BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048713
(324 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J0A|A Chain A, Structure Of The Catalytic Domain Of Mouse Manic Fringe
pdb|2J0B|A Chain A, Structure Of The Catalytic Domain Of Mouse Manic Fringe In
Complex With Udp And Manganese
Length = 280
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 12/88 (13%)
Query: 74 WDSFKLNLPNVRWFVMGDDDTVFFTDNLLSVLTRYDHNQMWYIGCNS----------ESV 123
+D+F ++ +RWF DDD LL +L + ++ Y+G S +S
Sbjct: 86 FDAFLVS--GLRWFCHVDDDNYVNPKALLQLLKTFPQDRDVYVGKPSLNRPIHASELQSK 143
Query: 124 EQNVMHAYDMAFGGGGFAVSYPLAEKLV 151
++ + + A GG GF ++ LA K+V
Sbjct: 144 QRTKLVRFWFATGGAGFCINRQLALKMV 171
>pdb|1JVB|A Chain A, Alcohol Dehydrogenase From The Archaeon Sulfolobus
Solfataricus
Length = 347
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 199 GLLGA--HPIAPLVTLHHIDYLNSLFPNRTQLDSLETLIHAYRIDP 242
GL GA H APL+TL I ++ SL N++ + L A ++ P
Sbjct: 271 GLFGADLHYHAPLITLSEIQFVGSLVGNQSDFLGIXRLAEAGKVKP 316
>pdb|1NTO|A Chain A, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon
Sulfolobus Solfataricus-Monoclinic Crystal Form
pdb|1NTO|B Chain B, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon
Sulfolobus Solfataricus-Monoclinic Crystal Form
pdb|1NTO|C Chain C, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon
Sulfolobus Solfataricus-Monoclinic Crystal Form
pdb|1NTO|D Chain D, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon
Sulfolobus Solfataricus-Monoclinic Crystal Form
pdb|1NTO|E Chain E, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon
Sulfolobus Solfataricus-Monoclinic Crystal Form
pdb|1NTO|H Chain H, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon
Sulfolobus Solfataricus-Monoclinic Crystal Form
pdb|1NVG|A Chain A, N249y Mutant Of The Alcohol Dehydrogenase From The
Archaeon Sulfolobus Solfataricus-tetragonal Crystal Form
Length = 347
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 199 GLLGA--HPIAPLVTLHHIDYLNSLFPNRTQLDSLETLIHAYRIDP 242
GL GA H APL+TL I ++ SL N++ + L A ++ P
Sbjct: 271 GLFGADLHYHAPLITLSEIQFVGSLVGNQSDFLGIMRLAEAGKVKP 316
>pdb|1R37|A Chain A, Alcohol Dehydrogenase From Sulfolobus Solfataricus
Complexed With Nad(H) And 2-Ethoxyethanol
pdb|1R37|B Chain B, Alcohol Dehydrogenase From Sulfolobus Solfataricus
Complexed With Nad(H) And 2-Ethoxyethanol
Length = 347
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 199 GLLGA--HPIAPLVTLHHIDYLNSLFPNRTQLDSLETLIHAYRIDP 242
GL GA H APL+TL I ++ SL N++ + L A ++ P
Sbjct: 271 GLFGADLHYHAPLITLSEIQFVGSLVGNQSDFLGIMRLAEAGKVKP 316
>pdb|3I4C|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
Double Mutant (W95l,N249y)
pdb|3I4C|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
Double Mutant (W95l,N249y)
pdb|3I4C|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
Double Mutant (W95l,N249y)
pdb|3I4C|D Chain D, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
Double Mutant (W95l,N249y)
pdb|3I4C|E Chain E, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
Double Mutant (W95l,N249y)
pdb|3I4C|H Chain H, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
Double Mutant (W95l,N249y)
Length = 347
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 199 GLLGA--HPIAPLVTLHHIDYLNSLFPNRTQLDSLETLIHAYRIDP 242
GL GA H APL+TL I ++ SL N++ + L A ++ P
Sbjct: 271 GLFGADLHYHAPLITLSEIQFVGSLVGNQSDFLGIMRLAEAGKVKP 316
>pdb|2EER|A Chain A, Structural Study Of Project Id St2577 From Sulfolobus
Tokodaii Strain7
pdb|2EER|B Chain B, Structural Study Of Project Id St2577 From Sulfolobus
Tokodaii Strain7
Length = 347
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 207 APLVTLHHIDYLNSLFPNRTQLDSLETLIHAYRIDP 242
APL+TL+ + ++ SL N++ + +L A ++ P
Sbjct: 281 APLITLNEVQFIGSLVGNQSDFLGIMSLAEAGKVKP 316
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 190 QLDIRGDPYGLLGAHPIAPLVTLHHIDYLNSLFPNRTQLDSLETL 234
+LD+ G+P + A +AP L ++ +++ L+SL TL
Sbjct: 38 ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTL 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.467
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,544,838
Number of Sequences: 62578
Number of extensions: 430762
Number of successful extensions: 1132
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1127
Number of HSP's gapped (non-prelim): 8
length of query: 324
length of database: 14,973,337
effective HSP length: 99
effective length of query: 225
effective length of database: 8,778,115
effective search space: 1975075875
effective search space used: 1975075875
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)