BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048710
(208 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 108 DQTYMTTQVQGTFGYLDLQYFQSSPFTEKSNLLT 141
DQT++ V+GT GY+D +YF TEKS++ +
Sbjct: 193 DQTHLXXVVKGTLGYIDPEYFIKGRLTEKSDVYS 226
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 34.7 bits (78), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 109 QTYMTTQVQGTFGYLDLQYFQSSPFTEKSNLLT 141
QT++ V+GT GY+D +YF TEKS++ +
Sbjct: 194 QTHLXXVVKGTLGYIDPEYFIKGRLTEKSDVYS 226
>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain
From D. Discoideum Bound To Appcp
Length = 287
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 11/78 (14%)
Query: 47 KVNKLINEVVILSQINLETEVLL---------LVYEFISNGTVYQYINNQNEEFPIAWEM 97
K + EV I+S +N V L +V EF+ G +Y + ++ PI W +
Sbjct: 66 KFQEFQREVFIMSNLNHPNIVKLYGLMHNPPRMVMEFVPCGDLYHRL--LDKAHPIKWSV 123
Query: 98 QLHIVVDSLADQTYMTTQ 115
+L +++D YM Q
Sbjct: 124 KLRLMLDIALGIEYMQNQ 141
>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound
To Appcp From D. Discoideum
Length = 287
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 11/78 (14%)
Query: 47 KVNKLINEVVILSQINLETEVLL---------LVYEFISNGTVYQYINNQNEEFPIAWEM 97
K + EV I+S +N V L +V EF+ G +Y + ++ PI W +
Sbjct: 66 KFQEFQREVFIMSNLNHPNIVKLYGLMHNPPRMVMEFVPCGDLYHRL--LDKAHPIKWSV 123
Query: 98 QLHIVVDSLADQTYMTTQ 115
+L +++D YM Q
Sbjct: 124 KLRLMLDIALGIEYMQNQ 141
>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
Appcp From D. Discoideum
pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum
pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum Bound To The Rock Inhibitor H1152
Length = 287
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 11/78 (14%)
Query: 47 KVNKLINEVVILSQINLETEVLL---------LVYEFISNGTVYQYINNQNEEFPIAWEM 97
K + EV I+S +N V L +V EF+ G +Y + ++ PI W +
Sbjct: 66 KFQEFQREVFIMSNLNHPNIVKLYGLMHNPPRMVMEFVPCGDLYHRL--LDKAHPIKWSV 123
Query: 98 QLHIVVDSLADQTYMTTQ 115
+L +++D YM Q
Sbjct: 124 KLRLMLDIALGIEYMQNQ 141
>pdb|1BOL|A Chain A, The Crystal Structure Of Ribonuclease Rh From Rhizopus
Niveus At 2.0 A Resolution
Length = 222
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 128 FQSSPFTEKSNLLTKEKPICLTTYEENKSLTTYFLRAM---KEDRLFEIFDGLVLKEGG 183
F S +++ ++ P C YEE + + YF +AM + +++ F + GG
Sbjct: 101 FWSHEWSKHGTCVSTYDPDCYDNYEEGEDIVDYFQKAMDLRSQYNVYKAFSSNGITPGG 159
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 28.5 bits (62), Expect = 2.6, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 12/82 (14%)
Query: 72 YEFISNGTVYQYINNQNEEFPIAWEMQLHIVVDSLA---------DQTYMTTQVQGTFGY 122
Y+F NG +Y + E P E++ + +D LA T+ + +Q Y
Sbjct: 1685 YKFFHNGMIYNKLFVSKEHAPYTDELEEDVYLDPLARVSKDKKSGSLTFNSKNIQSKDSY 1744
Query: 123 LDLQYFQSSPFTEKSNLLTKEK 144
++ +++ E +TKEK
Sbjct: 1745 INANTIETAKMIEN---MTKEK 1763
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 28.5 bits (62), Expect = 2.6, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 12/82 (14%)
Query: 72 YEFISNGTVYQYINNQNEEFPIAWEMQLHIVVDSLA---------DQTYMTTQVQGTFGY 122
Y+F NG +Y + E P E++ + +D LA T+ + +Q Y
Sbjct: 1685 YKFFHNGMIYNKLFVSKEHAPYTDELEEDVYLDPLARVSKDKKSGSLTFNSKNIQSKDSY 1744
Query: 123 LDLQYFQSSPFTEKSNLLTKEK 144
++ +++ E +TKEK
Sbjct: 1745 INANTIETAKMIEN---MTKEK 1763
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,029,448
Number of Sequences: 62578
Number of extensions: 192749
Number of successful extensions: 391
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 387
Number of HSP's gapped (non-prelim): 10
length of query: 208
length of database: 14,973,337
effective HSP length: 94
effective length of query: 114
effective length of database: 9,091,005
effective search space: 1036374570
effective search space used: 1036374570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)