Query 048713
Match_columns 324
No_of_seqs 278 out of 894
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 12:18:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048713.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048713hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03153 hypothetical protein; 100.0 2.3E-95 5E-100 721.1 26.3 317 1-322 130-450 (537)
2 PF04646 DUF604: Protein of un 100.0 5.3E-66 1.2E-70 473.2 16.8 199 125-323 1-200 (255)
3 KOG2246 Galactosyltransferases 100.0 7.6E-48 1.6E-52 375.0 12.3 266 1-291 81-363 (364)
4 PF02434 Fringe: Fringe-like; 99.9 4.7E-28 1E-32 226.1 9.4 194 3-216 16-232 (252)
5 KOG3708 Uncharacterized conser 99.4 1.8E-12 3.8E-17 129.0 8.5 147 63-217 77-232 (681)
6 KOG2287 Galactosyltransferases 99.2 2.1E-10 4.5E-15 112.2 13.4 144 65-219 170-329 (349)
7 PF01762 Galactosyl_T: Galacto 99.1 2.5E-10 5.5E-15 102.1 10.7 116 65-186 63-195 (195)
8 PLN03193 beta-1,3-galactosyltr 99.1 1E-09 2.2E-14 108.3 11.3 119 66-190 221-355 (408)
9 PLN03133 beta-1,3-galactosyltr 99.0 2.3E-09 5.1E-14 111.2 14.0 113 66-183 460-590 (636)
10 PTZ00210 UDP-GlcNAc-dependent 98.8 5.8E-08 1.3E-12 94.9 13.9 147 66-218 183-346 (382)
11 KOG2288 Galactosyltransferases 98.3 1.5E-06 3.1E-11 80.9 8.0 109 67-181 94-216 (274)
12 cd04186 GT_2_like_c Subfamily 95.4 0.09 1.9E-06 43.5 8.1 84 83-186 74-158 (166)
13 PF13506 Glyco_transf_21: Glyc 95.3 0.15 3.3E-06 45.0 9.8 99 82-186 30-147 (175)
14 cd02520 Glucosylceramide_synth 94.4 0.13 2.8E-06 45.2 6.9 83 82-184 85-168 (196)
15 PF13641 Glyco_tranf_2_3: Glyc 94.1 0.29 6.3E-06 43.4 8.6 95 83-184 86-201 (228)
16 PF05679 CHGN: Chondroitin N-a 93.9 0.049 1.1E-06 56.1 3.6 65 153-218 1-70 (499)
17 cd02526 GT2_RfbF_like RfbF is 92.1 0.77 1.7E-05 40.8 8.1 97 83-184 75-195 (237)
18 PF01755 Glyco_transf_25: Glyc 91.1 0.79 1.7E-05 40.5 7.1 81 71-154 76-189 (200)
19 PF13632 Glyco_trans_2_3: Glyc 91.0 0.53 1.2E-05 40.9 5.8 92 86-184 1-115 (193)
20 cd04185 GT_2_like_b Subfamily 90.0 1.2 2.6E-05 38.7 7.2 85 82-182 78-163 (202)
21 cd06532 Glyco_transf_25 Glycos 89.4 0.84 1.8E-05 38.0 5.4 46 71-155 73-118 (128)
22 cd06420 GT2_Chondriotin_Pol_N 89.0 1.6 3.4E-05 37.0 7.0 92 82-182 78-169 (182)
23 cd06421 CESA_CelA_like CESA_Ce 88.8 0.93 2E-05 40.0 5.7 93 83-182 84-200 (234)
24 cd06434 GT2_HAS Hyaluronan syn 88.1 1.4 3.1E-05 39.0 6.4 27 83-109 77-103 (235)
25 TIGR01556 rhamnosyltran L-rham 87.9 2.1 4.4E-05 39.8 7.5 99 82-186 72-194 (281)
26 cd06437 CESA_CaSu_A2 Cellulose 87.1 1.2 2.6E-05 39.8 5.3 95 82-183 86-203 (232)
27 cd04188 DPG_synthase DPG_synth 87.0 8.7 0.00019 33.7 10.7 98 83-186 82-201 (211)
28 cd06436 GlcNAc-1-P_transferase 87.0 1.5 3.3E-05 38.3 5.8 67 83-150 89-178 (191)
29 cd06435 CESA_NdvC_like NdvC_li 86.5 4.7 0.0001 35.8 8.9 102 75-183 76-199 (236)
30 cd06427 CESA_like_2 CESA_like_ 86.1 1.2 2.5E-05 40.4 4.7 94 83-183 84-202 (241)
31 PRK11204 N-glycosyltransferase 85.9 1.8 3.8E-05 42.8 6.2 98 82-186 133-253 (420)
32 TIGR03469 HonB hopene-associat 85.2 3 6.5E-05 41.1 7.4 97 82-183 132-252 (384)
33 cd04195 GT2_AmsE_like GT2_AmsE 83.3 1.8 3.9E-05 37.4 4.5 96 82-184 79-192 (201)
34 cd04192 GT_2_like_e Subfamily 82.4 3.2 6.9E-05 36.3 5.8 94 82-180 81-195 (229)
35 PRK14583 hmsR N-glycosyltransf 82.3 2.6 5.6E-05 42.4 5.7 98 82-186 154-274 (444)
36 cd06438 EpsO_like EpsO protein 82.0 1.9 4.2E-05 37.1 4.2 38 82-119 80-117 (183)
37 cd02522 GT_2_like_a GT_2_like_ 81.7 5.7 0.00012 34.7 7.1 92 83-182 72-176 (221)
38 cd02525 Succinoglycan_BP_ExoA 81.1 6.2 0.00013 34.9 7.2 94 83-182 81-197 (249)
39 cd04184 GT2_RfbC_Mx_like Myxoc 80.0 8.7 0.00019 33.0 7.6 98 83-186 83-194 (202)
40 cd06433 GT_2_WfgS_like WfgS an 79.8 13 0.00029 31.2 8.6 94 83-182 75-183 (202)
41 cd06439 CESA_like_1 CESA_like_ 79.7 3.7 8E-05 36.9 5.3 30 83-112 109-138 (251)
42 COG1216 Predicted glycosyltran 79.6 9.1 0.0002 36.3 8.2 130 46-188 55-215 (305)
43 cd04196 GT_2_like_d Subfamily 79.3 9.1 0.0002 32.9 7.5 93 81-179 77-190 (214)
44 TIGR03472 HpnI hopanoid biosyn 79.2 5.1 0.00011 39.2 6.5 98 82-186 125-246 (373)
45 cd04187 DPM1_like_bac Bacteria 76.7 8.6 0.00019 32.7 6.5 70 83-152 80-164 (181)
46 cd06442 DPM1_like DPM1_like re 75.5 16 0.00034 31.9 8.0 36 84-119 79-115 (224)
47 COG1215 Glycosyltransferases, 74.4 11 0.00024 36.9 7.4 96 82-184 136-256 (439)
48 cd02510 pp-GalNAc-T pp-GalNAc- 73.6 9 0.0002 35.9 6.3 99 83-185 83-217 (299)
49 cd06913 beta3GnTL1_like Beta 1 72.9 6.7 0.00014 34.6 5.0 96 82-182 83-198 (219)
50 cd04179 DPM_DPG-synthase_like 72.7 9.4 0.0002 32.2 5.7 37 84-120 80-117 (185)
51 cd04191 Glucan_BSP_ModH Glucan 71.6 14 0.0003 34.5 7.0 104 82-186 94-224 (254)
52 PF02485 Branch: Core-2/I-Bran 71.1 11 0.00024 34.3 6.2 145 6-152 12-172 (244)
53 PLN02726 dolichyl-phosphate be 68.8 24 0.00052 31.8 7.8 98 83-186 93-211 (243)
54 PRK14716 bacteriophage N4 adso 68.0 39 0.00085 35.1 9.9 100 82-184 157-280 (504)
55 cd00761 Glyco_tranf_GTA_type G 66.6 10 0.00022 29.7 4.3 73 83-178 77-150 (156)
56 PF00535 Glycos_transf_2: Glyc 64.1 9.2 0.0002 30.9 3.7 37 83-119 78-115 (169)
57 PTZ00260 dolichyl-phosphate be 59.2 46 0.001 32.2 8.2 98 83-186 162-285 (333)
58 PRK10714 undecaprenyl phosphat 55.8 26 0.00056 33.8 5.8 70 83-152 90-174 (325)
59 TIGR03030 CelA cellulose synth 52.9 45 0.00097 36.0 7.5 94 82-182 227-347 (713)
60 PF05637 Glyco_transf_34: gala 52.2 18 0.00038 33.7 3.8 35 71-106 65-101 (239)
61 PRK11234 nfrB bacteriophage N4 49.9 80 0.0017 34.4 8.8 102 83-186 155-279 (727)
62 cd04190 Chitin_synth_C C-termi 48.3 41 0.00089 30.5 5.6 46 62-109 53-99 (244)
63 PF13704 Glyco_tranf_2_4: Glyc 47.3 28 0.00062 26.7 3.8 25 81-105 69-97 (97)
64 KOG2246 Galactosyltransferases 46.2 14 0.00029 36.8 2.2 58 6-71 104-162 (364)
65 cd06423 CESA_like CESA_like is 42.1 37 0.00081 27.1 3.9 26 83-108 78-103 (180)
66 PRK05454 glucosyltransferase M 39.9 82 0.0018 34.1 7.0 111 76-186 213-349 (691)
67 PF10111 Glyco_tranf_2_2: Glyc 39.6 1.2E+02 0.0026 28.4 7.4 97 83-183 88-212 (281)
68 PLN03181 glycosyltransferase; 31.0 58 0.0013 33.2 3.8 39 71-110 187-225 (453)
69 PF03142 Chitin_synth_2: Chiti 30.4 1.3E+02 0.0028 31.6 6.4 40 81-121 199-238 (527)
70 PHA02688 ORF059 IMV protein VP 29.5 1.2E+02 0.0027 29.6 5.7 75 81-155 114-202 (323)
71 COG3306 Glycosyltransferase in 26.7 3.3E+02 0.0072 25.6 8.0 21 136-156 156-176 (255)
72 COG3506 Uncharacterized conser 22.5 64 0.0014 28.8 2.1 37 239-275 78-118 (189)
73 PRK15489 nfrB bacteriophage N4 22.4 6.1E+02 0.013 27.7 9.9 97 84-183 164-284 (703)
74 PF09258 Glyco_transf_64: Glyc 22.2 2.3E+02 0.005 26.4 6.0 97 83-182 75-187 (247)
75 PRK11498 bcsA cellulose syntha 22.2 1.7E+02 0.0036 32.6 5.7 92 82-182 338-458 (852)
76 cd02514 GT13_GLCNAC-TI GT13_GL 21.9 2.1E+02 0.0045 28.2 5.8 76 72-150 88-174 (334)
77 KOG1282 Serine carboxypeptidas 20.7 9.3E+02 0.02 24.8 12.0 91 66-158 148-248 (454)
78 KOG4748 Subunit of Golgi manno 20.3 1.1E+02 0.0024 30.5 3.6 30 67-97 160-189 (364)
No 1
>PLN03153 hypothetical protein; Provisional
Probab=100.00 E-value=2.3e-95 Score=721.07 Aligned_cols=317 Identities=44% Similarity=0.891 Sum_probs=305.8
Q ss_pred CcccchhhhhhhhhhccCCCCcccEEEeccccccccccCCCCCCCCCeEecCCCCCccccc---CchhHHHHHHHHHHHH
Q 048713 1 GSAATWHDRTRYINLWWKPNRTRGFVWLDEEPREKNRASSTIANTIPYRVSDPGWTRFRYS---SSRSAVRIARIIWDSF 77 (324)
Q Consensus 1 ~~~~~w~~r~~~~~~ww~~~~~r~~v~~~~~~~~~~~~~~~~~~~lP~~~~s~~~~~f~~~---g~~~a~r~~~iv~~~~ 77 (324)
||+++|++||+|||+||+|+.||||||||+++.. .+|+.++||++||.|||+|+|+ ||++++||++|+.+++
T Consensus 130 ~s~~~w~~R~~yik~wW~p~~~rg~v~ld~~~~~-----~~~~~~~P~i~is~d~s~f~y~~~~Gh~sa~rI~rmv~et~ 204 (537)
T PLN03153 130 GSSQLWKRRKELVRLWWRPNQMRGHVWLEEQVSP-----EEGDDSLPPIMVSEDTSRFRYTNPTGHPSGLRISRIVLESF 204 (537)
T ss_pred EchhhhhhhhhhhhhhcCcccceeEEEecccCCC-----CCCcCCCCCEEeCCCcccccccCCCCcHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999998753 3699999999999999999988 9999999999999999
Q ss_pred HhcCCCccEEEEEcCCeeeeHHHHHHHhhcCCCCCCEEEeeccccccccccccccccccceeEEEcHHHHHHHHHHhhhh
Q 048713 78 KLNLPNVRWFVMGDDDTVFFTDNLLSVLTRYDHNQMWYIGCNSESVEQNVMHAYDMAFGGGGFAVSYPLAEKLVNALDGC 157 (324)
Q Consensus 78 ~~~~p~~~Wfv~~DDDTf~~~~nL~~~Ls~yD~~~p~yIG~~se~~~~~~~~~~~fa~GGaGivLSr~ll~~L~~~~~~C 157 (324)
+.+.|++||||++||||||+++||+++|++||+++++|||.++|...++..+++.||+|||||+||++||++|.+.+++|
T Consensus 205 ~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~~~qn~~f~~~fA~GGAG~~LSrPLae~L~~~~d~C 284 (537)
T PLN03153 205 RLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESHSANSYFSHNMAFGGGGIAISYPLAEALSRILDDC 284 (537)
T ss_pred HhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecccccccccccccccccccCCceEEEcHHHHHHHHHHhhhh
Confidence 98899999999999999999999999999999999999999999998888888889999999999999999999999999
Q ss_pred hhhhccCCcchHHHHHHHHHhCCceecCCCCcccccCCCCCCCCCCCCCCCeeeecccCcCCCCCCCcchHHHHHHHHHH
Q 048713 158 LERYYYFYGSDQRIWACISEIGVSLTPERGFHQLDIRGDPYGLLGAHPIAPLVTLHHIDYLNSLFPNRTQLDSLETLIHA 237 (324)
Q Consensus 158 ~~~~~~~~~~D~~Lg~Cl~~~GV~lt~~~gfhQ~d~~gd~~g~~~~~~~~P~iSlHH~~~~~~~fp~~~~~~~~~~l~~a 237 (324)
..+|+..++||++|++||+++||+||+++||||+|+.||+.|++++|+++|+|||||++.++|+||+|++.++++++.+|
T Consensus 285 ~~rY~~~~~gD~rL~~CL~elGV~LT~~~gfhQ~D~~Gd~~G~les~p~~P~vSlHH~~~~~p~fP~~~~~~~~~~l~~a 364 (537)
T PLN03153 285 LDRYPKLYGSDDRLHACITELGVPLSREPGFHQWDIRGNAHGLLSSHPIAPFVSIHHVEAVDPFYPGLSSLDSLKLFTRA 364 (537)
T ss_pred hhhcccCCCcHHHHHHHHHHcCCCceecCCccccccCCCcchHhhcCCCCCceeeeeccccccccCCcchHHHHHHHHHH
Confidence 99887778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCceeeeeeecCCcceEEEeeeeEEEEEeCCCCCcccccchhhhhhhccCCCC-CCccccCCCCCCCCCCCCeeE
Q 048713 238 YRIDPNRILQQSLCYDTKREWSISISWGYTIQIYPLFLSANNLAMPLQTFKTWRSWRD-GPFIFNTRSVSPDPCDHPVVY 316 (324)
Q Consensus 238 ~~~~~~~~~q~~~~~d~~~~w~~~~s~Gysv~~y~~~~~~~~l~~~~~tf~~w~~~~~-~~~~f~~r~~~~~~~~~~~~~ 316 (324)
+++|++++|||+||||..++|+|+|||||||++|++++.+.||+++|+||.+|++..+ .+|+|||||+++++|++|.+|
T Consensus 365 ~~~d~~~~lq~siCyd~~~~w~fsvSwGysV~~y~~~~~~~dl~~~e~Tf~~w~~~~~~~~f~fntr~~~r~~c~~p~~f 444 (537)
T PLN03153 365 MKVDPRSFLQRSICYDHTHHLTFSISLGYVVQVFPSIVLPRDLERSELTYSAWNKISHRNEFDLDTRDPIKSVCKKPILF 444 (537)
T ss_pred hhcCchhHHHHHHhhhcccceeEEEeccEEEEEecCCCCchhhhhhHhhhhhhcccCCCCCccccCCCCCCCcccCceEE
Confidence 9999999999999999999999999999999999999999999999999999988876 689999999999999999999
Q ss_pred Eecccc
Q 048713 317 FLDSVE 322 (324)
Q Consensus 317 ~~~~~~ 322 (324)
||++|+
T Consensus 445 ~l~~~~ 450 (537)
T PLN03153 445 FLKDVG 450 (537)
T ss_pred Eeeecc
Confidence 999885
No 2
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=100.00 E-value=5.3e-66 Score=473.19 Aligned_cols=199 Identities=58% Similarity=1.105 Sum_probs=194.6
Q ss_pred ccccccccccccceeEEEcHHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHHhCCceecCCCCcccccCCCCCCCCCCC
Q 048713 125 QNVMHAYDMAFGGGGFAVSYPLAEKLVNALDGCLERYYYFYGSDQRIWACISEIGVSLTPERGFHQLDIRGDPYGLLGAH 204 (324)
Q Consensus 125 ~~~~~~~~fa~GGaGivLSr~ll~~L~~~~~~C~~~~~~~~~~D~~Lg~Cl~~~GV~lt~~~gfhQ~d~~gd~~g~~~~~ 204 (324)
||..++|+||||||||+||+||+++|.+++|.|+++|+..+++|.+|..||+++||+||.++||||+|++||+.|++++|
T Consensus 1 Qn~~fs~~MAfGGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~lgv~LT~e~g~hQ~Di~Gd~~G~~~a~ 80 (255)
T PF04646_consen 1 QNVMFSYNMAFGGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAELGVPLTKEPGFHQMDIRGDPSGFLEAH 80 (255)
T ss_pred CCceeeccccccCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCceecCCceeEeeccCcceeeecC
Confidence 57789999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred CCCCeeeecccCcCCCCCCCcchHHHHHHHHHHhhcCCCCceeeeeeecCCcceEEEeeeeEEEEEeCCCCCcccccchh
Q 048713 205 PIAPLVTLHHIDYLNSLFPNRTQLDSLETLIHAYRIDPNRILQQSLCYDTKREWSISISWGYTIQIYPLFLSANNLAMPL 284 (324)
Q Consensus 205 ~~~P~iSlHH~~~~~~~fp~~~~~~~~~~l~~a~~~~~~~~~q~~~~~d~~~~w~~~~s~Gysv~~y~~~~~~~~l~~~~ 284 (324)
+..|++||||++.++||||+|+++++|++|++|+++|++++|||+||||+.++|+||||||||||+|++.++++||++++
T Consensus 81 ~~~pl~SlHH~~~~~PifP~~~~~~al~~L~~a~~~d~~~~lqqsicyd~~~~wsvsVSwGYsVqvy~~~l~~~dLe~~~ 160 (255)
T PF04646_consen 81 PLAPLVSLHHWDSVDPIFPNMSRLQALRHLLKAAKVDPARILQQSICYDRRRNWSVSVSWGYSVQVYRGILTPRDLETPE 160 (255)
T ss_pred CCCceeeeeehhhccccCCCCCHHHHHHHHHHHHhhChHhhhheeeeccCceEEEEEEEccEEEEEECCCCChHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCC-CCccccCCCCCCCCCCCCeeEEeccccc
Q 048713 285 QTFKTWRSWRD-GPFIFNTRSVSPDPCDHPVVYFLDSVEN 323 (324)
Q Consensus 285 ~tf~~w~~~~~-~~~~f~~r~~~~~~~~~~~~~~~~~~~~ 323 (324)
+||.+|++.++ ++|+|||||++++||++|++|||++|++
T Consensus 161 rTF~~W~~~~~~~~f~FnTRp~~~dpC~rP~vffL~~v~~ 200 (255)
T PF04646_consen 161 RTFRTWYRRSDRTPFAFNTRPVPRDPCQRPTVFFLSSVRS 200 (255)
T ss_pred HHhhcccCcCcCCceeccCCCCcCCCCCCCeEEEEeeeee
Confidence 99999999987 9999999999999999999999999964
No 3
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.6e-48 Score=375.02 Aligned_cols=266 Identities=36% Similarity=0.568 Sum_probs=238.5
Q ss_pred CcccchhhhhhhhhhccCCCCcccEEEeccccccccccCCCCC------CCCCeEecCCCCCccc---cc---CchhHHH
Q 048713 1 GSAATWHDRTRYINLWWKPNRTRGFVWLDEEPREKNRASSTIA------NTIPYRVSDPGWTRFR---YS---SSRSAVR 68 (324)
Q Consensus 1 ~~~~~w~~r~~~~~~ww~~~~~r~~v~~~~~~~~~~~~~~~~~------~~lP~~~~s~~~~~f~---~~---g~~~a~r 68 (324)
+|+.+|..|+.||..||.|+.||+.+|++.. .+||. ..+|++ +|.++++|+ ++ |.+.++|
T Consensus 81 ~s~~~~l~r~~~v~cwv~t~~~~~~~~~~~v-------~~TW~~rc~~~~f~s~~-~s~~~~~f~~v~~~~~~g~~~~~~ 152 (364)
T KOG2246|consen 81 SSIALWLSRSGRVLCWVLTSPMRHVTRADAV-------KETWLKRCDKGIFFSPT-LSKDDSRFPTVYYNLPDGYRSLWR 152 (364)
T ss_pred ccchhccCCCceEEEEEEecCcCceeehhhh-------hcccccccCcceecCcc-CCCCCCcCceeeccCCcchHHHHH
Confidence 4789999999999999999999999999996 46774 356888 999999998 55 7888999
Q ss_pred HHHHHHHHHH-hcCCCccEEEEEcCCeeeeHHHHHHHhhcCCCCCCEEEeeccccccccccccccccccceeEEEcHHHH
Q 048713 69 IARIIWDSFK-LNLPNVRWFVMGDDDTVFFTDNLLSVLTRYDHNQMWYIGCNSESVEQNVMHAYDMAFGGGGFAVSYPLA 147 (324)
Q Consensus 69 ~~~iv~~~~~-~~~p~~~Wfv~~DDDTf~~~~nL~~~Ls~yD~~~p~yIG~~se~~~~~~~~~~~fa~GGaGivLSr~ll 147 (324)
+.+++-+.+. +..+++|||+++||||||+++||+++|++|||++|+|||.+++.+.++. +.+||||+++|++++
T Consensus 153 ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~~~~~~~-----y~~g~ag~~ls~aa~ 227 (364)
T KOG2246|consen 153 KTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSKSYFQNG-----YSSGGAGYVLSFAAL 227 (364)
T ss_pred HHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEeccccccccccc-----cccCCCCcceeHHHH
Confidence 9888888775 6789999999999999999999999999999999999999999887765 345666666666666
Q ss_pred HHHHH----HhhhhhhhhccCCcchHHHHHHHHHhCCceecCCCCcccccCCCCCCCCCCCCCCCeeeecccCcCCCCCC
Q 048713 148 EKLVN----ALDGCLERYYYFYGSDQRIWACISEIGVSLTPERGFHQLDIRGDPYGLLGAHPIAPLVTLHHIDYLNSLFP 223 (324)
Q Consensus 148 ~~L~~----~~~~C~~~~~~~~~~D~~Lg~Cl~~~GV~lt~~~gfhQ~d~~gd~~g~~~~~~~~P~iSlHH~~~~~~~fp 223 (324)
+++++ ..+.|+.++.. +++|..|++||+++||+++++ ||.|..+...|+..++++.|++++||+.-+ +||
T Consensus 228 ~~la~~l~~~~~~C~~~~~~-~~eD~~i~~Cl~~~GV~~~d~---~d~dg~~rf~~~~p~~~~~p~~s~~~~~~~--~fp 301 (364)
T KOG2246|consen 228 RRLAERLLNNEDKCPQRYPS-YGEDRRIGRCLAEVGVPATDE---RDEDGRGRFLPLLPAHPIAPLVSLHHLWLV--YFP 301 (364)
T ss_pred HHHHHHHhcchhhcccccCC-chhHHHHHHHHHHhCCCccCc---hhhhcccccCCCChhhccCCccccccceee--ecC
Confidence 66554 56789999865 789999999999999999998 999999999999999999999999999988 899
Q ss_pred CcchHHHHHHHHHHhhcCCCCceeeeeeecCCcceEEEeeeeEEEEEeCCCCCcccccchhhhhhhcc
Q 048713 224 NRTQLDSLETLIHAYRIDPNRILQQSLCYDTKREWSISISWGYTIQIYPLFLSANNLAMPLQTFKTWR 291 (324)
Q Consensus 224 ~~~~~~~~~~l~~a~~~~~~~~~q~~~~~d~~~~w~~~~s~Gysv~~y~~~~~~~~l~~~~~tf~~w~ 291 (324)
+++...++.+++.+.+.++. .+|+.+|||..+.|+++++|||.+++++.... ++.+||.+|+
T Consensus 302 ~~~~~~~~s~~~vsfh~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~t~~~~~ 363 (364)
T KOG2246|consen 302 NQNGSGCCSDLAVSFHYLSP-IEMQSFCYDIYRLRTFGVSWGYTVQIIRPNLS-----RPSRTFSSWN 363 (364)
T ss_pred CCchhhHHHHhhHhhccCCH-HHHHHHhhhhhheeeccccccccccccccccc-----ccccccCCCC
Confidence 99999999999999999999 99999999999999999999999999999887 7889999997
No 4
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.95 E-value=4.7e-28 Score=226.06 Aligned_cols=194 Identities=22% Similarity=0.293 Sum_probs=105.5
Q ss_pred ccchhhhhhhhhhccCCCCcccEEE--eccccccccccCCCCCCCCCeE----ecCCCCCcccccCch-hHHHHHHHHHH
Q 048713 3 AATWHDRTRYINLWWKPNRTRGFVW--LDEEPREKNRASSTIANTIPYR----VSDPGWTRFRYSSSR-SAVRIARIIWD 75 (324)
Q Consensus 3 ~~~w~~r~~~~~~ww~~~~~r~~v~--~~~~~~~~~~~~~~~~~~lP~~----~~s~~~~~f~~~g~~-~a~r~~~iv~~ 75 (324)
.+..+.|...|+.+|-+. .+..+| .|.... .+|+. .+.++.++ +++ .++.+...+..
T Consensus 16 ~k~h~tR~~~I~~TW~~~-~~~~~~ifsd~~d~-----------~l~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~y 79 (252)
T PF02434_consen 16 KKFHKTRAPAIKQTWAKR-CNKQTFIFSDAEDP-----------SLPTVTGVHLVNPNCDA----GHCRKTLSCKMAYEY 79 (252)
T ss_dssp GGGTTTTHHHHHHTGGGG-SGGGEEEEESS--H-----------HHHHHHGGGEEE-----------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh-cCCceEEecCcccc-----------ccccccccccccCCCcc----hhhHHHHHHHHHHHH
Confidence 456788999999999885 444444 555422 24444 12333333 222 22222222111
Q ss_pred HHHhcCCCccEEEEEcCCeeeeHHHHHHHhhcCCCCCCEEEeeccccccccc----------cccccccccceeEEEcHH
Q 048713 76 SFKLNLPNVRWFVMGDDDTVFFTDNLLSVLTRYDHNQMWYIGCNSESVEQNV----------MHAYDMAFGGGGFAVSYP 145 (324)
Q Consensus 76 ~~~~~~p~~~Wfv~~DDDTf~~~~nL~~~Ls~yD~~~p~yIG~~se~~~~~~----------~~~~~fa~GGaGivLSr~ 145 (324)
.+. ..+++|||+++|||||++++||+++|++||+++|+|||.++....... ..++.||+|||||+|||+
T Consensus 80 ~~~-~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~~~~~~~~~~~~~~~~f~~GGaG~vlSr~ 158 (252)
T PF02434_consen 80 DHF-LNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEIIHRFNPNKSKDSGFWFATGGAGYVLSRA 158 (252)
T ss_dssp HHH-HHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE----------------------EE-GGG-EEEEHH
T ss_pred Hhh-hcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccceeeccccccccCcCceEeeCCCeeHHHhHH
Confidence 111 146889999999999999999999999999999999999975442111 134568999999999999
Q ss_pred HHHHHHHHhhhh--hhhhc-cCCcchHHHHHHHHH-hCCceecCCCCcccccC--CCCCCCCCCCCCCCeeeecccC
Q 048713 146 LAEKLVNALDGC--LERYY-YFYGSDQRIWACISE-IGVSLTPERGFHQLDIR--GDPYGLLGAHPIAPLVTLHHID 216 (324)
Q Consensus 146 ll~~L~~~~~~C--~~~~~-~~~~~D~~Lg~Cl~~-~GV~lt~~~gfhQ~d~~--gd~~g~~~~~~~~P~iSlHH~~ 216 (324)
||++|.+....| ..... ...++|+.||.||+. +||++|+++.|||.-.. ......+.. +..||+|+..
T Consensus 159 ~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs~~~~l~~~~~~~l~~---q~~~s~~~~~ 232 (252)
T PF02434_consen 159 LLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHSHLENLQDYNPETLHR---QVPISYHKFE 232 (252)
T ss_dssp HHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---SSS-GGG--TTTGGG----SEEE-EEET
T ss_pred HHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcccCcccccCCHHHhcc---CCCeecCCCc
Confidence 999998876544 43322 135799999999998 99999999999996332 112233333 3459999986
No 5
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=1.8e-12 Score=128.96 Aligned_cols=147 Identities=23% Similarity=0.339 Sum_probs=107.0
Q ss_pred chhHHHHHHHHHHHHHhcCCCccEEEEEcCCeeeeHHHHHHHhhcCCCCCCEEEeeccccccccccccccccccceeEEE
Q 048713 63 SRSAVRIARIIWDSFKLNLPNVRWFVMGDDDTVFFTDNLLSVLTRYDHNQMWYIGCNSESVEQNVMHAYDMAFGGGGFAV 142 (324)
Q Consensus 63 ~~~a~r~~~iv~~~~~~~~p~~~Wfv~~DDDTf~~~~nL~~~Ls~yD~~~p~yIG~~se~~~~~~~~~~~fa~GGaGivL 142 (324)
.+.+.+....+..++.+...++|||+++-||||++...|++++.+.+.++++|+|.-.+.. .+ -|.+|.|+.|
T Consensus 77 ~r~~~~~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~~~g-----s~--rC~l~~G~LL 149 (681)
T KOG3708|consen 77 LRGQKTHSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEAEDG-----SG--RCRLDTGMLL 149 (681)
T ss_pred cCccccHHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhhhCc-----cC--ccccccceee
Confidence 3555566666666666668899999999999999999999999999999999999644321 12 3999999999
Q ss_pred cHHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHH-hCCceecC-CCCccc----ccCCCCCCC---CCCCCCCCeeeec
Q 048713 143 SYPLAEKLVNALDGCLERYYYFYGSDQRIWACISE-IGVSLTPE-RGFHQL----DIRGDPYGL---LGAHPIAPLVTLH 213 (324)
Q Consensus 143 Sr~ll~~L~~~~~~C~~~~~~~~~~D~~Lg~Cl~~-~GV~lt~~-~gfhQ~----d~~gd~~g~---~~~~~~~P~iSlH 213 (324)
|++++++|-++.+.|.....+ .-.|..||+||.. +||.|+.. .|..|+ |.+|-...+ ..+.-++..+++|
T Consensus 150 S~s~l~~lrnnle~C~~~~ls-ad~d~~lgrCi~~At~v~C~~~hQGvrq~s~~~dspgr~~~~~e~~~s~aFr~A~tv~ 228 (681)
T KOG3708|consen 150 SQSLLHALRNNLEGCRNDILS-ADPDEWLGRCIQDATGVGCKPLHQGVRQYSEREDSPGRHDSIPEWEGSPAFRSALTVH 228 (681)
T ss_pred cHHHHHHHHhhHHHhhccccc-CCcHHHHHHHHHHhhcCCccchhhhHHhhhHhhcCCCccccchhhcCChHHhhhhccC
Confidence 999999999999999876432 2368999999996 79998753 344332 222311111 1122245567777
Q ss_pred ccCc
Q 048713 214 HIDY 217 (324)
Q Consensus 214 H~~~ 217 (324)
.+.+
T Consensus 229 pv~~ 232 (681)
T KOG3708|consen 229 PVLS 232 (681)
T ss_pred ccCC
Confidence 7765
No 6
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.20 E-value=2.1e-10 Score=112.19 Aligned_cols=144 Identities=20% Similarity=0.311 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHHHHhcCCCccEEEEEcCCeeeeHHHHHHHhhcC-CCCCCEEEeecccccc--cc----------cccc-
Q 048713 65 SAVRIARIIWDSFKLNLPNVRWFVMGDDDTVFFTDNLLSVLTRY-DHNQMWYIGCNSESVE--QN----------VMHA- 130 (324)
Q Consensus 65 ~a~r~~~iv~~~~~~~~p~~~Wfv~~DDDTf~~~~nL~~~Ls~y-D~~~p~yIG~~se~~~--~~----------~~~~- 130 (324)
-.+|.+.++...-. ++|+++.++++|||+||++++|++.|.+. ++++.+|+|....... .+ .+..
T Consensus 170 ltlKtl~~l~w~~~-~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~~~y~~~ 248 (349)
T KOG2287|consen 170 LTLKTLAILLWGVS-KCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPESEYPCS 248 (349)
T ss_pred hHHHHHHHHHHHHh-cCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCHHHCCCC
Confidence 35677777776664 49999999999999999999999999999 9999999998754311 00 0111
Q ss_pred ccccc-cceeEEEcHHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHHh-CCceecCCCCcccccCCCCCCCCCCCCCCC
Q 048713 131 YDMAF-GGGGFAVSYPLAEKLVNALDGCLERYYYFYGSDQRIWACISEI-GVSLTPERGFHQLDIRGDPYGLLGAHPIAP 208 (324)
Q Consensus 131 ~~fa~-GGaGivLSr~ll~~L~~~~~~C~~~~~~~~~~D~~Lg~Cl~~~-GV~lt~~~gfhQ~d~~gd~~g~~~~~~~~P 208 (324)
.+.+| +|+||+||+.++++|.+.... ... ...+|+.+|.||++. |+.....+++.... .-+..+. .+-
T Consensus 249 ~YP~Y~sG~gYvis~~~a~~l~~~s~~-~~~---~~iEDV~~g~~l~~~~gi~~~~~~~~~~~~-----~~~~~~~-~~~ 318 (349)
T KOG2287|consen 249 VYPPYASGPGYVISGDAARRLLKASKH-LKF---FPIEDVFVGGCLAEDLGIKPVNHPGFFEIP-----LSFDPCC-YRD 318 (349)
T ss_pred CCCCcCCCceeEecHHHHHHHHHHhcC-CCc---cchHHHHHHHHHHHhcCCCcccCccccccc-----ccCCCCc-ccc
Confidence 11334 899999999999999984222 211 235999999999986 98887776633221 1122221 356
Q ss_pred eeeecccCcCC
Q 048713 209 LVTLHHIDYLN 219 (324)
Q Consensus 209 ~iSlHH~~~~~ 219 (324)
+++.|..++.+
T Consensus 319 ~~~~H~~~p~e 329 (349)
T KOG2287|consen 319 LLAVHRLSPNE 329 (349)
T ss_pred eEEEecCCHHH
Confidence 89999987643
No 7
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=99.15 E-value=2.5e-10 Score=102.08 Aligned_cols=116 Identities=19% Similarity=0.230 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHHHHhcCCCccEEEEEcCCeeeeHHHHHHHhhcC--CCCCCEEEeeccccccc----cc--------cc-
Q 048713 65 SAVRIARIIWDSFKLNLPNVRWFVMGDDDTVFFTDNLLSVLTRY--DHNQMWYIGCNSESVEQ----NV--------MH- 129 (324)
Q Consensus 65 ~a~r~~~iv~~~~~~~~p~~~Wfv~~DDDTf~~~~nL~~~Ls~y--D~~~p~yIG~~se~~~~----~~--------~~- 129 (324)
..+|++.+++.+.++ ++++++++++|||+|+++++|...|.+. +..+..+.|........ .. ..
T Consensus 63 lt~K~~~~~~w~~~~-c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y~~ 141 (195)
T PF01762_consen 63 LTLKTLAGLKWASKH-CPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEYPD 141 (195)
T ss_pred hhHHHHHHHHHHHhh-CCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeeeccc
Confidence 356888888888865 9999999999999999999999999887 77777887876433210 00 00
Q ss_pred c-c-cccccceeEEEcHHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHHhCCceecCC
Q 048713 130 A-Y-DMAFGGGGFAVSYPLAEKLVNALDGCLERYYYFYGSDQRIWACISEIGVSLTPER 186 (324)
Q Consensus 130 ~-~-~fa~GGaGivLSr~ll~~L~~~~~~C~~~~~~~~~~D~~Lg~Cl~~~GV~lt~~~ 186 (324)
. | .|| .|+||+||+.+++.|...... . +....+|+.+|.|+..+||+.++.|
T Consensus 142 ~~yP~y~-~G~~yvls~~~v~~i~~~~~~-~---~~~~~eDv~iGi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 142 DYYPPYC-SGGGYVLSSDVVKRIYKASSH-T---PFFPLEDVFIGILAEKLGIKPIHDP 195 (195)
T ss_pred ccCCCcC-CCCeEEecHHHHHHHHHHhhc-C---CCCCchHHHHHHHHHHCCCCccCCC
Confidence 1 1 133 688999999999999976333 1 2234699999999999999987643
No 8
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=99.06 E-value=1e-09 Score=108.30 Aligned_cols=119 Identities=18% Similarity=0.186 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEEEcCCeeeeHHHHHHHhhcCCCCCCEEEeeccccccc---c------ccc------c
Q 048713 66 AVRIARIIWDSFKLNLPNVRWFVMGDDDTVFFTDNLLSVLTRYDHNQMWYIGCNSESVEQ---N------VMH------A 130 (324)
Q Consensus 66 a~r~~~iv~~~~~~~~p~~~Wfv~~DDDTf~~~~nL~~~Ls~yD~~~p~yIG~~se~~~~---~------~~~------~ 130 (324)
.+|.+.+++.+++ ..++++|+++|||+|+++++|.+.|.+......+|+|........ . ..+ .
T Consensus 221 T~KTl~~f~wA~~--~~dAkF~mK~DDDvfVnv~~L~~~L~~~~~~~rlYiG~m~~gPvr~~~~~ky~epe~w~~~~~~~ 298 (408)
T PLN03193 221 SAKTKTYFATAVA--MWDADFYVKVDDDVHVNIATLGETLVRHRKKPRVYIGCMKSGPVLSQKGVRYHEPEYWKFGENGN 298 (408)
T ss_pred hHHHHHHHHHHHH--cCCCeEEEEcCCCceEcHHHHHHHHHhcCCCCCEEEEecccCccccCCCCcCcCcccccccCccc
Confidence 4577777777775 468999999999999999999999988766667999997432110 0 000 1
Q ss_pred ccccc-cceeEEEcHHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHHhCCceecCCCCcc
Q 048713 131 YDMAF-GGGGFAVSYPLAEKLVNALDGCLERYYYFYGSDQRIWACISEIGVSLTPERGFHQ 190 (324)
Q Consensus 131 ~~fa~-GGaGivLSr~ll~~L~~~~~~C~~~~~~~~~~D~~Lg~Cl~~~GV~lt~~~gfhQ 190 (324)
.++.| .|+|||||+.+++.|+..... +..| ..+|+.||.||..++|...+.+.|.-
T Consensus 299 ~YPpyAsG~gYVlS~DLa~~I~~n~~~-L~~y---~~EDV~vG~Wl~~L~V~~vdd~~fcc 355 (408)
T PLN03193 299 KYFRHATGQLYAISKDLASYISINQHV-LHKY---ANEDVSLGSWFIGLDVEHIDDRRLCC 355 (408)
T ss_pred cCCCCCCcceEEehHHHHHHHHhChhh-hccc---CcchhhhhhHhccCCceeeecccccC
Confidence 22444 889999999999999865443 3333 35999999999888888877777753
No 9
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=99.05 E-value=2.3e-09 Score=111.21 Aligned_cols=113 Identities=18% Similarity=0.213 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEEEcCCeeeeHHHHHHHhhcCCCCCCEEEeeccccccc--c----------cc-cccc
Q 048713 66 AVRIARIIWDSFKLNLPNVRWFVMGDDDTVFFTDNLLSVLTRYDHNQMWYIGCNSESVEQ--N----------VM-HAYD 132 (324)
Q Consensus 66 a~r~~~iv~~~~~~~~p~~~Wfv~~DDDTf~~~~nL~~~Ls~yD~~~p~yIG~~se~~~~--~----------~~-~~~~ 132 (324)
.+|++.++.-+. .++++++++++|||+|+++++|++.|.+.+..+.+|+|........ + .+ ...+
T Consensus 460 TlKtl~~~~wa~--~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~eyp~~~Y 537 (636)
T PLN03133 460 TWKTLAICIFGT--EVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPEEWPEETY 537 (636)
T ss_pred HHHHHHHHHHHH--hCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHHHCCCCCC
Confidence 456655554443 4899999999999999999999999998888888999977432110 0 00 1122
Q ss_pred ccc-cceeEEEcHHHHHHHHHHhhh-hhhhhccCCcchHHHHHHHHH---hCCcee
Q 048713 133 MAF-GGGGFAVSYPLAEKLVNALDG-CLERYYYFYGSDQRIWACISE---IGVSLT 183 (324)
Q Consensus 133 fa~-GGaGivLSr~ll~~L~~~~~~-C~~~~~~~~~~D~~Lg~Cl~~---~GV~lt 183 (324)
.+| +|+||+||+.+++.|...... -...+ .-+|+.+|.|+++ +|+...
T Consensus 538 PpYasG~gYVlS~Dla~~L~~~s~s~~l~~f---~lEDVyvGi~l~~l~k~gl~v~ 590 (636)
T PLN03133 538 PPWAHGPGYVVSRDIAKEVYKRHKEGRLKMF---KLEDVAMGIWIAEMKKEGLEVK 590 (636)
T ss_pred CCCCCcCEEEEcHHHHHHHHHhhhhcccCcC---ChhhHhHHHHHHHhcccCCCce
Confidence 344 899999999999999876432 23322 3599999999985 455543
No 10
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=98.83 E-value=5.8e-08 Score=94.88 Aligned_cols=147 Identities=16% Similarity=0.096 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEEEcCCeeeeHHHHHHHhhcCCCCCCEEEeeccccccccccccccccccceeEEEcHH
Q 048713 66 AVRIARIIWDSFKLNLPNVRWFVMGDDDTVFFTDNLLSVLTRYDHNQMWYIGCNSESVEQNVMHAYDMAFGGGGFAVSYP 145 (324)
Q Consensus 66 a~r~~~iv~~~~~~~~p~~~Wfv~~DDDTf~~~~nL~~~Ls~yD~~~p~yIG~~se~~~~~~~~~~~fa~GGaGivLSr~ 145 (324)
.+|.+-.++-+++. +|++++++++|||+|+..++++..|.. .++..+|+|.............-.| -+|.||+||+.
T Consensus 183 T~KT~l~~~wA~~~-cP~a~YImKgDDDvFVrVp~lL~~Lr~-~prr~LY~G~v~~~~~p~Rd~~PpY-~~G~gYvLSrD 259 (382)
T PTZ00210 183 SRKTYLWLRFALHM-FPNVSYIVKGDDDIFIRVPKYLADLRV-MPRHGLYMGRYNYYNRIWRRNQLTY-VNGYCITLSRD 259 (382)
T ss_pred hHHHHHHHHHHHHh-CCCCCeEEEcCCCeEeeHHHHHHHHhh-CCCCceEEEeeCCCCccccCCCCCc-cccceeeccHH
Confidence 46777778888865 899999999999999999999999944 5677899998765432111111123 27899999999
Q ss_pred HHHHHHHHhhhh-h----------hhhc--cCCcchHHHHHHHHH-hC-Cce-ec-CCCCcccccCCCCCCCCCCCCCCC
Q 048713 146 LAEKLVNALDGC-L----------ERYY--YFYGSDQRIWACISE-IG-VSL-TP-ERGFHQLDIRGDPYGLLGAHPIAP 208 (324)
Q Consensus 146 ll~~L~~~~~~C-~----------~~~~--~~~~~D~~Lg~Cl~~-~G-V~l-t~-~~gfhQ~d~~gd~~g~~~~~~~~P 208 (324)
+++.|+...... + ..|. ....||+++|.-|.. ++ -++ .. +..-|-.|.+.. .+..+- ...
T Consensus 260 VA~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~EDiMvG~vLr~~~k~~~l~~V~~~~c~Fhd~~~~-~~~~~v--~~~ 336 (382)
T PTZ00210 260 TAQAIISYKPLERLVNMPFSMWDYFDFLDLGMFYEDVMVGMILREKVVYRNLISVEMGRCHFHNAGKF-GVRKSV--RNM 336 (382)
T ss_pred HHHHHHhhChHhHhhcCCCchHHHHHHHHhhcCchHHHHHHHHHHhcCcCceeeeccccccceecCCC-CCcccc--ccc
Confidence 999999762211 1 1111 123599999999974 32 222 22 222232244321 111111 123
Q ss_pred eeeecccCcC
Q 048713 209 LVTLHHIDYL 218 (324)
Q Consensus 209 ~iSlHH~~~~ 218 (324)
.|-+||++.-
T Consensus 337 sVvvHhike~ 346 (382)
T PTZ00210 337 SVVIHHIQEA 346 (382)
T ss_pred eEEEEecCHH
Confidence 6889999874
No 11
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=98.35 E-value=1.5e-06 Score=80.94 Aligned_cols=109 Identities=21% Similarity=0.256 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHhcCCCccEEEEEcCCeeeeHHHHHHHhhcCCCCCCEEEeeccccc--cc-----------cccccccc
Q 048713 67 VRIARIIWDSFKLNLPNVRWFVMGDDDTVFFTDNLLSVLTRYDHNQMWYIGCNSESV--EQ-----------NVMHAYDM 133 (324)
Q Consensus 67 ~r~~~iv~~~~~~~~p~~~Wfv~~DDDTf~~~~nL~~~Ls~yD~~~p~yIG~~se~~--~~-----------~~~~~~~f 133 (324)
-|....+..++.+ =++++|+++|||+|++...|...|+++-....+|||...... .+ ....|-+|
T Consensus 94 ~Kt~~~f~~A~~~--~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~EpeWkfg~~g~Yf 171 (274)
T KOG2288|consen 94 AKTKAFFSAAVAH--WDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPEWKFGDNGNYF 171 (274)
T ss_pred HHHHHHHHHHHHh--ccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChhhhcCcccccc
Confidence 4566666666654 479999999999999999999999998777889999973211 00 01111135
Q ss_pred cc-cceeEEEcHHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHHhCCc
Q 048713 134 AF-GGGGFAVSYPLAEKLVNALDGCLERYYYFYGSDQRIWACISEIGVS 181 (324)
Q Consensus 134 a~-GGaGivLSr~ll~~L~~~~~~C~~~~~~~~~~D~~Lg~Cl~~~GV~ 181 (324)
.| -|+||+||+.|+.-|+-+.+- +..|. .+|+-||.-+.-+.|.
T Consensus 172 rhA~G~~YvlS~dLa~yi~in~~l-L~~y~---nEDVSlGaW~~gldV~ 216 (274)
T KOG2288|consen 172 RHATGGGYVLSKDLATYISINRQL-LHKYA---NEDVSLGAWMIGLDVE 216 (274)
T ss_pred hhccCceEEeeHHHHHHHHHhHHH-HHhhc---cCCcccceeeeeeeee
Confidence 55 688999999999988765443 55443 4899999776544444
No 12
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.38 E-value=0.09 Score=43.52 Aligned_cols=84 Identities=17% Similarity=0.151 Sum_probs=59.3
Q ss_pred CccEEEEEcCCeeeeHHHHHHHhhcCCCCC-CEEEeeccccccccccccccccccceeEEEcHHHHHHHHHHhhhhhhhh
Q 048713 83 NVRWFVMGDDDTVFFTDNLLSVLTRYDHNQ-MWYIGCNSESVEQNVMHAYDMAFGGGGFAVSYPLAEKLVNALDGCLERY 161 (324)
Q Consensus 83 ~~~Wfv~~DDDTf~~~~nL~~~Ls~yD~~~-p~yIG~~se~~~~~~~~~~~fa~GGaGivLSr~ll~~L~~~~~~C~~~~ 161 (324)
+.+|++++|||..+..+.|.+++..+.... -..+|.. ..|+++++++.+++++... +....
T Consensus 74 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~-~~~~~-- 135 (166)
T cd04186 74 KGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK---------------VSGAFLLVRREVFEEVGGF-DEDFF-- 135 (166)
T ss_pred CCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc---------------CceeeEeeeHHHHHHcCCC-Chhhh--
Confidence 789999999999999888888887643332 2233332 5788999999999987432 22111
Q ss_pred ccCCcchHHHHHHHHHhCCceecCC
Q 048713 162 YYFYGSDQRIWACISEIGVSLTPER 186 (324)
Q Consensus 162 ~~~~~~D~~Lg~Cl~~~GV~lt~~~ 186 (324)
..++|..+...+.+.|.++...|
T Consensus 136 --~~~eD~~~~~~~~~~g~~i~~~~ 158 (166)
T cd04186 136 --LYYEDVDLCLRARLAGYRVLYVP 158 (166)
T ss_pred --ccccHHHHHHHHHHcCCeEEEcc
Confidence 14689999988888887765443
No 13
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=95.32 E-value=0.15 Score=44.95 Aligned_cols=99 Identities=16% Similarity=0.186 Sum_probs=64.1
Q ss_pred CCccEEEEEcCCeeeeHHHHHHHhhcC-CCCCCE----EEeeccccccc-------cc-------cccccccccceeEEE
Q 048713 82 PNVRWFVMGDDDTVFFTDNLLSVLTRY-DHNQMW----YIGCNSESVEQ-------NV-------MHAYDMAFGGGGFAV 142 (324)
Q Consensus 82 p~~~Wfv~~DDDTf~~~~nL~~~Ls~y-D~~~p~----yIG~~se~~~~-------~~-------~~~~~fa~GGaGivL 142 (324)
...+++++.|+|+.+.++-|.++++.+ |++-.+ |.+.+.+.... +. ..+..|+ -|+.+++
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~-~G~~m~~ 108 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARGFWSRLEAAFFNFLPGVLQALGGAPFA-WGGSMAF 108 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcCHHHHHHHHHHhHHHHHHHHhcCCCce-ecceeee
Confidence 679999999999999999999988876 443332 33332221100 00 0122233 4667999
Q ss_pred cHHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHHhCCceecCC
Q 048713 143 SYPLAEKLVNALDGCLERYYYFYGSDQRIWACISEIGVSLTPER 186 (324)
Q Consensus 143 Sr~ll~~L~~~~~~C~~~~~~~~~~D~~Lg~Cl~~~GV~lt~~~ 186 (324)
.+.+++++... +. ... ..++|..|++.+.+.|.++...+
T Consensus 109 rr~~L~~~GG~-~~-l~~---~ladD~~l~~~~~~~G~~v~~~~ 147 (175)
T PF13506_consen 109 RREALEEIGGF-EA-LAD---YLADDYALGRRLRARGYRVVLSP 147 (175)
T ss_pred EHHHHHHcccH-HH-Hhh---hhhHHHHHHHHHHHCCCeEEEcc
Confidence 99999887422 11 221 35799999999999998776544
No 14
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=94.44 E-value=0.13 Score=45.17 Aligned_cols=83 Identities=14% Similarity=0.163 Sum_probs=57.9
Q ss_pred CCccEEEEEcCCeeeeHHHHHHHhhcC-CCCCCEEEeeccccccccccccccccccceeEEEcHHHHHHHHHHhhhhhhh
Q 048713 82 PNVRWFVMGDDDTVFFTDNLLSVLTRY-DHNQMWYIGCNSESVEQNVMHAYDMAFGGGGFAVSYPLAEKLVNALDGCLER 160 (324)
Q Consensus 82 p~~~Wfv~~DDDTf~~~~nL~~~Ls~y-D~~~p~yIG~~se~~~~~~~~~~~fa~GGaGivLSr~ll~~L~~~~~~C~~~ 160 (324)
...+|++++|+|+.+.++.|.++|..+ ++.-. .+|.. ...|+++++.+.+++++..- +.-.
T Consensus 85 a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~-~v~~~--------------~~~g~~~~~r~~~~~~~ggf-~~~~-- 146 (196)
T cd02520 85 ARYDILVISDSDISVPPDYLRRMVAPLMDPGVG-LVTCL--------------CAFGKSMALRREVLDAIGGF-EAFA-- 146 (196)
T ss_pred CCCCEEEEECCCceEChhHHHHHHHHhhCCCCC-eEEee--------------cccCceeeeEHHHHHhccCh-HHHh--
Confidence 458999999999999888888888775 33322 22221 24678999999999987543 2111
Q ss_pred hccCCcchHHHHHHHHHhCCceec
Q 048713 161 YYYFYGSDQRIWACISEIGVSLTP 184 (324)
Q Consensus 161 ~~~~~~~D~~Lg~Cl~~~GV~lt~ 184 (324)
....+|..|+.-+.+.|.++..
T Consensus 147 --~~~~eD~~l~~rl~~~G~~i~~ 168 (196)
T cd02520 147 --DYLAEDYFLGKLIWRLGYRVVL 168 (196)
T ss_pred --HHHHHHHHHHHHHHHcCCeEEE
Confidence 1235899999888888866643
No 15
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=94.13 E-value=0.29 Score=43.41 Aligned_cols=95 Identities=19% Similarity=0.193 Sum_probs=53.0
Q ss_pred CccEEEEEcCCeeeeHHHHHHHhhcC-CCCCCEEEeeccccccc-------c------------cccccc-ccccceeEE
Q 048713 83 NVRWFVMGDDDTVFFTDNLLSVLTRY-DHNQMWYIGCNSESVEQ-------N------------VMHAYD-MAFGGGGFA 141 (324)
Q Consensus 83 ~~~Wfv~~DDDTf~~~~nL~~~Ls~y-D~~~p~yIG~~se~~~~-------~------------~~~~~~-fa~GGaGiv 141 (324)
..+|++++|||+.+.++.|.++++.+ ++.-...-|...-...+ . ...... .+..|++++
T Consensus 86 ~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 165 (228)
T PF13641_consen 86 RGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHLRFRSGRRALGVAFLSGSGML 165 (228)
T ss_dssp --SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETTTS-TT-B----S-B--TEEE
T ss_pred CCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhhhhhhhhcccceeeccCcEEE
Confidence 38899999999999988888888877 55444333332100000 0 000011 223579999
Q ss_pred EcHHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHHhCCceec
Q 048713 142 VSYPLAEKLVNALDGCLERYYYFYGSDQRIWACISEIGVSLTP 184 (324)
Q Consensus 142 LSr~ll~~L~~~~~~C~~~~~~~~~~D~~Lg~Cl~~~GV~lt~ 184 (324)
+.+++++++... +. ...++|..++.-+...|.++..
T Consensus 166 ~rr~~~~~~g~f-d~------~~~~eD~~l~~r~~~~G~~~~~ 201 (228)
T PF13641_consen 166 FRRSALEEVGGF-DP------FILGEDFDLCLRLRAAGWRIVY 201 (228)
T ss_dssp EEHHHHHHH-S---S------SSSSHHHHHHHHHHHTT--EEE
T ss_pred EEHHHHHHhCCC-CC------CCcccHHHHHHHHHHCCCcEEE
Confidence 999999998642 22 1346999999998888877643
No 16
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=93.94 E-value=0.049 Score=56.05 Aligned_cols=65 Identities=29% Similarity=0.446 Sum_probs=43.1
Q ss_pred HhhhhhhhhccCCcchHHHHHHHHH-hCCceecCC-CC--cccccC-CCCCCCCCCCCCCCeeeecccCcC
Q 048713 153 ALDGCLERYYYFYGSDQRIWACISE-IGVSLTPER-GF--HQLDIR-GDPYGLLGAHPIAPLVTLHHIDYL 218 (324)
Q Consensus 153 ~~~~C~~~~~~~~~~D~~Lg~Cl~~-~GV~lt~~~-gf--hQ~d~~-gd~~g~~~~~~~~P~iSlHH~~~~ 218 (324)
+++.|.....+ ..+|+.||+||.+ +||+||++. ++ |..... .+..+..+...+...||+|+++..
T Consensus 1 hl~~C~~~~~s-~~~Dv~lGRCI~~~~gi~Ct~~~q~l~y~~~~~~~~~~~~~~~~~~~~~AiTlHPvk~p 70 (499)
T PF05679_consen 1 HLDWCLKNIYS-NHEDVELGRCIKKFTGISCTWSYQGLFYHNYELNKNDFIGDLKNKEFHNAITLHPVKSP 70 (499)
T ss_pred ChhHHhhhcCC-CCchhHHHHHHHHhcCCCeeecccceEEEeeccCCCcccccccchhhhcceeeccCCCH
Confidence 35789987543 4589999999996 899999874 22 222222 222333444456778999999873
No 17
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=92.08 E-value=0.77 Score=40.83 Aligned_cols=97 Identities=14% Similarity=0.031 Sum_probs=56.4
Q ss_pred CccEEEEEcCCeeeeHHHHHHHh---hcCCCCCCE-EEeeccccc--------ccccc----------ccc--cccccce
Q 048713 83 NVRWFVMGDDDTVFFTDNLLSVL---TRYDHNQMW-YIGCNSESV--------EQNVM----------HAY--DMAFGGG 138 (324)
Q Consensus 83 ~~~Wfv~~DDDTf~~~~nL~~~L---s~yD~~~p~-yIG~~se~~--------~~~~~----------~~~--~fa~GGa 138 (324)
+.+|++++|+|+.+.++.|.+++ ..+...... .+|...... ..... ... .....|+
T Consensus 75 ~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (237)
T cd02526 75 GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQKEGEEGLKEVDFLITS 154 (237)
T ss_pred CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceecccccCCceEeeeeecc
Confidence 78999999999999988888874 333222222 223221100 00000 000 0112367
Q ss_pred eEEEcHHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHHhCCceec
Q 048713 139 GFAVSYPLAEKLVNALDGCLERYYYFYGSDQRIWACISEIGVSLTP 184 (324)
Q Consensus 139 GivLSr~ll~~L~~~~~~C~~~~~~~~~~D~~Lg~Cl~~~GV~lt~ 184 (324)
|.++++.+++++....+.. + ..++|..+..-+.+.|..+..
T Consensus 155 ~~~~rr~~~~~~ggfd~~~---~--~~~eD~d~~~r~~~~G~~~~~ 195 (237)
T cd02526 155 GSLISLEALEKVGGFDEDL---F--IDYVDTEWCLRARSKGYKIYV 195 (237)
T ss_pred ceEEcHHHHHHhCCCCHHH---c--CccchHHHHHHHHHcCCcEEE
Confidence 8999999999876432221 1 235799998888888866543
No 18
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=91.09 E-value=0.79 Score=40.50 Aligned_cols=81 Identities=17% Similarity=0.261 Sum_probs=45.9
Q ss_pred HHHHHHHHhcCCCccEEEEEcCCeeeeHH---HHHHHhhcCCCCCCEEEeecc-------------------cc--cccc
Q 048713 71 RIIWDSFKLNLPNVRWFVMGDDDTVFFTD---NLLSVLTRYDHNQMWYIGCNS-------------------ES--VEQN 126 (324)
Q Consensus 71 ~iv~~~~~~~~p~~~Wfv~~DDDTf~~~~---nL~~~Ls~yD~~~p~yIG~~s-------------------e~--~~~~ 126 (324)
.+.+++.+ .+.++.++.+||..+..+ .|.++++..+...-+.+|... .. ....
T Consensus 76 ~~w~~~v~---~~~~~~lIlEDDv~~~~~f~~~l~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (200)
T PF01755_consen 76 KAWQRIVD---SGLEYALILEDDVIFDPDFKEFLEEILSHIPDWDFLRLGGWKDNSYSPGDIFLSRLSTFLSRSKRYKRK 152 (200)
T ss_pred HHHHHHHH---cCCCeEEEEeccccccccHHHHHHHHHhhcccccchhhccccccccccccccceeeeehhhhhhhcccC
Confidence 34455553 468999999999998842 444444443323333332210 00 0000
Q ss_pred ---------ccccccccccceeEEEcHHHHHHHHHHh
Q 048713 127 ---------VMHAYDMAFGGGGFAVSYPLAEKLVNAL 154 (324)
Q Consensus 127 ---------~~~~~~fa~GGaGivLSr~ll~~L~~~~ 154 (324)
.........|.+||+||+..+++|....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~t~aY~Is~~gA~kLL~~~ 189 (200)
T PF01755_consen 153 PIPPFGSRKLIRPAKYPYGTCAYLISRKGARKLLEAS 189 (200)
T ss_pred cccccCCceEEeecCCCCcceeeeeCHHHHHHHHHhC
Confidence 0011123568899999999999998763
No 19
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=91.00 E-value=0.53 Score=40.87 Aligned_cols=92 Identities=13% Similarity=0.060 Sum_probs=56.7
Q ss_pred EEEEEcCCeeeeHHHHHHHhhcCCCCCCEEEe--ecc----ccc---cccc--------------cccccccccceeEEE
Q 048713 86 WFVMGDDDTVFFTDNLLSVLTRYDHNQMWYIG--CNS----ESV---EQNV--------------MHAYDMAFGGGGFAV 142 (324)
Q Consensus 86 Wfv~~DDDTf~~~~nL~~~Ls~yD~~~p~yIG--~~s----e~~---~~~~--------------~~~~~fa~GGaGivL 142 (324)
|+++.|+||.+..+-|.+++..++ +..+-++ ... ++. .+.. ..+.....-|+|.++
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~-~~~~~~vq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 79 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALE-DPKVDAVQGPIIFRNRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGMLF 79 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHh-CCCceEEEccEEecCCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCcceee
Confidence 789999999999988888887776 2222221 110 100 0000 011112346999999
Q ss_pred cHHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHHhCCceec
Q 048713 143 SYPLAEKLVNALDGCLERYYYFYGSDQRIWACISEIGVSLTP 184 (324)
Q Consensus 143 Sr~ll~~L~~~~~~C~~~~~~~~~~D~~Lg~Cl~~~GV~lt~ 184 (324)
++++++++.... . ....+||..++.=+.+.|.++..
T Consensus 80 r~~~l~~vg~~~---~---~~~~~ED~~l~~~l~~~G~~~~~ 115 (193)
T PF13632_consen 80 RREALREVGGFD---D---PFSIGEDMDLGFRLRRAGYRIVY 115 (193)
T ss_pred eHHHHHHhCccc---c---cccccchHHHHHHHHHCCCEEEE
Confidence 999999875321 0 11356999998888888866543
No 20
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=90.01 E-value=1.2 Score=38.66 Aligned_cols=85 Identities=21% Similarity=0.276 Sum_probs=56.6
Q ss_pred CCccEEEEEcCCeeeeHHHHHHHhhcCC-CCCCEEEeeccccccccccccccccccceeEEEcHHHHHHHHHHhhhhhhh
Q 048713 82 PNVRWFVMGDDDTVFFTDNLLSVLTRYD-HNQMWYIGCNSESVEQNVMHAYDMAFGGGGFAVSYPLAEKLVNALDGCLER 160 (324)
Q Consensus 82 p~~~Wfv~~DDDTf~~~~nL~~~Ls~yD-~~~p~yIG~~se~~~~~~~~~~~fa~GGaGivLSr~ll~~L~~~~~~C~~~ 160 (324)
.+.+|+++.|||+.+..+.|.++++.+. +.-.++.|..... .+ .++|+++.+.+++++.. .++ .
T Consensus 78 ~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~------~~-----~~~~~~~~~~~~~~~g~-~~~---~ 142 (202)
T cd04185 78 LGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDP------DG-----SFVGVLISRRVVEKIGL-PDK---E 142 (202)
T ss_pred cCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcC------CC-----ceEEEEEeHHHHHHhCC-CCh---h
Confidence 4689999999999999888888877765 3333333332211 11 45789999999988742 121 1
Q ss_pred hccCCcchHHHHHHHHHhCCce
Q 048713 161 YYYFYGSDQRIWACISEIGVSL 182 (324)
Q Consensus 161 ~~~~~~~D~~Lg~Cl~~~GV~l 182 (324)
+ ..+++|..+..=+.+.|..+
T Consensus 143 ~-~~~~eD~~~~~r~~~~G~~i 163 (202)
T cd04185 143 F-FIWGDDTEYTLRASKAGPGI 163 (202)
T ss_pred h-hccchHHHHHHHHHHcCCcE
Confidence 1 13568999888888778665
No 21
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=89.38 E-value=0.84 Score=38.02 Aligned_cols=46 Identities=28% Similarity=0.464 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCCCccEEEEEcCCeeeeHHHHHHHhhcCCCCCCEEEeeccccccccccccccccccceeEEEcHHHHHHH
Q 048713 71 RIIWDSFKLNLPNVRWFVMGDDDTVFFTDNLLSVLTRYDHNQMWYIGCNSESVEQNVMHAYDMAFGGGGFAVSYPLAEKL 150 (324)
Q Consensus 71 ~iv~~~~~~~~p~~~Wfv~~DDDTf~~~~nL~~~Ls~yD~~~p~yIG~~se~~~~~~~~~~~fa~GGaGivLSr~ll~~L 150 (324)
.+.+++.+ .+.++.++.+||..+..+ |.+||+||+.++++|
T Consensus 73 ~~w~~~~~---~~~~~alIlEDDv~~~~~------------------------------------~~~~Y~vs~~~A~~l 113 (128)
T cd06532 73 KLWQKIVE---SNLEYALILEDDAILDPD------------------------------------GTAGYLVSRKGAKKL 113 (128)
T ss_pred HHHHHHHH---cCCCeEEEEccCcEECCC------------------------------------CceEEEeCHHHHHHH
Confidence 44455553 467899999999999877 778999999999999
Q ss_pred HHHhh
Q 048713 151 VNALD 155 (324)
Q Consensus 151 ~~~~~ 155 (324)
.....
T Consensus 114 l~~~~ 118 (128)
T cd06532 114 LAALE 118 (128)
T ss_pred HHhCC
Confidence 87643
No 22
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=88.99 E-value=1.6 Score=37.00 Aligned_cols=92 Identities=12% Similarity=0.152 Sum_probs=58.5
Q ss_pred CCccEEEEEcCCeeeeHHHHHHHhhcCCCCCCEEEeeccccccccccccccccccceeEEEcHHHHHHHHHHhhhhhhhh
Q 048713 82 PNVRWFVMGDDDTVFFTDNLLSVLTRYDHNQMWYIGCNSESVEQNVMHAYDMAFGGGGFAVSYPLAEKLVNALDGCLERY 161 (324)
Q Consensus 82 p~~~Wfv~~DDDTf~~~~nL~~~Ls~yD~~~p~yIG~~se~~~~~~~~~~~fa~GGaGivLSr~ll~~L~~~~~~C~~~~ 161 (324)
...+|++++|+|+.+..+.|.+++...++. ....|.......... .....|+++++.+..+.++. .++.+...+
T Consensus 78 a~g~~i~~lD~D~~~~~~~l~~~~~~~~~~-~~v~g~~~~~~~~~~----~~~~~~~~~~~~r~~~~~~g-gf~~~~~~~ 151 (182)
T cd06420 78 AKGDYLIFIDGDCIPHPDFIADHIELAEPG-VFLSGSRVLLNEKLT----ERGIRGCNMSFWKKDLLAVN-GFDEEFTGW 151 (182)
T ss_pred hcCCEEEEEcCCcccCHHHHHHHHHHhCCC-cEEecceeecccccc----eeEeccceEEEEHHHHHHhC-CCCcccccC
Confidence 457999999999999888788888776433 344555432211111 13346788889888888544 334333211
Q ss_pred ccCCcchHHHHHHHHHhCCce
Q 048713 162 YYFYGSDQRIWACISEIGVSL 182 (324)
Q Consensus 162 ~~~~~~D~~Lg~Cl~~~GV~l 182 (324)
.++|..++.=+.+.|+.+
T Consensus 152 ---~~eD~~l~~r~~~~g~~~ 169 (182)
T cd06420 152 ---GGEDSELVARLLNSGIKF 169 (182)
T ss_pred ---CcchHHHHHHHHHcCCcE
Confidence 258998888788888544
No 23
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=88.84 E-value=0.93 Score=40.04 Aligned_cols=93 Identities=12% Similarity=-0.007 Sum_probs=57.2
Q ss_pred CccEEEEEcCCeeeeHHHHHHHhhcCCCCCC-EEEeec-cc---cc----ccc-----------ccccc----cccccce
Q 048713 83 NVRWFVMGDDDTVFFTDNLLSVLTRYDHNQM-WYIGCN-SE---SV----EQN-----------VMHAY----DMAFGGG 138 (324)
Q Consensus 83 ~~~Wfv~~DDDTf~~~~nL~~~Ls~yD~~~p-~yIG~~-se---~~----~~~-----------~~~~~----~fa~GGa 138 (324)
+.+|++++|+|+++.++.|.++++.+..+.. -.++.. .. .. ... ...+. .....|+
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 163 (234)
T cd06421 84 TGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRWGAAFCCGS 163 (234)
T ss_pred CCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCceecCc
Confidence 6899999999999999888888887754222 233221 00 00 000 00000 1123578
Q ss_pred eEEEcHHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHHhCCce
Q 048713 139 GFAVSYPLAEKLVNALDGCLERYYYFYGSDQRIWACISEIGVSL 182 (324)
Q Consensus 139 GivLSr~ll~~L~~~~~~C~~~~~~~~~~D~~Lg~Cl~~~GV~l 182 (324)
|.++++.+++++... ++ . .+++|..++.=+.+.|..+
T Consensus 164 ~~~~r~~~~~~ig~~-~~---~---~~~eD~~l~~r~~~~g~~i 200 (234)
T cd06421 164 GAVVRREALDEIGGF-PT---D---SVTEDLATSLRLHAKGWRS 200 (234)
T ss_pred eeeEeHHHHHHhCCC-Cc---c---ceeccHHHHHHHHHcCceE
Confidence 999999999987532 21 1 2468988887777777654
No 24
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=88.07 E-value=1.4 Score=39.03 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=25.1
Q ss_pred CccEEEEEcCCeeeeHHHHHHHhhcCC
Q 048713 83 NVRWFVMGDDDTVFFTDNLLSVLTRYD 109 (324)
Q Consensus 83 ~~~Wfv~~DDDTf~~~~nL~~~Ls~yD 109 (324)
+.++++++|+|+.+..+.|.+++..++
T Consensus 77 ~~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 77 TTDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred CCCEEEEECCCceeChhHHHHHHHhcc
Confidence 689999999999999999999998886
No 25
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=87.85 E-value=2.1 Score=39.76 Aligned_cols=99 Identities=13% Similarity=0.060 Sum_probs=54.4
Q ss_pred CCccEEEEEcCCeeeeHHHHHHHhhcCCCC--CCEEEeecccc-----cccc--------------cc---ccccccccc
Q 048713 82 PNVRWFVMGDDDTVFFTDNLLSVLTRYDHN--QMWYIGCNSES-----VEQN--------------VM---HAYDMAFGG 137 (324)
Q Consensus 82 p~~~Wfv~~DDDTf~~~~nL~~~Ls~yD~~--~p~yIG~~se~-----~~~~--------------~~---~~~~fa~GG 137 (324)
.+.+|++++|||+.+..+.|.+++..++.. .-..+|...-. .... .. ....+ ..+
T Consensus 72 ~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 150 (281)
T TIGR01556 72 RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLDGLLLRQISLDGLTTPQKTSF-LIS 150 (281)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeecccceeeecccccCCceeccE-EEc
Confidence 378999999999999987777777655432 22333332100 0000 00 00001 135
Q ss_pred eeEEEcHHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHHhCCceecCC
Q 048713 138 GGFAVSYPLAEKLVNALDGCLERYYYFYGSDQRIWACISEIGVSLTPER 186 (324)
Q Consensus 138 aGivLSr~ll~~L~~~~~~C~~~~~~~~~~D~~Lg~Cl~~~GV~lt~~~ 186 (324)
+|.++++.+++++-. +++-. + ...+|..+..=+.+.|.++...|
T Consensus 151 sg~li~~~~~~~iG~-fde~~--f--i~~~D~e~~~R~~~~G~~i~~~~ 194 (281)
T TIGR01556 151 SGCLITREVYQRLGM-MDEEL--F--IDHVDTEWSLRAQNYGIPLYIDP 194 (281)
T ss_pred CcceeeHHHHHHhCC-ccHhh--c--ccchHHHHHHHHHHCCCEEEEeC
Confidence 678999999998753 22211 1 13467666444446786655444
No 26
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=87.11 E-value=1.2 Score=39.78 Aligned_cols=95 Identities=13% Similarity=0.019 Sum_probs=55.3
Q ss_pred CCccEEEEEcCCeeeeHHHHHHHhhcCCCCCCEEEeeccc------cc---cccc--------------cccccccccce
Q 048713 82 PNVRWFVMGDDDTVFFTDNLLSVLTRYDHNQMWYIGCNSE------SV---EQNV--------------MHAYDMAFGGG 138 (324)
Q Consensus 82 p~~~Wfv~~DDDTf~~~~nL~~~Ls~yD~~~p~yIG~~se------~~---~~~~--------------~~~~~fa~GGa 138 (324)
.+.+|++++|+|+.+..+.|.+++..+...+--.++...+ .. .+.. ..+..+...|+
T Consensus 86 a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 165 (232)
T cd06437 86 AKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSSTGLFFNFNGT 165 (232)
T ss_pred CCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhhcCCeEEeccc
Confidence 4689999999999999888888655543333223333211 00 0000 00111123456
Q ss_pred eEEEcHHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHHhCCcee
Q 048713 139 GFAVSYPLAEKLVNALDGCLERYYYFYGSDQRIWACISEIGVSLT 183 (324)
Q Consensus 139 GivLSr~ll~~L~~~~~~C~~~~~~~~~~D~~Lg~Cl~~~GV~lt 183 (324)
+.++.+++++++... +. . ...+|..|...+...|.++.
T Consensus 166 ~~~~rr~~~~~vgg~-~~---~---~~~ED~~l~~rl~~~G~~~~ 203 (232)
T cd06437 166 AGVWRKECIEDAGGW-NH---D---TLTEDLDLSYRAQLKGWKFV 203 (232)
T ss_pred hhhhhHHHHHHhCCC-CC---C---cchhhHHHHHHHHHCCCeEE
Confidence 667888888776422 22 1 24689999999888776654
No 27
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=86.97 E-value=8.7 Score=33.66 Aligned_cols=98 Identities=11% Similarity=0.056 Sum_probs=62.7
Q ss_pred CccEEEEEcCCeeeeHHHHHHHhhc-CCCCCCEEEeeccccccc-----ccc---------------cccccc-ccceeE
Q 048713 83 NVRWFVMGDDDTVFFTDNLLSVLTR-YDHNQMWYIGCNSESVEQ-----NVM---------------HAYDMA-FGGGGF 140 (324)
Q Consensus 83 ~~~Wfv~~DDDTf~~~~nL~~~Ls~-yD~~~p~yIG~~se~~~~-----~~~---------------~~~~fa-~GGaGi 140 (324)
..+|++++|+|..+.++.|.+++.. .+....+.+|........ ... .+..+. ...+..
T Consensus 82 ~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~g~~ 161 (211)
T cd04188 82 RGDYILFADADLATPFEELEKLEEALKTSGYDIAIGSRAHLASAAVVKRSWLRNLLGRGFNFLVRLLLGLGIKDTQCGFK 161 (211)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEeeccCCcccccccHHHHHHHHHHHHHHHHHcCCCCcccccCce
Confidence 3499999999999999888888887 466667888876432210 000 011111 123457
Q ss_pred EEcHHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHHhCCceecCC
Q 048713 141 AVSYPLAEKLVNALDGCLERYYYFYGSDQRIWACISEIGVSLTPER 186 (324)
Q Consensus 141 vLSr~ll~~L~~~~~~C~~~~~~~~~~D~~Lg~Cl~~~GV~lt~~~ 186 (324)
++++.+++++.+.... ..+..|..|..-+.+.|.++...|
T Consensus 162 ~~~r~~~~~~~~~~~~------~~~~~d~el~~r~~~~g~~~~~vp 201 (211)
T cd04188 162 LFTRDAARRLFPRLHL------ERWAFDVELLVLARRLGYPIEEVP 201 (211)
T ss_pred eEcHHHHHHHHhhhhc------cceEeeHHHHHHHHHcCCeEEEcC
Confidence 9999999988643111 135568888777777887665554
No 28
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=86.97 E-value=1.5 Score=38.31 Aligned_cols=67 Identities=13% Similarity=0.148 Sum_probs=41.6
Q ss_pred CccEEEEEcCCeeeeHHHHHHHhhcCCCCCCEEEeecc----cc-cc----ccc--------------ccccccccccee
Q 048713 83 NVRWFVMGDDDTVFFTDNLLSVLTRYDHNQMWYIGCNS----ES-VE----QNV--------------MHAYDMAFGGGG 139 (324)
Q Consensus 83 ~~~Wfv~~DDDTf~~~~nL~~~Ls~yD~~~p~yIG~~s----e~-~~----~~~--------------~~~~~fa~GGaG 139 (324)
..+|++++|.|+.+.++.|.+++..+...+--.++... .. .. +.. ..+ ....||.|
T Consensus 89 ~~d~v~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~-~~~~~G~~ 167 (191)
T cd06436 89 ERVIIAVIDADGRLDPNALEAVAPYFSDPRVAGTQSRVRMYNRHKNLLTILQDLEFFIIIAATQSLRALTG-TVGLGGNG 167 (191)
T ss_pred CccEEEEECCCCCcCHhHHHHHHHhhcCCceEEEeeeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhcC-cEEECCee
Confidence 35799999999999988888866555322222222211 00 00 000 011 23569999
Q ss_pred EEEcHHHHHHH
Q 048713 140 FAVSYPLAEKL 150 (324)
Q Consensus 140 ivLSr~ll~~L 150 (324)
.++++.+++++
T Consensus 168 ~~~r~~~l~~v 178 (191)
T cd06436 168 QFMRLSALDGL 178 (191)
T ss_pred EEEeHHHHHHh
Confidence 99999999998
No 29
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=86.53 E-value=4.7 Score=35.82 Aligned_cols=102 Identities=11% Similarity=0.109 Sum_probs=60.8
Q ss_pred HHHHhcCCCccEEEEEcCCeeeeHHHHHHHhhcCCCCCCEEEeecccccc--cc-----ccc-----------cc----c
Q 048713 75 DSFKLNLPNVRWFVMGDDDTVFFTDNLLSVLTRYDHNQMWYIGCNSESVE--QN-----VMH-----------AY----D 132 (324)
Q Consensus 75 ~~~~~~~p~~~Wfv~~DDDTf~~~~nL~~~Ls~yD~~~p~yIG~~se~~~--~~-----~~~-----------~~----~ 132 (324)
..++....+.+|+++.|+|+.+.++.|.++++.+...+--.++....... .. ..+ .. .
T Consensus 76 ~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (236)
T cd06435 76 YALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVSRNERNA 155 (236)
T ss_pred HHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecCccccCCCccHHHHHHhHHHHHHHHHHhccccccCc
Confidence 33433233579999999999999988888887775323223333211000 00 000 00 0
Q ss_pred ccccceeEEEcHHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHHhCCcee
Q 048713 133 MAFGGGGFAVSYPLAEKLVNALDGCLERYYYFYGSDQRIWACISEIGVSLT 183 (324)
Q Consensus 133 fa~GGaGivLSr~ll~~L~~~~~~C~~~~~~~~~~D~~Lg~Cl~~~GV~lt 183 (324)
....|++.++++.+++++.. ++++ .+.+|..++.=+.+.|.++.
T Consensus 156 ~~~~g~~~~~rr~~~~~iGg-f~~~------~~~eD~dl~~r~~~~G~~~~ 199 (236)
T cd06435 156 IIQHGTMCLIRRSALDDVGG-WDEW------CITEDSELGLRMHEAGYIGV 199 (236)
T ss_pred eEEecceEEEEHHHHHHhCC-CCCc------cccchHHHHHHHHHCCcEEE
Confidence 11246778999999999753 3332 14689999888877776654
No 30
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=86.14 E-value=1.2 Score=40.40 Aligned_cols=94 Identities=12% Similarity=0.121 Sum_probs=58.0
Q ss_pred CccEEEEEcCCeeeeHHHHHHHhhcCCCC--CCEEEeeccccc--ccc---------------------ccccccccccc
Q 048713 83 NVRWFVMGDDDTVFFTDNLLSVLTRYDHN--QMWYIGCNSESV--EQN---------------------VMHAYDMAFGG 137 (324)
Q Consensus 83 ~~~Wfv~~DDDTf~~~~nL~~~Ls~yD~~--~p~yIG~~se~~--~~~---------------------~~~~~~fa~GG 137 (324)
..+|++++|+|+.+.++.|.+++..+... +-.++|...... .+. ...+.....+|
T Consensus 84 ~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 163 (241)
T cd06427 84 RGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLARLGLPIPLGG 163 (241)
T ss_pred CCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCeeecCC
Confidence 46999999999999998888888776432 223444321100 000 00011134578
Q ss_pred eeEEEcHHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHHhCCcee
Q 048713 138 GGFAVSYPLAEKLVNALDGCLERYYYFYGSDQRIWACISEIGVSLT 183 (324)
Q Consensus 138 aGivLSr~ll~~L~~~~~~C~~~~~~~~~~D~~Lg~Cl~~~GV~lt 183 (324)
+++++++.+++++... +. + ...+|..+..=+.+.|.++.
T Consensus 164 ~~~~~rr~~~~~vgg~-~~----~--~~~eD~~l~~rl~~~G~r~~ 202 (241)
T cd06427 164 TSNHFRTDVLRELGGW-DP----F--NVTEDADLGLRLARAGYRTG 202 (241)
T ss_pred chHHhhHHHHHHcCCC-Cc----c--cchhhHHHHHHHHHCCceEE
Confidence 8899999999887543 11 1 24588888776666776553
No 31
>PRK11204 N-glycosyltransferase; Provisional
Probab=85.93 E-value=1.8 Score=42.81 Aligned_cols=98 Identities=12% Similarity=-0.018 Sum_probs=61.2
Q ss_pred CCccEEEEEcCCeeeeHHHHHHHhhcC--CCCCCEEEeeccccc-------ccc--------------ccccccccccce
Q 048713 82 PNVRWFVMGDDDTVFFTDNLLSVLTRY--DHNQMWYIGCNSESV-------EQN--------------VMHAYDMAFGGG 138 (324)
Q Consensus 82 p~~~Wfv~~DDDTf~~~~nL~~~Ls~y--D~~~p~yIG~~se~~-------~~~--------------~~~~~~fa~GGa 138 (324)
.+.+++++.|+|+.+.++.|.+++..+ |++-...-|.+.... .|. ...+..++.+|+
T Consensus 133 a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 212 (420)
T PRK11204 133 ARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRIRNRSTLLGRIQVGEFSSIIGLIKRAQRVYGRVFTVSGV 212 (420)
T ss_pred cCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCceeccchhHHHHHHHHHHHHhhhHHHHHHHHhCCceEecce
Confidence 468999999999999999888888877 333222333221000 000 001111334688
Q ss_pred eEEEcHHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHHhCCceecCC
Q 048713 139 GFAVSYPLAEKLVNALDGCLERYYYFYGSDQRIWACISEIGVSLTPER 186 (324)
Q Consensus 139 GivLSr~ll~~L~~~~~~C~~~~~~~~~~D~~Lg~Cl~~~GV~lt~~~ 186 (324)
+.++.+.+++++... +. ....+|..++.-+.+.|.++.-.|
T Consensus 213 ~~~~rr~~l~~vgg~-~~------~~~~ED~~l~~rl~~~G~~i~~~p 253 (420)
T PRK11204 213 ITAFRKSALHEVGYW-ST------DMITEDIDISWKLQLRGWDIRYEP 253 (420)
T ss_pred eeeeeHHHHHHhCCC-CC------CcccchHHHHHHHHHcCCeEEecc
Confidence 899999998886432 21 124689999988888887655433
No 32
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=85.15 E-value=3 Score=41.09 Aligned_cols=97 Identities=18% Similarity=0.090 Sum_probs=58.1
Q ss_pred CCccEEEEEcCCeeeeHHHHHHHhhcCCC-CCCEEEeecc---ccccc--------------------cccccccccccc
Q 048713 82 PNVRWFVMGDDDTVFFTDNLLSVLTRYDH-NQMWYIGCNS---ESVEQ--------------------NVMHAYDMAFGG 137 (324)
Q Consensus 82 p~~~Wfv~~DDDTf~~~~nL~~~Ls~yD~-~~p~yIG~~s---e~~~~--------------------~~~~~~~fa~GG 137 (324)
++.+|+++.|+|+.+.++.|.++++.+.. ...+.-|... ++... +...+....--|
T Consensus 132 ~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 211 (384)
T TIGR03469 132 PPADYLLLTDADIAHGPDNLARLVARARAEGLDLVSLMVRLRCESFWEKLLIPAFVFFFQKLYPFRWVNDPRRRTAAAAG 211 (384)
T ss_pred CCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEecccccCCCHHHHHHHHHHHHHHHHhcchhhhcCCCccceeecc
Confidence 34899999999999998888888776532 2222222211 10000 000000001136
Q ss_pred eeEEEcHHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHHhCCcee
Q 048713 138 GGFAVSYPLAEKLVNALDGCLERYYYFYGSDQRIWACISEIGVSLT 183 (324)
Q Consensus 138 aGivLSr~ll~~L~~~~~~C~~~~~~~~~~D~~Lg~Cl~~~GV~lt 183 (324)
+.+++++++.+++-..-+. . ....||..|++-+++.|.++.
T Consensus 212 ~~~lirr~~~~~vGGf~~~----~-~~~~ED~~L~~r~~~~G~~v~ 252 (384)
T TIGR03469 212 GCILIRREALERIGGIAAI----R-GALIDDCTLAAAVKRSGGRIW 252 (384)
T ss_pred eEEEEEHHHHHHcCCHHHH----h-hCcccHHHHHHHHHHcCCcEE
Confidence 7899999999998654221 1 124699999999999875543
No 33
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=83.26 E-value=1.8 Score=37.36 Aligned_cols=96 Identities=13% Similarity=0.061 Sum_probs=55.2
Q ss_pred CCccEEEEEcCCeeeeHHHHHHHhhcCC--CCCCEEEeeccc---cc---cccc---------cc-cccccccceeEEEc
Q 048713 82 PNVRWFVMGDDDTVFFTDNLLSVLTRYD--HNQMWYIGCNSE---SV---EQNV---------MH-AYDMAFGGGGFAVS 143 (324)
Q Consensus 82 p~~~Wfv~~DDDTf~~~~nL~~~Ls~yD--~~~p~yIG~~se---~~---~~~~---------~~-~~~fa~GGaGivLS 143 (324)
.+.+|++++|+|.++.++.|.+++..+. ++-.++.|.... .. .... .. .......|+++++.
T Consensus 79 a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 158 (201)
T cd04195 79 CTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIGKRRLPTSHDDILKFARRRSPFNHPTVMFR 158 (201)
T ss_pred cCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeeccccCCCCHHHHHHHhccCCCCCChHHhhh
Confidence 3689999999999999888888777653 333333333211 00 0000 00 00112345667777
Q ss_pred HHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHHhCCceec
Q 048713 144 YPLAEKLVNALDGCLERYYYFYGSDQRIWACISEIGVSLTP 184 (324)
Q Consensus 144 r~ll~~L~~~~~~C~~~~~~~~~~D~~Lg~Cl~~~GV~lt~ 184 (324)
+.+++++... +. ...++|..+...+...|.++..
T Consensus 159 r~~~~~~g~~-~~------~~~~eD~~~~~r~~~~g~~~~~ 192 (201)
T cd04195 159 KSKVLAVGGY-QD------LPLVEDYALWARMLANGARFAN 192 (201)
T ss_pred HHHHHHcCCc-CC------CCCchHHHHHHHHHHcCCceec
Confidence 7776665321 11 1357899999888877765543
No 34
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=82.43 E-value=3.2 Score=36.29 Aligned_cols=94 Identities=14% Similarity=0.055 Sum_probs=55.5
Q ss_pred CCccEEEEEcCCeeeeHHHHHHHhhcCC-CCCCEEEeecccccc-------cc-------------ccccccccccceeE
Q 048713 82 PNVRWFVMGDDDTVFFTDNLLSVLTRYD-HNQMWYIGCNSESVE-------QN-------------VMHAYDMAFGGGGF 140 (324)
Q Consensus 82 p~~~Wfv~~DDDTf~~~~nL~~~Ls~yD-~~~p~yIG~~se~~~-------~~-------------~~~~~~fa~GGaGi 140 (324)
...+|++++|+|+.+.++-|.+++..+. +....+.|....... +. ...+..+..-|+++
T Consensus 81 ~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 160 (229)
T cd04192 81 AKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGPVIYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANM 160 (229)
T ss_pred hcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeeeeeecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceE
Confidence 4689999999999998888888887553 444556665421100 00 00111122357889
Q ss_pred EEcHHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHHhCC
Q 048713 141 AVSYPLAEKLVNALDGCLERYYYFYGSDQRIWACISEIGV 180 (324)
Q Consensus 141 vLSr~ll~~L~~~~~~C~~~~~~~~~~D~~Lg~Cl~~~GV 180 (324)
++++.+++++-.. +. .. ....+|..+..-+...|.
T Consensus 161 ~~rr~~~~~~ggf-~~---~~-~~~~eD~~~~~~~~~~g~ 195 (229)
T cd04192 161 AYRKEAFFEVGGF-EG---ND-HIASGDDELLLAKVASKY 195 (229)
T ss_pred EEEHHHHHHhcCC-cc---cc-ccccCCHHHHHHHHHhCC
Confidence 9999999997543 11 11 123467666555544444
No 35
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=82.28 E-value=2.6 Score=42.40 Aligned_cols=98 Identities=11% Similarity=-0.058 Sum_probs=62.0
Q ss_pred CCccEEEEEcCCeeeeHHHHHHHhhcC--CCCCCEEEeeccccc-------ccc--------------ccccccccccce
Q 048713 82 PNVRWFVMGDDDTVFFTDNLLSVLTRY--DHNQMWYIGCNSESV-------EQN--------------VMHAYDMAFGGG 138 (324)
Q Consensus 82 p~~~Wfv~~DDDTf~~~~nL~~~Ls~y--D~~~p~yIG~~se~~-------~~~--------------~~~~~~fa~GGa 138 (324)
.+.+++++.|+|+.+..+.|.++++.+ |++-...-|.+.... .+. ...+..++.+|+
T Consensus 154 a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~sG~ 233 (444)
T PRK14583 154 ARSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVYGQVFTVSGV 233 (444)
T ss_pred CCCCEEEEECCCCCcCHHHHHHHHHHHHhCCCeEEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCceEecCc
Confidence 468999999999999998888888766 443333333221000 000 011222445788
Q ss_pred eEEEcHHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHHhCCceecCC
Q 048713 139 GFAVSYPLAEKLVNALDGCLERYYYFYGSDQRIWACISEIGVSLTPER 186 (324)
Q Consensus 139 GivLSr~ll~~L~~~~~~C~~~~~~~~~~D~~Lg~Cl~~~GV~lt~~~ 186 (324)
+.++.+.+++++.....+ ...||..++.-+...|-++..+|
T Consensus 234 ~~~~rr~al~~vGg~~~~-------~i~ED~dl~~rl~~~G~~i~~~p 274 (444)
T PRK14583 234 VAAFRRRALADVGYWSPD-------MITEDIDISWKLQLKHWSVFFEP 274 (444)
T ss_pred eeEEEHHHHHHcCCCCCC-------cccccHHHHHHHHHcCCeEEEee
Confidence 889999998886432111 24589999999998887665444
No 36
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=82.04 E-value=1.9 Score=37.09 Aligned_cols=38 Identities=13% Similarity=0.052 Sum_probs=29.6
Q ss_pred CCccEEEEEcCCeeeeHHHHHHHhhcCCCCCCEEEeec
Q 048713 82 PNVRWFVMGDDDTVFFTDNLLSVLTRYDHNQMWYIGCN 119 (324)
Q Consensus 82 p~~~Wfv~~DDDTf~~~~nL~~~Ls~yD~~~p~yIG~~ 119 (324)
.+.+|+++.|.|+.+.++.|.+++..+........|..
T Consensus 80 ~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~ 117 (183)
T cd06438 80 DDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYY 117 (183)
T ss_pred CCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEE
Confidence 46899999999999999888888877754444555543
No 37
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=81.65 E-value=5.7 Score=34.67 Aligned_cols=92 Identities=13% Similarity=0.169 Sum_probs=55.6
Q ss_pred CccEEEEEcCCeeeeHHHHHHHhhcCCCCCCEEEeecc-c--cc--ccc--------ccccccccccceeEEEcHHHHHH
Q 048713 83 NVRWFVMGDDDTVFFTDNLLSVLTRYDHNQMWYIGCNS-E--SV--EQN--------VMHAYDMAFGGGGFAVSYPLAEK 149 (324)
Q Consensus 83 ~~~Wfv~~DDDTf~~~~nL~~~Ls~yD~~~p~yIG~~s-e--~~--~~~--------~~~~~~fa~GGaGivLSr~ll~~ 149 (324)
..+|++++|+|+.+..+.|.+++........ .+|... . .. ... ........+++.|+++++.+.++
T Consensus 72 ~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 150 (221)
T cd02522 72 RGDWLLFLHADTRLPPDWDAAIIETLRADGA-VAGAFRLRFDDPGPRLRLLELGANLRSRLFGLPYGDQGLFIRRELFEE 150 (221)
T ss_pred cCCEEEEEcCCCCCChhHHHHHHHHhhcCCc-EEEEEEeeecCCccchhhhhhcccceecccCCCcCCceEEEEHHHHHH
Confidence 3699999999999998888887766544433 333321 1 00 000 00111234677899999998877
Q ss_pred HHHHhhhhhhhhccCCcchHHHHHHHHHhCCce
Q 048713 150 LVNALDGCLERYYYFYGSDQRIWACISEIGVSL 182 (324)
Q Consensus 150 L~~~~~~C~~~~~~~~~~D~~Lg~Cl~~~GV~l 182 (324)
+.. +++.. +.+|..+..=+.+.|...
T Consensus 151 ~G~-fd~~~------~~ED~d~~~r~~~~G~~~ 176 (221)
T cd02522 151 LGG-FPELP------LMEDVELVRRLRRRGRPA 176 (221)
T ss_pred hCC-CCccc------cccHHHHHHHHHhCCCEE
Confidence 743 22211 458887766666666543
No 38
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=81.13 E-value=6.2 Score=34.91 Aligned_cols=94 Identities=14% Similarity=0.012 Sum_probs=53.6
Q ss_pred CccEEEEEcCCeeeeHHHHHHHhhcC-CCCCCEEEeeccc---ccc------------ccc-------ccccccccccee
Q 048713 83 NVRWFVMGDDDTVFFTDNLLSVLTRY-DHNQMWYIGCNSE---SVE------------QNV-------MHAYDMAFGGGG 139 (324)
Q Consensus 83 ~~~Wfv~~DDDTf~~~~nL~~~Ls~y-D~~~p~yIG~~se---~~~------------~~~-------~~~~~fa~GGaG 139 (324)
+.+|++++|||+.+.++-|.+++..+ ++......|.... ... ... .....+...|++
T Consensus 81 ~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (249)
T cd02525 81 RGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAYRGGAVKIGYVDTVHH 160 (249)
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhccCCcccccccccccccccccc
Confidence 68999999999998888888888654 3333344443210 000 000 000012345677
Q ss_pred EEEcHHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHHhCCce
Q 048713 140 FAVSYPLAEKLVNALDGCLERYYYFYGSDQRIWACISEIGVSL 182 (324)
Q Consensus 140 ivLSr~ll~~L~~~~~~C~~~~~~~~~~D~~Lg~Cl~~~GV~l 182 (324)
.++++.+++++.. +++.. ..++|..+..=+.+.|..+
T Consensus 161 ~~~~~~~~~~~g~-~~~~~-----~~~eD~~l~~r~~~~G~~~ 197 (249)
T cd02525 161 GAYRREVFEKVGG-FDESL-----VRNEDAELNYRLRKAGYKI 197 (249)
T ss_pred ceEEHHHHHHhCC-CCccc-----CccchhHHHHHHHHcCcEE
Confidence 7889998888642 22222 1357887765555566554
No 39
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=79.95 E-value=8.7 Score=32.98 Aligned_cols=98 Identities=10% Similarity=0.002 Sum_probs=57.6
Q ss_pred CccEEEEEcCCeeeeHHHHHHHhhcCC--CCCCEEEeecccc---c---ccc------ccccccccccceeEEEcHHHHH
Q 048713 83 NVRWFVMGDDDTVFFTDNLLSVLTRYD--HNQMWYIGCNSES---V---EQN------VMHAYDMAFGGGGFAVSYPLAE 148 (324)
Q Consensus 83 ~~~Wfv~~DDDTf~~~~nL~~~Ls~yD--~~~p~yIG~~se~---~---~~~------~~~~~~fa~GGaGivLSr~ll~ 148 (324)
..+|++++|+|..+..+.|.++++.++ +.-.+..|..... . ... ...-......|++.++++.+++
T Consensus 83 ~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 162 (202)
T cd04184 83 TGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEGGKRSEPFFKPDWSPDLLLSQNYIGHLLVYRRSLVR 162 (202)
T ss_pred cCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccCCCCEeccccCCCCCHHHhhhcCCccceEeEEHHHHH
Confidence 569999999999998888888887762 3333333322110 0 000 0000113445677789999988
Q ss_pred HHHHHhhhhhhhhccCCcchHHHHHHHHHhCCceecCC
Q 048713 149 KLVNALDGCLERYYYFYGSDQRIWACISEIGVSLTPER 186 (324)
Q Consensus 149 ~L~~~~~~C~~~~~~~~~~D~~Lg~Cl~~~GV~lt~~~ 186 (324)
++..- +.. + ..++|..+..=+.+.|.++...|
T Consensus 163 ~iggf-~~~---~--~~~eD~~l~~rl~~~g~~~~~~~ 194 (202)
T cd04184 163 QVGGF-REG---F--EGAQDYDLVLRVSEHTDRIAHIP 194 (202)
T ss_pred HhCCC-CcC---c--ccchhHHHHHHHHhccceEEEcc
Confidence 87532 221 1 13578877766667777665544
No 40
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=79.85 E-value=13 Score=31.24 Aligned_cols=94 Identities=15% Similarity=0.093 Sum_probs=55.6
Q ss_pred CccEEEEEcCCeeeeHHHHHHHhhcC--CCCCCEEEeeccc---ccc-cc---------ccccccccccceeEEEcHHHH
Q 048713 83 NVRWFVMGDDDTVFFTDNLLSVLTRY--DHNQMWYIGCNSE---SVE-QN---------VMHAYDMAFGGGGFAVSYPLA 147 (324)
Q Consensus 83 ~~~Wfv~~DDDTf~~~~nL~~~Ls~y--D~~~p~yIG~~se---~~~-~~---------~~~~~~fa~GGaGivLSr~ll 147 (324)
..+|++++|+|..+..+.+.++|... ++...+..|.... ... .. ..........|+|+++++.++
T Consensus 75 ~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (202)
T cd06433 75 TGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRVIGRRRPPPFLDKFLLYGMPICHQATFFRRSLF 154 (202)
T ss_pred CCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCcccCCCCcchhhhHHhhcCcccCcceEEEHHHH
Confidence 57999999999999988888877322 3344455554321 000 00 000111345778899999999
Q ss_pred HHHHHHhhhhhhhhccCCcchHHHHHHHHHhCCce
Q 048713 148 EKLVNALDGCLERYYYFYGSDQRIWACISEIGVSL 182 (324)
Q Consensus 148 ~~L~~~~~~C~~~~~~~~~~D~~Lg~Cl~~~GV~l 182 (324)
+++.. ++. .+ ..++|..+..=+.+.|...
T Consensus 155 ~~~~~-f~~---~~--~~~~D~~~~~r~~~~g~~~ 183 (202)
T cd06433 155 EKYGG-FDE---SY--RIAADYDLLLRLLLAGKIF 183 (202)
T ss_pred HHhCC-Cch---hh--CchhhHHHHHHHHHcCCce
Confidence 88753 221 11 1357877666666666554
No 41
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=79.69 E-value=3.7 Score=36.91 Aligned_cols=30 Identities=13% Similarity=0.213 Sum_probs=24.7
Q ss_pred CccEEEEEcCCeeeeHHHHHHHhhcCCCCC
Q 048713 83 NVRWFVMGDDDTVFFTDNLLSVLTRYDHNQ 112 (324)
Q Consensus 83 ~~~Wfv~~DDDTf~~~~nL~~~Ls~yD~~~ 112 (324)
..+|++++|+|+.+..+-|.++++.+...+
T Consensus 109 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~ 138 (251)
T cd06439 109 TGEIVVFTDANALLDPDALRLLVRHFADPS 138 (251)
T ss_pred CCCEEEEEccccCcCHHHHHHHHHHhcCCC
Confidence 359999999999999888888888875333
No 42
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=79.62 E-value=9.1 Score=36.30 Aligned_cols=130 Identities=15% Similarity=0.114 Sum_probs=74.0
Q ss_pred CCeEecCCCCCcccccCchhHHHHHHHHHHHHHhcCCCccEEEEEcCCeeeeHHHHHHHhhcCCCCC-CEEEeeccccc-
Q 048713 46 IPYRVSDPGWTRFRYSSSRSAVRIARIIWDSFKLNLPNVRWFVMGDDDTVFFTDNLLSVLTRYDHNQ-MWYIGCNSESV- 123 (324)
Q Consensus 46 lP~~~~s~~~~~f~~~g~~~a~r~~~iv~~~~~~~~p~~~Wfv~~DDDTf~~~~nL~~~Ls~yD~~~-p~yIG~~se~~- 123 (324)
.|.+.+..+.....+.|-.. ..++.+... ..+|+++.++||.+..+.|.++|+..+... ...+|...-..
T Consensus 55 ~~~v~~i~~~~NlG~agg~n-----~g~~~a~~~---~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~ 126 (305)
T COG1216 55 FPNVRLIENGENLGFAGGFN-----RGIKYALAK---GDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYD 126 (305)
T ss_pred CCcEEEEEcCCCccchhhhh-----HHHHHHhcC---CCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCC
Confidence 47777655444433332222 233444432 233999999999998888887776554332 22333321000
Q ss_pred ------cc----------------cc-cc-----ccccc-ccceeEEEcHHHHHHHHHHhhhhhhhhccCCcchHHHHHH
Q 048713 124 ------EQ----------------NV-MH-----AYDMA-FGGGGFAVSYPLAEKLVNALDGCLERYYYFYGSDQRIWAC 174 (324)
Q Consensus 124 ------~~----------------~~-~~-----~~~fa-~GGaGivLSr~ll~~L~~~~~~C~~~~~~~~~~D~~Lg~C 174 (324)
.. .. .. ....+ .-|+.+++++.+++++.. +++ .+ -.+.+|..++.=
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~-~de---~~-F~y~eD~D~~~R 201 (305)
T COG1216 127 ESLYIDRRGGESDGLTGGWRASPLLEIAPDLSSYLEVVASLSGACLLIRREAFEKVGG-FDE---RF-FIYYEDVDLCLR 201 (305)
T ss_pred CCcchheeccccccccccceecccccccccccchhhhhhhcceeeeEEcHHHHHHhCC-CCc---cc-ceeehHHHHHHH
Confidence 00 00 00 00012 478889999999999865 333 22 135799998888
Q ss_pred HHHhCCceecCCCC
Q 048713 175 ISEIGVSLTPERGF 188 (324)
Q Consensus 175 l~~~GV~lt~~~gf 188 (324)
+.++|.++--.|..
T Consensus 202 ~~~~G~~i~~~p~a 215 (305)
T COG1216 202 ARKAGYKIYYVPDA 215 (305)
T ss_pred HHHcCCeEEEeecc
Confidence 88899877665554
No 43
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=79.27 E-value=9.1 Score=32.95 Aligned_cols=93 Identities=15% Similarity=0.155 Sum_probs=55.7
Q ss_pred CCCccEEEEEcCCeeeeHHHHHHHhhc-CCCCCCEEEeecc----ccc--cccc---ccc-----------cccccccee
Q 048713 81 LPNVRWFVMGDDDTVFFTDNLLSVLTR-YDHNQMWYIGCNS----ESV--EQNV---MHA-----------YDMAFGGGG 139 (324)
Q Consensus 81 ~p~~~Wfv~~DDDTf~~~~nL~~~Ls~-yD~~~p~yIG~~s----e~~--~~~~---~~~-----------~~fa~GGaG 139 (324)
..+.+|+++.|+|..+.++.|.+++.. .......+++... +.. .... ... ......|++
T Consensus 77 ~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (214)
T cd04196 77 AADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSFNNLLFQNVVTGCT 156 (214)
T ss_pred hCCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccCHHHHHHhCccCCce
Confidence 357899999999999998888888876 3333444444431 100 0000 000 012346889
Q ss_pred EEEcHHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHHhC
Q 048713 140 FAVSYPLAEKLVNALDGCLERYYYFYGSDQRIWACISEIG 179 (324)
Q Consensus 140 ivLSr~ll~~L~~~~~~C~~~~~~~~~~D~~Lg~Cl~~~G 179 (324)
+++.+.+++++...... . ...+|..+..++...|
T Consensus 157 ~~~r~~~~~~~~~~~~~-~-----~~~~D~~~~~~~~~~~ 190 (214)
T cd04196 157 MAFNRELLELALPFPDA-D-----VIMHDWWLALLASAFG 190 (214)
T ss_pred eeEEHHHHHhhcccccc-c-----cccchHHHHHHHHHcC
Confidence 99999999987643111 0 2457887777776644
No 44
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=79.24 E-value=5.1 Score=39.23 Aligned_cols=98 Identities=13% Similarity=0.085 Sum_probs=61.4
Q ss_pred CCccEEEEEcCCeeeeHHHHHHHhhcCC-CCCCEEEeecccccc-c-----------cc--c--------cc-ccccccc
Q 048713 82 PNVRWFVMGDDDTVFFTDNLLSVLTRYD-HNQMWYIGCNSESVE-Q-----------NV--M--------HA-YDMAFGG 137 (324)
Q Consensus 82 p~~~Wfv~~DDDTf~~~~nL~~~Ls~yD-~~~p~yIG~~se~~~-~-----------~~--~--------~~-~~fa~GG 137 (324)
...+|+++.|+|+.+.++-|.++++.+. ++-.+.-| ...... + +. . .+ ..++ .|
T Consensus 125 a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~G 202 (373)
T TIGR03472 125 ARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVTC-LYRGRPVPGFWSRLGAMGINHNFLPSVMVARALGRARFC-FG 202 (373)
T ss_pred ccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEec-cccCCCCCCHHHHHHHHHhhhhhhHHHHHHHhccCCccc-cC
Confidence 4689999999999999999999888874 33332222 211100 0 00 0 00 0122 46
Q ss_pred eeEEEcHHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHHhCCceecCC
Q 048713 138 GGFAVSYPLAEKLVNALDGCLERYYYFYGSDQRIWACISEIGVSLTPER 186 (324)
Q Consensus 138 aGivLSr~ll~~L~~~~~~C~~~~~~~~~~D~~Lg~Cl~~~GV~lt~~~ 186 (324)
+.+++.|++++++... +. .. ....||..|+.=+.+.|.++...+
T Consensus 203 ~~~a~RR~~l~~iGGf-~~-~~---~~~~ED~~l~~~i~~~G~~v~~~~ 246 (373)
T TIGR03472 203 ATMALRRATLEAIGGL-AA-LA---HHLADDYWLGELVRALGLRVVLAP 246 (373)
T ss_pred hhhheeHHHHHHcCCh-HH-hc---ccchHHHHHHHHHHHcCCeEEecc
Confidence 7789999999887654 21 11 124699999999999887665443
No 45
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=76.69 E-value=8.6 Score=32.66 Aligned_cols=70 Identities=13% Similarity=0.092 Sum_probs=47.1
Q ss_pred CccEEEEEcCCeeeeHHHHHHHhhcCCCCCCEEEeecccccccc--------------ccccccc-cccceeEEEcHHHH
Q 048713 83 NVRWFVMGDDDTVFFTDNLLSVLTRYDHNQMWYIGCNSESVEQN--------------VMHAYDM-AFGGGGFAVSYPLA 147 (324)
Q Consensus 83 ~~~Wfv~~DDDTf~~~~nL~~~Ls~yD~~~p~yIG~~se~~~~~--------------~~~~~~f-a~GGaGivLSr~ll 147 (324)
..+|++++|+|+....+-|.++++..+....+.+|......... ...+... ..+|+.+++++.++
T Consensus 80 ~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 159 (181)
T cd04187 80 RGDAVITMDADLQDPPELIPEMLAKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKLSGVDIPDNGGDFRLMDRKVV 159 (181)
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEEcHHHH
Confidence 35999999999999887788888776666677788764322100 0011112 23567789999999
Q ss_pred HHHHH
Q 048713 148 EKLVN 152 (324)
Q Consensus 148 ~~L~~ 152 (324)
+++..
T Consensus 160 ~~i~~ 164 (181)
T cd04187 160 DALLL 164 (181)
T ss_pred HHHHh
Confidence 98764
No 46
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=75.46 E-value=16 Score=31.95 Aligned_cols=36 Identities=17% Similarity=0.133 Sum_probs=28.2
Q ss_pred ccEEEEEcCCeeeeHHHHHHHhhc-CCCCCCEEEeec
Q 048713 84 VRWFVMGDDDTVFFTDNLLSVLTR-YDHNQMWYIGCN 119 (324)
Q Consensus 84 ~~Wfv~~DDDTf~~~~nL~~~Ls~-yD~~~p~yIG~~ 119 (324)
.+|++++|+|..+.++.|..++.. .+....+.+|..
T Consensus 79 gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~ 115 (224)
T cd06442 79 GDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSR 115 (224)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEee
Confidence 489999999999988888888876 455556666754
No 47
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=74.40 E-value=11 Score=36.86 Aligned_cols=96 Identities=16% Similarity=0.100 Sum_probs=65.4
Q ss_pred CCccEEEEEcCCeeeeHHHHHHHhhcCCCCCCE-EEeecc-------ccc---cc--------------ccccccccccc
Q 048713 82 PNVRWFVMGDDDTVFFTDNLLSVLTRYDHNQMW-YIGCNS-------ESV---EQ--------------NVMHAYDMAFG 136 (324)
Q Consensus 82 p~~~Wfv~~DDDTf~~~~nL~~~Ls~yD~~~p~-yIG~~s-------e~~---~~--------------~~~~~~~fa~G 136 (324)
...+++++.|.||....+.|.+++..++..... ..|.+. +.. .+ ....+.....+
T Consensus 136 ~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 215 (439)
T COG1215 136 AKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKGGLISFLS 215 (439)
T ss_pred cCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhhHHHhhhhhhhcCCeEEEc
Confidence 359999999999999999999999988654443 555541 000 00 00112223458
Q ss_pred ceeEEEcHHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHHhCCceec
Q 048713 137 GGGFAVSYPLAEKLVNALDGCLERYYYFYGSDQRIWACISEIGVSLTP 184 (324)
Q Consensus 137 GaGivLSr~ll~~L~~~~~~C~~~~~~~~~~D~~Lg~Cl~~~GV~lt~ 184 (324)
|++.++-+++++++...... ...||..++.=+...|.++..
T Consensus 216 G~~~~~rr~aL~~~g~~~~~-------~i~ED~~lt~~l~~~G~~~~~ 256 (439)
T COG1215 216 GSSSAFRRSALEEVGGWLED-------TITEDADLTLRLHLRGYRVVY 256 (439)
T ss_pred ceeeeEEHHHHHHhCCCCCC-------ceeccHHHHHHHHHCCCeEEE
Confidence 99999999999998733222 245899999988887765443
No 48
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=73.58 E-value=9 Score=35.88 Aligned_cols=99 Identities=15% Similarity=0.085 Sum_probs=54.1
Q ss_pred CccEEEEEcCCeeeeHHHHHHHhhcCCCCCCEEEeeccc-----cc---cc----------------c-c----------
Q 048713 83 NVRWFVMGDDDTVFFTDNLLSVLTRYDHNQMWYIGCNSE-----SV---EQ----------------N-V---------- 127 (324)
Q Consensus 83 ~~~Wfv~~DDDTf~~~~nL~~~Ls~yD~~~p~yIG~~se-----~~---~~----------------~-~---------- 127 (324)
..+|++++|+|+.+...-|.++|+.+.......+|.... .. .. . .
T Consensus 83 ~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (299)
T cd02510 83 TGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEERRRESP 162 (299)
T ss_pred cCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCHHHhhhcCC
Confidence 579999999999998766666665543222222221100 00 00 0 0
Q ss_pred -cccccccccceeEEEcHHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHHhCCceecC
Q 048713 128 -MHAYDMAFGGGGFAVSYPLAEKLVNALDGCLERYYYFYGSDQRIWACISEIGVSLTPE 185 (324)
Q Consensus 128 -~~~~~fa~GGaGivLSr~ll~~L~~~~~~C~~~~~~~~~~D~~Lg~Cl~~~GV~lt~~ 185 (324)
.........|+.+++++.+.+++.. +++....+ ..+|..+..=+.+.|-.+...
T Consensus 163 ~~~~~~~~~~g~~~~irr~~~~~vGg-fDe~~~~~---~~ED~Dl~~R~~~~G~~i~~~ 217 (299)
T cd02510 163 TAPIRSPTMAGGLFAIDREWFLELGG-YDEGMDIW---GGENLELSFKVWQCGGSIEIV 217 (299)
T ss_pred CCCccCccccceeeEEEHHHHHHhCC-CCCccccc---CchhHHHHHHHHHcCCeEEEe
Confidence 0000123457789999999988753 33322211 247877666566677665443
No 49
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=72.88 E-value=6.7 Score=34.62 Aligned_cols=96 Identities=13% Similarity=0.059 Sum_probs=51.4
Q ss_pred CCccEEEEEcCCeeeeHHHHHHHhhcCCCCCCEEEeecccccc----c------ccc-----cc-----ccccccceeEE
Q 048713 82 PNVRWFVMGDDDTVFFTDNLLSVLTRYDHNQMWYIGCNSESVE----Q------NVM-----HA-----YDMAFGGGGFA 141 (324)
Q Consensus 82 p~~~Wfv~~DDDTf~~~~nL~~~Ls~yD~~~p~yIG~~se~~~----~------~~~-----~~-----~~fa~GGaGiv 141 (324)
...+|++++|+|+.+.++.|.+++..........+|....... . +.. .. ...+....+++
T Consensus 83 a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (219)
T cd06913 83 SSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGCQVRRIPEDSTERYTRWINTLTREQLLTQVYTSHGPTVIMPTWF 162 (219)
T ss_pred cCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEEEEEecCcccchhhHHHHHhcCHHHHHHHHHhhcCCccccccce
Confidence 3579999999999999887777665543223345565421100 0 000 00 00011223456
Q ss_pred EcHHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHHhCCce
Q 048713 142 VSYPLAEKLVNALDGCLERYYYFYGSDQRIWACISEIGVSL 182 (324)
Q Consensus 142 LSr~ll~~L~~~~~~C~~~~~~~~~~D~~Lg~Cl~~~GV~l 182 (324)
+++.+.+++.. +++... ..++|..+..-+...|.++
T Consensus 163 ~rr~~~~~~g~-f~~~~~----~~~eD~~l~~r~~~~g~~i 198 (219)
T cd06913 163 CSREWFSHVGP-FDEGGK----GVPEDLLFFYEHLRKGGGV 198 (219)
T ss_pred eehhHHhhcCC-ccchhc----cchhHHHHHHHHHHcCCce
Confidence 77777776643 222111 2458888877776666544
No 50
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=72.68 E-value=9.4 Score=32.18 Aligned_cols=37 Identities=16% Similarity=0.123 Sum_probs=29.4
Q ss_pred ccEEEEEcCCeeeeHHHHHHHhhc-CCCCCCEEEeecc
Q 048713 84 VRWFVMGDDDTVFFTDNLLSVLTR-YDHNQMWYIGCNS 120 (324)
Q Consensus 84 ~~Wfv~~DDDTf~~~~nL~~~Ls~-yD~~~p~yIG~~s 120 (324)
.+|++++|+|+.+.++.|.++++. ......+.+|...
T Consensus 80 gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~ 117 (185)
T cd04179 80 GDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGSRF 117 (185)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEee
Confidence 399999999999988888888887 4555667777653
No 51
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=71.58 E-value=14 Score=34.53 Aligned_cols=104 Identities=13% Similarity=0.102 Sum_probs=60.3
Q ss_pred CCccEEEEEcCCeeeeHHHHHHHhhcC--CCCC------CEEEeeccc-ccccc---c------cc------cccccccc
Q 048713 82 PNVRWFVMGDDDTVFFTDNLLSVLTRY--DHNQ------MWYIGCNSE-SVEQN---V------MH------AYDMAFGG 137 (324)
Q Consensus 82 p~~~Wfv~~DDDTf~~~~nL~~~Ls~y--D~~~------p~yIG~~se-~~~~~---~------~~------~~~fa~GG 137 (324)
.+.++++++|.|+.+.++.|.+++..+ ||.- ..++...+- ...+. . .. +....+.|
T Consensus 94 ~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 173 (254)
T cd04191 94 SRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQTAPKLIGAETLFARLQQFANRLYGPVFGRGLAAWQGGEGNYWG 173 (254)
T ss_pred CCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEeCCceeECCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccc
Confidence 467999999999999999999998876 4421 111111110 00000 0 00 10112358
Q ss_pred eeEEEcHHHHHHHHHH--hhhhhhhh-ccCCcchHHHHHHHHHhCCceecCC
Q 048713 138 GGFAVSYPLAEKLVNA--LDGCLERY-YYFYGSDQRIWACISEIGVSLTPER 186 (324)
Q Consensus 138 aGivLSr~ll~~L~~~--~~~C~~~~-~~~~~~D~~Lg~Cl~~~GV~lt~~~ 186 (324)
+++++.+.++.++... ..... .+ .....+|..++..+...|-.+.-.|
T Consensus 174 ~~~~~Rr~al~~~~~~~~i~g~g-~~~~~~l~eD~~l~~~~~~~G~ri~~~~ 224 (254)
T cd04191 174 HNAIIRVAAFMEHCALPVLPGRP-PFGGHILSHDFVEAALMRRAGWEVRLAP 224 (254)
T ss_pred eEEEEEHHHHHHhcCCccccCCC-CCCCCeecHHHHHHHHHHHcCCEEEEcc
Confidence 8899999988875321 11111 11 1124589999999998886655433
No 52
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=71.14 E-value=11 Score=34.29 Aligned_cols=145 Identities=10% Similarity=0.163 Sum_probs=70.6
Q ss_pred hhhhhhhhhhccCCCCcccEEEeccccc-cccccCCCCCCCCCeEecCCCCCcccccCchhHHHHHHHHHHHHHhcCCCc
Q 048713 6 WHDRTRYINLWWKPNRTRGFVWLDEEPR-EKNRASSTIANTIPYRVSDPGWTRFRYSSSRSAVRIARIIWDSFKLNLPNV 84 (324)
Q Consensus 6 w~~r~~~~~~ww~~~~~r~~v~~~~~~~-~~~~~~~~~~~~lP~~~~s~~~~~f~~~g~~~a~r~~~iv~~~~~~~~p~~ 84 (324)
++.=+.-++....|+ -.=+|-+|...+ ........-....|.+.+.++.-...|.|.-..--.+.+++++.+. .++.
T Consensus 12 ~~~~~~l~~~l~~~~-~~f~iHiD~k~~~~~~~~~~~~~~~~~nv~~v~~r~~v~WG~~S~v~A~l~ll~~al~~-~~~~ 89 (244)
T PF02485_consen 12 PEQLERLLRLLYHPD-NDFYIHIDKKSPDYFYEEIKKLISCFPNVHFVPKRVDVRWGGFSLVEATLNLLREALKR-DGDW 89 (244)
T ss_dssp HHHHHHHHHHH--TT-SEEEEEE-TTS-HHHHHHHHHHHCT-TTEEE-SS-----TTSHHHHHHHHHHHHHHHHH--S--
T ss_pred HHHHHHHHHHhcCCC-CEEEEEEcCCCChHHHHHHHHhcccCCceeecccccccccCCccHHHHHHHHHHHHHhc-CCCC
Confidence 344455667777775 466688998722 1111011112345777666654444444544444567888888874 4589
Q ss_pred cEEEEEcCCeeee--HHHHHHHhhcCCCCCCEEEeeccccccc-cc--ccc-c---------cccccceeEEEcHHHHHH
Q 048713 85 RWFVMGDDDTVFF--TDNLLSVLTRYDHNQMWYIGCNSESVEQ-NV--MHA-Y---------DMAFGGGGFAVSYPLAEK 149 (324)
Q Consensus 85 ~Wfv~~DDDTf~~--~~nL~~~Ls~yD~~~p~yIG~~se~~~~-~~--~~~-~---------~fa~GGaGivLSr~ll~~ 149 (324)
+||+++-.+.|-. .+.+.++|+..+....+.-+...+.... .. ... . .+..|..=++||+.+++-
T Consensus 90 ~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~GSqW~~Ltr~~v~~ 169 (244)
T PF02485_consen 90 DYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRPFFRKRTLYKGSQWFSLTRDFVEY 169 (244)
T ss_dssp -EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEEEEEEE--EEE-S--EEEHHHHHH
T ss_pred cEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeecccccccccccccceeeEeeHHHHHH
Confidence 9999999999888 4889999988644333222222111100 00 000 0 012355559999999999
Q ss_pred HHH
Q 048713 150 LVN 152 (324)
Q Consensus 150 L~~ 152 (324)
|..
T Consensus 170 il~ 172 (244)
T PF02485_consen 170 ILD 172 (244)
T ss_dssp HHH
T ss_pred hhh
Confidence 984
No 53
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=68.79 E-value=24 Score=31.85 Aligned_cols=98 Identities=14% Similarity=0.050 Sum_probs=55.1
Q ss_pred CccEEEEEcCCeeeeHHHHHHHhhcC-CCCCCEEEeeccccccc--------c-c----------ccccccc-ccceeEE
Q 048713 83 NVRWFVMGDDDTVFFTDNLLSVLTRY-DHNQMWYIGCNSESVEQ--------N-V----------MHAYDMA-FGGGGFA 141 (324)
Q Consensus 83 ~~~Wfv~~DDDTf~~~~nL~~~Ls~y-D~~~p~yIG~~se~~~~--------~-~----------~~~~~fa-~GGaGiv 141 (324)
..+|++++|+|..+.++.|.+++..+ +..-.+.+|........ . . ..+.... ..|+-.+
T Consensus 93 ~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~d~~g~~~~ 172 (243)
T PLN02726 93 SGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLAQTLLWPGVSDLTGSFRL 172 (243)
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHHHHHhCCCCCcCCCcccc
Confidence 57899999999999888888887765 34456777765321100 0 0 0000111 2344457
Q ss_pred EcHHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHHhCCceecCC
Q 048713 142 VSYPLAEKLVNALDGCLERYYYFYGSDQRIWACISEIGVSLTPER 186 (324)
Q Consensus 142 LSr~ll~~L~~~~~~C~~~~~~~~~~D~~Lg~Cl~~~GV~lt~~~ 186 (324)
+++.+++.+....+. ..+..|..|..=+...|.++...|
T Consensus 173 ~rr~~~~~i~~~~~~------~~~~~~~el~~~~~~~g~~i~~vp 211 (243)
T PLN02726 173 YKRSALEDLVSSVVS------KGYVFQMEIIVRASRKGYRIEEVP 211 (243)
T ss_pred eeHHHHHHHHhhccC------CCcEEehHHHHHHHHcCCcEEEeC
Confidence 899999988643221 123345544332334676665544
No 54
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=68.03 E-value=39 Score=35.05 Aligned_cols=100 Identities=14% Similarity=-0.042 Sum_probs=58.6
Q ss_pred CCccEEEEEcCCeeeeHHHHHHHhhcCCCCC-----CEEEeecccccc-----------c-----c--ccccccccccce
Q 048713 82 PNVRWFVMGDDDTVFFTDNLLSVLTRYDHNQ-----MWYIGCNSESVE-----------Q-----N--VMHAYDMAFGGG 138 (324)
Q Consensus 82 p~~~Wfv~~DDDTf~~~~nL~~~Ls~yD~~~-----p~yIG~~se~~~-----------~-----~--~~~~~~fa~GGa 138 (324)
...+++++.|.|+.+.++.|..+- ...++. +++.+....... . . ...|...+.+|.
T Consensus 157 ~~~d~vvi~DAD~~v~Pd~Lr~~~-~~~~~~~~VQ~pv~~~~~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~Gt 235 (504)
T PRK14716 157 IRFAIIVLHDAEDVIHPLELRLYN-YLLPRHDFVQLPVFSLPRDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSAGV 235 (504)
T ss_pred CCcCEEEEEcCCCCcCccHHHHHH-hhcCCCCEEecceeccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCe
Confidence 357999999999999988887653 222221 333222111000 0 0 001111235699
Q ss_pred eEEEcHHHHHHHHHHhhhhhhhh-ccCCcchHHHHHHHHHhCCceec
Q 048713 139 GFAVSYPLAEKLVNALDGCLERY-YYFYGSDQRIWACISEIGVSLTP 184 (324)
Q Consensus 139 GivLSr~ll~~L~~~~~~C~~~~-~~~~~~D~~Lg~Cl~~~GV~lt~ 184 (324)
|+++++.+++++....... .+ .....||..|+.-+...|.+...
T Consensus 236 g~afRR~aLe~l~~~~GG~--~fd~~sLTED~dLglRL~~~G~rv~y 280 (504)
T PRK14716 236 GTAFSRRALERLAAERGGQ--PFDSDSLTEDYDIGLRLKRAGFRQIF 280 (504)
T ss_pred eEEeEHHHHHHHHhhcCCC--CCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 9999999999985321110 01 01246999999999998876543
No 55
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=66.55 E-value=10 Score=29.74 Aligned_cols=73 Identities=15% Similarity=0.136 Sum_probs=44.5
Q ss_pred CccEEEEEcCCeeeeHHHHHHHhhcCCCCC-CEEEeeccccccccccccccccccceeEEEcHHHHHHHHHHhhhhhhhh
Q 048713 83 NVRWFVMGDDDTVFFTDNLLSVLTRYDHNQ-MWYIGCNSESVEQNVMHAYDMAFGGGGFAVSYPLAEKLVNALDGCLERY 161 (324)
Q Consensus 83 ~~~Wfv~~DDDTf~~~~nL~~~Ls~yD~~~-p~yIG~~se~~~~~~~~~~~fa~GGaGivLSr~ll~~L~~~~~~C~~~~ 161 (324)
+.+|++++|+|..+.++.+..++..+-..+ ...++ +-++++++++.++++....+. ..
T Consensus 77 ~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~------------------~~~~~~~~~~~~~~~~~~~~~-~~-- 135 (156)
T cd00761 77 RGEYILFLDADDLLLPDWLERLVAELLADPEADAVG------------------GPGNLLFRRELLEEIGGFDEA-LL-- 135 (156)
T ss_pred cCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEe------------------ccchheeeHHHHHHhCCcchH-hc--
Confidence 699999999999998887877644322211 11111 117889999999887654222 11
Q ss_pred ccCCcchHHHHHHHHHh
Q 048713 162 YYFYGSDQRIWACISEI 178 (324)
Q Consensus 162 ~~~~~~D~~Lg~Cl~~~ 178 (324)
.+++|..+..-+...
T Consensus 136 --~~~ed~~~~~~~~~~ 150 (156)
T cd00761 136 --SGEEDDDFLLRLLRG 150 (156)
T ss_pred --CCcchHHHHHHHHhh
Confidence 124666665444433
No 56
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=64.08 E-value=9.2 Score=30.90 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=23.1
Q ss_pred CccEEEEEcCCeeeeHHHHHHHhhcCCC-CCCEEEeec
Q 048713 83 NVRWFVMGDDDTVFFTDNLLSVLTRYDH-NQMWYIGCN 119 (324)
Q Consensus 83 ~~~Wfv~~DDDTf~~~~nL~~~Ls~yD~-~~p~yIG~~ 119 (324)
..+|++++|||+++..+.|.+++..++. .....+|..
T Consensus 78 ~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~ 115 (169)
T PF00535_consen 78 KGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSV 115 (169)
T ss_dssp -SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEE
T ss_pred ceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEE
Confidence 3449999999999997655555554433 333555554
No 57
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=59.22 E-value=46 Score=32.23 Aligned_cols=98 Identities=13% Similarity=0.135 Sum_probs=58.8
Q ss_pred CccEEEEEcCCeeeeHHHHHHHhhcC----CCCCCEEEeecccccc------cc---------------ccccccccccc
Q 048713 83 NVRWFVMGDDDTVFFTDNLLSVLTRY----DHNQMWYIGCNSESVE------QN---------------VMHAYDMAFGG 137 (324)
Q Consensus 83 ~~~Wfv~~DDDTf~~~~nL~~~Ls~y----D~~~p~yIG~~se~~~------~~---------------~~~~~~fa~GG 137 (324)
.-+|++++|.|+...++.+.+++... ++.-.+.+|++..... .. ...+..+..-.
T Consensus 162 ~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~~~~i~D~~ 241 (333)
T PTZ00260 162 RGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWYRNILMYGFHFIVNTICGTNLKDTQ 241 (333)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccccCcHHHHHHHHHHHHHHHHHcCCCcccCC
Confidence 46899999999998876655555443 3455688998742110 00 00111233345
Q ss_pred ee-EEEcHHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHHhCCceecCC
Q 048713 138 GG-FAVSYPLAEKLVNALDGCLERYYYFYGSDQRIWACISEIGVSLTPER 186 (324)
Q Consensus 138 aG-ivLSr~ll~~L~~~~~~C~~~~~~~~~~D~~Lg~Cl~~~GV~lt~~~ 186 (324)
.| -++|+.+++.+.+... .+ .+.-|..+-..+.+.|.++...|
T Consensus 242 ~Gfk~~~r~~~~~i~~~~~--~~----~~~fd~Ell~~a~~~g~~I~EvP 285 (333)
T PTZ00260 242 CGFKLFTRETARIIFPSLH--LE----RWAFDIEIVMIAQKLNLPIAEVP 285 (333)
T ss_pred CCeEEEeHHHHHHHhhhcc--cc----CccchHHHHHHHHHcCCCEEEEc
Confidence 56 4889999998854311 12 23447777766677787765544
No 58
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=55.76 E-value=26 Score=33.84 Aligned_cols=70 Identities=9% Similarity=0.012 Sum_probs=46.2
Q ss_pred CccEEEEEcCCeeeeHHHHHHHhhcCCCCCCEEEeeccccccc--------------cccccccccccceeE-EEcHHHH
Q 048713 83 NVRWFVMGDDDTVFFTDNLLSVLTRYDHNQMWYIGCNSESVEQ--------------NVMHAYDMAFGGGGF-AVSYPLA 147 (324)
Q Consensus 83 ~~~Wfv~~DDDTf~~~~nL~~~Ls~yD~~~p~yIG~~se~~~~--------------~~~~~~~fa~GGaGi-vLSr~ll 147 (324)
..+|++++|+|.-.+++.+.+++......-++..|........ +...+..+...++|+ ++++.++
T Consensus 90 ~gd~vv~~DaD~q~~p~~i~~l~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~~g~~~~d~~~gfr~~~r~~~ 169 (325)
T PRK10714 90 TGDLIITLDADLQNPPEEIPRLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRTTGKAMGDYGCMLRAYRRHIV 169 (325)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCcCeEEEcHHHH
Confidence 5799999999999999888888877643334555544221100 001222345677887 8999999
Q ss_pred HHHHH
Q 048713 148 EKLVN 152 (324)
Q Consensus 148 ~~L~~ 152 (324)
+++..
T Consensus 170 ~~l~~ 174 (325)
T PRK10714 170 DAMLH 174 (325)
T ss_pred HHHHH
Confidence 99853
No 59
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=52.95 E-value=45 Score=35.96 Aligned_cols=94 Identities=11% Similarity=0.089 Sum_probs=57.8
Q ss_pred CCccEEEEEcCCeeeeHHHHHHHhhcCCCCCC-EEEeecc----cc-cc------------ccc-----cccc----ccc
Q 048713 82 PNVRWFVMGDDDTVFFTDNLLSVLTRYDHNQM-WYIGCNS----ES-VE------------QNV-----MHAY----DMA 134 (324)
Q Consensus 82 p~~~Wfv~~DDDTf~~~~nL~~~Ls~yD~~~p-~yIG~~s----e~-~~------------~~~-----~~~~----~fa 134 (324)
.+.+++++.|.|+....+-|.+.+..+..+.. -.++.+. .+ .. +.. ..+. ...
T Consensus 227 a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~~~i~~g~~~~~~~~ 306 (713)
T TIGR03030 227 TDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFRRMPNENELFYGLIQDGNDFWNAAF 306 (713)
T ss_pred cCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHHHHHHHHHhhhCCee
Confidence 35699999999999999888888877632222 1222210 00 00 000 0000 012
Q ss_pred ccceeEEEcHHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHHhCCce
Q 048713 135 FGGGGFAVSYPLAEKLVNALDGCLERYYYFYGSDQRIWACISEIGVSL 182 (324)
Q Consensus 135 ~GGaGivLSr~ll~~L~~~~~~C~~~~~~~~~~D~~Lg~Cl~~~GV~l 182 (324)
+.|++.++.|++++++.....+ ...||..++..+.+.|-+.
T Consensus 307 ~~Gs~~~iRR~al~~iGGf~~~-------~vtED~~l~~rL~~~G~~~ 347 (713)
T TIGR03030 307 FCGSAAVLRREALDEIGGIAGE-------TVTEDAETALKLHRRGWNS 347 (713)
T ss_pred ecCceeEEEHHHHHHcCCCCCC-------CcCcHHHHHHHHHHcCCeE
Confidence 4688999999999887533111 2358999999999888654
No 60
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=52.17 E-value=18 Score=33.68 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=18.0
Q ss_pred HHHHHHHHhcCCCccEEEEEcCCeeeeH--HHHHHHhh
Q 048713 71 RIIWDSFKLNLPNVRWFVMGDDDTVFFT--DNLLSVLT 106 (324)
Q Consensus 71 ~iv~~~~~~~~p~~~Wfv~~DDDTf~~~--~nL~~~Ls 106 (324)
.+|+++.+. .|+++|++.+|.|++|.- -.|.+.|-
T Consensus 65 ~~lr~~m~~-~P~~~wv~~lD~Dali~n~~~~L~~~il 101 (239)
T PF05637_consen 65 PALRAAMKK-YPEAEWVWWLDSDALIMNPDFSLEEHIL 101 (239)
T ss_dssp HHHHHHHHH--TT-SEEEEE-TTEEE------------
T ss_pred HHHHHHHHh-CCCCCEEEEEcCCeEEEecccccccccc
Confidence 466666644 699999999999999983 35555544
No 61
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=49.86 E-value=80 Score=34.36 Aligned_cols=102 Identities=16% Similarity=0.013 Sum_probs=59.2
Q ss_pred CccEEEEEcCCeeeeHHHHHHHhhcCCCCCCEEEee-cccc------------------ccc--c--cccccccccccee
Q 048713 83 NVRWFVMGDDDTVFFTDNLLSVLTRYDHNQMWYIGC-NSES------------------VEQ--N--VMHAYDMAFGGGG 139 (324)
Q Consensus 83 ~~~Wfv~~DDDTf~~~~nL~~~Ls~yD~~~p~yIG~-~se~------------------~~~--~--~~~~~~fa~GGaG 139 (324)
..+-+++.|.|+.+-++.|. +++.+.......-+. .+.. +.. . ...+...+.+|.|
T Consensus 155 ~~~vvvi~DAD~~v~pd~L~-~~~~l~~~~~~VQ~p~~p~~~~~~~~~~~~~~~EFa~~~~~~~~~~~~lgg~~~l~G~~ 233 (727)
T PRK11234 155 AFAGFILHDAEDVISPMELR-LFNYLVERKDLIQIPVYPFEREWTHFTSGTYIDEFAELHGKDVPVREALAGQVPSAGVG 233 (727)
T ss_pred cccEEEEEcCCCCCChhHHH-HHHhhcCCCCeEeecccCCCccHHHHHHHHHHHHHHHHhhhhhHHHHHcCCCcccCCce
Confidence 45678889999999999997 444433222211110 0000 000 0 0011223568999
Q ss_pred EEEcHHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHHhCCceecCC
Q 048713 140 FAVSYPLAEKLVNALDGCLERYYYFYGSDQRIWACISEIGVSLTPER 186 (324)
Q Consensus 140 ivLSr~ll~~L~~~~~~C~~~~~~~~~~D~~Lg~Cl~~~GV~lt~~~ 186 (324)
+++||.+++.+.+.-..+.-. .....||..||.-|...|......+
T Consensus 234 ~af~Rr~l~al~~~ggg~~~~-~~~lTED~dlg~rL~~~G~~v~f~~ 279 (727)
T PRK11234 234 TCFSRRAVTALLEDGDGIAFD-VQSLTEDYDIGFRLKEKGMREIFVR 279 (727)
T ss_pred EEEecccHHHHHHhcCCCCcC-CCcchHHHHHHHHHHHCCCEEEEcc
Confidence 999999887776653222111 1134599999999999997664443
No 62
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=48.25 E-value=41 Score=30.54 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=31.6
Q ss_pred CchhHHH-HHHHHHHHHHhcCCCccEEEEEcCCeeeeHHHHHHHhhcCC
Q 048713 62 SSRSAVR-IARIIWDSFKLNLPNVRWFVMGDDDTVFFTDNLLSVLTRYD 109 (324)
Q Consensus 62 g~~~a~r-~~~iv~~~~~~~~p~~~Wfv~~DDDTf~~~~nL~~~Ls~yD 109 (324)
|...+.+ ++..+..... ..+.++++++|.||.+..+.|.+++..++
T Consensus 53 gk~~~~~~~~~~~~~~~~--~a~~e~i~~~DaD~~~~~~~l~~l~~~~~ 99 (244)
T cd04190 53 GKRDSQLWFFNYFCRVLF--PDDPEFILLVDADTKFDPDSIVQLYKAMD 99 (244)
T ss_pred cchHHHHHHHHHHHHHhh--cCCCCEEEEECCCCcCCHhHHHHHHHHHH
Confidence 4444333 3334444332 35789999999999999988888887764
No 63
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=47.32 E-value=28 Score=26.71 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=19.5
Q ss_pred CCCccEEEEEcCCeeeeHH----HHHHHh
Q 048713 81 LPNVRWFVMGDDDTVFFTD----NLLSVL 105 (324)
Q Consensus 81 ~p~~~Wfv~~DDDTf~~~~----nL~~~L 105 (324)
..+.+|++++|-|-|+..+ +|.++|
T Consensus 69 ~~~~dWvl~~D~DEfl~~~~~~~~l~~~L 97 (97)
T PF13704_consen 69 AFDADWVLFLDADEFLVPPPGRRSLRDFL 97 (97)
T ss_pred CCCCCEEEEEeeeEEEecCCCCCCHHHhC
Confidence 3578999999999999853 466554
No 64
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=46.21 E-value=14 Score=36.83 Aligned_cols=58 Identities=12% Similarity=0.133 Sum_probs=31.3
Q ss_pred hhhhhhhhhhccCCCCcccEEEeccccccccccCCCCCCCCCeEecC-CCCCcccccCchhHHHHHH
Q 048713 6 WHDRTRYINLWWKPNRTRGFVWLDEEPREKNRASSTIANTIPYRVSD-PGWTRFRYSSSRSAVRIAR 71 (324)
Q Consensus 6 w~~r~~~~~~ww~~~~~r~~v~~~~~~~~~~~~~~~~~~~lP~~~~s-~~~~~f~~~g~~~a~r~~~ 71 (324)
-..|.+-++..|-+. +....|+-....+ -+..+|+|... .++.+-.+...|.+.++++
T Consensus 104 ~~~~~~~v~~TW~~r-c~~~~f~s~~~s~-------~~~~f~~v~~~~~~g~~~~~~ktr~~~~yv~ 162 (364)
T KOG2246|consen 104 HVTRADAVKETWLKR-CDKGIFFSPTLSK-------DDSRFPTVYYNLPDGYRSLWRKTRIAFKYVY 162 (364)
T ss_pred ceeehhhhhcccccc-cCcceecCccCCC-------CCCcCceeeccCCcchHHHHHHHHHHHHHHH
Confidence 345677788888775 4455555432111 34557888775 4443323334455555443
No 65
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=42.08 E-value=37 Score=27.14 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=21.5
Q ss_pred CccEEEEEcCCeeeeHHHHHHHhhcC
Q 048713 83 NVRWFVMGDDDTVFFTDNLLSVLTRY 108 (324)
Q Consensus 83 ~~~Wfv~~DDDTf~~~~nL~~~Ls~y 108 (324)
+.+|++++|+|..+..+.|.+++..+
T Consensus 78 ~~~~i~~~D~D~~~~~~~l~~~~~~~ 103 (180)
T cd06423 78 KGDIVVVLDADTILEPDALKRLVVPF 103 (180)
T ss_pred CCCEEEEECCCCCcChHHHHHHHHHh
Confidence 78999999999999887787774443
No 66
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=39.92 E-value=82 Score=34.05 Aligned_cols=111 Identities=13% Similarity=0.009 Sum_probs=60.1
Q ss_pred HHHhcCCCccEEEEEcCCeeeeHHHHHHHhhcC--CCCC------CEEEeeccccc-ccc----cc-----cccc-----
Q 048713 76 SFKLNLPNVRWFVMGDDDTVFFTDNLLSVLTRY--DHNQ------MWYIGCNSESV-EQN----VM-----HAYD----- 132 (324)
Q Consensus 76 ~~~~~~p~~~Wfv~~DDDTf~~~~nL~~~Ls~y--D~~~------p~yIG~~se~~-~~~----~~-----~~~~----- 132 (324)
..+....+++++++.|.|+.+..+.|.+++..+ ||+- +..++..+--. .|. .+ .|..
T Consensus 213 ~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~vGlVQt~~~~~n~~slfaR~qqf~~~~y~~~~~~G~~~w~~~ 292 (691)
T PRK05454 213 FCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPRAGLIQTLPVAVGADTLFARLQQFATRVYGPLFAAGLAWWQGG 292 (691)
T ss_pred HHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCEEEEeCCccCcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 333334678999999999999999999998876 4431 11122111000 000 00 0000
Q ss_pred -ccccceeEEEcHHHHHHHHHH--hhhhhhhhccCCcchHHHHHHHHHhCCceecCC
Q 048713 133 -MAFGGGGFAVSYPLAEKLVNA--LDGCLERYYYFYGSDQRIWACISEIGVSLTPER 186 (324)
Q Consensus 133 -fa~GGaGivLSr~ll~~L~~~--~~~C~~~~~~~~~~D~~Lg~Cl~~~GV~lt~~~ 186 (324)
-.+-|...++.+.++.+.... .++...-..+...+|..++..+...|-++.-.|
T Consensus 293 ~g~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~GyrV~~~p 349 (691)
T PRK05454 293 EGNYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWGVWLAP 349 (691)
T ss_pred ccccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHCCCEEEEcC
Confidence 113466677888877654311 111000001234589999999998886554443
No 67
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=39.62 E-value=1.2e+02 Score=28.37 Aligned_cols=97 Identities=16% Similarity=0.159 Sum_probs=58.4
Q ss_pred CccEEEEEcCCeeeeHHHHHHHhh---cCCCCC-CEEEeec---ccccc-----c-------ccc----cc-----cccc
Q 048713 83 NVRWFVMGDDDTVFFTDNLLSVLT---RYDHNQ-MWYIGCN---SESVE-----Q-------NVM----HA-----YDMA 134 (324)
Q Consensus 83 ~~~Wfv~~DDDTf~~~~nL~~~Ls---~yD~~~-p~yIG~~---se~~~-----~-------~~~----~~-----~~fa 134 (324)
..++++++|.|.++.++.|.+.+. ..+... ..+++.. ++... . ... .+ ...+
T Consensus 88 ~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (281)
T PF10111_consen 88 RGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFISGKNSLWEFIA 167 (281)
T ss_pred CCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHhhcccccccccc
Confidence 789999999999999988888888 444332 3333222 11000 0 000 00 0123
Q ss_pred ccceeEEEcHHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHHhCCcee
Q 048713 135 FGGGGFAVSYPLAEKLVNALDGCLERYYYFYGSDQRIWACISEIGVSLT 183 (324)
Q Consensus 135 ~GGaGivLSr~ll~~L~~~~~~C~~~~~~~~~~D~~Lg~Cl~~~GV~lt 183 (324)
..|+-+++++....++..- |+ .|..-.+||..++.=|.+.|..+.
T Consensus 168 ~~s~~~~i~r~~f~~iGGf-DE---~f~G~G~ED~D~~~RL~~~~~~~~ 212 (281)
T PF10111_consen 168 FASSCFLINREDFLEIGGF-DE---RFRGWGYEDIDFGYRLKKAGYKFK 212 (281)
T ss_pred ccceEEEEEHHHHHHhCCC-Cc---cccCCCcchHHHHHHHHHcCCcEe
Confidence 4458899999988887543 22 222123589988888888876554
No 68
>PLN03181 glycosyltransferase; Provisional
Probab=30.97 E-value=58 Score=33.19 Aligned_cols=39 Identities=23% Similarity=0.415 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCCccEEEEEcCCeeeeHHHHHHHhhcCCC
Q 048713 71 RIIWDSFKLNLPNVRWFVMGDDDTVFFTDNLLSVLTRYDH 110 (324)
Q Consensus 71 ~iv~~~~~~~~p~~~Wfv~~DDDTf~~~~nL~~~Ls~yD~ 110 (324)
.+|+++... .|+++||..+|.||+|--.++.--|.+|+.
T Consensus 187 palRaAM~a-~PeAEWfWWLDsDALIMNp~~sLPl~ry~~ 225 (453)
T PLN03181 187 PVVRAAMLA-HPEAEWIWWVDSDAVFTDMDFKLPLHRYRD 225 (453)
T ss_pred HHHHHHHHH-CCCceEEEEecCCceeecCCCCCCHhhcCC
Confidence 556666544 799999999999999974333223556643
No 69
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=30.40 E-value=1.3e+02 Score=31.60 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=30.3
Q ss_pred CCCccEEEEEcCCeeeeHHHHHHHhhcCCCCCCEEEeeccc
Q 048713 81 LPNVRWFVMGDDDTVFFTDNLLSVLTRYDHNQMWYIGCNSE 121 (324)
Q Consensus 81 ~p~~~Wfv~~DDDTf~~~~nL~~~Ls~yD~~~p~yIG~~se 121 (324)
...++..+.+|.||-|-++.|.++++.... .|-.+|...+
T Consensus 199 ~~~~~~il~~DaDt~~~p~~~~~lv~~m~~-d~~i~gvCG~ 238 (527)
T PF03142_consen 199 PDFYEYILMVDADTKFDPDSVNRLVDAMER-DPKIGGVCGE 238 (527)
T ss_pred ccceEEEEEecCCceEcHHHHHHHHHHHcC-CCCeEEEece
Confidence 456899999999999999999999887643 2345555543
No 70
>PHA02688 ORF059 IMV protein VP55; Provisional
Probab=29.47 E-value=1.2e+02 Score=29.63 Aligned_cols=75 Identities=12% Similarity=0.124 Sum_probs=40.8
Q ss_pred CCCccEEEEEcCCeeeeH----HHHHHHhhcCCC----CCCEEEeeccccc-cccccccc-----cccccceeEEEcHHH
Q 048713 81 LPNVRWFVMGDDDTVFFT----DNLLSVLTRYDH----NQMWYIGCNSESV-EQNVMHAY-----DMAFGGGGFAVSYPL 146 (324)
Q Consensus 81 ~p~~~Wfv~~DDDTf~~~----~nL~~~Ls~yD~----~~p~yIG~~se~~-~~~~~~~~-----~fa~GGaGivLSr~l 146 (324)
.++.+++|++|||+.+.. .++.+.|.+-+- -...|.|..+... .+...... .+...=++|+|..+.
T Consensus 114 ~~~~~yivVlEDDnTi~~~~~~~~~I~~M~~n~idilQLre~~~~~~~~~~~~~~~~~~~~~Y~ggydvSLsAYIIr~~~ 193 (323)
T PHA02688 114 DKEDEYIVVVEDDNTLRDITTLHPIIKAMKEKNIDILQLRETLHNNNVRTLLNQEGNPALYSYTGGYDVSLSAYIIRVST 193 (323)
T ss_pred ccCCCeEEEEcCCCcccccHHHHHHHHHHHhcCeEEEEeehhhhCCcccccccCCCCcceEEecCCcceeeEEEEEeHHH
Confidence 567899999999999983 344444433110 1122333332211 01100000 122233789999999
Q ss_pred HHHHHHHhh
Q 048713 147 AEKLVNALD 155 (324)
Q Consensus 147 l~~L~~~~~ 155 (324)
|++|...+-
T Consensus 194 a~kl~~~~i 202 (323)
T PHA02688 194 AKKLYDEII 202 (323)
T ss_pred HHHHHHHHH
Confidence 999987643
No 71
>COG3306 Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=26.70 E-value=3.3e+02 Score=25.64 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=18.3
Q ss_pred cceeEEEcHHHHHHHHHHhhh
Q 048713 136 GGGGFAVSYPLAEKLVNALDG 156 (324)
Q Consensus 136 GGaGivLSr~ll~~L~~~~~~ 156 (324)
|=+||++|+.+++.+.+....
T Consensus 156 gt~gYiis~~aAk~fl~~~~~ 176 (255)
T COG3306 156 GTAGYIISRKAAKKFLELTES 176 (255)
T ss_pred CccceeecHHHHHHHHHHhhh
Confidence 679999999999999987554
No 72
>COG3506 Uncharacterized conserved protein [Function unknown]
Probab=22.47 E-value=64 Score=28.81 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=29.5
Q ss_pred hcCCCCceeeeeee-cCCcceEEEeeeeEE---EEEeCCCC
Q 048713 239 RIDPNRILQQSLCY-DTKREWSISISWGYT---IQIYPLFL 275 (324)
Q Consensus 239 ~~~~~~~~q~~~~~-d~~~~w~~~~s~Gys---v~~y~~~~ 275 (324)
++|++..+.-.|-| |+.+..++++++||| ++.+..+.
T Consensus 78 rlde~hWiKagIEy~dg~~~~SvVvt~g~SDWs~~~i~~~~ 118 (189)
T COG3506 78 RLDEQHWIKAGIEYTDGLALLSVVVTNGYSDWSTTPIHAPP 118 (189)
T ss_pred EEccCCeeEeeeEEecCceEEEEEEeCCccccEeeecCCCC
Confidence 56899999999988 788999999999986 55554443
No 73
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=22.36 E-value=6.1e+02 Score=27.66 Aligned_cols=97 Identities=11% Similarity=0.010 Sum_probs=57.0
Q ss_pred ccEEEEEcCCeeeeHHHHHHHhhcCCCCCCEE----Eeecc---------------cccc--cc--ccccccccccceeE
Q 048713 84 VRWFVMGDDDTVFFTDNLLSVLTRYDHNQMWY----IGCNS---------------ESVE--QN--VMHAYDMAFGGGGF 140 (324)
Q Consensus 84 ~~Wfv~~DDDTf~~~~nL~~~Ls~yD~~~p~y----IG~~s---------------e~~~--~~--~~~~~~fa~GGaGi 140 (324)
++=+++-|.|..+-++.|..+ +.+.++..+. +|... +.+. .. ..-+...+.||.|.
T Consensus 164 fa~vvi~DAEd~~~P~~L~~~-~~~~~~~~~iQ~pV~~~~~~~~~~l~~~~~~Efa~~~~~~l~~r~~l~~~ipl~Gv~~ 242 (703)
T PRK15489 164 FAGVILHDSEDVLHPLELKYF-NYLLPRKDLVQLPVLSLERKWYEWVAGTYMDEFAEWHQKDLVVRESLTGTVPSAGVGT 242 (703)
T ss_pred cceEEEEcCCCCCChhHHHHH-HhhcCCcceeeeeeccCCCccccHHHHHHHHHHHHHhhhHHHHHHHcCCceeccCcce
Confidence 344899999999999988654 5544443322 22110 0000 00 00122346799999
Q ss_pred EEcHHHHHHHHHHhhhhhhhhc-cCCcchHHHHHHHHHhCCcee
Q 048713 141 AVSYPLAEKLVNALDGCLERYY-YFYGSDQRIWACISEIGVSLT 183 (324)
Q Consensus 141 vLSr~ll~~L~~~~~~C~~~~~-~~~~~D~~Lg~Cl~~~GV~lt 183 (324)
++++.+++.+.+.-.... ++ ...-||..||.=+...|.+..
T Consensus 243 ~frr~aL~~l~~~gg~~~--~n~~sLTED~Dlg~RL~~~G~r~~ 284 (703)
T PRK15489 243 CFSRRALLALMKERGNQP--FNTSSLTEDYDFSFRLAELGMQEI 284 (703)
T ss_pred eeeHHHHHHHHHhcCCCC--CCCCCchHhHHHHHHHHHCCCceE
Confidence 999999999854311100 10 012489999999998887654
No 74
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=22.20 E-value=2.3e+02 Score=26.37 Aligned_cols=97 Identities=16% Similarity=0.126 Sum_probs=54.3
Q ss_pred CccEEEEEcCCeeeeHHHHHHHhhcCCCCCCEEEeecccccccc-----------ccccccccccceeEEEcHHHHHHHH
Q 048713 83 NVRWFVMGDDDTVFFTDNLLSVLTRYDHNQMWYIGCNSESVEQN-----------VMHAYDMAFGGGGFAVSYPLAEKLV 151 (324)
Q Consensus 83 ~~~Wfv~~DDDTf~~~~nL~~~Ls~yD~~~p~yIG~~se~~~~~-----------~~~~~~fa~GGaGivLSr~ll~~L~ 151 (324)
..+-++.+|||+.+..+.|.......-....-.+|.....+..+ ....|+|.-.|+ .++.+..+....
T Consensus 75 ~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~~R~h~~~~~~~~~~Y~~~~~~~ySmvLt~a-af~h~~yl~~Y~ 153 (247)
T PF09258_consen 75 ETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFPPRSHSWDPSSGRWKYTSEWSNEYSMVLTGA-AFYHRYYLELYT 153 (247)
T ss_dssp -SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-EEEEEEE-ETTEEEEE-SSS--BSEE-TTE-EEEETHHHHHHH
T ss_pred CcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCccceeecCCCccccccccCCCCcchhhhhhh-HhhcchHHHHHh
Confidence 58999999999999999887666654444556888764333111 011244554444 456666666655
Q ss_pred HHhh----hhhhhhccCCcchHHHHHHHHH-hCCce
Q 048713 152 NALD----GCLERYYYFYGSDQRIWACISE-IGVSL 182 (324)
Q Consensus 152 ~~~~----~C~~~~~~~~~~D~~Lg~Cl~~-~GV~l 182 (324)
.... +..++. .-|+|..|..-+++ +|-+.
T Consensus 154 ~~~p~~~r~~Vd~~--~NCEDI~mNflvs~~T~~pP 187 (247)
T PF09258_consen 154 HWLPASIREYVDEH--FNCEDIAMNFLVSNLTGKPP 187 (247)
T ss_dssp T-S-HHHHHHHHHH--TS-HHHHHHHHHHHHHSS-S
T ss_pred cCcHHHHHHHHhcc--CCHHHHHHHHHHHHhccCCC
Confidence 4221 122221 24799999988886 56544
No 75
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=22.17 E-value=1.7e+02 Score=32.59 Aligned_cols=92 Identities=12% Similarity=0.064 Sum_probs=57.0
Q ss_pred CCccEEEEEcCCeeeeHHHHHHHhhcC--CCCCCEEEeeccc----c-c------------cccc----------ccccc
Q 048713 82 PNVRWFVMGDDDTVFFTDNLLSVLTRY--DHNQMWYIGCNSE----S-V------------EQNV----------MHAYD 132 (324)
Q Consensus 82 p~~~Wfv~~DDDTf~~~~nL~~~Ls~y--D~~~p~yIG~~se----~-~------------~~~~----------~~~~~ 132 (324)
-+.+++++.|.|+....+-|.+.+..+ |++ --.++.+.. + . .+.. ..+.
T Consensus 338 a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~-VglVQtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~~iq~g~~~~~a- 415 (852)
T PRK11498 338 AKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKK-LAMMQTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDA- 415 (852)
T ss_pred CCCCEEEEECCCCCCChHHHHHHHHHHHhCCC-eEEEEcceeccCCchHHHhhHHHhhcccchhHHHHHHHhHHHhhcc-
Confidence 367999999999998888888777654 333 223332100 0 0 0000 0000
Q ss_pred ccccceeEEEcHHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHHhCCce
Q 048713 133 MAFGGGGFAVSYPLAEKLVNALDGCLERYYYFYGSDQRIWACISEIGVSL 182 (324)
Q Consensus 133 fa~GGaGivLSr~ll~~L~~~~~~C~~~~~~~~~~D~~Lg~Cl~~~GV~l 182 (324)
..+.|+..++.+++++++-....+ ...||..++..+.+.|-+.
T Consensus 416 ~~~~Gs~aviRReaLeeVGGfd~~-------titED~dlslRL~~~Gyrv 458 (852)
T PRK11498 416 TFFCGSCAVIRRKPLDEIGGIAVE-------TVTEDAHTSLRLHRRGYTS 458 (852)
T ss_pred cccccceeeeEHHHHHHhcCCCCC-------ccCccHHHHHHHHHcCCEE
Confidence 114678899999999998543211 2458999999999888544
No 76
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=21.91 E-value=2.1e+02 Score=28.19 Aligned_cols=76 Identities=17% Similarity=0.272 Sum_probs=49.5
Q ss_pred HHHHHHHhcCCCccEEEEEcCCeeeeHH---HHHHHhhcCCCCCCEE-Eeeccccc-cc------cccccccccccceeE
Q 048713 72 IIWDSFKLNLPNVRWFVMGDDDTVFFTD---NLLSVLTRYDHNQMWY-IGCNSESV-EQ------NVMHAYDMAFGGGGF 140 (324)
Q Consensus 72 iv~~~~~~~~p~~~Wfv~~DDDTf~~~~---nL~~~Ls~yD~~~p~y-IG~~se~~-~~------~~~~~~~fa~GGaGi 140 (324)
.+..++.. -+.+-++++|||-.+.++ -+.+.|..|..++.++ |.+-.... .. .... +.-.+.|.|.
T Consensus 88 aln~vF~~--~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~NdnG~~~~~~~~~~~ly-rs~ff~glGW 164 (334)
T cd02514 88 ALTQTFNL--FGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWNDNGKEHFVDDTPSLLY-RTDFFPGLGW 164 (334)
T ss_pred HHHHHHHh--cCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeeccCCcccccCCCcceEE-EecCCCchHH
Confidence 67777754 279999999999999986 6677777776665543 33221111 00 0000 1124689999
Q ss_pred EEcHHHHHHH
Q 048713 141 AVSYPLAEKL 150 (324)
Q Consensus 141 vLSr~ll~~L 150 (324)
++.+.+-+.+
T Consensus 165 ml~r~~W~e~ 174 (334)
T cd02514 165 MLTRKLWKEL 174 (334)
T ss_pred HHHHHHHHHh
Confidence 9999998887
No 77
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=20.73 E-value=9.3e+02 Score=24.78 Aligned_cols=91 Identities=18% Similarity=0.171 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHhc--CCCccEEEEEcCCeeeeHHHHHHHhhcCCC--CC------CEEEeeccccccccccccccccc
Q 048713 66 AVRIARIIWDSFKLN--LPNVRWFVMGDDDTVFFTDNLLSVLTRYDH--NQ------MWYIGCNSESVEQNVMHAYDMAF 135 (324)
Q Consensus 66 a~r~~~iv~~~~~~~--~p~~~Wfv~~DDDTf~~~~nL~~~Ls~yD~--~~------p~yIG~~se~~~~~~~~~~~fa~ 135 (324)
|-.....+..-++++ ..+-++|+-+|-=-=.-++.|.+.+.+.+. .+ -+.||...-+...+......|++
T Consensus 148 A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iNLkG~~IGNg~td~~~~~~~~~~~a~ 227 (454)
T KOG1282|consen 148 AKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNINLKGYAIGNGLTDPEIDYNGRIPFAW 227 (454)
T ss_pred HHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCcccceEEEecCcccCccccccchhhhhh
Confidence 445555555555541 335688888864222236889988887764 22 36788875333211212234666
Q ss_pred cceeEEEcHHHHHHHHHHhhhhh
Q 048713 136 GGGGFAVSYPLAEKLVNALDGCL 158 (324)
Q Consensus 136 GGaGivLSr~ll~~L~~~~~~C~ 158 (324)
|-| +||-++.+.|.+.-+.|.
T Consensus 228 ~h~--liSde~~~~l~~~C~~~~ 248 (454)
T KOG1282|consen 228 GHG--LISDELYESLKRACDFSS 248 (454)
T ss_pred hcc--cCCHHHHHHHHHHhccCc
Confidence 633 899999999987644443
No 78
>KOG4748 consensus Subunit of Golgi mannosyltransferase complex [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=20.35 E-value=1.1e+02 Score=30.48 Aligned_cols=30 Identities=17% Similarity=0.299 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhcCCCccEEEEEcCCeeee
Q 048713 67 VRIARIIWDSFKLNLPNVRWFVMGDDDTVFF 97 (324)
Q Consensus 67 ~r~~~iv~~~~~~~~p~~~Wfv~~DDDTf~~ 97 (324)
.--++|++++.+. .|+++|+=.+|-|+.+-
T Consensus 160 W~KiP~Ir~tM~k-yP~AeWIWWlD~DAlim 189 (364)
T KOG4748|consen 160 WAKLPAIRQTMLK-YPDAEWIWWLDQDALIM 189 (364)
T ss_pred hHHhHHHHHHHHH-CCCCcEEEEecccchhh
Confidence 3356788888865 89999999999999875
Done!