155 26-182 41-243 (467)
171 1pui_A ENGB, probable GTP-bind 99.8 4.9E-20 1.7E-24 134.3 11.8 157 25-190 23-198 (210)
172 3def_A T7I23.11 protein; chlor 99.8 3E-19 1E-23 134.7 14.0 127 26-155 34-173 (262)
173 1udx_A The GTP-binding protein 99.8 2.4E-19 8.2E-24 142.7 14.0 161 30-194 159-328 (416)
174 1zo1_I IF2, translation initia 99.8 4.9E-22 1.7E-26 161.2 -1.5 152 27-187 3-163 (501)
175 3avx_A Elongation factor TS, e 99.8 4.4E-20 1.5E-24 160.0 9.0 161 26-190 294-485 (1289)
176 1f60_A Elongation factor EEF1A 99.8 1.9E-20 6.4E-25 151.5 6.1 150 27-181 6-202 (458)
177 2j69_A Bacterial dynamin-like 99.8 7.5E-19 2.5E-23 148.5 14.6 163 26-191 67-325 (695)
178 3t34_A Dynamin-related protein 99.8 7.5E-20 2.6E-24 144.0 6.9 157 27-185 33-255 (360)
179 1h65_A Chloroplast outer envel 99.8 5.1E-19 1.7E-23 134.0 10.5 125 26-153 37-174 (270)
180 1jwy_B Dynamin A GTPase domain 99.8 7E-19 2.4E-23 136.0 11.3 163 26-191 22-262 (315)
181 3mca_A HBS1, elongation factor 99.8 4.8E-21 1.7E-25 159.0 -0.9 149 26-179 175-371 (592)
182 2dy1_A Elongation factor G; tr 99.8 1.2E-18 4E-23 146.7 13.3 115 26-146 7-139 (665)
183 1dar_A EF-G, elongation factor 99.8 5.9E-18 2E-22 142.9 15.4 117 25-147 9-143 (691)
184 2h5e_A Peptide chain release f 99.8 2.4E-18 8.2E-23 141.1 12.3 116 26-147 11-148 (529)
185 2qnr_A Septin-2, protein NEDD5 99.8 1.7E-19 5.9E-24 138.5 4.7 162 26-192 16-215 (301)
186 1wxq_A GTP-binding protein; st 99.8 7.1E-19 2.4E-23 139.6 6.3 85 29-113 1-114 (397)
187 2qag_C Septin-7; cell cycle, c 99.8 1.2E-18 4.1E-23 138.7 7.1 159 26-189 29-225 (418)
188 2rdo_7 EF-G, elongation factor 99.7 8.3E-17 2.8E-21 136.1 17.8 118 26-147 8-148 (704)
189 2xex_A Elongation factor G; GT 99.7 7.5E-17 2.6E-21 136.3 16.5 116 26-147 8-141 (693)
190 1u0l_A Probable GTPase ENGC; p 99.7 1.2E-18 4E-23 133.9 4.3 134 43-187 32-169 (301)
191 2x2e_A Dynamin-1; nitration, h 99.7 1.6E-18 5.4E-23 136.1 2.3 159 26-187 29-254 (353)
192 1jal_A YCHF protein; nucleotid 99.7 3.7E-16 1.3E-20 121.9 14.3 146 28-173 2-239 (363)
193 2wsm_A Hydrogenase expression/ 99.7 2.2E-17 7.4E-22 121.3 6.5 155 27-193 29-216 (221)
194 3p32_A Probable GTPase RV1496/ 99.7 1.7E-17 5.7E-22 130.3 6.2 104 77-191 172-284 (355)
195 3vqt_A RF-3, peptide chain rel 99.7 4.7E-16 1.6E-20 128.1 12.8 117 25-147 28-166 (548)
196 2hf9_A Probable hydrogenase ni 99.7 1.8E-18 6.2E-23 127.5 -3.7 154 27-191 37-224 (226)
197 4a9a_A Ribosome-interacting GT 99.6 1.2E-14 4E-19 114.1 16.1 153 27-182 71-239 (376)
198 2www_A Methylmalonic aciduria 99.6 1.4E-16 4.6E-21 124.7 5.1 103 77-191 167-279 (349)
199 2qpt_A EH domain-containing pr 99.6 3.4E-16 1.1E-20 129.1 7.6 117 25-147 62-232 (550)
200 2dby_A GTP-binding protein; GD 99.6 4.9E-15 1.7E-19 116.2 13.3 152 29-180 2-251 (368)
201 1yrb_A ATP(GTP)binding protein 99.6 3E-15 1E-19 112.6 10.3 110 77-191 109-257 (262)
202 1n0u_A EF-2, elongation factor 99.6 1.5E-15 5.2E-20 130.7 9.6 118 26-147 17-164 (842)
203 2p67_A LAO/AO transport system 99.6 7.3E-16 2.5E-20 120.3 4.1 104 77-191 149-261 (341)
204 3zvr_A Dynamin-1; hydrolase, D 99.6 3.1E-15 1E-19 126.3 7.7 157 26-188 49-275 (772)
205 2qm8_A GTPase/ATPase; G protei 99.5 1.3E-14 4.3E-19 113.0 6.2 103 77-190 148-260 (337)
206 4fn5_A EF-G 1, elongation fact 99.5 5.3E-13 1.8E-17 113.3 15.8 118 25-146 10-150 (709)
207 3j25_A Tetracycline resistance 99.5 8.3E-15 2.8E-19 122.8 4.4 115 29-147 3-133 (638)
208 2yv5_A YJEQ protein; hydrolase 99.4 1.4E-13 4.9E-18 105.6 7.4 97 87-186 66-164 (302)
209 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 3.6E-12 1.2E-16 100.6 15.0 87 26-112 18-127 (392)
210 2ohf_A Protein OLA1, GTP-bindi 99.4 1.1E-13 3.9E-18 109.0 6.3 88 26-113 20-129 (396)
211 3l82_B F-box only protein 4; T 99.4 1.6E-13 5.5E-18 98.2 5.7 103 85-190 110-222 (227)
212 3l2o_B F-box only protein 4; s 99.3 7.9E-12 2.7E-16 93.7 8.0 104 84-190 194-307 (312)
213 2j37_W Signal recognition part 99.1 2.9E-11 1E-15 98.3 2.9 152 26-188 99-310 (504)
214 2qag_B Septin-6, protein NEDD5 99.1 3.3E-10 1.1E-14 90.1 8.2 140 28-172 42-217 (427)
215 3h2y_A GTPase family protein; 99.0 1.1E-09 3.8E-14 86.1 10.1 97 86-189 55-158 (368)
216 3ec1_A YQEH GTPase; atnos1, at 99.0 2.2E-11 7.6E-16 95.9 -0.8 137 29-175 163-315 (369)
217 3sop_A Neuronal-specific septi 99.0 6.1E-10 2.1E-14 84.0 5.3 137 28-169 2-178 (270)
218 3h2y_A GTPase family protein; 99.0 3.7E-11 1.3E-15 94.5 -1.5 134 29-171 161-310 (368)
219 1tq4_A IIGP1, interferon-induc 99.0 1.2E-08 4.1E-13 81.1 12.8 157 28-192 69-254 (413)
220 3ec1_A YQEH GTPase; atnos1, at 98.9 3.5E-09 1.2E-13 83.3 7.6 97 86-189 57-160 (369)
221 3cnl_A YLQF, putative uncharac 98.8 1.1E-09 3.7E-14 82.3 2.1 57 29-89 100-156 (262)
222 1puj_A YLQF, conserved hypothe 98.8 8.2E-09 2.8E-13 78.3 6.8 101 81-191 3-106 (282)
223 1puj_A YLQF, conserved hypothe 98.8 5.6E-09 1.9E-13 79.2 5.0 59 26-88 118-176 (282)
224 3dm5_A SRP54, signal recogniti 98.7 5.1E-08 1.7E-12 78.0 8.0 86 77-172 183-274 (443)
225 2v3c_C SRP54, signal recogniti 98.5 5.8E-07 2E-11 72.0 9.1 83 77-170 181-271 (432)
226 1f5n_A Interferon-induced guan 98.5 1.9E-07 6.7E-12 77.3 5.7 64 25-88 35-102 (592)
227 3kl4_A SRP54, signal recogniti 98.4 5.3E-07 1.8E-11 72.0 7.2 90 77-178 180-277 (433)
228 1j8m_F SRP54, signal recogniti 98.4 7.5E-07 2.6E-11 67.9 7.3 91 77-180 181-280 (297)
229 3cnl_A YLQF, putative uncharac 98.3 2E-07 6.7E-12 69.9 2.6 84 93-187 14-97 (262)
230 3szr_A Interferon-induced GTP- 98.3 1.8E-06 6.2E-11 72.2 7.8 23 30-52 47-69 (608)
231 1t9h_A YLOQ, probable GTPase E 98.2 4.8E-07 1.6E-11 69.2 1.6 88 93-183 79-169 (307)
232 3e70_C DPA, signal recognition 98.1 3E-06 1E-10 65.5 5.3 91 78-180 213-309 (328)
233 1bif_A 6-phosphofructo-2-kinas 98.1 3E-07 1E-11 74.6 -1.3 101 26-128 37-147 (469)
234 2rcn_A Probable GTPase ENGC; Y 98.0 1.7E-05 5.7E-10 61.9 7.7 84 97-184 127-212 (358)
235 3q5d_A Atlastin-1; G protein, 97.9 1.1E-05 3.7E-10 64.8 5.1 26 26-51 65-90 (447)
236 2xxa_A Signal recognition part 97.8 5.6E-05 1.9E-09 60.5 7.9 83 77-170 184-273 (433)
237 1ye8_A Protein THEP1, hypothet 97.8 1.5E-05 5.2E-10 56.1 3.2 23 29-51 1-23 (178)
238 1vma_A Cell division protein F 97.7 0.00013 4.3E-09 55.9 8.2 85 77-172 187-284 (306)
239 1kgd_A CASK, peripheral plasma 97.6 3.2E-05 1.1E-09 54.4 2.9 23 29-51 6-28 (180)
240 1lvg_A Guanylate kinase, GMP k 97.6 3.6E-05 1.2E-09 55.0 2.9 22 29-50 5-26 (198)
241 3cwq_A Para family chromosome 97.6 0.00091 3.1E-08 48.1 10.2 85 77-168 68-153 (209)
242 2ffh_A Protein (FFH); SRP54, s 97.5 0.00041 1.4E-08 55.4 9.0 85 77-171 181-271 (425)
243 3tr0_A Guanylate kinase, GMP k 97.5 5E-05 1.7E-09 54.3 2.9 22 30-51 9-30 (205)
244 1t9h_A YLOQ, probable GTPase E 97.5 2.5E-05 8.7E-10 59.6 1.3 24 29-52 174-197 (307)
245 1zp6_A Hypothetical protein AT 97.5 5.6E-05 1.9E-09 53.4 3.0 23 29-51 10-32 (191)
246 3a00_A Guanylate kinase, GMP k 97.5 5.4E-05 1.8E-09 53.5 2.8 21 31-51 4-24 (186)
247 4gp7_A Metallophosphoesterase; 97.5 5.3E-05 1.8E-09 52.8 2.7 21 29-49 10-30 (171)
248 1znw_A Guanylate kinase, GMP k 97.5 5.5E-05 1.9E-09 54.4 2.9 23 29-51 21-43 (207)
249 4eun_A Thermoresistant glucoki 97.5 6.5E-05 2.2E-09 53.7 3.2 23 28-50 29-51 (200)
250 2yv5_A YJEQ protein; hydrolase 97.5 0.0002 7E-09 54.6 6.1 21 29-49 166-186 (302)
251 1s96_A Guanylate kinase, GMP k 97.4 6.7E-05 2.3E-09 54.6 2.9 23 29-51 17-39 (219)
252 1z6g_A Guanylate kinase; struc 97.4 6.6E-05 2.2E-09 54.5 2.9 23 29-51 24-46 (218)
253 3c8u_A Fructokinase; YP_612366 97.4 7.6E-05 2.6E-09 53.7 3.1 26 26-51 20-45 (208)
254 3tlx_A Adenylate kinase 2; str 97.4 1.7E-05 5.8E-10 58.7 -0.4 24 27-50 28-51 (243)
255 3tif_A Uncharacterized ABC tra 97.4 7.7E-05 2.6E-09 54.8 3.0 23 30-52 33-55 (235)
256 3ney_A 55 kDa erythrocyte memb 97.4 9.4E-05 3.2E-09 52.8 2.9 23 29-51 20-42 (197)
257 1htw_A HI0065; nucleotide-bind 97.4 9.9E-05 3.4E-09 50.8 2.9 24 29-52 34-57 (158)
258 2pcj_A ABC transporter, lipopr 97.4 9.4E-05 3.2E-09 54.0 2.9 23 30-52 32-54 (224)
259 3tau_A Guanylate kinase, GMP k 97.3 0.00011 3.6E-09 53.0 3.0 23 29-51 9-31 (208)
260 2onk_A Molybdate/tungstate ABC 97.3 0.00012 4E-09 54.1 3.1 23 30-52 26-48 (240)
261 1kag_A SKI, shikimate kinase I 97.3 0.00012 4.1E-09 50.8 2.9 22 29-50 5-26 (173)
262 3asz_A Uridine kinase; cytidin 97.3 0.00013 4.4E-09 52.4 3.2 24 27-50 5-28 (211)
263 1ly1_A Polynucleotide kinase; 97.3 0.00015 5.3E-09 50.5 3.5 22 29-50 3-24 (181)
264 3lw7_A Adenylate kinase relate 97.3 0.00014 4.7E-09 50.3 3.2 20 29-48 2-21 (179)
265 1sgw_A Putative ABC transporte 97.3 0.00012 4.3E-09 52.9 3.0 23 30-52 37-59 (214)
266 3gfo_A Cobalt import ATP-bindi 97.3 0.00012 4.2E-09 55.1 3.0 23 30-52 36-58 (275)
267 2j41_A Guanylate kinase; GMP, 97.3 0.00012 4.1E-09 52.3 2.9 24 29-52 7-30 (207)
268 1b0u_A Histidine permease; ABC 97.3 0.00012 4.2E-09 54.7 3.0 23 30-52 34-56 (262)
269 1knq_A Gluconate kinase; ALFA/ 97.3 0.00017 5.7E-09 50.2 3.6 22 29-50 9-30 (175)
270 2cbz_A Multidrug resistance-as 97.3 0.00014 4.7E-09 53.6 3.2 23 30-52 33-55 (237)
271 2rcn_A Probable GTPase ENGC; Y 97.3 0.00015 5.2E-09 56.5 3.4 24 30-53 217-240 (358)
272 4g1u_C Hemin import ATP-bindin 97.3 0.00014 4.7E-09 54.5 3.0 23 30-52 39-61 (266)
273 1g6h_A High-affinity branched- 97.3 0.00013 4.6E-09 54.3 3.0 23 30-52 35-57 (257)
274 1mv5_A LMRA, multidrug resista 97.3 0.00015 5.3E-09 53.5 3.3 24 29-52 29-52 (243)
275 1ex7_A Guanylate kinase; subst 97.3 0.00015 5.2E-09 51.2 3.1 21 31-51 4-24 (186)
276 2bdt_A BH3686; alpha-beta prot 97.3 0.00014 4.7E-09 51.3 2.9 21 30-50 4-24 (189)
277 2ff7_A Alpha-hemolysin translo 97.3 0.00016 5.3E-09 53.6 3.2 23 30-52 37-59 (247)
278 2bbw_A Adenylate kinase 4, AK4 97.3 0.00017 5.8E-09 53.2 3.4 22 28-49 27-48 (246)
279 3fb4_A Adenylate kinase; psych 97.3 0.00016 5.4E-09 52.1 3.2 22 29-50 1-22 (216)
280 2pze_A Cystic fibrosis transme 97.3 0.00017 5.7E-09 52.8 3.3 23 30-52 36-58 (229)
281 2olj_A Amino acid ABC transpor 97.3 0.00015 5.2E-09 54.2 3.0 23 30-52 52-74 (263)
282 2qor_A Guanylate kinase; phosp 97.3 0.00016 5.5E-09 51.8 3.1 23 28-50 12-34 (204)
283 2v9p_A Replication protein E1; 97.3 0.00015 5.2E-09 55.3 3.1 22 29-50 127-148 (305)
284 1ji0_A ABC transporter; ATP bi 97.2 0.00015 5.2E-09 53.4 3.0 23 30-52 34-56 (240)
285 2eyu_A Twitching motility prot 97.2 0.00015 5E-09 54.2 2.9 22 29-50 26-47 (261)
286 1vpl_A ABC transporter, ATP-bi 97.2 0.00016 5.5E-09 53.8 3.0 23 30-52 43-65 (256)
287 2i3b_A HCR-ntpase, human cance 97.2 0.00015 5.1E-09 51.5 2.7 22 30-51 3-24 (189)
288 3dl0_A Adenylate kinase; phosp 97.2 0.00017 6E-09 52.0 3.2 22 29-50 1-22 (216)
289 2qi9_C Vitamin B12 import ATP- 97.2 0.00017 5.7E-09 53.5 3.0 23 30-52 28-50 (249)
290 2d2e_A SUFC protein; ABC-ATPas 97.2 0.00017 5.9E-09 53.5 3.1 22 30-51 31-52 (250)
291 2ghi_A Transport protein; mult 97.2 0.00019 6.4E-09 53.6 3.2 22 30-51 48-69 (260)
292 3b85_A Phosphate starvation-in 97.2 0.00015 5E-09 52.3 2.5 22 30-51 24-45 (208)
293 3kb2_A SPBC2 prophage-derived 97.2 0.0002 6.7E-09 49.5 3.1 21 30-50 3-23 (173)
294 2zu0_C Probable ATP-dependent 97.2 0.00019 6.4E-09 53.8 3.1 22 30-51 48-69 (267)
295 2ihy_A ABC transporter, ATP-bi 97.2 0.0002 6.9E-09 54.0 3.3 23 30-52 49-71 (279)
296 3lnc_A Guanylate kinase, GMP k 97.2 0.00011 3.8E-09 53.6 1.8 23 29-51 28-51 (231)
297 2if2_A Dephospho-COA kinase; a 97.2 0.00019 6.6E-09 51.2 3.0 22 29-50 2-23 (204)
298 2ixe_A Antigen peptide transpo 97.2 0.0002 6.9E-09 53.8 3.2 23 30-52 47-69 (271)
299 1cke_A CK, MSSA, protein (cyti 97.2 0.0002 6.9E-09 51.9 3.1 22 29-50 6-27 (227)
300 2nq2_C Hypothetical ABC transp 97.2 0.0002 6.7E-09 53.3 3.0 23 30-52 33-55 (253)
301 2yz2_A Putative ABC transporte 97.2 0.0002 7E-09 53.6 3.0 23 30-52 35-57 (266)
302 1jjv_A Dephospho-COA kinase; P 97.2 0.00028 9.4E-09 50.5 3.5 22 29-50 3-24 (206)
303 2wwf_A Thymidilate kinase, put 97.2 0.00031 1.1E-08 50.3 3.8 23 28-50 10-32 (212)
304 3cm0_A Adenylate kinase; ATP-b 97.2 0.0003 1E-08 49.3 3.6 23 28-50 4-26 (186)
305 2qt1_A Nicotinamide riboside k 97.2 0.00033 1.1E-08 50.1 3.8 25 27-51 20-44 (207)
306 3ec2_A DNA replication protein 97.1 0.00018 6.2E-09 50.3 2.4 24 28-51 38-61 (180)
307 2cdn_A Adenylate kinase; phosp 97.1 0.00029 9.9E-09 50.2 3.5 24 27-50 19-42 (201)
308 2pjz_A Hypothetical protein ST 97.1 0.00026 8.8E-09 52.9 3.3 23 30-52 32-54 (263)
309 2jaq_A Deoxyguanosine kinase; 97.1 0.00026 9E-09 50.3 3.2 21 30-50 2-22 (205)
310 1u0l_A Probable GTPase ENGC; p 97.1 0.00027 9.2E-09 53.9 3.4 25 29-53 170-194 (301)
311 3t61_A Gluconokinase; PSI-biol 97.1 0.00023 8E-09 50.7 2.9 22 29-50 19-40 (202)
312 3aez_A Pantothenate kinase; tr 97.1 0.00032 1.1E-08 53.8 3.7 26 26-51 88-113 (312)
313 2rhm_A Putative kinase; P-loop 97.1 0.0003 1E-08 49.6 3.3 23 28-50 5-27 (193)
314 3sr0_A Adenylate kinase; phosp 97.1 0.00029 1E-08 50.7 3.3 22 29-50 1-22 (206)
315 1np6_A Molybdopterin-guanine d 97.1 0.00027 9.2E-09 49.4 2.9 23 29-51 7-29 (174)
316 4a74_A DNA repair and recombin 97.1 0.00024 8.1E-09 51.6 2.8 23 29-51 26-48 (231)
317 1qhx_A CPT, protein (chloramph 97.1 0.00027 9.3E-09 49.2 3.0 22 29-50 4-25 (178)
318 3vaa_A Shikimate kinase, SK; s 97.1 0.00029 1E-08 50.2 3.2 22 29-50 26-47 (199)
319 3nh6_A ATP-binding cassette SU 97.1 0.0002 6.8E-09 54.7 2.3 23 29-51 81-103 (306)
320 2ehv_A Hypothetical protein PH 97.1 0.00028 9.7E-09 51.8 3.1 22 28-49 30-51 (251)
321 1nks_A Adenylate kinase; therm 97.1 0.00032 1.1E-08 49.3 3.3 21 30-50 3-23 (194)
322 1kht_A Adenylate kinase; phosp 97.1 0.00032 1.1E-08 49.3 3.2 22 29-50 4-25 (192)
323 2f1r_A Molybdopterin-guanine d 97.1 0.00015 5.2E-09 50.6 1.4 22 30-51 4-25 (171)
324 1e4v_A Adenylate kinase; trans 97.1 0.00029 1E-08 50.8 3.0 22 29-50 1-22 (214)
325 2jeo_A Uridine-cytidine kinase 97.1 0.00034 1.2E-08 51.6 3.4 25 26-50 23-47 (245)
326 3uie_A Adenylyl-sulfate kinase 97.1 0.00039 1.3E-08 49.6 3.6 24 28-51 25-48 (200)
327 1tev_A UMP-CMP kinase; ploop, 97.1 0.00037 1.3E-08 49.1 3.4 23 28-50 3-25 (196)
328 3tqc_A Pantothenate kinase; bi 97.1 0.00041 1.4E-08 53.3 3.7 26 25-50 89-114 (321)
329 1lw7_A Transcriptional regulat 97.1 0.0004 1.4E-08 54.3 3.8 33 19-51 159-193 (365)
330 3jvv_A Twitching mobility prot 97.0 0.0003 1E-08 54.9 2.9 22 30-51 125-146 (356)
331 2pt5_A Shikimate kinase, SK; a 97.0 0.00038 1.3E-08 47.9 3.2 22 29-50 1-22 (168)
332 3fvq_A Fe(3+) IONS import ATP- 97.0 0.00031 1E-08 54.8 3.0 23 30-52 32-54 (359)
333 1uj2_A Uridine-cytidine kinase 97.0 0.00038 1.3E-08 51.6 3.3 25 26-50 20-44 (252)
334 1uf9_A TT1252 protein; P-loop, 97.0 0.0004 1.4E-08 49.3 3.4 25 27-51 7-31 (203)
335 2bbs_A Cystic fibrosis transme 97.0 0.00034 1.2E-08 53.0 3.1 23 30-52 66-88 (290)
336 1aky_A Adenylate kinase; ATP:A 97.0 0.00038 1.3E-08 50.3 3.2 23 28-50 4-26 (220)
337 1y63_A LMAJ004144AAA protein; 97.0 0.00043 1.5E-08 48.7 3.4 24 28-51 10-33 (184)
338 2plr_A DTMP kinase, probable t 97.0 0.00042 1.4E-08 49.5 3.4 22 29-50 5-26 (213)
339 3tui_C Methionine import ATP-b 97.0 0.00036 1.2E-08 54.5 3.1 23 30-52 56-78 (366)
340 1z47_A CYSA, putative ABC-tran 97.0 0.00037 1.3E-08 54.3 3.1 23 30-52 43-65 (355)
341 1odf_A YGR205W, hypothetical 3 97.0 0.00055 1.9E-08 51.9 3.9 25 26-50 29-53 (290)
342 3iij_A Coilin-interacting nucl 97.0 0.00045 1.5E-08 48.3 3.2 23 28-50 11-33 (180)
343 3rlf_A Maltose/maltodextrin im 97.0 0.0004 1.4E-08 54.6 3.1 23 30-52 31-53 (381)
344 2yyz_A Sugar ABC transporter, 97.0 0.00039 1.3E-08 54.3 3.1 23 30-52 31-53 (359)
345 1ukz_A Uridylate kinase; trans 97.0 0.00062 2.1E-08 48.5 3.9 24 27-50 14-37 (203)
346 3trf_A Shikimate kinase, SK; a 97.0 0.00045 1.5E-08 48.4 3.2 22 29-50 6-27 (185)
347 1zd8_A GTP:AMP phosphotransfer 97.0 0.00042 1.4E-08 50.4 3.1 22 28-49 7-28 (227)
348 1gvn_B Zeta; postsegregational 97.0 0.00051 1.7E-08 52.0 3.6 25 26-50 31-55 (287)
349 2it1_A 362AA long hypothetical 97.0 0.00041 1.4E-08 54.2 3.1 23 30-52 31-53 (362)
350 2kjq_A DNAA-related protein; s 97.0 0.00029 9.7E-09 48.0 2.0 23 29-51 37-59 (149)
351 1rz3_A Hypothetical protein rb 97.0 0.00049 1.7E-08 49.1 3.3 24 27-50 21-44 (201)
352 2v54_A DTMP kinase, thymidylat 97.0 0.0005 1.7E-08 48.9 3.2 24 28-51 4-27 (204)
353 1g29_1 MALK, maltose transport 96.9 0.00044 1.5E-08 54.3 3.1 23 30-52 31-53 (372)
354 1sq5_A Pantothenate kinase; P- 96.9 0.00055 1.9E-08 52.3 3.6 24 27-50 79-102 (308)
355 1v43_A Sugar-binding transport 96.9 0.00046 1.6E-08 54.1 3.1 23 30-52 39-61 (372)
356 2xb4_A Adenylate kinase; ATP-b 96.9 0.00051 1.7E-08 49.9 3.2 22 29-50 1-22 (223)
357 1zak_A Adenylate kinase; ATP:A 96.9 0.0004 1.4E-08 50.3 2.7 23 28-50 5-27 (222)
358 2gza_A Type IV secretion syste 96.9 0.00042 1.4E-08 54.2 2.9 23 29-51 176-198 (361)
359 2yvu_A Probable adenylyl-sulfa 96.9 0.0007 2.4E-08 47.6 3.8 24 27-50 12-35 (186)
360 2x8a_A Nuclear valosin-contain 96.9 0.00044 1.5E-08 52.0 2.9 20 31-50 47-66 (274)
361 1via_A Shikimate kinase; struc 96.9 0.00047 1.6E-08 48.0 2.8 21 30-50 6-26 (175)
362 2pt7_A CAG-ALFA; ATPase, prote 96.9 0.00039 1.3E-08 53.7 2.6 23 29-51 172-194 (330)
363 2pbr_A DTMP kinase, thymidylat 96.9 0.00055 1.9E-08 48.2 3.2 21 30-50 2-22 (195)
364 3d31_A Sulfate/molybdate ABC t 96.9 0.00037 1.3E-08 54.2 2.3 23 30-52 28-50 (348)
365 3umf_A Adenylate kinase; rossm 96.9 0.00079 2.7E-08 48.8 3.9 22 29-50 30-51 (217)
366 2vp4_A Deoxynucleoside kinase; 96.9 0.00065 2.2E-08 49.6 3.5 26 26-51 18-43 (230)
367 2c95_A Adenylate kinase 1; tra 96.9 0.00052 1.8E-08 48.5 2.9 22 29-50 10-31 (196)
368 2ewv_A Twitching motility prot 96.9 0.00051 1.8E-08 53.9 3.1 22 29-50 137-158 (372)
369 1rj9_A FTSY, signal recognitio 96.9 0.00049 1.7E-08 52.5 2.9 84 78-171 186-281 (304)
370 1qf9_A UMP/CMP kinase, protein 96.9 0.00071 2.4E-08 47.5 3.6 23 28-50 6-28 (194)
371 1nn5_A Similar to deoxythymidy 96.9 0.0006 2.1E-08 48.9 3.1 23 28-50 9-31 (215)
372 2bwj_A Adenylate kinase 5; pho 96.9 0.00058 2E-08 48.3 3.0 23 28-50 12-34 (199)
373 1p9r_A General secretion pathw 96.9 0.0005 1.7E-08 54.8 2.9 22 30-51 169-190 (418)
374 1ixz_A ATP-dependent metallopr 96.9 0.00054 1.9E-08 50.6 2.9 21 31-51 52-72 (254)
375 2z0h_A DTMP kinase, thymidylat 96.9 0.00064 2.2E-08 48.0 3.2 21 30-50 2-22 (197)
376 2f6r_A COA synthase, bifunctio 96.9 0.00098 3.3E-08 50.2 4.3 24 26-49 73-96 (281)
377 2p5t_B PEZT; postsegregational 96.9 0.00051 1.7E-08 50.9 2.7 26 25-50 29-54 (253)
378 3b9q_A Chloroplast SRP recepto 96.9 0.00056 1.9E-08 52.1 2.9 24 27-50 99-122 (302)
379 3be4_A Adenylate kinase; malar 96.8 0.00065 2.2E-08 49.1 3.1 23 28-50 5-27 (217)
380 1vht_A Dephospho-COA kinase; s 96.8 0.0008 2.7E-08 48.5 3.5 23 28-50 4-26 (218)
381 2iyv_A Shikimate kinase, SK; t 96.8 0.00055 1.9E-08 47.9 2.6 22 29-50 3-24 (184)
382 3gd7_A Fusion complex of cysti 96.8 0.0006 2E-08 53.8 3.0 22 30-51 49-70 (390)
383 2oap_1 GSPE-2, type II secreti 96.8 0.00059 2E-08 55.8 3.0 23 29-51 261-283 (511)
384 4e22_A Cytidylate kinase; P-lo 96.8 0.00076 2.6E-08 50.0 3.4 22 28-49 27-48 (252)
385 1xjc_A MOBB protein homolog; s 96.8 0.00073 2.5E-08 47.0 2.9 22 29-50 5-26 (169)
386 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.0008 2.8E-08 50.1 3.4 22 29-50 5-26 (260)
387 2grj_A Dephospho-COA kinase; T 96.8 0.00095 3.3E-08 47.4 3.6 26 25-50 9-34 (192)
388 1gtv_A TMK, thymidylate kinase 96.8 0.00029 1E-08 50.5 0.9 21 30-50 2-22 (214)
389 1oxx_K GLCV, glucose, ABC tran 96.8 0.00037 1.3E-08 54.3 1.5 23 30-52 33-55 (353)
390 3kta_A Chromosome segregation 96.8 0.00078 2.7E-08 47.1 3.0 21 30-50 28-48 (182)
391 1e6c_A Shikimate kinase; phosp 96.8 0.00079 2.7E-08 46.5 3.0 22 29-50 3-24 (173)
392 4ido_A Atlastin-1; GTPase, GTP 96.8 0.0022 7.5E-08 51.4 5.8 24 26-49 65-88 (457)
393 2vli_A Antibiotic resistance p 96.8 0.00057 1.9E-08 47.7 2.2 23 28-50 5-27 (183)
394 2pez_A Bifunctional 3'-phospho 96.8 0.00095 3.2E-08 46.6 3.4 23 28-50 5-27 (179)
395 1ak2_A Adenylate kinase isoenz 96.8 0.00089 3.1E-08 48.9 3.3 23 28-50 16-38 (233)
396 1jbk_A CLPB protein; beta barr 96.8 0.00089 3E-08 46.7 3.2 23 29-51 44-66 (195)
397 2ze6_A Isopentenyl transferase 96.7 0.00078 2.7E-08 50.0 2.9 21 30-50 3-23 (253)
398 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.00078 2.7E-08 48.8 2.9 22 29-50 24-45 (235)
399 1iy2_A ATP-dependent metallopr 96.7 0.00081 2.8E-08 50.5 2.9 21 31-51 76-96 (278)
400 3r20_A Cytidylate kinase; stru 96.7 0.00097 3.3E-08 48.8 3.2 24 27-50 8-31 (233)
401 1in4_A RUVB, holliday junction 96.7 0.00082 2.8E-08 51.9 2.9 23 29-51 52-74 (334)
402 2npi_A Protein CLP1; CLP1-PCF1 96.7 0.0007 2.4E-08 54.7 2.6 23 29-51 139-161 (460)
403 3co5_A Putative two-component 96.7 0.004 1.4E-07 41.8 6.0 24 28-51 27-50 (143)
404 3gmt_A Adenylate kinase; ssgci 96.7 0.0011 3.9E-08 48.3 3.3 26 25-50 5-30 (230)
405 1zuh_A Shikimate kinase; alpha 96.7 0.0012 4E-08 45.5 3.2 23 28-50 7-29 (168)
406 2og2_A Putative signal recogni 96.7 0.00095 3.2E-08 52.1 2.9 24 27-50 156-179 (359)
407 1cr0_A DNA primase/helicase; R 96.6 0.00096 3.3E-08 50.5 2.8 22 30-51 37-58 (296)
408 2yhs_A FTSY, cell division pro 96.6 0.0011 3.7E-08 53.8 2.9 84 77-171 376-472 (503)
409 1nij_A Hypothetical protein YJ 96.6 0.00083 2.8E-08 51.6 2.2 22 30-51 6-27 (318)
410 1m7g_A Adenylylsulfate kinase; 96.6 0.0015 5.1E-08 46.9 3.4 23 28-50 25-47 (211)
411 2obl_A ESCN; ATPase, hydrolase 96.6 0.0012 4.1E-08 51.3 3.0 24 29-52 72-95 (347)
412 1lv7_A FTSH; alpha/beta domain 96.6 0.0012 4.1E-08 48.9 2.9 23 28-50 45-67 (257)
413 1f2t_A RAD50 ABC-ATPase; DNA d 96.6 0.0014 4.9E-08 44.5 3.1 19 31-49 26-44 (149)
414 2cvh_A DNA repair and recombin 96.6 0.0012 4.2E-08 47.3 2.9 22 29-50 21-42 (220)
415 1yqt_A RNAse L inhibitor; ATP- 96.6 0.0014 4.6E-08 54.1 3.4 24 29-52 48-71 (538)
416 1n0w_A DNA repair protein RAD5 96.5 0.0013 4.5E-08 48.0 2.9 23 29-51 25-47 (243)
417 3nwj_A ATSK2; P loop, shikimat 96.5 0.0012 4.1E-08 48.9 2.7 23 28-50 48-70 (250)
418 2p65_A Hypothetical protein PF 96.5 0.0011 3.7E-08 46.1 2.3 24 28-51 43-66 (187)
419 1ltq_A Polynucleotide kinase; 96.5 0.0016 5.5E-08 49.3 3.4 22 29-50 3-24 (301)
420 3uc9_A Increased recombination 96.5 0.0029 9.8E-08 46.0 4.4 89 26-120 27-122 (233)
421 4eaq_A DTMP kinase, thymidylat 96.5 0.0018 6.2E-08 47.2 3.5 25 27-51 25-49 (229)
422 3bos_A Putative DNA replicatio 96.5 0.0016 5.3E-08 47.3 3.1 23 28-50 52-74 (242)
423 3n70_A Transport activator; si 96.5 0.00029 1E-08 47.6 -0.7 25 27-51 23-47 (145)
424 3euj_A Chromosome partition pr 96.5 0.0013 4.6E-08 53.2 2.9 22 29-50 30-51 (483)
425 2w58_A DNAI, primosome compone 96.5 0.0017 5.7E-08 46.2 3.1 23 29-51 55-77 (202)
426 3b60_A Lipid A export ATP-bind 96.5 0.0015 5E-08 54.4 3.1 22 30-51 371-392 (582)
427 3ozx_A RNAse L inhibitor; ATP 96.5 0.0014 4.9E-08 53.9 3.0 24 29-52 26-49 (538)
428 1tue_A Replication protein E1; 96.5 0.0013 4.5E-08 47.1 2.3 22 29-50 59-80 (212)
429 1svm_A Large T antigen; AAA+ f 96.4 0.0015 5.2E-08 51.3 2.9 24 27-50 168-191 (377)
430 3b5x_A Lipid A export ATP-bind 96.4 0.0017 5.7E-08 54.1 3.2 23 29-51 370-392 (582)
431 2dpy_A FLII, flagellum-specifi 96.4 0.0017 6E-08 52.0 3.0 24 29-52 158-181 (438)
432 3j16_B RLI1P; ribosome recycli 96.4 0.0018 6.1E-08 54.1 3.1 24 29-52 104-127 (608)
433 2yl4_A ATP-binding cassette SU 96.4 0.0015 5.1E-08 54.5 2.5 22 30-51 372-393 (595)
434 3t15_A Ribulose bisphosphate c 96.3 0.0025 8.4E-08 48.3 3.4 24 27-50 35-58 (293)
435 3qf4_B Uncharacterized ABC tra 96.3 0.0016 5.6E-08 54.3 2.6 23 29-51 382-404 (598)
436 1q3t_A Cytidylate kinase; nucl 96.3 0.0024 8.3E-08 46.6 3.2 24 27-50 15-38 (236)
437 3ozx_A RNAse L inhibitor; ATP 96.3 0.002 7E-08 53.0 3.0 23 30-52 296-318 (538)
438 3qf7_A RAD50; ABC-ATPase, ATPa 96.3 0.0022 7.6E-08 50.2 3.1 19 31-49 26-44 (365)
439 3bk7_A ABC transporter ATP-bin 96.3 0.0023 7.8E-08 53.5 3.3 24 29-52 118-141 (607)
440 1sxj_E Activator 1 40 kDa subu 96.3 0.0015 5.2E-08 50.5 2.1 20 31-50 39-58 (354)
441 3b9p_A CG5977-PA, isoform A; A 96.3 0.0021 7.2E-08 48.5 2.8 23 28-50 54-76 (297)
442 1yqt_A RNAse L inhibitor; ATP- 96.3 0.0024 8.3E-08 52.6 3.4 23 30-52 314-336 (538)
443 1nlf_A Regulatory protein REPA 96.3 0.0021 7.1E-08 48.3 2.8 22 29-50 31-52 (279)
444 4a82_A Cystic fibrosis transme 96.3 0.0014 4.9E-08 54.4 1.8 22 30-51 369-390 (578)
445 1njg_A DNA polymerase III subu 96.3 0.0024 8.3E-08 46.1 2.9 21 30-50 47-67 (250)
446 2qz4_A Paraplegin; AAA+, SPG7, 96.2 0.0028 9.7E-08 46.7 3.3 24 27-50 38-61 (262)
447 3h4m_A Proteasome-activating n 96.2 0.0024 8.2E-08 47.9 2.8 24 28-51 51-74 (285)
448 2chg_A Replication factor C sm 96.2 0.0026 8.8E-08 45.4 2.9 21 30-50 40-60 (226)
449 3cf0_A Transitional endoplasmi 96.2 0.0025 8.5E-08 48.4 2.8 23 28-50 49-71 (301)
450 3zvl_A Bifunctional polynucleo 96.2 0.0042 1.4E-07 49.5 4.3 24 27-50 257-280 (416)
451 3bk7_A ABC transporter ATP-bin 96.2 0.0028 9.7E-08 52.9 3.4 23 30-52 384-406 (607)
452 3qf4_A ABC transporter, ATP-bi 96.2 0.0019 6.6E-08 53.8 2.3 22 30-51 371-392 (587)
453 3ake_A Cytidylate kinase; CMP 96.2 0.0031 1.1E-07 44.8 3.2 21 30-50 4-24 (208)
454 1l8q_A Chromosomal replication 96.2 0.0027 9.2E-08 48.6 2.8 23 28-50 37-59 (324)
455 3syl_A Protein CBBX; photosynt 96.1 0.0037 1.3E-07 47.4 3.5 24 27-50 66-89 (309)
456 1sxj_D Activator 1 41 kDa subu 96.1 0.0025 8.6E-08 49.2 2.5 21 31-51 61-81 (353)
457 1pzn_A RAD51, DNA repair and r 96.1 0.0028 9.5E-08 49.3 2.8 24 28-51 131-154 (349)
458 1d2n_A N-ethylmaleimide-sensit 96.1 0.0045 1.5E-07 46.1 3.8 26 26-51 62-87 (272)
459 3j16_B RLI1P; ribosome recycli 96.1 0.0031 1.1E-07 52.7 3.1 23 31-53 381-403 (608)
460 2px0_A Flagellar biosynthesis 96.1 0.003 1E-07 48.0 2.8 85 77-171 183-273 (296)
461 1qhl_A Protein (cell division 96.1 0.00048 1.6E-08 50.3 -1.7 22 31-52 30-51 (227)
462 4dzz_A Plasmid partitioning pr 96.1 0.011 3.8E-07 41.8 5.6 85 77-168 76-162 (206)
463 2qmh_A HPR kinase/phosphorylas 96.1 0.0038 1.3E-07 44.4 2.9 25 28-52 34-58 (205)
464 1c9k_A COBU, adenosylcobinamid 96.0 0.0042 1.4E-07 43.5 3.1 21 31-51 2-22 (180)
465 2dr3_A UPF0273 protein PH0284; 96.0 0.0036 1.2E-07 45.6 3.0 22 29-50 24-45 (247)
466 3qks_A DNA double-strand break 96.0 0.0042 1.4E-07 44.4 3.1 20 30-49 25-44 (203)
467 4fcw_A Chaperone protein CLPB; 96.0 0.0057 2E-07 46.3 4.0 23 29-51 48-70 (311)
468 2qby_A CDC6 homolog 1, cell di 96.0 0.0034 1.2E-07 48.8 2.8 24 28-51 45-68 (386)
469 2iw3_A Elongation factor 3A; a 96.0 0.0042 1.4E-07 54.5 3.5 24 30-53 463-486 (986)
470 2ocp_A DGK, deoxyguanosine kin 95.9 0.0052 1.8E-07 45.0 3.4 23 28-50 2-24 (241)
471 1ofh_A ATP-dependent HSL prote 95.9 0.0042 1.4E-07 47.0 2.9 23 28-50 50-72 (310)
472 1fnn_A CDC6P, cell division co 95.9 0.0045 1.5E-07 48.3 3.2 22 30-51 46-67 (389)
473 3eie_A Vacuolar protein sortin 95.9 0.006 2E-07 46.8 3.8 24 27-50 50-73 (322)
474 1p5z_B DCK, deoxycytidine kina 95.9 0.0032 1.1E-07 46.8 2.2 24 27-50 23-46 (263)
475 1sxj_C Activator 1 40 kDa subu 95.9 0.0043 1.5E-07 47.9 2.8 22 30-51 48-69 (340)
476 2h92_A Cytidylate kinase; ross 95.9 0.0045 1.5E-07 44.5 2.8 22 29-50 4-25 (219)
477 2iw3_A Elongation factor 3A; a 95.9 0.0029 9.9E-08 55.5 2.0 23 30-52 701-723 (986)
478 1xwi_A SKD1 protein; VPS4B, AA 95.9 0.0045 1.5E-07 47.5 2.8 24 28-51 45-68 (322)
479 4b4t_M 26S protease regulatory 95.8 0.0059 2E-07 48.8 3.5 25 26-50 213-237 (434)
480 3crm_A TRNA delta(2)-isopenten 95.8 0.0062 2.1E-07 46.7 3.5 22 29-50 6-27 (323)
481 1a7j_A Phosphoribulokinase; tr 95.8 0.0026 8.7E-08 48.2 1.3 22 29-50 6-27 (290)
482 3d3q_A TRNA delta(2)-isopenten 95.8 0.005 1.7E-07 47.6 2.9 22 29-50 8-29 (340)
483 2ga8_A Hypothetical 39.9 kDa p 95.8 0.0061 2.1E-07 47.4 3.3 23 28-50 24-46 (359)
484 4b4t_K 26S protease regulatory 95.8 0.0065 2.2E-07 48.5 3.5 24 27-50 205-228 (428)
485 4f4c_A Multidrug resistance pr 95.8 0.0032 1.1E-07 57.3 1.9 21 30-50 1107-1127(1321)
486 3cr8_A Sulfate adenylyltranfer 95.8 0.0041 1.4E-07 51.3 2.4 25 27-51 368-392 (552)
487 2r62_A Cell division protease 95.7 0.0024 8.3E-08 47.4 0.8 21 30-50 46-66 (268)
488 3lda_A DNA repair protein RAD5 95.7 0.0058 2E-07 48.4 2.9 21 29-49 179-199 (400)
489 4b4t_L 26S protease subunit RP 95.7 0.0075 2.6E-07 48.3 3.5 25 26-50 213-237 (437)
490 2v1u_A Cell division control p 95.7 0.005 1.7E-07 47.9 2.5 25 27-51 43-67 (387)
491 3v9p_A DTMP kinase, thymidylat 95.7 0.0058 2E-07 44.5 2.6 24 27-50 24-47 (227)
492 3m6a_A ATP-dependent protease 95.7 0.0056 1.9E-07 50.5 2.8 22 29-50 109-130 (543)
493 2qgz_A Helicase loader, putati 95.7 0.0069 2.3E-07 46.2 3.1 23 28-50 152-174 (308)
494 2dhr_A FTSH; AAA+ protein, hex 95.6 0.0059 2E-07 49.8 2.8 22 30-51 66-87 (499)
495 3exa_A TRNA delta(2)-isopenten 95.6 0.007 2.4E-07 46.2 3.1 21 30-50 5-25 (322)
496 3ld9_A DTMP kinase, thymidylat 95.6 0.0087 3E-07 43.4 3.5 24 27-50 20-43 (223)
497 3ea0_A ATPase, para family; al 95.6 0.12 4.1E-06 37.4 9.7 87 77-171 119-205 (245)
498 1tf7_A KAIC; homohexamer, hexa 95.6 0.0057 2E-07 50.2 2.8 20 31-50 42-63 (525)
499 3qkt_A DNA double-strand break 95.6 0.007 2.4E-07 46.8 3.1 18 32-49 27-44 (339)
500 2bjv_A PSP operon transcriptio 95.6 0.0069 2.4E-07 44.9 2.9 24 28-51 29-52 (265)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.3e-39 Score=239.31 Aligned_cols=166 Identities=36% Similarity=0.635 Sum_probs=146.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
+.+||+|+|.+|||||||+++|+.+.+...+.+|.+.++....+..++..+.+.||||+|++.|..+.+.|+++++++++
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~il 91 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVV 91 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEE
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEE
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709 107 VYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (203)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 186 (203)
|||++++++|+.+..|+..+......++|+++|+||+|+.+.+.+..+++.+++..++++|++|||++|.||+++|+.|+
T Consensus 92 v~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~ 171 (216)
T 4dkx_A 92 VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 171 (216)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred EeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHH
Confidence 99999999999999999999888888999999999999998889999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 048709 187 QEIYAL 192 (203)
Q Consensus 187 ~~~~~~ 192 (203)
+.+...
T Consensus 172 ~~i~~~ 177 (216)
T 4dkx_A 172 AALPGM 177 (216)
T ss_dssp HHC---
T ss_pred HHHHhh
Confidence 888653
No 2
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=3.4e-36 Score=219.27 Aligned_cols=181 Identities=41% Similarity=0.654 Sum_probs=148.7
Q ss_pred ccccccCCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhh
Q 048709 14 HQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV 93 (203)
Q Consensus 14 ~~~~~~~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 93 (203)
.+......+...+..+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..+
T Consensus 15 ~~~~~~~~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 94 (201)
T 2hup_A 15 VPRGSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTI 94 (201)
T ss_dssp -----------CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHH
T ss_pred ccCCCCCcccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHH
Confidence 34444444555677899999999999999999999999887777788888888888888998899999999999999999
Q ss_pred hHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC-eEEEEec
Q 048709 94 TSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL-FFSEASA 172 (203)
Q Consensus 94 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa 172 (203)
+..+++.+|++++|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..+++.+++...++ ++++|||
T Consensus 95 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA 174 (201)
T 2hup_A 95 TQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSA 174 (201)
T ss_dssp HHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBT
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeC
Confidence 999999999999999999999999999999998887767899999999999987777888999999999999 9999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhc
Q 048709 173 LNGDNVDTAFFRLLQEIYALSK 194 (203)
Q Consensus 173 ~~~~~i~~~~~~i~~~~~~~~~ 194 (203)
++|.|++++|++|++.+.+...
T Consensus 175 ~~g~gi~~l~~~l~~~i~~~~~ 196 (201)
T 2hup_A 175 KDSSNVEEAFLRVATELIMRHG 196 (201)
T ss_dssp TTTBSHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999987544
No 3
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-35 Score=216.45 Aligned_cols=171 Identities=39% Similarity=0.672 Sum_probs=157.3
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (203)
Q Consensus 24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 103 (203)
..+..+||+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+..+...+++.+|+
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA 101 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCE
Confidence 34678999999999999999999999999888888888888888888899999999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709 104 AVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF 183 (203)
Q Consensus 104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 183 (203)
+++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...++++++|||++|.|++++|+
T Consensus 102 ~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 181 (201)
T 2ew1_A 102 LILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL 181 (201)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999998887767899999999999987777888999999999999999999999999999999
Q ss_pred HHHHHHHHhhc
Q 048709 184 RLLQEIYALSK 194 (203)
Q Consensus 184 ~i~~~~~~~~~ 194 (203)
++.+.+.+..+
T Consensus 182 ~l~~~i~~~~~ 192 (201)
T 2ew1_A 182 DLACRLISEAR 192 (201)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99999987544
No 4
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=1.7e-35 Score=213.78 Aligned_cols=176 Identities=47% Similarity=0.736 Sum_probs=155.7
Q ss_pred cCCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhh
Q 048709 19 KMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYY 98 (203)
Q Consensus 19 ~~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~ 98 (203)
...+......+||+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..++
T Consensus 12 ~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 91 (191)
T 2a5j_A 12 SGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYY 91 (191)
T ss_dssp CCCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHH
T ss_pred cccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHh
Confidence 34445566789999999999999999999999998877778888888888888999999999999999999999999999
Q ss_pred cCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 048709 99 RGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNV 178 (203)
Q Consensus 99 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 178 (203)
+++|++++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|+
T Consensus 92 ~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi 171 (191)
T 2a5j_A 92 RGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNV 171 (191)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTH
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999999999999999999988877678999999999999877778889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q 048709 179 DTAFFRLLQEIYALSK 194 (203)
Q Consensus 179 ~~~~~~i~~~~~~~~~ 194 (203)
+++|++|.+.+.+..+
T Consensus 172 ~~l~~~l~~~i~~~~~ 187 (191)
T 2a5j_A 172 EEAFINTAKEIYRKIQ 187 (191)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887543
No 5
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=3e-35 Score=212.69 Aligned_cols=178 Identities=53% Similarity=0.842 Sum_probs=157.5
Q ss_pred cccCCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHh
Q 048709 17 QDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSA 96 (203)
Q Consensus 17 ~~~~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~ 96 (203)
...+.....+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||.+.+...+..
T Consensus 14 ~~~~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 93 (193)
T 2oil_A 14 LVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSA 93 (193)
T ss_dssp ------CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHH
T ss_pred cccccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHH
Confidence 33444455677899999999999999999999999988888788888888888888999999999999999999999999
Q ss_pred hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCC
Q 048709 97 YYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGD 176 (203)
Q Consensus 97 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 176 (203)
++..+|++++|+|++++.++..+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||++|.
T Consensus 94 ~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 173 (193)
T 2oil_A 94 YYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDST 173 (193)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 99999999999999999999999999998887766789999999999998777788899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhc
Q 048709 177 NVDTAFFRLLQEIYALSK 194 (203)
Q Consensus 177 ~i~~~~~~i~~~~~~~~~ 194 (203)
|++++|++|.+.+.+...
T Consensus 174 gi~~l~~~l~~~i~~~~~ 191 (193)
T 2oil_A 174 NVELAFETVLKEIFAKVS 191 (193)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhh
Confidence 999999999999877543
No 6
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=4.3e-36 Score=215.24 Aligned_cols=173 Identities=45% Similarity=0.745 Sum_probs=128.4
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 104 (203)
.+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 45789999999999999999999998887777777888888888888899999999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709 105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (203)
Q Consensus 105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 184 (203)
++|+|++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 164 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT 164 (183)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988876678999999999999877778889999999999999999999999999999999
Q ss_pred HHHHHHHhhcccc
Q 048709 185 LLQEIYALSKKEL 197 (203)
Q Consensus 185 i~~~~~~~~~~~~ 197 (203)
|.+.+.....+..
T Consensus 165 l~~~i~~~~~~~~ 177 (183)
T 2fu5_C 165 LARDIKAKMDKNW 177 (183)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHhhccc
Confidence 9999987655443
No 7
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=4.5e-35 Score=210.33 Aligned_cols=171 Identities=43% Similarity=0.721 Sum_probs=156.9
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (203)
Q Consensus 24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 103 (203)
..+..++|+|+|.+|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 85 (186)
T 2bme_A 6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG 85 (186)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence 44678999999999999999999999999888887888888888888889998999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709 104 AVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF 183 (203)
Q Consensus 104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 183 (203)
+++|+|++++.++..+..|+..+......+.|+++|+||+|+...+.+..+++.+++...+++++++||++|.|++++|+
T Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 165 (186)
T 2bme_A 86 ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFV 165 (186)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence 99999999999999999999888877667899999999999987677888899999999999999999999999999999
Q ss_pred HHHHHHHHhhc
Q 048709 184 RLLQEIYALSK 194 (203)
Q Consensus 184 ~i~~~~~~~~~ 194 (203)
++.+.+.+...
T Consensus 166 ~l~~~~~~~~~ 176 (186)
T 2bme_A 166 QCARKILNKIE 176 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999887543
No 8
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=8.7e-35 Score=210.49 Aligned_cols=171 Identities=44% Similarity=0.729 Sum_probs=158.7
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (203)
Q Consensus 24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 103 (203)
..+..+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (196)
T 3tkl_A 12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 91 (196)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCE
Confidence 34678999999999999999999999999888888898889998999999999999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709 104 AVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF 183 (203)
Q Consensus 104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 183 (203)
+++|+|++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++..+++...+++++++||++|.|++++|+
T Consensus 92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 171 (196)
T 3tkl_A 92 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM 171 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999888778899999999999988778888999999999999999999999999999999
Q ss_pred HHHHHHHHhhc
Q 048709 184 RLLQEIYALSK 194 (203)
Q Consensus 184 ~i~~~~~~~~~ 194 (203)
+|.+.+.+...
T Consensus 172 ~l~~~i~~~~~ 182 (196)
T 3tkl_A 172 TMAAEIKKRMG 182 (196)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHhc
Confidence 99999987544
No 9
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=5.5e-35 Score=208.38 Aligned_cols=168 Identities=49% Similarity=0.820 Sum_probs=154.1
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 048709 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGAL 102 (203)
Q Consensus 23 ~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 102 (203)
...+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence 34567899999999999999999999999988777788888888888888999999999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 048709 103 GAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF 182 (203)
Q Consensus 103 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 182 (203)
++++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 169 (179)
T 1z0f_A 90 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF 169 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999998888777789999999999998777788899999999999999999999999999999
Q ss_pred HHHHHHHH
Q 048709 183 FRLLQEIY 190 (203)
Q Consensus 183 ~~i~~~~~ 190 (203)
+++.+.+.
T Consensus 170 ~~l~~~i~ 177 (179)
T 1z0f_A 170 LEAAKKIY 177 (179)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 99998774
No 10
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=8.8e-35 Score=209.62 Aligned_cols=170 Identities=44% Similarity=0.684 Sum_probs=155.5
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 048709 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGAL 102 (203)
Q Consensus 23 ~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 102 (203)
...+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.+|||||++.+...+..++..+|
T Consensus 17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 96 (189)
T 2gf9_A 17 RGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAM 96 (189)
T ss_dssp TTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCS
T ss_pred cccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCC
Confidence 34567899999999999999999999999988777788888888888888889999999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 048709 103 GAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF 182 (203)
Q Consensus 103 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 182 (203)
++++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|
T Consensus 97 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 176 (189)
T 2gf9_A 97 GFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVF 176 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 99999999999999999999998888766789999999999998777788889999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 048709 183 FRLLQEIYAL 192 (203)
Q Consensus 183 ~~i~~~~~~~ 192 (203)
++|.+.+.+.
T Consensus 177 ~~l~~~i~~~ 186 (189)
T 2gf9_A 177 ERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 11
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.9e-35 Score=208.22 Aligned_cols=173 Identities=43% Similarity=0.676 Sum_probs=155.3
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (203)
Q Consensus 24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 103 (203)
..+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++..+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 34678999999999999999999999999888888888888888889999999999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709 104 AVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF 183 (203)
Q Consensus 104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 183 (203)
+++|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFN 163 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 999999999999999999998887654 5799999999999988777888999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccc
Q 048709 184 RLLQEIYALSKKEL 197 (203)
Q Consensus 184 ~i~~~~~~~~~~~~ 197 (203)
+|.+.+....+...
T Consensus 164 ~l~~~~~~~~~~~~ 177 (181)
T 3tw8_B 164 CITELVLRAKKDNL 177 (181)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhhh
Confidence 99999988766543
No 12
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=9.7e-35 Score=207.65 Aligned_cols=168 Identities=40% Similarity=0.701 Sum_probs=153.0
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 104 (203)
....++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 45679999999999999999999999998887778888888888888898899999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709 105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (203)
Q Consensus 105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 184 (203)
++|+|++++.+++.+..|+..+.....++.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|++
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 168 (181)
T 2efe_B 89 IIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYE 168 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999988877778999999999999877778889999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 048709 185 LLQEIYAL 192 (203)
Q Consensus 185 i~~~~~~~ 192 (203)
|.+.+...
T Consensus 169 l~~~~~~~ 176 (181)
T 2efe_B 169 IARRLPRV 176 (181)
T ss_dssp HHHTCC--
T ss_pred HHHHHHhc
Confidence 99877543
No 13
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=1.3e-34 Score=211.38 Aligned_cols=170 Identities=44% Similarity=0.729 Sum_probs=156.8
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 104 (203)
.+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 45689999999999999999999999998888888888888888888999999999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709 105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (203)
Q Consensus 105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 184 (203)
++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|++
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 164 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLT 164 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988877678999999999999887778888999999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q 048709 185 LLQEIYALSK 194 (203)
Q Consensus 185 i~~~~~~~~~ 194 (203)
|.+.+.+...
T Consensus 165 l~~~i~~~~~ 174 (206)
T 2bcg_Y 165 MARQIKESMS 174 (206)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHh
Confidence 9999977543
No 14
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.5e-35 Score=211.33 Aligned_cols=177 Identities=39% Similarity=0.692 Sum_probs=147.9
Q ss_pred cccccCCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhh
Q 048709 15 QQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVT 94 (203)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 94 (203)
.......|.+.+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+
T Consensus 13 ~~~~~~~p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 92 (192)
T 2il1_A 13 GLVPRGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSIT 92 (192)
T ss_dssp ---------CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHH
T ss_pred ccCCCCCCcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHH
Confidence 33445556667789999999999999999999999998887777888888888888899999999999999999999999
Q ss_pred HhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHc-CCeEEEEecC
Q 048709 95 SAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQ-GLFFSEASAL 173 (203)
Q Consensus 95 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~ 173 (203)
..+++.+|++++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+++..+++.+++... +++++++||+
T Consensus 93 ~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 172 (192)
T 2il1_A 93 SAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAK 172 (192)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTT
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCC
Confidence 999999999999999999999999999988888777678999999999999877778888899998874 7899999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 048709 174 NGDNVDTAFFRLLQEIYA 191 (203)
Q Consensus 174 ~~~~i~~~~~~i~~~~~~ 191 (203)
+|.|++++|++|.+.+.+
T Consensus 173 ~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 173 DNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998864
No 15
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=4.1e-35 Score=207.51 Aligned_cols=167 Identities=36% Similarity=0.609 Sum_probs=145.9
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 104 (203)
.+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+......+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 35679999999999999999999999988877778888888888888888889999999999999999899999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709 105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (203)
Q Consensus 105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 184 (203)
++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 99999999999999999998887766678999999999999887778889999999999999999999999999999999
Q ss_pred HHHHHHH
Q 048709 185 LLQEIYA 191 (203)
Q Consensus 185 i~~~~~~ 191 (203)
|.+.+.+
T Consensus 163 l~~~~~~ 169 (170)
T 1z08_A 163 LCKRMIE 169 (170)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9988753
No 16
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=2e-34 Score=209.95 Aligned_cols=170 Identities=41% Similarity=0.682 Sum_probs=155.6
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 104 (203)
.+..+||+|+|.+|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||.+.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 35679999999999999999999999998877778888888888888899999999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709 105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (203)
Q Consensus 105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 184 (203)
++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 164 (203)
T 1zbd_A 85 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFER 164 (203)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999888776678999999999999887778889999999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q 048709 185 LLQEIYALSK 194 (203)
Q Consensus 185 i~~~~~~~~~ 194 (203)
|.+.+.+...
T Consensus 165 l~~~i~~~~~ 174 (203)
T 1zbd_A 165 LVDVICEKMS 174 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998877543
No 17
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.1e-35 Score=211.78 Aligned_cols=172 Identities=45% Similarity=0.720 Sum_probs=146.1
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 048709 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGAL 102 (203)
Q Consensus 23 ~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 102 (203)
...+..+||+|+|.+|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 99 (200)
T 2o52_A 20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA 99 (200)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence 33567899999999999999999999999888777788888888888888998899999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 048709 103 GAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF 182 (203)
Q Consensus 103 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 182 (203)
++++|+|++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++.+++...++++++|||++|.|++++|
T Consensus 100 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 179 (200)
T 2o52_A 100 GALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 179 (200)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999998887766789999999999998777788889999999999999999999999999999
Q ss_pred HHHHHHHHHhhc
Q 048709 183 FRLLQEIYALSK 194 (203)
Q Consensus 183 ~~i~~~~~~~~~ 194 (203)
++|++.+.....
T Consensus 180 ~~l~~~i~~~~~ 191 (200)
T 2o52_A 180 LKCARTILNKID 191 (200)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999877443
No 18
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=1.6e-34 Score=204.19 Aligned_cols=164 Identities=43% Similarity=0.690 Sum_probs=151.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
...++|+++|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 35799999999999999999999999888777788888888888888998999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709 106 VVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 185 (203)
+|+|++++.+++.+..|+..+.....+++|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i 163 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999998888777889999999999998767788889999999999999999999999999999999
Q ss_pred HHHH
Q 048709 186 LQEI 189 (203)
Q Consensus 186 ~~~~ 189 (203)
.+.+
T Consensus 164 ~~~~ 167 (170)
T 1r2q_A 164 AKKL 167 (170)
T ss_dssp HHTS
T ss_pred HHHH
Confidence 8754
No 19
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=3.3e-34 Score=202.69 Aligned_cols=164 Identities=40% Similarity=0.654 Sum_probs=151.9
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
...++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||.+.+......+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 45799999999999999999999999988777788888888888888999999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709 106 VVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 185 (203)
+|+|++++.+++.+..|+..+.....+..|+++|+||+|+.+.+++..++...++...+++++++||++|.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 163 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 99999999999999999999888767889999999999998877788889999999999999999999999999999999
Q ss_pred HHHH
Q 048709 186 LQEI 189 (203)
Q Consensus 186 ~~~~ 189 (203)
.+.+
T Consensus 164 ~~~i 167 (170)
T 1z0j_A 164 SRRI 167 (170)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8865
No 20
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=2.8e-34 Score=205.77 Aligned_cols=169 Identities=32% Similarity=0.464 Sum_probs=151.0
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCC
Q 048709 22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGA 101 (203)
Q Consensus 22 ~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 101 (203)
+......+||+|+|.+|+|||||+++|++..+...+.++.+..+ ......++..+.+.+|||||++.+..+...+++++
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 90 (183)
T 3kkq_A 12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90 (183)
T ss_dssp --CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHC
T ss_pred CccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 44456789999999999999999999999888877777776665 66777889999999999999999999999999999
Q ss_pred cEEEEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecC-CCCCHH
Q 048709 102 LGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASAL-NGDNVD 179 (203)
Q Consensus 102 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~-~~~~i~ 179 (203)
|++++|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+.+..+++.+++...+++++++||+ +|.|++
T Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~ 170 (183)
T 3kkq_A 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVD 170 (183)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHH
Confidence 999999999999999999999988876543 789999999999998877899999999999999999999999 999999
Q ss_pred HHHHHHHHHHHH
Q 048709 180 TAFFRLLQEIYA 191 (203)
Q Consensus 180 ~~~~~i~~~~~~ 191 (203)
++|++|.+.+.+
T Consensus 171 ~l~~~l~~~i~~ 182 (183)
T 3kkq_A 171 KTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
No 21
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=2.7e-34 Score=207.35 Aligned_cols=174 Identities=39% Similarity=0.621 Sum_probs=153.8
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeE-EEEEEECCE---------EEEEEEEeCCCchhhh
Q 048709 22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQ-TRTVTINSK---------IIKAQIWDTAGQERYR 91 (203)
Q Consensus 22 ~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~l~D~~g~~~~~ 91 (203)
....+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++. ...+.+++. .+.+.+|||||++.+.
T Consensus 5 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 84 (195)
T 3bc1_A 5 DGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFR 84 (195)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGH
T ss_pred ccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHH
Confidence 344567899999999999999999999998887777788877776 556666654 7899999999999999
Q ss_pred hhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEE
Q 048709 92 AVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEA 170 (203)
Q Consensus 92 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (203)
.....+++.+|++++|+|++++.++..+..|+..+..... .++|+++|+||+|+.+.+.+..+++.+++...+++++++
T Consensus 85 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (195)
T 3bc1_A 85 SLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFET 164 (195)
T ss_dssp HHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEE
Confidence 9999999999999999999999999999999998887765 789999999999998777788899999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHhhcc
Q 048709 171 SALNGDNVDTAFFRLLQEIYALSKK 195 (203)
Q Consensus 171 sa~~~~~i~~~~~~i~~~~~~~~~~ 195 (203)
||++|.|++++|++|.+.+.+...+
T Consensus 165 Sa~~~~~v~~l~~~l~~~~~~~~~~ 189 (195)
T 3bc1_A 165 SAANGTNISHAIEMLLDLIMKRMER 189 (195)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999998875543
No 22
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.2e-34 Score=203.54 Aligned_cols=163 Identities=44% Similarity=0.698 Sum_probs=149.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
..++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 35899999999999999999999998887777888888888888889999999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcc---cCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709 107 VYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM---WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF 183 (203)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 183 (203)
|+|++++.++..+..|+..+......+.|+++|+||+|+... +++..++..+++...+++++++||++|.|++++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999988877778999999999999765 56788889999999999999999999999999999
Q ss_pred HHHHHH
Q 048709 184 RLLQEI 189 (203)
Q Consensus 184 ~i~~~~ 189 (203)
+|.+.+
T Consensus 162 ~l~~~i 167 (170)
T 1ek0_A 162 GIGEKI 167 (170)
T ss_dssp HHHTTS
T ss_pred HHHHHH
Confidence 998754
No 23
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=2.7e-34 Score=205.15 Aligned_cols=172 Identities=29% Similarity=0.449 Sum_probs=151.7
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (203)
Q Consensus 24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 103 (203)
+....++|+|+|.+|+|||||+++|++..+...+.++.+..+. ..+.+++..+.+.+|||||++.+..++..++..+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 83 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG 83 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence 3456799999999999999999999999887777777766655 667788888999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 048709 104 AVVVYDITKRQSFDHVARGVEELRAHA-DSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF 182 (203)
Q Consensus 104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 182 (203)
+++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 163 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF 163 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence 999999999999999999998885543 4689999999999998877788899999999999999999999999999999
Q ss_pred HHHHHHHHHhhccc
Q 048709 183 FRLLQEIYALSKKE 196 (203)
Q Consensus 183 ~~i~~~~~~~~~~~ 196 (203)
++|.+.+.+..+..
T Consensus 164 ~~l~~~~~~~~~~~ 177 (181)
T 2fn4_A 164 EQLVRAVRKYQEQE 177 (181)
T ss_dssp HHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhhccC
Confidence 99999998765543
No 24
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=3.4e-34 Score=203.65 Aligned_cols=167 Identities=27% Similarity=0.339 Sum_probs=137.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh--hhhhhHhhhcCCcEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER--YRAVTSAYYRGALGA 104 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~~~~~~~~d~~ 104 (203)
..++|+|+|.+|+|||||+++|.+..+...+ ++.+.++....+.+++..+.+.+|||||.+. +..+...+++.+|++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 5699999999999999999999998876555 4566777777888899999999999999887 566778889999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709 105 VVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF 183 (203)
Q Consensus 105 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 183 (203)
++|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 161 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence 999999999999999999888876533 6799999999999987777888889999999999999999999999999999
Q ss_pred HHHHHHHHhhc
Q 048709 184 RLLQEIYALSK 194 (203)
Q Consensus 184 ~i~~~~~~~~~ 194 (203)
+|.+.+...++
T Consensus 162 ~l~~~~~~~~~ 172 (175)
T 2nzj_A 162 GVVRQLRLRRR 172 (175)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhhc
Confidence 99999876544
No 25
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=1.3e-34 Score=204.77 Aligned_cols=165 Identities=44% Similarity=0.747 Sum_probs=144.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46999999999999999999999998887777888888888888888888899999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709 107 VYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (203)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 186 (203)
|+|++++.+++.+..|+..+......+.|+++|+||+|+. .+....+++.+++...+++++++||++|.|++++|+++.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 160 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC-cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999998888777789999999999994 346778889999999999999999999999999999999
Q ss_pred HHHHHh
Q 048709 187 QEIYAL 192 (203)
Q Consensus 187 ~~~~~~ 192 (203)
+.+.+.
T Consensus 161 ~~~~~~ 166 (170)
T 1g16_A 161 KLIQEK 166 (170)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 988764
No 26
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.9e-34 Score=204.31 Aligned_cols=168 Identities=39% Similarity=0.645 Sum_probs=144.3
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 103 (203)
.+..++|+|+|.+|+|||||+++|++..+. ..+.++.+.++....+.+++..+.+.+|||||++.+...+..++.++|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 356799999999999999999999998875 3556788888877777889999999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709 104 AVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF 183 (203)
Q Consensus 104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 183 (203)
+++|+|++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++..+++...+++++++||++|.|++++|+
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 166 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFT 166 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999988887767899999999999988777888899999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 048709 184 RLLQEIYAL 192 (203)
Q Consensus 184 ~i~~~~~~~ 192 (203)
++.+.+.+.
T Consensus 167 ~l~~~~~~~ 175 (180)
T 2g6b_A 167 AIAKELKRR 175 (180)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 999988654
No 27
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.3e-34 Score=209.33 Aligned_cols=168 Identities=40% Similarity=0.637 Sum_probs=152.1
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (203)
Q Consensus 24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 103 (203)
..+..+||+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA 98 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence 34678999999999999999999999998877777888888888888888888899999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709 104 AVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF 183 (203)
Q Consensus 104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 183 (203)
+++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++++
T Consensus 99 iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 178 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQ 178 (192)
T ss_dssp EEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence 99999999999999999999998887767899999999999987667888999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 048709 184 RLLQEIYA 191 (203)
Q Consensus 184 ~i~~~~~~ 191 (203)
+|.+.+.+
T Consensus 179 ~l~~~i~~ 186 (192)
T 2fg5_A 179 GISRQIPP 186 (192)
T ss_dssp HHHHTCC-
T ss_pred HHHHHHHh
Confidence 99886643
No 28
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=209.30 Aligned_cols=173 Identities=24% Similarity=0.289 Sum_probs=145.8
Q ss_pred CCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhh-hhHhhhc
Q 048709 21 IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRA-VTSAYYR 99 (203)
Q Consensus 21 ~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~ 99 (203)
.+......+||+|+|.+|||||||+++|.+........++.+.++....+.+++..+.+.+|||+|++.+.. +...+++
T Consensus 16 ~~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~ 95 (195)
T 3cbq_A 16 FQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQ 95 (195)
T ss_dssp ------CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHH
T ss_pred CCCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhc
Confidence 344456789999999999999999999986554434445666677777788899999999999999987764 7788899
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 048709 100 GALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNV 178 (203)
Q Consensus 100 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 178 (203)
.+|++++|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+.+..+++.+++...++++++|||++|.|+
T Consensus 96 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v 175 (195)
T 3cbq_A 96 TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNT 175 (195)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCH
Confidence 99999999999999999999999988877654 58999999999999877778889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 048709 179 DTAFFRLLQEIYALS 193 (203)
Q Consensus 179 ~~~~~~i~~~~~~~~ 193 (203)
+++|+++++.+....
T Consensus 176 ~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 176 RELFEGAVRQIRLRR 190 (195)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999886543
No 29
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2e-35 Score=213.41 Aligned_cols=171 Identities=41% Similarity=0.666 Sum_probs=156.8
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 048709 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGAL 102 (203)
Q Consensus 23 ~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 102 (203)
...+..+||+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|
T Consensus 18 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (191)
T 3dz8_A 18 GNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAM 97 (191)
T ss_dssp TEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCC
T ss_pred cccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCC
Confidence 34567899999999999999999999998887777788888888888888888889999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 048709 103 GAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF 182 (203)
Q Consensus 103 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 182 (203)
++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 177 (191)
T 3dz8_A 98 GFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAF 177 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 99999999999999999999999988777889999999999998877888999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 048709 183 FRLLQEIYALS 193 (203)
Q Consensus 183 ~~i~~~~~~~~ 193 (203)
++|++.+.+..
T Consensus 178 ~~l~~~i~~~~ 188 (191)
T 3dz8_A 178 ERLVDAICDKM 188 (191)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhc
Confidence 99999987654
No 30
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=2.2e-34 Score=203.26 Aligned_cols=165 Identities=36% Similarity=0.573 Sum_probs=150.8
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
+..++|+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..+...+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999999888887888888888888888998999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709 106 VVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 185 (203)
+|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|+++++++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 161 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 9999999999999999988887665 678999999999998776788899999999999999999999999999999999
Q ss_pred HHHHHH
Q 048709 186 LQEIYA 191 (203)
Q Consensus 186 ~~~~~~ 191 (203)
.+.+.+
T Consensus 162 ~~~~~~ 167 (168)
T 1z2a_A 162 AEKHLQ 167 (168)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 988753
No 31
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=2.8e-34 Score=205.40 Aligned_cols=168 Identities=29% Similarity=0.381 Sum_probs=149.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
...++|+|+|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..+...+++.+|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 3579999999999999999999998888777777777666 667778999999999999999999989999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709 106 VVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 184 (203)
+|+|++++++++.+..|+..+..... .++|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 162 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR 162 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999988876654 68999999999999887788999999999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q 048709 185 LLQEIYALSK 194 (203)
Q Consensus 185 i~~~~~~~~~ 194 (203)
+++.+.....
T Consensus 163 l~~~~~~~~~ 172 (181)
T 3t5g_A 163 IILEAEKMDG 172 (181)
T ss_dssp HHHHHHTC--
T ss_pred HHHHHHHhcC
Confidence 9999877543
No 32
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=2.9e-34 Score=204.65 Aligned_cols=164 Identities=37% Similarity=0.639 Sum_probs=151.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++.++|++++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 92 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV 92 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 46999999999999999999999998888888888888888888899999999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709 107 VYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (203)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 186 (203)
|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|+++++++|.
T Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 172 (179)
T 2y8e_A 93 VYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 172 (179)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999988877667899999999999987777888899999999999999999999999999999998
Q ss_pred HHHH
Q 048709 187 QEIY 190 (203)
Q Consensus 187 ~~~~ 190 (203)
+.+.
T Consensus 173 ~~~~ 176 (179)
T 2y8e_A 173 AALP 176 (179)
T ss_dssp HTCC
T ss_pred HHHh
Confidence 8654
No 33
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-34 Score=212.53 Aligned_cols=169 Identities=60% Similarity=0.920 Sum_probs=147.2
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 104 (203)
.+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 35779999999999999999999999998888878888888888888999889999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709 105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (203)
Q Consensus 105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 184 (203)
|+|||++++.+++.+..|+..+......++|+++|+||+|+...+.+..+++.+++...+++++++||++|.|++++|++
T Consensus 90 ilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 169 (223)
T 3cpj_B 90 LIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEE 169 (223)
T ss_dssp EEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988776678999999999999877778888999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 048709 185 LLQEIYALS 193 (203)
Q Consensus 185 i~~~~~~~~ 193 (203)
|.+.+.+..
T Consensus 170 l~~~i~~~~ 178 (223)
T 3cpj_B 170 LINTIYQKV 178 (223)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHHHh
Confidence 999987643
No 34
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=4.4e-34 Score=202.07 Aligned_cols=165 Identities=25% Similarity=0.307 Sum_probs=135.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhh-hhHhhhcCCcEEEE
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRA-VTSAYYRGALGAVV 106 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~d~~i~ 106 (203)
.+||+++|.+|||||||+++|.+........++.+.+.....+.+++..+.+.+|||||++.+.. +...+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999998777666666777778888888999999999999999988876 67778899999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709 107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (203)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 185 (203)
|||++++++++.+..|+..+..... .++|+++|+||+|+.+.+.+..++..+++...+++++++||++|.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999998887665 589999999999998777899999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 048709 186 LQEIYAL 192 (203)
Q Consensus 186 ~~~~~~~ 192 (203)
++.+...
T Consensus 162 ~~~i~~~ 168 (169)
T 3q85_A 162 VRQIRLR 168 (169)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9987653
No 35
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=211.30 Aligned_cols=169 Identities=28% Similarity=0.435 Sum_probs=144.1
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 104 (203)
....+||+|+|.+|+|||||+++|.+..+...+.++.+..+ .....+++..+.+.+|||||++.+..++..++..+|++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 99 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY 99 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence 34679999999999999999999999998877777776555 55556677778999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709 105 VVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF 183 (203)
Q Consensus 105 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 183 (203)
++|||++++.+++.+..|+..+..... .++|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (201)
T 3oes_A 100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFT 179 (201)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999999998877644 6789999999999988778899999999999999999999999999999999
Q ss_pred HHHHHHHHhhc
Q 048709 184 RLLQEIYALSK 194 (203)
Q Consensus 184 ~i~~~~~~~~~ 194 (203)
+|.+.+.....
T Consensus 180 ~l~~~i~~~~~ 190 (201)
T 3oes_A 180 KVIQEIARVEN 190 (201)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHhhhh
Confidence 99999877544
No 36
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=6.8e-34 Score=204.97 Aligned_cols=166 Identities=39% Similarity=0.636 Sum_probs=148.2
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh-hhhHhhhcCCcE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR-AVTSAYYRGALG 103 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~d~ 103 (203)
....+||+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+. .++..+++.+|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 3457999999999999999999999999888787888888888888899999999999999999988 888999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCC---CCHH
Q 048709 104 AVVVYDITKRQSFDHVARGVEELRAHA-DSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNG---DNVD 179 (203)
Q Consensus 104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~---~~i~ 179 (203)
+++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++..+++.+++...+++++++||++| .|++
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~ 176 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVE 176 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHH
Confidence 999999999999999999999887775 478999999999999877778889999999999999999999999 9999
Q ss_pred HHHHHHHHHHH
Q 048709 180 TAFFRLLQEIY 190 (203)
Q Consensus 180 ~~~~~i~~~~~ 190 (203)
++|++|.+.+.
T Consensus 177 ~l~~~l~~~i~ 187 (189)
T 1z06_A 177 AIFMTLAHKLK 187 (189)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 37
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=2.5e-34 Score=208.95 Aligned_cols=167 Identities=36% Similarity=0.602 Sum_probs=138.9
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (203)
Q Consensus 24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 103 (203)
.....++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++..+|+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 34567999999999999999999999998877777888888888888899999999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC------cccCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 048709 104 AVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV------DMWAVSAEDVVEFAEDQGLFFSEASALNGDN 177 (203)
Q Consensus 104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 177 (203)
+++|+|++++.+++.+..|+..+......+.|+++|+||+|+. ..+.+..++..+++...+++++++||++|.|
T Consensus 104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g 183 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN 183 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence 9999999999999999999988887766789999999999996 3456778889999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 048709 178 VDTAFFRLLQEIY 190 (203)
Q Consensus 178 i~~~~~~i~~~~~ 190 (203)
++++|++|++.+.
T Consensus 184 v~el~~~l~~~i~ 196 (199)
T 2p5s_A 184 IVEAVLHLAREVK 196 (199)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998774
No 38
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=1.7e-33 Score=200.44 Aligned_cols=166 Identities=33% Similarity=0.587 Sum_probs=146.5
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 104 (203)
....++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 35679999999999999999999999988877778888888888888999989999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCcccCCCHHHHHHHHH-HcCCeEEEEecCCCCCHH
Q 048709 105 VVVYDITKRQSFDHVARGVEELRAHAD----SSIRIILIGNKSDLVDMWAVSAEDVVEFAE-DQGLFFSEASALNGDNVD 179 (203)
Q Consensus 105 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~i~ 179 (203)
++|+|++++.++..+..|+..+..... .+.|+++|+||+|+. .+.+..+++.+++. ..+++++++||++|.|++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 162 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVA 162 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence 999999999999999999888876554 678999999999997 44678888999988 667899999999999999
Q ss_pred HHHHHHHHHHHH
Q 048709 180 TAFFRLLQEIYA 191 (203)
Q Consensus 180 ~~~~~i~~~~~~ 191 (203)
++|+++++.+.+
T Consensus 163 ~l~~~l~~~~~~ 174 (177)
T 1wms_A 163 AAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998865
No 39
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=2.3e-34 Score=211.71 Aligned_cols=176 Identities=38% Similarity=0.620 Sum_probs=151.0
Q ss_pred cCCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCE----------EEEEEEEeCCCch
Q 048709 19 KMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSK----------IIKAQIWDTAGQE 88 (203)
Q Consensus 19 ~~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~D~~g~~ 88 (203)
++.....++.+||+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++. .+.+.||||||++
T Consensus 16 ~~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 95 (217)
T 2f7s_A 16 PRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE 95 (217)
T ss_dssp -----CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH
T ss_pred cCcCCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH
Confidence 334444577899999999999999999999998887666677777777777777665 7889999999999
Q ss_pred hhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeE
Q 048709 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFF 167 (203)
Q Consensus 89 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 167 (203)
.+...+..+++.+|++++|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+.+..+++.+++...++++
T Consensus 96 ~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~ 175 (217)
T 2f7s_A 96 RFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPY 175 (217)
T ss_dssp HHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCE
T ss_pred hHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcE
Confidence 9999999999999999999999999999999989887766554 689999999999998877788899999999999999
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHhhc
Q 048709 168 SEASALNGDNVDTAFFRLLQEIYALSK 194 (203)
Q Consensus 168 ~~~sa~~~~~i~~~~~~i~~~~~~~~~ 194 (203)
+++||++|.|++++|++|.+.+.+...
T Consensus 176 ~~~Sa~~g~gi~~l~~~l~~~i~~~~~ 202 (217)
T 2f7s_A 176 FETSAATGQNVEKAVETLLDLIMKRME 202 (217)
T ss_dssp EEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999877433
No 40
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=1.9e-34 Score=205.64 Aligned_cols=168 Identities=32% Similarity=0.498 Sum_probs=147.9
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECC-EEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINS-KIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 104 (203)
...++|+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++ ..+.+.+|||||++.+...+..+++++|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 3569999999999999999999999888766667877788888888876 678999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhcC--CCCc-EEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Q 048709 105 VVVYDITKRQSFDHVARGVEELRAHAD--SSIR-IILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTA 181 (203)
Q Consensus 105 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 181 (203)
++|+|++++.+++.+..|+..+..... ...| +++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 163 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLC 163 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence 999999999999999889888766432 2444 8999999999877778888999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 048709 182 FFRLLQEIYALS 193 (203)
Q Consensus 182 ~~~i~~~~~~~~ 193 (203)
|++|.+.+.+..
T Consensus 164 ~~~l~~~~~~~~ 175 (178)
T 2hxs_A 164 FQKVAAEILGIK 175 (178)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHhhh
Confidence 999999886643
No 41
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=205.09 Aligned_cols=166 Identities=34% Similarity=0.512 Sum_probs=148.9
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
...++|+|+|.+|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..++..+|+++
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 4579999999999999999999999888777766665544 456677888899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709 106 VVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 184 (203)
+|||++++.++..+..|+..+..... .++|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 170 (206)
T 2bov_A 91 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFD 170 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999998887664 68999999999999887778889999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 048709 185 LLQEIYAL 192 (203)
Q Consensus 185 i~~~~~~~ 192 (203)
|++.+...
T Consensus 171 l~~~i~~~ 178 (206)
T 2bov_A 171 LMREIRAR 178 (206)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99998774
No 42
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.4e-33 Score=202.67 Aligned_cols=168 Identities=39% Similarity=0.668 Sum_probs=152.5
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 104 (203)
....++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 91 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV 91 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 34579999999999999999999999998888888888888888888999999999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709 105 VVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF 183 (203)
Q Consensus 105 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 183 (203)
++|+|++++.++..+..|+..+..... .++|+++|+||+|+.. +.+..+++.+++...+++++++||++|.|++++|+
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 170 (195)
T 1x3s_A 92 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFE 170 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence 999999999999999999988877654 6799999999999954 46778889999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 048709 184 RLLQEIYALS 193 (203)
Q Consensus 184 ~i~~~~~~~~ 193 (203)
+|.+.+....
T Consensus 171 ~l~~~~~~~~ 180 (195)
T 1x3s_A 171 ELVEKIIQTP 180 (195)
T ss_dssp HHHHHHHTSG
T ss_pred HHHHHHHhhh
Confidence 9999987643
No 43
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=7.4e-34 Score=204.62 Aligned_cols=164 Identities=27% Similarity=0.399 Sum_probs=141.6
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 104 (203)
....+||+|+|.+|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..+ ..+++.+|++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 45679999999999999999999999988777777776555 455677889999999999999988775 6789999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEec-CCCCCHHH
Q 048709 105 VVVYDITKRQSFDHVARGVEELRAHAD---SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASA-LNGDNVDT 180 (203)
Q Consensus 105 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa-~~~~~i~~ 180 (203)
++|||++++++++.+..|+..+..... .++|+++|+||+|+.+.+.+..+++.+++...++++++||| ++|.|+++
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~ 175 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQH 175 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHH
Confidence 999999999999999999988876542 58999999999999877788899999999999999999999 89999999
Q ss_pred HHHHHHHHHH
Q 048709 181 AFFRLLQEIY 190 (203)
Q Consensus 181 ~~~~i~~~~~ 190 (203)
+|++|++.+.
T Consensus 176 lf~~l~~~i~ 185 (187)
T 3c5c_A 176 VFHEAVREAR 185 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998774
No 44
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=1.3e-33 Score=199.05 Aligned_cols=163 Identities=27% Similarity=0.341 Sum_probs=123.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 107 (203)
.+||+++|.+|+|||||+++|.+....... ++.+..+ ...+.+++..+.+.+||+||++.+..+...++..+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCC-Cccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 589999999999999999999987665433 4444443 45667889999999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709 108 YDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (203)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 186 (203)
||++++++++.+..|+..+..... .++|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|+++.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 999999999999999988877543 7899999999999988778899999999999999999999999999999999999
Q ss_pred HHHHHh
Q 048709 187 QEIYAL 192 (203)
Q Consensus 187 ~~~~~~ 192 (203)
+.+...
T Consensus 160 ~~~~~~ 165 (166)
T 3q72_A 160 RQIRLR 165 (166)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 987653
No 45
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=3e-33 Score=200.96 Aligned_cols=164 Identities=19% Similarity=0.303 Sum_probs=142.9
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (203)
Q Consensus 24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 103 (203)
.....+||+|+|.+|||||||+++|+++.+...+.++ . ......+.+++..+.+.+|||+|++.+. +++++|+
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~ 88 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-G-GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA 88 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-C-EEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-c-ceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence 3456799999999999999999999999887776665 3 3344777889999999999999988776 7888999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCC--cccCCCHHHHHHHHHHcC-CeEEEEecCCCCCHH
Q 048709 104 AVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLV--DMWAVSAEDVVEFAEDQG-LFFSEASALNGDNVD 179 (203)
Q Consensus 104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~ 179 (203)
+++|||++++.+++.+..|+..+..... .++|+++|+||+|+. ..+.+..+++.+++...+ +++++|||++|.|++
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~ 168 (184)
T 3ihw_A 89 VVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVE 168 (184)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHH
Confidence 9999999999999999999999887654 679999999999994 456788899999999987 899999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 048709 180 TAFFRLLQEIYALSK 194 (203)
Q Consensus 180 ~~~~~i~~~~~~~~~ 194 (203)
++|+++++.+...++
T Consensus 169 ~lf~~l~~~i~~~~~ 183 (184)
T 3ihw_A 169 RVFQDVAQKVVALRK 183 (184)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887654
No 46
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.3e-33 Score=205.58 Aligned_cols=168 Identities=42% Similarity=0.734 Sum_probs=151.1
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 104 (203)
....++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++..+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 34579999999999999999999999988878878888888888888999889999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709 105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (203)
Q Consensus 105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 184 (203)
++|+|++++.+++.+..|+..+......+.|+++|+||+|+. .+.+..+++.+++...+++++++||++|.|++++|++
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 175 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT 175 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS-SCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999999999998888776789999999999994 4467788889999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 048709 185 LLQEIYALS 193 (203)
Q Consensus 185 i~~~~~~~~ 193 (203)
|.+.+.+..
T Consensus 176 l~~~~~~~~ 184 (213)
T 3cph_A 176 LAKLIQEKI 184 (213)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887743
No 47
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=2.6e-33 Score=197.47 Aligned_cols=164 Identities=34% Similarity=0.529 Sum_probs=143.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
..++|+++|.+|+|||||+++|.+..+...+.++.+... ...+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 358999999999999999999999888776666665444 3456778888999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709 107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (203)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 185 (203)
|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.+++..+++.+++...+++++++||++|.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 9999999999999999988887765 589999999999998777788899999999999999999999999999999999
Q ss_pred HHHHHH
Q 048709 186 LQEIYA 191 (203)
Q Consensus 186 ~~~~~~ 191 (203)
.+.+.+
T Consensus 162 ~~~i~~ 167 (168)
T 1u8z_A 162 MREIRA 167 (168)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988753
No 48
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=1.2e-33 Score=199.33 Aligned_cols=162 Identities=30% Similarity=0.478 Sum_probs=143.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 107 (203)
.++|+++|.+|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999888777767766544 35566777888999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHc-CCeEEEEecCCCCCHHHHHHHH
Q 048709 108 YDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQ-GLFFSEASALNGDNVDTAFFRL 185 (203)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~~i 185 (203)
+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++.+++... +++++++||++|.|+++++++|
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL 161 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHH
Confidence 999999999999999888877543 68999999999999887778889999999887 7999999999999999999999
Q ss_pred HHHHH
Q 048709 186 LQEIY 190 (203)
Q Consensus 186 ~~~~~ 190 (203)
.+.+.
T Consensus 162 ~~~i~ 166 (167)
T 1c1y_A 162 VRQIN 166 (167)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 98763
No 49
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=1e-33 Score=202.23 Aligned_cols=170 Identities=35% Similarity=0.591 Sum_probs=136.1
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC-CEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN-SKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 103 (203)
....++|+|+|.+|||||||+++|++..+...+.++.+.++....+.++ +..+.+.+|||||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 3467999999999999999999999998887777888888888887776 566789999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCc-ccCCCHHHHHHHHH-HcCCeEEEEecCCCCC
Q 048709 104 AVVVYDITKRQSFDHVARGVEELRAHAD----SSIRIILIGNKSDLVD-MWAVSAEDVVEFAE-DQGLFFSEASALNGDN 177 (203)
Q Consensus 104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~ 177 (203)
+++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.. .+.+..+++.+++. ..+++++++||++|.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN 164 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence 9999999999999999999888876653 6789999999999954 34567888888887 5678999999999999
Q ss_pred HHHHHHHHHHHHHHhhc
Q 048709 178 VDTAFFRLLQEIYALSK 194 (203)
Q Consensus 178 i~~~~~~i~~~~~~~~~ 194 (203)
++++|++|.+.+.+.++
T Consensus 165 i~~l~~~l~~~~~~~~~ 181 (182)
T 1ky3_A 165 VDTAFEEIARSALQQNQ 181 (182)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999876543
No 50
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=2.3e-33 Score=197.58 Aligned_cols=163 Identities=29% Similarity=0.453 Sum_probs=145.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 107 (203)
.++|+++|++|+|||||+++|.++.+...+.++.+. .....+.+++..+.+.+|||||++.+..+...++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcce-eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 589999999999999999999998887766666553 3456677888889999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709 108 YDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (203)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 186 (203)
+|++++.+++.+..|+..+..... .+.|+++|+||+|+...+++..++..+++...+++++++||++|.|+++++++|.
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 161 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHH
Confidence 999999999999999888877654 6899999999999987777888899999999999999999999999999999999
Q ss_pred HHHHH
Q 048709 187 QEIYA 191 (203)
Q Consensus 187 ~~~~~ 191 (203)
+.+.+
T Consensus 162 ~~~~~ 166 (167)
T 1kao_A 162 RQMNY 166 (167)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 88753
No 51
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=4.8e-33 Score=199.59 Aligned_cols=167 Identities=34% Similarity=0.509 Sum_probs=148.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
...++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..++..+|+++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 3569999999999999999999999888777666665444 455677888889999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709 106 VVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 184 (203)
+|||++++.++..+..|+..+..... .++|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 174 (187)
T 2a9k_A 95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFD 174 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 99999999999999999988877765 58999999999999877778889999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 048709 185 LLQEIYALS 193 (203)
Q Consensus 185 i~~~~~~~~ 193 (203)
|.+.+...+
T Consensus 175 l~~~i~~~~ 183 (187)
T 2a9k_A 175 LMREIRARK 183 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999987644
No 52
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=8.8e-33 Score=200.92 Aligned_cols=164 Identities=40% Similarity=0.672 Sum_probs=145.9
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEE-----------------------------
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKI----------------------------- 76 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 76 (203)
...++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 356999999999999999999999999887787888888888877777655
Q ss_pred --------EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcc
Q 048709 77 --------IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148 (203)
Q Consensus 77 --------~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 148 (203)
+.+.+|||||++.+......+++.+|++++|+|++++.++..+..|+..+.... +.|+++|+||+| ...
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D-~~~ 161 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID-KNK 161 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-CC-
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-ccc
Confidence 889999999999999999999999999999999999999999999998887765 389999999999 555
Q ss_pred cCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~ 192 (203)
+.+..+++.+++...+++++++||++|.|++++|++|.+.+.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 162 FQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 57888999999999999999999999999999999999988754
No 53
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.1e-33 Score=202.68 Aligned_cols=166 Identities=31% Similarity=0.478 Sum_probs=146.5
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
...++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++. ...+..++..+|+++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 4579999999999999999999999988777777766544 45567788899999999999887 677888999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCC-CHHHHHH
Q 048709 106 VVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGD-NVDTAFF 183 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~-~i~~~~~ 183 (203)
+|||++++++++.+..|+..+..... .++|+++|+||+|+...+.+..+++.+++...+++++++||++|. |++++|+
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~ 183 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFY 183 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHH
Confidence 99999999999999999888877654 689999999999998777788899999999999999999999999 9999999
Q ss_pred HHHHHHHHhh
Q 048709 184 RLLQEIYALS 193 (203)
Q Consensus 184 ~i~~~~~~~~ 193 (203)
+|++.+.+..
T Consensus 184 ~l~~~i~~~~ 193 (196)
T 2atv_A 184 ELCREVRRRR 193 (196)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 9999987643
No 54
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=9.8e-33 Score=198.42 Aligned_cols=167 Identities=31% Similarity=0.507 Sum_probs=144.9
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
...++|+|+|.+|||||||+++|.+..+...+.++. .+.....+.+++..+.+.+|||||++.+..++..++..+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTC-CEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-hheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 357999999999999999999999988877765665 4445566778899999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709 106 VVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 184 (203)
+|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.. .....+++..++...+++++++||++|.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999988877554 6899999999999974 467788899999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q 048709 185 LLQEIYALSK 194 (203)
Q Consensus 185 i~~~~~~~~~ 194 (203)
|.+.+.....
T Consensus 160 l~~~~~~~~~ 169 (189)
T 4dsu_A 160 LVREIRKHKE 169 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhh
Confidence 9999877543
No 55
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=2.8e-34 Score=209.54 Aligned_cols=171 Identities=30% Similarity=0.465 Sum_probs=115.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcC--CCccCCCCCcceeeEEEEEEECCE--EEEEEEEeCCCchhhhhhhHhhhcCC
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKN--EFCFDSKSTIGVEFQTRTVTINSK--IIKAQIWDTAGQERYRAVTSAYYRGA 101 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~D~~g~~~~~~~~~~~~~~~ 101 (203)
...++|+|+|.+|+|||||+++|.+. .+...+.++.+.++....+.+++. .+.+.+|||||++.+...+..+++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46799999999999999999999998 666666677777777778888876 78999999999999999999999999
Q ss_pred cEEEEEEeCCCHHHHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCc-ccCCCHHHHHHHHHHcCCeEEEEecCC-CC
Q 048709 102 LGAVVVYDITKRQSFDHVARGVEELRAHAD---SSIRIILIGNKSDLVD-MWAVSAEDVVEFAEDQGLFFSEASALN-GD 176 (203)
Q Consensus 102 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~sa~~-~~ 176 (203)
|++++|+|++++.+++.+..|+..+..... .++|+++|+||+|+.+ .+.+..+++.+++...+++++++||++ |.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999999888766 6899999999999987 677888999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHhhccc
Q 048709 177 NVDTAFFRLLQEIYALSKKE 196 (203)
Q Consensus 177 ~i~~~~~~i~~~~~~~~~~~ 196 (203)
|++++|++|.+.+.+...+.
T Consensus 178 gi~~l~~~i~~~~~~~~~~~ 197 (208)
T 2yc2_C 178 DADAPFLSIATTFYRNYEDK 197 (208)
T ss_dssp --CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhh
Confidence 99999999999887755443
No 56
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=1.3e-33 Score=207.48 Aligned_cols=169 Identities=22% Similarity=0.353 Sum_probs=144.7
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (203)
Q Consensus 24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 103 (203)
.....+||+|+|.+|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|+
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 345679999999999999999999999998888778877665 4556677788899999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHH-HHHHHHHHHhhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHHcCC-eEEE
Q 048709 104 AVVVYDITKRQSFDH-VARGVEELRAHADSSIRIILIGNKSDLVDM------------WAVSAEDVVEFAEDQGL-FFSE 169 (203)
Q Consensus 104 ~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~ 169 (203)
+++|||++++++++. +..|+..+.... .+.|+++|+||+|+.+. +.+..+++.+++...++ ++++
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 180 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLE 180 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEE
Confidence 999999999999999 688988887765 68999999999999763 56889999999999999 9999
Q ss_pred EecCCCCC-HHHHHHHHHHHHHHhhc
Q 048709 170 ASALNGDN-VDTAFFRLLQEIYALSK 194 (203)
Q Consensus 170 ~sa~~~~~-i~~~~~~i~~~~~~~~~ 194 (203)
|||++|.| ++++|+++++.+.....
T Consensus 181 ~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 181 GSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp CCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred eccCCCcccHHHHHHHHHHHHhccCc
Confidence 99999998 99999999998876544
No 57
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=4.3e-33 Score=203.28 Aligned_cols=168 Identities=30% Similarity=0.563 Sum_probs=148.9
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 104 (203)
....++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 34679999999999999999999999998888888888888888888888888999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCcccCCCHHHHHHHHH-HcCCeEEEEecCCCCCHH
Q 048709 105 VVVYDITKRQSFDHVARGVEELRAHAD----SSIRIILIGNKSDLVDMWAVSAEDVVEFAE-DQGLFFSEASALNGDNVD 179 (203)
Q Consensus 105 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~i~ 179 (203)
++|+|++++.++..+..|+..+..... .+.|+++|+||+|+. .+.+..+++..++. ..+++++++||++|.|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 163 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 163 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence 999999999999999999888776543 478999999999997 34677788888887 678899999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 048709 180 TAFFRLLQEIYALS 193 (203)
Q Consensus 180 ~~~~~i~~~~~~~~ 193 (203)
++|++|.+.+.+..
T Consensus 164 ~l~~~l~~~~~~~~ 177 (207)
T 1vg8_A 164 QAFQTIARNALKQE 177 (207)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987754
No 58
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=9.9e-33 Score=199.65 Aligned_cols=167 Identities=25% Similarity=0.392 Sum_probs=146.4
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 104 (203)
....+||+++|.+|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 98 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence 456799999999999999999999999987777777766554 4567888999999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCcc--cCCCHHHHHHHHHHcCCe-EEEEecCCCCCHHH
Q 048709 105 VVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVDM--WAVSAEDVVEFAEDQGLF-FSEASALNGDNVDT 180 (203)
Q Consensus 105 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~ 180 (203)
++|+|++++.+++.+ ..|+..+... ..+.|+++|+||+|+.+. +.+..+++.+++...+++ ++++||++|.|+++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 177 (194)
T 3reg_A 99 LLCFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNE 177 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH-CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHH
Confidence 999999999999997 6677776654 367999999999999753 568889999999999998 99999999999999
Q ss_pred HHHHHHHHHHHhh
Q 048709 181 AFFRLLQEIYALS 193 (203)
Q Consensus 181 ~~~~i~~~~~~~~ 193 (203)
+|+++++.+....
T Consensus 178 l~~~l~~~i~~~~ 190 (194)
T 3reg_A 178 VFEKSVDCIFSNK 190 (194)
T ss_dssp HHHHHHHHHHCSC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999887643
No 59
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=8.4e-33 Score=201.01 Aligned_cols=170 Identities=26% Similarity=0.386 Sum_probs=138.6
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (203)
Q Consensus 24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 103 (203)
.....++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..++.++|+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 345679999999999999999999999887766666665443 4566778888999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCc------------ccCCCHHHHHHHHHHcCC-eEEE
Q 048709 104 AVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD------------MWAVSAEDVVEFAEDQGL-FFSE 169 (203)
Q Consensus 104 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~ 169 (203)
+++|||++++.++..+. .|+..+.... .++|+++|+||+|+.. .+.+..+++..++...+. ++++
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE 173 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence 99999999999999986 7888777654 4899999999999975 246778889999998887 9999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHhhcc
Q 048709 170 ASALNGDNVDTAFFRLLQEIYALSKK 195 (203)
Q Consensus 170 ~sa~~~~~i~~~~~~i~~~~~~~~~~ 195 (203)
|||++|.|++++|+++++.+.....+
T Consensus 174 ~Sa~~g~gi~~l~~~l~~~~~~~~~~ 199 (201)
T 2q3h_A 174 CSALTQKNLKEVFDAAIVAGIQYSDT 199 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred EecCCCCCHHHHHHHHHHHHhccccc
Confidence 99999999999999999999876543
No 60
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.7e-33 Score=199.63 Aligned_cols=166 Identities=28% Similarity=0.400 Sum_probs=144.4
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (203)
Q Consensus 24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 103 (203)
.....++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 92 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV 92 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCE
Confidence 345679999999999999999999999888777767765554 4556678888899999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHHcCC-eEEE
Q 048709 104 AVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDM------------WAVSAEDVVEFAEDQGL-FFSE 169 (203)
Q Consensus 104 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~ 169 (203)
+++|||++++.++..+. .|+..+.... .++|+++|+||+|+.+. +.+..+++.+++...++ ++++
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 171 (194)
T 2atx_A 93 FLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVE 171 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEE
Confidence 99999999999999987 7888877654 48899999999999753 35778899999999887 8999
Q ss_pred EecCCCCCHHHHHHHHHHHHHH
Q 048709 170 ASALNGDNVDTAFFRLLQEIYA 191 (203)
Q Consensus 170 ~sa~~~~~i~~~~~~i~~~~~~ 191 (203)
|||++|.|++++|++|.+.+..
T Consensus 172 ~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 172 CSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHC
T ss_pred eeCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999988753
No 61
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.4e-32 Score=201.25 Aligned_cols=168 Identities=26% Similarity=0.299 Sum_probs=140.8
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCC--ccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh-hhhhhHhhhcCC
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEF--CFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER-YRAVTSAYYRGA 101 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~ 101 (203)
....+||+|+|.+|+|||||+++|++... ...+ ++.+.++....+.+++..+.+.+|||+|... +..+...+++.+
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 34579999999999999999999997543 2333 4566677777788899999999999999876 556677788999
Q ss_pred cEEEEEEeCCCHHHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 048709 102 LGAVVVYDITKRQSFDHVARGVEELRAHA-DSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDT 180 (203)
Q Consensus 102 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 180 (203)
|++++|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..++...++...++++++|||++|.||++
T Consensus 113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~e 192 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKE 192 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999999999988776543 25799999999999987677888888888889999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 048709 181 AFFRLLQEIYALS 193 (203)
Q Consensus 181 ~~~~i~~~~~~~~ 193 (203)
+|+++++.+....
T Consensus 193 lf~~l~~~i~~~~ 205 (211)
T 2g3y_A 193 LFEGIVRQVRLRR 205 (211)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999886543
No 62
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=1.1e-32 Score=196.60 Aligned_cols=163 Identities=20% Similarity=0.310 Sum_probs=137.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
..+||+++|.+|||||||+++|.+..+.. +.++.+. .....+.+++..+.+.+|||||++. ..+++++|++++
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESE-QYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSS-EEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcce-eEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 56999999999999999999999988876 5566654 3456677889999999999999876 457888999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCC--cccCCCHHHHHHHHHHc-CCeEEEEecCCCCCHHH
Q 048709 107 VYDITKRQSFDHVARGVEELRAHA---DSSIRIILIGNKSDLV--DMWAVSAEDVVEFAEDQ-GLFFSEASALNGDNVDT 180 (203)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~ 180 (203)
|||++++++++.+..|+..+.... ..++|+++|+||+|+. ..+.+..+++.+++... +++++++||++|.|+++
T Consensus 79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 158 (178)
T 2iwr_A 79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDR 158 (178)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHH
Confidence 999999999999998766554443 3689999999999994 44568888999998876 68999999999999999
Q ss_pred HHHHHHHHHHHhhccc
Q 048709 181 AFFRLLQEIYALSKKE 196 (203)
Q Consensus 181 ~~~~i~~~~~~~~~~~ 196 (203)
+|+++.+.+....+..
T Consensus 159 lf~~l~~~~~~~~~~~ 174 (178)
T 2iwr_A 159 VFQEVAQKVVTLRKQQ 174 (178)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999998765543
No 63
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=2.6e-32 Score=196.73 Aligned_cols=169 Identities=32% Similarity=0.499 Sum_probs=135.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
..++|+++|.+|||||||+++|.+..+...+.++.+.. ....+.+++..+.+.+|||||++.+...+..++..+|++++
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 98 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceE-EEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence 56999999999999999999999988776665655443 34566778888999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709 107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (203)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 185 (203)
|+|++++.++..+..|+..+..... .+.|+++|+||+|+.. +....+++.+++...+++++++||++|.|+++++++|
T Consensus 99 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 177 (190)
T 3con_A 99 VFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTL 177 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999888877654 5799999999999976 4677889999999999999999999999999999999
Q ss_pred HHHHHHhhcccc
Q 048709 186 LQEIYALSKKEL 197 (203)
Q Consensus 186 ~~~~~~~~~~~~ 197 (203)
.+.+...+.+++
T Consensus 178 ~~~~~~~~~~~l 189 (190)
T 3con_A 178 VREIRQYRMKKL 189 (190)
T ss_dssp HHHHHHHC----
T ss_pred HHHHHHHHHhhc
Confidence 999987666543
No 64
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=6.6e-32 Score=196.49 Aligned_cols=164 Identities=25% Similarity=0.371 Sum_probs=143.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
...+||+|+|.+|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+..++..+++++|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 46799999999999999999999999887777777766654 34677888899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHHcCC-eEEEEe
Q 048709 106 VVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVDM------------WAVSAEDVVEFAEDQGL-FFSEAS 171 (203)
Q Consensus 106 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s 171 (203)
+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+... +.+..++..+++...+. +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence 99999999999998 57777766644 57899999999999764 45778889999999888 899999
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q 048709 172 ALNGDNVDTAFFRLLQEIYA 191 (203)
Q Consensus 172 a~~~~~i~~~~~~i~~~~~~ 191 (203)
|++|.|++++|++|.+.+.+
T Consensus 181 A~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 181 AKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999988754
No 65
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=2.5e-32 Score=195.78 Aligned_cols=164 Identities=29% Similarity=0.449 Sum_probs=142.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
..++|+++|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+......+++.+|++++
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 569999999999999999999999888777666665443 4556778899999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHHcCC-eEEEEec
Q 048709 107 VYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDM------------WAVSAEDVVEFAEDQGL-FFSEASA 172 (203)
Q Consensus 107 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa 172 (203)
|+|++++.++..+. .|+..+.... .+.|+++|+||+|+... +.+..++..+++...+. +++++||
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence 99999999999987 6877777654 48899999999998653 45778888899999987 9999999
Q ss_pred CCCCCHHHHHHHHHHHHHHh
Q 048709 173 LNGDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 173 ~~~~~i~~~~~~i~~~~~~~ 192 (203)
++|.|++++|+++.+.+.+.
T Consensus 162 ~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 162 LTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp TTCTTHHHHHHHHHHHHSCC
T ss_pred CCccCHHHHHHHHHHHHhcc
Confidence 99999999999999988653
No 66
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=1.8e-32 Score=201.43 Aligned_cols=167 Identities=28% Similarity=0.389 Sum_probs=124.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
...++|+|+|.+|+|||||+++|++..+...+.++.+.. ....+.+++..+.+.+|||||++.+..++..++.++|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFER-YMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEE-EEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccee-EEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 457999999999999999999999988876666665443 3455678888999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHHcCC-eEEEEe
Q 048709 106 VVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDM------------WAVSAEDVVEFAEDQGL-FFSEAS 171 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s 171 (203)
+|||++++.+++.+. .|+..+.... .++|+++|+||+|+... +.+..+++.+++...++ ++++||
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 999999999999986 6887776654 67899999999999764 25777888999999997 999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHhhc
Q 048709 172 ALNGDNVDTAFFRLLQEIYALSK 194 (203)
Q Consensus 172 a~~~~~i~~~~~~i~~~~~~~~~ 194 (203)
|++|.|++++|++|++.+.+...
T Consensus 190 A~~g~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC--
T ss_pred CCCCCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999886544
No 67
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=1.4e-32 Score=200.71 Aligned_cols=166 Identities=27% Similarity=0.424 Sum_probs=142.3
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (203)
Q Consensus 24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 103 (203)
.....+||+|+|.+|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.|..+...+++++|+
T Consensus 24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 102 (205)
T 1gwn_A 24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 102 (205)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCE
Confidence 345679999999999999999999999988777777776554 4456677888899999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHHcC-CeEEE
Q 048709 104 AVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVDM------------WAVSAEDVVEFAEDQG-LFFSE 169 (203)
Q Consensus 104 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~ 169 (203)
+++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+. +.+..+++.+++...+ +++++
T Consensus 103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 181 (205)
T 1gwn_A 103 VLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE 181 (205)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEE
Confidence 9999999999999998 68888776654 57999999999999742 4578888999998887 69999
Q ss_pred EecC-CCCCHHHHHHHHHHHHHH
Q 048709 170 ASAL-NGDNVDTAFFRLLQEIYA 191 (203)
Q Consensus 170 ~sa~-~~~~i~~~~~~i~~~~~~ 191 (203)
|||+ +|.|++++|+.+++.+..
T Consensus 182 ~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 182 CSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp CCTTTCHHHHHHHHHHHHHHHHH
T ss_pred eeeccCCcCHHHHHHHHHHHHhh
Confidence 9999 689999999999988764
No 68
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.2e-32 Score=193.56 Aligned_cols=163 Identities=28% Similarity=0.362 Sum_probs=141.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
..++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||.+.+......++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 468999999999999999999999887766666665443 3445678888899999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709 107 VYDITKRQSFDHVARGVEELRAHAD--SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (203)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 184 (203)
|+|++++.+++.+..|+..+..... .+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 9999999999998888887776543 57899999999999877778888889999999999999999999999999999
Q ss_pred HHHHHH
Q 048709 185 LLQEIY 190 (203)
Q Consensus 185 i~~~~~ 190 (203)
|.+.+.
T Consensus 161 l~~~~~ 166 (172)
T 2erx_A 161 LLNLEK 166 (172)
T ss_dssp HHHTCC
T ss_pred HHHHHh
Confidence 987553
No 69
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=1.6e-32 Score=196.97 Aligned_cols=164 Identities=27% Similarity=0.431 Sum_probs=141.8
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
...+||+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..+...+++.+|+++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 4579999999999999999999999988777767776554 345667888889999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHHcC-CeEEEEe
Q 048709 106 VVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVDM------------WAVSAEDVVEFAEDQG-LFFSEAS 171 (203)
Q Consensus 106 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s 171 (203)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+. +.+..+++.+++...+ +++++||
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 162 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 162 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECB
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEee
Confidence 99999999999998 67887776654 57999999999999742 4678888999998887 7999999
Q ss_pred cC-CCCCHHHHHHHHHHHHHH
Q 048709 172 AL-NGDNVDTAFFRLLQEIYA 191 (203)
Q Consensus 172 a~-~~~~i~~~~~~i~~~~~~ 191 (203)
|+ ++.|++++|+.+++.+..
T Consensus 163 a~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 163 ALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TTTBHHHHHHHHHHHHHHHHT
T ss_pred ecCCCcCHHHHHHHHHHHHhc
Confidence 99 689999999999988763
No 70
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=1.1e-31 Score=188.62 Aligned_cols=161 Identities=32% Similarity=0.531 Sum_probs=141.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV 107 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 107 (203)
.++|+++|.+|+|||||+++|.+..+...+.++.+.. ....+..++..+.+.+|||||.+.+...+..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 4899999999999999999999988776665665433 345667788889999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709 108 YDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186 (203)
Q Consensus 108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 186 (203)
+|++++.++..+..|+..+..... .+.|+++|+||+|+.. +....+++.+++...+++++++||++|.|+++++++|.
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999888877654 5799999999999976 46778889999999999999999999999999999999
Q ss_pred HHHH
Q 048709 187 QEIY 190 (203)
Q Consensus 187 ~~~~ 190 (203)
+.+.
T Consensus 161 ~~~~ 164 (166)
T 2ce2_X 161 REIR 164 (166)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 71
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=8e-33 Score=202.79 Aligned_cols=169 Identities=30% Similarity=0.485 Sum_probs=142.0
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
...++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|+++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 3569999999999999999999999888777767766544 455667888889999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCcccC--------CCHHHHHHHHHHcCC-eEEEEecCCC
Q 048709 106 VVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDMWA--------VSAEDVVEFAEDQGL-FFSEASALNG 175 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~sa~~~ 175 (203)
+|||++++.+++.+. .|+..+.... ++.|+++|+||+|+.+.+. +..+++.+++...+. +++++||++|
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g 164 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ 164 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence 999999999999986 7888877654 4899999999999876432 367888899998886 9999999999
Q ss_pred CCHHHHHHHHHHHHHHhhccc
Q 048709 176 DNVDTAFFRLLQEIYALSKKE 196 (203)
Q Consensus 176 ~~i~~~~~~i~~~~~~~~~~~ 196 (203)
.|++++|+++++.+....++.
T Consensus 165 ~gi~~l~~~l~~~~~~~~~~~ 185 (212)
T 2j0v_A 165 QNVKAVFDTAIKVVLQPPRRK 185 (212)
T ss_dssp TTHHHHHHHHHHHHHCC----
T ss_pred CCHHHHHHHHHHHHhhhhhhc
Confidence 999999999999998765443
No 72
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=8e-33 Score=203.60 Aligned_cols=170 Identities=28% Similarity=0.457 Sum_probs=146.5
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC-CEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN-SKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 103 (203)
....+||+|+|.+|||||||+++|++..+...+.++.+........... +..+.+.+|||||++.+......++..+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 3467999999999999999999999988876666777776666665543 444789999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709 104 AVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF 183 (203)
Q Consensus 104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 183 (203)
+++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 167 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFL 167 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Confidence 99999999999999999999999888777899999999999988767888889999999999999999999999999999
Q ss_pred HHHHHHHHhhc
Q 048709 184 RLLQEIYALSK 194 (203)
Q Consensus 184 ~i~~~~~~~~~ 194 (203)
+|.+.+.....
T Consensus 168 ~l~~~~~~~~~ 178 (218)
T 4djt_A 168 HLARIFTGRPD 178 (218)
T ss_dssp HHHHHHHCCTT
T ss_pred HHHHHHhcccc
Confidence 99999877544
No 73
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.2e-35 Score=213.05 Aligned_cols=169 Identities=45% Similarity=0.746 Sum_probs=142.8
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 048709 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGAL 102 (203)
Q Consensus 23 ~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 102 (203)
...+..+||+|+|.+|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 28 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 107 (199)
T 3l0i_B 28 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 107 (199)
T ss_dssp CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCS
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCC
Confidence 34467899999999999999999999998887777778888888888889999999999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 048709 103 GAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF 182 (203)
Q Consensus 103 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 182 (203)
++++|+|++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|
T Consensus 108 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~ 187 (199)
T 3l0i_B 108 GIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 187 (199)
T ss_dssp EEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 99999999999999999999999887776789999999999998776777778888999999999999999999999999
Q ss_pred HHHHHHHHH
Q 048709 183 FRLLQEIYA 191 (203)
Q Consensus 183 ~~i~~~~~~ 191 (203)
++|.+.+.+
T Consensus 188 ~~l~~~l~~ 196 (199)
T 3l0i_B 188 MTMAAEIKK 196 (199)
T ss_dssp HHHTTTTTT
T ss_pred HHHHHHHHH
Confidence 999876643
No 74
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.7e-31 Score=195.13 Aligned_cols=165 Identities=25% Similarity=0.355 Sum_probs=137.9
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
...+||+|+|.+|||||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+......++.++|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 35789999999999999999999999887777666665544 34677888899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHHcCC-eEEEEe
Q 048709 106 VVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVDM------------WAVSAEDVVEFAEDQGL-FFSEAS 171 (203)
Q Consensus 106 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s 171 (203)
+|+|++++.++..+ ..|+..+.... .+.|+++|+||+|+... +.+..++..+++...+. +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999998 67777766643 57899999999999764 35778888899988887 899999
Q ss_pred cCCCCCHHHHHHHHHHHHHHh
Q 048709 172 ALNGDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 172 a~~~~~i~~~~~~i~~~~~~~ 192 (203)
|++|.|++++|++|.+.+...
T Consensus 181 A~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988753
No 75
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.2e-32 Score=195.28 Aligned_cols=165 Identities=25% Similarity=0.337 Sum_probs=142.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
...++|+|+|.+|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|+++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 3569999999999999999999999888766666665443 345567888899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709 106 VVYDITKRQSFDHVARGVEELRAHAD--SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF 183 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 183 (203)
+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. +.+..++...++...+++++++||++|.|++++|+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQ 163 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Confidence 99999999999998888877766543 4789999999999975 46778888999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 048709 184 RLLQEIYAL 192 (203)
Q Consensus 184 ~i~~~~~~~ 192 (203)
+|++.+...
T Consensus 164 ~l~~~~~~~ 172 (199)
T 2gf0_A 164 ELLTLETRR 172 (199)
T ss_dssp HHHHHCSSS
T ss_pred HHHHHHhhh
Confidence 999877554
No 76
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=1.4e-32 Score=198.86 Aligned_cols=168 Identities=22% Similarity=0.242 Sum_probs=136.9
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccC----------CCCCcceeeEEEEE-EECCEEEEEEEEeCCCchhhhh
Q 048709 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFD----------SKSTIGVEFQTRTV-TINSKIIKAQIWDTAGQERYRA 92 (203)
Q Consensus 24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~-~~~~~~~~~~l~D~~g~~~~~~ 92 (203)
.....+||+|+|.+|||||||++.+.+...... ..++.+.++....+ .+++..+.+.+|||||++.+..
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 345789999999999999999987766443221 12333333333333 4567788999999999999999
Q ss_pred hhHhhhcCCcEEEEEEeCC------CHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC-
Q 048709 93 VTSAYYRGALGAVVVYDIT------KRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL- 165 (203)
Q Consensus 93 ~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~- 165 (203)
.+..+++++|++++|||++ +.+++..+..|+..+. ....++|+++|+||+|+.+ .+..+++.+++...++
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~ 166 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGKF 166 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTT--CCCHHHHHHHHCTTCCS
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhccc--ccCHHHHHHHHHhcCCc
Confidence 9999999999999999999 5677777878877762 3337899999999999977 5788999999999999
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHhhc
Q 048709 166 FFSEASALNGDNVDTAFFRLLQEIYALSK 194 (203)
Q Consensus 166 ~~~~~sa~~~~~i~~~~~~i~~~~~~~~~ 194 (203)
+++++||++|.|++++|++|.+.+.+..+
T Consensus 167 ~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 167 PVLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp CEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred eEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999987654
No 77
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=100.00 E-value=3e-31 Score=191.82 Aligned_cols=167 Identities=26% Similarity=0.316 Sum_probs=137.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCC--CccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh-hhhhhHhhhcCCc
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNE--FCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER-YRAVTSAYYRGAL 102 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~d 102 (203)
...+||+++|.+|+|||||+++|++.. +...+ ++.+.++....+.+++..+.+.+|||+|... +..+...+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 346999999999999999999999643 23333 4456677777788899999999999999776 4556778889999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Q 048709 103 GAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTA 181 (203)
Q Consensus 103 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 181 (203)
++++|||++++++|+.+..|+..+..... .++|+++|+||+|+...+.+..++...++...++++++|||++|.|++++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 99999999999999999999887776533 67999999999999876678888888888888999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 048709 182 FFRLLQEIYALS 193 (203)
Q Consensus 182 ~~~i~~~~~~~~ 193 (203)
|+++++.+....
T Consensus 163 f~~l~~~~~~~~ 174 (192)
T 2cjw_A 163 FEGIVRQVRLRR 174 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999886543
No 78
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=5.2e-32 Score=197.52 Aligned_cols=162 Identities=28% Similarity=0.432 Sum_probs=137.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
...+||+++|.+|+|||||+++|++..+...+.++.+ +.....+.+++..+.+.+|||||++.+......+++++|+++
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 4579999999999999999999999888777666654 444556677888889999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCccc------------CCCHHHHHHHHHHcCC-eEEEEe
Q 048709 106 VVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDMW------------AVSAEDVVEFAEDQGL-FFSEAS 171 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~s 171 (203)
+|||++++.+++.+. .|+..+.... .++|+++|+||+|+.... .+..++...++...++ +++++|
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 185 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence 999999999999996 7877777665 689999999999987642 2778888899999886 599999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 048709 172 ALNGDNVDTAFFRLLQEI 189 (203)
Q Consensus 172 a~~~~~i~~~~~~i~~~~ 189 (203)
|++|.|++++|+++++.+
T Consensus 186 A~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTTCTTHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998754
No 79
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=1.3e-32 Score=202.90 Aligned_cols=170 Identities=29% Similarity=0.478 Sum_probs=148.5
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCC
Q 048709 22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGA 101 (203)
Q Consensus 22 ~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 101 (203)
.......+||+|+|.+|||||||+++|+.+.+...+.++.+.+.......+++..+.+.+|||||++.+..++..+++++
T Consensus 9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (221)
T 3gj0_A 9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA 88 (221)
T ss_dssp TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence 34455679999999999999999999777766666668888888888888899999999999999999999999999999
Q ss_pred cEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Q 048709 102 LGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTA 181 (203)
Q Consensus 102 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 181 (203)
|++++|||++++.++..+..|+..+.... .++|+++|+||+|+.+.. . ..+...++...++++++|||++|.|++++
T Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 165 (221)
T 3gj0_A 89 QCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRK-V-KAKSIVFHRKKNLQYYDISAKSNYNFEKP 165 (221)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCS-S-CGGGCCHHHHHTCEEEECBGGGTBTTTHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCcccccc-c-cHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999888765 578999999999997643 2 23666788888999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 048709 182 FFRLLQEIYALSK 194 (203)
Q Consensus 182 ~~~i~~~~~~~~~ 194 (203)
|++|.+.+.....
T Consensus 166 ~~~l~~~l~~~~~ 178 (221)
T 3gj0_A 166 FLWLARKLIGDPN 178 (221)
T ss_dssp HHHHHHHHHTCTT
T ss_pred HHHHHHHHHhCcc
Confidence 9999999877543
No 80
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=100.00 E-value=1.3e-30 Score=189.31 Aligned_cols=168 Identities=60% Similarity=0.958 Sum_probs=149.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
+..++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+......++..+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 45799999999999999999999999888777788888888888889999999999999999999888889999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709 106 VVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 185 (203)
+|+|+++..+++.+..|+..+......+.|+++++||+|+.+.+.+..+++..++...++.++++||+++.|++++|++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l 162 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 162 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999988888887766555678999999999998766778888999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 048709 186 LQEIYALS 193 (203)
Q Consensus 186 ~~~~~~~~ 193 (203)
.+.+....
T Consensus 163 ~~~~~~~~ 170 (199)
T 2f9l_A 163 LTEIYRIV 170 (199)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887643
No 81
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=1.4e-32 Score=196.59 Aligned_cols=162 Identities=30% Similarity=0.470 Sum_probs=125.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
..+||+++|.+|+|||||++++.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++++|++++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 4699999999999999999999998877666666554332 233456667888999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCcccC----------CCHHHHHHHHHHcCC-eEEEEecCC
Q 048709 107 VYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDMWA----------VSAEDVVEFAEDQGL-FFSEASALN 174 (203)
Q Consensus 107 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~sa~~ 174 (203)
|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.+. +..+++.+++...+. ++++|||++
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKS 164 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCC
Confidence 99999999999987 6888777654 4899999999999866433 477888899998886 999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 048709 175 GDNVDTAFFRLLQEIY 190 (203)
Q Consensus 175 ~~~i~~~~~~i~~~~~ 190 (203)
|.|++++|+++.+.+.
T Consensus 165 ~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 165 QENVKGVFDAAIRVVL 180 (182)
T ss_dssp CTTHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998764
No 82
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.98 E-value=5.9e-31 Score=190.73 Aligned_cols=168 Identities=20% Similarity=0.316 Sum_probs=130.3
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCcc-CCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcC
Q 048709 22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCF-DSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRG 100 (203)
Q Consensus 22 ~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 100 (203)
+.+.....+|+|+|.+|||||||+++|++..+.. .+.++.+.. ...+.. ..+.+.+|||||++.+..++..++++
T Consensus 11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~ 86 (199)
T 4bas_A 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYN--VETFEK--GRVAFTVFDMGGAKKFRGLWETYYDN 86 (199)
T ss_dssp -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEE--EEEEEE--TTEEEEEEEECCSGGGGGGGGGGCTT
T ss_pred ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccccccccccee--EEEEEe--CCEEEEEEECCCCHhHHHHHHHHHhc
Confidence 3445678999999999999999999999999877 666776633 333333 34678999999999999999999999
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHhhcC--------CCCcEEEEEeCCCCCcccCCCHHHHHHHH------HHcCCe
Q 048709 101 ALGAVVVYDITKRQSFDHVARGVEELRAHAD--------SSIRIILIGNKSDLVDMWAVSAEDVVEFA------EDQGLF 166 (203)
Q Consensus 101 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~------~~~~~~ 166 (203)
+|++|+|+|+++++++..+..|+..+..... .++|+++|+||+|+... ...+++.+.. ...+++
T Consensus 87 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~ 164 (199)
T 4bas_A 87 IDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA--KTAAELVEILDLTTLMGDHPFV 164 (199)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC--CCHHHHHHHHTHHHHHTTSCEE
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC--CCHHHHHHHhcchhhccCCeeE
Confidence 9999999999999999999888888765422 37899999999999774 2333333222 346788
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHhhcc
Q 048709 167 FSEASALNGDNVDTAFFRLLQEIYALSKK 195 (203)
Q Consensus 167 ~~~~sa~~~~~i~~~~~~i~~~~~~~~~~ 195 (203)
+++|||++|.|++++|++|.+.+....++
T Consensus 165 ~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~ 193 (199)
T 4bas_A 165 IFASNGLKGTGVHEGFSWLQETASRQSGK 193 (199)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHHHHHC--
T ss_pred EEEeeCCCccCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999998876543
No 83
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.98 E-value=7.2e-31 Score=189.23 Aligned_cols=162 Identities=24% Similarity=0.390 Sum_probs=131.2
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCC-CccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNE-FCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG 103 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 103 (203)
....++|+|+|.+|+|||||+++|.+.. +...+.++.+ .....+.+++ +.+.+|||||++.+...+..++.++|+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA 93 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 4457999999999999999999999887 4444545544 4555555654 678999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----HcCCeEEEEecCCC
Q 048709 104 AVVVYDITKRQSFDHVARGVEELRAHAD---SSIRIILIGNKSDLVDMWAVSAEDVVEFAE-----DQGLFFSEASALNG 175 (203)
Q Consensus 104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~ 175 (203)
+++|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+ ....+++.+++. ..++++++|||++|
T Consensus 94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (190)
T 2h57_A 94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIKG 171 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCCCC
Confidence 9999999999999999889888776543 5799999999999976 456677776663 23578999999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q 048709 176 DNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 176 ~~i~~~~~~i~~~~~~~ 192 (203)
.|++++|++|.+.+.+.
T Consensus 172 ~gi~~l~~~l~~~i~~~ 188 (190)
T 2h57_A 172 EGLQEGVDWLQDQIQTV 188 (190)
T ss_dssp BTHHHHHHHHHHHC---
T ss_pred cCHHHHHHHHHHHHHHh
Confidence 99999999999877543
No 84
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=2.9e-30 Score=185.31 Aligned_cols=159 Identities=24% Similarity=0.428 Sum_probs=130.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
...++|+++|.+|||||||+++|++.. ...+.++.+ .....+.+++ ..+.+|||||++.+...+..+++++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS--EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 457999999999999999999999888 555556655 3444555554 67899999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Q 048709 106 VVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAE-----DQGLFFSEASALNGDNVD 179 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 179 (203)
+|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+. ...+++.+... ..+++++++||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA--LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC--CCHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 99999999999999888888766533 68999999999999763 34555544432 345689999999999999
Q ss_pred HHHHHHHHHHHH
Q 048709 180 TAFFRLLQEIYA 191 (203)
Q Consensus 180 ~~~~~i~~~~~~ 191 (203)
++++++.+.+.+
T Consensus 169 ~l~~~l~~~i~~ 180 (186)
T 1ksh_A 169 PGIDWLLDDISS 180 (186)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 85
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=1e-29 Score=183.57 Aligned_cols=165 Identities=61% Similarity=0.967 Sum_probs=149.1
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 104 (203)
.+..++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+......++..++++
T Consensus 26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 105 (191)
T 1oix_A 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGA 105 (191)
T ss_dssp CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEE
Confidence 45679999999999999999999999988888888998888888899999999999999999998888888899999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709 105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR 184 (203)
Q Consensus 105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 184 (203)
++|+|+.+..+++.+..|+..+......+.|+++++||+|+.+.+....+++.+++...++.++++|++++.+++++|+.
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~ 185 (191)
T 1oix_A 106 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQT 185 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999988888887776655567899999999999876677888899999999999999999999999999999
Q ss_pred HHHHH
Q 048709 185 LLQEI 189 (203)
Q Consensus 185 i~~~~ 189 (203)
+.+.+
T Consensus 186 l~~~i 190 (191)
T 1oix_A 186 ILTEI 190 (191)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98765
No 86
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=4.7e-31 Score=188.86 Aligned_cols=162 Identities=23% Similarity=0.421 Sum_probs=126.7
Q ss_pred CCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhc
Q 048709 20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYR 99 (203)
Q Consensus 20 ~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~ 99 (203)
..+......++|+|+|.+|+|||||+++|++..+ ..+.++.+... ..+.+++ +.+.+|||||++.+...+..+++
T Consensus 13 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~ 87 (181)
T 2h17_A 13 GLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYT 87 (181)
T ss_dssp --------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGT
T ss_pred CccCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhc
Confidence 3344455679999999999999999999999887 33445555433 4455555 67899999999999999999999
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----HcCCeEEEEecC
Q 048709 100 GALGAVVVYDITKRQSFDHVARGVEELRAHA-DSSIRIILIGNKSDLVDMWAVSAEDVVEFAE-----DQGLFFSEASAL 173 (203)
Q Consensus 100 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~ 173 (203)
++|++++|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+ ....+++.+... ..+++++++||+
T Consensus 88 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~ 165 (181)
T 2h17_A 88 NTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCAL 165 (181)
T ss_dssp TCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT--CCCHHHHHHHTTGGGCCSSCEEEEECBTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc--CCCHHHHHHHhCcccccCCceEEEEccCC
Confidence 9999999999999999999988888876643 36899999999999976 345556655442 235689999999
Q ss_pred CCCCHHHHHHHHHHH
Q 048709 174 NGDNVDTAFFRLLQE 188 (203)
Q Consensus 174 ~~~~i~~~~~~i~~~ 188 (203)
+|.|++++|++|.+.
T Consensus 166 ~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 166 TGEGLCQGLEWMMSR 180 (181)
T ss_dssp TTBTHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHhh
Confidence 999999999998764
No 87
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=7.4e-31 Score=188.97 Aligned_cols=161 Identities=21% Similarity=0.403 Sum_probs=130.0
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA 104 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 104 (203)
....++|+|+|.+|+|||||+++|++..+...+.++.+..+. .+... .+.+.+|||||++.+...+..++.++|++
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAI 94 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence 445799999999999999999999998887666677665543 33333 46789999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----HcCCeEEEEecCCCCCH
Q 048709 105 VVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAE-----DQGLFFSEASALNGDNV 178 (203)
Q Consensus 105 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i 178 (203)
++|+|+++++++..+..|+..+..... .+.|+++|+||+|+.+. ...+++.+... ..++++++|||++|.|+
T Consensus 95 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv 172 (188)
T 1zd9_A 95 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYSISCKEKDNI 172 (188)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHHhChhhhccCCeeEEEEECCCCCCH
Confidence 999999999999999888888766433 68999999999999763 33444433322 23467999999999999
Q ss_pred HHHHHHHHHHHHH
Q 048709 179 DTAFFRLLQEIYA 191 (203)
Q Consensus 179 ~~~~~~i~~~~~~ 191 (203)
+++|++|.+.+..
T Consensus 173 ~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 173 DITLQWLIQHSKS 185 (188)
T ss_dssp HHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHh
Confidence 9999999886543
No 88
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=2.1e-30 Score=187.02 Aligned_cols=155 Identities=21% Similarity=0.261 Sum_probs=128.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
..++|+++|.+|||||||+++|.+..+.. +.++.+. ....+.+++ +.+.+|||||++.+..++..+++.+|++++
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHP--TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSC--EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCC--CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 45899999999999999999999988753 3355444 445666776 778999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHH------------cCCeEEEEecC
Q 048709 107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAED------------QGLFFSEASAL 173 (203)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~sa~ 173 (203)
|+|++++++++.+..|+..+..... .+.|+++|+||+|+.+ .+..+++.+.+.. .++++++|||+
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 174 (190)
T 1m2o_B 97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVV 174 (190)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTT
T ss_pred EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeECC
Confidence 9999999999999999888766433 6899999999999976 5677777776543 34679999999
Q ss_pred CCCCHHHHHHHHHHH
Q 048709 174 NGDNVDTAFFRLLQE 188 (203)
Q Consensus 174 ~~~~i~~~~~~i~~~ 188 (203)
+|.|++++|++|.+.
T Consensus 175 ~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 175 MRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTBSHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhh
Confidence 999999999998764
No 89
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.4e-30 Score=187.19 Aligned_cols=161 Identities=24% Similarity=0.442 Sum_probs=127.5
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
...++|+|+|.+|||||||+++|.++.+. .+.+|.+. ....+.+++ +.+.+|||||++.+...+..+++++|+++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGS--NVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCS--SCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCcc--ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999988776 44455543 334455555 67899999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Q 048709 106 VVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAE-----DQGLFFSEASALNGDNVD 179 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 179 (203)
+|+|++++++++.+..|+..+..... .+.|+++|+||+|+.+ ....+++.+... ..+++++++||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC--CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 99999999999999999888876532 6899999999999976 445566655543 245689999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 048709 180 TAFFRLLQEIYALS 193 (203)
Q Consensus 180 ~~~~~i~~~~~~~~ 193 (203)
+++++|++.+....
T Consensus 167 ~l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 167 QGLEWMMSRLKIRL 180 (187)
T ss_dssp HHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999875543
No 90
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=9.9e-31 Score=189.90 Aligned_cols=155 Identities=21% Similarity=0.268 Sum_probs=123.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
..++|+++|++|||||||+++|.+..+.. +.+|.+.. ...+.+++ +.+.+|||||++.+..++..+++++|++++
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 45899999999999999999999887643 33555443 34556666 688999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHH-----------------cCCeEE
Q 048709 107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAED-----------------QGLFFS 168 (203)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 168 (203)
|+|+++++++..+..|+..+..... .++|+++|+||+|+.+ .+..+++.+++.. .+++++
T Consensus 99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (198)
T 1f6b_A 99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVF 176 (198)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEEE
Confidence 9999999999999999888876533 6899999999999976 5677888877653 345799
Q ss_pred EEecCCCCCHHHHHHHHHHH
Q 048709 169 EASALNGDNVDTAFFRLLQE 188 (203)
Q Consensus 169 ~~sa~~~~~i~~~~~~i~~~ 188 (203)
+|||++|.|++++|++|.+.
T Consensus 177 ~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 177 MCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp ECBTTTTBSHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 99999999999999999764
No 91
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=1.4e-30 Score=186.52 Aligned_cols=159 Identities=23% Similarity=0.437 Sum_probs=126.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
...++|+++|.+|||||||+++|.+..+.. +.++.+ +....+.+++ +.+.+|||||++.+...+..+++.+|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~-~~~t~g--~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEE-EEEETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCc-ccCcCC--eEEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 456999999999999999999999886533 334544 3344555554 67899999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Q 048709 106 VVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAE-----DQGLFFSEASALNGDNVD 179 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 179 (203)
+|+|+++++++..+..|+..+..... .+.|+++|+||+|+.+. ...+++.+... ..++++++|||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA--APASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccC--CCHHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 99999999999999888887755433 67999999999999763 34444443321 234679999999999999
Q ss_pred HHHHHHHHHHHH
Q 048709 180 TAFFRLLQEIYA 191 (203)
Q Consensus 180 ~~~~~i~~~~~~ 191 (203)
++|+++.+.+.+
T Consensus 167 ~l~~~l~~~~~~ 178 (181)
T 1fzq_A 167 DGMNWVCKNVNA 178 (181)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHHHHh
Confidence 999999987654
No 92
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=6.6e-31 Score=185.96 Aligned_cols=158 Identities=22% Similarity=0.382 Sum_probs=127.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
..++|+++|.+|+|||||+++|.++.+.. +.++.+ .....+.+++ ..+.+|||||++.+...+..+++++|++++
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCc--cceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 45999999999999999999999888753 335544 3445555553 678999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHH-----HHcCCeEEEEecCCCCCHHH
Q 048709 107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFA-----EDQGLFFSEASALNGDNVDT 180 (203)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~ 180 (203)
|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+. ...+++.+.. ...+++++++||++|.|+++
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (171)
T 1upt_A 81 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA--MTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDE 158 (171)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCC--CCHHHHHHHhCchhccCCceEEEECcCCCCcCHHH
Confidence 9999999999999888887766543 68999999999999763 3334443332 23456899999999999999
Q ss_pred HHHHHHHHHHH
Q 048709 181 AFFRLLQEIYA 191 (203)
Q Consensus 181 ~~~~i~~~~~~ 191 (203)
+|+++.+.+.+
T Consensus 159 l~~~l~~~i~~ 169 (171)
T 1upt_A 159 AMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 93
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=3.9e-30 Score=180.89 Aligned_cols=155 Identities=22% Similarity=0.423 Sum_probs=123.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY 108 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 108 (203)
+||+++|.+|+|||||+++|+++.+.. +.+|.+ .....+..+ .+.+.+|||||++.+...+..+++++|++++|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECS--SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEEC--CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999877654 345554 333344443 367899999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHH
Q 048709 109 DITKRQSFDHVARGVEELRAHA-DSSIRIILIGNKSDLVDMWAVSAEDVVEFAE-----DQGLFFSEASALNGDNVDTAF 182 (203)
Q Consensus 109 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~ 182 (203)
|+++++++..+..|+..+.... ..+.|+++|+||+|+.+. ...+++.+... ..++++++|||++|.|++++|
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 9999999999988888876543 268999999999999763 33444433221 234679999999999999999
Q ss_pred HHHHHHHH
Q 048709 183 FRLLQEIY 190 (203)
Q Consensus 183 ~~i~~~~~ 190 (203)
+++.+.+.
T Consensus 154 ~~l~~~i~ 161 (164)
T 1r8s_A 154 DWLSNQLR 161 (164)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHh
Confidence 99998764
No 94
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=6.7e-30 Score=182.84 Aligned_cols=160 Identities=22% Similarity=0.381 Sum_probs=127.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
...++|+++|++|||||||+++|.++.+ ..+.++.+. ....+.+++ ..+.+|||||.+.+...+..++.++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGF--NVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTC--CEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCcc--ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4579999999999999999999998877 344456553 344455554 67899999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHH-----cCCeEEEEecCCCCCHH
Q 048709 106 VVYDITKRQSFDHVARGVEELRAHA-DSSIRIILIGNKSDLVDMWAVSAEDVVEFAED-----QGLFFSEASALNGDNVD 179 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~ 179 (203)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ....+++.+.... .+++++++||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG--ALSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT--CCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCC--CCCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 9999999999999988888877654 37899999999999976 3455566554432 23579999999999999
Q ss_pred HHHHHHHHHHHHh
Q 048709 180 TAFFRLLQEIYAL 192 (203)
Q Consensus 180 ~~~~~i~~~~~~~ 192 (203)
+++++|.+.+.+.
T Consensus 169 ~l~~~l~~~~~~~ 181 (183)
T 1moz_A 169 EGLDWLIDVIKEE 181 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
No 95
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=1.2e-29 Score=183.38 Aligned_cols=158 Identities=20% Similarity=0.407 Sum_probs=121.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
...++|+|+|.+|||||||+++|+++.+.. +.+|.+ +....+..++ +.+.+|||||++.+...+..+++++|+++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 356999999999999999999999887653 334444 3444455544 67899999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Q 048709 106 VVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAE-----DQGLFFSEASALNGDNVD 179 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 179 (203)
+|+|+++++++..+..|+..+..... .+.|+++|+||+|+.+. ...+++.+... ..++++++|||++|.|++
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 179 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY 179 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence 99999999999999888888765433 67999999999999763 33444433222 234579999999999999
Q ss_pred HHHHHHHHHHH
Q 048709 180 TAFFRLLQEIY 190 (203)
Q Consensus 180 ~~~~~i~~~~~ 190 (203)
++|++|++.+.
T Consensus 180 ~l~~~l~~~i~ 190 (192)
T 2b6h_A 180 DGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999998763
No 96
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.97 E-value=1.1e-30 Score=187.48 Aligned_cols=166 Identities=19% Similarity=0.333 Sum_probs=122.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC--CCccCCCCCcceeeEEEEEEE---CCEEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKN--EFCFDSKSTIGVEFQTRTVTI---NSKIIKAQIWDTAGQERYRAVTSAYYRGAL 102 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 102 (203)
.+||+++|++|||||||+++|.+. .+...+.+|.+.++....+.+ ++..+.+.+|||+|++.+..+...++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 489999999999999999999985 444445577777666555443 345678999999999999999999999999
Q ss_pred EEEEEEeCCCH-HHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCC---HHHHHHHHHHcCCe----EEEEecCC
Q 048709 103 GAVVVYDITKR-QSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVS---AEDVVEFAEDQGLF----FSEASALN 174 (203)
Q Consensus 103 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~sa~~ 174 (203)
++++|+|++++ .++..+..|+..+.... .+.|+++|+||+|+.+.+.+. .+....++...+++ ++++||++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE 160 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence 99999999987 57888999988876654 578999999999997643221 22334555556776 99999999
Q ss_pred CC-CHHHHHHHHHHHHHHhhc
Q 048709 175 GD-NVDTAFFRLLQEIYALSK 194 (203)
Q Consensus 175 ~~-~i~~~~~~i~~~~~~~~~ 194 (203)
|. +++++++.|.+.+.....
T Consensus 161 ~~~~~~~l~~~i~~~~~~~~~ 181 (184)
T 2zej_A 161 ESDALAKLRKTIINESLNFKI 181 (184)
T ss_dssp CCHHHHHHHHHHHHHHHCC--
T ss_pred CchhHHHHHHHHHHHHhcccc
Confidence 97 999999999988776443
No 97
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.97 E-value=4.6e-29 Score=194.22 Aligned_cols=164 Identities=29% Similarity=0.432 Sum_probs=142.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
...++|+++|.+|+|||||++++++..+...+.++.+.. ....+.+++..+.+.+|||||++.+......+++.+|+++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEE-EEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccce-eEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 346999999999999999999999988877776666443 3456678889999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHHcCC-eEEEEe
Q 048709 106 VVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDM------------WAVSAEDVVEFAEDQGL-FFSEAS 171 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s 171 (203)
+|||++++.++..+. .|+..+.... .++|+++|+||+|+... +.+..+++.+++...++ ++++||
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 310 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 310 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec
Confidence 999999999999986 6777776654 48999999999998653 46788899999999997 999999
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q 048709 172 ALNGDNVDTAFFRLLQEIYA 191 (203)
Q Consensus 172 a~~~~~i~~~~~~i~~~~~~ 191 (203)
|++|.|++++|++|.+.+..
T Consensus 311 a~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 311 ALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCcCHHHHHHHHHHHHhc
Confidence 99999999999999988764
No 98
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.94 E-value=2.1e-32 Score=199.41 Aligned_cols=162 Identities=29% Similarity=0.451 Sum_probs=135.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
...++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++++|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 4579999999999999999999998887666656554333 444566777788999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCccc------------CCCHHHHHHHHHHcCC-eEEEEe
Q 048709 106 VVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDMW------------AVSAEDVVEFAEDQGL-FFSEAS 171 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~s 171 (203)
+|+|++++.+++.+. .|+..+.... .++|+++|+||+|+.+.. .+..+++.+++...++ +++++|
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS 185 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
Confidence 999999999999886 6777666543 378999999999997542 4556677788888887 899999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 048709 172 ALNGDNVDTAFFRLLQEI 189 (203)
Q Consensus 172 a~~~~~i~~~~~~i~~~~ 189 (203)
|++|.|++++|++|++.+
T Consensus 186 A~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999998765
No 99
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.97 E-value=2.4e-30 Score=186.31 Aligned_cols=160 Identities=21% Similarity=0.347 Sum_probs=128.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
...++|+++|.+|+|||||+++|.++.+.. +.+|.+ .....+..++ ..+.+|||||++.+...+..+++++|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG--VNLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT--CCEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc--eEEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 456999999999999999999999887654 335554 3344455554 67899999999999988899999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHH-----HHcCCeEEEEecCCCCCHH
Q 048709 106 VVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFA-----EDQGLFFSEASALNGDNVD 179 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~ 179 (203)
+|+|+++++++..+..|+..+..... .+.|+++|+||+|+.+. ...+++.+.. ...++++++|||++|.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA--ASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 99999999999998888887766443 68999999999999763 3334443332 2234689999999999999
Q ss_pred HHHHHHHHHHHHh
Q 048709 180 TAFFRLLQEIYAL 192 (203)
Q Consensus 180 ~~~~~i~~~~~~~ 192 (203)
++++++.+.+.+.
T Consensus 173 ~l~~~l~~~i~~~ 185 (189)
T 2x77_A 173 EGMDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
No 100
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=4.6e-30 Score=186.02 Aligned_cols=162 Identities=19% Similarity=0.220 Sum_probs=122.3
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEE--EE-CCEEEEEEEEeCCCchhhhhhh---Hh
Q 048709 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTV--TI-NSKIIKAQIWDTAGQERYRAVT---SA 96 (203)
Q Consensus 23 ~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~l~D~~g~~~~~~~~---~~ 96 (203)
......+||+++|.+|||||||++++.+..... ++.+.++..... .+ ++..+.+.+|||||++.|.... ..
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 91 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEM 91 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGG---GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCc---ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccc
Confidence 445678999999999999999999888753322 333333333222 23 2556789999999999987776 89
Q ss_pred hhcCCcEEEEEEeCCCH--HHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcc-------cCCCHHHHHHHHH----Hc
Q 048709 97 YYRGALGAVVVYDITKR--QSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM-------WAVSAEDVVEFAE----DQ 163 (203)
Q Consensus 97 ~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------~~~~~~~~~~~~~----~~ 163 (203)
+++++|++++|||+++. +++..+..|+..+... ..++|+++|+||+|+.+. +.+..++..+++. ..
T Consensus 92 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 170 (196)
T 3llu_A 92 IFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKL 170 (196)
T ss_dssp HHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred ccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcC
Confidence 99999999999999996 7777777777776433 368999999999998652 3344555667777 67
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHHH
Q 048709 164 GLFFSEASALNGDNVDTAFFRLLQEI 189 (203)
Q Consensus 164 ~~~~~~~sa~~~~~i~~~~~~i~~~~ 189 (203)
++++++|||++ .|++++|+.+++.+
T Consensus 171 ~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 171 HLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp CEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred CcceEEEEech-hhHHHHHHHHHHHh
Confidence 88999999999 99999999998865
No 101
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.96 E-value=3.5e-28 Score=180.10 Aligned_cols=171 Identities=19% Similarity=0.138 Sum_probs=120.6
Q ss_pred CCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCc------hhh---
Q 048709 20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ------ERY--- 90 (203)
Q Consensus 20 ~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~------~~~--- 90 (203)
.+|...+..++|+|+|.+|+|||||+++|++..+.....+..+..........++ ..+.+|||||. +..
T Consensus 21 ~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~ 98 (228)
T 2qu8_A 21 GLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIE 98 (228)
T ss_dssp -CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHH
T ss_pred cCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHH
Confidence 4454446679999999999999999999999887543333333444444444444 57899999998 321
Q ss_pred hhhhHhhhcCCcEEEEEEeCCCHHHHHH--HHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHH---HHHHHHHHcC-
Q 048709 91 RAVTSAYYRGALGAVVVYDITKRQSFDH--VARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAE---DVVEFAEDQG- 164 (203)
Q Consensus 91 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~- 164 (203)
......++..+|++++|+|++++.++.. ...|+..+... ..+.|+++|+||+|+.+.+.+..+ ...+++...+
T Consensus 99 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
T 2qu8_A 99 MTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKN 177 (228)
T ss_dssp HHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCC
Confidence 1123445788999999999999876542 23455544432 247899999999999876566554 4566667776
Q ss_pred -CeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q 048709 165 -LFFSEASALNGDNVDTAFFRLLQEIYALS 193 (203)
Q Consensus 165 -~~~~~~sa~~~~~i~~~~~~i~~~~~~~~ 193 (203)
+++++|||++|.|++++|++|.+.+...+
T Consensus 178 ~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 178 PIKFSSFSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CceEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999887643
No 102
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.96 E-value=2.2e-28 Score=172.52 Aligned_cols=153 Identities=19% Similarity=0.190 Sum_probs=116.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh------hhhHhhhc--
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR------AVTSAYYR-- 99 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~~-- 99 (203)
.++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++ ..+.+|||||+..+. .+...|+.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 48999999999999999999998776555545555565666666665 468999999987664 34456664
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 048709 100 GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVD 179 (203)
Q Consensus 100 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 179 (203)
++|++++|+|+++.+. ...|+..+.. .+.|+++|+||+|+...+.+.. +..+++...+++++++||++|.|++
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~ 153 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE 153 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred CCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence 8999999999998654 3346555544 3789999999999875444432 4667788888999999999999999
Q ss_pred HHHHHHHHHH
Q 048709 180 TAFFRLLQEI 189 (203)
Q Consensus 180 ~~~~~i~~~~ 189 (203)
++|+++.+.+
T Consensus 154 ~l~~~l~~~~ 163 (165)
T 2wji_A 154 ELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 103
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.96 E-value=8.5e-28 Score=176.22 Aligned_cols=158 Identities=20% Similarity=0.178 Sum_probs=114.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCE-EEEEEEEeCCCchhhhh-hhHhhhcCCcE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSK-IIKAQIWDTAGQERYRA-VTSAYYRGALG 103 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~-~~~~~~~~~d~ 103 (203)
...++|+++|.+|+|||||+++|++..+...+. +.+.... .+.+++. .+.+.+|||||++.+.. ++..|++++|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCC-CCSCEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccC-CcceeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 356999999999999999999999988766664 3333333 3555543 57899999999999987 78889999999
Q ss_pred EEEEEeCCCHH-HHHHHHHHHHHHHhh---cCCCCcEEEEEeCCCCCcccCCCHHHHHHHHH------------------
Q 048709 104 AVVVYDITKRQ-SFDHVARGVEELRAH---ADSSIRIILIGNKSDLVDMWAVSAEDVVEFAE------------------ 161 (203)
Q Consensus 104 ~i~v~d~~~~~-s~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------------------ 161 (203)
+++|+|+++.. ++.....++..+... ...++|+++|+||+|+.... ..++..+...
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~s~~~ 159 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK--SAKLIQQQLEKELNTLRVTRSAAPSTLD 159 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC--CHHHHHHHHHHHHHHHHHHCC-------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc--cHHHHHHHHHHHHHHHhccchhcccccc
Confidence 99999999854 455555544443322 23579999999999997642 2222222111
Q ss_pred -------------------Hc--CCeEEEEecCCC------CCHHHHHHHHHHH
Q 048709 162 -------------------DQ--GLFFSEASALNG------DNVDTAFFRLLQE 188 (203)
Q Consensus 162 -------------------~~--~~~~~~~sa~~~------~~i~~~~~~i~~~ 188 (203)
.. .++|++|||++| .|++++|++|.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 160 SSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp -----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred CCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11 567999999999 9999999999875
No 104
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.3e-29 Score=190.83 Aligned_cols=167 Identities=26% Similarity=0.306 Sum_probs=122.9
Q ss_pred CCCCCeeeEEEEEcCC---------CCcHHHHHHHHhc---CCCccCCCCCc-ceeeEEEE--------------EEECC
Q 048709 22 PDKIDYVFKVVVIGDS---------AVGKSQILSRFTK---NEFCFDSKSTI-GVEFQTRT--------------VTINS 74 (203)
Q Consensus 22 ~~~~~~~~~i~vvG~~---------~sGKStli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~ 74 (203)
+......+||+|+|.+ |||||||+++|++ ..+...+.++. +.++.... ..+++
T Consensus 13 ~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (255)
T 3c5h_A 13 NLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC 92 (255)
T ss_dssp TSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC------
T ss_pred CCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCC
Confidence 3345567999999999 9999999999998 45555554543 33322221 12456
Q ss_pred EEEEEEEEe-----------------------CCCchhhhhhhHhhhc---------------------CCcEEEEEEeC
Q 048709 75 KIIKAQIWD-----------------------TAGQERYRAVTSAYYR---------------------GALGAVVVYDI 110 (203)
Q Consensus 75 ~~~~~~l~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~ 110 (203)
..+.+.+|| ++|++.|..++..++. ++|++++|||+
T Consensus 93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~ 172 (255)
T 3c5h_A 93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV 172 (255)
T ss_dssp ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence 778899999 5556666666666666 79999999999
Q ss_pred CCH--HHHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHH-cCCeEEEEecCCCCCHHHHHHHHH
Q 048709 111 TKR--QSFDHVARGVEELRAH-ADSSIRIILIGNKSDLVDMWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAFFRLL 186 (203)
Q Consensus 111 ~~~--~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i~~~~~~i~ 186 (203)
+++ .+++.+..|+..+... ...++|+++|+||+|+...+.+ +++.+++.. .+++++++||++|.|++++|++|+
T Consensus 173 t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~ 250 (255)
T 3c5h_A 173 SRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLV 250 (255)
T ss_dssp BC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHH
Confidence 998 9999999999888765 3367999999999999764333 567777776 488999999999999999999998
Q ss_pred HHHH
Q 048709 187 QEIY 190 (203)
Q Consensus 187 ~~~~ 190 (203)
+.+.
T Consensus 251 ~~l~ 254 (255)
T 3c5h_A 251 QLID 254 (255)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8763
No 105
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.96 E-value=5.5e-28 Score=172.04 Aligned_cols=157 Identities=18% Similarity=0.205 Sum_probs=122.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
...++|+|+|.+|||||||+++|.+..+...+.++.+.+.....+.+++. .+.+|||||++.+..++..++..+|+++
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 45689999999999999999999998887776666666666666777774 4679999999999988888999999999
Q ss_pred EEEeCCC---HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcC---------CeEEEEecC
Q 048709 106 VVYDITK---RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQG---------LFFSEASAL 173 (203)
Q Consensus 106 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~sa~ 173 (203)
+|+|+++ ..+++.+ ..+ ...++|+++|+||+|+... ..+++.......+ ++++++||+
T Consensus 84 ~v~d~~~~~~~~~~~~l----~~~---~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (178)
T 2lkc_A 84 LVVAADDGVMPQTVEAI----NHA---KAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAK 153 (178)
T ss_dssp EEEETTCCCCHHHHHHH----HHH---GGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSS
T ss_pred EEEECCCCCcHHHHHHH----HHH---HhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecC
Confidence 9999988 4444332 222 2257899999999999752 3344444333221 589999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhc
Q 048709 174 NGDNVDTAFFRLLQEIYALSK 194 (203)
Q Consensus 174 ~~~~i~~~~~~i~~~~~~~~~ 194 (203)
+|.|++++|++|.+.+...+.
T Consensus 154 ~~~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 154 TKEGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp SSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHhhhhhcc
Confidence 999999999999988766544
No 106
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.96 E-value=4.9e-28 Score=186.72 Aligned_cols=160 Identities=18% Similarity=0.269 Sum_probs=126.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCc---cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhh-----hhhhHhhh
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFC---FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY-----RAVTSAYY 98 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----~~~~~~~~ 98 (203)
..+||+++|.+|||||||+++|+++... ..+.+|.+. ....+.+++ .+.+.+|||||++.+ ......++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~--~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDV--EHSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSE--EEEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccce--EEEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4689999999999999999999887332 233344443 344445544 578999999999988 67888899
Q ss_pred cCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCc--ccC----CCHHHHHHHHHHcC---CeE
Q 048709 99 RGALGAVVVYDITKRQSFDHVARGVEELRAHA--DSSIRIILIGNKSDLVD--MWA----VSAEDVVEFAEDQG---LFF 167 (203)
Q Consensus 99 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~ 167 (203)
+++|++++|+|++++++++.+..|...+.... .+++|+++|+||+|+.+ .+. +..+++.+++...+ +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999999877755443322 36799999999999976 333 55577888888887 799
Q ss_pred EEEecCCCCCHHHHHHHHHHHHH
Q 048709 168 SEASALNGDNVDTAFFRLLQEIY 190 (203)
Q Consensus 168 ~~~sa~~~~~i~~~~~~i~~~~~ 190 (203)
++|||++ .++.++|..+++.+.
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTTC
T ss_pred EEeeecC-ChHHHHHHHHHHHHc
Confidence 9999999 899999988887553
No 107
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.95 E-value=8.8e-28 Score=173.51 Aligned_cols=159 Identities=20% Similarity=0.181 Sum_probs=110.3
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCC----------chhhhhh
Q 048709 24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG----------QERYRAV 93 (203)
Q Consensus 24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~~ 93 (203)
+....++|+|+|.+|+|||||+++|++..+.....++.+.+........++ .+.+||||| ++.+..+
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence 345679999999999999999999999875544445555444444444444 589999999 7778888
Q ss_pred hHhhhcCC---cEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCH--HHHHH-HHHHcCCeE
Q 048709 94 TSAYYRGA---LGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSA--EDVVE-FAEDQGLFF 167 (203)
Q Consensus 94 ~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~-~~~~~~~~~ 167 (203)
...++..+ |++++|+|++++.++.... ++..+.. .+.|+++|+||+|+...+.... +++.+ +....++++
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL 171 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCce
Confidence 88888777 9999999999876655532 2222222 5789999999999976433221 23333 222346789
Q ss_pred EEEecCCCCCHHHHHHHHHHHH
Q 048709 168 SEASALNGDNVDTAFFRLLQEI 189 (203)
Q Consensus 168 ~~~sa~~~~~i~~~~~~i~~~~ 189 (203)
+++||++|.|+++++++|.+.+
T Consensus 172 ~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 172 ILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEccCCCCHHHHHHHHHHHh
Confidence 9999999999999999998865
No 108
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=2.8e-27 Score=184.04 Aligned_cols=158 Identities=21% Similarity=0.402 Sum_probs=121.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
..++|+|+|.+|+|||||+++|.+..+.... +|.+.. ...+...+ +.+.||||||++.+..+...+++.+|++|+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEE--EEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceE--EEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999988865443 444433 33344444 678999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHH-----cCCeEEEEecCCCCCHHH
Q 048709 107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAED-----QGLFFSEASALNGDNVDT 180 (203)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~ 180 (203)
|||++++.++..+..++..+..... .++|+++|+||+|+.+. ...+++...... .+++++++||++|.|+++
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e 316 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE 316 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcc--cCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence 9999999999999888777655443 68999999999999763 344444443322 345799999999999999
Q ss_pred HHHHHHHHHHH
Q 048709 181 AFFRLLQEIYA 191 (203)
Q Consensus 181 ~~~~i~~~~~~ 191 (203)
+|++|++.+.+
T Consensus 317 l~~~l~~~l~~ 327 (329)
T 3o47_A 317 GLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 99999987753
No 109
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.95 E-value=1e-27 Score=172.37 Aligned_cols=159 Identities=21% Similarity=0.227 Sum_probs=116.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCC-----------chhhhhhhHhh
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG-----------QERYRAVTSAY 97 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g-----------~~~~~~~~~~~ 97 (203)
++|+++|.+|+|||||+++|.+..+...+.++.+... ..+... .+.+||||| ++.+......+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999887766655544333 333333 578999999 67777777777
Q ss_pred hcC-CcEEEEEEeCCCHHHHHHH-HHHHHH--------H-HhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCe
Q 048709 98 YRG-ALGAVVVYDITKRQSFDHV-ARGVEE--------L-RAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLF 166 (203)
Q Consensus 98 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~--------~-~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 166 (203)
+.. ++++++|+++.+..++..+ ..|... + ......++|+++|+||+|+.... .++..+++...+.+
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence 776 6666666666666666655 444331 1 22222579999999999997643 56677888887764
Q ss_pred -------EEEEecCCCCCHHHHHHHHHHHHHHhhccc
Q 048709 167 -------FSEASALNGDNVDTAFFRLLQEIYALSKKE 196 (203)
Q Consensus 167 -------~~~~sa~~~~~i~~~~~~i~~~~~~~~~~~ 196 (203)
+++|||++|.|++++|+++.+.+.+.++++
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~ 189 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQGRR 189 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC----
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhccc
Confidence 799999999999999999999988766543
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=4.8e-27 Score=192.31 Aligned_cols=162 Identities=23% Similarity=0.432 Sum_probs=127.5
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV 105 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 105 (203)
...++|+|+|.+|+|||||+++|++..+.. +.+|.+.. ...+...+ +.+.+|||||++.+..++..+++.+|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~--~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFN--VETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE--EEEEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCcccee--EEEEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 346999999999999999999999988543 33554433 33344443 67899999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Q 048709 106 VVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAE-----DQGLFFSEASALNGDNVD 179 (203)
Q Consensus 106 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 179 (203)
+|||++++.++..+..|+..+..... .++|+++|+||+|+.+ ....+++.+... ..++++++|||++|.|++
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 472 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 472 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSS--CCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCc--CCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHH
Confidence 99999999999999988888766543 6899999999999976 334444444322 124569999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 048709 180 TAFFRLLQEIYALSK 194 (203)
Q Consensus 180 ~~~~~i~~~~~~~~~ 194 (203)
++|++|.+.+.....
T Consensus 473 ~l~~~l~~~~~~~~~ 487 (497)
T 3lvq_E 473 EGLTWLTSNYKSKLA 487 (497)
T ss_dssp HHHHHHHHHCC----
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999987755444
No 111
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=4.3e-27 Score=168.94 Aligned_cols=158 Identities=18% Similarity=0.170 Sum_probs=123.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh------hhhHhhhc-
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR------AVTSAYYR- 99 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~~- 99 (203)
..++|+++|++|+|||||+++|++..+.....++.+.+.....+..++ ..+.+|||||+..+. .+...++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 468999999999999999999999776555556666666666676665 568999999987664 34555664
Q ss_pred -CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 048709 100 -GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNV 178 (203)
Q Consensus 100 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 178 (203)
.+|++++|+|+++. +....|+..+.. .+.|+++|+||+|+...+.+. ++..+++...+++++++||++|.|+
T Consensus 84 ~~~~~~i~v~d~~~~---~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v 156 (188)
T 2wjg_A 84 EKPDLVVNIVDATAL---ERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGI 156 (188)
T ss_dssp HCCSEEEEEEEGGGH---HHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred cCCCEEEEEecchhH---HHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCH
Confidence 59999999999864 445566666554 478999999999987644443 3567778888999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 048709 179 DTAFFRLLQEIYALS 193 (203)
Q Consensus 179 ~~~~~~i~~~~~~~~ 193 (203)
+++|+++.+.+....
T Consensus 157 ~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 157 EELKKAISIAVKDKK 171 (188)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999876544
No 112
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.94 E-value=1.2e-26 Score=162.37 Aligned_cols=150 Identities=16% Similarity=0.161 Sum_probs=107.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh-------hhhhhHhhhcC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER-------YRAVTSAYYRG 100 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~ 100 (203)
.||+++|.+|+|||||+++|.+.... ....+..+.+.....+..++. .+.+|||||... +......++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999988754 233344445556666666664 678999999876 34556678899
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC-eEEEEecCCCCCHH
Q 048709 101 ALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL-FFSEASALNGDNVD 179 (203)
Q Consensus 101 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~ 179 (203)
+|++++|+|++++.+... .++...... .+.|+++|+||+|+.+. .+++.+++ ..++ +++++||++|.|++
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~----~~~~~~~~-~~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKH----ELYLGPLY-GLGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGG----GGGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccc----hHhHHHHH-hCCCCCeEEEecccCCChH
Confidence 999999999998533222 222222222 47899999999999764 23344455 5666 79999999999999
Q ss_pred HHHHHHHHHH
Q 048709 180 TAFFRLLQEI 189 (203)
Q Consensus 180 ~~~~~i~~~~ 189 (203)
++|+++.+.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998764
No 113
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.94 E-value=2.2e-27 Score=168.51 Aligned_cols=154 Identities=23% Similarity=0.222 Sum_probs=114.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhh------h--hHhh
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRA------V--TSAY 97 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~--~~~~ 97 (203)
..++|+++|.+|+|||||+++|.+.... ....++.+.++....+.+++. .+.+|||||+..+.. + ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 4589999999999999999999987643 233345556666677777774 478999999754221 1 1246
Q ss_pred hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 048709 98 YRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDN 177 (203)
Q Consensus 98 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 177 (203)
++.+|++++|+|++++.+++. ..|+..+......++|+++|+||+|+.+... .++...+.+++++||++|.|
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG 152 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence 899999999999998777653 4677766665556799999999999854211 11223467899999999999
Q ss_pred HHHHHHHHHHHHH
Q 048709 178 VDTAFFRLLQEIY 190 (203)
Q Consensus 178 i~~~~~~i~~~~~ 190 (203)
++++|++|.+.+.
T Consensus 153 v~~l~~~l~~~~~ 165 (172)
T 2gj8_A 153 VDVLRNHLKQSMG 165 (172)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988654
No 114
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=1.8e-26 Score=173.73 Aligned_cols=155 Identities=16% Similarity=0.164 Sum_probs=120.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhh------hhHhhh--
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRA------VTSAYY-- 98 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~-- 98 (203)
..++|+++|.+|||||||+|+|++..+.....+..+.......+...+ ..+.+|||||...+.. +...|+
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~ 81 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLLK 81 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence 569999999999999999999999887655556555555555555544 6789999999876653 335555
Q ss_pred cCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 048709 99 RGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNV 178 (203)
Q Consensus 99 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 178 (203)
..+|++++|+|+++.++.. .|...+.. .++|+++++||+|+...+.+.. +..+++...+++++++||++|.|+
T Consensus 82 ~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~gi 154 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEGL 154 (258)
T ss_dssp SCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTTH
T ss_pred cCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcCH
Confidence 5899999999999865532 34444443 4789999999999876444432 467788888999999999999999
Q ss_pred HHHHHHHHHHHH
Q 048709 179 DTAFFRLLQEIY 190 (203)
Q Consensus 179 ~~~~~~i~~~~~ 190 (203)
+++++++.+.+.
T Consensus 155 ~el~~~i~~~~~ 166 (258)
T 3a1s_A 155 EELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
No 115
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.94 E-value=2.2e-26 Score=177.57 Aligned_cols=165 Identities=17% Similarity=0.076 Sum_probs=124.8
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCC-CCcceeeEEEEEEECCEEEEEEEEeCCCchhh----------h
Q 048709 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSK-STIGVEFQTRTVTINSKIIKAQIWDTAGQERY----------R 91 (203)
Q Consensus 23 ~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----------~ 91 (203)
++.+..-.|+++|.+|||||||+|+|++.++..... +.++..........+ ...++.+|||||...+ .
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence 345677999999999999999999999988764332 223333333333443 1367899999997443 3
Q ss_pred hhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcC--CeEEE
Q 048709 92 AVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQG--LFFSE 169 (203)
Q Consensus 92 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~ 169 (203)
.....++..+|++++|+|++++.+......|+..+.. .+.|+++|+||+|+........+.+..+....+ .++++
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~ 160 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP 160 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence 5566788999999999999998777776666666655 478999999999997433555666777777765 78999
Q ss_pred EecCCCCCHHHHHHHHHHHHHH
Q 048709 170 ASALNGDNVDTAFFRLLQEIYA 191 (203)
Q Consensus 170 ~sa~~~~~i~~~~~~i~~~~~~ 191 (203)
+||++|.|++++++++.+.+.+
T Consensus 161 vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHSCB
T ss_pred EeCCCCCCHHHHHHHHHHhCcc
Confidence 9999999999999999987754
No 116
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.94 E-value=4.9e-26 Score=164.06 Aligned_cols=158 Identities=17% Similarity=0.160 Sum_probs=114.3
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCC----------chhhhh
Q 048709 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG----------QERYRA 92 (203)
Q Consensus 23 ~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~ 92 (203)
.+....++|+|+|.+|+|||||+++|++...... .++.+.+........+. .+.+||||| ++.+..
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (195)
T 3pqc_A 18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFV-SKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKR 93 (195)
T ss_dssp CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCC-CSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHcCccccc-cCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHH
Confidence 3445678999999999999999999999874333 24444444443333333 477999999 667777
Q ss_pred hhHhhhcCC---cEEEEEEeCCCHHH--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc--CCCHHHHHHHHHHc-C
Q 048709 93 VTSAYYRGA---LGAVVVYDITKRQS--FDHVARGVEELRAHADSSIRIILIGNKSDLVDMW--AVSAEDVVEFAEDQ-G 164 (203)
Q Consensus 93 ~~~~~~~~~---d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~-~ 164 (203)
+...+++.+ |++++|+|+++..+ ...+..|+.. .+.|+++|+||+|+.+.. ....+++.+++... .
T Consensus 94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 167 (195)
T 3pqc_A 94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGE 167 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCC
Confidence 777787766 99999999987533 2233333322 268999999999997532 23334556666653 4
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHHHH
Q 048709 165 LFFSEASALNGDNVDTAFFRLLQEIY 190 (203)
Q Consensus 165 ~~~~~~sa~~~~~i~~~~~~i~~~~~ 190 (203)
++++++||++|.|++++|++|.+.+.
T Consensus 168 ~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 168 YTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred CceEEEecCCCCCHHHHHHHHHHHhh
Confidence 78999999999999999999998764
No 117
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.94 E-value=7.6e-27 Score=175.58 Aligned_cols=151 Identities=15% Similarity=0.121 Sum_probs=118.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhh----------hhHhhh
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRA----------VTSAYY 98 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------~~~~~~ 98 (203)
.+|+++|.+|||||||+|+|++........+..+.+.....+.+++. .+.+|||||...+.. +...|+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999998876666677777777777777775 689999999766543 455677
Q ss_pred --cCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCC
Q 048709 99 --RGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGD 176 (203)
Q Consensus 99 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 176 (203)
..+|++++|+|+++.++...+..+ +. ..+.|+++|+||+|+........ ....+....+++++++||++|.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~---~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~ 152 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQ---LF---ELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNI 152 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHH---HT---TSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTB
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHH---HH---HcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCC
Confidence 899999999999997655443322 22 24789999999999875433222 3455677789999999999999
Q ss_pred CHHHHHHHHHHH
Q 048709 177 NVDTAFFRLLQE 188 (203)
Q Consensus 177 ~i~~~~~~i~~~ 188 (203)
|++++++++.+.
T Consensus 153 gi~el~~~i~~~ 164 (256)
T 3iby_A 153 GIPALQQSLLHC 164 (256)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999999875
No 118
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.94 E-value=1.4e-26 Score=175.42 Aligned_cols=153 Identities=18% Similarity=0.175 Sum_probs=116.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh------hhhHhhhc-
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR------AVTSAYYR- 99 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~~- 99 (203)
..++|+++|.+|||||||+|+|++........+..+.+ .....++. ...+.+|||||...+. .+...|+.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~--~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVE--RKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCS--CEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEE--EEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 35899999999999999999999876544444443333 33444555 5678999999987765 45566665
Q ss_pred -CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 048709 100 -GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNV 178 (203)
Q Consensus 100 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 178 (203)
.+|++++|+|+++.++. ..|...+.. .++|+++++||+|+...+.+. .+...++...+++++++||++|.|+
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi 151 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV 151 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence 69999999999986554 344444444 478999999999987543333 3567778888999999999999999
Q ss_pred HHHHHHHHHHH
Q 048709 179 DTAFFRLLQEI 189 (203)
Q Consensus 179 ~~~~~~i~~~~ 189 (203)
+++|+++.+.+
T Consensus 152 ~el~~~i~~~~ 162 (272)
T 3b1v_A 152 DQVVKKAAHTT 162 (272)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 119
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.94 E-value=1.9e-27 Score=182.51 Aligned_cols=155 Identities=20% Similarity=0.212 Sum_probs=117.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCcc---CCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhh---hhHhhhcCCcE
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCF---DSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRA---VTSAYYRGALG 103 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~~~~~~~~~d~ 103 (203)
||+++|..|+|||||++++.+...+. ...+|.+.++.. ++ ..+++++|||+|+++|.. ....|++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999887654332 244666666543 22 347899999999999964 46889999999
Q ss_pred EEEEEeCCCH--HHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcc-------cCCCHHHHHHHHHH----cCCeEEEE
Q 048709 104 AVVVYDITKR--QSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM-------WAVSAEDVVEFAED----QGLFFSEA 170 (203)
Q Consensus 104 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~ 170 (203)
+|+|||++++ ++...+..|+..+... .+++|+++++||+|+... +++..++..+++.. .++++++|
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999997 3444444445544433 368999999999999753 23455556666664 67899999
Q ss_pred ecCCCCCHHHHHHHHHHHHHH
Q 048709 171 SALNGDNVDTAFFRLLQEIYA 191 (203)
Q Consensus 171 sa~~~~~i~~~~~~i~~~~~~ 191 (203)
||++ .+|.++|..+++.+..
T Consensus 155 SAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSST
T ss_pred ccCC-CcHHHHHHHHHHHHHh
Confidence 9998 5899999999887654
No 120
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.93 E-value=5.6e-27 Score=193.33 Aligned_cols=164 Identities=20% Similarity=0.214 Sum_probs=124.2
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEE------EEE--CCEEEEEEEEeCCCchhhhhhhHh
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRT------VTI--NSKIIKAQIWDTAGQERYRAVTSA 96 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~l~D~~g~~~~~~~~~~ 96 (203)
....+||+++|.+|||||||+++|++..+...+.++.+..+.... +.+ ++..+.+.+|||||++.+..+...
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 345799999999999999999999999887777777777665442 111 233578999999999999999999
Q ss_pred hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCC
Q 048709 97 YYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGD 176 (203)
Q Consensus 97 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 176 (203)
+++.+|++++|+|+++.+ .+..|+..+.... .+.|+++|+||+|+...+.+..+++.+++...+++++++||++|.
T Consensus 118 ~l~~~d~ii~V~D~s~~~---~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~ 193 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTDS---NKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGD 193 (535)
T ss_dssp HHHSSEEEEEEECGGGGG---GHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC----
T ss_pred HccCCcEEEEEEeCCCch---hHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCccc
Confidence 999999999999998754 4567777776654 468999999999998877788888999988999999999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q 048709 177 NVDTAFFRLLQEIYAL 192 (203)
Q Consensus 177 ~i~~~~~~i~~~~~~~ 192 (203)
|++++++.+.+.+...
T Consensus 194 gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 194 GVESIAKSLKSAVLHP 209 (535)
T ss_dssp -CTTHHHHHHHHHTCT
T ss_pred CHHHHHHHHHHHHhcc
Confidence 9999999999988664
No 121
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.93 E-value=2.7e-26 Score=184.87 Aligned_cols=183 Identities=18% Similarity=0.130 Sum_probs=128.3
Q ss_pred CCCCCCccccccccccCCCC-----CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEE
Q 048709 4 EMSGDGTDHRHQQQDKMIPD-----KIDYVFKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKII 77 (203)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 77 (203)
+.|+.|++++...+....+. ..+..++|+++|.+|+|||||+|+|++.... ....+.++.+.....+..++.
T Consensus 146 A~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~-- 223 (436)
T 2hjg_A 146 GTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ-- 223 (436)
T ss_dssp TTTTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--
T ss_pred CcCCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--
Confidence 44666666665554443331 1235699999999999999999999998764 333355555555556666765
Q ss_pred EEEEEeCCCc----------hhhhhhhH-hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 048709 78 KAQIWDTAGQ----------ERYRAVTS-AYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV 146 (203)
Q Consensus 78 ~~~l~D~~g~----------~~~~~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 146 (203)
.+.+|||||+ +.|..+.. .+++.+|++++|+|++++.+++.. .|+..+.. .++|+++|+||+|+.
T Consensus 224 ~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~ 299 (436)
T 2hjg_A 224 EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAV 299 (436)
T ss_dssp EEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGS
T ss_pred EEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCC
Confidence 4789999997 55554443 478899999999999998777665 46555543 578999999999998
Q ss_pred cccCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709 147 DMWAVSAEDVVEFAE-----DQGLFFSEASALNGDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 147 ~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~ 192 (203)
+.+....+++.+... ..+++++++||++|.|++++|+.+.+.+...
T Consensus 300 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 300 DKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp CCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHh
Confidence 755444444433332 2367999999999999999999999887654
No 122
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.93 E-value=5.6e-26 Score=167.43 Aligned_cols=167 Identities=15% Similarity=0.107 Sum_probs=111.2
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC-CEEEEEEEEeCCC----------chhhh
Q 048709 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN-SKIIKAQIWDTAG----------QERYR 91 (203)
Q Consensus 23 ~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g----------~~~~~ 91 (203)
.+....++|+|+|.+|+|||||+|+|++...........+.+.......+. .....+.+||||| ++.+.
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 334567999999999999999999999987321111222223333333333 3335789999999 45556
Q ss_pred hhhHhhhcC---CcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCC--CHHHHHHHHHH----
Q 048709 92 AVTSAYYRG---ALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAV--SAEDVVEFAED---- 162 (203)
Q Consensus 92 ~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~---- 162 (203)
.....|+.. +|++++|+|+++..+... ..++..+.. .++|+++|+||+|+...... ..+++.+.+..
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 179 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA 179 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc
Confidence 666677766 788999999987533222 234444433 47899999999999763221 12222333333
Q ss_pred ---cCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q 048709 163 ---QGLFFSEASALNGDNVDTAFFRLLQEIYALS 193 (203)
Q Consensus 163 ---~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~~ 193 (203)
...+++++||++|.|+++++++|.+.+....
T Consensus 180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 5678999999999999999999999876543
No 123
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.93 E-value=2.5e-25 Score=168.91 Aligned_cols=157 Identities=20% Similarity=0.154 Sum_probs=122.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhh------hhHhhh--c
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRA------VTSAYY--R 99 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~--~ 99 (203)
.++|+++|++|||||||+|+|++........++.+.+.....+..++. .+.+|||||...+.. ....|+ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 489999999999999999999998876666677777777777777764 489999999876654 455666 7
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 048709 100 GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVD 179 (203)
Q Consensus 100 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 179 (203)
++|++++|+|+++.+. ...++..+... ...|+++++||+|+........ +...+....+++++++||++|.|++
T Consensus 81 ~~d~vi~v~D~~~~~~---~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi~ 154 (271)
T 3k53_A 81 NADVIVDIVDSTCLMR---NLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKI-DIKKMRKELGVPVIPTNAKKGEGVE 154 (271)
T ss_dssp CCSEEEEEEEGGGHHH---HHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCC-CHHHHHHHHSSCEEECBGGGTBTHH
T ss_pred CCcEEEEEecCCcchh---hHHHHHHHHhc--CCCCEEEEEEChhcCcccccHH-HHHHHHHHcCCcEEEEEeCCCCCHH
Confidence 8999999999998643 22333444433 2389999999999865433333 2667778889999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 048709 180 TAFFRLLQEIYAL 192 (203)
Q Consensus 180 ~~~~~i~~~~~~~ 192 (203)
++++.+.+.+...
T Consensus 155 ~l~~~i~~~~~~~ 167 (271)
T 3k53_A 155 ELKRMIALMAEGK 167 (271)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcc
Confidence 9999999887654
No 124
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.93 E-value=1.2e-25 Score=182.13 Aligned_cols=184 Identities=19% Similarity=0.149 Sum_probs=130.9
Q ss_pred CCCCCCccccccccccCCC-----CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCC-ccCCCCCcceeeEEEEEEECCEEE
Q 048709 4 EMSGDGTDHRHQQQDKMIP-----DKIDYVFKVVVIGDSAVGKSQILSRFTKNEF-CFDSKSTIGVEFQTRTVTINSKII 77 (203)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~vvG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 77 (203)
+.++.|++++........+ ......++|+++|.+|+|||||+++|++... .....++++.+.....+..++.
T Consensus 166 A~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~-- 243 (456)
T 4dcu_A 166 GTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ-- 243 (456)
T ss_dssp TTTCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--
T ss_pred cccccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--
Confidence 3455565555544433322 1234579999999999999999999998753 2334455555555566667765
Q ss_pred EEEEEeCCC----------chhhhhhhH-hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 048709 78 KAQIWDTAG----------QERYRAVTS-AYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV 146 (203)
Q Consensus 78 ~~~l~D~~g----------~~~~~~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 146 (203)
.+.+||||| ++.|..... .+++.+|++++|+|+++..+... ..++..+.. .+.|+++|+||+|+.
T Consensus 244 ~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~---~~~~~ilv~NK~Dl~ 319 (456)
T 4dcu_A 244 EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE---AGKAVVIVVNKWDAV 319 (456)
T ss_dssp EEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCEEEEEEECGGGS
T ss_pred eEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH---cCCCEEEEEEChhcC
Confidence 679999999 667766555 37899999999999988533222 244444443 478999999999998
Q ss_pred cccCCCHHHHHHHHHHc-----CCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q 048709 147 DMWAVSAEDVVEFAEDQ-----GLFFSEASALNGDNVDTAFFRLLQEIYALS 193 (203)
Q Consensus 147 ~~~~~~~~~~~~~~~~~-----~~~~~~~sa~~~~~i~~~~~~i~~~~~~~~ 193 (203)
+.+....+++.+.+... .++++++||++|.|++++|+++.+.+....
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 371 (456)
T 4dcu_A 320 DKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHS 371 (456)
T ss_dssp CCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhc
Confidence 76667777777777654 579999999999999999999998876654
No 125
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.93 E-value=4.3e-26 Score=173.24 Aligned_cols=154 Identities=13% Similarity=0.130 Sum_probs=117.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh----------hhhHhh
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR----------AVTSAY 97 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----------~~~~~~ 97 (203)
.++|+++|.+|||||||+|+|++........+..+.+.....+...+ ..+.+|||||...+. .+...|
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 48999999999999999999999887666666666666666666655 457899999977655 223334
Q ss_pred h--cCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCC
Q 048709 98 Y--RGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNG 175 (203)
Q Consensus 98 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 175 (203)
+ ..+|++++|+|+++.+....+..+ +... ++|+++|+||+|+....... .....++...+++++++||++|
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~~~~~---l~~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g 153 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLYLTLQ---LLEL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTRG 153 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHHHHHH---HHHH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGGG
T ss_pred HhhcCCCEEEEEecCCChHHHHHHHHH---HHhc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCCC
Confidence 3 799999999999987655444333 3332 78999999999986543221 2345667788999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 048709 176 DNVDTAFFRLLQEIY 190 (203)
Q Consensus 176 ~~i~~~~~~i~~~~~ 190 (203)
.|+++++++|.+.+.
T Consensus 154 ~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 154 RGIEALKLAIDRYKA 168 (274)
T ss_dssp HHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999887654
No 126
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=4.4e-26 Score=167.52 Aligned_cols=144 Identities=17% Similarity=0.255 Sum_probs=104.9
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccC---CCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcC-
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFD---SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRG- 100 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~- 100 (203)
....++|+++|++|+|||||+++|.+..+... +.++.+..+ ....+.+|||||++.+...+..++..
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 45679999999999999999999999876442 223322221 33568999999999998888888877
Q ss_pred ---CcEEEEEEeCC-CHHHHHHHHHHHHHHHhh----cCCCCcEEEEEeCCCCCcccCCC------HHHHHHHHHHcCCe
Q 048709 101 ---ALGAVVVYDIT-KRQSFDHVARGVEELRAH----ADSSIRIILIGNKSDLVDMWAVS------AEDVVEFAEDQGLF 166 (203)
Q Consensus 101 ---~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~~~~~ 166 (203)
+|++++|+|++ ++.++..+..|+..+... ...++|+++|+||+|+.....+. .+++..++...+++
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS 159 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999 888888888887777654 34689999999999998754332 34566666667778
Q ss_pred EEEEecCCCCC
Q 048709 167 FSEASALNGDN 177 (203)
Q Consensus 167 ~~~~sa~~~~~ 177 (203)
++++||++|.+
T Consensus 160 ~~~~Sa~~~~~ 170 (218)
T 1nrj_B 160 LNEVERKINEE 170 (218)
T ss_dssp HHC--------
T ss_pred ccccccccccc
Confidence 88999998765
No 127
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.92 E-value=6.9e-24 Score=166.80 Aligned_cols=163 Identities=20% Similarity=0.208 Sum_probs=123.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh---------hhhHh
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR---------AVTSA 96 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~ 96 (203)
...++|+++|.+|+|||||+++|.+........+..+.......+..++ ..+.+|||||...+. .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 4568999999999999999999998875443334444444444444443 568999999964321 12234
Q ss_pred hhcCCcEEEEEEeCCCHH--HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCC
Q 048709 97 YYRGALGAVVVYDITKRQ--SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALN 174 (203)
Q Consensus 97 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 174 (203)
+...+|++++|+|++++. +++....|+..+..... +.|+++|+||+|+.... ..+++.+++...+++++++||++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~iSA~~ 319 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEE--NIKRLEKFVKEKGLNPIKISALK 319 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHH--HHHHHHHHHHHTTCCCEECBTTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChH--HHHHHHHHHHhcCCCeEEEeCCC
Confidence 556799999999998876 66777788887776543 78999999999997643 23556677778889999999999
Q ss_pred CCCHHHHHHHHHHHHHHhh
Q 048709 175 GDNVDTAFFRLLQEIYALS 193 (203)
Q Consensus 175 ~~~i~~~~~~i~~~~~~~~ 193 (203)
|.|+++++++|.+.+....
T Consensus 320 g~gi~~l~~~i~~~l~~~~ 338 (357)
T 2e87_A 320 GTGIDLVKEEIIKTLRPLA 338 (357)
T ss_dssp TBTHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHH
Confidence 9999999999999886643
No 128
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.92 E-value=1.2e-25 Score=179.38 Aligned_cols=162 Identities=15% Similarity=0.104 Sum_probs=116.6
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhh-------
Q 048709 22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV------- 93 (203)
Q Consensus 22 ~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~------- 93 (203)
..+....++|+|+|.+|+|||||+++|++..+. ....+..+.+.....+.+.+.. .+.+|||||+..+..+
T Consensus 28 ~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~ 106 (423)
T 3qq5_A 28 LPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEK 106 (423)
T ss_dssp C---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHH
T ss_pred cCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHH
Confidence 344566899999999999999999999998764 3333455566666666665543 6899999998776543
Q ss_pred hHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecC
Q 048709 94 TSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASAL 173 (203)
Q Consensus 94 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 173 (203)
...++..+|++++|+|+...+. ...|+..+... ++|+++|+||+|+...... +...+++..++++++++||+
T Consensus 107 ~~~~l~~aD~vllVvD~~~~~~---~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAk 178 (423)
T 3qq5_A 107 ARRVFYRADCGILVTDSAPTPY---EDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSAL 178 (423)
T ss_dssp HHHHHTSCSEEEEECSSSCCHH---HHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSC
T ss_pred HHHHHhcCCEEEEEEeCCChHH---HHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECC
Confidence 3457899999999999944332 34555655553 7899999999999875433 56666677788999999999
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q 048709 174 NGDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 174 ~~~~i~~~~~~i~~~~~~~ 192 (203)
+|.|++++|++|.+.+...
T Consensus 179 tg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 179 QKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CTTSTTTHHHHHHHHSCCC
T ss_pred CCCCHHHHHHHHHHhhhhh
Confidence 9999999999999988443
No 129
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.91 E-value=3.8e-24 Score=167.15 Aligned_cols=124 Identities=15% Similarity=0.212 Sum_probs=103.8
Q ss_pred EEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC----------HHHHHHHHHHHHHHHhhcC-CCCcE
Q 048709 68 RTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITK----------RQSFDHVARGVEELRAHAD-SSIRI 136 (203)
Q Consensus 68 ~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~-~~~p~ 136 (203)
..+.++ .+.+.+||++|++.++..+..|+++++++|||+|+++ ..++.....|+..+..... .++|+
T Consensus 186 ~~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pi 263 (353)
T 1cip_A 186 THFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI 263 (353)
T ss_dssp EEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred EEEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcE
Confidence 344444 4678999999999999999999999999999999998 4678888888888876433 68999
Q ss_pred EEEEeCCCCCccc---------------CCCHHHHHHHHH-----------HcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 048709 137 ILIGNKSDLVDMW---------------AVSAEDVVEFAE-----------DQGLFFSEASALNGDNVDTAFFRLLQEIY 190 (203)
Q Consensus 137 ivv~nK~D~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~sa~~~~~i~~~~~~i~~~~~ 190 (203)
++++||+|+...+ .+..+++.+++. ..++.+++|||+++.||+++|+++.+.+.
T Consensus 264 iLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~ 343 (353)
T 1cip_A 264 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII 343 (353)
T ss_dssp EEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence 9999999985322 367888888886 35678999999999999999999999987
Q ss_pred Hhh
Q 048709 191 ALS 193 (203)
Q Consensus 191 ~~~ 193 (203)
...
T Consensus 344 ~~~ 346 (353)
T 1cip_A 344 KNN 346 (353)
T ss_dssp HHC
T ss_pred HHH
Confidence 644
No 130
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.91 E-value=4.6e-24 Score=172.74 Aligned_cols=157 Identities=19% Similarity=0.156 Sum_probs=99.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhh--------Hhh
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVT--------SAY 97 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~~ 97 (203)
..++|+++|.+|+|||||+|+|++.+.. ....+.++.+.....+.+++ +.+.+|||||...+.... ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 4589999999999999999999988643 33335555666666667776 468999999987665433 336
Q ss_pred hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 048709 98 YRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDN 177 (203)
Q Consensus 98 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 177 (203)
+..+|++++|+|++++.+++.+..+...+... .+.|+++|+||+|+...... +..++......+++++||++|.|
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l--~~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~G 384 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAH--PAAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDG 384 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC--TTSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBS
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhc--CCCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCC
Confidence 89999999999999987765333333322222 27899999999999764322 22334433247899999999999
Q ss_pred HHHHHHHHHHHHH
Q 048709 178 VDTAFFRLLQEIY 190 (203)
Q Consensus 178 i~~~~~~i~~~~~ 190 (203)
+++++++|.+.+.
T Consensus 385 I~eL~~~i~~~~~ 397 (476)
T 3gee_A 385 IDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999886
No 131
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.91 E-value=1e-23 Score=161.95 Aligned_cols=155 Identities=19% Similarity=0.147 Sum_probs=108.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCC-CCCcceeeEEEEEEECCEEEEEEEEeCCCchh--------hhhhhHhh
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDS-KSTIGVEFQTRTVTINSKIIKAQIWDTAGQER--------YRAVTSAY 97 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~ 97 (203)
...+|+++|.+|+|||||+|+|++.++.... .+.++..........+ ..++.+|||||... +......+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYEA 83 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence 4568999999999999999999998876432 2222222222223333 36789999999765 44556678
Q ss_pred hcCCcEEEEEEeCCCHHHHHHHHHHH-HHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHc--CCeEEEEecCC
Q 048709 98 YRGALGAVVVYDITKRQSFDHVARGV-EELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQ--GLFFSEASALN 174 (203)
Q Consensus 98 ~~~~d~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~sa~~ 174 (203)
++.+|++++|+|++++.+... .|+ ..+... ..+.|+++|+||+|+..... ++.+.+..+ ..+++++||++
T Consensus 84 l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPED--ELVARALKPL-VGKVPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSALD 156 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHHH--HHHHHHHGGG-TTTSCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTTC
T ss_pred HhcCCEEEEEEECCCCCChHH--HHHHHHHHhh-cCCCCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCCC
Confidence 899999999999987644332 343 334332 24789999999999975322 123333332 35799999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 048709 175 GDNVDTAFFRLLQEIY 190 (203)
Q Consensus 175 ~~~i~~~~~~i~~~~~ 190 (203)
|.|++++++.+.+.+.
T Consensus 157 g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 157 ERQVAELKADLLALMP 172 (301)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHhcc
Confidence 9999999999987653
No 132
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.91 E-value=3e-24 Score=167.15 Aligned_cols=160 Identities=18% Similarity=0.172 Sum_probs=121.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh----hhhhhHhhh---cCCc
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER----YRAVTSAYY---RGAL 102 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~~---~~~d 102 (203)
+|+|+|.+|||||||+++|++........+.++..+....+.+++ ...+.+|||||... +..+...|+ ..+|
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 689999999999999999998765444434444555555565553 13689999999643 223334444 4599
Q ss_pred EEEEEEeCCC---HHHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcC--CeEEEEecCCC
Q 048709 103 GAVVVYDITK---RQSFDHVARGVEELRAHAD--SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQG--LFFSEASALNG 175 (203)
Q Consensus 103 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~ 175 (203)
++++|+|+++ +.+++.+..|+..+..... .++|+++|+||+|+... .+.+.++..... .+++++||+++
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~----~e~~~~l~~~l~~~~~v~~iSA~tg 314 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPISAVTR 314 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC----HHHHHHHHHHhhcCCCEEEEECCCC
Confidence 9999999998 7788888888888877653 57999999999999753 244566666665 68999999999
Q ss_pred CCHHHHHHHHHHHHHHhhc
Q 048709 176 DNVDTAFFRLLQEIYALSK 194 (203)
Q Consensus 176 ~~i~~~~~~i~~~~~~~~~ 194 (203)
.|+++++++|.+.+.+...
T Consensus 315 ~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 315 EGLRELLFEVANQLENTPE 333 (342)
T ss_dssp STTHHHHHHHHHHHTSCCC
T ss_pred cCHHHHHHHHHHHHhhCcc
Confidence 9999999999998866443
No 133
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.90 E-value=1.1e-23 Score=170.67 Aligned_cols=153 Identities=20% Similarity=0.270 Sum_probs=117.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCch-hhhh--------hhHhh
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE-RYRA--------VTSAY 97 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-~~~~--------~~~~~ 97 (203)
.++|+++|.+|+|||||+|+|++.+.. ....+.++.++....+.+++ ..+.+|||||.. .+.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 489999999999999999999987643 34445666667667777776 457999999987 5432 23467
Q ss_pred hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 048709 98 YRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDN 177 (203)
Q Consensus 98 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 177 (203)
+..+|++++|+|++++.+++.. .++..+ .+.|+++|+||+|+.. ....+++.+++ ..+++++++||++|.|
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~-~il~~l-----~~~piivV~NK~DL~~--~~~~~~~~~~~-~~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDR-KILERI-----KNKRYLVVINKVDVVE--KINEEEIKNKL-GTDRHMVKISALKGEG 391 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHH-HHHHHH-----TTSSEEEEEEECSSCC--CCCHHHHHHHH-TCSTTEEEEEGGGTCC
T ss_pred hhcccEEEEEecCCCCCCHHHH-HHHHHh-----cCCCEEEEEECccccc--ccCHHHHHHHh-cCCCcEEEEECCCCCC
Confidence 8999999999999987666554 222322 3789999999999975 34555665543 2457899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 048709 178 VDTAFFRLLQEIYA 191 (203)
Q Consensus 178 i~~~~~~i~~~~~~ 191 (203)
+++++++|.+.+..
T Consensus 392 i~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 392 LEKLEESIYRETQE 405 (482)
T ss_dssp HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999997653
No 134
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.90 E-value=8.3e-23 Score=152.24 Aligned_cols=165 Identities=12% Similarity=0.138 Sum_probs=108.2
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCC--CcceeeEEEEEEECCEEEEEEEEeCCCc-----------hh
Q 048709 23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKS--TIGVEFQTRTVTINSKIIKAQIWDTAGQ-----------ER 89 (203)
Q Consensus 23 ~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~-----------~~ 89 (203)
......++|+|+|.+|+|||||+|+|++........+ +.+..........++. .+.+|||||. ..
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~ 101 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETSKE 101 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHHHH
Confidence 3445679999999999999999999999887655444 4445555556666664 5789999993 23
Q ss_pred hhhhhHhhhcCCcEEEEEEeCCCHHH--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCC------HHHHHHHHH
Q 048709 90 YRAVTSAYYRGALGAVVVYDITKRQS--FDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVS------AEDVVEFAE 161 (203)
Q Consensus 90 ~~~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~ 161 (203)
+......++.++|++++|+|+++... ...+..+...+... ...|+++|+||+|+.....+. .+.+.+++.
T Consensus 102 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~ 179 (239)
T 3lxx_A 102 IIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD 179 (239)
T ss_dssp HHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH
Confidence 44444556678899999999876332 22222222222221 245899999999987643322 246777888
Q ss_pred HcCCeEEEEecCCC-----CCHHHHHHHHHHHHHH
Q 048709 162 DQGLFFSEASALNG-----DNVDTAFFRLLQEIYA 191 (203)
Q Consensus 162 ~~~~~~~~~sa~~~-----~~i~~~~~~i~~~~~~ 191 (203)
..+..++.++...+ .++.++|+.+.+.+.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 180 IFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 88888888877654 6888888888777654
No 135
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.89 E-value=5.2e-23 Score=158.67 Aligned_cols=127 Identities=16% Similarity=0.180 Sum_probs=103.5
Q ss_pred EEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCC----------CHHHHHHHHHHHHHHHhhcC-CCC
Q 048709 66 QTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDIT----------KRQSFDHVARGVEELRAHAD-SSI 134 (203)
Q Consensus 66 ~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~ 134 (203)
....+.+++ +.+++||++|++.++..+..|+++++++|+|+|++ +..++.....|+..+..... .++
T Consensus 158 ~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~ 235 (327)
T 3ohm_A 158 IEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNS 235 (327)
T ss_dssp EEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTC
T ss_pred EEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCc
Confidence 334444444 78999999999999999999999999999999665 56778888888888766544 689
Q ss_pred cEEEEEeCCCCCccc----------------CCCHHHHHHHHH----------HcCCeEEEEecCCCCCHHHHHHHHHHH
Q 048709 135 RIILIGNKSDLVDMW----------------AVSAEDVVEFAE----------DQGLFFSEASALNGDNVDTAFFRLLQE 188 (203)
Q Consensus 135 p~ivv~nK~D~~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~sa~~~~~i~~~~~~i~~~ 188 (203)
|+++++||+|+.+.+ ..+.+++.+++. ..++.+++|||+++.||+.+|..+.+.
T Consensus 236 ~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~ 315 (327)
T 3ohm_A 236 SVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDT 315 (327)
T ss_dssp EEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred eEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHH
Confidence 999999999986533 467888888853 356778999999999999999999999
Q ss_pred HHHhhc
Q 048709 189 IYALSK 194 (203)
Q Consensus 189 ~~~~~~ 194 (203)
+....-
T Consensus 316 Il~~~l 321 (327)
T 3ohm_A 316 ILQLNL 321 (327)
T ss_dssp HHHTTC
T ss_pred HHHHhH
Confidence 987543
No 136
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=1.2e-22 Score=163.85 Aligned_cols=152 Identities=22% Similarity=0.253 Sum_probs=105.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh---------hhhhhHhhh
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER---------YRAVTSAYY 98 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~~~ 98 (203)
.+|+++|.+|+|||||+|+|++.... ....+..+.+.....+.+++. .+.+|||||.+. +......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 47999999999999999999988754 233355555666666777775 468999999653 344566789
Q ss_pred cCCcEEEEEEeCCCHHHHHH--HHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHH-HHHHHHcCC-eEEEEecCC
Q 048709 99 RGALGAVVVYDITKRQSFDH--VARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDV-VEFAEDQGL-FFSEASALN 174 (203)
Q Consensus 99 ~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~sa~~ 174 (203)
+.+|++++|+|++++.+..+ +..|+. . .++|+++|+||+|+... . ..++ .++. ..++ +++++||++
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~---~---~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLR---K---STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEH 149 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHH---H---HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence 99999999999987543322 223322 2 36899999999998642 1 1233 3443 4565 789999999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q 048709 175 GDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 175 ~~~i~~~~~~i~~~~~~~ 192 (203)
|.|+.++++++.+.+.+.
T Consensus 150 g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 150 NINLDTMLETIIKKLEEK 167 (439)
T ss_dssp TBSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcccc
Confidence 999999999999988753
No 137
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.89 E-value=7.7e-23 Score=160.30 Aligned_cols=123 Identities=19% Similarity=0.242 Sum_probs=94.7
Q ss_pred EEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC----------HHHHHHHHHHHHHHHhhcC-CCCcEE
Q 048709 69 TVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITK----------RQSFDHVARGVEELRAHAD-SSIRII 137 (203)
Q Consensus 69 ~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~-~~~p~i 137 (203)
.+.+++ +.+.+|||+|++.++..+..|+++++++|||+|+++ ..++.....|+..+..... .++|++
T Consensus 195 ~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piI 272 (362)
T 1zcb_A 195 DFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII 272 (362)
T ss_dssp EEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEE
T ss_pred EeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEE
Confidence 344443 678999999999999999999999999999999999 6789998889888876533 689999
Q ss_pred EEEeCCCCCccc----------------CCCHHHHHHHHH-----------HcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 048709 138 LIGNKSDLVDMW----------------AVSAEDVVEFAE-----------DQGLFFSEASALNGDNVDTAFFRLLQEIY 190 (203)
Q Consensus 138 vv~nK~D~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~sa~~~~~i~~~~~~i~~~~~ 190 (203)
+++||+|+...+ .+..+++.+++. ...+.+++|||+++.||+++|+++.+.+.
T Consensus 273 Lv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~ 352 (362)
T 1zcb_A 273 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL 352 (362)
T ss_dssp EEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHH
Confidence 999999986422 266788887762 34578999999999999999999999887
Q ss_pred Hhh
Q 048709 191 ALS 193 (203)
Q Consensus 191 ~~~ 193 (203)
...
T Consensus 353 ~~~ 355 (362)
T 1zcb_A 353 HDN 355 (362)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 138
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.89 E-value=3.9e-22 Score=156.67 Aligned_cols=162 Identities=19% Similarity=0.152 Sum_probs=111.2
Q ss_pred eeE-EEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCc---------hhhhhhhHhh
Q 048709 28 VFK-VVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ---------ERYRAVTSAY 97 (203)
Q Consensus 28 ~~~-i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~---------~~~~~~~~~~ 97 (203)
.++ |+++|.+|+|||||+|+|++........+..+.++....+.+++ ..+.+|||+|. +.+..... .
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-E 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-H
Confidence 345 99999999999999999999876544445555667777788887 45789999996 22333333 5
Q ss_pred hcCCcEEEEEEeCCCHH--HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCC-CHHHHHHHHHHc---CCeEEEEe
Q 048709 98 YRGALGAVVVYDITKRQ--SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAV-SAEDVVEFAEDQ---GLFFSEAS 171 (203)
Q Consensus 98 ~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~---~~~~~~~s 171 (203)
+..+|++++|+|++++. ..+.+..+...+......+.|+++|+||+|+.+.... ..+.+..++... ..+++++|
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~S 334 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPIS 334 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 78999999999999876 5556655655555544467899999999998753210 011232333444 34689999
Q ss_pred cCCCCCHHHHHHHHHHHHHHh
Q 048709 172 ALNGDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 172 a~~~~~i~~~~~~i~~~~~~~ 192 (203)
|++|.|+++++++|.+.+...
T Consensus 335 A~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 335 ALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp TTTTBSHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhccc
Confidence 999999999999999877653
No 139
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.89 E-value=6.9e-23 Score=160.00 Aligned_cols=119 Identities=15% Similarity=0.166 Sum_probs=95.7
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCC----------CHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCC
Q 048709 75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDIT----------KRQSFDHVARGVEELRAHAD-SSIRIILIGNKS 143 (203)
Q Consensus 75 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~ 143 (203)
..+.+.+|||+|++.++..+..|+++++++|+|+|++ +..+++....|+..+..... .++|+++++||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5789999999999999999999999999999999998 77899999999988876533 689999999999
Q ss_pred CCCcccC--C-------------------CHHHHHHHHHH----------------cCCeEEEEecCCCCCHHHHHHHHH
Q 048709 144 DLVDMWA--V-------------------SAEDVVEFAED----------------QGLFFSEASALNGDNVDTAFFRLL 186 (203)
Q Consensus 144 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~sa~~~~~i~~~~~~i~ 186 (203)
|+.+.+. + ..+++.+++.. ..+.+++|||+++.||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9854321 1 14666666443 234578999999999999999999
Q ss_pred HHHHHhh
Q 048709 187 QEIYALS 193 (203)
Q Consensus 187 ~~~~~~~ 193 (203)
+.+....
T Consensus 341 ~~I~~~~ 347 (354)
T 2xtz_A 341 ETLRRRN 347 (354)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887644
No 140
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=8.9e-23 Score=164.53 Aligned_cols=161 Identities=21% Similarity=0.143 Sum_probs=109.5
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhh-----------
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV----------- 93 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----------- 93 (203)
+..++|+++|++|||||||+|+|++.... ....+.++.+.....+.+++. .+.+|||+|.......
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 34699999999999999999999987653 233344445555566677775 4689999997433221
Q ss_pred -hHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHH-H----HcCCeE
Q 048709 94 -TSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFA-E----DQGLFF 167 (203)
Q Consensus 94 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~----~~~~~~ 167 (203)
...++..+|++++|+|+++..+.... .+...+.. .+.|+++++||+|+.+.+....++..+.. . ...+++
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL 331 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence 13467889999999999876554432 22222222 47899999999999765444444443322 2 235789
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHh
Q 048709 168 SEASALNGDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 168 ~~~sa~~~~~i~~~~~~i~~~~~~~ 192 (203)
+++||++|.|++++|+.+.+.+...
T Consensus 332 ~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 332 IFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999877654
No 141
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.89 E-value=5.9e-22 Score=158.13 Aligned_cols=164 Identities=15% Similarity=0.113 Sum_probs=115.0
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEE---------E-------EEE---ECCEEEEEEEEeCC
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQT---------R-------TVT---INSKIIKAQIWDTA 85 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~---------~-------~~~---~~~~~~~~~l~D~~ 85 (203)
....++|+++|.+++|||||+++|++.......... ...... . ... .......+.+||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYA-ETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEE-EEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcc-ccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 345699999999999999999999985432211000 000000 0 000 01233689999999
Q ss_pred CchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCC--CHHHHHHHHHHc
Q 048709 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAV--SAEDVVEFAEDQ 163 (203)
Q Consensus 86 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~ 163 (203)
|++.|......++..+|++++|+|+++..++.+...++..+.... ..|+++++||+|+.+.... ..+++.+++...
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~ 161 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGT 161 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999998766666667766555442 3589999999999763211 122333333322
Q ss_pred ---CCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 048709 164 ---GLFFSEASALNGDNVDTAFFRLLQEIYA 191 (203)
Q Consensus 164 ---~~~~~~~sa~~~~~i~~~~~~i~~~~~~ 191 (203)
+++++++||++|.|+++++++|.+.+..
T Consensus 162 ~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 162 WAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp TTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred CCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 5789999999999999999999887644
No 142
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.89 E-value=8.8e-22 Score=157.34 Aligned_cols=160 Identities=19% Similarity=0.201 Sum_probs=106.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCC---CccCCCC--CcceeeEEEEEEE-------------C--C----EEEEEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNE---FCFDSKS--TIGVEFQTRTVTI-------------N--S----KIIKAQI 81 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~l 81 (203)
...++|+++|..++|||||+++|++.. +..+..+ |....+....+.. + + ....+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 356999999999999999999998643 2223223 3333333333211 1 1 2368999
Q ss_pred EeCCCchhhhhhhHhhhcCCcEEEEEEeCCC----HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC--CCHHH
Q 048709 82 WDTAGQERYRAVTSAYYRGALGAVVVYDITK----RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA--VSAED 155 (203)
Q Consensus 82 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~ 155 (203)
|||||++.|.......+..+|++++|+|+++ +++.+.+.. +... ...|+++++||+|+.+... ...++
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~ 159 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----LEIL--GIDKIIIVQNKIDLVDEKQAEENYEQ 159 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HHHT--TCCCEEEEEECTTSSCTTTTTTHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HHHc--CCCeEEEEEEccCCCCHHHHHHHHHH
Confidence 9999999988777777888999999999995 455544432 2222 2347999999999976433 23566
Q ss_pred HHHHHHH---cCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 048709 156 VVEFAED---QGLFFSEASALNGDNVDTAFFRLLQEIYA 191 (203)
Q Consensus 156 ~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~i~~~~~~ 191 (203)
+.+++.. .+++++++||++|.|+++++++|.+.+..
T Consensus 160 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 160 IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp HHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 7777665 36789999999999999999999886653
No 143
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.89 E-value=2e-23 Score=158.63 Aligned_cols=160 Identities=14% Similarity=0.194 Sum_probs=93.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCC--------CCCcceeeEEEEEEECCEEEEEEEEeCCCch-------hh
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDS--------KSTIGVEFQTRTVTINSKIIKAQIWDTAGQE-------RY 90 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-------~~ 90 (203)
...++|+|+|.+|+|||||+|+|++....... .++.+.+.....+..++..+.+.+|||||.. .+
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 45799999999999999999999887655432 3444555554544445555789999999962 23
Q ss_pred hhhh-------Hhhhc-------------CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC
Q 048709 91 RAVT-------SAYYR-------------GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA 150 (203)
Q Consensus 91 ~~~~-------~~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 150 (203)
..+. ..|+. .+|+++++++.+...-...-..++..+.. ++|+++|+||+|+....+
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e 161 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPEE 161 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHHH
Confidence 3332 33333 26789999877652111111233333332 789999999999864322
Q ss_pred C--CHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 048709 151 V--SAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189 (203)
Q Consensus 151 ~--~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~ 189 (203)
. ..+.+.+.+...+++++.+|++++.|+++++++|.+.+
T Consensus 162 ~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 162 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 1 12345556667889999999999999999999887754
No 144
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.89 E-value=5.1e-22 Score=161.48 Aligned_cols=156 Identities=16% Similarity=0.116 Sum_probs=112.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCC-------CccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhc
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNE-------FCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYR 99 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~ 99 (203)
..++|+++|.+++|||||+++|++.. ...+..+..+.+.....+.+++ ..+.+|||||++.|......++.
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~~ 95 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD 95 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHHh
Confidence 46999999999999999999999876 2222223333333333444455 57899999999999888888999
Q ss_pred CCcEEEEEEeCCC---HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc--CCCHHHHHHHHHHc----CCeEEEE
Q 048709 100 GALGAVVVYDITK---RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW--AVSAEDVVEFAEDQ----GLFFSEA 170 (203)
Q Consensus 100 ~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~----~~~~~~~ 170 (203)
.+|++++|+|+++ +++.+.+. .+.. .++|+++++||+|+.+.. +...+++.+++... .++++++
T Consensus 96 ~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~v 168 (482)
T 1wb1_A 96 IIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPI 168 (482)
T ss_dssp SCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEEC
T ss_pred hCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEE
Confidence 9999999999988 55554442 2222 367889999999997531 12234555666655 5789999
Q ss_pred ecCCCCCHHHHHHHHHHHHHH
Q 048709 171 SALNGDNVDTAFFRLLQEIYA 191 (203)
Q Consensus 171 sa~~~~~i~~~~~~i~~~~~~ 191 (203)
||++|.|+++++++|.+.+..
T Consensus 169 SA~~g~gI~~L~~~L~~~i~~ 189 (482)
T 1wb1_A 169 SAKTGFGVDELKNLIITTLNN 189 (482)
T ss_dssp CTTTCTTHHHHHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHHhhcC
Confidence 999999999999999998753
No 145
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.88 E-value=4.4e-23 Score=166.44 Aligned_cols=154 Identities=18% Similarity=0.185 Sum_probs=105.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhh--------Hhh
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVT--------SAY 97 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~~ 97 (203)
..++|+++|.+|+|||||+|+|++.+.. ....++++.+.....+.+++ ..+.+|||||...+.... ..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 4689999999999999999999987654 33335555555555666777 457999999976554332 236
Q ss_pred hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 048709 98 YRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDN 177 (203)
Q Consensus 98 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 177 (203)
+..+|++++|+|++++.+... ..++..+. ..|+++|+||+|+....... ...++. ...+++++||++|.|
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~G 370 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQG 370 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCC
Confidence 789999999999998655444 34444432 36999999999997644332 111111 356899999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 048709 178 VDTAFFRLLQEIYAL 192 (203)
Q Consensus 178 i~~~~~~i~~~~~~~ 192 (203)
+++++++|.+.+...
T Consensus 371 i~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 371 IDSLETAILEIVQTG 385 (462)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999987653
No 146
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.88 E-value=2.3e-22 Score=150.47 Aligned_cols=166 Identities=11% Similarity=0.089 Sum_probs=106.4
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCC--cceeeEEEEEEECCEEEEEEEEeCCCc--------hhhhhhh
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKST--IGVEFQTRTVTINSKIIKAQIWDTAGQ--------ERYRAVT 94 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~D~~g~--------~~~~~~~ 94 (203)
....++|+|+|.+|+|||||+|+|++........++ .+..........++ ..+.+|||||. +.+....
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 346799999999999999999999998876544333 23333444455555 56789999995 2222222
Q ss_pred Hhh----hcCCcEEEEEEeCCCHHH-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC------CCHHHHHHHHHHc
Q 048709 95 SAY----YRGALGAVVVYDITKRQS-FDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA------VSAEDVVEFAEDQ 163 (203)
Q Consensus 95 ~~~----~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~------~~~~~~~~~~~~~ 163 (203)
..+ ...+|++++|+|+++... ...+..++..+......+.|+++++||.|+.+... ...+.+..+....
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~ 175 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAEC 175 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHT
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHc
Confidence 222 389999999999986321 11222333332221113689999999999965310 1113467777888
Q ss_pred CCeEEEEecCC-----CCCHHHHHHHHHHHHHHh
Q 048709 164 GLFFSEASALN-----GDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 164 ~~~~~~~sa~~-----~~~i~~~~~~i~~~~~~~ 192 (203)
+..++.+++.. +.++.++++.|.+.+.+.
T Consensus 176 g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 176 GGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 88887777655 578999999888877653
No 147
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.88 E-value=3.9e-22 Score=150.34 Aligned_cols=164 Identities=13% Similarity=0.114 Sum_probs=107.0
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCC-cceeeEEEEEEECCEEEEEEEEeCCCchhhhh----------
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFC-FDSKST-IGVEFQTRTVTINSKIIKAQIWDTAGQERYRA---------- 92 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---------- 92 (203)
....++|+|+|.+|||||||+++|++.... ....++ .+..........++ ..+.+|||||...+..
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 345699999999999999999999987743 333333 34444445555555 4689999999755421
Q ss_pred -hhHhhhcCCcEEEEEEeCCCHHH-HHHHHHHHHHHHhhcCCCCcEEEEEe-CCCCCcccCCCH-------HHHHHHHHH
Q 048709 93 -VTSAYYRGALGAVVVYDITKRQS-FDHVARGVEELRAHADSSIRIILIGN-KSDLVDMWAVSA-------EDVVEFAED 162 (203)
Q Consensus 93 -~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~n-K~D~~~~~~~~~-------~~~~~~~~~ 162 (203)
....+++.+|++++|+|+++... ...+..++..+.... ...|.++++| |+|+... .... +++.+++..
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~ 174 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAA 174 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHH
Confidence 22336789999999999986222 122223333221111 1456777777 9999742 1111 234445655
Q ss_pred cCCe---E--EEEecCCCCCHHHHHHHHHHHHHHh
Q 048709 163 QGLF---F--SEASALNGDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 163 ~~~~---~--~~~sa~~~~~i~~~~~~i~~~~~~~ 192 (203)
.+.. + +++||++|.|++++|++|.+.+...
T Consensus 175 ~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 175 CGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 5542 2 7899999999999999999988763
No 148
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.88 E-value=7e-22 Score=163.59 Aligned_cols=160 Identities=18% Similarity=0.193 Sum_probs=110.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCC--Ccc-----CCC------CCcceeeEE--EEEEE---CCEEEEEEEEeCCCch
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNE--FCF-----DSK------STIGVEFQT--RTVTI---NSKIIKAQIWDTAGQE 88 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~--~~~-----~~~------~~~~~~~~~--~~~~~---~~~~~~~~l~D~~g~~ 88 (203)
+..+|+++|+.++|||||+++|+... +.. ... ...+.+... ..+.+ ++..+.++||||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 45799999999999999999997621 110 000 111222222 22222 4556889999999999
Q ss_pred hhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC---
Q 048709 89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL--- 165 (203)
Q Consensus 89 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--- 165 (203)
.|......++..+|++++|+|+++..+......|..... .++|+++++||+|+.+.. ..+...++....++
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~ 156 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT 156 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence 999888899999999999999998766555555544432 478999999999997632 23334555556666
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709 166 FFSEASALNGDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 166 ~~~~~sa~~~~~i~~~~~~i~~~~~~~ 192 (203)
+++++||++|.|++++++++++.+...
T Consensus 157 ~vi~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 157 DAVRCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp TCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred eEEEeecccCCCchhHHHHHhhcCCCc
Confidence 489999999999999999999887653
No 149
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.88 E-value=1.6e-22 Score=155.40 Aligned_cols=157 Identities=21% Similarity=0.131 Sum_probs=106.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCC-CCCcceeeEEEEEEECCEEEEEEEEeCCCch-hh--------hhhhHh
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDS-KSTIGVEFQTRTVTINSKIIKAQIWDTAGQE-RY--------RAVTSA 96 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-~~--------~~~~~~ 96 (203)
...+|+++|++|+|||||+|+|++..+.... .+..+.......+..++ .++.+|||||.. .. ......
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 3468999999999999999999998765332 22222222222233333 568999999986 22 223345
Q ss_pred hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC-eEEEEecCCC
Q 048709 97 YYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL-FFSEASALNG 175 (203)
Q Consensus 97 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~ 175 (203)
+++.+|++++|+|+++ -+ ....++..... ..+.|+++++||+|+........+.+.++....+. .++++||++|
T Consensus 85 ~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g 159 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR-WT--PDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG 159 (301)
T ss_dssp CCCCEEEEEEEEETTC-CC--HHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred HHhcCCEEEEEEeCCC-CC--HHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC
Confidence 6789999999999976 22 22223322222 24789999999999875222223344555555665 6999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 048709 176 DNVDTAFFRLLQEIY 190 (203)
Q Consensus 176 ~~i~~~~~~i~~~~~ 190 (203)
.|++++++.+.+.+.
T Consensus 160 ~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 160 LNVDTIAAIVRKHLP 174 (301)
T ss_dssp TTHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHhCC
Confidence 999999999887543
No 150
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.88 E-value=2.9e-23 Score=167.26 Aligned_cols=153 Identities=18% Similarity=0.170 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCch--------hhhhhhHhhhcC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE--------RYRAVTSAYYRG 100 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~~~~~ 100 (203)
.+|+++|.+|+|||||+|+|++....... .+.+.+..............+.+|||||.. .+......+++.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~-~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVE-DTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 68999999999999999999987765322 333443333333343334578999999975 566667788999
Q ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC-eEEEEecCCCCCHH
Q 048709 101 ALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL-FFSEASALNGDNVD 179 (203)
Q Consensus 101 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~ 179 (203)
+|++++|+|+.++.+... .++..+.+ ..++|+++|+||+|+..... ++.++. ..++ +++++||++|.|+.
T Consensus 83 ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv~ 153 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGLG 153 (436)
T ss_dssp CSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBTHH
T ss_pred CCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCChH
Confidence 999999999988655443 23333222 25789999999999865321 112222 3344 78999999999999
Q ss_pred HHHHHHHHHHHH
Q 048709 180 TAFFRLLQEIYA 191 (203)
Q Consensus 180 ~~~~~i~~~~~~ 191 (203)
++++++.+.+.+
T Consensus 154 ~L~~~i~~~l~~ 165 (436)
T 2hjg_A 154 DLLDAVAEHFKN 165 (436)
T ss_dssp HHHHHHHHTGGG
T ss_pred HHHHHHHHhcCc
Confidence 999999988754
No 151
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.88 E-value=1e-21 Score=157.04 Aligned_cols=161 Identities=21% Similarity=0.214 Sum_probs=112.9
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCC---ccCCCC--CcceeeEEEEEEE-------------C--C----EEEEEE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEF---CFDSKS--TIGVEFQTRTVTI-------------N--S----KIIKAQ 80 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~ 80 (203)
....++|+++|..++|||||+++|++... ..+..+ |....+....+.. + + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 35679999999999999999999986432 222223 3333333332211 1 1 136799
Q ss_pred EEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC----HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC--CCHH
Q 048709 81 IWDTAGQERYRAVTSAYYRGALGAVVVYDITK----RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA--VSAE 154 (203)
Q Consensus 81 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~ 154 (203)
+|||||++.|.......+..+|++++|+|+++ +++.+.+.. +... ...|+++++||+|+.+... ...+
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~--~~~~iivviNK~Dl~~~~~~~~~~~ 160 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQII--GQKNIIIAQNKIELVDKEKALENYR 160 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHH--TCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHc--CCCcEEEEEECccCCCHHHHHHHHH
Confidence 99999999988777777888999999999985 445444432 2222 1357999999999976321 2234
Q ss_pred HHHHHHHH---cCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 048709 155 DVVEFAED---QGLFFSEASALNGDNVDTAFFRLLQEIYA 191 (203)
Q Consensus 155 ~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~i~~~~~~ 191 (203)
++.+++.. .+++++++||++|.|+++++++|.+.+..
T Consensus 161 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 161 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 55566554 46789999999999999999999886654
No 152
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.87 E-value=1.5e-21 Score=161.42 Aligned_cols=161 Identities=20% Similarity=0.182 Sum_probs=113.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcC--CCcc-----CC--------CCCcceeeEEEEEEE---CCEEEEEEEEeCCCc
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKN--EFCF-----DS--------KSTIGVEFQTRTVTI---NSKIIKAQIWDTAGQ 87 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~--~~~~-----~~--------~~~~~~~~~~~~~~~---~~~~~~~~l~D~~g~ 87 (203)
.+..+|+++|+.++|||||+++|+.. .+.. .. ....+.......+.+ ++..+.++||||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 35689999999999999999999752 1110 00 011111111112222 455688999999999
Q ss_pred hhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC--
Q 048709 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL-- 165 (203)
Q Consensus 88 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-- 165 (203)
..|......++..+|++++|+|+++..+.+....|..... .++|+++++||+|+.+.. ..+...++....++
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~ 157 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP 157 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence 9998888889999999999999999766666655544332 478999999999997632 22334455555565
Q ss_pred -eEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709 166 -FFSEASALNGDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 166 -~~~~~sa~~~~~i~~~~~~i~~~~~~~ 192 (203)
+++++||++|.|+++++++|++.+...
T Consensus 158 ~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 158 EEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp GGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred ccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 489999999999999999999887653
No 153
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.87 E-value=1.5e-21 Score=157.12 Aligned_cols=153 Identities=21% Similarity=0.190 Sum_probs=103.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCc-------------------------------cCCCCCcceeeEEEEEEECC
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFC-------------------------------FDSKSTIGVEFQTRTVTINS 74 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 74 (203)
...++|+++|.+++|||||+++|+...-. .+..+..+.+.....+..
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~-- 92 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET-- 92 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec--
Confidence 45699999999999999999999543210 111122333333333333
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHH---HH---HHHHHHHHHHhhcCCCCc-EEEEEeCCCCCc
Q 048709 75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQS---FD---HVARGVEELRAHADSSIR-IILIGNKSDLVD 147 (203)
Q Consensus 75 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~ 147 (203)
....+.+|||||++.|......++..+|++++|+|+++... ++ +....+..+.. .++| +++++||+|+..
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDDPT 169 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCCcc
Confidence 34578999999999999988899999999999999987531 11 12222222222 3566 899999999853
Q ss_pred cc------CCCHHHHHHHHHHcC------CeEEEEecCCCCCHHHHHH
Q 048709 148 MW------AVSAEDVVEFAEDQG------LFFSEASALNGDNVDTAFF 183 (203)
Q Consensus 148 ~~------~~~~~~~~~~~~~~~------~~~~~~sa~~~~~i~~~~~ 183 (203)
.. ....+++..++...+ ++++++||++|.|+.++++
T Consensus 170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 21 112234445554444 5799999999999998654
No 154
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.87 E-value=1e-21 Score=155.10 Aligned_cols=118 Identities=14% Similarity=0.152 Sum_probs=97.3
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC----------HHHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCC
Q 048709 77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITK----------RQSFDHVARGVEELRAHA-DSSIRIILIGNKSDL 145 (203)
Q Consensus 77 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~ 145 (203)
+.+.+|||+|++.++..+..|+++++++|+|||+++ ..++..+..|+..+.... ..++|+++++||+|+
T Consensus 217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL 296 (402)
T 1azs_C 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296 (402)
T ss_dssp EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHH
T ss_pred ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhh
Confidence 678999999999999999999999999999999999 889999999999887753 378999999999998
Q ss_pred CcccC---C---------------------------CHHHHHHHH-----HH--------cCCeEEEEecCCCCCHHHHH
Q 048709 146 VDMWA---V---------------------------SAEDVVEFA-----ED--------QGLFFSEASALNGDNVDTAF 182 (203)
Q Consensus 146 ~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~sa~~~~~i~~~~ 182 (203)
...+. + ..+++..|+ .. ..+.+++|||+++.||+++|
T Consensus 297 ~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF 376 (402)
T 1azs_C 297 LAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVF 376 (402)
T ss_dssp HHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHH
T ss_pred hhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHH
Confidence 54321 1 145566653 22 24678899999999999999
Q ss_pred HHHHHHHHHhhc
Q 048709 183 FRLLQEIYALSK 194 (203)
Q Consensus 183 ~~i~~~~~~~~~ 194 (203)
.++.+.+.....
T Consensus 377 ~~v~~~I~~~~l 388 (402)
T 1azs_C 377 NDCRDIIQRMHL 388 (402)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988876543
No 155
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.87 E-value=2.7e-22 Score=155.16 Aligned_cols=116 Identities=15% Similarity=0.201 Sum_probs=97.1
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCC----------CHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCC
Q 048709 76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDIT----------KRQSFDHVARGVEELRAHAD-SSIRIILIGNKSD 144 (203)
Q Consensus 76 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D 144 (203)
.+.+++||++|++.++..+..|+++++++|+|+|++ +..++.....|+..+..... .++|+++++||+|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D 239 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD 239 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence 478999999999999999999999999999999998 67888888888888776544 7899999999999
Q ss_pred CCccc---------------CCCHHHHHHHHHHc---------------------------CCeEEEEecCCCCCHHHHH
Q 048709 145 LVDMW---------------AVSAEDVVEFAEDQ---------------------------GLFFSEASALNGDNVDTAF 182 (203)
Q Consensus 145 ~~~~~---------------~~~~~~~~~~~~~~---------------------------~~~~~~~sa~~~~~i~~~~ 182 (203)
+...+ ....+++.+++... .+.+++|||+++.||+.+|
T Consensus 240 L~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF 319 (340)
T 4fid_A 240 LFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF 319 (340)
T ss_dssp HHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred hhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence 86421 13566776665432 3678999999999999999
Q ss_pred HHHHHHHHH
Q 048709 183 FRLLQEIYA 191 (203)
Q Consensus 183 ~~i~~~~~~ 191 (203)
..+.+.+..
T Consensus 320 ~~v~~~Il~ 328 (340)
T 4fid_A 320 MLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999887
No 156
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.87 E-value=4.1e-22 Score=143.51 Aligned_cols=115 Identities=18% Similarity=0.263 Sum_probs=87.6
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccC---CCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcC-
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFD---SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRG- 100 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~- 100 (203)
....++|+|+|.+|||||||+++|.+..+... ..++.+ .+.....+.+|||||...+...+..++..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---------eeecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 35679999999999999999999999875431 112211 11134568899999998887777777765
Q ss_pred ---CcEEEEEEeCC-CHHHHHHHHHHHHHHHhh----cCCCCcEEEEEeCCCCCcc
Q 048709 101 ---ALGAVVVYDIT-KRQSFDHVARGVEELRAH----ADSSIRIILIGNKSDLVDM 148 (203)
Q Consensus 101 ---~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~ivv~nK~D~~~~ 148 (203)
+|++++|+|++ +..++..+..|+..+... ...+.|+++|+||+|+.+.
T Consensus 116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 89999999999 899999888887776554 2358999999999999764
No 157
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.87 E-value=8.2e-23 Score=160.61 Aligned_cols=161 Identities=14% Similarity=0.252 Sum_probs=89.5
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccC-CC--------CCcceeeEEEEEEECCEEEEEEEEeCCCc-------hh
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFD-SK--------STIGVEFQTRTVTINSKIIKAQIWDTAGQ-------ER 89 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-------~~ 89 (203)
...++|+|+|++|+|||||+++|++...... +. ++.+.......+..++..+.+.+|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 3468999999999999999999877543322 11 33333333333444566778999999998 55
Q ss_pred hhhhhH-------hhhcCC-------------cEEEEEEeCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCcc
Q 048709 90 YRAVTS-------AYYRGA-------------LGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDM 148 (203)
Q Consensus 90 ~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 148 (203)
+..+.. .|+..+ |+++++++.. ..++..+. .++.. ...++|+|+|+||+|+...
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~----l~~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKA----IHNKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHH----TCS-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHH----hccCCCEEEEEECCCCCCH
Confidence 665554 555443 3455555432 23333332 23222 2367899999999999764
Q ss_pred cCCCH--HHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709 149 WAVSA--EDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 149 ~~~~~--~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~ 192 (203)
+++.. +++.+++...+++++++||++|.+ ++.|.++.+.+...
T Consensus 190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence 43333 466677777889999999999999 88888888887653
No 158
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.86 E-value=6.3e-22 Score=161.26 Aligned_cols=152 Identities=18% Similarity=0.174 Sum_probs=98.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccC-----------------------------CCCCcceeeEEEEEEECCEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFD-----------------------------SKSTIGVEFQTRTVTINSKII 77 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 77 (203)
..++|+++|.+++|||||+++|++...... .....+.+.......++....
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 469999999999999999999975411000 001112222222233333446
Q ss_pred EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHH------HHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCC
Q 048709 78 KAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFD------HVARGVEELRAHADSSIRIILIGNKSDLVDMWAV 151 (203)
Q Consensus 78 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 151 (203)
.+.||||||++.|......++..+|++++|+|+++..... +....+..+... ...|+++++||+|+.+..+.
T Consensus 112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~~~ 189 (483)
T 3p26_A 112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQQ 189 (483)
T ss_dssp EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTCHH
T ss_pred eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccchHH
Confidence 7899999999999999999999999999999999864322 222222222222 23469999999999763333
Q ss_pred CHHHHH----HHHHHc-----CCeEEEEecCCCCCHHH
Q 048709 152 SAEDVV----EFAEDQ-----GLFFSEASALNGDNVDT 180 (203)
Q Consensus 152 ~~~~~~----~~~~~~-----~~~~~~~sa~~~~~i~~ 180 (203)
..+++. +++... +++++++||++|.|+.+
T Consensus 190 ~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 190 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 333333 333333 46899999999999875
No 159
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.86 E-value=1.1e-23 Score=172.14 Aligned_cols=159 Identities=18% Similarity=0.188 Sum_probs=114.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
+.++|+++|.+++|||||+++|.+..+.....++.+.++....+..+ ....+.||||||++.|..++..++..+|++++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 45789999999999999999999877766655555555444444332 12368899999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC-CCHHHHHHH---HHHc--CCeEEEEecCCCCCHHH
Q 048709 107 VYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA-VSAEDVVEF---AEDQ--GLFFSEASALNGDNVDT 180 (203)
Q Consensus 107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~---~~~~--~~~~~~~sa~~~~~i~~ 180 (203)
|+|+++....... ..+..+. ..++|+++++||+|+.+... ...+++..+ +..+ .++++++||++|.|+++
T Consensus 82 VVDa~dg~~~qt~-e~l~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 82 VVAADDGVMKQTV-ESIQHAK---DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp ECBSSSCCCHHHH-HHHHHHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EEECCCCccHHHH-HHHHHHH---HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 9999985443332 2222222 35789999999999875321 111222221 1111 35799999999999999
Q ss_pred HHHHHHHHHH
Q 048709 181 AFFRLLQEIY 190 (203)
Q Consensus 181 ~~~~i~~~~~ 190 (203)
+++++...+.
T Consensus 158 Lle~I~~l~~ 167 (537)
T 3izy_P 158 LAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhh
Confidence 9999988764
No 160
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.86 E-value=6.9e-21 Score=157.76 Aligned_cols=160 Identities=18% Similarity=0.229 Sum_probs=108.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC----------------CEEEEEEEEeCCCchhh
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN----------------SKIIKAQIWDTAGQERY 90 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~D~~g~~~~ 90 (203)
+.++|+++|++++|||||+++|++..+........+.+........+ .....++||||||+..|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 45799999999999999999998765432211011111111111110 01124899999999999
Q ss_pred hhhhHhhhcCCcEEEEEEeCCC---HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCC-------------H-
Q 048709 91 RAVTSAYYRGALGAVVVYDITK---RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVS-------------A- 153 (203)
Q Consensus 91 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-------------~- 153 (203)
..+...++..+|++++|+|+++ +++++.+.. +.. .++|+++++||+|+...+... .
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 9888888999999999999999 666655432 222 478999999999996532110 0
Q ss_pred ---------HHHHHHHHHcC---------------CeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q 048709 154 ---------EDVVEFAEDQG---------------LFFSEASALNGDNVDTAFFRLLQEIYALS 193 (203)
Q Consensus 154 ---------~~~~~~~~~~~---------------~~~~~~sa~~~~~i~~~~~~i~~~~~~~~ 193 (203)
.++...+...+ ++++++||++|.|+++++++|...+....
T Consensus 157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~ 220 (594)
T 1g7s_A 157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL 220 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccc
Confidence 01122222222 37999999999999999999998876543
No 161
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.85 E-value=3.9e-21 Score=157.43 Aligned_cols=116 Identities=16% Similarity=0.119 Sum_probs=82.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCC------------------Ccc----CCCCCcceeeEEEEEEECCEEEEEEEEe
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNE------------------FCF----DSKSTIGVEFQTRTVTINSKIIKAQIWD 83 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~------------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~D 83 (203)
....+|+|+|.+|+|||||+++|+... ... ...+..+.......+...+ ..++|||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD 88 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD 88 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence 346899999999999999999996210 000 0001122223333444444 6789999
Q ss_pred CCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709 84 TAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147 (203)
Q Consensus 84 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 147 (203)
|||+..|......+++.+|++++|+|+++..+......| ..+.. .++|+++++||+|+..
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~---~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL---RHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT---TTCCEEEEEECTTSCC
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEeCCCCcc
Confidence 999999998889999999999999999986655554333 33333 4789999999999964
No 162
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.85 E-value=6.3e-22 Score=160.27 Aligned_cols=155 Identities=16% Similarity=0.109 Sum_probs=101.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCC--------chhhhhhhHhhhc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG--------QERYRAVTSAYYR 99 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g--------~~~~~~~~~~~~~ 99 (203)
..+|+++|.+|||||||+|+|++..+.... .+.+.+..............+.+||||| ++.+......++.
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~-~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 101 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVE-DTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 101 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence 579999999999999999999998765332 3444444444445554556789999999 6677778888999
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 048709 100 GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVD 179 (203)
Q Consensus 100 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 179 (203)
.+|++++|+|+.+..+... .++..+.+. .++|+++|+||+|+.... +...++.......++++||++|.|+.
T Consensus 102 ~ad~il~VvD~~~~~~~~d--~~l~~~l~~--~~~pvilV~NK~D~~~~~----~~~~e~~~lg~~~~~~iSA~~g~gv~ 173 (456)
T 4dcu_A 102 EADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEMR----ANIYDFYSLGFGEPYPISGTHGLGLG 173 (456)
T ss_dssp HCSEEEEEEESSSCSCHHH--HHHHHHHTT--CCSCEEEEEECC-------------CCSGGGSSSSEEECCTTTCTTHH
T ss_pred hCCEEEEEEeCCCCCChHH--HHHHHHHHH--cCCCEEEEEECccchhhh----hhHHHHHHcCCCceEEeecccccchH
Confidence 9999999999887432222 233333322 578999999999986521 11222222212256799999999999
Q ss_pred HHHHHHHHHHHH
Q 048709 180 TAFFRLLQEIYA 191 (203)
Q Consensus 180 ~~~~~i~~~~~~ 191 (203)
++++.+.+.+..
T Consensus 174 ~L~~~i~~~l~~ 185 (456)
T 4dcu_A 174 DLLDAVAEHFKN 185 (456)
T ss_dssp HHHHHHHTTGGG
T ss_pred HHHHHHHhhccc
Confidence 999999876643
No 163
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.85 E-value=3e-21 Score=152.04 Aligned_cols=147 Identities=11% Similarity=0.053 Sum_probs=106.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD 109 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 109 (203)
+|+++|.+++|||||+++|+. +..+.+..... +......+.+|||||++.|.......+..+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~--------~giTi~~~~~~--~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK--------KGTSSDITMYN--NDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE--------EEEESSSEEEE--ECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHh--------CCEEEEeeEEE--EecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 999999999999999999981 11122222222 33233568999999999998777788899999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCCcE-EEEEe-CCCCCcccCCC--HHHHHHHHHHc---CCeEEE--EecCC---CCC
Q 048709 110 ITKRQSFDHVARGVEELRAHADSSIRI-ILIGN-KSDLVDMWAVS--AEDVVEFAEDQ---GLFFSE--ASALN---GDN 177 (203)
Q Consensus 110 ~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~D~~~~~~~~--~~~~~~~~~~~---~~~~~~--~sa~~---~~~ 177 (203)
+. ..+.+..+++..+.. .++|. ++++| |+|+ +..... .+++.+++... .+++++ +||++ +.|
T Consensus 93 -~~-g~~~qt~e~~~~~~~---~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDL---LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHH---TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred -CC-CCcHHHHHHHHHHHH---cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence 54 334444555554444 35676 88999 9999 532211 24555555544 368999 99999 999
Q ss_pred HHHHHHHHHHHHHHh
Q 048709 178 VDTAFFRLLQEIYAL 192 (203)
Q Consensus 178 i~~~~~~i~~~~~~~ 192 (203)
++++++.|.+.+...
T Consensus 167 i~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 167 VDELKARINEVAEKI 181 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccc
Confidence 999999999887653
No 164
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.84 E-value=1.4e-20 Score=151.56 Aligned_cols=153 Identities=22% Similarity=0.226 Sum_probs=102.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccC------------CCCCc-------------------ceeeEEEEEEECC
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFD------------SKSTI-------------------GVEFQTRTVTINS 74 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~------------~~~~~-------------------~~~~~~~~~~~~~ 74 (203)
...++|+++|.+++|||||+++|++...... ...+. +.+.......+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 3569999999999999999999986531100 00110 1111111112222
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC----
Q 048709 75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA---- 150 (203)
Q Consensus 75 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---- 150 (203)
....+.+|||||++.|......++..+|++++|+|+++... .+...++..+... ...|+++++||+|+.+..+
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~~~~ 178 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL--GIKHIVVAINKMDLNGFDERVFE 178 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT--TCCEEEEEEECTTTTTSCHHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCeEEEEEEcCcCCcccHHHHH
Confidence 33578999999999998888889999999999999998532 2223344433332 1236999999999975211
Q ss_pred CCHHHHHHHHHHcC-----CeEEEEecCCCCCHHHH
Q 048709 151 VSAEDVVEFAEDQG-----LFFSEASALNGDNVDTA 181 (203)
Q Consensus 151 ~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~ 181 (203)
...+++.+++...+ ++++++||++|.|+.++
T Consensus 179 ~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 179 SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 12345566677777 68999999999999874
No 165
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.84 E-value=1.4e-21 Score=156.09 Aligned_cols=160 Identities=18% Similarity=0.103 Sum_probs=109.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC--------CCccC--CC-----CCcceeeEEEEEEECCEEEEEEEEeCCCchhhh
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKN--------EFCFD--SK-----STIGVEFQTRTVTINSKIIKAQIWDTAGQERYR 91 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~--------~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 91 (203)
..++|+++|.+++|||||+++|++. .+... .+ ...+.+.......++.....+.+|||||++.|.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~ 89 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI 89 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHH
Confidence 4699999999999999999999873 11100 00 012222222333343334678999999999998
Q ss_pred hhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCcccC---CCHHHHHHHHHHcC---
Q 048709 92 AVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR-IILIGNKSDLVDMWA---VSAEDVVEFAEDQG--- 164 (203)
Q Consensus 92 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~--- 164 (203)
.....++..+|++++|+|+++... .+...++..+.. .++| +++++||+|+.+... ...+++.+++...+
T Consensus 90 ~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~---~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (405)
T 2c78_A 90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPG 165 (405)
T ss_dssp HHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccc
Confidence 888889999999999999988543 233455554444 3677 889999999974211 11235566666655
Q ss_pred --CeEEEEecCCCCC------------------HHHHHHHHHHHHH
Q 048709 165 --LFFSEASALNGDN------------------VDTAFFRLLQEIY 190 (203)
Q Consensus 165 --~~~~~~sa~~~~~------------------i~~~~~~i~~~~~ 190 (203)
++++++||++|.| +.++++.+.+.+.
T Consensus 166 ~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 166 DEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp TTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred cCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 6899999999977 6666666665543
No 166
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.84 E-value=4.7e-21 Score=152.58 Aligned_cols=160 Identities=16% Similarity=0.087 Sum_probs=108.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCcc------C---CC-----CCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhh
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCF------D---SK-----STIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV 93 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~------~---~~-----~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 93 (203)
.++|+++|.+++|||||+++|++..... . .+ ...+.+.......++.....+.+|||||++.|...
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 5899999999999999999998731100 0 00 01122222222333333457899999999999888
Q ss_pred hHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCcccC---CCHHHHHHHHHHcC-----
Q 048709 94 TSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR-IILIGNKSDLVDMWA---VSAEDVVEFAEDQG----- 164 (203)
Q Consensus 94 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~----- 164 (203)
...++..+|++++|+|+++....+. ...+..+.. .++| +++++||+|+.+... ...+++.+++...+
T Consensus 83 ~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 158 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAANDGPMPQT-REHLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE 158 (397)
T ss_dssp HHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred HHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence 8888999999999999998432222 223333332 3677 689999999974211 12245666777665
Q ss_pred CeEEEEecCCCCC----------HHHHHHHHHHHHHH
Q 048709 165 LFFSEASALNGDN----------VDTAFFRLLQEIYA 191 (203)
Q Consensus 165 ~~~~~~sa~~~~~----------i~~~~~~i~~~~~~ 191 (203)
++++++||++|.| +.++++.|.+.+..
T Consensus 159 ~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred CcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 5899999998764 88888888776643
No 167
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.83 E-value=1.9e-21 Score=149.24 Aligned_cols=162 Identities=15% Similarity=0.136 Sum_probs=102.9
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCC------CCC----------------------ccee------------
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDS------KST----------------------IGVE------------ 64 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~------~~~----------------------~~~~------------ 64 (203)
....++|+|+|.+|+|||||+|+|++..+.+.. .++ .+.+
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 345689999999999999999999998874221 111 0000
Q ss_pred ---------eEEEEEEEC-CEEEEEEEEeCCCch-------------hhhhhhHhhhcCCcEEE-EEEeCCCHHHHHHHH
Q 048709 65 ---------FQTRTVTIN-SKIIKAQIWDTAGQE-------------RYRAVTSAYYRGALGAV-VVYDITKRQSFDHVA 120 (203)
Q Consensus 65 ---------~~~~~~~~~-~~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~ 120 (203)
.....+.+. .....+.+|||||.. .+..+...|+..++.++ +|+|+++..+.....
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 000000000 002478999999953 45566777888888776 799998754433322
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHH--cC-CeEEEEecCCCCCHHHHHHHHHHHH
Q 048709 121 RGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAED--QG-LFFSEASALNGDNVDTAFFRLLQEI 189 (203)
Q Consensus 121 ~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~sa~~~~~i~~~~~~i~~~~ 189 (203)
.++..+. ..+.|+++|+||+|+.+......+.+...... .+ .+++++||++|.|++++++++.+..
T Consensus 183 ~~~~~~~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 183 KIAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp HHHHHHC---TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred HHHHHhC---CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 3333332 35789999999999976433233322211011 12 3688899999999999999988754
No 168
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.83 E-value=4.3e-21 Score=159.79 Aligned_cols=154 Identities=18% Similarity=0.193 Sum_probs=100.8
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCC-------------------------------CCCcceeeEEEEEEECC
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDS-------------------------------KSTIGVEFQTRTVTINS 74 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 74 (203)
...++|+++|.+++|||||+++|++....... .+..+.+.....+..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-- 242 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-- 242 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC--
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec--
Confidence 34699999999999999999999875322111 011222222233333
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHH---HHHHHHHHHHHHhhcCCC-CcEEEEEeCCCCCcccC
Q 048709 75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQS---FDHVARGVEELRAHADSS-IRIILIGNKSDLVDMWA 150 (203)
Q Consensus 75 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~-~p~ivv~nK~D~~~~~~ 150 (203)
....+.||||||++.|......++..+|++|+|+|++++.. +....++...+......+ .|+++|+||+|+.+..+
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence 33578999999999999888899999999999999987421 100111112222122223 45999999999976322
Q ss_pred CC----HHHHHHHHHHc-----CCeEEEEecCCCCCHHHH
Q 048709 151 VS----AEDVVEFAEDQ-----GLFFSEASALNGDNVDTA 181 (203)
Q Consensus 151 ~~----~~~~~~~~~~~-----~~~~~~~sa~~~~~i~~~ 181 (203)
.. .+++..++... .++++++||++|.|+.++
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 22 23334444443 368999999999999865
No 169
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.83 E-value=3.2e-21 Score=155.23 Aligned_cols=150 Identities=19% Similarity=0.224 Sum_probs=101.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC--CCccC-----------------------------CCCCcceeeEEEEEEECCE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKN--EFCFD-----------------------------SKSTIGVEFQTRTVTINSK 75 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 75 (203)
..++|+++|.+++|||||+++|+.. .+... ..+..+.+.... .++..
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~--~~~~~ 82 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFM--RFETK 82 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------C--EEECS
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEE--EEecC
Confidence 4589999999999999999999864 22110 011122222222 23333
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHH-------HHHHHHHhhcCCCC-cEEEEEeCCCCCc
Q 048709 76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVA-------RGVEELRAHADSSI-RIILIGNKSDLVD 147 (203)
Q Consensus 76 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-------~~~~~~~~~~~~~~-p~ivv~nK~D~~~ 147 (203)
...+.+|||||+..|......++..+|++++|+|+++ .+|+... ..+..+.. .+. |+++++||+|+.+
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~---~~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKT---MGLDQLIVAVNKMDLTE 158 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHH---TTCTTCEEEEECGGGSS
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHH---cCCCeEEEEEEcccCCC
Confidence 4678999999999999888899999999999999998 5666432 22222222 233 5899999999976
Q ss_pred cc------CCCHHHHHHHHHHcC-----CeEEEEecCCCCCHHHHH
Q 048709 148 MW------AVSAEDVVEFAEDQG-----LFFSEASALNGDNVDTAF 182 (203)
Q Consensus 148 ~~------~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~~ 182 (203)
.. ....+++.+++...+ ++++++||++|.|+.+++
T Consensus 159 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 159 PPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 21 112355667777665 689999999999997543
No 170
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.83 E-value=3.4e-21 Score=156.19 Aligned_cols=155 Identities=17% Similarity=0.154 Sum_probs=90.8
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhc--CCCcc----------------------CC-------CCCcceeeEEEEEEECC
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTK--NEFCF----------------------DS-------KSTIGVEFQTRTVTINS 74 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~--~~~~~----------------------~~-------~~~~~~~~~~~~~~~~~ 74 (203)
...++|+++|..++|||||+++|+. +.+.. .. ....+.+.....+..++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 4569999999999999999999974 22110 00 01111222222233333
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHH---HHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCccc-
Q 048709 75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQ---SFDHVARGVEELRAHADSSIR-IILIGNKSDLVDMW- 149 (203)
Q Consensus 75 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~- 149 (203)
..+.||||||++.|......++..+|++|+|+|+++.. +|+...++...+......++| +++++||+|+....
T Consensus 121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence 57899999999999888888899999999999999852 332111222222222224677 99999999996421
Q ss_pred -----CCCHHHHHHHHHHc-------CCeEEEEecCCCCCHHHHH
Q 048709 150 -----AVSAEDVVEFAEDQ-------GLFFSEASALNGDNVDTAF 182 (203)
Q Consensus 150 -----~~~~~~~~~~~~~~-------~~~~~~~sa~~~~~i~~~~ 182 (203)
....+++.+++... .++++++||++|.|+.+++
T Consensus 199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 11223566666655 4679999999999998755
No 171
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.83 E-value=4.9e-20 Score=134.33 Aligned_cols=157 Identities=20% Similarity=0.166 Sum_probs=100.5
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCch----------hhhhhh
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE----------RYRAVT 94 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~ 94 (203)
.....+|+++|++|||||||+++|.+..+.....++.+.......+.+++ .+.+|||||.. .+....
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 34568999999999999999999998764333334545444333333333 46799999963 233333
Q ss_pred Hhhh---cCCcEEEEEEeCCCHHHHHH--HHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC--CCHHHHHHHHHHcC--C
Q 048709 95 SAYY---RGALGAVVVYDITKRQSFDH--VARGVEELRAHADSSIRIILIGNKSDLVDMWA--VSAEDVVEFAEDQG--L 165 (203)
Q Consensus 95 ~~~~---~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~--~ 165 (203)
..++ ..++++++++|++++.+... +..|+ .. .+.|++++.||+|+....+ ...+.+.+++...+ +
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~ 173 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---VD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV 173 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---HH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC
Confidence 3444 57899999999987544322 22222 11 4688999999999865321 12345555555554 5
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHH
Q 048709 166 FFSEASALNGDNVDTAFFRLLQEIY 190 (203)
Q Consensus 166 ~~~~~sa~~~~~i~~~~~~i~~~~~ 190 (203)
.++++|++++.|+++++++|.+.+.
T Consensus 174 ~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 174 QVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred ceEEEeecCCCCHHHHHHHHHHHHh
Confidence 6889999999999999999887653
No 172
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.82 E-value=3e-19 Score=134.69 Aligned_cols=127 Identities=16% Similarity=0.118 Sum_probs=86.5
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCcc-CCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhc-----
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCF-DSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYR----- 99 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~----- 99 (203)
...++|+++|.+|+|||||+|+|++..... ...+..+.......+..++. .+.+|||||+..+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGF--TINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTE--EEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCe--eEEEEECCCCCCcccchHHHHHHHHHH
Confidence 457999999999999999999999987532 22233344445555556664 7899999998776554444332
Q ss_pred ----CCcEEEEEEeCCCHHHHHHH-HHHHHHHHhhcCCC--CcEEEEEeCCCCCcccCCCHHH
Q 048709 100 ----GALGAVVVYDITKRQSFDHV-ARGVEELRAHADSS--IRIILIGNKSDLVDMWAVSAED 155 (203)
Q Consensus 100 ----~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~--~p~ivv~nK~D~~~~~~~~~~~ 155 (203)
.+|++++|++++... +... ..|+..+......+ .|+++|+||+|+...+....++
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~ 173 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYET 173 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHH
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHH
Confidence 789999999887643 2222 35566665554433 4899999999986443444433
No 173
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.82 E-value=2.4e-19 Score=142.67 Aligned_cols=161 Identities=16% Similarity=0.117 Sum_probs=113.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh----hhhhh---HhhhcCCc
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER----YRAVT---SAYYRGAL 102 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~---~~~~~~~d 102 (203)
.|+++|++|||||||+++|.+........+..+..+....+..++ ...+.+||+||... +..+. ...+..++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 479999999999999999998754333334444444555555543 24578999999632 11111 22356799
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 048709 103 GAVVVYDITKRQSFDHVARGVEELRAHAD--SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDT 180 (203)
Q Consensus 103 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 180 (203)
.+++++|++ ...+..+..+...+..... ...|.++++||+|+... ...+++.+.+...+++++.+||+++.|+++
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e 314 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPA 314 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence 999999997 4556666666555544332 35789999999999763 233455556666788999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 048709 181 AFFRLLQEIYALSK 194 (203)
Q Consensus 181 ~~~~i~~~~~~~~~ 194 (203)
++++|.+.+.....
T Consensus 315 L~~~i~~~l~~~~~ 328 (416)
T 1udx_A 315 LKEALHALVRSTPP 328 (416)
T ss_dssp HHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHhccc
Confidence 99999999876443
No 174
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.82 E-value=4.9e-22 Score=161.16 Aligned_cols=152 Identities=17% Similarity=0.195 Sum_probs=105.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV 106 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 106 (203)
+..+|+++|++++|||||+++|.+..+.....+..+.+.....+..++ ..+.||||||++.|..++...+..+|++++
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 568999999999999999999987655443333333332222233333 467899999999999988888999999999
Q ss_pred EEeCCC---HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc--CCCHH--HHHHHHHHc--CCeEEEEecCCCCC
Q 048709 107 VYDITK---RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW--AVSAE--DVVEFAEDQ--GLFFSEASALNGDN 177 (203)
Q Consensus 107 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~--~~~~~~~~~--~~~~~~~sa~~~~~ 177 (203)
|+|+++ +++.+.+ ..+.. .++|+++++||+|+.+.. .+..+ +...++..+ .++++++||++|.|
T Consensus 81 VVda~~g~~~qT~e~l----~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~g 153 (501)
T 1zo1_I 81 VVAADDGVMPQTIEAI----QHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTG 153 (501)
T ss_dssp EEETTTBSCTTTHHHH----HHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTT
T ss_pred EeecccCccHHHHHHH----HHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccC
Confidence 999987 3443332 22222 478999999999997521 11100 000011122 26899999999999
Q ss_pred HHHHHHHHHH
Q 048709 178 VDTAFFRLLQ 187 (203)
Q Consensus 178 i~~~~~~i~~ 187 (203)
++++++++..
T Consensus 154 I~eLle~I~~ 163 (501)
T 1zo1_I 154 IDELLDAILL 163 (501)
T ss_dssp CTTHHHHTTT
T ss_pred cchhhhhhhh
Confidence 9999999875
No 175
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.81 E-value=4.4e-20 Score=160.04 Aligned_cols=161 Identities=19% Similarity=0.104 Sum_probs=108.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCC-------cc-------CCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEF-------CF-------DSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR 91 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~-------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 91 (203)
...++|+++|.+++|||||+++|++... .. ....+.+.+.....+.++.....+.||||||++.|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 3569999999999999999999986310 00 000122222222223333344678999999999998
Q ss_pred hhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCcccC---CCHHHHHHHHHHcC---
Q 048709 92 AVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR-IILIGNKSDLVDMWA---VSAEDVVEFAEDQG--- 164 (203)
Q Consensus 92 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~--- 164 (203)
.....++..+|++|+|+|+++.... +...++..+.. .++| +++++||+|+.+... ...+++.+++...+
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~---lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~ 449 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQ---VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPG 449 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHH---HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHH---cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccc
Confidence 8888899999999999999985322 22334444333 2677 789999999975211 12245666776665
Q ss_pred --CeEEEEecCCC--------CCHHHHHHHHHHHHH
Q 048709 165 --LFFSEASALNG--------DNVDTAFFRLLQEIY 190 (203)
Q Consensus 165 --~~~~~~sa~~~--------~~i~~~~~~i~~~~~ 190 (203)
++++++||++| .|+.++++.|.+.+.
T Consensus 450 ~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 450 DDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 68999999999 457888887776554
No 176
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.81 E-value=1.9e-20 Score=151.51 Aligned_cols=150 Identities=19% Similarity=0.171 Sum_probs=101.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC--CCccC-----------------------------CCCCcceeeEEEEEEECCE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKN--EFCFD-----------------------------SKSTIGVEFQTRTVTINSK 75 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 75 (203)
..++|+++|.+++|||||+++|++. .+... .....+.+.....+.. .
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~--~ 83 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET--P 83 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC--S
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec--C
Confidence 4699999999999999999999863 11100 0011222222223333 3
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHH---HHH---HHHHHHHHHHhhcCCCCc-EEEEEeCCCCCcc
Q 048709 76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQ---SFD---HVARGVEELRAHADSSIR-IILIGNKSDLVDM 148 (203)
Q Consensus 76 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~ 148 (203)
...+.||||||+..|......++..+|++++|+|+++.. +|+ +....+..+.. .++| +++++||+|+.+.
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGTT
T ss_pred CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEccccccC
Confidence 357899999999999988888999999999999999753 221 22233232222 3555 8999999999731
Q ss_pred cC----CCHHHHHHHHHHcC-----CeEEEEecCCCCCHHHH
Q 048709 149 WA----VSAEDVVEFAEDQG-----LFFSEASALNGDNVDTA 181 (203)
Q Consensus 149 ~~----~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~ 181 (203)
.. ...+++.+++...+ ++++++||++|.|+.++
T Consensus 161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 11 12244556666555 68999999999998744
No 177
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.80 E-value=7.5e-19 Score=148.46 Aligned_cols=163 Identities=15% Similarity=0.168 Sum_probs=107.5
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCC-CCCcce--------eeEEEE---------------------------
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDS-KSTIGV--------EFQTRT--------------------------- 69 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~-~~~~~~--------~~~~~~--------------------------- 69 (203)
...++|+|+|.+|+|||||+|+|++.++.+.. .+++.. ......
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 45799999999999999999999998765432 233210 000000
Q ss_pred ------------------EEECCEE--EEEEEEeCCCchhh---hhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHH
Q 048709 70 ------------------VTINSKI--IKAQIWDTAGQERY---RAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEEL 126 (203)
Q Consensus 70 ------------------~~~~~~~--~~~~l~D~~g~~~~---~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 126 (203)
+..+... ..+.||||||.... ......++..+|++++|+|++++.+......|...+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l 226 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI 226 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence 0000000 25889999996553 345567889999999999999876666654443333
Q ss_pred HhhcCCCCcEEEEEeCCCCCcccCCCHH----------HHHHH----HH-H--------cCCeEEEEecC----------
Q 048709 127 RAHADSSIRIILIGNKSDLVDMWAVSAE----------DVVEF----AE-D--------QGLFFSEASAL---------- 173 (203)
Q Consensus 127 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~----------~~~~~----~~-~--------~~~~~~~~sa~---------- 173 (203)
.. .+.|+++|+||+|+........+ .+.+. .. . ...+++++||+
T Consensus 227 ~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~ 303 (695)
T 2j69_A 227 KG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP 303 (695)
T ss_dssp TT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT
T ss_pred Hh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc
Confidence 22 36789999999998654311111 12211 11 1 12469999999
Q ss_pred ----CCCCHHHHHHHHHHHHHH
Q 048709 174 ----NGDNVDTAFFRLLQEIYA 191 (203)
Q Consensus 174 ----~~~~i~~~~~~i~~~~~~ 191 (203)
++.|+++++..+.+.+..
T Consensus 304 ~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 304 QADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp TCCCTTSSHHHHHHHHHHHHHH
T ss_pred hhhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887755
No 178
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.79 E-value=7.5e-20 Score=143.99 Aligned_cols=157 Identities=12% Similarity=0.131 Sum_probs=104.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEE--------------------------------------
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTR-------------------------------------- 68 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~-------------------------------------- 68 (203)
...+|+|+|.+|||||||+|+|++..+.+....+.+......
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 345999999999999999999999876433322221111100
Q ss_pred --------------EEEE-CCEEEEEEEEeCCCchhh-------------hhhhHhhhcCCcEEEEEEeCCCHHHHHHHH
Q 048709 69 --------------TVTI-NSKIIKAQIWDTAGQERY-------------RAVTSAYYRGALGAVVVYDITKRQSFDHVA 120 (203)
Q Consensus 69 --------------~~~~-~~~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 120 (203)
.+.+ ......+.+|||||...+ ..+...|+.++|++++|++..+..... .
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~ 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence 0000 001125789999997665 556778999999999999875432211 2
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709 121 RGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185 (203)
Q Consensus 121 ~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 185 (203)
.|+..+......+.|+++|+||+|+........+.+..+....+.+|+.++++.+.++++.+..+
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHH
Confidence 34444444444678999999999998654555554554455567889999999988877655443
No 179
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.79 E-value=5.1e-19 Score=134.01 Aligned_cols=125 Identities=12% Similarity=0.076 Sum_probs=81.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCC-CCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhH-------hh
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDS-KSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTS-------AY 97 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~-------~~ 97 (203)
...++|+++|.+|+|||||+|+|++..+.... .+..+.......+..++ ..+.+|||||...+..... .+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 45799999999999999999999988764222 12222233333333443 5689999999765542211 12
Q ss_pred --hcCCcEEEEEEeCCCHHHHHHH-HHHHHHHHhhcCCC--CcEEEEEeCCCCCcccCCCH
Q 048709 98 --YRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSS--IRIILIGNKSDLVDMWAVSA 153 (203)
Q Consensus 98 --~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~--~p~ivv~nK~D~~~~~~~~~ 153 (203)
...+|++++|+|++.. ++... ..|+..+....+.+ .|+++|+||+|+...+....
T Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~ 174 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPY 174 (270)
T ss_dssp TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCH
T ss_pred hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCH
Confidence 3478999999988653 22222 35666665554333 69999999999875443333
No 180
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.79 E-value=7e-19 Score=135.98 Aligned_cols=163 Identities=15% Similarity=0.150 Sum_probs=97.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceee---EEEE---------------------------------
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEF---QTRT--------------------------------- 69 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~---~~~~--------------------------------- 69 (203)
....+|+|+|.+|+|||||+|+|++..+.+......+..+ ....
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 4568999999999999999999999876322210000000 0000
Q ss_pred ---------------------EE-ECCEEEEEEEEeCCCchh-------------hhhhhHhhhcCCcEEEEEEeCCCHH
Q 048709 70 ---------------------VT-INSKIIKAQIWDTAGQER-------------YRAVTSAYYRGALGAVVVYDITKRQ 114 (203)
Q Consensus 70 ---------------------~~-~~~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~ 114 (203)
+. ......++.+|||||... +......++..+|++++|+|+.+..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 00 000113689999999643 4556677899999999999974321
Q ss_pred -HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecC---C---CCCHHHHHHHHHH
Q 048709 115 -SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASAL---N---GDNVDTAFFRLLQ 187 (203)
Q Consensus 115 -s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~---~---~~~i~~~~~~i~~ 187 (203)
.......++..+ ...+.|+++|+||+|+........+.+.......+..++++++. + +.|+.++++.+.+
T Consensus 182 ~~~~~~~~i~~~~---~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~ 258 (315)
T 1jwy_B 182 LANSDALQLAKEV---DPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEIL 258 (315)
T ss_dssp STTCSHHHHHHHH---CSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHH
T ss_pred hhhhHHHHHHHHh---CCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHH
Confidence 101111222222 22578999999999997643322332221111122456666554 4 7899999999888
Q ss_pred HHHH
Q 048709 188 EIYA 191 (203)
Q Consensus 188 ~~~~ 191 (203)
.+..
T Consensus 259 ~~~~ 262 (315)
T 1jwy_B 259 YFKN 262 (315)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 7754
No 181
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.79 E-value=4.8e-21 Score=159.03 Aligned_cols=149 Identities=26% Similarity=0.241 Sum_probs=81.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCc-------------------------------cCCCCCcceeeEEEEEEECC
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFC-------------------------------FDSKSTIGVEFQTRTVTINS 74 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 74 (203)
...++|+++|.+++|||||+++|+..... .+..+..+.+ .....+..
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid--~~~~~~~~ 252 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMD--VASTTFES 252 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEE--eeEEEEEe
Confidence 45689999999999999999999642100 0001122222 22222333
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHH---HH---HHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCc
Q 048709 75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQ---SF---DHVARGVEELRAHADSSIR-IILIGNKSDLVD 147 (203)
Q Consensus 75 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~ 147 (203)
....+.||||||+..|......++..+|++|+|+|++++. .+ .+....+..+.. .++| +|+|+||+|+.+
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLMS 329 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGGT
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEecccccc
Confidence 4467899999999999888888899999999999998531 11 111122222222 3555 899999999875
Q ss_pred ccCC----CHHHHHHHH-HHcCC-----eEEEEecCCCCCHH
Q 048709 148 MWAV----SAEDVVEFA-EDQGL-----FFSEASALNGDNVD 179 (203)
Q Consensus 148 ~~~~----~~~~~~~~~-~~~~~-----~~~~~sa~~~~~i~ 179 (203)
.... ..+++..++ ...++ +++++||++|.|+.
T Consensus 330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 2111 123344444 34444 79999999999997
No 182
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.79 E-value=1.2e-18 Score=146.67 Aligned_cols=115 Identities=11% Similarity=0.086 Sum_probs=80.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCC------------------CCCcceeeEEEEEEECCEEEEEEEEeCCCc
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDS------------------KSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 87 (203)
....+|+++|+.|+|||||+++|++....... ....+.......+... .+.+++|||||+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~~nliDTpG~ 84 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--GHRVFLLDAPGY 84 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--TEEEEEEECCCS
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--CEEEEEEeCCCc
Confidence 35689999999999999999999843211000 0111222233333333 467899999999
Q ss_pred hhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 048709 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV 146 (203)
Q Consensus 88 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 146 (203)
..|......+++.+|++++|+|+++...... ..++..+.. .++|+++++||+|+.
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH---ccCCEEEEecCCchh
Confidence 9998888899999999999999987533222 244444443 478999999999986
No 183
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.77 E-value=5.9e-18 Score=142.94 Aligned_cols=117 Identities=16% Similarity=0.143 Sum_probs=82.0
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcC--CC------ccC----------CCCCcceeeEEEEEEECCEEEEEEEEeCCC
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKN--EF------CFD----------SKSTIGVEFQTRTVTINSKIIKAQIWDTAG 86 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~--~~------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 86 (203)
.....+|+|+|.+|+|||||+++|+.. .+ ... .....+.......+...+ ..+++|||||
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liDTPG 86 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDTPG 86 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEECCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEECcC
Confidence 456799999999999999999999831 11 000 011112222223333343 6789999999
Q ss_pred chhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709 87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147 (203)
Q Consensus 87 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 147 (203)
+..|......++..+|++++|+|+++..+......|. .+.. .++|+++++||+|+..
T Consensus 87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEK---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH---TTCCEEEEEECTTSTT
T ss_pred ccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHH---cCCCEEEEEECCCccc
Confidence 9999888889999999999999999876665554443 3333 4789999999999864
No 184
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.77 E-value=2.4e-18 Score=141.10 Aligned_cols=116 Identities=16% Similarity=0.108 Sum_probs=77.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCC--------------------CCCccee--eEEEEEEECCEEEEEEEEe
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDS--------------------KSTIGVE--FQTRTVTINSKIIKAQIWD 83 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~--------------------~~~~~~~--~~~~~~~~~~~~~~~~l~D 83 (203)
...++|+++|.+|+|||||+++|+...-.... ..+.+.+ .....+... ...+++||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~--~~~i~liD 88 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYH--DCLVNLLD 88 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEET--TEEEEEEC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEEC--CeEEEEEE
Confidence 34689999999999999999999863110000 0011111 111222333 36789999
Q ss_pred CCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709 84 TAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147 (203)
Q Consensus 84 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 147 (203)
|||+..|......++..+|++|+|+|+++..... ...++..+. ..++|+++++||+|+..
T Consensus 89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~~---~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVTR---LRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHT---TTTCCEEEEEECTTSCC
T ss_pred CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHHH---HcCCCEEEEEcCcCCcc
Confidence 9999998888888999999999999998753221 222222222 25789999999999864
No 185
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.77 E-value=1.7e-19 Score=138.46 Aligned_cols=162 Identities=15% Similarity=0.236 Sum_probs=86.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcC-CCccCCC--------CCcceeeEEEEEEECCEEEEEEEEeCCCc-------hh
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKN-EFCFDSK--------STIGVEFQTRTVTINSKIIKAQIWDTAGQ-------ER 89 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-------~~ 89 (203)
.-.++|+|+|++|+|||||+++|++. .++.... ++............++....+.+||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 34589999999999999999999876 3322211 11111111111122334467899999997 44
Q ss_pred hhhhhH-------hhhcC-------------CcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc
Q 048709 90 YRAVTS-------AYYRG-------------ALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW 149 (203)
Q Consensus 90 ~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 149 (203)
+..+.. .++.. +++++++.+.+.. +++.+. ...+... ..+.|+++|+||.|+...+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~--~~~l~~l-~~~~~iilV~~K~Dl~~~~ 171 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLD--VAFMKAI-HNKVNIVPVIAKADTLTLK 171 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHH--HHHHHHH-TTTSCEEEEECCGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHH--HHHHHHH-HhcCCEEEEEEeCCCCCHH
Confidence 444443 34322 2345665554321 122221 1222222 2467899999999997543
Q ss_pred CC--CHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709 150 AV--SAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 150 ~~--~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~ 192 (203)
++ ..+++.+++..++++++++||+++ +++++|.++.+.+...
T Consensus 172 e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 172 ERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence 32 245778888999999999999999 9999999999888653
No 186
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.75 E-value=7.1e-19 Score=139.58 Aligned_cols=85 Identities=24% Similarity=0.239 Sum_probs=48.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEE---------------------EECC-EEEEEEEEeCCC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTV---------------------TINS-KIIKAQIWDTAG 86 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~-~~~~~~l~D~~g 86 (203)
++|+++|.+|+|||||+|+|++........+..+.+...... .+++ ..+.+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 589999999999999999999887433333333333222221 1232 357899999999
Q ss_pred chhh----hhhhH---hhhcCCcEEEEEEeCCCH
Q 048709 87 QERY----RAVTS---AYYRGALGAVVVYDITKR 113 (203)
Q Consensus 87 ~~~~----~~~~~---~~~~~~d~~i~v~d~~~~ 113 (203)
.... ..+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7542 22222 357899999999999874
No 187
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.75 E-value=1.2e-18 Score=138.74 Aligned_cols=159 Identities=14% Similarity=0.204 Sum_probs=80.5
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCc-cCC-------CCCcceeeEEEEEEECCEEEEEEEEeCCCchhh-------
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFC-FDS-------KSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY------- 90 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~------- 90 (203)
.-.++|+|+|++|+|||||++.|++.... ... .++.........+...+....+.+||++|...+
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 34588999999999999999999987653 211 111111111111122333457899999996543
Q ss_pred hhh------------------hHhhhcCCcE--EEEEEeCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCccc
Q 048709 91 RAV------------------TSAYYRGALG--AVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDMW 149 (203)
Q Consensus 91 ~~~------------------~~~~~~~~d~--~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 149 (203)
..+ ...++.++++ ++++.+.+. .++.... .|+..+. .++|+|+|+||+|+...+
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPE 183 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHH
Confidence 111 1223445544 444444331 1222222 4444443 378999999999987644
Q ss_pred CCCH--HHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 048709 150 AVSA--EDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189 (203)
Q Consensus 150 ~~~~--~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~ 189 (203)
++.. +++.+.+...+++++++|++++.++.+++..+.+.+
T Consensus 184 ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 184 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 4443 567778888899999999999999998887776654
No 188
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.74 E-value=8.3e-17 Score=136.14 Aligned_cols=118 Identities=16% Similarity=0.067 Sum_probs=81.5
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcC--CCcc------CC----------CCCcceeeEEEEEEEC-----CEEEEEEEE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKN--EFCF------DS----------KSTIGVEFQTRTVTIN-----SKIIKAQIW 82 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~--~~~~------~~----------~~~~~~~~~~~~~~~~-----~~~~~~~l~ 82 (203)
....+|+|+|..|+|||||+++|+.. .+.. .. ....+.......+.++ +..+.++||
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 45689999999999999999999742 1110 00 0111122222223222 233789999
Q ss_pred eCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709 83 DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147 (203)
Q Consensus 83 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 147 (203)
||||+..|......+++.+|++|+|+|+++.........| ..+.. .++|+++++||+|+..
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK---YKVPRIAFVNKMDRMG 148 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH---cCCCEEEEEeCCCccc
Confidence 9999999988888899999999999999986554443333 33322 4789999999999864
No 189
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.74 E-value=7.5e-17 Score=136.25 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=81.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhc--CCCccC----C------------CCCcceeeEEEEEEECCEEEEEEEEeCCCc
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTK--NEFCFD----S------------KSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~--~~~~~~----~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 87 (203)
.+..+|+|+|.+|+|||||+++|+. +.+... . .+..+.......+..++ ..++||||||+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 85 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPGH 85 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcCC
Confidence 4568999999999999999999984 222100 0 01111222223334443 57899999999
Q ss_pred hhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709 88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147 (203)
Q Consensus 88 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 147 (203)
..|......+++.+|++++|+|+++..+......| ..+.. .++|+++++||+|+..
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~-~~~~~---~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVW-RQATT---YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHH-HHHHH---TTCCEEEEEECTTSTT
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHH-HHHHH---cCCCEEEEEECCCccc
Confidence 98888888899999999999999986665555444 33333 4789999999999864
No 190
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.73 E-value=1.2e-18 Score=133.91 Aligned_cols=134 Identities=16% Similarity=0.076 Sum_probs=107.7
Q ss_pred HHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHH-HHHHHH
Q 048709 43 QILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQ-SFDHVA 120 (203)
Q Consensus 43 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 120 (203)
+|+.+++.+.+. ..+.+|.+..+. ..+..++ ++.+||+ ++.++.+++.+++++|++++|+|++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 578888888887 777888884443 3322222 6889999 8889999999999999999999999987 788888
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcC--CeEEEEecCCCCCHHHHHHHHHH
Q 048709 121 RGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQG--LFFSEASALNGDNVDTAFFRLLQ 187 (203)
Q Consensus 121 ~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~~~~~i~~ 187 (203)
.|+..+.. .++|+++|+||+|+.+.+. .+++.+++..+. +++++|||++|.|++++|..+..
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~--v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchh--HHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 89887654 4789999999999976432 245677777777 89999999999999999987653
No 191
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.71 E-value=1.6e-18 Score=136.07 Aligned_cols=159 Identities=14% Similarity=0.126 Sum_probs=94.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeE---------------------------------------
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQ--------------------------------------- 66 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~--------------------------------------- 66 (203)
....+|+|+|.+|||||||+|+|++.++.+......+..+.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 34689999999999999999999998864222111000000
Q ss_pred ----------EEEEEEC-CEEEEEEEEeCCCch-------------hhhhhhHhhhcCCc-EEEEEEeCCCHHHHHHHHH
Q 048709 67 ----------TRTVTIN-SKIIKAQIWDTAGQE-------------RYRAVTSAYYRGAL-GAVVVYDITKRQSFDHVAR 121 (203)
Q Consensus 67 ----------~~~~~~~-~~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~ 121 (203)
...+.+. .....+.||||||.. .+..+...|+...+ ++++|++++....-..
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~--- 185 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD--- 185 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCH---
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhH---
Confidence 0001110 012468999999952 34556667776665 4555666654222111
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHH--HHHcC-CeEEEEecCCCCCHHHHHHHHHH
Q 048709 122 GVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEF--AEDQG-LFFSEASALNGDNVDTAFFRLLQ 187 (203)
Q Consensus 122 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~--~~~~~-~~~~~~sa~~~~~i~~~~~~i~~ 187 (203)
+...+......+.|+++|+||+|+.+......+.+... ....+ .+++++||+++.|++++++++.+
T Consensus 186 ~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 186 ALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 11222333336789999999999976433222221110 00122 25788999999999999998876
No 192
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.70 E-value=3.7e-16 Score=121.95 Aligned_cols=146 Identities=19% Similarity=0.102 Sum_probs=91.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCE---------------EEEEEEEeCCCchhhhh
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSK---------------IIKAQIWDTAGQERYRA 92 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~~~ 92 (203)
.++|+++|.+|+|||||+|+|++........+..+..+....+.+++. ...+.+|||||...+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 378999999999999999999987754333343333333334444432 14689999999765431
Q ss_pred ----h---hHhhhcCCcEEEEEEeCCCH----------HHHHHHHHHHHH------------------------------
Q 048709 93 ----V---TSAYYRGALGAVVVYDITKR----------QSFDHVARGVEE------------------------------ 125 (203)
Q Consensus 93 ----~---~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~------------------------------ 125 (203)
+ ...+++.+|++++|+|+++. +.++++..+..+
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~ 161 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFE 161 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHH
Confidence 2 23457999999999999851 122221110000
Q ss_pred ----------HH-------------------hh-cCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecC
Q 048709 126 ----------LR-------------------AH-ADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASAL 173 (203)
Q Consensus 126 ----------~~-------------------~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 173 (203)
+. .. ....+|+++++|+.|..-......+.+++++...+.+++.+||+
T Consensus 162 ~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~ 239 (363)
T 1jal_A 162 LSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA 239 (363)
T ss_dssp HHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred HHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechH
Confidence 10 00 11348999999999864211233567788888889999999965
No 193
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.69 E-value=2.2e-17 Score=121.26 Aligned_cols=155 Identities=14% Similarity=0.066 Sum_probs=95.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccC------CCCCcce--------eeEEEEEEEC----------------CEE
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFD------SKSTIGV--------EFQTRTVTIN----------------SKI 76 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~------~~~~~~~--------~~~~~~~~~~----------------~~~ 76 (203)
...+|+++|.+|||||||+++|........ ..+..+. ......+... ...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 357999999999999999999986421110 0111000 0011111110 012
Q ss_pred EEEEEEeCCCchhhhhhhHhhh-cCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHH
Q 048709 77 IKAQIWDTAGQERYRAVTSAYY-RGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAED 155 (203)
Q Consensus 77 ~~~~l~D~~g~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 155 (203)
..+.+|||+|+.. .+.++ ...+.+++|+|+.+.... ...+... .+.|+++++||+|+.+......++
T Consensus 109 ~d~iiidt~G~~~----~~~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~ 176 (221)
T 2wsm_A 109 CDLLLIENVGNLI----CPVDFDLGENYRVVMVSVTEGDDV--VEKHPEI------FRVADLIVINKVALAEAVGADVEK 176 (221)
T ss_dssp CSEEEEEEEEBSS----GGGGCCCSCSEEEEEEEGGGCTTH--HHHCHHH------HHTCSEEEEECGGGHHHHTCCHHH
T ss_pred CCEEEEeCCCCCC----CCchhccccCcEEEEEeCCCcchh--hhhhhhh------hhcCCEEEEecccCCcchhhHHHH
Confidence 4678999998511 11111 256789999998765321 1111111 146789999999997543356677
Q ss_pred HHHHHHHc--CCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q 048709 156 VVEFAEDQ--GLFFSEASALNGDNVDTAFFRLLQEIYALS 193 (203)
Q Consensus 156 ~~~~~~~~--~~~~~~~sa~~~~~i~~~~~~i~~~~~~~~ 193 (203)
+.+.+... .++++++||++|.|++++++++.+.+....
T Consensus 177 ~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 177 MKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp HHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred HHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 77776654 478999999999999999999998876544
No 194
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.69 E-value=1.7e-17 Score=130.30 Aligned_cols=104 Identities=12% Similarity=0.020 Sum_probs=70.4
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCC--CHH
Q 048709 77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAV--SAE 154 (203)
Q Consensus 77 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~ 154 (203)
+.+.||||||... .....+..+|++++|+|....+....+.. .-...|+++|+||+|+.+.... ..+
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~--------~~~~~p~ivVlNK~Dl~~~~~~~~~~~ 240 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK--------GVLELADIVVVNKADGEHHKEARLAAR 240 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT--------TSGGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH--------hHhhcCCEEEEECCCCcChhHHHHHHH
Confidence 5789999999432 23345689999999999876544322211 0124588999999998652111 111
Q ss_pred HHHHHHH-------HcCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 048709 155 DVVEFAE-------DQGLFFSEASALNGDNVDTAFFRLLQEIYA 191 (203)
Q Consensus 155 ~~~~~~~-------~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~ 191 (203)
++.+... .++.+++++||++|.|+++++++|.+.+..
T Consensus 241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 2222221 125789999999999999999999988765
No 195
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.67 E-value=4.7e-16 Score=128.08 Aligned_cols=117 Identities=15% Similarity=0.138 Sum_probs=80.8
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcC--C----------------C----ccCCCCCcceeeEEEEEEECCEEEEEEEE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKN--E----------------F----CFDSKSTIGVEFQTRTVTINSKIIKAQIW 82 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~--~----------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (203)
..+..+|+|+|+.++|||||..+|+.. . + ..+..+..++......+.+.+ ..++|+
T Consensus 28 ~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlI 105 (548)
T 3vqt_A 28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLL 105 (548)
T ss_dssp HHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEE
T ss_pred ccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEE
Confidence 345689999999999999999998521 0 0 111122223333334444544 578999
Q ss_pred eCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709 83 DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147 (203)
Q Consensus 83 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 147 (203)
||||+..|..-....++-+|++|+|+|+...-.-+...-| ..+.+ .++|.++++||+|...
T Consensus 106 DTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~---~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 106 DTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM---RATPVMTFVNKMDREA 166 (548)
T ss_dssp CCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH---TTCCEEEEEECTTSCC
T ss_pred eCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH---hCCceEEEEecccchh
Confidence 9999999988888889999999999999985433333333 44444 4899999999999864
No 196
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.65 E-value=1.8e-18 Score=127.47 Aligned_cols=154 Identities=15% Similarity=0.097 Sum_probs=91.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeE------------EEEEEEC-CE------------------
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQ------------TRTVTIN-SK------------------ 75 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~------------------ 75 (203)
..++|+|+|.+|||||||+++|+...+.....++.+.++. ...+.++ +.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4589999999999999999999876543322222222221 1111111 10
Q ss_pred -EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHH
Q 048709 76 -IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAE 154 (203)
Q Consensus 76 -~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 154 (203)
...+.++|++|.-... ..+-...+..+.++|+........ ..... ...|.++|+||+|+.+......+
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGI------MKTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHH------HTTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhH------hhcCCEEEEeccccCchhHHHHH
Confidence 0134555555521100 011122344566666432111000 00011 13578999999999764345677
Q ss_pred HHHHHHHHc--CCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 048709 155 DVVEFAEDQ--GLFFSEASALNGDNVDTAFFRLLQEIYA 191 (203)
Q Consensus 155 ~~~~~~~~~--~~~~~~~sa~~~~~i~~~~~~i~~~~~~ 191 (203)
++.+++... +++++++||++|.|++++|+++.+.+..
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 777777654 6789999999999999999999887754
No 197
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1.2e-14 Score=114.07 Aligned_cols=153 Identities=16% Similarity=0.105 Sum_probs=101.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh-------hhhHhhhc
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR-------AVTSAYYR 99 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~ 99 (203)
...+|+++|.||+|||||+|+|++........+.++.++....+.+++. +++++||||...-. ...-..++
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~--~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA--KIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE--EEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc--EEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 3479999999999999999999998877666688888888888888874 57899999953211 11224578
Q ss_pred CCcEEEEEEeCCCHHHHH-HHHHHHHHHHhhcCCCCcEEEEEeCCCCCc--------ccCCCHHHHHHHHHHcCCeEEEE
Q 048709 100 GALGAVVVYDITKRQSFD-HVARGVEELRAHADSSIRIILIGNKSDLVD--------MWAVSAEDVVEFAEDQGLFFSEA 170 (203)
Q Consensus 100 ~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 170 (203)
.+|++++|+|++++.... .+...+...... -...|.++++||.|... ......+++..+...+.+.--++
T Consensus 149 ~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~-l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv 227 (376)
T 4a9a_A 149 TCNLLFIILDVNKPLHHKQIIEKELEGVGIR-LNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEI 227 (376)
T ss_dssp HCSEEEEEEETTSHHHHHHHHHHHHHHTTEE-ETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEE
T ss_pred hcCccccccccCccHHHHHHHHHHHHHhhHh-hccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCe
Confidence 899999999999874322 222222221111 14567889999999742 12355667777766665432233
Q ss_pred ecCCCCCHHHHH
Q 048709 171 SALNGDNVDTAF 182 (203)
Q Consensus 171 sa~~~~~i~~~~ 182 (203)
-...+...+++.
T Consensus 228 ~~~~nv~eddl~ 239 (376)
T 4a9a_A 228 AFRCDATVDDLI 239 (376)
T ss_dssp EECSCCCHHHHH
T ss_pred eecccCCHHHHH
Confidence 333444555444
No 198
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.63 E-value=1.4e-16 Score=124.71 Aligned_cols=103 Identities=12% Similarity=0.001 Sum_probs=63.1
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHH
Q 048709 77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDV 156 (203)
Q Consensus 77 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 156 (203)
+.+.++||+|.... .......+|++++|+|++.+.....+.. .+ ...|.++|+||+|+.+.... ....
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~~ 234 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRIQ 234 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHHH
Confidence 46789999995321 2345678999999999987543322211 11 24578999999998642110 0112
Q ss_pred HHHHH----------HcCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 048709 157 VEFAE----------DQGLFFSEASALNGDNVDTAFFRLLQEIYA 191 (203)
Q Consensus 157 ~~~~~----------~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~ 191 (203)
..+.. .+..+++.+||++|.|+++++++|.+.+..
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 22211 124578999999999999999999887643
No 199
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.63 E-value=3.4e-16 Score=129.05 Aligned_cols=117 Identities=22% Similarity=0.278 Sum_probs=80.3
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCc---cCCCCCcceeeEEEEEEEC----------------------------
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFC---FDSKSTIGVEFQTRTVTIN---------------------------- 73 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~---------------------------- 73 (203)
....++|+|+|.+|+|||||+|+|++..+. ....++++. . ..+..+
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~-~--~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~ 138 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC-F--VAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNT 138 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS-E--EEEECCSSSEEECCC------------------C
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce-E--EEEEECCcccccCCceeeecCcccHHHHhhhccc
Confidence 446799999999999999999999998764 222232211 0 000000
Q ss_pred ---CEE---------EEEEEEeCCCchh-----------hhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhc
Q 048709 74 ---SKI---------IKAQIWDTAGQER-----------YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHA 130 (203)
Q Consensus 74 ---~~~---------~~~~l~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 130 (203)
+.. ..+.||||||... +......++..+|++++|+|+++.........++..+..
T Consensus 139 ~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-- 216 (550)
T 2qpt_A 139 FLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG-- 216 (550)
T ss_dssp CCTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT--
T ss_pred ccccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh--
Confidence 000 2588999999764 456667788999999999999875333344455544432
Q ss_pred CCCCcEEEEEeCCCCCc
Q 048709 131 DSSIRIILIGNKSDLVD 147 (203)
Q Consensus 131 ~~~~p~ivv~nK~D~~~ 147 (203)
.+.|+++|+||+|+..
T Consensus 217 -~~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 217 -HEDKIRVVLNKADMVE 232 (550)
T ss_dssp -CGGGEEEEEECGGGSC
T ss_pred -cCCCEEEEEECCCccC
Confidence 4688999999999875
No 200
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.63 E-value=4.9e-15 Score=116.24 Aligned_cols=152 Identities=16% Similarity=0.117 Sum_probs=93.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECC-------------------EEEEEEEEeCCCchh
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINS-------------------KIIKAQIWDTAGQER 89 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~l~D~~g~~~ 89 (203)
++|+++|.+|+|||||+|+|++........+..+.........+++ ....+.+|||||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 6899999999999999999998653222223333333333333321 235789999999765
Q ss_pred hh-------hhhHhhhcCCcEEEEEEeCCCH----------HHHHHHHHH---H--------------------------
Q 048709 90 YR-------AVTSAYYRGALGAVVVYDITKR----------QSFDHVARG---V-------------------------- 123 (203)
Q Consensus 90 ~~-------~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~---~-------------------------- 123 (203)
.. .....+++.+|++++|+|+++. +...++..+ +
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~ 161 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL 161 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence 42 1233468999999999999751 111111000 0
Q ss_pred ------HH----HHh-------------------hc-CCCCcEEEEEeCCCCC--cc-cCCCHHHHHHHHHHcCCeEEEE
Q 048709 124 ------EE----LRA-------------------HA-DSSIRIILIGNKSDLV--DM-WAVSAEDVVEFAEDQGLFFSEA 170 (203)
Q Consensus 124 ------~~----~~~-------------------~~-~~~~p~ivv~nK~D~~--~~-~~~~~~~~~~~~~~~~~~~~~~ 170 (203)
.. +.. .. -..+|+++++||.|.. +. .....+.+.+++...+.+++++
T Consensus 162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i 241 (368)
T 2dby_A 162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV 241 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence 00 000 00 1237999999999842 21 1234567888888889999999
Q ss_pred ecCCCCCHHH
Q 048709 171 SALNGDNVDT 180 (203)
Q Consensus 171 sa~~~~~i~~ 180 (203)
||+...++.+
T Consensus 242 SAk~E~el~e 251 (368)
T 2dby_A 242 SARLEAELAE 251 (368)
T ss_dssp CHHHHHHHHT
T ss_pred echhHHHHHH
Confidence 9987544443
No 201
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.61 E-value=3e-15 Score=112.57 Aligned_cols=110 Identities=14% Similarity=-0.053 Sum_probs=68.7
Q ss_pred EEEEEEeCCCchhhhhhhH------hhhcCCcEEEEEEeCCCH---HHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709 77 IKAQIWDTAGQERYRAVTS------AYYRGALGAVVVYDITKR---QSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147 (203)
Q Consensus 77 ~~~~l~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 147 (203)
+.+.+|||||...+..... ..+.. +++++++|+... ..+.....+... .....+.|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALL--IDLRLGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHH--HHHHHTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHH--HhcccCCCeEEEEecccccc
Confidence 4789999999876543221 24456 888999987542 222222111111 11113679999999999865
Q ss_pred ccCCCHHHHHHH----------------------------HHHc--CCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 048709 148 MWAVSAEDVVEF----------------------------AEDQ--GLFFSEASALNGDNVDTAFFRLLQEIYA 191 (203)
Q Consensus 148 ~~~~~~~~~~~~----------------------------~~~~--~~~~~~~sa~~~~~i~~~~~~i~~~~~~ 191 (203)
..+ .+++.++ +... ..+++++||++|.|+++++++|.+.+..
T Consensus 186 ~~~--~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 186 EEE--KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHH--HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ccc--HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 321 1111111 1232 2489999999999999999999887643
No 202
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.61 E-value=1.5e-15 Score=130.70 Aligned_cols=118 Identities=18% Similarity=0.162 Sum_probs=84.0
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCcc----------------CCCC--CcceeeEEEEEE------------ECCE
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCF----------------DSKS--TIGVEFQTRTVT------------INSK 75 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~----------------~~~~--~~~~~~~~~~~~------------~~~~ 75 (203)
....+|+|+|.+++|||||+++|+...-.. +..+ |.........+. .++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 456899999999999999999998641100 0111 111111122222 1334
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709 76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147 (203)
Q Consensus 76 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 147 (203)
.+.++||||||+..|......+++.+|++|+|+|+++..++.....|... .. .++|+++++||+|+..
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~-~~---~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQA-LG---ERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHH-HH---TTCEEEEEEECHHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHH-HH---cCCCeEEEEECCCcch
Confidence 67899999999999999899999999999999999997666665444332 22 4789999999999863
No 203
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.58 E-value=7.3e-16 Score=120.29 Aligned_cols=104 Identities=13% Similarity=0.036 Sum_probs=66.0
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCC--HH
Q 048709 77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVS--AE 154 (203)
Q Consensus 77 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~ 154 (203)
+.+.||||||...... .....+|++++|+|++.......+.. .. .+.|.++|+||+|+.+..... .+
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHHH
Confidence 5789999999654332 34689999999999976543211111 00 135789999999986521111 01
Q ss_pred HHHHHHHHc-------CCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 048709 155 DVVEFAEDQ-------GLFFSEASALNGDNVDTAFFRLLQEIYA 191 (203)
Q Consensus 155 ~~~~~~~~~-------~~~~~~~sa~~~~~i~~~~~~i~~~~~~ 191 (203)
++.+..... ..+++++||++|.|+++++++|.+.+..
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~ 261 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTA 261 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 222222221 4578999999999999999999987753
No 204
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.57 E-value=3.1e-15 Score=126.31 Aligned_cols=157 Identities=17% Similarity=0.169 Sum_probs=97.0
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceee----------------------------------------
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEF---------------------------------------- 65 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~---------------------------------------- 65 (203)
....+|+|+|.+++|||||+|+|++..+.+......+..+
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 4568999999999999999999999876332211111000
Q ss_pred -----------EEEEEEECCEEEEEEEEeCCCchh-------------hhhhhHhhh-cCCcEEEEEEeCCCHHHHHHHH
Q 048709 66 -----------QTRTVTINSKIIKAQIWDTAGQER-------------YRAVTSAYY-RGALGAVVVYDITKRQSFDHVA 120 (203)
Q Consensus 66 -----------~~~~~~~~~~~~~~~l~D~~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~ 120 (203)
....+...+ ..++.|+||||... ...+...|+ ..+|++++|+|++......+..
T Consensus 129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 001111111 12478999999432 233444555 5789999999998743222221
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHH----cC-CeEEEEecCCCCCHHHHHHHHHHH
Q 048709 121 RGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAED----QG-LFFSEASALNGDNVDTAFFRLLQE 188 (203)
Q Consensus 121 ~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~-~~~~~~sa~~~~~i~~~~~~i~~~ 188 (203)
.++..+ ...+.|+++|+||+|+........+ +.. ... .+ .+++.+||++|.|++++++.+.+.
T Consensus 208 ~ll~~L---~~~g~pvIlVlNKiDlv~~~~~~~~-il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 208 KIAKEV---DPQGQRTIGVITKLDLMDEGTDARD-VLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHH---CTTCSSEEEEEECTTSSCTTCCSHH-HHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHH---HhcCCCEEEEEeCcccCCcchhhHH-HHH-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 222322 2357899999999999764333222 211 001 12 357789999999999999888863
No 205
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.52 E-value=1.3e-14 Score=113.00 Aligned_cols=103 Identities=15% Similarity=0.093 Sum_probs=62.7
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHH
Q 048709 77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDV 156 (203)
Q Consensus 77 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 156 (203)
+.+.|+||+|..... ......+|.+++|+|+...+..+.+...+ . ..|.++++||+|+...........
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~-----~~~~ivvlNK~Dl~~~~~~s~~~~ 216 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---F-----ELADMIAVNKADDGDGERRASAAA 216 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---H-----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---h-----ccccEEEEEchhccCchhHHHHHH
Confidence 578999999964322 23457899999999987543321111111 1 234577789999743211111112
Q ss_pred HHHHHH----------cCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 048709 157 VEFAED----------QGLFFSEASALNGDNVDTAFFRLLQEIY 190 (203)
Q Consensus 157 ~~~~~~----------~~~~~~~~sa~~~~~i~~~~~~i~~~~~ 190 (203)
.++... +..+++.+||+++.|++++++.|.+...
T Consensus 217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 222221 1457899999999999999999988764
No 206
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.51 E-value=5.3e-13 Score=113.28 Aligned_cols=118 Identities=18% Similarity=0.106 Sum_probs=78.7
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcC--------CCc----------cCCCCCcceeeEEEEEEEC-----CEEEEEEE
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKN--------EFC----------FDSKSTIGVEFQTRTVTIN-----SKIIKAQI 81 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~--------~~~----------~~~~~~~~~~~~~~~~~~~-----~~~~~~~l 81 (203)
.++-.+|+|+|+.++|||||..+|+.. +.. .+..+..++......+.+. ...+.++|
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl 89 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV 89 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence 356689999999999999999998531 111 1111222222233333332 23578999
Q ss_pred EeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 048709 82 WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV 146 (203)
Q Consensus 82 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 146 (203)
+||||+..|..-....++-+|++|+|+|+...-..+.. ..+..+.+ .++|.++++||+|..
T Consensus 90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~-~v~~~a~~---~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE-TVWRQANK---YGVPRIVYVNKMDRQ 150 (709)
T ss_dssp ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH---HTCCEEEEEECSSST
T ss_pred EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHH-HHHHHHHH---cCCCeEEEEcccccc
Confidence 99999999988888889999999999999875333222 33333333 378999999999975
No 207
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.50 E-value=8.3e-15 Score=122.84 Aligned_cols=115 Identities=20% Similarity=0.192 Sum_probs=77.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc--CCCcc----CCCCC----------cceeeEEEEEEECCEEEEEEEEeCCCchhhhh
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK--NEFCF----DSKST----------IGVEFQTRTVTINSKIIKAQIWDTAGQERYRA 92 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~--~~~~~----~~~~~----------~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 92 (203)
.+|+|+|+.++|||||..+|+. +.+.. ....+ -+++.......+..++..++|+||||+..|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 4799999999999999999863 11110 00000 01222222223333446789999999999998
Q ss_pred hhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709 93 VTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147 (203)
Q Consensus 93 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 147 (203)
-....++-+|++|+|+|+...-.-+. ...+..+.. .++|.++++||+|...
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~---~~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRK---MGIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHH---HTCSCEECCEECCSSS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHH---cCCCeEEEEecccccc
Confidence 88888999999999999987533222 233344444 3788899999999864
No 208
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.45 E-value=1.4e-13 Score=105.58 Aligned_cols=97 Identities=15% Similarity=0.109 Sum_probs=79.1
Q ss_pred chhhhhhhHhhhcCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCC-HHHHHHHHHHcC
Q 048709 87 QERYRAVTSAYYRGALGAVVVYDITKRQ-SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVS-AEDVVEFAEDQG 164 (203)
Q Consensus 87 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~ 164 (203)
++++..+.+.++.++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+...+. .++..+++...+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 5667777788999999999999999986 88888888876654 578999999999997643222 345666777788
Q ss_pred CeEEEEecCCCCCHHHHHHHHH
Q 048709 165 LFFSEASALNGDNVDTAFFRLL 186 (203)
Q Consensus 165 ~~~~~~sa~~~~~i~~~~~~i~ 186 (203)
++++++||++|.|++++++.+.
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHhhcc
Confidence 9999999999999999987764
No 209
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.44 E-value=3.6e-12 Score=100.63 Aligned_cols=87 Identities=16% Similarity=0.145 Sum_probs=64.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCC-ccCCCCCcceeeEEEEEEECCE---------------EEEEEEEeCCCchh
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEF-CFDSKSTIGVEFQTRTVTINSK---------------IIKAQIWDTAGQER 89 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~ 89 (203)
....+|+++|++|+|||||+|+|++... .....|..+.++....+.+++. ...+.+||+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4468999999999999999999999776 4555566666666666666541 13578999999432
Q ss_pred -------hhhhhHhhhcCCcEEEEEEeCCC
Q 048709 90 -------YRAVTSAYYRGALGAVVVYDITK 112 (203)
Q Consensus 90 -------~~~~~~~~~~~~d~~i~v~d~~~ 112 (203)
.......+++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22234556789999999999863
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.44 E-value=1.1e-13 Score=108.97 Aligned_cols=88 Identities=14% Similarity=0.116 Sum_probs=54.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCE---------------EEEEEEEeCCCchhh
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSK---------------IIKAQIWDTAGQERY 90 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~ 90 (203)
...++|+++|.+|+|||||+|+|++........++.+.++....+.+++. ...+.+|||||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 34589999999999999999999998765555566666666666655442 235899999997664
Q ss_pred hh-------hhHhhhcCCcEEEEEEeCCCH
Q 048709 91 RA-------VTSAYYRGALGAVVVYDITKR 113 (203)
Q Consensus 91 ~~-------~~~~~~~~~d~~i~v~d~~~~ 113 (203)
.+ ....+++.+|++++|+|+.+.
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC---
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 43 345678999999999999753
No 211
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.42 E-value=1.6e-13 Score=98.21 Aligned_cols=103 Identities=9% Similarity=0.010 Sum_probs=72.1
Q ss_pred CCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHH---HHhhc--CCCCcEEEEEeCC-CCCcccCCCHHHHHH
Q 048709 85 AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE---LRAHA--DSSIRIILIGNKS-DLVDMWAVSAEDVVE 158 (203)
Q Consensus 85 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~---~~~~~--~~~~p~ivv~nK~-D~~~~~~~~~~~~~~ 158 (203)
+|+...+.+|+.||.++|++|||+|.+|.+.++ .+..+.. +.... -.++|++|++||. |+++ .++..++.+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~e 186 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH 186 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHHH
Confidence 378899999999999999999999999865433 3333322 22222 1578999999995 7765 667777766
Q ss_pred HHHH----cCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 048709 159 FAED----QGLFFSEASALNGDNVDTAFFRLLQEIY 190 (203)
Q Consensus 159 ~~~~----~~~~~~~~sa~~~~~i~~~~~~i~~~~~ 190 (203)
.... ..+.+..|||++|.|+.+.++|+.+.+.
T Consensus 187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 5432 3467999999999999999999987653
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.29 E-value=7.9e-12 Score=93.69 Aligned_cols=104 Identities=7% Similarity=-0.010 Sum_probs=76.2
Q ss_pred CCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHH---HHH-hhc-CCCCcEEEEEeC-CCCCcccCCCHHHHH
Q 048709 84 TAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVE---ELR-AHA-DSSIRIILIGNK-SDLVDMWAVSAEDVV 157 (203)
Q Consensus 84 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~---~~~-~~~-~~~~p~ivv~nK-~D~~~~~~~~~~~~~ 157 (203)
.+|+...+.+|+.|+.++|++|||+|.+|.+.++ .+..+. .+. ... -.+.|++|++|| .|+++ .++..++.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~ 270 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA 270 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHH
Confidence 3578889999999999999999999999876433 222222 222 211 257899999996 58876 66777776
Q ss_pred HHHHH----cCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 048709 158 EFAED----QGLFFSEASALNGDNVDTAFFRLLQEIY 190 (203)
Q Consensus 158 ~~~~~----~~~~~~~~sa~~~~~i~~~~~~i~~~~~ 190 (203)
+.... ..+.+..|||.+|+|+.+.++|+.+.+.
T Consensus 271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 65432 3466999999999999999999998763
No 213
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.09 E-value=2.9e-11 Score=98.30 Aligned_cols=152 Identities=13% Similarity=0.117 Sum_probs=85.0
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHh------cCCCccCC----CCCc-----------ceeeEEEEEE-------------
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFT------KNEFCFDS----KSTI-----------GVEFQTRTVT------------- 71 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~------~~~~~~~~----~~~~-----------~~~~~~~~~~------------- 71 (203)
.....|+|+|.+||||||+++.|. +.+..... .+.. +.........
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 346789999999999999999997 44321110 0000 0111110000
Q ss_pred ECCEEEEEEEEeCCCchhhh-hhhHh---h--hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcE-EEEEeCCC
Q 048709 72 INSKIIKAQIWDTAGQERYR-AVTSA---Y--YRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRI-ILIGNKSD 144 (203)
Q Consensus 72 ~~~~~~~~~l~D~~g~~~~~-~~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D 144 (203)
.....+.+.|+||||..... .+... . +..+|.+++|+|+........ ....+.. .+|+ ++|+||+|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~---~a~~~~~----~~~i~gvVlNK~D 251 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA---QAKAFKD----KVDVASVIVTKLD 251 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH---HHHHHHH----HHCCCCEEEECTT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH---HHHHHHh----hcCceEEEEeCCc
Confidence 00023568999999964321 11111 1 237899999999987533111 1122222 1464 89999999
Q ss_pred CCcccCCCHHHHHHHHHHcCCeE------------------EEEecCCCCC-HHHHHHHHHHH
Q 048709 145 LVDMWAVSAEDVVEFAEDQGLFF------------------SEASALNGDN-VDTAFFRLLQE 188 (203)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~------------------~~~sa~~~~~-i~~~~~~i~~~ 188 (203)
..... ..+.......+.|+ +.+|+..|.| +.++++++.+.
T Consensus 252 ~~~~~----g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKG----GGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCC----THHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccch----HHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 86421 12333344455544 2358888988 98888888765
No 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.07 E-value=3.3e-10 Score=90.14 Aligned_cols=140 Identities=16% Similarity=0.229 Sum_probs=69.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCC--CcceeeEEEEEEE--CCEEEEEEEEeCCCchhh-------h-----
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKS--TIGVEFQTRTVTI--NSKIIKAQIWDTAGQERY-------R----- 91 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~l~D~~g~~~~-------~----- 91 (203)
.++++|+|++|+|||||+|.|.+..+...... ..+.......+.. .+....+.++|++|.... .
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 46799999999999999999998754321111 1111111112222 222236789999874211 1
Q ss_pred ------hhhHhhh---------cCC--c-EEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCC-
Q 048709 92 ------AVTSAYY---------RGA--L-GAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVS- 152 (203)
Q Consensus 92 ------~~~~~~~---------~~~--d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~- 152 (203)
.....+. .++ | +++|+.|...+-+..++ ..+... ..++|+|+|+||+|.....+..
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di----eilk~L-~~~~~vI~Vi~KtD~Lt~~E~~~ 196 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL----VTMKKL-DSKVNIIPIIAKADAISKSELTK 196 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH----HHHHHT-CSCSEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH----HHHHHH-hhCCCEEEEEcchhccchHHHHH
Confidence 1111111 112 2 35566666554332222 222222 2678999999999976532210
Q ss_pred -HHHHHHHHHHcCCeEEEEec
Q 048709 153 -AEDVVEFAEDQGLFFSEASA 172 (203)
Q Consensus 153 -~~~~~~~~~~~~~~~~~~sa 172 (203)
...+.+.+...+++++.+|.
T Consensus 197 l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 197 FKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHHHBTTBCCCCCCC-
T ss_pred HHHHHHHHHHHcCCcEEecCC
Confidence 11222223345677777764
No 215
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.05 E-value=1.1e-09 Score=86.10 Aligned_cols=97 Identities=19% Similarity=0.217 Sum_probs=73.7
Q ss_pred CchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHH----HH
Q 048709 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEF----AE 161 (203)
Q Consensus 86 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~ 161 (203)
..+.|..+.+.+.+.++++++|+|++++. ..|...+.+.. .+.|+++|+||+|+... ....+++.++ +.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHH
Confidence 45788999999999999999999999864 24444444443 37899999999999753 3344444444 55
Q ss_pred HcCC---eEEEEecCCCCCHHHHHHHHHHHH
Q 048709 162 DQGL---FFSEASALNGDNVDTAFFRLLQEI 189 (203)
Q Consensus 162 ~~~~---~~~~~sa~~~~~i~~~~~~i~~~~ 189 (203)
..++ +++.+||++|.|++++++.+.+..
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 6677 799999999999999998886643
No 216
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.01 E-value=2.2e-11 Score=95.85 Aligned_cols=137 Identities=17% Similarity=0.125 Sum_probs=78.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC------CCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhh--------hh
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKN------EFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRA--------VT 94 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~ 94 (203)
.+|+++|.+|+|||||+|+|++. .......+. ++.....+.++. .+.++||||...... ..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~g--tT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPG--TTLDMIEIPLES---GATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTT--SSCEEEEEECST---TCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCC--eEEeeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHH
Confidence 57999999999999999999986 222222222 233333444443 268999999532221 11
Q ss_pred Hhhh--cCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEec
Q 048709 95 SAYY--RGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASA 172 (203)
Q Consensus 95 ~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa 172 (203)
..++ +..+.++++++....--+..+. .+......+.|+++++||.|....... ......+.+..+..+...++
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~----~l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~ 312 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLA----RLDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSK 312 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCG
T ss_pred HHHhcccccCceEEEEcCCceEEECCEE----EEEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCc
Confidence 1222 6778899999984310000110 012222357899999999998753222 22333344555655555555
Q ss_pred CCC
Q 048709 173 LNG 175 (203)
Q Consensus 173 ~~~ 175 (203)
.+.
T Consensus 313 ~~~ 315 (369)
T 3ec1_A 313 RYA 315 (369)
T ss_dssp GGT
T ss_pred hhh
Confidence 443
No 217
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.96 E-value=6.1e-10 Score=83.95 Aligned_cols=137 Identities=19% Similarity=0.180 Sum_probs=69.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCC-------CCCcceeeEEEEEEEC--CEEEEEEEEeCCCchhh-------h
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDS-------KSTIGVEFQTRTVTIN--SKIIKAQIWDTAGQERY-------R 91 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~~~-------~ 91 (203)
.++++++|++|+|||||+|.|++...+... ............+... +....+.++|++|.... .
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 489999999999999999999875332111 0000000111111111 12236789999983210 0
Q ss_pred hh---h----Hh--------------hhcCCcEEEEEEeCC-CHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc
Q 048709 92 AV---T----SA--------------YYRGALGAVVVYDIT-KRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW 149 (203)
Q Consensus 92 ~~---~----~~--------------~~~~~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 149 (203)
.+ . .. .+..+++.++++|.. .+-.-.+ ...+..+.. . +++++|++|+|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~---~-~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK---V-VNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT---T-SEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh---c-CcEEEEEeccccCCHH
Confidence 00 0 00 123457888888854 2211111 122233322 3 8899999999976532
Q ss_pred CC--CHHHHHHHHHHcCCeEEE
Q 048709 150 AV--SAEDVVEFAEDQGLFFSE 169 (203)
Q Consensus 150 ~~--~~~~~~~~~~~~~~~~~~ 169 (203)
+. ....+.+.+...++.++.
T Consensus 157 e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 157 EKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHHcCccccC
Confidence 11 122344445566776664
No 218
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.96 E-value=3.7e-11 Score=94.53 Aligned_cols=134 Identities=13% Similarity=0.127 Sum_probs=72.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCcc-----CCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhh----h----H
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCF-----DSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV----T----S 95 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----~----~ 95 (203)
.+|+++|.+|+|||||+|+|++..... ...+..+++.....+.++.. +.++||||......+ . .
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 589999999999999999998853111 01122223333333444332 689999995432211 1 1
Q ss_pred hh--hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHH-HHHHHcCCeEEEEe
Q 048709 96 AY--YRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVV-EFAEDQGLFFSEAS 171 (203)
Q Consensus 96 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-~~~~~~~~~~~~~s 171 (203)
.+ ....+.++++++....--...+ ..+......+.|+++++||.|..... ..+... .+.+..+..+...+
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l----~~~d~l~~~~~~~~~v~nk~d~~~~~--~~~~~~~~~~~~~g~~l~p~~ 310 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGL----ARFDYVSGGRRAFTCHFSNRLTIHRT--KLEKADELYKNHAGDLLSPPT 310 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTT----EEEEEEESSSEEEEEEECTTSCEEEE--EHHHHHHHHHHHBTTTBCSSC
T ss_pred HhccccccCceEEEEcCCCEEEEcce----EEEEEecCCCceEEEEecCccccccc--cHHHHHHHHHHHhCCccCCCc
Confidence 11 2566788888887421000011 00122223578999999999987632 233333 33444554444333
No 219
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.96 E-value=1.2e-08 Score=81.09 Aligned_cols=157 Identities=16% Similarity=0.161 Sum_probs=84.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCccCCC-CCcceeeE-EEEEEECCEEEEEEEEeCCCchhhhhhhHhh-----hcC
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSK-STIGVEFQ-TRTVTINSKIIKAQIWDTAGQERYRAVTSAY-----YRG 100 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~-----~~~ 100 (203)
...++|+|++|||||||+|.|.+...+..-. ...+.... ...+.-....-.+.+||++|..........+ +..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 3589999999999999999999843221110 01111000 0011111111146889999853211111222 233
Q ss_pred CcEEEEEEeCC--CHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC-------cccCCCHHHHHHHHH--------Hc
Q 048709 101 ALGAVVVYDIT--KRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV-------DMWAVSAEDVVEFAE--------DQ 163 (203)
Q Consensus 101 ~d~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-------~~~~~~~~~~~~~~~--------~~ 163 (203)
.+.+++ ++.. ..... .....+.. .+.|+++|.||.|+. .-+....+++.+... ..
T Consensus 149 ~~~~~~-lS~G~~~kqrv----~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~ 220 (413)
T 1tq4_A 149 YDFFII-ISATRFKKNDI----DIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN 220 (413)
T ss_dssp CSEEEE-EESSCCCHHHH----HHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred cCCeEE-eCCCCccHHHH----HHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 455554 7776 32221 12222222 367999999999964 111223444333322 22
Q ss_pred C---CeEEEEec--CCCCCHHHHHHHHHHHHHHh
Q 048709 164 G---LFFSEASA--LNGDNVDTAFFRLLQEIYAL 192 (203)
Q Consensus 164 ~---~~~~~~sa--~~~~~i~~~~~~i~~~~~~~ 192 (203)
+ ..++.+|+ ..+.|++++.+.+.+.+.+-
T Consensus 221 g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 221 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred CCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 2 35788999 56667999999998877553
No 220
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.90 E-value=3.5e-09 Score=83.33 Aligned_cols=97 Identities=21% Similarity=0.221 Sum_probs=71.8
Q ss_pred CchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHH----HH
Q 048709 86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEF----AE 161 (203)
Q Consensus 86 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~ 161 (203)
.++.|..+...++..++++++|+|++++.+ .|...+.+.. .+.|+++|+||+|+... ....+.+.++ +.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPR-SVKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCT-TCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCC-ccCHHHHHHHHHHHHH
Confidence 467899999999999999999999999763 3333333333 37899999999999753 3334444444 45
Q ss_pred HcCC---eEEEEecCCCCCHHHHHHHHHHHH
Q 048709 162 DQGL---FFSEASALNGDNVDTAFFRLLQEI 189 (203)
Q Consensus 162 ~~~~---~~~~~sa~~~~~i~~~~~~i~~~~ 189 (203)
..++ +++.+||++|.|++++++.+.+..
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 5666 789999999999999998886644
No 221
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.82 E-value=1.1e-09 Score=82.27 Aligned_cols=57 Identities=19% Similarity=0.303 Sum_probs=36.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 89 (203)
++++++|.+|+|||||+|+|.+....... ++.+.+.....+..+. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVG-AQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccC-CCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 79999999999999999999987653322 3333333223333332 578999999654
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.81 E-value=8.2e-09 Score=78.28 Aligned_cols=101 Identities=16% Similarity=0.059 Sum_probs=69.5
Q ss_pred EEeCCCch-hhhhhhHhhhcCCcEEEEEEeCCCHHHHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHH
Q 048709 81 IWDTAGQE-RYRAVTSAYYRGALGAVVVYDITKRQSFD--HVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVV 157 (203)
Q Consensus 81 l~D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 157 (203)
+-..||+. .........+..+|+++.|+|+.++.+.. .+..++ .++|.++|+||+|+.... ..+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~--~~~~~~ 72 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAA--VTQQWK 72 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHH--HHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHH--HHHHHH
Confidence 34567754 33344566789999999999999986654 233322 478999999999997621 123334
Q ss_pred HHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 048709 158 EFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA 191 (203)
Q Consensus 158 ~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~ 191 (203)
++....+++++.+||+++.|++++++.+.+.+..
T Consensus 73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 4555567899999999999999999888877654
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.78 E-value=5.6e-09 Score=79.17 Aligned_cols=59 Identities=22% Similarity=0.394 Sum_probs=36.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCch
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 88 (203)
...++|+++|.||+|||||+|+|.+....... ...+++.....+..+. .+.+|||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTG-DRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecC-CCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 35689999999999999999999987643222 2222222222333332 47899999953
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.68 E-value=5.1e-08 Score=77.97 Aligned_cols=86 Identities=15% Similarity=0.054 Sum_probs=53.3
Q ss_pred EEEEEEeCCCchhhh-----hhhH-hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC
Q 048709 77 IKAQIWDTAGQERYR-----AVTS-AYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA 150 (203)
Q Consensus 77 ~~~~l~D~~g~~~~~-----~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 150 (203)
+.+.|+||+|..... .+.. ......|.+++|+|+......... ...+... -.+..+|+||.|...
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~---a~~f~~~---~~i~gVIlTKlD~~~--- 253 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ---ALAFKEA---TPIGSIIVTKLDGSA--- 253 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH---HHHHHHS---CTTEEEEEECCSSCS---
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH---HHHHHhh---CCCeEEEEECCCCcc---
Confidence 578899999943211 1111 113357899999999875432222 2222221 234678999999854
Q ss_pred CCHHHHHHHHHHcCCeEEEEec
Q 048709 151 VSAEDVVEFAEDQGLFFSEASA 172 (203)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~sa 172 (203)
....+.......+.|+..++.
T Consensus 254 -~gG~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 254 -KGGGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp -SHHHHHHHHHTTCCCEEEEEC
T ss_pred -cccHHHHHHHHHCCCEEEEEc
Confidence 344566677778999888775
No 225
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.49 E-value=5.8e-07 Score=72.01 Aligned_cols=83 Identities=14% Similarity=0.079 Sum_probs=49.0
Q ss_pred EEEEEEeCCCchhhhh-hhH---h--hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCC-c-EEEEEeCCCCCcc
Q 048709 77 IKAQIWDTAGQERYRA-VTS---A--YYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSI-R-IILIGNKSDLVDM 148 (203)
Q Consensus 77 ~~~~l~D~~g~~~~~~-~~~---~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-~ivv~nK~D~~~~ 148 (203)
+.+.|+||||...... +.. . .+..+|.+++|+|+..... .......+. ... | ..+|+||+|...
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~----~~~~~i~gvVlnK~D~~~- 252 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK----EAVGEIGSIIVTKLDGSA- 252 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH----TTSCSCEEEEEECSSSCS-
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh----hcccCCeEEEEeCCCCcc-
Confidence 5679999999543211 111 1 1236899999999876532 111122221 234 5 889999999753
Q ss_pred cCCCHHHHHHHHHHcCCeEEEE
Q 048709 149 WAVSAEDVVEFAEDQGLFFSEA 170 (203)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~ 170 (203)
....+..+....+.|+..+
T Consensus 253 ---~~g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 253 ---KGGGALSAVAETKAPIKFI 271 (432)
T ss_dssp ---TTHHHHHHHHHSSCCEEEE
T ss_pred ---chHHHHHHHHHHCCCEEEe
Confidence 1233455667777776655
No 226
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.45 E-value=1.9e-07 Score=77.25 Aligned_cols=64 Identities=17% Similarity=0.135 Sum_probs=40.1
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCc-ceeeEEEEE--EE-CCEEEEEEEEeCCCch
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTI-GVEFQTRTV--TI-NSKIIKAQIWDTAGQE 88 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~-~~~~~~~~~--~~-~~~~~~~~l~D~~g~~ 88 (203)
....++|+|+|.||+|||||+|+|++.........++ +.+.....+ +. ......+.++||||..
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 3467999999999999999999999977432221111 111112221 11 1122457899999954
No 227
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.42 E-value=5.3e-07 Score=72.03 Aligned_cols=90 Identities=17% Similarity=0.100 Sum_probs=55.1
Q ss_pred EEEEEEeCCCchh--hh-hhh---Hh--hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcc
Q 048709 77 IKAQIWDTAGQER--YR-AVT---SA--YYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148 (203)
Q Consensus 77 ~~~~l~D~~g~~~--~~-~~~---~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 148 (203)
+.+.++||||... .. ... .. .....+.+++|+|+...+...... ..+... -.+..+|+||.|...
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a---~~f~~~---~~~~gVIlTKlD~~a- 252 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLA---SRFHQA---SPIGSVIITKMDGTA- 252 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHH---HHHHHH---CSSEEEEEECGGGCS-
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHH---HHHhcc---cCCcEEEEecccccc-
Confidence 5678999999533 11 111 11 122468999999998654322222 222222 234689999999753
Q ss_pred cCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 048709 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNV 178 (203)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 178 (203)
....+.......+.|+..++. |+++
T Consensus 253 ---~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 253 ---KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp ---CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred ---cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 345667777788999888876 5443
No 228
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.39 E-value=7.5e-07 Score=67.95 Aligned_cols=91 Identities=16% Similarity=0.116 Sum_probs=56.5
Q ss_pred EEEEEEeCCCchh--hhh-hhH-----hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCc
Q 048709 77 IKAQIWDTAGQER--YRA-VTS-----AYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR-IILIGNKSDLVD 147 (203)
Q Consensus 77 ~~~~l~D~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~ 147 (203)
+.+.++||||... ... +.. .....+|.+++|+|+..... .......+.. ..| ..+|+||+|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ----ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence 4689999999655 221 221 12447899999999875322 1122222222 345 678999999753
Q ss_pred ccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 048709 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDT 180 (203)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 180 (203)
....+...+...+.|+..++ .|.++++
T Consensus 254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 254 ----KGGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp ----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred ----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 34456677788889988776 4555543
No 229
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.33 E-value=2e-07 Score=69.92 Aligned_cols=84 Identities=18% Similarity=0.069 Sum_probs=60.5
Q ss_pred hhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEec
Q 048709 93 VTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASA 172 (203)
Q Consensus 93 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa 172 (203)
.....+.++|+++.|+|+.++.+..... +. .. ++|.++|+||+|+.+.. ..+...++....++++ .+||
T Consensus 14 ~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~----ll--~k~~iivlNK~DL~~~~--~~~~~~~~~~~~g~~v-~iSa 82 (262)
T 3cnl_A 14 QIKDLLRLVNTVVEVRDARAPFATSAYG--VD----FS--RKETIILLNKVDIADEK--TTKKWVEFFKKQGKRV-ITTH 82 (262)
T ss_dssp HHHHHHTTCSEEEEEEETTSTTTTSCTT--SC----CT--TSEEEEEEECGGGSCHH--HHHHHHHHHHHTTCCE-EECC
T ss_pred HHHHHHhhCCEEEEEeeCCCCCcCcChH--HH----hc--CCCcEEEEECccCCCHH--HHHHHHHHHHHcCCeE-EEEC
Confidence 3456789999999999999876543210 11 11 78999999999997631 1233445555667888 9999
Q ss_pred CCCCCHHHHHHHHHH
Q 048709 173 LNGDNVDTAFFRLLQ 187 (203)
Q Consensus 173 ~~~~~i~~~~~~i~~ 187 (203)
+++.|++++++.+.+
T Consensus 83 ~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 83 KGEPRKVLLKKLSFD 97 (262)
T ss_dssp TTSCHHHHHHHHCCC
T ss_pred CCCcCHHHHHHHHHH
Confidence 999999988876643
No 230
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.29 E-value=1.8e-06 Score=72.16 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
.|+|+|++|||||||++.|.+..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999999864
No 231
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.16 E-value=4.8e-07 Score=69.19 Aligned_cols=88 Identities=17% Similarity=0.093 Sum_probs=59.5
Q ss_pred hhHhhhcCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC--CCHHHHHHHHHHcCCeEEE
Q 048709 93 VTSAYYRGALGAVVVYDITKRQ-SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA--VSAEDVVEFAEDQGLFFSE 169 (203)
Q Consensus 93 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~ 169 (203)
+.+..+.++|.+++|+|+.+|. +...+.+++..... .++|.++|+||+|+.+... ...+...++....+.+++.
T Consensus 79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~ 155 (307)
T 1t9h_A 79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYL 155 (307)
T ss_dssp ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEE
Confidence 3445689999999999999764 33334444332222 4788999999999976321 0123444555566889999
Q ss_pred EecCCCCCHHHHHH
Q 048709 170 ASALNGDNVDTAFF 183 (203)
Q Consensus 170 ~sa~~~~~i~~~~~ 183 (203)
+||.++.|+++++.
T Consensus 156 ~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 156 TSSKDQDSLADIIP 169 (307)
T ss_dssp CCHHHHTTCTTTGG
T ss_pred EecCCCCCHHHHHh
Confidence 99998888776554
No 232
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.12 E-value=3e-06 Score=65.50 Aligned_cols=91 Identities=12% Similarity=0.024 Sum_probs=52.3
Q ss_pred EEEEEeCCCchhhhh-hhHh-----hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCC
Q 048709 78 KAQIWDTAGQERYRA-VTSA-----YYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAV 151 (203)
Q Consensus 78 ~~~l~D~~g~~~~~~-~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 151 (203)
.+.++|++|...... .... ..-..|-.+++.|+..... +...+..+.... -..++++||.|...
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~---~~~~~~~~~~~~---~it~iilTKlD~~a---- 282 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNA---IVEQARQFNEAV---KIDGIILTKLDADA---- 282 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTH---HHHHHHHHHHHS---CCCEEEEECGGGCS----
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHH---HHHHHHHHHHhc---CCCEEEEeCcCCcc----
Confidence 456799999533221 1111 1124677899999765432 222233333221 12378899999633
Q ss_pred CHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 048709 152 SAEDVVEFAEDQGLFFSEASALNGDNVDT 180 (203)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 180 (203)
..-.+...+...+.|+..++ +|.++++
T Consensus 283 ~~G~~l~~~~~~~~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 283 RGGAALSISYVIDAPILFVG--VGQGYDD 309 (328)
T ss_dssp CCHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred chhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence 23456677788899988877 5555543
No 233
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.06 E-value=3e-07 Score=74.58 Aligned_cols=101 Identities=16% Similarity=0.122 Sum_probs=56.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhh--hhhh--------H
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY--RAVT--------S 95 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--~~~~--------~ 95 (203)
..++.|+++|.+||||||+.++|...-... ..++.............+......+||..|...+ ...+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999987532111 1111110000000000111123457899887332 2222 4
Q ss_pred hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHh
Q 048709 96 AYYRGALGAVVVYDITKRQSFDHVARGVEELRA 128 (203)
Q Consensus 96 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 128 (203)
.++...++.++|+|.++. +.+....|+..+..
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~ 147 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQ 147 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHh
Confidence 566667888999999986 44445555555544
No 234
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.01 E-value=1.7e-05 Score=61.88 Aligned_cols=84 Identities=15% Similarity=0.113 Sum_probs=55.4
Q ss_pred hhcCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCC-CHHHHHHHHHHcCCeEEEEecCC
Q 048709 97 YYRGALGAVVVYDITKRQ-SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAV-SAEDVVEFAEDQGLFFSEASALN 174 (203)
Q Consensus 97 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~sa~~ 174 (203)
...++|.+++|.+.. |. +...+.+++-.... .++|.++|+||+|+.+.... ..++........+++++.+|+.+
T Consensus 127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 468899999887654 43 33344444433322 36778999999999763210 01223344456788999999999
Q ss_pred CCCHHHHHHH
Q 048709 175 GDNVDTAFFR 184 (203)
Q Consensus 175 ~~~i~~~~~~ 184 (203)
+.|++++...
T Consensus 203 ~~gl~~L~~~ 212 (358)
T 2rcn_A 203 QDGLKPLEEA 212 (358)
T ss_dssp TBTHHHHHHH
T ss_pred CcCHHHHHHh
Confidence 9999987654
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.92 E-value=1.1e-05 Score=64.76 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=22.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~ 51 (203)
.+..-|+|+|++++|||||+|.|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 35577999999999999999999863
No 236
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.83 E-value=5.6e-05 Score=60.55 Aligned_cols=83 Identities=13% Similarity=0.040 Sum_probs=46.5
Q ss_pred EEEEEEeCCCchhhh-hhhH-----hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCccc
Q 048709 77 IKAQIWDTAGQERYR-AVTS-----AYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR-IILIGNKSDLVDMW 149 (203)
Q Consensus 77 ~~~~l~D~~g~~~~~-~~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~ 149 (203)
+.+.|+||||..... .+.. ......+.+++|+|+....... .....+.. ..+ .-+|+||.|....
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~---~~~~~f~~----~l~i~gvVlnK~D~~~~- 255 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAA---NTAKAFNE----ALPLTGVVLTKVDGDAR- 255 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHH---HHHHHHHH----HSCCCCEEEECTTSSSC-
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHH---HHHHHHhc----cCCCeEEEEecCCCCcc-
Confidence 568999999954332 1111 1244678899999987543221 11222222 223 3478999997532
Q ss_pred CCCHHHHHHHHHHcCCeEEEE
Q 048709 150 AVSAEDVVEFAEDQGLFFSEA 170 (203)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~ 170 (203)
. ..+.......+.|+..+
T Consensus 256 -~--g~~l~i~~~~~~Pi~~i 273 (433)
T 2xxa_A 256 -G--GAALSIRHITGKPIKFL 273 (433)
T ss_dssp -C--THHHHHHHHHCCCEEEE
T ss_pred -H--HHHHHHHHHHCCCeEEE
Confidence 1 24445566667665444
No 237
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.75 E-value=1.5e-05 Score=56.07 Aligned_cols=23 Identities=22% Similarity=0.700 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~ 51 (203)
.+++++|++|||||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998764
No 238
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.73 E-value=0.00013 Score=55.85 Aligned_cols=85 Identities=16% Similarity=0.130 Sum_probs=49.2
Q ss_pred EEEEEEeCCCchhhhh-hh------Hhhh-----cCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 048709 77 IKAQIWDTAGQERYRA-VT------SAYY-----RGALGAVVVYDITKRQ-SFDHVARGVEELRAHADSSIRIILIGNKS 143 (203)
Q Consensus 77 ~~~~l~D~~g~~~~~~-~~------~~~~-----~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 143 (203)
..+.++||||...... +. ...+ ...+.+++|+|+.... ....+ ..+.... + ..-+|+||.
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~~l~~a----~~~~~~~--~-i~gvVlTk~ 259 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQA----KIFKEAV--N-VTGIILTKL 259 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHH----HHHHHHS--C-CCEEEEECG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHHH----HHHHhcC--C-CCEEEEeCC
Confidence 3578999999522111 11 1111 2478889999987432 22222 2222221 1 235678999
Q ss_pred CCCcccCCCHHHHHHHHHHcCCeEEEEec
Q 048709 144 DLVDMWAVSAEDVVEFAEDQGLFFSEASA 172 (203)
Q Consensus 144 D~~~~~~~~~~~~~~~~~~~~~~~~~~sa 172 (203)
|... ..-.+...+...+.|+..+..
T Consensus 260 D~~~----~gG~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 260 DGTA----KGGITLAIARELGIPIKFIGV 284 (306)
T ss_dssp GGCS----CTTHHHHHHHHHCCCEEEEEC
T ss_pred CCcc----chHHHHHHHHHHCCCEEEEeC
Confidence 9643 233577888888999887754
No 239
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.60 E-value=3.2e-05 Score=54.40 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~ 51 (203)
--++|+|++|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999763
No 240
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.57 E-value=3.6e-05 Score=55.05 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
-.++|+|++|||||||++.|.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999976
No 241
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.55 E-value=0.00091 Score=48.07 Aligned_cols=85 Identities=14% Similarity=0.081 Sum_probs=55.9
Q ss_pred EEEEEEeCCCc-hhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHH
Q 048709 77 IKAQIWDTAGQ-ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAED 155 (203)
Q Consensus 77 ~~~~l~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 155 (203)
+.+.++|+|+. ... .....+..+|.+++++..+ ..+...+...+..+.... +.++.+|+|+.|.... ....+
T Consensus 68 yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~~~~~ 140 (209)
T 3cwq_A 68 YQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--KDGDE 140 (209)
T ss_dssp CSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--CHHHH
T ss_pred CCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--hHHHH
Confidence 56889999986 332 2345677899999988876 455666666666665532 4568899999986430 12345
Q ss_pred HHHHHHHcCCeEE
Q 048709 156 VVEFAEDQGLFFS 168 (203)
Q Consensus 156 ~~~~~~~~~~~~~ 168 (203)
+.+.+...+.+++
T Consensus 141 ~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 141 ARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHTTCCBC
T ss_pred HHHHHHHcCCchh
Confidence 6666666665544
No 242
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.55 E-value=0.00041 Score=55.36 Aligned_cols=85 Identities=15% Similarity=0.033 Sum_probs=48.1
Q ss_pred EEEEEEeCCCchhhhh-hhH-----hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC
Q 048709 77 IKAQIWDTAGQERYRA-VTS-----AYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA 150 (203)
Q Consensus 77 ~~~~l~D~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 150 (203)
+.+.++||||...... ... ...-..|.+++|+|+..... .......+.... + ...+|+||.|...
T Consensus 181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~---av~~a~~f~~~l--~-i~GVIlTKlD~~~--- 251 (425)
T 2ffh_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE---ALSVARAFDEKV--G-VTGLVLTKLDGDA--- 251 (425)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTH---HHHHHHHHHHHT--C-CCEEEEESGGGCS---
T ss_pred CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHH---HHHHHHHHHhcC--C-ceEEEEeCcCCcc---
Confidence 4688999999543211 111 11235788999999864322 112222222211 1 2467899999743
Q ss_pred CCHHHHHHHHHHcCCeEEEEe
Q 048709 151 VSAEDVVEFAEDQGLFFSEAS 171 (203)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~s 171 (203)
....+.......+.|+..+.
T Consensus 252 -~~g~alsi~~~~g~PI~flg 271 (425)
T 2ffh_A 252 -RGGAALSARHVTGKPIYFAG 271 (425)
T ss_dssp -SCHHHHHHHHHHCCCEEEEE
T ss_pred -cHHHHHHHHHHHCCCEEEEe
Confidence 22345566677888877665
No 243
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.51 E-value=5e-05 Score=54.27 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~ 51 (203)
-++++|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999874
No 244
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.49 E-value=2.5e-05 Score=59.65 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~ 52 (203)
-.++++|++|||||||+|.|.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 478999999999999999998754
No 245
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.49 E-value=5.6e-05 Score=53.40 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~ 51 (203)
-.|+++|++||||||+++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46999999999999999999875
No 246
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.48 E-value=5.4e-05 Score=53.49 Aligned_cols=21 Identities=33% Similarity=0.608 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 048709 31 VVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 31 i~vvG~~~sGKStli~~l~~~ 51 (203)
++|+|++|||||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999863
No 247
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.48 E-value=5.3e-05 Score=52.84 Aligned_cols=21 Identities=38% Similarity=0.458 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 048709 29 FKVVVIGDSAVGKSQILSRFT 49 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~ 49 (203)
=-++++|++|||||||++.+.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 358999999999999999754
No 248
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.48 E-value=5.5e-05 Score=54.41 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~ 51 (203)
=-++++|++|||||||++.|.+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 45899999999999999999874
No 249
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.47 E-value=6.5e-05 Score=53.69 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~ 50 (203)
.-.|+|+|++||||||+++.|.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999865
No 250
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.47 E-value=0.0002 Score=54.60 Aligned_cols=21 Identities=57% Similarity=0.835 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 048709 29 FKVVVIGDSAVGKSQILSRFT 49 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~ 49 (203)
-.++++|++|||||||+|.|.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999998
No 251
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.44 E-value=6.7e-05 Score=54.56 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~ 51 (203)
--++|+|++|||||||++.|.+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 57899999999999999999874
No 252
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.44 E-value=6.6e-05 Score=54.52 Aligned_cols=23 Identities=26% Similarity=0.648 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~ 51 (203)
-.++|+|++|||||||++.|.+.
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999874
No 253
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.43 E-value=7.6e-05 Score=53.70 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=22.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~ 51 (203)
.....|+|+|++|||||||++.|.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999988763
No 254
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.43 E-value=1.7e-05 Score=58.67 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~ 50 (203)
.+++|+|+|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999998853
No 255
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.41 E-value=7.7e-05 Score=54.84 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58999999999999999998754
No 256
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.37 E-value=9.4e-05 Score=52.81 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~ 51 (203)
--|+|+|++|||||||++.|.+.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 45899999999999999999864
No 257
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.36 E-value=9.9e-05 Score=50.83 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~ 52 (203)
-.++++|+.|||||||++.+.+..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999998754
No 258
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.36 E-value=9.4e-05 Score=53.97 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
.++++|+.|||||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998753
No 259
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.35 E-value=0.00011 Score=52.96 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~ 51 (203)
--|+|+|++||||||+++.|...
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 46899999999999999999865
No 260
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.33 E-value=0.00012 Score=54.06 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
.++++|+.|||||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998853
No 261
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.32 E-value=0.00012 Score=50.78 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
..|+++|++||||||+.+.|.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999876
No 262
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.32 E-value=0.00013 Score=52.42 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=21.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~ 50 (203)
....|+++|+.|||||||++.|.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998876
No 263
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.32 E-value=0.00015 Score=50.47 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5689999999999999999976
No 264
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.31 E-value=0.00014 Score=50.32 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 048709 29 FKVVVIGDSAVGKSQILSRF 48 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l 48 (203)
+-|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 265
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.31 E-value=0.00012 Score=52.93 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
.++++|+.|||||||++.+.+..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 266
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.31 E-value=0.00012 Score=55.05 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
.++++|+.|||||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999998853
No 267
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.31 E-value=0.00012 Score=52.28 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~ 52 (203)
..|+|+|++||||||+++.|.+.-
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 579999999999999999997653
No 268
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.30 E-value=0.00012 Score=54.65 Aligned_cols=23 Identities=35% Similarity=0.431 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
.++++|+.|||||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998753
No 269
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.30 E-value=0.00017 Score=50.22 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
..|+++|++||||||+.+.|.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5699999999999999998864
No 270
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.30 E-value=0.00014 Score=53.57 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
.++++|+.|||||||++.+.+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998753
No 271
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.28 E-value=0.00015 Score=56.51 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEF 53 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~ 53 (203)
.++++|++|||||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 689999999999999999998654
No 272
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.28 E-value=0.00014 Score=54.54 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
.++++|+.|||||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57999999999999999998853
No 273
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.28 E-value=0.00013 Score=54.28 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
.++++|+.|||||||++.+.+..
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998754
No 274
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.28 E-value=0.00015 Score=53.50 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~ 52 (203)
=.++++|+.|||||||++.|.+-.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998753
No 275
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.27 E-value=0.00015 Score=51.25 Aligned_cols=21 Identities=33% Similarity=0.608 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 048709 31 VVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 31 i~vvG~~~sGKStli~~l~~~ 51 (203)
|+|+||+|||||||++.|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 799999999999999999753
No 276
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.27 E-value=0.00014 Score=51.34 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 048709 30 KVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~ 50 (203)
-++++|++||||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999975
No 277
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.27 E-value=0.00016 Score=53.61 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
.++++|+.|||||||++.|.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998853
No 278
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.26 E-value=0.00017 Score=53.20 Aligned_cols=22 Identities=23% Similarity=0.607 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 048709 28 VFKVVVIGDSAVGKSQILSRFT 49 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~ 49 (203)
+..|+|+|++||||||+++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 279
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.26 E-value=0.00016 Score=52.14 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
++|+|+|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998843
No 280
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.26 E-value=0.00017 Score=52.82 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
.++++|+.|||||||++.+.+..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 281
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.25 E-value=0.00015 Score=54.19 Aligned_cols=23 Identities=48% Similarity=0.518 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
.++++|+.|||||||++.+.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 57999999999999999998753
No 282
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.25 E-value=0.00016 Score=51.75 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~ 50 (203)
..-|+|+|++||||||+++.|..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999875
No 283
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.25 E-value=0.00015 Score=55.28 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
=.++|+|++|||||||++.|.+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 4799999999999999999875
No 284
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.25 E-value=0.00015 Score=53.41 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
.++++|+.|||||||++.+.+..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 285
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.24 E-value=0.00015 Score=54.21 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
=.++|+|++|||||||++.+.+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 4699999999999999999876
No 286
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.24 E-value=0.00016 Score=53.85 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
.++++|+.|||||||++.|.+..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 287
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.24 E-value=0.00015 Score=51.47 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~ 51 (203)
.++++|++|||||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999998764
No 288
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.24 E-value=0.00017 Score=51.95 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
++|+|+|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998853
No 289
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.23 E-value=0.00017 Score=53.51 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
.++++|+.|||||||++.+.+..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999998753
No 290
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.23 E-value=0.00017 Score=53.48 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~ 51 (203)
.++++|+.|||||||++.+.+.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 291
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.22 E-value=0.00019 Score=53.62 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~ 51 (203)
.++++|+.|||||||++.|.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999875
No 292
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.22 E-value=0.00015 Score=52.35 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~ 51 (203)
.++++|+.|||||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999876
No 293
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.22 E-value=0.0002 Score=49.54 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 048709 30 KVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~ 50 (203)
.|+|+|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 294
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.21 E-value=0.00019 Score=53.81 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~ 51 (203)
.++++|+.|||||||++.+.+.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 295
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.20 E-value=0.0002 Score=54.00 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
.++++|+.|||||||++.|.+..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999998753
No 296
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.20 E-value=0.00011 Score=53.65 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=15.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHh-cC
Q 048709 29 FKVVVIGDSAVGKSQILSRFT-KN 51 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~-~~ 51 (203)
--++|+|++||||||+++.|. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 468999999999999999998 54
No 297
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.20 E-value=0.00019 Score=51.21 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
.+|+|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999876
No 298
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.20 E-value=0.0002 Score=53.76 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
.++|+|+.|||||||++.|.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998753
No 299
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.20 E-value=0.0002 Score=51.95 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
..|+++|++||||||+.+.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998854
No 300
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.18 E-value=0.0002 Score=53.27 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
.++++|+.|||||||++.+.+..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998854
No 301
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.17 E-value=0.0002 Score=53.57 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
.++++|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999998753
No 302
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.16 E-value=0.00028 Score=50.50 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
+.|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 303
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.15 E-value=0.00031 Score=50.30 Aligned_cols=23 Identities=22% Similarity=0.069 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~ 50 (203)
...|+|.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 304
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.15 E-value=0.0003 Score=49.35 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~ 50 (203)
...|+++|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998863
No 305
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.15 E-value=0.00033 Score=50.14 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=22.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~ 51 (203)
....|+|+|++||||||+.+.|.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3478999999999999999999764
No 306
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.15 E-value=0.00018 Score=50.33 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~ 51 (203)
.-.++++|++|+|||||++.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999998764
No 307
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.15 E-value=0.00029 Score=50.20 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=21.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~ 50 (203)
.++.|+|+|.+||||||+.+.|..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998854
No 308
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.14 E-value=0.00026 Score=52.95 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
.++++|+.|||||||++.+.+..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998854
No 309
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.14 E-value=0.00026 Score=50.31 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 048709 30 KVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~ 50 (203)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998865
No 310
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.13 E-value=0.00027 Score=53.89 Aligned_cols=25 Identities=28% Similarity=0.236 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNEF 53 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~~ 53 (203)
-.++++|++|||||||+|.|.+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 3689999999999999999987543
No 311
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.13 E-value=0.00023 Score=50.74 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
..|+|+|++||||||+.+.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 312
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.13 E-value=0.00032 Score=53.79 Aligned_cols=26 Identities=31% Similarity=0.286 Sum_probs=22.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~ 51 (203)
....-|+|+|++|||||||++.|.+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 44578999999999999999998763
No 313
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.12 E-value=0.0003 Score=49.55 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~ 50 (203)
+..|+++|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
No 314
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.12 E-value=0.00029 Score=50.65 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
+.|+++|+|||||+|....|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998854
No 315
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.11 E-value=0.00027 Score=49.44 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~ 51 (203)
.-++++|++|||||||+++|...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46899999999999999999864
No 316
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.11 E-value=0.00024 Score=51.56 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~ 51 (203)
=-++|+|++|||||||++.+.+.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999873
No 317
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.11 E-value=0.00027 Score=49.20 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
..|+++|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999865
No 318
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.11 E-value=0.00029 Score=50.19 Aligned_cols=22 Identities=18% Similarity=0.451 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
-.|+++|++||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 319
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.10 E-value=0.0002 Score=54.72 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~ 51 (203)
=.++|+|+.|||||||++.|.+-
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTS
T ss_pred CEEEEECCCCchHHHHHHHHHcC
Confidence 36899999999999999998774
No 320
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.09 E-value=0.00028 Score=51.81 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=19.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 048709 28 VFKVVVIGDSAVGKSQILSRFT 49 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~ 49 (203)
.=-++++|++|||||||++.+.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 3468999999999999999887
No 321
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.09 E-value=0.00032 Score=49.34 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 048709 30 KVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~ 50 (203)
.|+|.|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 322
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.09 E-value=0.00032 Score=49.30 Aligned_cols=22 Identities=27% Similarity=0.191 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998854
No 323
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.08 E-value=0.00015 Score=50.59 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~ 51 (203)
.++|+|++|||||||++.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998763
No 324
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.08 E-value=0.00029 Score=50.76 Aligned_cols=22 Identities=14% Similarity=0.421 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998854
No 325
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.08 E-value=0.00034 Score=51.59 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=21.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhc
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~ 50 (203)
.....|+|+|+.|||||||++.|.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999998866
No 326
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.07 E-value=0.00039 Score=49.57 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~ 51 (203)
...|+++|++||||||+.+.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999988653
No 327
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.07 E-value=0.00037 Score=49.13 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~ 50 (203)
+..|+++|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998853
No 328
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.06 E-value=0.00041 Score=53.33 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=22.2
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhc
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~ 50 (203)
...++-|+|+|++|||||||++.|.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34568899999999999999998854
No 329
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.05 E-value=0.0004 Score=54.34 Aligned_cols=33 Identities=24% Similarity=0.465 Sum_probs=26.5
Q ss_pred cCCCCCCCe--eeEEEEEcCCCCcHHHHHHHHhcC
Q 048709 19 KMIPDKIDY--VFKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 19 ~~~~~~~~~--~~~i~vvG~~~sGKStli~~l~~~ 51 (203)
...+..... .-+++|+|++|||||||++.|.+.
T Consensus 159 ~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 159 KFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp GGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHH
Confidence 345555555 678999999999999999999874
No 330
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.04 E-value=0.0003 Score=54.93 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~ 51 (203)
.|+|+|++|||||||++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999998763
No 331
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.04 E-value=0.00038 Score=47.94 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998854
No 332
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.04 E-value=0.00031 Score=54.80 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
-++++|++|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47999999999999999998854
No 333
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.04 E-value=0.00038 Score=51.56 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=21.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhc
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~ 50 (203)
...+.|+|.|.+||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998854
No 334
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.04 E-value=0.0004 Score=49.33 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=22.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~ 51 (203)
....|+|+|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4578999999999999999998764
No 335
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.04 E-value=0.00034 Score=53.04 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
.++++|+.|||||||++.|.+..
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58999999999999999998753
No 336
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.03 E-value=0.00038 Score=50.33 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~ 50 (203)
.+.|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998854
No 337
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.03 E-value=0.00043 Score=48.66 Aligned_cols=24 Identities=13% Similarity=0.374 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~ 51 (203)
...|+++|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 367999999999999999988654
No 338
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.03 E-value=0.00042 Score=49.54 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 6799999999999999999865
No 339
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.02 E-value=0.00036 Score=54.49 Aligned_cols=23 Identities=35% Similarity=0.354 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
-++++|+.|||||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 47899999999999999998854
No 340
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.00 E-value=0.00037 Score=54.29 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
-++++|++|||||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998854
No 341
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.99 E-value=0.00055 Score=51.90 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=21.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhc
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~ 50 (203)
.....|+|+|++|||||||++.|..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4568899999999999999998754
No 342
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.99 E-value=0.00045 Score=48.26 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~ 50 (203)
...|+++|.+||||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 35799999999999999998863
No 343
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.99 E-value=0.0004 Score=54.59 Aligned_cols=23 Identities=39% Similarity=0.484 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47999999999999999998854
No 344
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.99 E-value=0.00039 Score=54.26 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
.++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 57899999999999999998854
No 345
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.98 E-value=0.00062 Score=48.47 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=20.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~ 50 (203)
....|+|.|.+||||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998863
No 346
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.98 E-value=0.00045 Score=48.40 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998854
No 347
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.98 E-value=0.00042 Score=50.40 Aligned_cols=22 Identities=32% Similarity=0.658 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 048709 28 VFKVVVIGDSAVGKSQILSRFT 49 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~ 49 (203)
...|+|+|.+||||||+.+.|.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999885
No 348
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.98 E-value=0.00051 Score=51.99 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=21.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhc
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~ 50 (203)
..+.-|++.|++||||||+.+.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999964
No 349
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.98 E-value=0.00041 Score=54.22 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
.++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 57999999999999999998854
No 350
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.98 E-value=0.00029 Score=47.98 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~ 51 (203)
-.++++|++|+|||||++.+.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999998774
No 351
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.97 E-value=0.00049 Score=49.14 Aligned_cols=24 Identities=17% Similarity=0.218 Sum_probs=21.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~ 50 (203)
....|+|+|++||||||+++.|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998864
No 352
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.95 E-value=0.0005 Score=48.91 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~ 51 (203)
...|+|.|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 367999999999999999998764
No 353
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.94 E-value=0.00044 Score=54.25 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47999999999999999998854
No 354
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.94 E-value=0.00055 Score=52.31 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~ 50 (203)
....|+|+|++|||||||++.|.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999876
No 355
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.94 E-value=0.00046 Score=54.14 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
.++++|++|||||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 57899999999999999998753
No 356
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.94 E-value=0.00051 Score=49.91 Aligned_cols=22 Identities=14% Similarity=0.320 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
+.|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998853
No 357
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.94 E-value=0.0004 Score=50.30 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~ 50 (203)
...|+|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998853
No 358
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.94 E-value=0.00042 Score=54.22 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~ 51 (203)
-.++|+|++|||||||++.|.+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 47999999999999999999874
No 359
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.94 E-value=0.0007 Score=47.55 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~ 50 (203)
....|+++|.+||||||+.+.|..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 347799999999999999998865
No 360
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.93 E-value=0.00044 Score=51.98 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 048709 31 VVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 31 i~vvG~~~sGKStli~~l~~ 50 (203)
++++|++|+|||||++.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999999977
No 361
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.92 E-value=0.00047 Score=47.97 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 048709 30 KVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~ 50 (203)
+|+++|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 362
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.92 E-value=0.00039 Score=53.69 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~ 51 (203)
-.++|+|++|||||||++.|.+.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999874
No 363
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.92 E-value=0.00055 Score=48.22 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 048709 30 KVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~ 50 (203)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 364
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.90 E-value=0.00037 Score=54.18 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
.++++|++|||||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 58999999999999999998854
No 365
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.90 E-value=0.00079 Score=48.77 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
--|+|+|+|||||+|....|..
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3467799999999999988854
No 366
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.90 E-value=0.00065 Score=49.59 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=22.5
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~ 51 (203)
....-|+|.|+.||||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34578999999999999999998774
No 367
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.90 E-value=0.00052 Score=48.46 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
..|+++|.+||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998853
No 368
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.89 E-value=0.00051 Score=53.94 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
=.++|+|++||||||+++.|.+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999999876
No 369
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.89 E-value=0.00049 Score=52.50 Aligned_cols=84 Identities=13% Similarity=0.020 Sum_probs=46.4
Q ss_pred EEEEEeCCCchhhhh------------hhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 048709 78 KAQIWDTAGQERYRA------------VTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145 (203)
Q Consensus 78 ~~~l~D~~g~~~~~~------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 145 (203)
.+.+.||+|...... +.+......+.++++.|+....... ..+..+.... + ..++++||.|.
T Consensus 186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~---~~~~~~~~~~--~-~t~iivTh~d~ 259 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGL---EQAKKFHEAV--G-LTGVIVTKLDG 259 (304)
T ss_dssp SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHH---HHHHHHHHHH--C-CSEEEEECTTS
T ss_pred CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHH---HHHHHHHHHc--C-CcEEEEECCcc
Confidence 456889999432111 1112234567788899987653322 2222222221 1 24788999986
Q ss_pred CcccCCCHHHHHHHHHHcCCeEEEEe
Q 048709 146 VDMWAVSAEDVVEFAEDQGLFFSEAS 171 (203)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~s 171 (203)
... .-.+.......+.|+..+.
T Consensus 260 ~a~----gg~~l~i~~~~~~pi~~ig 281 (304)
T 1rj9_A 260 TAK----GGVLIPIVRTLKVPIKFVG 281 (304)
T ss_dssp SCC----CTTHHHHHHHHCCCEEEEE
T ss_pred ccc----ccHHHHHHHHHCCCeEEEe
Confidence 431 2245566667788877765
No 370
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.89 E-value=0.00071 Score=47.53 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~ 50 (203)
...|+|+|.+||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998854
No 371
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.88 E-value=0.0006 Score=48.87 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~ 50 (203)
...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 372
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.88 E-value=0.00058 Score=48.32 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~ 50 (203)
...|+++|.+||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998854
No 373
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.88 E-value=0.0005 Score=54.81 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~ 51 (203)
-|+|+|++|||||||++.+.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998763
No 374
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.87 E-value=0.00054 Score=50.65 Aligned_cols=21 Identities=24% Similarity=0.542 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 048709 31 VVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 31 i~vvG~~~sGKStli~~l~~~ 51 (203)
++++|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999863
No 375
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.86 E-value=0.00064 Score=48.02 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 048709 30 KVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~ 50 (203)
-|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 376
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.86 E-value=0.00098 Score=50.25 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHh
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFT 49 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~ 49 (203)
...+.|+|+|.+||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999999999886
No 377
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.86 E-value=0.00051 Score=50.92 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=22.0
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhc
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~ 50 (203)
...+..|+++|++||||||+.+.|..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34457899999999999999998854
No 378
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.86 E-value=0.00056 Score=52.15 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=20.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~ 50 (203)
..--++++|+.||||||+++.|.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345799999999999999998865
No 379
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.84 E-value=0.00065 Score=49.06 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~ 50 (203)
.+.|+|+|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998854
No 380
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.83 E-value=0.0008 Score=48.52 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~ 50 (203)
++.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999865
No 381
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.83 E-value=0.00055 Score=47.94 Aligned_cols=22 Identities=41% Similarity=0.489 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
..|+++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999998854
No 382
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.83 E-value=0.0006 Score=53.83 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~ 51 (203)
.++++|++|||||||++.|.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5899999999999999999874
No 383
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.82 E-value=0.00059 Score=55.82 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~ 51 (203)
-.++|+|++||||||+++.|.+.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35999999999999999999874
No 384
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.82 E-value=0.00076 Score=49.99 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 048709 28 VFKVVVIGDSAVGKSQILSRFT 49 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~ 49 (203)
...|+|+|++||||||+++.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999987
No 385
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.81 E-value=0.00073 Score=46.95 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
..++++|.+|||||||+.+|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 386
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.80 E-value=0.0008 Score=50.07 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
..|+++|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 387
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.80 E-value=0.00095 Score=47.40 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=22.3
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhc
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~ 50 (203)
..+.+.|+++|.+||||||+.+.|..
T Consensus 9 ~~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999998864
No 388
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.80 E-value=0.00029 Score=50.52 Aligned_cols=21 Identities=14% Similarity=0.411 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 048709 30 KVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~ 50 (203)
-|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 389
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.80 E-value=0.00037 Score=54.33 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999998854
No 390
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.77 E-value=0.00078 Score=47.08 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 048709 30 KVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~ 50 (203)
-.+|+|+.|||||||+++|..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999854
No 391
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.77 E-value=0.00079 Score=46.51 Aligned_cols=22 Identities=9% Similarity=0.318 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998854
No 392
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.77 E-value=0.0022 Score=51.42 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=20.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHh
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFT 49 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~ 49 (203)
....=|+|+|+.++|||+|+|.|+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHH
Confidence 355677799999999999999664
No 393
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.77 E-value=0.00057 Score=47.73 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=16.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~ 50 (203)
...|+|.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999863
No 394
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.77 E-value=0.00095 Score=46.55 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~ 50 (203)
...|+++|.+||||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998865
No 395
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.76 E-value=0.00089 Score=48.89 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~ 50 (203)
...|+|+|.+||||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998854
No 396
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.75 E-value=0.00089 Score=46.66 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~ 51 (203)
-.+++.|++|+|||++++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999988653
No 397
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.75 E-value=0.00078 Score=49.97 Aligned_cols=21 Identities=14% Similarity=0.371 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 048709 30 KVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~ 50 (203)
-|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998854
No 398
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.74 E-value=0.00078 Score=48.76 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
--++++|++|+|||||++.+.+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3588999999999999999875
No 399
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.73 E-value=0.00081 Score=50.48 Aligned_cols=21 Identities=24% Similarity=0.542 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 048709 31 VVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 31 i~vvG~~~sGKStli~~l~~~ 51 (203)
++++|++|+|||||++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999863
No 400
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.72 E-value=0.00097 Score=48.84 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=20.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~ 50 (203)
.++.|++.|++||||||+.+.|..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998853
No 401
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.71 E-value=0.00082 Score=51.93 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~ 51 (203)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999998763
No 402
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.70 E-value=0.0007 Score=54.66 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~ 51 (203)
-.++|+|+.|||||||++.|.+-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 47999999999999999998774
No 403
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.69 E-value=0.004 Score=41.77 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~ 51 (203)
...|++.|++|+|||++.+.+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 356999999999999999888653
No 404
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.68 E-value=0.0011 Score=48.28 Aligned_cols=26 Identities=12% Similarity=0.286 Sum_probs=20.2
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhc
Q 048709 25 IDYVFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 25 ~~~~~~i~vvG~~~sGKStli~~l~~ 50 (203)
..+.++++|+|+|||||||+...|..
T Consensus 5 ~~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 5 HHHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ----CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccccceeeECCCCCCHHHHHHHHHH
Confidence 34579999999999999999998743
No 405
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.67 E-value=0.0012 Score=45.55 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=19.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~ 50 (203)
.-.|+|.|.+||||||+.+.|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998843
No 406
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.66 E-value=0.00095 Score=52.10 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=20.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~ 50 (203)
..--|+++|+.||||||+++.|.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 345799999999999999998865
No 407
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.63 E-value=0.00096 Score=50.51 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~ 51 (203)
-++|+|++|+|||||++.+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 408
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.60 E-value=0.0011 Score=53.82 Aligned_cols=84 Identities=14% Similarity=0.133 Sum_probs=46.7
Q ss_pred EEEEEEeCCCchhhhh-hhH------hhh-----cCCcEEEEEEeCCCHHH-HHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 048709 77 IKAQIWDTAGQERYRA-VTS------AYY-----RGALGAVVVYDITKRQS-FDHVARGVEELRAHADSSIRIILIGNKS 143 (203)
Q Consensus 77 ~~~~l~D~~g~~~~~~-~~~------~~~-----~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 143 (203)
+.+.++||+|...... +.. ... ...+-+++|+|+..... ...+ ..+.... + ...+|+||.
T Consensus 376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~a----k~f~~~~--~-itgvIlTKL 448 (503)
T 2yhs_A 376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQA----KLFHEAV--G-LTGITLTKL 448 (503)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHH----HHHHHHT--C-CSEEEEECG
T ss_pred CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHH----HHHHhhc--C-CCEEEEEcC
Confidence 4578999999532111 110 111 12457888999876432 2222 2222221 1 135789999
Q ss_pred CCCcccCCCHHHHHHHHHHcCCeEEEEe
Q 048709 144 DLVDMWAVSAEDVVEFAEDQGLFFSEAS 171 (203)
Q Consensus 144 D~~~~~~~~~~~~~~~~~~~~~~~~~~s 171 (203)
|... ..-.+..++...+.++..+.
T Consensus 449 D~ta----kgG~~lsi~~~~~~PI~fig 472 (503)
T 2yhs_A 449 DGTA----KGGVIFSVADQFGIPIRYIG 472 (503)
T ss_dssp GGCS----CCTHHHHHHHHHCCCEEEEE
T ss_pred CCcc----cccHHHHHHHHHCCCEEEEe
Confidence 9632 23356777778888877654
No 409
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.59 E-value=0.00083 Score=51.58 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~ 51 (203)
-++|+|+.|||||||++.|.+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 5789999999999999999865
No 410
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.59 E-value=0.0015 Score=46.92 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~ 50 (203)
...|+++|.+||||||+.+.|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 411
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.58 E-value=0.0012 Score=51.33 Aligned_cols=24 Identities=25% Similarity=0.417 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~ 52 (203)
=+++++|++|+|||||++.+.+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999998853
No 412
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.58 E-value=0.0012 Score=48.85 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~ 50 (203)
+-.++++|++|+|||++++.+.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 34599999999999999999875
No 413
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.58 E-value=0.0014 Score=44.45 Aligned_cols=19 Identities=32% Similarity=0.583 Sum_probs=17.2
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 048709 31 VVVIGDSAVGKSQILSRFT 49 (203)
Q Consensus 31 i~vvG~~~sGKStli~~l~ 49 (203)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5799999999999999874
No 414
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.57 E-value=0.0012 Score=47.34 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
--++++|++|+|||||+..+..
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999987
No 415
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.56 E-value=0.0014 Score=54.08 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~ 52 (203)
=.++++|+.|||||||++.|.+..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998853
No 416
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.55 E-value=0.0013 Score=47.99 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~ 51 (203)
--++++|++|+|||||+..+...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999873
No 417
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.54 E-value=0.0012 Score=48.91 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~ 50 (203)
.-.|+++|++||||||+.+.|..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998854
No 418
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.54 E-value=0.0011 Score=46.09 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~ 51 (203)
.-.+++.|++|+|||++++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346799999999999999988653
No 419
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.52 E-value=0.0016 Score=49.31 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
..|+++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999875
No 420
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.0029 Score=45.96 Aligned_cols=89 Identities=11% Similarity=0.040 Sum_probs=46.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEE-eCCC-chhhh----h-hhHhhh
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIW-DTAG-QERYR----A-VTSAYY 98 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-D~~g-~~~~~----~-~~~~~~ 98 (203)
.+.+-|++-|+++.||++|++++++....... ......+...+-...+-|| |.-. ...+. + -.....
T Consensus 27 ~nkilvl~~~~~~~~~~~~~~~lf~~~~~~~~------i~k~v~w~TKYYsa~V~IwVDe~~~l~~W~~EF~SdEA~EVR 100 (233)
T 3uc9_A 27 QNKILVLSDHPHNFLKTQFLQDLFHCSSTGIS------IVKDQTWENRYYKVHFDLYIDSCKDIPVWVEEFITPECEPLR 100 (233)
T ss_dssp CCEEEEEEEGGGHHHHHHHHHHHHCCCCCSSC------EEEEEEEECSSCEEEEEEEEEEESCHHHHHHHHTSGGGHHHH
T ss_pred CCceEEEecCcccccHHHHHHHHhcccccccc------cccCCeeeeceEEEEcceEEEecCCHHHHHHHhcCHHHHHHH
Confidence 34566666699999999999999987422111 0111222223333444444 4432 11111 0 011123
Q ss_pred cCCcEEEEEEeCCCHHHHHHHH
Q 048709 99 RGALGAVVVYDITKRQSFDHVA 120 (203)
Q Consensus 99 ~~~d~~i~v~d~~~~~s~~~~~ 120 (203)
...+++|+||+...++..+.+.
T Consensus 101 ~viggII~~f~~p~~~~~~~i~ 122 (233)
T 3uc9_A 101 NVMAGIILITDIRQTKPQELLH 122 (233)
T ss_dssp HTEEEEEEEECHHHHCGGGTHH
T ss_pred HhcceEEEEEeCCCcchHHHHH
Confidence 3457899999866554443333
No 421
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.51 E-value=0.0018 Score=47.24 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=21.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~ 51 (203)
...-|++.|++||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4478999999999999999998653
No 422
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.51 E-value=0.0016 Score=47.32 Aligned_cols=23 Identities=13% Similarity=0.284 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~ 50 (203)
.-.+++.|++|+|||+|++.+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998865
No 423
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.51 E-value=0.00029 Score=47.56 Aligned_cols=25 Identities=12% Similarity=0.072 Sum_probs=21.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~ 51 (203)
....|++.|++|+|||++.+.+...
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHh
Confidence 3456999999999999999999764
No 424
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.50 E-value=0.0013 Score=53.20 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
=.++|+|+.|||||||++.|.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 3579999999999999999865
No 425
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.49 E-value=0.0017 Score=46.17 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~ 51 (203)
..+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999988763
No 426
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.48 E-value=0.0015 Score=54.42 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~ 51 (203)
.++++|+.|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 6899999999999999999874
No 427
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.48 E-value=0.0014 Score=53.91 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~ 52 (203)
=-++++|+.|||||||++.|.+..
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 357999999999999999998853
No 428
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.46 E-value=0.0013 Score=47.09 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
-.+++.|+||+|||+++.++..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999888765
No 429
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.45 E-value=0.0015 Score=51.29 Aligned_cols=24 Identities=13% Similarity=0.088 Sum_probs=21.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~ 50 (203)
..-.++++|++|+|||||++.|.+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999999876
No 430
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.43 E-value=0.0017 Score=54.07 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~ 51 (203)
=.++++|+.|||||||++.+.+-
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
No 431
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.40 E-value=0.0017 Score=52.02 Aligned_cols=24 Identities=25% Similarity=0.381 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~ 52 (203)
=+++++|++|||||||++.|.+..
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 478999999999999999998753
No 432
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.0018 Score=54.11 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~ 52 (203)
=.++++|+.|+|||||++.|.+..
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 368999999999999999998754
No 433
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.36 E-value=0.0015 Score=54.53 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~ 51 (203)
.++++|+.|||||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 434
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.33 E-value=0.0025 Score=48.31 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=20.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~ 50 (203)
.+.-+++.|+||+|||+|.+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346788889999999999999865
No 435
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.33 E-value=0.0016 Score=54.30 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~ 51 (203)
=.++++|++|||||||++.+.+-
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 37899999999999999998774
No 436
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.32 E-value=0.0024 Score=46.64 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~ 50 (203)
....|+|+|.+||||||+.+.|..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998864
No 437
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.31 E-value=0.002 Score=53.02 Aligned_cols=23 Identities=13% Similarity=0.315 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
.++++|+.|||||||++.|.+..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998854
No 438
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.30 E-value=0.0022 Score=50.16 Aligned_cols=19 Identities=32% Similarity=0.538 Sum_probs=17.3
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 048709 31 VVVIGDSAVGKSQILSRFT 49 (203)
Q Consensus 31 i~vvG~~~sGKStli~~l~ 49 (203)
.+|+|+.|||||||+++++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5599999999999999986
No 439
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.30 E-value=0.0023 Score=53.50 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~~ 52 (203)
=.++++|+.|||||||++.|.+..
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 468999999999999999998754
No 440
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.29 E-value=0.0015 Score=50.55 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 048709 31 VVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 31 i~vvG~~~sGKStli~~l~~ 50 (203)
++++|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998876
No 441
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.29 E-value=0.0021 Score=48.52 Aligned_cols=23 Identities=13% Similarity=0.263 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~ 50 (203)
.-.+++.|++|+|||++++.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 45799999999999999999976
No 442
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.29 E-value=0.0024 Score=52.59 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
.++|+|+.|||||||++.|.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998854
No 443
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.29 E-value=0.0021 Score=48.27 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
--++|+|++|+|||||+..+.+
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 444
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.26 E-value=0.0014 Score=54.43 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~ 51 (203)
.++++|++|||||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6899999999999999988763
No 445
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.25 E-value=0.0024 Score=46.11 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 048709 30 KVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~ 50 (203)
-++|.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 446
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.24 E-value=0.0028 Score=46.74 Aligned_cols=24 Identities=13% Similarity=0.246 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~ 50 (203)
....|++.|++|+|||++++.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999999875
No 447
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.23 E-value=0.0024 Score=47.88 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~ 51 (203)
.-.+++.|++|+|||++++++...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456999999999999999999653
No 448
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.22 E-value=0.0026 Score=45.36 Aligned_cols=21 Identities=14% Similarity=0.343 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 048709 30 KVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~ 50 (203)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999998865
No 449
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.21 E-value=0.0025 Score=48.45 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~ 50 (203)
.-.|++.|++|+|||+|++.+.+
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHH
Confidence 35699999999999999999976
No 450
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.21 E-value=0.0042 Score=49.47 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~ 50 (203)
...-|+++|.+||||||+.+.|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999875
No 451
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.21 E-value=0.0028 Score=52.93 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
.++++|+.|||||||++.|.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998854
No 452
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.19 E-value=0.0019 Score=53.77 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~ 51 (203)
.++++|++|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999988763
No 453
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.19 E-value=0.0031 Score=44.80 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 048709 30 KVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~ 50 (203)
.|++.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 454
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.16 E-value=0.0027 Score=48.64 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~ 50 (203)
.-.+++.|++|+|||+|++.+.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 34689999999999999999876
No 455
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.15 E-value=0.0037 Score=47.38 Aligned_cols=24 Identities=13% Similarity=0.338 Sum_probs=20.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~ 50 (203)
....+++.|++|+|||++++.+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999986654
No 456
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.13 E-value=0.0025 Score=49.19 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 048709 31 VVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 31 i~vvG~~~sGKStli~~l~~~ 51 (203)
+++.|++|+|||++++.+...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999988764
No 457
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.12 E-value=0.0028 Score=49.30 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~ 51 (203)
.--+.|+|++|||||||++.+.+.
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999874
No 458
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.11 E-value=0.0045 Score=46.13 Aligned_cols=26 Identities=15% Similarity=0.359 Sum_probs=22.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~~ 51 (203)
.....+++.|++|+|||++++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34578999999999999999998763
No 459
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.0031 Score=52.66 Aligned_cols=23 Identities=17% Similarity=0.434 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 048709 31 VVVIGDSAVGKSQILSRFTKNEF 53 (203)
Q Consensus 31 i~vvG~~~sGKStli~~l~~~~~ 53 (203)
++++|+.|||||||++.|.+...
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 79999999999999999988543
No 460
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.10 E-value=0.003 Score=47.99 Aligned_cols=85 Identities=14% Similarity=0.112 Sum_probs=48.3
Q ss_pred EEEEEEeCCCchhhhh-hh---Hhhhc--CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC
Q 048709 77 IKAQIWDTAGQERYRA-VT---SAYYR--GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA 150 (203)
Q Consensus 77 ~~~~l~D~~g~~~~~~-~~---~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 150 (203)
..+.|+||+|...... .. ...+. ..+.+++|++++.. ...+..+...+. ..+ ..-+|+||.|...
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~---~l~-~~giVltk~D~~~--- 253 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS---SVP-VNQYIFTKIDETT--- 253 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS---SSC-CCEEEEECTTTCS---
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh---cCC-CCEEEEeCCCccc---
Confidence 4688999999654322 11 12222 35778889987653 222333222221 111 2356679999754
Q ss_pred CCHHHHHHHHHHcCCeEEEEe
Q 048709 151 VSAEDVVEFAEDQGLFFSEAS 171 (203)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~s 171 (203)
....+...+...++|+..+.
T Consensus 254 -~~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 254 -SLGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp -CCHHHHHHHHTCSCCCSEEC
T ss_pred -chhHHHHHHHHHCcCEEEEE
Confidence 23467777888888876554
No 461
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.08 E-value=0.00048 Score=50.30 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 048709 31 VVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 31 i~vvG~~~sGKStli~~l~~~~ 52 (203)
++|+|+.|||||||++.+.+-.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 5789999999999999987643
No 462
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.07 E-value=0.011 Score=41.80 Aligned_cols=85 Identities=14% Similarity=0.005 Sum_probs=55.9
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCcccCCCHH
Q 048709 77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHA--DSSIRIILIGNKSDLVDMWAVSAE 154 (203)
Q Consensus 77 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~ 154 (203)
+.+.++|+|+.. .......+..+|.+++++..+... ..+...+..+.... .++.++.+|+|++|.... ...
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~ 148 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN 148 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence 578899999855 233445667799999999887544 55556666665443 245678999999996431 224
Q ss_pred HHHHHHHHcCCeEE
Q 048709 155 DVVEFAEDQGLFFS 168 (203)
Q Consensus 155 ~~~~~~~~~~~~~~ 168 (203)
++.+++...+.+++
T Consensus 149 ~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 149 VLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHTCCBC
T ss_pred HHHHHHHHcCCcee
Confidence 45566665665544
No 463
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.05 E-value=0.0038 Score=44.45 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~~ 52 (203)
...|+|+|++|+|||+|...|...-
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3568999999999999999997643
No 464
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.04 E-value=0.0042 Score=43.52 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 048709 31 VVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 31 i~vvG~~~sGKStli~~l~~~ 51 (203)
++|+|.++||||+|..+|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999754
No 465
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.04 E-value=0.0036 Score=45.65 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
--++++|++|+|||||+..+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999887754
No 466
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.02 E-value=0.0042 Score=44.41 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=17.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 048709 30 KVVVIGDSAVGKSQILSRFT 49 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~ 49 (203)
-.+|+|+.|+||||++.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 45788999999999999873
No 467
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.00 E-value=0.0057 Score=46.33 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 048709 29 FKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~~ 51 (203)
-.++++|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999988763
No 468
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.00 E-value=0.0034 Score=48.82 Aligned_cols=24 Identities=13% Similarity=0.261 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~ 51 (203)
.-.++|.|++|+|||||++.+...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998763
No 469
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.99 E-value=0.0042 Score=54.50 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNEF 53 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~~ 53 (203)
.++++|+.|||||||++.|.++.+
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999997654
No 470
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.93 E-value=0.0052 Score=44.98 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~ 50 (203)
...|++.|..||||||+++.|..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999865
No 471
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.93 E-value=0.0042 Score=46.96 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~ 50 (203)
...+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 472
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.93 E-value=0.0045 Score=48.35 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~ 51 (203)
.++|.|++|+||||+++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998764
No 473
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.92 E-value=0.006 Score=46.76 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=21.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~ 50 (203)
....|++.|++|+|||+|++++..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 346799999999999999999965
No 474
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.92 E-value=0.0032 Score=46.78 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~ 50 (203)
+...|+|.|..||||||+++.|..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988765
No 475
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.88 E-value=0.0043 Score=47.90 Aligned_cols=22 Identities=14% Similarity=0.436 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~ 51 (203)
.+++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999988764
No 476
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.88 E-value=0.0045 Score=44.47 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
+.|+++|++||||||+.+.|..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998754
No 477
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.87 E-value=0.0029 Score=55.47 Aligned_cols=23 Identities=30% Similarity=0.562 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKNE 52 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~~ 52 (203)
.++|+|+.|||||||++.|.+..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998853
No 478
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.86 E-value=0.0045 Score=47.54 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~ 51 (203)
.-.|++.|++|+|||+|++++...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 357999999999999999998763
No 479
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.85 E-value=0.0059 Score=48.83 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=22.0
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhc
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~ 50 (203)
..+--|++.|+||+|||+|.+++.+
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHH
Confidence 3456899999999999999999976
No 480
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.85 E-value=0.0062 Score=46.75 Aligned_cols=22 Identities=18% Similarity=0.427 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
..|+|+|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 481
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.83 E-value=0.0026 Score=48.20 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=16.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
+-|+|.|++||||||+.+.|..
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999998754
No 482
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.82 E-value=0.005 Score=47.57 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
.-|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4699999999999999998854
No 483
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.81 E-value=0.0061 Score=47.36 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~ 50 (203)
..+|+++|++|+||||+.+.|..
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHH
Confidence 36899999999999999987644
No 484
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.77 E-value=0.0065 Score=48.49 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=21.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~ 50 (203)
.+--|++.|+||+|||+|++++.+
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999999875
No 485
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.76 E-value=0.0032 Score=57.30 Aligned_cols=21 Identities=24% Similarity=0.570 Sum_probs=0.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 048709 30 KVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~ 50 (203)
+|++||++|||||||++.|.+
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhc
No 486
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.76 E-value=0.0041 Score=51.32 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~ 51 (203)
....|+|+|++|||||||.+.|.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 3467999999999999999998764
No 487
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.72 E-value=0.0024 Score=47.43 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 048709 30 KVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~ 50 (203)
.+++.|++|+|||+|++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999999875
No 488
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.69 E-value=0.0058 Score=48.39 Aligned_cols=21 Identities=24% Similarity=0.320 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 048709 29 FKVVVIGDSAVGKSQILSRFT 49 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~ 49 (203)
=-++|+|++|+|||||+..|.
T Consensus 179 ei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHH
Confidence 468999999999999999775
No 489
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.68 E-value=0.0075 Score=48.26 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=21.9
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhc
Q 048709 26 DYVFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 26 ~~~~~i~vvG~~~sGKStli~~l~~ 50 (203)
..+--|++.|+||+|||+|++++.+
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3456899999999999999999876
No 490
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.68 E-value=0.005 Score=47.93 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~~ 51 (203)
..-.++|.|++|+|||++++.+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998753
No 491
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.66 E-value=0.0058 Score=44.53 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=17.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~ 50 (203)
...-|+|.|++||||||+++.|..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999998864
No 492
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.66 E-value=0.0056 Score=50.47 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 048709 29 FKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 29 ~~i~vvG~~~sGKStli~~l~~ 50 (203)
-.++++|++|+|||||++.+.+
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998865
No 493
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.65 E-value=0.0069 Score=46.22 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~ 50 (203)
.-.+++.|++|+|||+|+.++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998865
No 494
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.64 E-value=0.0059 Score=49.78 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 048709 30 KVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~~ 51 (203)
-|+++|++|+|||+|++.+.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999763
No 495
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.64 E-value=0.007 Score=46.22 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 048709 30 KVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 30 ~i~vvG~~~sGKStli~~l~~ 50 (203)
-|+|+|++|||||||...|..
T Consensus 5 ~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 588999999999999999864
No 496
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.63 E-value=0.0087 Score=43.44 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=21.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709 27 YVFKVVVIGDSAVGKSQILSRFTK 50 (203)
Q Consensus 27 ~~~~i~vvG~~~sGKStli~~l~~ 50 (203)
...-|++.|.+||||||+++.|..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998864
No 497
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.63 E-value=0.12 Score=37.44 Aligned_cols=87 Identities=15% Similarity=0.081 Sum_probs=58.6
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHH
Q 048709 77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDV 156 (203)
Q Consensus 77 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 156 (203)
+.+.++|+|+... ......+..+|.+++++..+ ..+...+...++.+.........+.+|+|+++... ....+++
T Consensus 119 yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~~~~ 193 (245)
T 3ea0_A 119 YDYIIVDFGASID--HVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITSDEI 193 (245)
T ss_dssp CSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCHHHH
T ss_pred CCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCHHHH
Confidence 5688999987542 23445677899999998876 56677777777777655434556889999998654 3344443
Q ss_pred HHHHHHcCCeEEEEe
Q 048709 157 VEFAEDQGLFFSEAS 171 (203)
Q Consensus 157 ~~~~~~~~~~~~~~s 171 (203)
....+.+++.+-
T Consensus 194 ---~~~~~~~v~~~i 205 (245)
T 3ea0_A 194 ---EKVIGRPISKRI 205 (245)
T ss_dssp ---HHHHTSCEEEEE
T ss_pred ---HHHhCCCeEEEC
Confidence 334566766553
No 498
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.63 E-value=0.0057 Score=50.20 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=0.0
Q ss_pred EEEEcCCCCcHHHHHHH--Hhc
Q 048709 31 VVVIGDSAVGKSQILSR--FTK 50 (203)
Q Consensus 31 i~vvG~~~sGKStli~~--l~~ 50 (203)
++|+|++|||||||++. +.+
T Consensus 42 ~~l~G~nGsGKSTL~~~~ll~G 63 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFLYNG 63 (525)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
No 499
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.62 E-value=0.007 Score=46.79 Aligned_cols=18 Identities=33% Similarity=0.656 Sum_probs=16.5
Q ss_pred EEEcCCCCcHHHHHHHHh
Q 048709 32 VVIGDSAVGKSQILSRFT 49 (203)
Q Consensus 32 ~vvG~~~sGKStli~~l~ 49 (203)
+|+|+.|+||||++.++.
T Consensus 27 ~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 27 LIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 699999999999999874
No 500
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.61 E-value=0.0069 Score=44.90 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 048709 28 VFKVVVIGDSAVGKSQILSRFTKN 51 (203)
Q Consensus 28 ~~~i~vvG~~~sGKStli~~l~~~ 51 (203)
...|++.|++|+|||++.+.+...
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCCEEEECCCCCcHHHHHHHHHHh
Confidence 357999999999999999999764
Done!