BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048718
(1118 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 114/242 (47%), Gaps = 23/242 (9%)
Query: 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKG-RVP--GC 567
+ + K+++ K + +V + G ++GPSGAGKTTF+ + G VP G
Sbjct: 2 VRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 568 IMSGTILV--NGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEK 625
+ LV NGK+ + R IG V Q ++ NLT EN+ F + + K E
Sbjct: 62 LYFDDRLVASNGKLI-VPPEDRKIGMVFQTWALYPNLTAFENIAFPLT---NMKMSKEEI 117
Query: 626 VLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLD 685
VE V + L + H+ + R +SGGQ++RV + +V +PSLL+LDEP S LD
Sbjct: 118 RKRVEEVAKILDIHHVLNHF-----PRELSGGQQQRVALARALVKDPSLLLLDEPFSNLD 172
Query: 686 SS-SSQXXXXXXXXXXXXGVNICTVVHQPSYALFRMFDDLILLAKGGVI-------VYHG 737
+ GV + V H P+ +F + D + +L KG ++ +Y
Sbjct: 173 ARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
Query: 738 PV 739
PV
Sbjct: 232 PV 233
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 135/296 (45%), Gaps = 40/296 (13%)
Query: 499 MANEIEIRKRPTIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLS 558
M+ E I K + + D T LKG N ++ R G V+A++G +G GK+T
Sbjct: 1 MSLEDYILKVEELNYNYSDGTHALKGINMNIKR--------GEVTAILGGNGVGKSTLFQ 52
Query: 559 ALKGRVPGCIMSGTILVNGK-----VASIQSYKRIIGFVPQD-DIVHGNLTVEENLWFSA 612
G + SG IL + K I + IG V QD D + +V +++ F A
Sbjct: 53 NFNGILKPS--SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGA 110
Query: 613 RCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEP 672
++ LP+ E V+ ++ G++H++D +S GQ+KRV + +VMEP
Sbjct: 111 ---VNMKLPEDEIRKRVDNALKRTGIEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEP 162
Query: 673 SLLILDEPTSGLDSSS-SQXXXXXXXXXXXXGVNICTVVHQPSYALFRMFDDLILLAKGG 731
+LILDEPT+GLD S+ G+ I H + ++ D + + K G
Sbjct: 163 KVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATH--DIDIVPLYCDNVFVMKEG 220
Query: 732 VIVYHGPVKKV---EEYFASLGITVPDRINPPDYFIDILEGIVKPSSSSGFDYKEL 784
++ G K+V +E + + +P RI + ++IL+ GF + EL
Sbjct: 221 RVILQGNPKEVFAEKEVIRKVNLRLP-RIG---HLMEILK------EKDGFVFDEL 266
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 104/214 (48%), Gaps = 22/214 (10%)
Query: 536 KLSPGRVSAVMGPSGAGKTTFLSALKG-RVPGCIMSGTILVNGK-VASIQSYKRIIGFVP 593
K+ G ++GP+GAGKT FL + G VP SG IL++GK V + K I FV
Sbjct: 22 KVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVY 78
Query: 594 QDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRG 653
Q+ + ++ V++NL F R + D PK +VL R L ++H+ D T
Sbjct: 79 QNYSLFPHMNVKKNLEFGMRMKKIKD-PK--RVLDTAR---DLKIEHLLDRNPLT----- 127
Query: 654 ISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQXXXXXXXXXXXXG-VNICTVVHQ 712
+SGG+++RV + +V P +L+LDEP S LD + + + + + H
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD 187
Query: 713 PSYALFRMFDDLILLAKGGVIVYHGPVKKVEEYF 746
+ A R+ D I + G ++ G K EE F
Sbjct: 188 QTEA--RIMADRIAVVMDGKLIQVG---KPEEIF 216
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 113/242 (46%), Gaps = 23/242 (9%)
Query: 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKG-RVP--GC 567
+ + K+++ K + +V + G ++GPSGAGKTTF+ + G VP G
Sbjct: 2 VRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 568 IMSGTILV--NGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEK 625
+ LV NGK+ + R IG V Q ++ NLT EN+ F + + K E
Sbjct: 62 LYFDDRLVASNGKLI-VPPEDRKIGMVFQTWALYPNLTAFENIAFPLT---NMKMSKEEI 117
Query: 626 VLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLD 685
VE V + L + H+ + R +SG Q++RV + +V +PSLL+LDEP S LD
Sbjct: 118 RKRVEEVAKILDIHHVLNHF-----PRELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
Query: 686 SS-SSQXXXXXXXXXXXXGVNICTVVHQPSYALFRMFDDLILLAKGGVI-------VYHG 737
+ GV + V H P+ +F + D + +L KG ++ +Y
Sbjct: 173 ARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
Query: 738 PV 739
PV
Sbjct: 232 PV 233
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 101/214 (47%), Gaps = 26/214 (12%)
Query: 540 GRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGK-VASIQSYKRIIGFVPQDDIV 598
G +GPSG GK+T L + G I SG + + K + +R +G V Q +
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGL--ETITSGDLFIGEKRMNDTPPAERGVGMVFQSYAL 86
Query: 599 HGNLTVEENLWFSARCRLSADLPKAEKVLV---VERVIESLGLQHIRDSLVGTVEKRGIS 655
+ +L+V EN+ F + L A+K ++ V +V E L L H+ D + + +S
Sbjct: 87 YPHLSVAENMSFGLK------LAGAKKEVINQRVNQVAEVLQLAHLLDR-----KPKALS 135
Query: 656 GGQRKRVNVGLEMVMEPSLLILDEPTSGLDSS-SSQXXXXXXXXXXXXGVNICTVVHQPS 714
GGQR+RV +G +V EPS+ +LDEP S LD++ Q G + V H
Sbjct: 136 GGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195
Query: 715 YALFRMFDDLILLAKGGVI-------VYHGPVKK 741
A+ + D +++L G V +YH P +
Sbjct: 196 EAM-TLADKIVVLDAGRVAQVGKPLELYHYPADR 228
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 101/214 (47%), Gaps = 26/214 (12%)
Query: 540 GRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGK-VASIQSYKRIIGFVPQDDIV 598
G +GPSG GK+T L + G I SG + + K + +R +G V Q +
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGL--ETITSGDLFIGEKRMNDTPPAERGVGMVFQSYAL 86
Query: 599 HGNLTVEENLWFSARCRLSADLPKAEKVLV---VERVIESLGLQHIRDSLVGTVEKRGIS 655
+ +L+V EN+ F + L A+K ++ V +V E L L H+ D + + +S
Sbjct: 87 YPHLSVAENMSFGLK------LAGAKKEVINQRVNQVAEVLQLAHLLDR-----KPKALS 135
Query: 656 GGQRKRVNVGLEMVMEPSLLILDEPTSGLDSS-SSQXXXXXXXXXXXXGVNICTVVHQPS 714
GGQR+RV +G +V EPS+ +LDEP S LD++ Q G + V H
Sbjct: 136 GGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195
Query: 715 YALFRMFDDLILLAKGGVI-------VYHGPVKK 741
A+ + D +++L G V +YH P +
Sbjct: 196 EAM-TLADKIVVLDAGRVAQVGKPLELYHYPADR 228
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 73.6 bits (179), Expect = 6e-13, Method: Composition-based stats.
Identities = 75/262 (28%), Positives = 121/262 (46%), Gaps = 29/262 (11%)
Query: 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGT 572
V K I K N + ++ K+ G A++GPSG+GK+T L + G SG
Sbjct: 2 VEIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP--TSGK 59
Query: 573 ILVNGK-VASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVER 631
I + K V + R +G V Q+ ++ ++TV +N+ F R KA + + ++
Sbjct: 60 IYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR------KAPREEIDKK 113
Query: 632 VIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDS-SSSQ 690
V E + HI D L+ + +SGGQ++RV + +V EP +L+LDEP S LD+ +
Sbjct: 114 VREVAKMLHI-DKLLNRYPWQ-LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE 171
Query: 691 XXXXXXXXXXXXGVNICTVVHQPSYALFRMFDDLILLAKGGVI-------VYHGPVKKVE 743
G+ V H + AL M D + ++ +G ++ VY+ P K
Sbjct: 172 VRAELKRLQKELGITTVYVTHDQAEAL-AMADRIAVIREGEILQVGTPDEVYYKPKYKFV 230
Query: 744 EYFASLGITVPDRINPPDYFID 765
F LG NPP F++
Sbjct: 231 GGF--LG-------NPPMNFVE 243
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 73.6 bits (179), Expect = 6e-13, Method: Composition-based stats.
Identities = 70/242 (28%), Positives = 116/242 (47%), Gaps = 18/242 (7%)
Query: 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGT 572
V KDL + GK K +++ ++ ++ G + ++GP+GAGKTT L + + SG
Sbjct: 16 VVVKDLRKRI-GK-KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS--SGI 71
Query: 573 ILVNGK--VASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVE 630
+ V GK V +++I ++P++ + N+ E L F A S+ +E +VE
Sbjct: 72 VTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASS---SSEIEEMVE 128
Query: 631 RVIESLGL-QHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSS 689
R E GL + I+D V T K G +++ + +++ P L ILDEPTSGLD ++
Sbjct: 129 RATEIAGLGEKIKDR-VSTYSK-----GMVRKLLIARALMVNPRLAILDEPTSGLDVLNA 182
Query: 690 QXXXXXXXXXXXXGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVEEYFASL 749
+ G+ I H F D I L G IV G V++++E + +
Sbjct: 183 REVRKILKQASQEGLTILVSSHNMLEVEF--LCDRIALIHNGTIVETGTVEELKERYKAQ 240
Query: 750 GI 751
I
Sbjct: 241 NI 242
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 73.2 bits (178), Expect = 7e-13, Method: Composition-based stats.
Identities = 49/143 (34%), Positives = 81/143 (56%), Gaps = 15/143 (10%)
Query: 545 VMGPSGAGKTTFLSALKGRV-PGCIMSGTILVNG-KVASIQSYKRIIGFVPQDDIVHGNL 602
++GP+GAGK+ FL + G V P G + +NG + + +R IGFVPQD + +L
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHL 85
Query: 603 TVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRV 662
+V N+ + R ++ + E+ V + E LG+ H+ D + +SGG+R+RV
Sbjct: 86 SVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDR-----KPARLSGGERQRV 135
Query: 663 NVGLEMVMEPSLLILDEPTSGLD 685
+ +V++P LL+LDEP S +D
Sbjct: 136 ALARALVIQPRLLLLDEPLSAVD 158
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 88/168 (52%), Gaps = 12/168 (7%)
Query: 526 NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVA---SI 582
++ ++R ++ + P + A GPSG GK+T S L+ +G I ++G+ S+
Sbjct: 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT--AGEITIDGQPIDNISL 71
Query: 583 QSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIR 642
++++ IGFV QD + T+ ENL + L D + V++ ++++
Sbjct: 72 ENWRSQIGFVSQDSAIMAG-TIRENLTYG----LEGDYTDEDLWQVLDLAFARSFVENMP 126
Query: 643 DSLVGTVEKRG--ISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSS 688
D L V +RG ISGGQR+R+ + + P +L+LDE T+ LDS S
Sbjct: 127 DQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSES 174
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 73.2 bits (178), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 111/237 (46%), Gaps = 20/237 (8%)
Query: 519 TITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGK 578
+++ + ++++ V + G++ V+G +G+GKTT L L G + +G I ++G
Sbjct: 16 SVSFRYNGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAA---AGEIFLDGS 72
Query: 579 VASIQSYKRIIGFV---PQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIES 635
A ++ +G+V P I+ TVEE++ FS L ++E +++V+E
Sbjct: 73 PADPFLLRKNVGYVFQNPSSQIIGA--TVEEDVAFSLEI---MGLDESEMRKRIKKVLEL 127
Query: 636 LGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQXXXXX 695
+GL S + + +SGGQ++R+ + + + L LDEP S LD S +
Sbjct: 128 VGL-----SGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQV 182
Query: 696 XXXXXXXGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKK-VEEYFASLGI 751
G I V H+ Y L M D IL G I + G ++ VE F + I
Sbjct: 183 LESLKNEGKGIILVTHELEY-LDDM--DFILHISNGTIDFCGSWEEFVEREFDDVEI 236
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 101/214 (47%), Gaps = 26/214 (12%)
Query: 540 GRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGK-VASIQSYKRIIGFVPQDDIV 598
G +GPSG GK+T L + G I SG + + K + +R +G V Q +
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGL--ETITSGDLFIGEKRMNDTPPAERGVGMVFQSYAL 86
Query: 599 HGNLTVEENLWFSARCRLSADLPKAEKVLV---VERVIESLGLQHIRDSLVGTVEKRGIS 655
+ +L+V EN+ F + L A+K ++ V +V E L L H+ D + + +S
Sbjct: 87 YPHLSVAENMSFGLK------LAGAKKEVINQRVNQVAEVLQLAHLLDR-----KPKALS 135
Query: 656 GGQRKRVNVGLEMVMEPSLLILDEPTSGLDSS-SSQXXXXXXXXXXXXGVNICTVVHQPS 714
GGQR+RV +G +V EPS+ +LD+P S LD++ Q G + V H
Sbjct: 136 GGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195
Query: 715 YALFRMFDDLILLAKGGVI-------VYHGPVKK 741
A+ + D +++L G V +YH P +
Sbjct: 196 EAM-TLADKIVVLDAGRVAQVGKPLELYHYPADR 228
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 71.6 bits (174), Expect = 3e-12, Method: Composition-based stats.
Identities = 64/228 (28%), Positives = 99/228 (43%), Gaps = 23/228 (10%)
Query: 522 LKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFL---SALKGRVPGCIMSGTILVNGK 578
LKG N H+ G V V+GPSG+GK+TFL + L+ G I+ I + K
Sbjct: 19 LKGINVHIRE--------GEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAK 70
Query: 579 VASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGL 638
++ + +G V Q + ++TV N+ + KAE + +E L
Sbjct: 71 DTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEA-----KAMELLDK 125
Query: 639 QHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQXXXXXXXX 698
++D +SGGQ +RV + + MEP +++ DEPTS LD
Sbjct: 126 VGLKDK--AHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ 183
Query: 699 XXXXGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVEEYF 746
G+ + V H+ +A R D +L GG I+ G K E+ F
Sbjct: 184 LANEGMTMVVVTHEMGFA--REVGDRVLFMDGGYIIEEG---KPEDLF 226
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 71.6 bits (174), Expect = 3e-12, Method: Composition-based stats.
Identities = 64/228 (28%), Positives = 99/228 (43%), Gaps = 23/228 (10%)
Query: 522 LKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFL---SALKGRVPGCIMSGTILVNGK 578
LKG N H+ G V V+GPSG+GK+TFL + L+ G I+ I + K
Sbjct: 40 LKGINVHIRE--------GEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAK 91
Query: 579 VASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGL 638
++ + +G V Q + ++TV N+ + KAE + +E L
Sbjct: 92 DTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEA-----KAMELLDK 146
Query: 639 QHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQXXXXXXXX 698
++D +SGGQ +RV + + MEP +++ DEPTS LD
Sbjct: 147 VGLKDK--AHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ 204
Query: 699 XXXXGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVEEYF 746
G+ + V H+ +A R D +L GG I+ G K E+ F
Sbjct: 205 LANEGMTMVVVTHEMGFA--REVGDRVLFMDGGYIIEEG---KPEDLF 247
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 69.3 bits (168), Expect = 1e-11, Method: Composition-based stats.
Identities = 70/257 (27%), Positives = 110/257 (42%), Gaps = 31/257 (12%)
Query: 530 MRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKG-RVPGCIMSGTILVNGKVAS------- 581
+R ++ ++ G ++GPSG GKTT L + G P G I + K+ +
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIF 75
Query: 582 IQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHI 641
+ R I V Q ++ ++TV +N+ F + R +P+ E V V E LGL +
Sbjct: 76 VPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTEL 132
Query: 642 RDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSS-SSQXXXXXXXXXX 700
+ + R +SGGQR+RV +G +V +P + ++DEP S LD+ +
Sbjct: 133 LNR-----KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR 187
Query: 701 XXGVNICTVVHQPSYALFRMFDDLILLAKGGVI--------VYHGPVKK-VEEYFASLGI 751
GV V H A+ D I + GV+ VY P V + S +
Sbjct: 188 QLGVTTIYVTHDQVEAM--TMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAGFIGSPPM 245
Query: 752 TVPDRINPPDYFIDILE 768
D I D F+D E
Sbjct: 246 NFLDAIVTEDGFVDFGE 262
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 85/158 (53%), Gaps = 15/158 (9%)
Query: 533 VTGKLSPGRVSAVMGPSGAGKTTFLSALKG---RVPGCIMSGTILVNGKVASIQSYKRII 589
V+ ++ G A++GPSG GKTT L L G G I +LVN I R +
Sbjct: 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVN----DIPPKYREV 77
Query: 590 GFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTV 649
G V Q+ ++ ++TV EN+ F R R + K V +RV+E + + + D+L+
Sbjct: 78 GMVFQNYALYPHMTVFENIAFPLRAR------RISKDEVEKRVVE-IARKLLIDNLLDR- 129
Query: 650 EKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSS 687
+ +SGGQ++RV + +V +P +L+ DEP S LD++
Sbjct: 130 KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDAN 167
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 66.6 bits (161), Expect = 7e-11, Method: Composition-based stats.
Identities = 57/218 (26%), Positives = 101/218 (46%), Gaps = 15/218 (6%)
Query: 530 MRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKG-RVPGCIMSGTILVNGK-VASIQSYKR 587
+R V+ ++ G + ++GPSG+GKTT L + G P G + + GK V + KR
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP---TKGDVWIGGKRVTDLPPQKR 87
Query: 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVG 647
+G V Q+ + ++TV +N+ F R +PK E V ++ + L+ +
Sbjct: 88 NVGLVFQNYALFQHMTVYDNVSFGLR---EKRVPKDEMDARVRELLRFMRLESYANRF-- 142
Query: 648 TVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSS-SSQXXXXXXXXXXXXGVNI 706
+SGGQ++RV + + P +L+ DEP + +D+ + GV
Sbjct: 143 ---PHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTS 199
Query: 707 CTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVEE 744
V H AL + D +++L +G V + P + E+
Sbjct: 200 VFVTHDQEEAL-EVADRVLVLHEGNVEQFGTPEEVYEK 236
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 98/188 (52%), Gaps = 15/188 (7%)
Query: 507 KRPTIEVAFKDLTITL-KGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVP 565
K+ + + F D+ + K N ++S+ + G A++G +G+GK+T ++ L R
Sbjct: 12 KKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKST-IAKLLYRFY 70
Query: 566 GCIMSGTILVNGKVASIQSYKR-----IIGFVPQDDIVHGNLTVEENLWFSARCRLSADL 620
G I + GK ++ Y R IIG VPQD I+ N T++ N+ + ++
Sbjct: 71 DA--EGDIKIGGK--NVNKYNRNSIRSIIGIVPQDTILF-NETIKYNILYGKLDATDEEV 125
Query: 621 PKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEP 680
KA K + IE+L + D++VG + +SGG+R+R+ + ++ +P ++I DE
Sbjct: 126 IKATKSAQLYDFIEALPKKW--DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEA 182
Query: 681 TSGLDSSS 688
TS LDS +
Sbjct: 183 TSSLDSKT 190
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 104/218 (47%), Gaps = 17/218 (7%)
Query: 525 KNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNG---KVAS 581
K +++ + K+ G+ A++G SG GK+T + ++ + G + ++G + +
Sbjct: 401 KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP--LDGMVSIDGQDIRTIN 458
Query: 582 IQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHI 641
++ + IIG V Q+ ++ T+ EN+ + ++ KA K I + L H
Sbjct: 459 VRYLREIIGVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFI--MKLPHQ 515
Query: 642 RDSLVGTVEKRG--ISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQXXXXXXXXX 699
D+LVG +RG +SGGQ++R+ + +V P +L+LDE TS LD + S+
Sbjct: 516 FDTLVG---ERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALD-TESEAVVQAALDK 571
Query: 700 XXXGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHG 737
G + H+ S D+I GGVIV G
Sbjct: 572 AREGRTTIVIAHRLSTV---RNADVIAGFDGGVIVEQG 606
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 123/253 (48%), Gaps = 36/253 (14%)
Query: 490 NMTFSGVISMANEIEIRKRPTIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPS 549
N+ FSGV+ RP+I V ++ ++ ++ G+ A++G S
Sbjct: 1030 NVQFSGVV-----FNYPTRPSIPV----------------LQGLSLEVKKGQTLALVGSS 1068
Query: 550 GAGKTTFLSALKGRVPGCIMSGTILVNGKVA---SIQSYKRIIGFVPQDDIVHGNLTVEE 606
G GK+T + L+ M+G++ ++GK ++Q + +G V Q+ I+ + ++ E
Sbjct: 1069 GCGKSTVVQLLERFYDP--MAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-DCSIAE 1125
Query: 607 NLWFSARCRLSA--DLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNV 664
N+ + R+ + ++ +A K + + I+SL ++ ++ VG + +SGGQ++R+ +
Sbjct: 1126 NIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKY--NTRVGD-KGTQLSGGQKQRIAI 1182
Query: 665 GLEMVMEPSLLILDEPTSGLDSSSSQXXXXXXXXXXXXGVNICTVVHQPSYALFRMFDDL 724
+V +P +L+LDE TS LD + S+ G + H+ S DL
Sbjct: 1183 ARALVRQPHILLLDEATSALD-TESEKVVQEALDKAREGRTCIVIAHRLSTI---QNADL 1238
Query: 725 ILLAKGGVIVYHG 737
I++ + G + HG
Sbjct: 1239 IVVIQNGKVKEHG 1251
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 104/218 (47%), Gaps = 17/218 (7%)
Query: 525 KNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNG---KVAS 581
K +++ + K+ G+ A++G SG GK+T + ++ + G + ++G + +
Sbjct: 401 KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP--LDGMVSIDGQDIRTIN 458
Query: 582 IQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHI 641
++ + IIG V Q+ ++ T+ EN+ + ++ KA K I + L H
Sbjct: 459 VRYLREIIGVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFI--MKLPHQ 515
Query: 642 RDSLVGTVEKRG--ISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQXXXXXXXXX 699
D+LVG +RG +SGGQ++R+ + +V P +L+LDE TS LD + S+
Sbjct: 516 FDTLVG---ERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALD-TESEAVVQAALDK 571
Query: 700 XXXGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHG 737
G + H+ S D+I GGVIV G
Sbjct: 572 AREGRTTIVIAHRLSTV---RNADVIAGFDGGVIVEQG 606
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 123/253 (48%), Gaps = 36/253 (14%)
Query: 490 NMTFSGVISMANEIEIRKRPTIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPS 549
N+ FSGV+ RP+I V ++ ++ ++ G+ A++G S
Sbjct: 1030 NVQFSGVV-----FNYPTRPSIPV----------------LQGLSLEVKKGQTLALVGSS 1068
Query: 550 GAGKTTFLSALKGRVPGCIMSGTILVNGKVA---SIQSYKRIIGFVPQDDIVHGNLTVEE 606
G GK+T + L+ M+G++ ++GK ++Q + +G V Q+ I+ + ++ E
Sbjct: 1069 GCGKSTVVQLLERFYDP--MAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-DCSIAE 1125
Query: 607 NLWFSARCRLSA--DLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNV 664
N+ + R+ + ++ +A K + + I+SL ++ ++ VG + +SGGQ++R+ +
Sbjct: 1126 NIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKY--NTRVGD-KGTQLSGGQKQRIAI 1182
Query: 665 GLEMVMEPSLLILDEPTSGLDSSSSQXXXXXXXXXXXXGVNICTVVHQPSYALFRMFDDL 724
+V +P +L+LDE TS LD + S+ G + H+ S DL
Sbjct: 1183 ARALVRQPHILLLDEATSALD-TESEKVVQEALDKAREGRTCIVIAHRLSTI---QNADL 1238
Query: 725 ILLAKGGVIVYHG 737
I++ + G + HG
Sbjct: 1239 IVVIQNGKVKEHG 1251
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 103/193 (53%), Gaps = 20/193 (10%)
Query: 507 KRPTIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPG 566
+R EV KD+T T +GK K + V+ + G+ A++G SG+GK+T ++ L R
Sbjct: 336 ERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKST-IANLFTRFYD 394
Query: 567 CIMSGTILVNGKVASIQSYK-----RIIGFVPQDDIVH-GNLTVEENLWFSARCRLSAD- 619
+ SG+I ++G ++ YK R V Q+ VH N T+ N+ ++A + +
Sbjct: 395 -VDSGSICLDGH--DVRDYKLTNLRRHFALVSQN--VHLFNDTIANNIAYAAEGEYTREQ 449
Query: 620 LPKAEKVLVVERVIESL--GLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLIL 677
+ +A + IE++ GL D+++G +SGGQR+RV + ++ + +LIL
Sbjct: 450 IEQAARQAHAMEFIENMPQGL----DTVIGE-NGTSLSGGQRQRVAIARALLRDAPVLIL 504
Query: 678 DEPTSGLDSSSSQ 690
DE TS LD+ S +
Sbjct: 505 DEATSALDTESER 517
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 113/226 (50%), Gaps = 37/226 (16%)
Query: 527 KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGK------VA 580
+ ++ V+ + PG+ A++GPSGAGK+T L L I SG I ++G+ A
Sbjct: 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD--ISSGCIRIDGQDISQVTQA 124
Query: 581 SIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH 640
S++S+ IG VPQD ++ N T+ +N+ + R++A + VE ++ G
Sbjct: 125 SLRSH---IGVVPQDTVLF-NDTIADNIRYG---RVTAGNDE------VEAAAQAAG--- 168
Query: 641 IRDSLVG-------TVEKRGI--SGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQX 691
I D+++ V +RG+ SGG+++RV + ++ P +++LDE TS LD+S+ +
Sbjct: 169 IHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERA 228
Query: 692 XXXXXXXXXXXGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHG 737
I V H+ S + D IL+ K G IV G
Sbjct: 229 IQASLAKVCANRTTIV-VAHRLSTVVNA---DQILVIKDGCIVERG 270
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 23/186 (12%)
Query: 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGT 572
++ KDL ++++ +K ++R ++ + PG V A+MGP+G+GK+T + L GR + GT
Sbjct: 2 LSIKDLHVSVE--DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGT 59
Query: 573 ILVNGKVASIQSYKRIIGFVPQDDIVHG-----NLTVE----ENLWFSARCRLSADLPKA 623
+ G K ++ P+D G VE N +F + +
Sbjct: 60 VEFKG--------KDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRG 111
Query: 624 EKVL----VVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDE 679
++ L + + E + L + + L+ G SGG++KR ++ V+EP L ILDE
Sbjct: 112 QETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDE 171
Query: 680 PTSGLD 685
SGLD
Sbjct: 172 SDSGLD 177
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 23/186 (12%)
Query: 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGT 572
++ KDL ++++ +K ++R ++ + PG V A+MGP+G+GK+T + L GR + GT
Sbjct: 21 LSIKDLHVSVE--DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGT 78
Query: 573 ILVNGKVASIQSYKRIIGFVPQDDIVHG-----NLTVE----ENLWFSARCRLSADLPKA 623
+ G K ++ P+D G VE N +F + +
Sbjct: 79 VEFKG--------KDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRG 130
Query: 624 EKVL----VVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDE 679
++ L + + E + L + + L+ G SGG++KR ++ V+EP L ILDE
Sbjct: 131 QETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDE 190
Query: 680 PTSGLD 685
SGLD
Sbjct: 191 SDSGLD 196
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 108/193 (55%), Gaps = 20/193 (10%)
Query: 507 KRPTIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPG 566
+R T +V F+++T T G++ +R++ K+ G+ A++G SG+GK+T +++L R
Sbjct: 336 ERATGDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKST-IASLITRFYD 394
Query: 567 CIMSGTILVNG---KVASIQSYKRIIGFVPQDDIVH-GNLTVEENLWFSARCRLSAD-LP 621
I G IL++G + ++ S + + V Q+ VH N TV N+ ++ + S + +
Sbjct: 395 -IDEGEILMDGHDLREYTLASLRNQVALVSQN--VHLFNDTVANNIAYARTEQYSREQIE 451
Query: 622 KAEKVLVVERVIESL--GLQHIRDSLVGTVEKRGI--SGGQRKRVNVGLEMVMEPSLLIL 677
+A ++ I + GL D+++G + G+ SGGQR+R+ + ++ + +LIL
Sbjct: 452 EAARMAYAMDFINKMDNGL----DTVIG---ENGVLLSGGQRQRIAIARALLRDSPILIL 504
Query: 678 DEPTSGLDSSSSQ 690
DE TS LD+ S +
Sbjct: 505 DEATSALDTESER 517
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 95/182 (52%), Gaps = 10/182 (5%)
Query: 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSG 571
E+ FK++ + K K +++ +T + PG+ A++GP+G+GKTT ++ L + G
Sbjct: 354 EIEFKNVWFSYD-KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD--VDRG 410
Query: 572 TILVNG-KVASIQ--SYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLV 628
ILV+G + I+ S + IG V QD I+ TV+ENL + ++ +A K+
Sbjct: 411 QILVDGIDIRKIKRSSLRSSIGIVLQDTILFST-TVKENLKYGNPGATDEEIKEAAKLTH 469
Query: 629 VERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSS 688
+ I+ L + V T +S GQR+ + + + P +LILDE TS +D+ +
Sbjct: 470 SDHFIKHLPEGY---ETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKT 526
Query: 689 SQ 690
+
Sbjct: 527 EK 528
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 91/165 (55%), Gaps = 13/165 (7%)
Query: 529 LMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNG---KVASIQSY 585
++R + +++ G+ A++G SG GK+T +S L ++ G I ++G + +++
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD--VLKGKITIDGVDVRDINLEFL 490
Query: 586 KRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSL 645
++ + V Q+ + N T+EEN+ ++ A K+ E+ I++L + ++L
Sbjct: 491 RKNVAVVSQEPALF-NCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGY--NTL 547
Query: 646 VGTVEKRG--ISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSS 688
VG RG +SGGQ++R+ + +V P +L+LDE TS LD+ S
Sbjct: 548 VG---DRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAES 589
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 101/202 (50%), Gaps = 19/202 (9%)
Query: 497 ISMANEIEIRKRPTIEVAFKDLTITLKGKNK-HLMRSVTGKLSPGRVSAVMGPSGAGKTT 555
+S+A E +K+ +V FK++ + + +++ ++ + PG+ A++GPSG GK+T
Sbjct: 1064 LSLAGE---KKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKST 1120
Query: 556 FLSALKGRVPGCIMSGTILVNG---KVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSA 612
++ L+ + G I ++G K + + + I V Q+ + + ++ EN+ +
Sbjct: 1121 VVALLERFYD--TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLF-DCSIAENIIYGL 1177
Query: 613 --RCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRG--ISGGQRKRVNVGLEM 668
A + +A ++ + I L + V RG +SGGQ++R+ + +
Sbjct: 1178 DPSSVTMAQVEEAARLANIHNFIAEL-----PEGFETRVGDRGTQLSGGQKQRIAIARAL 1232
Query: 669 VMEPSLLILDEPTSGLDSSSSQ 690
V P +L+LDE TS LD+ S +
Sbjct: 1233 VRNPKILLLDEATSALDTESEK 1254
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/178 (26%), Positives = 90/178 (50%), Gaps = 9/178 (5%)
Query: 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSG 571
++ +DL ++ G+ +++ V + G V A+MGP+GAGK+T L G + G
Sbjct: 3 QLEIRDLWASIDGET--ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERG 60
Query: 572 TILVNGK----VASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVL 627
IL++G+ ++ + ++ + Q + +T+ L + + +L ++ AE
Sbjct: 61 EILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWT 120
Query: 628 VVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLD 685
V++ +E L +S + G SGG++KR + +V+EP+ +LDE SGLD
Sbjct: 121 KVKKALELLDWD---ESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD 175
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 508 RPTIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTT-------FLSAL 560
R T+E+ + + G+ K L V+ ++ G V+ ++GP+G+GK+T FL A
Sbjct: 2 RDTMEILRTENIVKYFGEFKAL-DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD 60
Query: 561 KGRVPGCIMSGTILVNGKVASIQSYKRIIGF-VPQDDIVHGNLTVEENLWFSARCRLSAD 619
+GRV + N + A + Y + F PQ +TV ENL C +
Sbjct: 61 EGRV---YFENKDITNKEPAELYHYGIVRTFQTPQP---LKEMTVLENLLIGEICPGESP 114
Query: 620 L---------PKAEKVLVVE-RVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMV 669
L PK E+++ +++E L L H+ D G +SGGQ K V +G ++
Sbjct: 115 LNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALM 169
Query: 670 MEPSLLILDEPTSGLDSSSSQXXXXXXXXXXXXGVNICTVVHQPSYALFRMFDDLILLAK 729
P ++++DEP +G+ + G+ + H+ L D L ++
Sbjct: 170 TNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVL-NYIDHLYVMFN 228
Query: 730 GGVI 733
G +I
Sbjct: 229 GQII 232
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 105/192 (54%), Gaps = 20/192 (10%)
Query: 508 RPTIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC 567
R T ++ F+++T T G+ +R++ K+ G+ A++G SG+GK+T +++L R
Sbjct: 337 RATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKST-IASLITRFYD- 394
Query: 568 IMSGTILVNG---KVASIQSYKRIIGFVPQDDIVH-GNLTVEENLWFSARCRLSAD-LPK 622
I G IL++G + ++ S + + V Q+ VH N TV N+ ++ S + + +
Sbjct: 395 IDEGHILMDGHDLREYTLASLRNQVALVSQN--VHLFNDTVANNIAYARTEEYSREQIEE 452
Query: 623 AEKVLVVERVIESL--GLQHIRDSLVGTVEKRGI--SGGQRKRVNVGLEMVMEPSLLILD 678
A ++ I + GL D+++G + G+ SGGQR+R+ + ++ + +LILD
Sbjct: 453 AARMAYAMDFINKMDNGL----DTIIG---ENGVLLSGGQRQRIAIARALLRDSPILILD 505
Query: 679 EPTSGLDSSSSQ 690
E TS LD+ S +
Sbjct: 506 EATSALDTESER 517
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 89/192 (46%), Gaps = 19/192 (9%)
Query: 499 MANEIEIRKRPTIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLS 558
M N IE+ K +EV ++LT + N + + + G ++GPSG GKTT L
Sbjct: 1 MGNNIEVIK--MVEVKLENLT--KRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLR 56
Query: 559 ALKGR---VPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCR 615
+ G G I G + V + R I V Q V ++TV EN+ F + +
Sbjct: 57 MIAGLEEPTEGRIYFG----DRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK 112
Query: 616 LSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLL 675
PK E V E L ++ + + +SGGQR+RV V +V+EP +L
Sbjct: 113 ---KFPKDEIDKRVRWAAELLQIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEPDVL 164
Query: 676 ILDEPTSGLDSS 687
++DEP S LD+
Sbjct: 165 LMDEPLSNLDAK 176
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 13/163 (7%)
Query: 530 MRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKG-----RVPGCIMSGTILVNGKVASIQS 584
++ ++ ++ G ++GPSG GKTT L + G R I + K +
Sbjct: 22 VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPP 81
Query: 585 YKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDS 644
+R + V Q ++ + TV +N+ F + R +PK E V V E LGL + +
Sbjct: 82 KERDVAXVFQSYALYPHXTVYDNIAFPLKLR---KVPKQEIDKRVREVAEXLGLTELLNR 138
Query: 645 LVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSS 687
+ R +SGGQR+RV +G ++ P + + DEP S LD+
Sbjct: 139 -----KPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAK 176
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 17/167 (10%)
Query: 529 LMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC--IMSGTILVNG---KVASIQ 583
+++ + + G A +G SG GK+T ++ +P + SG IL++G K
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINL----IPRFYDVTSGQILIDGHNIKDFLTG 411
Query: 584 SYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRD 643
S + IG V QD+I+ + TV+EN+ ++ +A K+ I + L D
Sbjct: 412 SLRNQIGLVQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFI--MNLPQGYD 468
Query: 644 SLVGTVEKRGI--SGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSS 688
+ VG +RG+ SGGQ++R+++ + P +LILDE TS LD S
Sbjct: 469 TEVG---ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 512
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 17/195 (8%)
Query: 529 LMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYK-- 586
+++ ++ + G +++G SG+GK+T L L + G + + GK + K
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILG--LLDAPTEGKVFLEGKEVDYTNEKEL 76
Query: 587 -----RIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHI 641
R +GFV Q + LT EN+ L PK E E ++ LGL
Sbjct: 77 SLLRNRKLGFVFQFHYLIPELTALENVIVPM---LKMGKPKKEAKERGEYLLSELGLG-- 131
Query: 642 RDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQXXXXXXXXXXX 701
D L + + +SGG+++RV + + EP LL DEPT LDS++++
Sbjct: 132 -DKL--SRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE 188
Query: 702 XGVNICTVVHQPSYA 716
G +I V H+ A
Sbjct: 189 GGTSIVMVTHERELA 203
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 88/191 (46%), Gaps = 19/191 (9%)
Query: 500 ANEIEIRKRPTIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSA 559
N IE+ K +EV ++LT + N + + + G ++GPSG GKTT L
Sbjct: 1 GNNIEVIK--MVEVKLENLT--KRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRM 56
Query: 560 LKGR---VPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRL 616
+ G G I G + V + R I V Q V ++TV EN+ F + +
Sbjct: 57 IAGLEEPTEGRIYFG----DRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK- 111
Query: 617 SADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLI 676
PK E V E L ++ + + +SGGQR+RV V +V+EP +L+
Sbjct: 112 --KFPKDEIDKRVRWAAELLQIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEPDVLL 164
Query: 677 LDEPTSGLDSS 687
+DEP S LD+
Sbjct: 165 MDEPLSNLDAK 175
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 58.9 bits (141), Expect = 2e-08, Method: Composition-based stats.
Identities = 51/180 (28%), Positives = 93/180 (51%), Gaps = 9/180 (5%)
Query: 513 VAFKDLTITLKGKNKHL-MRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSG 571
V F+D++ + L ++ +T L PG V+A++GP+G+GK+T + L+ G
Sbjct: 15 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP--TGG 72
Query: 572 TILVNGKVASIQSYK---RIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLV 628
+L++GK ++ R + V Q+ V G +++EN+ + + + + A V
Sbjct: 73 QLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGR-SLQENIAYGLTQKPTMEEITAAAVKS 131
Query: 629 VERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSS 688
S GL D+ V + +SGGQR+ V + ++ +P +LILD+ TS LD++S
Sbjct: 132 GAHSFIS-GLPQGYDTEVDEAGSQ-LSGGQRQAVALARALIRKPCVLILDDATSALDANS 189
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 112/237 (47%), Gaps = 36/237 (15%)
Query: 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGR--VPGCIM 569
++ F+++ K + ++ ++ + G V ++G SG+GK+T L+ L R +P
Sbjct: 3 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKST-LTKLIQRFYIP---E 58
Query: 570 SGTILVNGK---VASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKV 626
+G +L++G +A +R +G V QD+++ N ++ +N+ A
Sbjct: 59 NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL-NRSIIDNISL------------ANPG 105
Query: 627 LVVERVIESLGLQHIRD----------SLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLI 676
+ VE+VI + L D ++VG + G+SGGQR+R+ + +V P +LI
Sbjct: 106 MSVEKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILI 164
Query: 677 LDEPTSGLDSSSSQXXXXXXXXXXXXGVNICTVVHQPSYALFRMFDDLILLAKGGVI 733
DE TS LD S+ G + + H+ S + D +I++ KG ++
Sbjct: 165 FDEATSALD-YESEHVIMRNMHKICKGRTVIIIAHRLSTV--KNADRIIVMEKGKIV 218
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 112/237 (47%), Gaps = 36/237 (15%)
Query: 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGR--VPGCIM 569
++ F+++ K + ++ ++ + G V ++G SG+GK+T L+ L R +P
Sbjct: 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKST-LTKLIQRFYIP---E 56
Query: 570 SGTILVNGK---VASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKV 626
+G +L++G +A +R +G V QD+++ N ++ +N+ A
Sbjct: 57 NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL-NRSIIDNISL------------ANPG 103
Query: 627 LVVERVIESLGLQHIRD----------SLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLI 676
+ VE+VI + L D ++VG + G+SGGQR+R+ + +V P +LI
Sbjct: 104 MSVEKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILI 162
Query: 677 LDEPTSGLDSSSSQXXXXXXXXXXXXGVNICTVVHQPSYALFRMFDDLILLAKGGVI 733
DE TS LD S+ G + + H+ S + D +I++ KG ++
Sbjct: 163 FDEATSALD-YESEHVIMRNMHKICKGRTVIIIAHRLSTV--KNADRIIVMEKGKIV 216
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 112/237 (47%), Gaps = 36/237 (15%)
Query: 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGR--VPGCIM 569
++ F+++ K + ++ ++ + G V ++G SG+GK+T L+ L R +P
Sbjct: 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKST-LTKLIQRFYIP---E 62
Query: 570 SGTILVNGK---VASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKV 626
+G +L++G +A +R +G V QD+++ N ++ +N+ A
Sbjct: 63 NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL-NRSIIDNISL------------ANPG 109
Query: 627 LVVERVIESLGLQHIRD----------SLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLI 676
+ VE+VI + L D ++VG + G+SGGQR+R+ + +V P +LI
Sbjct: 110 MSVEKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILI 168
Query: 677 LDEPTSGLDSSSSQXXXXXXXXXXXXGVNICTVVHQPSYALFRMFDDLILLAKGGVI 733
DE TS LD S+ G + + H+ S + D +I++ KG ++
Sbjct: 169 FDEATSALD-YESEHVIMRNMHKICKGRTVIIIAHRLSTV--KNADRIIVMEKGKIV 222
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 78/153 (50%), Gaps = 11/153 (7%)
Query: 542 VSAVMGPSGAGKTTFLSALKGRVP--GCIMSGTILVNGK---VASIQSYKRI----IGFV 592
V+A++G S +GK+T + A+ +P G I+SG +L GK + ++I I V
Sbjct: 36 VTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRKIRWKEIALV 95
Query: 593 PQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKR 652
PQ N T++ F + + A + ++E+ E L + + V
Sbjct: 96 PQAAQQSLNPTMKVIEHF--KDTVEAHGVRWSHSELIEKASEKLRMVRLNPEAVLNSYPL 153
Query: 653 GISGGQRKRVNVGLEMVMEPSLLILDEPTSGLD 685
+SGG ++RV + L ++++P +LILDEPTS LD
Sbjct: 154 QLSGGMKQRVLIALALLLDPVVLILDEPTSALD 186
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 57.4 bits (137), Expect = 4e-08, Method: Composition-based stats.
Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 20/164 (12%)
Query: 528 HLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKR 587
H ++ + K+ G++ ++G +GAGKTT LSA+ G V G I+ NG+ + +
Sbjct: 20 HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFNGQDITNKPAHV 77
Query: 588 I----IGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVE---RVIESLGLQH 640
I I VP+ + LTV ENL A R + K + + R+ E L
Sbjct: 78 INRXGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFPRLKERL---- 133
Query: 641 IRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGL 684
L GT +SGG+++ + +G + P LL DEP+ GL
Sbjct: 134 --KQLGGT-----LSGGEQQXLAIGRALXSRPKLLXXDEPSLGL 170
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 112/237 (47%), Gaps = 36/237 (15%)
Query: 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGR--VPGCIM 569
++ F+++ K + ++ ++ + G V ++G +G+GK+T L+ L R +P
Sbjct: 3 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKST-LTKLIQRFYIP---E 58
Query: 570 SGTILVNGK---VASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKV 626
+G +L++G +A +R +G V QD+++ N ++ +N+ A
Sbjct: 59 NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL-NRSIIDNISL------------ANPG 105
Query: 627 LVVERVIESLGLQHIRD----------SLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLI 676
+ VE+VI + L D ++VG + G+SGGQR+R+ + +V P +LI
Sbjct: 106 MSVEKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILI 164
Query: 677 LDEPTSGLDSSSSQXXXXXXXXXXXXGVNICTVVHQPSYALFRMFDDLILLAKGGVI 733
DE TS LD S+ G + + H+ S + D +I++ KG ++
Sbjct: 165 FDEATSALD-YESEHVIMRNMHKICKGRTVIIIAHRLSTV--KNADRIIVMEKGKIV 218
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 93/186 (50%), Gaps = 21/186 (11%)
Query: 513 VAFKDLTITLKGK-NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSG 571
V F+D++ N +++ +T L PG+V+A++GP+G+GK+T + L+ G
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT--GG 74
Query: 572 TILVNGK--VASIQSYKRI-IGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLV 628
+L++G+ V Y + V Q+ ++ G + EN+ + P E++
Sbjct: 75 KVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGR-SFRENIAYGL-----TRTPTMEEITA 128
Query: 629 VERVIES------LGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTS 682
V +ES G D+ VG + +SGGQR+ V + ++ +P LLILD+ TS
Sbjct: 129 V--AMESGAHDFISGFPQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILDQATS 185
Query: 683 GLDSSS 688
LD+ +
Sbjct: 186 ALDAGN 191
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 57.0 bits (136), Expect = 5e-08, Method: Composition-based stats.
Identities = 55/222 (24%), Positives = 97/222 (43%), Gaps = 15/222 (6%)
Query: 527 KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYK 586
K + +V+ ++ G V G +G+GK+T L + G + SG +L +G+ +
Sbjct: 22 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGERKKGYEIR 79
Query: 587 RIIGFV---PQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRD 643
R IG P+D E ++ + P + V +V++ +E +GL D
Sbjct: 80 RNIGIAFQYPEDQFF------AERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDF--D 131
Query: 644 SLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQXXXXXXXXXXXXG 703
S V +SGG+++RV + +V EP +LILDEP GLD G
Sbjct: 132 SFKDRV-PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLG 190
Query: 704 VNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVEEY 745
+ + H + D +++L KG + ++ +E+Y
Sbjct: 191 KTVILISHDIE-TVINHVDRVVVLEKGKKVFDGTRMEFLEKY 231
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 57.0 bits (136), Expect = 5e-08, Method: Composition-based stats.
Identities = 55/222 (24%), Positives = 97/222 (43%), Gaps = 15/222 (6%)
Query: 527 KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYK 586
K + +V+ ++ G V G +G+GK+T L + G + SG +L +G+ +
Sbjct: 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGERKKGYEIR 77
Query: 587 RIIGFV---PQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRD 643
R IG P+D E ++ + P + V +V++ +E +GL D
Sbjct: 78 RNIGIAFQYPEDQFF------AERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDF--D 129
Query: 644 SLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQXXXXXXXXXXXXG 703
S V +SGG+++RV + +V EP +LILDEP GLD G
Sbjct: 130 SFKDRV-PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLG 188
Query: 704 VNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVEEY 745
+ + H + D +++L KG + ++ +E+Y
Sbjct: 189 KTVILISHDIE-TVINHVDRVVVLEKGKKVFDGTRMEFLEKY 229
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 95/194 (48%), Gaps = 33/194 (17%)
Query: 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGR--VPGCIM 569
++ F+++ K + ++ ++ + G V ++G SG+GK+T L+ L R +P
Sbjct: 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKST-LTKLIQRFYIP---E 56
Query: 570 SGTILVNGK---VASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKV 626
+G +L++G +A +R +G V QD+++ N ++ +N+ A
Sbjct: 57 NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL-NRSIIDNISL------------ANPG 103
Query: 627 LVVERVIESLGLQHIRD----------SLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLI 676
+ VE+VI + L D ++VG + G+SGGQR+R+ + +V P +LI
Sbjct: 104 MSVEKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILI 162
Query: 677 LDEPTSGLDSSSSQ 690
DE TS LD S
Sbjct: 163 FDEATSALDYESEH 176
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 95/194 (48%), Gaps = 33/194 (17%)
Query: 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGR--VPGCIM 569
++ F+++ K + ++ ++ + G V ++G SG+GK+T L+ L R +P
Sbjct: 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKST-LTKLIQRFYIP---E 62
Query: 570 SGTILVNGK---VASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKV 626
+G +L++G +A +R +G V QD+++ N ++ +N+ A
Sbjct: 63 NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL-NRSIIDNISL------------ANPG 109
Query: 627 LVVERVIESLGLQHIRD----------SLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLI 676
+ VE+VI + L D ++VG + G+SGGQR+R+ + +V P +LI
Sbjct: 110 MSVEKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILI 168
Query: 677 LDEPTSGLDSSSSQ 690
DE TS LD S
Sbjct: 169 FDEATSALDYESEH 182
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 112/237 (47%), Gaps = 36/237 (15%)
Query: 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGR--VPGCIM 569
++ F+++ K + ++ ++ + G V ++G SG+GK+T L+ L R +P
Sbjct: 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKST-LTKLIQRFYIP---E 62
Query: 570 SGTILVNGK---VASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKV 626
+G +L++G +A +R +G V QD+++ N ++ +N+ A
Sbjct: 63 NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL-NRSIIDNISL------------ANPG 109
Query: 627 LVVERVIESLGLQHIRD----------SLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLI 676
+ VE+VI + L D ++VG + G+SGGQR+R+ + +V P +LI
Sbjct: 110 MSVEKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILI 168
Query: 677 LDEPTSGLDSSSSQXXXXXXXXXXXXGVNICTVVHQPSYALFRMFDDLILLAKGGVI 733
D+ TS LD S+ G + + H+ S + D +I++ KG ++
Sbjct: 169 FDQATSALD-YESEHVIMRNMHKICKGRTVIIIAHRLSTV--KNADRIIVMEKGKIV 222
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 56.6 bits (135), Expect = 8e-08, Method: Composition-based stats.
Identities = 61/244 (25%), Positives = 105/244 (43%), Gaps = 31/244 (12%)
Query: 508 RPTIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTT-------FLSAL 560
R T+E+ + + G+ K L V+ + G V+ ++GP+G+GK+T FL A
Sbjct: 2 RDTMEILRTENIVKYFGEFKAL-DGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKAD 60
Query: 561 KGRVPGCIMSGTILVNGKVASIQSYKRIIGF-VPQDDIVHGNLTVEENLWFSARCRLSAD 619
+GRV + N + A + Y + F PQ +TV ENL +
Sbjct: 61 EGRV---YFENKDITNKEPAELYHYGIVRTFQTPQP---LKEMTVLENLLIGEINPGESP 114
Query: 620 L---------PKAEKVLVVE-RVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMV 669
L PK E+++ +++E L L H+ D G +SGGQ K V +G ++
Sbjct: 115 LNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALM 169
Query: 670 MEPSLLILDEPTSGLDSSSSQXXXXXXXXXXXXGVNICTVVHQPSYALFRMFDDLILLAK 729
P ++++DEP +G+ + G+ + H+ L D L ++
Sbjct: 170 TNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVL-NYIDHLYVMFN 228
Query: 730 GGVI 733
G +I
Sbjct: 229 GQII 232
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 92/186 (49%), Gaps = 21/186 (11%)
Query: 513 VAFKDLTITLKGK-NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSG 571
V F+D++ N +++ +T L PG+V+A++GP+G+GK+T + L+ G
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT--GG 74
Query: 572 TILVNGK--VASIQSYKRI-IGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLV 628
+L++G+ V Y + V Q+ ++ G + EN+ + P E++
Sbjct: 75 KVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGR-SFRENIAYGL-----TRTPTMEEITA 128
Query: 629 VERVIES------LGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTS 682
V +ES G D+ VG + +SGGQR+ V + ++ +P LLILD TS
Sbjct: 129 V--AMESGAHDFISGFPQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILDNATS 185
Query: 683 GLDSSS 688
LD+ +
Sbjct: 186 ALDAGN 191
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 85/158 (53%), Gaps = 22/158 (13%)
Query: 540 GRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRI-----IGFVPQ 594
G V+A++GPSG+GK+T LS L SGTI ++G I+ + IG V Q
Sbjct: 370 GSVTALVGPSGSGKSTVLSLLLRLYDPA--SGTISLDGH--DIRQLNPVWLRSKIGTVSQ 425
Query: 595 DDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIE-SLGLQHIRDSLVG---TVE 650
+ I+ + ++ EN+ + A D P + ++RV E + + IR+ G V
Sbjct: 426 EPILF-SCSIAENIAYGA------DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVG 478
Query: 651 KRGI--SGGQRKRVNVGLEMVMEPSLLILDEPTSGLDS 686
++G+ SGGQ++R+ + ++ P +L+LDE TS LD+
Sbjct: 479 EKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDA 516
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 39/207 (18%)
Query: 492 TFSGVISMAN-EIEIRKRPTIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSG 550
+F G + N RP + + F+D ++++ G V+A++GPSG
Sbjct: 368 SFQGALEFKNVHFAYPARPEVPI-FQDFSLSIPS---------------GSVTALVGPSG 411
Query: 551 AGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRI-----IGFVPQDDIVHGNLTVE 605
+GK+T LS L SGTI ++G I+ + IG V Q+ I+ + ++
Sbjct: 412 SGKSTVLSLLLRLYDPA--SGTISLDGH--DIRQLNPVWLRSKIGTVSQEPILF-SCSIA 466
Query: 606 ENLWFSARCRLSADLPKAEKVLVVERVIE-SLGLQHIRDSLVG---TVEKRGI--SGGQR 659
EN+ + A D P + ++RV E + + IR+ G V ++G+ SGGQ+
Sbjct: 467 ENIAYGA------DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQK 520
Query: 660 KRVNVGLEMVMEPSLLILDEPTSGLDS 686
+R+ + ++ P +L+LDE TS LD+
Sbjct: 521 QRIAIARALLKNPKILLLDEATSALDA 547
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 60/244 (24%), Positives = 106/244 (43%), Gaps = 31/244 (12%)
Query: 508 RPTIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTT-------FLSAL 560
R T+E+ + + G+ K L V+ ++ G V+ ++GP+G+GK+T FL A
Sbjct: 2 RDTMEILRTENIVKYFGEFKAL-DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD 60
Query: 561 KGRVPGCIMSGTILVNGKVASIQSYKRIIGF-VPQDDIVHGNLTVEENLWFSARCRLSAD 619
+GRV + N + A + Y + F PQ +TV ENL +
Sbjct: 61 EGRV---YFENKDITNKEPAELYHYGIVRTFQTPQP---LKEMTVLENLLIGEINPGESP 114
Query: 620 L---------PKAEKVLVVE-RVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMV 669
L PK E+++ +++E L L H+ D G +SGGQ K V +G ++
Sbjct: 115 LNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALM 169
Query: 670 MEPSLLILDEPTSGLDSSSSQXXXXXXXXXXXXGVNICTVVHQPSYALFRMFDDLILLAK 729
P ++++D+P +G+ + G+ + H+ L D L ++
Sbjct: 170 TNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVL-NYIDHLYVMFN 228
Query: 730 GGVI 733
G +I
Sbjct: 229 GQII 232
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 92/196 (46%), Gaps = 33/196 (16%)
Query: 513 VAFKDLTITLKGKNK--HLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCI-- 568
+ K++T T K + + +++V + G ++MGPSG+GK+T L+ + GC+
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-----GCLDK 56
Query: 569 -MSGTILVNG---------KVASIQSYKRIIGFVPQDDIVHGNLTVEEN----LWFSARC 614
G + ++ ++ I+ K IGFV Q + LT EN L F R
Sbjct: 57 PTEGEVYIDNIKTNDLDDDELTKIRRDK--IGFVFQQFNLIPLLTALENVELPLIFKYRG 114
Query: 615 RLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSL 674
+S + + +R +E L + + + + +SGGQ++RV + + P +
Sbjct: 115 AMSGEERR-------KRALECLKMAELEERFANH-KPNQLSGGQQQRVAIARALANNPPI 166
Query: 675 LILDEPTSGLDSSSSQ 690
++ D+PT LDS + +
Sbjct: 167 ILADQPTGALDSKTGE 182
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 95/188 (50%), Gaps = 23/188 (12%)
Query: 509 PTIE--VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSAL------ 560
P +E V+F+++ ++ V + PG + AV+G +G+GK+T ++ +
Sbjct: 336 PNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP 395
Query: 561 -KGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSAD 619
+GRV ++ + ++ + I VPQ+ ++ T++ENL + +
Sbjct: 396 ERGRVE------VDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGREDATDDE 448
Query: 620 LPKAEKVLVVERVIESLGLQHIRDSLVGTVEK--RGISGGQRKRVNVGLEMVMEPSLLIL 677
+ +A K+ + I SL + DS VE+ R SGGQ++R+++ +V +P +LIL
Sbjct: 449 IVEAAKIAQIHDFIISLPEGY--DS---RVERGGRNFSGGQKQRLSIARALVKKPKVLIL 503
Query: 678 DEPTSGLD 685
D+ TS +D
Sbjct: 504 DDCTSSVD 511
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 54.3 bits (129), Expect = 4e-07, Method: Composition-based stats.
Identities = 50/168 (29%), Positives = 73/168 (43%), Gaps = 38/168 (22%)
Query: 529 LMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKG-RVPGCIMSGTILVNGKVASIQSYKR 587
L + + L+ G + AV+G +G GK+T L L G P + GK+ QS
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP---------IQGKIEVYQS--- 67
Query: 588 IIGFVPQD----------DIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLG 637
IGFVPQ DIV + N + PK+ V + ++ L
Sbjct: 68 -IGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAK---------PKSHDYQVAMQALDYLN 117
Query: 638 LQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLD 685
L H+ E +SGGQR+ + + + E L++LDEPTS LD
Sbjct: 118 LTHLAKR-----EFTSLSGGQRQLILIARAIASECKLILLDEPTSALD 160
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 49/179 (27%), Positives = 92/179 (51%), Gaps = 22/179 (12%)
Query: 513 VAFKDLTITLKGK--NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMS 570
+ K++ ITL GK + + ++ +++ +V ++GP+G+GKTT L A+ G +P S
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVNGEKV-IILGPNGSGKTTLLRAISGLLP---YS 57
Query: 571 GTILVNG-KVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVV 629
G I +NG +V I++Y R +P+ + +TV + ++ L +L ++ L +
Sbjct: 58 GNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVNDIVY------LYEELKGLDRDLFL 109
Query: 630 ERVIE-SLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSS 687
E + LG + +R L +S GQ V L + +P ++ LDEP +D++
Sbjct: 110 EMLKALKLGEEILRRKLY------KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAA 162
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 114/254 (44%), Gaps = 51/254 (20%)
Query: 530 MRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCI------MSGTILVNGKV---- 579
+ +V+ + G++ V+G SGAGK+T + C+ G++LV+G+
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIR--------CVNLLERPTEGSVLVDGQELTTL 72
Query: 580 --ASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSAD-LPKAEKVLVVERVIESL 636
+ + +R IG + Q H NL ++ + L D PK E V RV E L
Sbjct: 73 SESELTKARRQIGMIFQ----HFNLLSSRTVFGNVALPLELDNTPKDE---VKRRVTELL 125
Query: 637 GLQHIRDSLVGTVEKR-----GISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQX 691
SLVG +K +SGGQ++RV + + P +L+ DE TS LD ++++
Sbjct: 126 -------SLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178
Query: 692 XXXXXX-XXXXXGVNICTVVHQPSYALFRMFDDLILLAKGGVI-------VYHGPVKKVE 743
G+ I + H+ + R+ D + +++ G +I V+ P +
Sbjct: 179 ILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLA 237
Query: 744 EYF--ASLGITVPD 755
+ F ++L + +P+
Sbjct: 238 QKFIQSTLHLDIPE 251
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 98/220 (44%), Gaps = 24/220 (10%)
Query: 513 VAFKDLTITLKGKNK--HLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSAL-------KGR 563
V K++T T K + + +++V + G ++MGPSG+GK+T L+ + +G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 564 VPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEEN----LWFSARCRLSAD 619
V + L + ++ I+ K IGFV Q + LT EN L F R +S +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDK--IGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE 119
Query: 620 LPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDE 679
+ +R +E L + + + + +SGGQ++RV + + P +++ D+
Sbjct: 120 ERR-------KRALECLKMAELEERFANH-KPNQLSGGQQQRVAIARALANNPPIILADQ 171
Query: 680 PTSGLDSSSSQX-XXXXXXXXXXXGVNICTVVHQPSYALF 718
PT LDS + + G + V H + A F
Sbjct: 172 PTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARF 211
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 108/252 (42%), Gaps = 34/252 (13%)
Query: 525 KNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKG-RVPGCIMSGTILVNGKV---- 579
+N ++ ++ L PG + ++G SG GKTT L L G P SG I ++GK
Sbjct: 15 QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSK 71
Query: 580 -ASIQSYKRIIGFVPQDDIVHGNLTVEENLWF---SARCRLSADLPKAEKVLVVERVIES 635
++ +R +G++ Q+ ++ +LTV N+ + + + R + + + E +L + + E
Sbjct: 72 NTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISE- 130
Query: 636 LGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSS-SSQXXXX 694
L G +SGGQ++R + + +P L++LDEP S LD Q
Sbjct: 131 ---------LAGRYPHE-LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIRED 180
Query: 695 XXXXXXXXGVNICTVVHQPSYALFRMFDDLILLAKGGVI--------VYHGPVKKVEEYF 746
G + V H AL + D I + K G I +Y P F
Sbjct: 181 MIAALRANGKSAVFVSHDREEAL--QYADRIAVMKQGRILQTASPHELYRQPADLDAALF 238
Query: 747 ASLGITVPDRIN 758
GI P +N
Sbjct: 239 IGEGIVFPAALN 250
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 40/179 (22%)
Query: 530 MRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCI------MSGTILVNGKV---- 579
+ +V+ + G++ V+G SGAGK+T + C+ G++LV+G+
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIR--------CVNLLERPTEGSVLVDGQELTTL 95
Query: 580 --ASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSAD-LPKAEKVLVVERVIESL 636
+ + +R IG + Q H NL ++ + L D PK E V RV E L
Sbjct: 96 SESELTKARRQIGMIFQ----HFNLLSSRTVFGNVALPLELDNTPKDE---VKRRVTELL 148
Query: 637 GLQHIRDSLVGTVEKR-----GISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQ 690
SLVG +K +SGGQ++RV + + P +L+ D+ TS LD ++++
Sbjct: 149 -------SLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTR 200
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 114/248 (45%), Gaps = 39/248 (15%)
Query: 530 MRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKV------ASIQ 583
+ +V+ + G++ V+G SGAGK+T + + + G++LV+G+ + +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVN--LLERPTEGSVLVDGQELTTLSESELT 101
Query: 584 SYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSAD-LPKAEKVLVVERVIESLGLQHIR 642
+R IG + Q H NL ++ + L D PK E V RV E L
Sbjct: 102 KARRQIGXIFQ----HFNLLSSRTVFGNVALPLELDNTPKDE---VKRRVTELL------ 148
Query: 643 DSLVGTVEKR-----GISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQX-XXXXX 696
SLVG +K +SGGQ++RV + + P +L+ D+ TS LD ++++
Sbjct: 149 -SLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLK 207
Query: 697 XXXXXXGVNICTVVHQPSYALFRMFDDLILLAKGGVI-------VYHGPVKKVEEYF--A 747
G+ I + H+ + R+ D + +++ G +I V+ P + + F +
Sbjct: 208 DINRRLGLTILLITHEXD-VVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQS 266
Query: 748 SLGITVPD 755
+L + +P+
Sbjct: 267 TLHLDIPE 274
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 45/184 (24%)
Query: 525 KNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVA---- 580
+ K +++ ++ +++ G + G +GAGKTT L+ L P SGT+ + GK
Sbjct: 32 QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA--TSGTVNLFGKXPGKVG 89
Query: 581 -SIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVL--VVERVIESLG 637
S ++ ++ IGFV L + E+V+ V+ +S+G
Sbjct: 90 YSAETVRQHIGFVSHS--------------------LLEKFQEGERVIDVVISGAFKSIG 129
Query: 638 L-QHIRDS----------LVGTVEKRG-----ISGGQRKRVNVGLEMVMEPSLLILDEPT 681
+ Q I D LVG K +S G+++RV + + +P +LILDEP
Sbjct: 130 VYQDIDDEIRNEAHQLLKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPA 189
Query: 682 SGLD 685
+GLD
Sbjct: 190 AGLD 193
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 91/186 (48%), Gaps = 21/186 (11%)
Query: 513 VAFKDLTITLKGK-NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSG 571
V F+D++ N +++ +T L PG+V+A++GP+G+GK+T + L+ G
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT--GG 74
Query: 572 TILVNGK--VASIQSYKRI-IGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLV 628
+L++G+ V Y + V Q+ ++ G + EN+ + P E++
Sbjct: 75 KVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGR-SFRENIAYGL-----TRTPTMEEITA 128
Query: 629 VERVIES------LGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTS 682
V +ES G D+ VG + ++ GQR+ V + ++ +P LLILD TS
Sbjct: 129 V--AMESGAHDFISGFPQGYDTEVGETGNQ-LAVGQRQAVALARALIRKPRLLILDNATS 185
Query: 683 GLDSSS 688
LD+ +
Sbjct: 186 ALDAGN 191
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 88/188 (46%), Gaps = 23/188 (12%)
Query: 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSG 571
++ KDLT ++ +++ +SPG+ ++G +G+GK+T LSA + G
Sbjct: 19 QMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEG 75
Query: 572 TILVNG---KVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLV 628
I ++G +++ +++ G +PQ + FS R + D A
Sbjct: 76 EIQIDGVSWDSITLEQWRKAFGVIPQKVFI-----------FSGTFRKNLDPNAAHSDQE 124
Query: 629 VERVIESLGLQHIRDSLVGTVEKRGISG------GQRKRVNVGLEMVMEPSLLILDEPTS 682
+ +V + +GL+ + + G ++ + G G ++ + + ++ + +L+LDEP++
Sbjct: 125 IWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSA 184
Query: 683 GLDSSSSQ 690
LD + Q
Sbjct: 185 HLDPVTYQ 192
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 89/196 (45%), Gaps = 33/196 (16%)
Query: 513 VAFKDLTITLKGKNK--HLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCI-- 568
+ K++T T K + + +++V + G ++ GPSG+GK+T L+ + GC+
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNII-----GCLDK 56
Query: 569 -MSGTILVNG---------KVASIQSYKRIIGFVPQDDIVHGNLTVEEN----LWFSARC 614
G + ++ ++ I+ K IGFV Q + LT EN L F R
Sbjct: 57 PTEGEVYIDNIKTNDLDDDELTKIRRDK--IGFVFQQFNLIPLLTALENVELPLIFKYRG 114
Query: 615 RLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSL 674
S + + +R +E L + + + +SGGQ++RV + + P +
Sbjct: 115 AXSGEERR-------KRALECLKXAELEERFANH-KPNQLSGGQQQRVAIARALANNPPI 166
Query: 675 LILDEPTSGLDSSSSQ 690
++ DEPT LDS + +
Sbjct: 167 ILADEPTGALDSKTGE 182
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 50.1 bits (118), Expect = 7e-06, Method: Composition-based stats.
Identities = 44/180 (24%), Positives = 82/180 (45%), Gaps = 20/180 (11%)
Query: 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSG 571
++ +DL++ G +K ++ +T + G V GP+G GKTT L + + + G
Sbjct: 10 KLEIRDLSV---GYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKG 64
Query: 572 TILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVER 631
I+ NG I K I F+P++ IV ++VE+ + A L +++
Sbjct: 65 EIIYNG--VPITKVKGKIFFLPEEIIVPRKISVED--YLKAVASLYGVKVNKNEIMDALE 120
Query: 632 VIESLGLQHIRDSLVGTVEKRG-ISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQ 690
+E L L+ +K G +S G +RV + +++ + +LD+P +D S
Sbjct: 121 SVEVLDLK----------KKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKH 170
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 23/179 (12%)
Query: 510 TIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIM 569
T EV +++T + +++ + K+ G++ AV G +GAGKT+ L + G +
Sbjct: 16 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS-- 73
Query: 570 SGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSA--RCRLSADLPK-AEKV 626
G I +G+++ + I+ +++I+ G ++ +E + S C+L D+ K AEK
Sbjct: 74 EGKIKHSGRISFCSQFSWIMPGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKD 132
Query: 627 LVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLD 685
+V LG I +SGGQR R+++ + + L +LD P LD
Sbjct: 133 NIV------LGEGGIT-----------LSGGQRARISLARAVYKDADLYLLDSPFGYLD 174
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 22/152 (14%)
Query: 534 TGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVP 593
G+ G + ++GP+G GKTTF L G + S+ K+I+ + P
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVGE-----------ITADEGSVTPEKQILSYKP 336
Query: 594 QDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRG 653
Q + + TV++ L +++ LS E V + L L + +S V
Sbjct: 337 QRIFPNYDGTVQQYLENASKDALSTS------SWFFEEVTKRLNLHRLLESNVND----- 385
Query: 654 ISGGQRKRVNVGLEMVMEPSLLILDEPTSGLD 685
+SGG+ +++ + + E L +LD+P+S LD
Sbjct: 386 LSGGELQKLYIAATLAKEADLYVLDQPSSYLD 417
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 24/156 (15%)
Query: 542 VSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIG----------F 591
+ V+G +G GKTT L L G + N KV + KR G +
Sbjct: 27 ILGVLGKNGVGKTTVLKILAGEIIPNFGDP----NSKVGKDEVLKRFRGKEIYNYFKELY 82
Query: 592 VPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHI--RDSLVGTV 649
+ IVH VE F + ++ L K ++ + V E L + ++ +D+ +
Sbjct: 83 SNELKIVHKIQYVEYASKF-LKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANI--- 138
Query: 650 EKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLD 685
+SGG +R+ V ++ E + I D+P+S LD
Sbjct: 139 ----LSGGGLQRLLVAASLLREADVYIFDQPSSYLD 170
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 23/179 (12%)
Query: 510 TIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIM 569
T EV +++T + +++ + K+ G++ AV G +GAGKT+ L + G +
Sbjct: 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS-- 61
Query: 570 SGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSA--RCRLSADLPK-AEKV 626
G I +G+++ + I+ +++I+ G ++ +E + S C+L D+ K AEK
Sbjct: 62 EGKIKHSGRISFCSQFSWIMPGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKD 120
Query: 627 LVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLD 685
+V LG I +SGGQR R+++ + + L +LD P LD
Sbjct: 121 NIV------LGEGGIT-----------LSGGQRARISLARAVYKDADLYLLDSPFGYLD 162
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 23/160 (14%)
Query: 529 LMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRI 588
+++ + K+ G++ AV G +GAGKT+ L + G + G I +G+++ + I
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSGRISFCSQFSWI 110
Query: 589 IGFVPQDDIVHGNLTVEENLWFSA--RCRLSADLPK-AEKVLVVERVIESLGLQHIRDSL 645
+ +++I+ G ++ +E + S C+L D+ K AEK +V LG I
Sbjct: 111 MPGTIKENIIAG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIV------LGEGGIT--- 160
Query: 646 VGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLD 685
+SGGQR R+++ + + L +LD P LD
Sbjct: 161 --------LSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 24/179 (13%)
Query: 510 TIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIM 569
T EV +++T + +++ + K+ G++ AV G +GAGKT+ L + G +
Sbjct: 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS-- 61
Query: 570 SGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSA--RCRLSADLPK-AEKV 626
G I +G+++ + I+ +++I+ ++ +E + S C+L D+ K AEK
Sbjct: 62 EGKIKHSGRISFCSQFSWIMPGTIKENII--GVSYDEYRYRSVIKACQLEEDISKFAEKD 119
Query: 627 LVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLD 685
+V LG I +SGGQR R+++ + + L +LD P LD
Sbjct: 120 NIV------LGEGGIT-----------LSGGQRARISLARAVYKDADLYLLDSPFGYLD 161
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 94/233 (40%), Gaps = 32/233 (13%)
Query: 535 GKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQ 594
G++ G V ++GP+G GKTTF+ L G + T GKV + + + PQ
Sbjct: 377 GEIRKGEVIGIVGPNGIGKTTFVKMLAG-----VEEPT---EGKV----EWDLTVAYKPQ 424
Query: 595 DDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGI 654
TV E L +L+++ K E +++ LG+ + D V +
Sbjct: 425 YIKAEYEGTVYELLSKIDSSKLNSNFYKTE-------LLKPLGIIDLYDRNV-----EDL 472
Query: 655 SGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQXXXXXXXXXXXXGVNICTVVHQPS 714
SGG+ +RV + ++ + + +LDEP++ LD VV
Sbjct: 473 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 532
Query: 715 YALFRMFDDLILLA-----KGGVIVYHGPVKKVEEYFASLGITV---PDRINP 759
+ + D LI+ G + G + + + AS+GIT PD P
Sbjct: 533 LMIDYVSDRLIVFEGEPGRHGRALPPMGMREGMNRFLASVGITFRRDPDSGRP 585
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 94/233 (40%), Gaps = 32/233 (13%)
Query: 535 GKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQ 594
G++ G V ++GP+G GKTTF+ L G + T GKV + + + PQ
Sbjct: 363 GEIRKGEVIGIVGPNGIGKTTFVKMLAG-----VEEPT---EGKV----EWDLTVAYKPQ 410
Query: 595 DDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGI 654
TV E L +L+++ K E +++ LG+ + D V +
Sbjct: 411 YIKAEYEGTVYELLSKIDSSKLNSNFYKTE-------LLKPLGIIDLYDRNV-----EDL 458
Query: 655 SGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQXXXXXXXXXXXXGVNICTVVHQPS 714
SGG+ +RV + ++ + + +LDEP++ LD VV
Sbjct: 459 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 518
Query: 715 YALFRMFDDLILLA-----KGGVIVYHGPVKKVEEYFASLGITV---PDRINP 759
+ + D LI+ G + G + + + AS+GIT PD P
Sbjct: 519 LMIDYVSDRLIVFEGEPGRHGRALPPMGMREGMNRFLASVGITFRRDPDSGRP 571
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 46.6 bits (109), Expect = 9e-05, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 14/103 (13%)
Query: 628 VVERVIESLGL--QHIRDSLVGTVEKRGI------------SGGQRKRVNVGLEMVMEPS 673
V+E I+ LGL R+ + + K GI SGGQ++RV++ + MEP
Sbjct: 114 VMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPD 173
Query: 674 LLILDEPTSGLDSSSSQXXXXXXXXXXXXGVNICTVVHQPSYA 716
+L+ DEPTS LD G + V H+ +A
Sbjct: 174 VLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFA 216
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 24/151 (15%)
Query: 535 GKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQ 594
G++ G V ++GP+G GKTTF+ L G + T GK+ + + + PQ
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTFVKXLAG-----VEEPT---EGKI----EWDLTVAYKPQ 354
Query: 595 DDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGI 654
TV E L +L+++ K E +++ LG+ + D V +
Sbjct: 355 YIKADYEGTVYELLSKIDASKLNSNFYKTE-------LLKPLGIIDLYDREVNE-----L 402
Query: 655 SGGQRKRVNVGLEMVMEPSLLILDEPTSGLD 685
SGG+ +RV + ++ + + +LDEP++ LD
Sbjct: 403 SGGELQRVAIAATLLRDADIYLLDEPSAYLD 433
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 87/216 (40%), Gaps = 44/216 (20%)
Query: 540 GRVSAVMGPSGAGKTTFLSALKGR-VPGCI-----MSGTI--------------LVNGKV 579
G V ++GP+G GK+T + L G+ +P G I L NG++
Sbjct: 47 GXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEI 106
Query: 580 ASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ 639
+ + + +P+ + + ++ L KA++ +E V+++L L+
Sbjct: 107 RPVVK-PQYVDLIPK----------------AVKGKVIELLKKADETGKLEEVVKALELE 149
Query: 640 HIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQXXXXXXXXX 699
++ + E + +SGG+ +RV + ++ + DEP+S LD
Sbjct: 150 NVLER-----EIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRL 204
Query: 700 XXXGVNICTVVHQPSYALFRMFDDLILLAKGGVIVY 735
G ++ V H A+ D+I + G VY
Sbjct: 205 SEEGKSVLVVEH--DLAVLDYLSDIIHVVYGEPGVY 238
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 79/174 (45%), Gaps = 17/174 (9%)
Query: 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGT 572
+ ++ T T + + +T + G + AV+G G GK++ LSAL + + G
Sbjct: 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGH 61
Query: 573 ILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERV 632
+ + G VA +VPQ + N ++ EN+ F C+L + P V+ +
Sbjct: 62 VAIKGSVA----------YVPQQAWIQ-NDSLRENILFG--CQL--EEPYYRSVIQACAL 106
Query: 633 IESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDS 686
+ L + D + +SGGQ++RV++ + + + D+P S +D+
Sbjct: 107 LPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 160
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 76/160 (47%), Gaps = 24/160 (15%)
Query: 529 LMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRI 588
+++ + K+ G++ AV G +GAGKT+ L + G + G I +G+++ I
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSGRISFCSQNSWI 110
Query: 589 IGFVPQDDIVHGNLTVEENLWFSA--RCRLSADLPK-AEKVLVVERVIESLGLQHIRDSL 645
+ +++I+ ++ +E + S C+L D+ K AEK +V LG I
Sbjct: 111 MPGTIKENII--GVSYDEYRYRSVIKACQLEEDISKFAEKDNIV------LGEGGIT--- 159
Query: 646 VGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLD 685
+SGGQR R+++ + + L +LD P LD
Sbjct: 160 --------LSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 76/160 (47%), Gaps = 24/160 (15%)
Query: 529 LMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRI 588
+++ + K+ G++ AV G +GAGKT+ L + G + G I +G+++ I
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSGRISFCSQNSWI 110
Query: 589 IGFVPQDDIVHGNLTVEENLWFSA--RCRLSADLPK-AEKVLVVERVIESLGLQHIRDSL 645
+ +++I+ ++ +E + S C+L D+ K AEK +V LG I
Sbjct: 111 MPGTIKENII--GVSYDEYRYRSVIKACQLEEDISKFAEKDNIV------LGEGGIT--- 159
Query: 646 VGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLD 685
+SGGQR R+++ + + L +LD P LD
Sbjct: 160 --------LSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 529 LMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRI 588
+++++ + G + A+ G +G+GKT+ L + G + G I +G+V+ + I
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSGRVSFCSQFSWI 110
Query: 589 IGFVPQDDIVHGNLTVEENLWFSA--RCRLSADLPKAEKVLVVERVIESLGLQHIRDSLV 646
+ +++I+ G ++ +E + S C+L D+ K + +D+ V
Sbjct: 111 MPGTIKENIIFG-VSYDEYRYKSVVKACQLQQDITKFAE----------------QDNTV 153
Query: 647 GTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLD 685
+SGGQR R+++ + + L +LD P LD
Sbjct: 154 LGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 529 LMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRI 588
+++++ + G + A+ G +G+GKT+ L + G + G I +G+V+ + I
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSGRVSFCSQFSWI 110
Query: 589 IGFVPQDDIVHGNLTVEENLWFSA--RCRLSADLPKAEKVLVVERVIESLGLQHIRDSLV 646
+ +++I+ G ++ +E + S C+L D+ K + +D+ V
Sbjct: 111 MPGTIKENIIRG-VSYDEYRYKSVVKACQLQQDITKFAE----------------QDNTV 153
Query: 647 GTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLD 685
+SGGQR R+++ + + L +LD P LD
Sbjct: 154 LGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 529 LMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRI 588
+++++ + G + A+ G +G+GKT+ L + G + G I +G+V+ + I
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSGRVSFCSQFSWI 110
Query: 589 IGFVPQDDIVHGNLTVEENLWFSA--RCRLSADLPKAEKVLVVERVIESLGLQHIRDSLV 646
+ +++I+ G ++ +E + S C+L D+ K + +D+ V
Sbjct: 111 MPGTIKENIIFG-VSYDEYRYKSVVKACQLQQDITKFAE----------------QDNTV 153
Query: 647 GTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLD 685
+SGGQR R+++ + + L +LD P LD
Sbjct: 154 LGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 529 LMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRI 588
+++++ + G + A+ G +G+GKT+ L + G + G I +G+V+ + I
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSGRVSFCSQFSWI 110
Query: 589 IGFVPQDDIVHGNLTVEENLWFSA--RCRLSADLPKAEKVLVVERVIESLGLQHIRDSLV 646
+ +++I+ G ++ +E + S C+L D+ K + +D+ V
Sbjct: 111 MPGTIKENIISG-VSYDEYRYKSVVKACQLQQDITKFAE----------------QDNTV 153
Query: 647 GTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLD 685
+SGGQR R+++ + + L +LD P LD
Sbjct: 154 LGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 59/246 (23%), Positives = 106/246 (43%), Gaps = 33/246 (13%)
Query: 525 KNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVP----GCIMSGTILVNGKVA 580
+ + L+ V+ ++ G + A++GP+GAGK+T L L G + C + G L + +
Sbjct: 22 QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPK 81
Query: 581 SIQSYKRIIGFVPQDDIVHGNLTVEENLWFS-ARCRLSADLPKAEKVLVVERVIESLGLQ 639
++ + ++ Q + +V E + A S D ++V+ + L L
Sbjct: 82 ALARTRAVM---RQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQ---TDCLALA 135
Query: 640 HIRDSLVGTVEKRGISGGQRKRVNVGLEMVM------EPSLLILDEPTSGLDSSSSQ-XX 692
RD R +SGG+++RV + + P L LDEPTS LD Q
Sbjct: 136 Q-RDY-------RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTL 187
Query: 693 XXXXXXXXXXGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV------EEYF 746
+ +C V+H + A D ++LLA+G ++ P + + + Y
Sbjct: 188 RLLRQLTRQEPLAVCCVLHDLNLAALYA-DRIMLLAQGKLVACGTPEEVLNAETLTQWYQ 246
Query: 747 ASLGIT 752
A LG++
Sbjct: 247 ADLGVS 252
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 77/160 (48%), Gaps = 23/160 (14%)
Query: 529 LMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRI 588
+++ + K+ G++ AV G +GAGKT+ L + G + G I +G+++ + I
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSGRISFCSQFSWI 110
Query: 589 IGFVPQDDIVHGNLTVEENLWFSA--RCRLSADLPK-AEKVLVVERVIESLGLQHIRDSL 645
+ +++I+ G ++ +E + S C+L D+ K AEK +V LG I
Sbjct: 111 MPGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIV------LGEGGIT--- 160
Query: 646 VGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLD 685
+S GQ+ ++++ + + L +LD P LD
Sbjct: 161 --------LSEGQQAKISLARAVYKDADLYLLDSPFGYLD 192
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 96/213 (45%), Gaps = 29/213 (13%)
Query: 493 FSGVISMANEIEIRKRPTIEVAFKDLTITLKGKNKHLMRSVTGKLS------PGRVSAVM 546
S ++ + I ++K P + +L L+ H + + KL PG+V ++
Sbjct: 50 ISEILCIGCGICVKKCPFDAIQIINLPTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLV 109
Query: 547 GPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIV-HGNLTVE 605
G +G GK+T L L G+ + G+ ++ II + ++ + +E
Sbjct: 110 GTNGIGKSTALKILAGKQKPNL--------GRFDDPPEWQEIIKYFRGSELQNYFTKMLE 161
Query: 606 ENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ----------HIRDSLVGTVEKRGI- 654
+++ + + ++P+A K V++V E L L+ +I+ + V KR I
Sbjct: 162 DDIKAIIKPQYVDNIPRAIKG-PVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIE 220
Query: 655 --SGGQRKRVNVGLEMVMEPSLLILDEPTSGLD 685
SGG+ +R +G+ V E + + DEP+S LD
Sbjct: 221 KLSGGELQRFAIGMSCVQEADVYMFDEPSSYLD 253
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 63/153 (41%), Gaps = 24/153 (15%)
Query: 535 GKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQ 594
G+ S + +MG +G GKTT + L G + +N + + + G V Q
Sbjct: 373 GEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQ 432
Query: 595 DDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGI 654
F + R P+ + V++ L + I D E + +
Sbjct: 433 --------------LFFKKIRGQFLNPQFQT-----DVVKPLRIDDIIDQ-----EVQHL 468
Query: 655 SGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSS 687
SGG+ +RV + L + + + ++DEP++ LDS
Sbjct: 469 SGGELQRVAIVLALGIPADIYLIDEPSAYLDSE 501
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 73/159 (45%), Gaps = 22/159 (13%)
Query: 529 LMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRI 588
+++++ + G + A+ G +G+GKT+ L + G + G I +G+V+ + I
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSGRVSFCSQFSWI 110
Query: 589 IGFVPQDDIVHGNLTVEENLWFSA--RCRLSADLPKAEKVLVVERVIESLGLQHIRDSLV 646
+ +++I+ ++ +E + S C+L D+ K + +D+ V
Sbjct: 111 MPGTIKENII--GVSYDEYRYKSVVKACQLQQDITKFAE----------------QDNTV 152
Query: 647 GTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLD 685
+SGGQR R+++ + + L +LD P LD
Sbjct: 153 LGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 76/160 (47%), Gaps = 24/160 (15%)
Query: 529 LMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRI 588
+++ + K+ G++ AV G +GAGKT+ L + G + G I +G+++ + I
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSGRISFCSQFSWI 110
Query: 589 IGFVPQDDIVHGNLTVEENLWFSA--RCRLSADLPK-AEKVLVVERVIESLGLQHIRDSL 645
+ +++I+ ++ +E + S C+L D+ K AEK +V LG I
Sbjct: 111 MPGTIKENII--GVSYDEYRYRSVIKACQLEEDISKFAEKDNIV------LGEGGIT--- 159
Query: 646 VGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLD 685
+S GQ+ ++++ + + L +LD P LD
Sbjct: 160 --------LSEGQQAKISLARAVYKDADLYLLDSPFGYLD 191
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 36.6 bits (83), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 652 RGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSS 688
RG+SGGQ+ ++ + P L++LDEPT+ LD S
Sbjct: 900 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS 936
Score = 29.6 bits (65), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 544 AVMGPSGAGKTTFLSALKGRV 564
AV+GP+GAGK+T ++ L G +
Sbjct: 703 AVIGPNGAGKSTLINVLTGEL 723
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 36.6 bits (83), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 652 RGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSS 688
RG+SGGQ+ ++ + P L++LDEPT+ LD S
Sbjct: 894 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS 930
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 544 AVMGPSGAGKTTFLSALKGRV 564
AV+GP+GAGK+T ++ L G +
Sbjct: 697 AVIGPNGAGKSTLINVLTGEL 717
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 36.6 bits (83), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 652 RGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSS 688
RG+SGGQ+ ++ + P L++LDEPT+ LD S
Sbjct: 900 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS 936
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 544 AVMGPSGAGKTTFLSALKGRV 564
AV+GP+GAGK+T ++ L G +
Sbjct: 703 AVIGPNGAGKSTLINVLTGEL 723
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 35.8 bits (81), Expect = 0.14, Method: Composition-based stats.
Identities = 47/217 (21%), Positives = 94/217 (43%), Gaps = 22/217 (10%)
Query: 533 VTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFV 592
++G++ G + ++GP+GAGK+T L+ + G G G+I G+ S ++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA--- 72
Query: 593 PQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKR 652
+ L+ ++ F+ L + +K E + + G + D L + +
Sbjct: 73 ----LHRAYLSQQQTPPFATPVWHYLTLHQHDKTR-TELLNDVAGALALDDKLGRSTNQ- 126
Query: 653 GISGGQRKRVNVG---LEMVMEPS----LLILDEPTSGLDSSSSQXXXXXXXXXXXXGVN 705
+SGG+ +RV + L++ + + LL+LD+P + LD + G+
Sbjct: 127 -LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGLA 185
Query: 706 ICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742
I H ++ L +L KGG ++ G ++V
Sbjct: 186 IVMSSHDLNHTLRHAHRAWLL--KGGKMLASGRREEV 220
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 35.0 bits (79), Expect = 0.23, Method: Composition-based stats.
Identities = 42/192 (21%), Positives = 82/192 (42%), Gaps = 20/192 (10%)
Query: 533 VTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFV 592
++G++ G + ++GP+GAGK+T L+ G G G+I G+ S ++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAGQPLEAWSATKLA--- 72
Query: 593 PQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKR 652
+ L+ ++ F+ L + +K E + + G + D L + +
Sbjct: 73 ----LHRAYLSQQQTPPFATPVWHYLTLHQHDKTR-TELLNDVAGALALDDKLGRSTNQ- 126
Query: 653 GISGGQRKRVNVG---LEMVMEPS----LLILDEPTSGLDSSSSQXXXXXXXXXXXXGVN 705
+SGG+ +RV + L++ + + LL+LDEP + LD + G+
Sbjct: 127 -LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQGLA 185
Query: 706 ICTVVHQPSYAL 717
I H ++ L
Sbjct: 186 IVXSSHDLNHTL 197
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 35.0 bits (79), Expect = 0.24, Method: Composition-based stats.
Identities = 47/217 (21%), Positives = 93/217 (42%), Gaps = 22/217 (10%)
Query: 533 VTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFV 592
++G++ G + ++GP+GAGK+T L+ + G G G+I G+ S ++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA--- 72
Query: 593 PQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKR 652
+ L+ ++ F+ L + +K E + + G + D L + +
Sbjct: 73 ----LHRAYLSQQQTPPFATPVWHYLTLHQHDKTR-TELLNDVAGALALDDKLGRSTNQ- 126
Query: 653 GISGGQRKRVNVG---LEMVMEPS----LLILDEPTSGLDSSSSQXXXXXXXXXXXXGVN 705
+SGG+ +RV + L++ + + LL+LD+P LD + G+
Sbjct: 127 -LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQGLA 185
Query: 706 ICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742
I H ++ L +L KGG ++ G ++V
Sbjct: 186 IVMSSHDLNHTLRHAHRAWLL--KGGKMLASGRREEV 220
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 34.7 bits (78), Expect = 0.33, Method: Composition-based stats.
Identities = 42/192 (21%), Positives = 82/192 (42%), Gaps = 20/192 (10%)
Query: 533 VTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFV 592
++G++ G + ++GP+GAGK+T L+ G G G+I G+ S ++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAGQPLEAWSATKLA--- 72
Query: 593 PQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKR 652
+ L+ ++ F+ L + +K E + + G + D L + +
Sbjct: 73 ----LHRAYLSQQQTPPFATPVWHYLTLHQHDKTR-TELLNDVAGALALDDKLGRSTNQ- 126
Query: 653 GISGGQRKRVNVG---LEMVMEPS----LLILDEPTSGLDSSSSQXXXXXXXXXXXXGVN 705
+SGG+ +RV + L++ + + LL+LDEP + LD + G+
Sbjct: 127 -LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLA 185
Query: 706 ICTVVHQPSYAL 717
I H ++ L
Sbjct: 186 IVXSSHDLNHTL 197
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 23/152 (15%)
Query: 601 NLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRK 660
++TVE+ L F A +PK ++ L + +GL +++ T +SGG+ +
Sbjct: 806 DMTVEDALDFFA------SIPKIKRKL---ETLYDVGLGYMKLGQPATT----LSGGEAQ 852
Query: 661 RVNVGLEMVMEP---SLLILDEPTSGLDSSSSQXXXXXXXXXXXXGVNICTVVHQPSYAL 717
RV + E+ +L ILDEPT+GL G + + H + +
Sbjct: 853 RVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEH--NLDV 910
Query: 718 FRMFDDLILLA-----KGGVIVYHGPVKKVEE 744
+ D +I L +GG IV G ++V E
Sbjct: 911 IKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 942
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 23/152 (15%)
Query: 601 NLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRK 660
++TVE+ L F A +PK ++ L + +GL +++ T +SGG+ +
Sbjct: 504 DMTVEDALDFFA------SIPKIKRKL---ETLYDVGLGYMKLGQPATT----LSGGEAQ 550
Query: 661 RVNVGLEMVMEP---SLLILDEPTSGLDSSSSQXXXXXXXXXXXXGVNICTVVHQPSYAL 717
RV + E+ +L ILDEPT+GL G + + H + +
Sbjct: 551 RVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEH--NLDV 608
Query: 718 FRMFDDLILLA-----KGGVIVYHGPVKKVEE 744
+ D +I L +GG IV G ++V E
Sbjct: 609 IKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 640
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 66/150 (44%), Gaps = 23/150 (15%)
Query: 601 NLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRK 660
++TV+E L F ++P ++ L +V+ +GL +++ T +SGG+ +
Sbjct: 766 DMTVDEALEFFK------NIPSIKRTL---QVLHDVGLGYVKLGQPATT----LSGGEAQ 812
Query: 661 RVNVGLEMVMEPS---LLILDEPTSGLDSSSSQXXXXXXXXXXXXGVNICTVVHQPSYAL 717
R+ + E+ + L ILDEPT GL + G + + H + +
Sbjct: 813 RIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEH--NLDV 870
Query: 718 FRMFDDLILLA-----KGGVIVYHGPVKKV 742
+ D +I L +GG IV G +++
Sbjct: 871 IKNADHIIDLGPEGGKEGGYIVATGTPEEI 900
>pdb|1S4Q|A Chain A, Crystal Structure Of Guanylate Kinase From Mycobacterium
Tuberculosis (Rv1389)
Length = 228
Score = 30.8 bits (68), Expect = 4.3, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 540 GRVSAVMGPSGAGKTTFLSALKGRVP 565
GRV + GPS GK+T + L+ R+P
Sbjct: 23 GRVVVLSGPSAVGKSTVVRCLRERIP 48
>pdb|1ZNW|A Chain A, Crystal Structure Of Unliganded Form Of Mycobacterium
Tuberculosis Guanylate Kinase
pdb|1ZNX|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Guanylate
Kinase In Complex With Gmp
pdb|1ZNY|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Guanylate
Kinase In Complex With Gdp
pdb|1ZNZ|A Chain A, Crystal Structure Of The Reduced Form Of Mycobacterium
Tuberculosis Guanylate Kinase In Complex With Gdp
Length = 207
Score = 30.8 bits (68), Expect = 4.4, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 540 GRVSAVMGPSGAGKTTFLSALKGRVP 565
GRV + GPS GK+T + L+ R+P
Sbjct: 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45
>pdb|1Z8F|A Chain A, Guanylate Kinase Double Mutant A58c, T157c From
Mycobacterium Tuberculosis (Rv1389)
Length = 228
Score = 30.8 bits (68), Expect = 4.4, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 540 GRVSAVMGPSGAGKTTFLSALKGRVP 565
GRV + GPS GK+T + L+ R+P
Sbjct: 23 GRVVVLSGPSAVGKSTVVRCLRERIP 48
>pdb|3ML3|A Chain A, Crystal Structure Of The Icsa Autochaperone Region
Length = 189
Score = 30.8 bits (68), Expect = 4.9, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 10/47 (21%)
Query: 562 GRVP-GCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEEN 607
G VP G MSGT+L+N A F+P IV GN+T+E+N
Sbjct: 13 GLVPRGSHMSGTVLINNINAP---------FLPDPVIVTGNMTLEKN 50
>pdb|2RCN|A Chain A, Crystal Structure Of The Ribosomal Interacting Gtpase Yjeq
From The Enterobacterial Species Salmonella Typhimurium
Length = 358
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%)
Query: 540 GRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVH 599
GR+S G SG GK++ L+AL G + + V+G + R+ F D++
Sbjct: 215 GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVID 274
Query: 600 GNLTVEENLW 609
E LW
Sbjct: 275 SPGVREFGLW 284
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 64/152 (42%), Gaps = 23/152 (15%)
Query: 601 NLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRK 660
+ TVE+ L F A +PK ++ L + +GL + + T +SGG+ +
Sbjct: 806 DXTVEDALDFFA------SIPKIKRKL---ETLYDVGLGYXKLGQPATT----LSGGEAQ 852
Query: 661 RVNVGLEMVMEP---SLLILDEPTSGLDSSSSQXXXXXXXXXXXXGVNICTVVHQPSYAL 717
RV + E+ +L ILDEPT+GL G + + H + +
Sbjct: 853 RVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEH--NLDV 910
Query: 718 FRMFDDLILLA-----KGGVIVYHGPVKKVEE 744
+ D +I L +GG IV G ++V E
Sbjct: 911 IKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 942
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 520 ITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKV 579
+T+ G +H +R + G +++V G SG+GK+T ++ + V ++G V G+
Sbjct: 648 LTVVGAREHNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGR- 706
Query: 580 ASIQSYKRIIGFVPQDDIV 598
+ R+ G D +V
Sbjct: 707 -----HTRVTGLDYLDKLV 720
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 533 VTGKLSPGRVSAVMGPSGAGKTTFLSA----LKGRVPGCIMSGTILVNGKVAS----IQS 584
+ K GR + GP G GKT A L +VP C M G+ + + ++ +++
Sbjct: 56 IKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMEN 115
Query: 585 YKRIIGF 591
++R IG
Sbjct: 116 FRRAIGL 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,926,451
Number of Sequences: 62578
Number of extensions: 1307277
Number of successful extensions: 3352
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3134
Number of HSP's gapped (non-prelim): 160
length of query: 1118
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1009
effective length of database: 8,152,335
effective search space: 8225706015
effective search space used: 8225706015
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)