Query 048718
Match_columns 1118
No_of_seqs 682 out of 3620
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 12:22:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048718.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048718hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0061 Transporter, ABC super 100.0 2E-87 4.4E-92 812.2 55.5 563 509-1118 22-610 (613)
2 PLN03211 ABC transporter G-25; 100.0 1.8E-83 3.9E-88 784.4 60.9 564 515-1116 71-658 (659)
3 TIGR00955 3a01204 The Eye Pigm 100.0 8.6E-83 1.9E-87 775.9 52.0 553 526-1118 37-615 (617)
4 PLN03140 ABC transporter G fam 100.0 1.5E-78 3.1E-83 788.7 58.2 559 511-1116 866-1466(1470)
5 TIGR00956 3a01205 Pleiotropic 100.0 4.6E-78 9.9E-83 785.7 53.6 563 526-1116 73-694 (1394)
6 TIGR00956 3a01205 Pleiotropic 100.0 2E-77 4.2E-82 779.8 56.5 560 511-1117 758-1391(1394)
7 PLN03140 ABC transporter G fam 100.0 1.1E-76 2.4E-81 771.2 55.4 551 527-1116 178-789 (1470)
8 KOG0065 Pleiotropic drug resis 100.0 4.3E-74 9.2E-79 708.3 34.1 552 513-1116 788-1383(1391)
9 KOG0065 Pleiotropic drug resis 100.0 5.5E-66 1.2E-70 636.6 38.4 552 526-1116 127-730 (1391)
10 COG1126 GlnQ ABC-type polar am 100.0 3.8E-51 8.2E-56 427.2 24.8 218 512-742 2-223 (240)
11 COG1135 AbcC ABC-type metal io 100.0 4.7E-47 1E-51 413.6 23.0 218 513-742 2-229 (339)
12 COG1127 Ttg2A ABC-type transpo 100.0 6.9E-46 1.5E-50 393.0 23.7 221 510-743 6-234 (263)
13 COG1125 OpuBA ABC-type proline 100.0 3.7E-46 8E-51 396.4 21.6 217 513-743 2-224 (309)
14 COG1131 CcmA ABC-type multidru 100.0 1.7E-45 3.6E-50 411.5 27.2 223 512-747 4-229 (293)
15 COG3842 PotA ABC-type spermidi 100.0 6.1E-46 1.3E-50 419.2 22.1 219 511-742 4-224 (352)
16 COG1116 TauB ABC-type nitrate/ 100.0 1.2E-45 2.6E-50 395.5 23.2 204 512-730 3-207 (248)
17 COG3839 MalK ABC-type sugar tr 100.0 1.3E-45 2.7E-50 414.8 24.3 219 511-743 2-222 (338)
18 COG1120 FepC ABC-type cobalami 100.0 1.9E-45 4.1E-50 399.9 22.4 220 512-742 2-226 (258)
19 COG3638 ABC-type phosphate/pho 100.0 2.1E-45 4.5E-50 388.4 21.1 226 511-746 2-239 (258)
20 COG1136 SalX ABC-type antimicr 100.0 6.9E-45 1.5E-49 388.7 25.0 207 513-732 2-219 (226)
21 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 7.8E-45 1.7E-49 393.4 24.5 220 511-743 3-226 (254)
22 COG1118 CysA ABC-type sulfate/ 100.0 9.3E-45 2E-49 394.8 20.1 220 512-743 2-226 (345)
23 COG2884 FtsE Predicted ATPase 100.0 4.7E-44 1E-48 366.8 20.1 212 513-737 2-219 (223)
24 PRK13537 nodulation ABC transp 100.0 4.1E-43 8.9E-48 394.6 28.5 219 512-744 7-227 (306)
25 TIGR02314 ABC_MetN D-methionin 100.0 4.8E-43 1E-47 399.2 29.0 218 513-742 2-228 (343)
26 COG4555 NatA ABC-type Na+ tran 100.0 3.8E-44 8.3E-49 370.1 17.4 219 513-744 2-222 (245)
27 COG1117 PstB ABC-type phosphat 100.0 6.4E-44 1.4E-48 371.6 19.2 235 511-763 6-248 (253)
28 PRK11650 ugpC glycerol-3-phosp 100.0 7.3E-43 1.6E-47 399.9 28.7 218 512-742 3-222 (356)
29 cd03261 ABC_Org_Solvent_Resist 100.0 8.2E-43 1.8E-47 376.6 27.5 217 513-742 1-224 (235)
30 TIGR03265 PhnT2 putative 2-ami 100.0 9.3E-43 2E-47 398.6 28.9 218 512-743 4-223 (353)
31 PRK11432 fbpC ferric transport 100.0 1.5E-42 3.2E-47 396.6 29.0 217 512-742 6-224 (351)
32 TIGR03258 PhnT 2-aminoethylpho 100.0 2E-42 4.3E-47 396.9 28.8 218 512-743 5-227 (362)
33 COG1122 CbiO ABC-type cobalt t 100.0 8.6E-43 1.9E-47 377.4 24.2 219 512-743 3-227 (235)
34 PRK13536 nodulation factor exp 100.0 4.9E-42 1.1E-46 390.8 29.5 220 511-744 40-261 (340)
35 PRK10851 sulfate/thiosulfate t 100.0 4.1E-42 8.8E-47 393.4 29.0 220 512-742 2-224 (353)
36 PRK09452 potA putrescine/sperm 100.0 5.6E-42 1.2E-46 394.7 29.3 218 511-742 13-232 (375)
37 TIGR00960 3a0501s02 Type II (G 100.0 3.5E-42 7.5E-47 366.9 25.4 208 513-732 2-215 (216)
38 cd03265 ABC_DrrA DrrA is the A 100.0 6.6E-42 1.4E-46 366.0 26.7 216 513-742 1-219 (220)
39 COG1124 DppF ABC-type dipeptid 100.0 2.5E-42 5.4E-47 367.4 22.2 219 511-743 2-230 (252)
40 TIGR01288 nodI ATP-binding ABC 100.0 1.1E-41 2.3E-46 382.3 28.7 218 512-743 4-223 (303)
41 cd03259 ABC_Carb_Solutes_like 100.0 6.7E-42 1.5E-46 364.0 25.6 211 513-737 1-213 (213)
42 PRK11153 metN DL-methionine tr 100.0 1.3E-41 2.7E-46 388.2 29.0 219 513-743 2-229 (343)
43 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.1E-41 2.5E-46 364.2 26.8 215 513-740 1-219 (220)
44 cd03219 ABC_Mj1267_LivG_branch 100.0 1E-41 2.3E-46 367.7 26.6 219 513-742 1-230 (236)
45 PRK11607 potG putrescine trans 100.0 1.4E-41 3E-46 391.8 29.4 219 511-743 18-238 (377)
46 cd03296 ABC_CysA_sulfate_impor 100.0 1.6E-41 3.4E-46 367.7 27.8 220 512-742 2-224 (239)
47 PRK11000 maltose/maltodextrin 100.0 1.5E-41 3.3E-46 390.9 28.9 218 512-743 3-222 (369)
48 PRK13643 cbiO cobalt transport 100.0 2E-41 4.4E-46 377.7 28.9 230 513-755 2-247 (288)
49 cd03218 ABC_YhbG The ABC trans 100.0 1.5E-41 3.3E-46 365.5 26.7 216 513-742 1-220 (232)
50 cd03263 ABC_subfamily_A The AB 100.0 1.3E-41 2.9E-46 363.1 25.8 217 513-742 1-219 (220)
51 cd03256 ABC_PhnC_transporter A 100.0 1.3E-41 2.9E-46 367.7 25.9 221 513-743 1-233 (241)
52 PRK13637 cbiO cobalt transport 100.0 4.4E-41 9.4E-46 374.8 29.9 220 512-743 2-233 (287)
53 cd03258 ABC_MetN_methionine_tr 100.0 2.3E-41 5E-46 364.6 26.5 218 513-742 2-228 (233)
54 TIGR03522 GldA_ABC_ATP gliding 100.0 3.3E-41 7.1E-46 378.2 28.5 218 512-744 2-221 (301)
55 cd03260 ABC_PstB_phosphate_tra 100.0 1.6E-41 3.6E-46 364.4 25.0 216 513-741 1-226 (227)
56 cd03266 ABC_NatA_sodium_export 100.0 2.4E-41 5.3E-46 360.6 25.9 213 513-737 2-218 (218)
57 cd03269 ABC_putative_ATPase Th 100.0 2.2E-41 4.9E-46 359.2 25.5 210 513-737 1-210 (210)
58 cd03301 ABC_MalK_N The N-termi 100.0 2.8E-41 6.1E-46 358.9 26.1 211 513-737 1-213 (213)
59 TIGR01188 drrA daunorubicin re 100.0 2E-41 4.4E-46 380.0 26.1 207 526-744 5-213 (302)
60 COG3840 ThiQ ABC-type thiamine 100.0 5E-42 1.1E-46 349.4 19.0 214 513-742 2-217 (231)
61 PRK13634 cbiO cobalt transport 100.0 5.9E-41 1.3E-45 374.3 29.3 218 512-742 2-233 (290)
62 PRK09493 glnQ glutamine ABC tr 100.0 6.1E-41 1.3E-45 363.1 27.9 217 513-742 2-223 (240)
63 PRK11264 putative amino-acid A 100.0 6.2E-41 1.3E-45 364.9 27.7 218 512-742 3-231 (250)
64 PRK13647 cbiO cobalt transport 100.0 8.8E-41 1.9E-45 369.9 29.3 218 512-742 4-225 (274)
65 cd03224 ABC_TM1139_LivF_branch 100.0 3.5E-41 7.5E-46 360.1 25.0 214 513-742 1-219 (222)
66 PRK11629 lolD lipoprotein tran 100.0 7.8E-41 1.7E-45 361.0 27.9 215 512-739 5-229 (233)
67 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 3.5E-41 7.7E-46 359.4 24.9 207 513-732 1-217 (218)
68 PRK13651 cobalt transporter AT 100.0 8.7E-41 1.9E-45 375.6 29.3 220 512-743 2-253 (305)
69 PRK09536 btuD corrinoid ABC tr 100.0 4.5E-41 9.7E-46 389.8 27.7 220 512-742 3-226 (402)
70 TIGR02315 ABC_phnC phosphonate 100.0 3.1E-41 6.6E-46 365.6 24.5 220 513-742 2-233 (243)
71 cd03295 ABC_OpuCA_Osmoprotecti 100.0 7.2E-41 1.6E-45 363.2 27.1 217 513-742 1-223 (242)
72 PRK11831 putative ABC transpor 100.0 9.9E-41 2.2E-45 368.3 28.4 219 511-742 6-231 (269)
73 cd03268 ABC_BcrA_bacitracin_re 100.0 4.1E-41 8.9E-46 356.7 24.2 207 513-737 1-208 (208)
74 PRK13650 cbiO cobalt transport 100.0 1E-40 2.3E-45 370.3 28.4 219 512-743 4-228 (279)
75 PRK15079 oligopeptide ABC tran 100.0 9E-41 1.9E-45 379.3 28.5 223 511-743 7-250 (331)
76 cd03234 ABCG_White The White s 100.0 1.3E-40 2.9E-45 357.6 26.9 219 513-737 4-226 (226)
77 cd03292 ABC_FtsE_transporter F 100.0 1E-40 2.2E-45 354.5 25.5 207 513-732 1-213 (214)
78 PRK13631 cbiO cobalt transport 100.0 2.4E-40 5.1E-45 374.4 30.0 230 511-753 20-277 (320)
79 PRK13646 cbiO cobalt transport 100.0 1.5E-40 3.2E-45 370.3 27.7 219 512-743 2-234 (286)
80 TIGR02673 FtsE cell division A 100.0 1E-40 2.2E-45 354.8 25.2 206 513-730 2-213 (214)
81 TIGR01186 proV glycine betaine 100.0 8.4E-41 1.8E-45 383.1 26.3 206 526-743 5-218 (363)
82 PRK13641 cbiO cobalt transport 100.0 2E-40 4.3E-45 369.4 28.1 219 512-743 2-233 (287)
83 TIGR00972 3a0107s01c2 phosphat 100.0 2.5E-40 5.5E-45 360.0 28.2 215 513-742 2-230 (247)
84 PRK10895 lipopolysaccharide AB 100.0 1.7E-40 3.7E-45 359.9 26.6 218 512-742 3-224 (241)
85 PRK11124 artP arginine transpo 100.0 2.3E-40 5.1E-45 359.0 27.6 218 512-742 2-228 (242)
86 PRK13635 cbiO cobalt transport 100.0 2.7E-40 5.8E-45 367.1 28.7 219 512-743 5-228 (279)
87 cd03226 ABC_cobalt_CbiO_domain 100.0 7.2E-41 1.6E-45 354.4 23.0 203 515-734 2-205 (205)
88 TIGR02211 LolD_lipo_ex lipopro 100.0 1.8E-40 3.9E-45 354.7 26.2 209 513-734 2-220 (221)
89 PRK10619 histidine/lysine/argi 100.0 3.2E-40 6.9E-45 361.5 28.8 218 512-742 5-239 (257)
90 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 3.5E-40 7.6E-45 356.6 28.6 216 513-743 2-220 (236)
91 TIGR01257 rim_protein retinal- 100.0 2.4E-38 5.2E-43 415.7 51.4 223 511-746 927-1151(2272)
92 PRK13649 cbiO cobalt transport 100.0 4.3E-40 9.3E-45 364.9 29.5 218 512-742 2-232 (280)
93 COG1137 YhbG ABC-type (unclass 100.0 5.9E-42 1.3E-46 353.6 13.4 221 511-743 3-227 (243)
94 PRK11248 tauB taurine transpor 100.0 2.9E-40 6.2E-45 362.3 27.6 213 513-740 2-216 (255)
95 cd03264 ABC_drug_resistance_li 100.0 1.5E-40 3.2E-45 353.2 24.3 209 513-737 1-211 (211)
96 COG0410 LivF ABC-type branched 100.0 1.1E-40 2.3E-45 352.8 22.7 217 512-743 3-225 (237)
97 PRK13632 cbiO cobalt transport 100.0 3.2E-40 6.9E-45 364.7 27.4 221 509-742 4-229 (271)
98 PRK13636 cbiO cobalt transport 100.0 5.4E-40 1.2E-44 365.2 29.4 219 512-743 5-230 (283)
99 cd03257 ABC_NikE_OppD_transpor 100.0 2.8E-40 6.2E-45 354.1 25.9 215 513-737 2-228 (228)
100 cd03225 ABC_cobalt_CbiO_domain 100.0 1.8E-40 3.9E-45 352.2 24.0 205 515-730 2-210 (211)
101 cd03262 ABC_HisP_GlnQ_permease 100.0 2.4E-40 5.2E-45 351.5 25.0 207 513-732 1-212 (213)
102 TIGR03005 ectoine_ehuA ectoine 100.0 4.3E-40 9.4E-45 359.2 27.4 217 513-742 1-234 (252)
103 PRK10908 cell division protein 100.0 4E-40 8.7E-45 352.8 26.7 209 513-734 2-216 (222)
104 COG0411 LivG ABC-type branched 100.0 6E-41 1.3E-45 357.1 20.1 221 512-743 4-238 (250)
105 PRK11308 dppF dipeptide transp 100.0 5E-40 1.1E-44 372.7 28.9 221 512-743 5-243 (327)
106 PRK11614 livF leucine/isoleuci 100.0 3E-40 6.6E-45 357.0 25.7 216 512-743 5-225 (237)
107 PRK11300 livG leucine/isoleuci 100.0 4.5E-40 9.8E-45 359.2 27.3 220 512-742 5-241 (255)
108 PRK14247 phosphate ABC transpo 100.0 6.8E-40 1.5E-44 357.0 28.5 220 512-742 3-232 (250)
109 PRK13644 cbiO cobalt transport 100.0 4E-40 8.7E-45 364.7 27.0 216 513-742 2-222 (274)
110 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2.6E-40 5.6E-45 365.2 24.8 215 514-742 26-248 (269)
111 PRK13638 cbiO cobalt transport 100.0 6.7E-40 1.5E-44 361.9 28.0 216 513-742 2-223 (271)
112 PRK14273 phosphate ABC transpo 100.0 8.2E-40 1.8E-44 357.4 28.2 220 511-743 6-237 (254)
113 TIGR01978 sufC FeS assembly AT 100.0 6E-40 1.3E-44 355.2 26.8 223 513-743 1-233 (243)
114 TIGR03411 urea_trans_UrtD urea 100.0 6.7E-40 1.4E-44 355.2 27.2 218 513-742 3-229 (242)
115 cd03235 ABC_Metallic_Cations A 100.0 1.6E-40 3.5E-45 353.4 21.7 209 515-737 2-213 (213)
116 PRK14267 phosphate ABC transpo 100.0 9.8E-40 2.1E-44 356.4 28.2 220 512-742 4-235 (253)
117 TIGR02769 nickel_nikE nickel i 100.0 7.9E-40 1.7E-44 360.3 27.6 220 513-743 3-239 (265)
118 PRK11231 fecE iron-dicitrate t 100.0 6.1E-40 1.3E-44 358.8 26.4 220 512-742 2-225 (255)
119 PRK13548 hmuV hemin importer A 100.0 8.8E-40 1.9E-44 358.8 27.5 218 512-743 2-229 (258)
120 PRK14268 phosphate ABC transpo 100.0 1E-39 2.2E-44 357.9 28.0 218 511-742 11-240 (258)
121 PRK13652 cbiO cobalt transport 100.0 1E-39 2.2E-44 361.9 28.1 219 512-743 3-226 (277)
122 PRK13640 cbiO cobalt transport 100.0 1.2E-39 2.7E-44 362.2 28.7 220 511-743 4-231 (282)
123 PRK13639 cbiO cobalt transport 100.0 1.6E-39 3.5E-44 360.0 29.5 218 513-743 2-225 (275)
124 PRK13648 cbiO cobalt transport 100.0 1.6E-39 3.5E-44 358.6 29.3 218 512-742 7-229 (269)
125 PRK11022 dppD dipeptide transp 100.0 1.1E-39 2.4E-44 369.8 28.8 223 512-743 3-242 (326)
126 PRK14241 phosphate transporter 100.0 1.7E-39 3.6E-44 356.0 28.7 220 512-742 4-240 (258)
127 PRK10575 iron-hydroxamate tran 100.0 8.9E-40 1.9E-44 359.9 26.6 220 512-742 11-235 (265)
128 PRK10070 glycine betaine trans 100.0 1E-39 2.3E-44 378.2 28.1 203 528-742 42-252 (400)
129 PRK10584 putative ABC transpor 100.0 1.4E-39 3.1E-44 349.6 26.8 211 512-735 6-226 (228)
130 PRK11247 ssuB aliphatic sulfon 100.0 9E-40 2E-44 359.1 25.8 207 512-740 12-219 (257)
131 TIGR03410 urea_trans_UrtE urea 100.0 8.5E-40 1.9E-44 351.8 25.0 213 513-742 1-219 (230)
132 PRK14245 phosphate ABC transpo 100.0 2.5E-39 5.5E-44 352.8 28.4 220 511-743 2-233 (250)
133 PRK15093 antimicrobial peptide 100.0 2.1E-39 4.6E-44 368.1 28.9 224 512-742 3-246 (330)
134 TIGR03873 F420-0_ABC_ATP propo 100.0 1.3E-39 2.8E-44 356.4 26.1 219 513-742 2-224 (256)
135 COG4525 TauB ABC-type taurine 100.0 6E-40 1.3E-44 337.2 21.5 222 513-747 4-227 (259)
136 PRK09984 phosphonate/organopho 100.0 1.5E-39 3.3E-44 357.1 26.3 222 512-742 4-240 (262)
137 PRK10253 iron-enterobactin tra 100.0 1.5E-39 3.2E-44 358.1 26.1 221 511-743 6-232 (265)
138 PRK09473 oppD oligopeptide tra 100.0 2.4E-39 5.1E-44 367.7 28.5 227 511-743 11-250 (330)
139 PRK13633 cobalt transporter AT 100.0 1.9E-39 4.2E-44 360.2 27.2 218 512-743 4-232 (280)
140 PRK13645 cbiO cobalt transport 100.0 2.1E-39 4.6E-44 361.2 27.6 219 511-742 5-238 (289)
141 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.4E-39 3E-44 345.8 24.4 209 513-737 1-211 (211)
142 TIGR03740 galliderm_ABC gallid 100.0 2.2E-39 4.7E-44 347.3 26.1 210 513-741 1-210 (223)
143 COG4152 ABC-type uncharacteriz 100.0 3.1E-40 6.7E-45 349.3 19.1 221 512-747 2-222 (300)
144 PRK14242 phosphate transporter 100.0 3.7E-39 8E-44 351.9 28.1 218 512-742 6-235 (253)
145 PRK14269 phosphate ABC transpo 100.0 3.1E-39 6.6E-44 351.6 27.4 219 512-742 2-228 (246)
146 PRK10744 pstB phosphate transp 100.0 3.7E-39 8E-44 353.8 28.2 220 510-742 11-242 (260)
147 PRK14250 phosphate ABC transpo 100.0 2.3E-39 4.9E-44 351.8 26.0 212 512-742 3-219 (241)
148 KOG0058 Peptide exporter, ABC 100.0 2E-40 4.3E-45 393.3 18.9 224 510-743 463-690 (716)
149 TIGR03415 ABC_choXWV_ATP choli 100.0 3E-39 6.4E-44 372.2 28.1 206 526-743 36-253 (382)
150 PRK14235 phosphate transporter 100.0 5.3E-39 1.1E-43 354.3 28.5 220 511-742 18-249 (267)
151 PRK13642 cbiO cobalt transport 100.0 5.5E-39 1.2E-43 356.0 28.8 219 512-743 4-228 (277)
152 PRK14256 phosphate ABC transpo 100.0 6.2E-39 1.3E-43 350.1 28.7 219 512-742 4-234 (252)
153 cd03300 ABC_PotA_N PotA is an 100.0 4.8E-39 1E-43 347.1 27.3 216 513-742 1-218 (232)
154 COG2274 SunT ABC-type bacterio 100.0 4.2E-40 9.2E-45 402.4 20.7 225 510-744 469-696 (709)
155 PRK11144 modC molybdate transp 100.0 3.4E-39 7.5E-44 369.3 26.9 208 513-743 2-217 (352)
156 TIGR00968 3a0106s01 sulfate AB 100.0 5.4E-39 1.2E-43 348.0 27.0 217 513-743 1-219 (237)
157 PRK13549 xylose transporter AT 100.0 2.2E-39 4.7E-44 387.1 26.3 222 512-742 5-230 (506)
158 TIGR03608 L_ocin_972_ABC putat 100.0 2.5E-39 5.3E-44 342.0 23.7 199 515-727 1-206 (206)
159 PRK15112 antimicrobial peptide 100.0 4.7E-39 1E-43 354.7 26.9 220 512-742 4-237 (267)
160 COG4175 ProV ABC-type proline/ 100.0 7.4E-40 1.6E-44 356.7 20.1 203 529-743 43-253 (386)
161 TIGR02142 modC_ABC molybdenum 100.0 4.1E-39 9E-44 368.9 27.1 209 517-743 4-220 (354)
162 cd03252 ABCC_Hemolysin The ABC 100.0 1.3E-39 2.7E-44 352.0 21.3 214 513-743 1-224 (237)
163 PRK10771 thiQ thiamine transpo 100.0 4.6E-39 1E-43 347.0 25.7 215 513-743 2-218 (232)
164 PRK14259 phosphate ABC transpo 100.0 6.9E-39 1.5E-43 353.9 27.4 219 511-743 12-252 (269)
165 PRK14239 phosphate transporter 100.0 9.1E-39 2E-43 348.3 28.0 218 512-742 5-234 (252)
166 PRK14240 phosphate transporter 100.0 1.1E-38 2.5E-43 347.4 28.6 218 512-742 3-232 (250)
167 TIGR01277 thiQ thiamine ABC tr 100.0 5.4E-39 1.2E-43 342.3 25.4 210 513-738 1-212 (213)
168 PRK14274 phosphate ABC transpo 100.0 1E-38 2.2E-43 350.0 28.3 219 511-742 11-241 (259)
169 cd03299 ABC_ModC_like Archeal 100.0 8.8E-39 1.9E-43 345.9 27.4 215 513-742 1-217 (235)
170 PRK14270 phosphate ABC transpo 100.0 1.1E-38 2.4E-43 347.9 27.9 219 511-742 3-233 (251)
171 PRK13547 hmuV hemin importer A 100.0 6.1E-39 1.3E-43 355.2 25.8 219 513-742 2-242 (272)
172 PRK14237 phosphate transporter 100.0 1.8E-38 3.9E-43 350.1 29.0 220 510-742 18-249 (267)
173 COG0444 DppD ABC-type dipeptid 100.0 5.5E-39 1.2E-43 354.7 24.8 221 513-742 2-241 (316)
174 PRK14272 phosphate ABC transpo 100.0 1.9E-38 4E-43 345.9 28.5 219 512-742 4-234 (252)
175 PRK10762 D-ribose transporter 100.0 4.7E-39 1E-43 383.8 26.1 220 512-742 4-228 (501)
176 cd03297 ABC_ModC_molybdenum_tr 100.0 7.9E-39 1.7E-43 341.0 25.0 202 517-737 5-214 (214)
177 PRK14262 phosphate ABC transpo 100.0 1.6E-38 3.4E-43 346.3 27.8 219 512-743 3-233 (250)
178 PRK14244 phosphate ABC transpo 100.0 1.5E-38 3.3E-43 346.8 27.3 219 512-742 5-235 (251)
179 PRK14253 phosphate ABC transpo 100.0 1.8E-38 3.8E-43 345.7 27.5 218 512-742 3-231 (249)
180 PRK11701 phnK phosphonate C-P 100.0 1.5E-38 3.3E-43 348.4 27.1 218 512-742 6-239 (258)
181 cd03267 ABC_NatA_like Similar 100.0 9E-39 2E-43 346.2 24.8 201 525-737 32-236 (236)
182 PRK14260 phosphate ABC transpo 100.0 1.8E-38 4E-43 348.2 27.4 219 512-742 7-241 (259)
183 PRK09700 D-allose transporter 100.0 6.9E-39 1.5E-43 383.1 25.8 220 512-742 5-232 (510)
184 cd03251 ABCC_MsbA MsbA is an e 100.0 4.1E-39 8.8E-44 347.1 21.3 214 513-743 1-224 (234)
185 COG4598 HisP ABC-type histidin 100.0 9.4E-40 2E-44 331.7 14.8 218 512-742 6-239 (256)
186 TIGR02982 heterocyst_DevA ABC 100.0 1.8E-38 3.9E-43 339.9 25.6 209 513-733 2-219 (220)
187 PRK14251 phosphate ABC transpo 100.0 3.2E-38 6.9E-43 344.1 27.5 218 512-742 4-233 (251)
188 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 4.5E-39 9.8E-44 397.3 23.3 213 511-743 450-672 (686)
189 PRK14248 phosphate ABC transpo 100.0 4.1E-38 9E-43 347.0 28.4 218 512-742 21-250 (268)
190 PRK14261 phosphate ABC transpo 100.0 3.7E-38 8E-43 344.2 27.8 218 512-742 6-235 (253)
191 cd03232 ABC_PDR_domain2 The pl 100.0 2.2E-38 4.8E-43 333.0 25.0 188 512-737 3-192 (192)
192 cd03233 ABC_PDR_domain1 The pl 100.0 2.1E-38 4.5E-43 336.0 24.9 194 512-737 3-202 (202)
193 PRK14249 phosphate ABC transpo 100.0 4.2E-38 9.1E-43 343.4 28.0 218 512-742 4-233 (251)
194 PRK11174 cysteine/glutathione 100.0 6.1E-39 1.3E-43 389.4 23.6 214 511-743 348-571 (588)
195 PRK14258 phosphate ABC transpo 100.0 4.4E-38 9.5E-43 345.7 28.0 221 512-743 7-244 (261)
196 PRK14271 phosphate ABC transpo 100.0 4.9E-38 1.1E-42 348.5 28.5 220 511-743 20-250 (276)
197 PRK14254 phosphate ABC transpo 100.0 4.5E-38 9.8E-43 350.4 28.4 217 512-742 39-267 (285)
198 PRK14255 phosphate ABC transpo 100.0 6.4E-38 1.4E-42 341.9 28.7 218 512-742 5-234 (252)
199 PRK10418 nikD nickel transport 100.0 4.4E-38 9.5E-43 344.3 27.4 216 512-742 4-228 (254)
200 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 6.3E-39 1.4E-43 346.7 20.5 215 513-744 1-226 (238)
201 PRK15439 autoinducer 2 ABC tra 100.0 2.1E-38 4.5E-43 379.1 26.8 213 512-742 11-227 (510)
202 KOG0057 Mitochondrial Fe/S clu 100.0 3.9E-39 8.4E-44 371.4 19.5 217 509-744 348-574 (591)
203 PRK10419 nikE nickel transport 100.0 4.7E-38 1E-42 347.0 27.3 220 512-742 3-239 (268)
204 cd03213 ABCG_EPDR ABCG transpo 100.0 3.9E-38 8.6E-43 331.8 25.3 186 512-737 3-194 (194)
205 PRK14275 phosphate ABC transpo 100.0 6.8E-38 1.5E-42 349.1 28.4 219 511-742 38-268 (286)
206 PRK14236 phosphate transporter 100.0 8.5E-38 1.8E-42 345.6 28.9 219 511-742 24-254 (272)
207 PRK14257 phosphate ABC transpo 100.0 6.6E-38 1.4E-42 355.7 28.7 225 511-743 79-312 (329)
208 PRK14238 phosphate transporter 100.0 7.2E-38 1.6E-42 346.1 28.0 218 512-742 24-253 (271)
209 PRK15056 manganese/iron transp 100.0 4.1E-38 9E-43 348.0 25.7 220 512-742 6-228 (272)
210 TIGR01184 ntrCD nitrate transp 100.0 2.2E-38 4.8E-43 341.9 22.8 199 530-740 1-200 (230)
211 PRK11176 lipid transporter ATP 100.0 2E-38 4.4E-43 384.2 25.2 217 511-743 340-566 (582)
212 TIGR02633 xylG D-xylose ABC tr 100.0 3.8E-38 8.1E-43 375.8 27.0 220 513-741 2-227 (500)
213 TIGR02323 CP_lyasePhnK phospho 100.0 6.2E-38 1.3E-42 342.2 26.4 218 512-742 3-236 (253)
214 PRK10247 putative ABC transpor 100.0 2.8E-38 6.2E-43 339.8 23.3 210 512-738 7-221 (225)
215 COG1132 MdlB ABC-type multidru 100.0 1E-38 2.2E-43 386.1 22.1 218 511-744 327-552 (567)
216 PRK13538 cytochrome c biogenes 100.0 4.5E-38 9.8E-43 333.2 24.3 199 513-727 2-202 (204)
217 PRK13543 cytochrome c biogenes 100.0 6.7E-38 1.4E-42 334.5 25.6 202 511-728 10-211 (214)
218 cd03254 ABCC_Glucan_exporter_l 100.0 1.6E-38 3.5E-43 341.4 21.0 214 512-743 2-225 (229)
219 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 9.2E-39 2E-43 395.9 22.0 214 511-743 476-699 (710)
220 PRK10261 glutathione transport 100.0 6.3E-38 1.4E-42 383.1 28.9 222 511-743 312-552 (623)
221 cd03245 ABCC_bacteriocin_expor 100.0 2E-38 4.3E-43 338.7 21.3 210 512-737 2-220 (220)
222 PRK14265 phosphate ABC transpo 100.0 1.1E-37 2.4E-42 345.2 27.9 220 510-743 18-257 (274)
223 CHL00131 ycf16 sulfate ABC tra 100.0 1.6E-37 3.4E-42 338.6 28.6 223 512-742 7-239 (252)
224 PRK10982 galactose/methyl gala 100.0 3.8E-38 8.2E-43 375.1 25.6 216 516-742 2-221 (491)
225 COG4181 Predicted ABC-type tra 100.0 1.1E-38 2.3E-43 322.2 17.2 211 512-735 6-226 (228)
226 PRK11288 araG L-arabinose tran 100.0 6.8E-38 1.5E-42 373.9 27.3 216 512-738 4-223 (501)
227 TIGR02770 nickel_nikD nickel i 100.0 6.1E-38 1.3E-42 338.1 24.4 205 529-743 1-214 (230)
228 PRK14263 phosphate ABC transpo 100.0 1.8E-37 3.8E-42 341.4 28.5 222 511-742 7-243 (261)
229 PRK14243 phosphate transporter 100.0 1.2E-37 2.5E-42 343.1 26.7 218 512-743 10-247 (264)
230 PRK14266 phosphate ABC transpo 100.0 1.7E-37 3.6E-42 338.3 27.5 219 511-742 2-232 (250)
231 COG1123 ATPase components of v 100.0 4.4E-38 9.5E-43 368.9 24.4 222 510-742 278-517 (539)
232 COG4988 CydD ABC-type transpor 100.0 1.4E-38 3E-43 371.8 19.9 217 509-743 317-542 (559)
233 cd03231 ABC_CcmA_heme_exporter 100.0 6.6E-38 1.4E-42 331.5 23.2 196 513-727 1-198 (201)
234 cd03253 ABCC_ATM1_transporter 100.0 3.9E-38 8.5E-43 339.9 21.3 213 513-743 1-223 (236)
235 TIGR03269 met_CoM_red_A2 methy 100.0 1.1E-37 2.4E-42 373.5 27.6 220 513-744 1-258 (520)
236 TIGR01257 rim_protein retinal- 100.0 8.9E-38 1.9E-42 410.4 28.9 224 512-747 1937-2162(2272)
237 TIGR03375 type_I_sec_LssB type 100.0 3E-38 6.4E-43 390.5 22.8 217 511-744 462-688 (694)
238 PRK14246 phosphate ABC transpo 100.0 2.2E-37 4.8E-42 339.9 27.2 218 512-743 10-240 (257)
239 COG1123 ATPase components of v 100.0 1.1E-37 2.4E-42 365.5 26.1 225 512-743 5-243 (539)
240 TIGR03269 met_CoM_red_A2 methy 100.0 1.4E-37 3E-42 372.7 27.3 219 512-743 279-516 (520)
241 PRK09580 sufC cysteine desulfu 100.0 2.6E-37 5.6E-42 335.9 26.8 223 513-743 2-234 (248)
242 TIGR01189 ccmA heme ABC export 100.0 1.2E-37 2.6E-42 328.3 23.2 195 513-726 1-197 (198)
243 PRK03695 vitamin B12-transport 100.0 1.2E-37 2.6E-42 340.0 23.7 209 514-742 2-220 (248)
244 PRK10261 glutathione transport 100.0 1.2E-37 2.5E-42 380.8 26.3 220 512-742 12-256 (623)
245 PRK13539 cytochrome c biogenes 100.0 1.5E-37 3.2E-42 330.2 23.3 197 512-727 2-198 (207)
246 COG4559 ABC-type hemin transpo 100.0 6.7E-38 1.5E-42 326.1 20.0 219 513-743 2-229 (259)
247 TIGR02324 CP_lyasePhnL phospho 100.0 2.3E-37 4.9E-42 331.7 24.8 204 513-727 2-222 (224)
248 PRK10790 putative multidrug tr 100.0 7.5E-38 1.6E-42 380.3 23.7 214 511-743 339-562 (592)
249 KOG0055 Multidrug/pheromone ex 100.0 2E-38 4.3E-43 393.8 18.6 224 510-743 348-575 (1228)
250 PRK15134 microcin C ABC transp 100.0 2.6E-37 5.6E-42 371.1 27.6 222 512-742 5-244 (529)
251 TIGR01193 bacteriocin_ABC ABC- 100.0 5E-38 1.1E-42 389.3 22.0 215 511-743 472-696 (708)
252 PRK14264 phosphate ABC transpo 100.0 5.5E-37 1.2E-41 344.8 28.3 221 512-742 45-287 (305)
253 PRK15134 microcin C ABC transp 100.0 1.8E-37 3.9E-42 372.5 25.9 220 512-742 275-513 (529)
254 PRK11160 cysteine/glutathione 100.0 5.2E-38 1.1E-42 380.7 21.2 216 511-743 337-561 (574)
255 PRK14252 phosphate ABC transpo 100.0 5.8E-37 1.3E-41 337.4 27.5 218 511-742 15-247 (265)
256 PRK13549 xylose transporter AT 100.0 1.4E-37 3E-42 371.7 23.8 223 512-742 259-492 (506)
257 TIGR00958 3a01208 Conjugate Tr 100.0 6.1E-38 1.3E-42 388.6 21.3 214 511-743 477-701 (711)
258 COG4161 ArtP ABC-type arginine 100.0 8.6E-38 1.9E-42 312.6 18.1 217 512-741 2-227 (242)
259 PRK13540 cytochrome c biogenes 100.0 2.9E-37 6.3E-42 326.1 23.3 194 513-725 2-197 (200)
260 TIGR01166 cbiO cobalt transpor 100.0 2.1E-37 4.5E-42 324.2 21.6 179 526-715 4-189 (190)
261 cd03289 ABCC_CFTR2 The CFTR su 100.0 2.5E-37 5.4E-42 342.9 23.5 214 512-743 2-224 (275)
262 TIGR01842 type_I_sec_PrtD type 100.0 1.5E-37 3.4E-42 374.2 23.2 219 511-743 315-541 (544)
263 cd03244 ABCC_MRP_domain2 Domai 100.0 2.3E-37 5E-42 330.7 21.6 208 513-738 3-220 (221)
264 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 6.3E-37 1.4E-41 329.6 24.9 202 513-737 23-224 (224)
265 cd03230 ABC_DR_subfamily_A Thi 100.0 4.3E-37 9.4E-42 317.9 22.7 169 513-730 1-171 (173)
266 PRK09544 znuC high-affinity zi 100.0 5.8E-37 1.3E-41 335.6 24.2 201 512-742 4-207 (251)
267 cd03248 ABCC_TAP TAP, the Tran 100.0 1.5E-37 3.2E-42 333.5 19.1 210 510-730 9-224 (226)
268 PRK13657 cyclic beta-1,2-gluca 100.0 3.3E-37 7.1E-42 374.5 23.5 214 512-743 334-557 (588)
269 COG4987 CydC ABC-type transpor 100.0 4.6E-38 9.9E-43 362.4 14.9 215 512-743 336-560 (573)
270 PRK09700 D-allose transporter 100.0 3.9E-37 8.4E-42 368.1 23.3 215 512-739 265-493 (510)
271 cd03229 ABC_Class3 This class 100.0 6.4E-37 1.4E-41 318.1 21.4 171 513-730 1-177 (178)
272 TIGR02203 MsbA_lipidA lipid A 100.0 3E-37 6.5E-42 372.9 22.0 217 511-743 329-555 (571)
273 TIGR02633 xylG D-xylose ABC tr 100.0 5.1E-37 1.1E-41 366.1 23.2 221 512-740 257-488 (500)
274 cd03288 ABCC_SUR2 The SUR doma 100.0 6.5E-37 1.4E-41 335.8 22.1 215 511-743 18-242 (257)
275 TIGR01846 type_I_sec_HlyB type 100.0 3.6E-37 7.7E-42 380.9 22.4 216 511-743 454-679 (694)
276 COG1129 MglA ABC-type sugar tr 100.0 8.2E-37 1.8E-41 356.2 24.0 217 511-738 7-228 (500)
277 PRK10938 putative molybdenum t 100.0 5.8E-37 1.3E-41 364.7 23.2 209 512-742 3-222 (490)
278 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.5E-36 3.2E-41 321.1 23.5 190 513-746 1-195 (200)
279 PRK13546 teichoic acids export 100.0 5.7E-36 1.2E-40 330.3 29.0 211 512-744 4-232 (264)
280 COG4604 CeuD ABC-type enteroch 100.0 6.3E-38 1.4E-42 322.9 12.5 219 513-743 2-224 (252)
281 cd03247 ABCC_cytochrome_bd The 100.0 9.5E-37 2.1E-41 316.6 21.4 176 513-737 1-178 (178)
282 PTZ00265 multidrug resistance 100.0 2.4E-37 5.3E-42 405.1 21.3 220 511-743 1164-1451(1466)
283 cd03246 ABCC_Protease_Secretio 100.0 1.1E-36 2.4E-41 314.9 21.3 168 513-730 1-171 (173)
284 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.9E-36 4.2E-41 321.0 22.9 198 512-738 6-206 (207)
285 COG4618 ArpD ABC-type protease 100.0 5.6E-37 1.2E-41 350.6 19.7 232 507-747 329-563 (580)
286 PRK10789 putative multidrug tr 100.0 7.9E-37 1.7E-41 370.0 21.9 215 512-743 313-537 (569)
287 cd03215 ABC_Carb_Monos_II This 100.0 2E-36 4.3E-41 315.5 21.9 170 512-730 4-180 (182)
288 TIGR02204 MsbA_rel ABC transpo 100.0 1E-36 2.2E-41 368.8 21.9 215 511-742 336-561 (576)
289 PRK10762 D-ribose transporter 100.0 3E-36 6.5E-41 359.7 24.8 215 512-742 257-482 (501)
290 COG4148 ModC ABC-type molybdat 100.0 5.4E-37 1.2E-41 329.6 15.1 194 532-743 16-217 (352)
291 TIGR02868 CydC thiol reductant 100.0 9.5E-37 2.1E-41 365.9 18.7 188 511-713 333-529 (529)
292 PRK11288 araG L-arabinose tran 100.0 2.8E-36 6E-41 360.0 22.3 216 512-742 257-483 (501)
293 KOG0055 Multidrug/pheromone ex 100.0 1.2E-36 2.6E-41 378.0 19.6 220 510-744 985-1213(1228)
294 TIGR01192 chvA glucan exporter 100.0 3.7E-36 8.1E-41 365.2 23.2 215 511-743 333-557 (585)
295 cd03214 ABC_Iron-Siderophores_ 100.0 2.9E-36 6.3E-41 313.7 19.0 176 514-737 1-180 (180)
296 TIGR03771 anch_rpt_ABC anchore 100.0 5.7E-36 1.2E-40 321.8 21.8 196 535-742 1-199 (223)
297 PRK13545 tagH teichoic acids e 100.0 2.2E-35 4.7E-40 347.4 28.6 211 512-744 21-232 (549)
298 TIGR02857 CydD thiol reductant 100.0 1.4E-36 3.1E-41 364.3 19.0 200 512-727 320-529 (529)
299 PRK13541 cytochrome c biogenes 100.0 1.3E-35 2.9E-40 312.2 22.9 191 513-724 2-192 (195)
300 cd03250 ABCC_MRP_domain1 Domai 100.0 4.4E-36 9.6E-41 317.6 19.1 192 513-730 1-203 (204)
301 COG3845 ABC-type uncharacteriz 100.0 9E-36 2E-40 341.5 22.3 216 512-738 4-223 (501)
302 KOG0056 Heavy metal exporter H 100.0 1.1E-36 2.4E-41 343.6 13.9 224 509-743 534-760 (790)
303 cd03290 ABCC_SUR1_N The SUR do 100.0 1.6E-35 3.4E-40 316.5 21.6 199 514-729 2-216 (218)
304 TIGR01187 potA spermidine/putr 100.0 1.7E-35 3.7E-40 335.6 23.0 187 545-743 1-189 (325)
305 PRK15439 autoinducer 2 ABC tra 100.0 1.2E-35 2.6E-40 355.3 23.0 215 512-742 268-490 (510)
306 cd03228 ABCC_MRP_Like The MRP 100.0 1.4E-35 3E-40 306.2 20.2 167 513-730 1-170 (171)
307 PLN03130 ABC transporter C fam 100.0 8.6E-36 1.9E-40 393.9 22.8 215 511-743 1236-1460(1622)
308 PLN03232 ABC transporter C fam 100.0 6.7E-36 1.4E-40 394.1 21.5 215 511-743 1233-1457(1495)
309 COG0396 sufC Cysteine desulfur 100.0 8.2E-35 1.8E-39 307.1 25.3 234 511-753 2-242 (251)
310 cd03223 ABCD_peroxisomal_ALDP 100.0 2.7E-35 5.8E-40 303.2 20.9 165 513-732 1-165 (166)
311 cd03237 ABC_RNaseL_inhibitor_d 100.0 6.4E-35 1.4E-39 318.8 24.3 198 529-751 9-218 (246)
312 PRK10535 macrolide transporter 100.0 1.2E-34 2.5E-39 355.8 28.1 219 512-743 4-231 (648)
313 PRK15064 ABC transporter ATP-b 100.0 7.4E-35 1.6E-39 350.1 25.1 209 513-743 2-241 (530)
314 cd03216 ABC_Carb_Monos_I This 100.0 9.5E-35 2.1E-39 298.3 22.0 158 513-735 1-162 (163)
315 PTZ00243 ABC transporter; Prov 100.0 7.4E-35 1.6E-39 384.4 26.4 215 511-743 1307-1532(1560)
316 TIGR00957 MRP_assoc_pro multi 100.0 5.6E-35 1.2E-39 385.9 24.7 215 511-743 1283-1507(1522)
317 COG4172 ABC-type uncharacteriz 100.0 1.3E-34 2.9E-39 323.0 23.2 222 510-742 274-514 (534)
318 PRK11819 putative ABC transpor 100.0 1.2E-34 2.7E-39 350.1 24.9 210 511-742 5-248 (556)
319 PRK10522 multidrug transporter 100.0 1.1E-34 2.5E-39 349.6 23.9 206 511-736 321-530 (547)
320 PRK10938 putative molybdenum t 100.0 7.1E-35 1.5E-39 346.9 21.8 215 511-736 259-484 (490)
321 PRK10982 galactose/methyl gala 100.0 1E-34 2.2E-39 345.8 22.3 216 512-740 250-476 (491)
322 COG4619 ABC-type uncharacteriz 100.0 1.8E-35 4E-40 298.0 12.8 192 525-730 14-210 (223)
323 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.4E-34 5.3E-39 347.2 25.1 210 512-743 4-247 (552)
324 PTZ00265 multidrug resistance 100.0 1.4E-34 3E-39 379.3 24.0 213 512-730 382-655 (1466)
325 cd03291 ABCC_CFTR1 The CFTR su 100.0 6.1E-34 1.3E-38 317.0 25.5 202 510-743 37-246 (282)
326 TIGR01194 cyc_pep_trnsptr cycl 100.0 2.6E-34 5.6E-39 347.2 23.4 208 511-736 336-551 (555)
327 PRK15064 ABC transporter ATP-b 100.0 3.3E-34 7.1E-39 344.5 23.8 202 511-742 318-523 (530)
328 PRK15177 Vi polysaccharide exp 100.0 5.3E-34 1.2E-38 304.9 22.3 195 528-748 1-196 (213)
329 PRK11819 putative ABC transpor 100.0 6.1E-34 1.3E-38 344.1 25.4 205 511-741 323-530 (556)
330 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 7.6E-34 1.6E-38 342.9 25.1 205 511-741 321-528 (552)
331 TIGR01271 CFTR_protein cystic 100.0 6.2E-34 1.4E-38 375.1 26.5 214 511-743 1216-1439(1490)
332 PRK13409 putative ATPase RIL; 100.0 8.6E-34 1.9E-38 343.9 24.0 198 511-739 339-537 (590)
333 COG1119 ModF ABC-type molybden 100.0 3.5E-34 7.7E-39 305.4 16.7 217 511-738 30-256 (257)
334 COG4172 ABC-type uncharacteriz 100.0 2.4E-33 5.3E-38 312.9 22.8 226 511-742 5-245 (534)
335 COG4608 AppF ABC-type oligopep 100.0 1.6E-33 3.5E-38 305.7 20.4 187 511-743 3-198 (268)
336 COG4586 ABC-type uncharacteriz 100.0 6.8E-34 1.5E-38 305.4 16.3 207 528-746 38-248 (325)
337 COG4674 Uncharacterized ABC-ty 100.0 8.5E-34 1.8E-38 292.1 16.0 221 511-743 4-234 (249)
338 cd03236 ABC_RNaseL_inhibitor_d 100.0 2.3E-33 4.9E-38 308.2 18.6 200 517-737 5-220 (255)
339 COG5265 ATM1 ABC-type transpor 100.0 8.9E-34 1.9E-38 318.5 15.2 222 511-743 261-485 (497)
340 PRK11147 ABC transporter ATPas 100.0 7E-33 1.5E-37 339.6 23.3 206 511-742 318-526 (635)
341 PRK10636 putative ABC transpor 100.0 1.2E-32 2.5E-37 337.5 24.0 202 511-743 311-516 (638)
342 COG1101 PhnK ABC-type uncharac 100.0 6.5E-33 1.4E-37 289.5 16.8 214 514-736 3-230 (263)
343 TIGR00954 3a01203 Peroxysomal 100.0 9.6E-33 2.1E-37 339.4 20.7 199 512-731 451-655 (659)
344 PRK10636 putative ABC transpor 100.0 5.8E-32 1.3E-36 331.4 24.6 207 513-742 2-234 (638)
345 PLN03073 ABC transporter F fam 100.0 8.4E-32 1.8E-36 332.4 26.1 207 511-745 507-715 (718)
346 PLN03232 ABC transporter C fam 100.0 3.3E-32 7.1E-37 359.3 23.8 205 512-743 614-827 (1495)
347 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 6E-32 1.3E-36 272.5 19.8 143 513-730 1-143 (144)
348 PLN03130 ABC transporter C fam 100.0 4.2E-32 9.1E-37 359.0 23.3 204 512-743 614-827 (1622)
349 COG4136 ABC-type uncharacteriz 100.0 2.5E-32 5.5E-37 270.9 15.7 192 513-715 3-197 (213)
350 PRK11147 ABC transporter ATPas 100.0 2.9E-31 6.4E-36 325.3 25.5 206 512-741 3-240 (635)
351 cd03222 ABC_RNaseL_inhibitor T 100.0 1.7E-31 3.7E-36 278.5 19.3 153 516-740 4-159 (177)
352 cd03238 ABC_UvrA The excision 100.0 1.9E-31 4.1E-36 277.9 19.5 155 525-729 6-163 (176)
353 KOG0059 Lipid exporter ABCA1 a 100.0 8E-32 1.7E-36 340.0 19.7 224 511-747 563-790 (885)
354 COG1134 TagH ABC-type polysacc 100.0 1.1E-30 2.5E-35 278.9 24.3 202 527-749 40-241 (249)
355 TIGR00957 MRP_assoc_pro multi 100.0 2.5E-31 5.5E-36 351.4 23.5 209 512-743 636-849 (1522)
356 PRK13409 putative ATPase RIL; 100.0 1.8E-31 4E-36 323.7 19.2 190 517-729 78-286 (590)
357 COG4167 SapF ABC-type antimicr 100.0 3.5E-31 7.7E-36 269.9 17.6 220 513-743 5-238 (267)
358 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1.3E-30 2.7E-35 265.1 20.4 152 515-730 2-156 (157)
359 TIGR01271 CFTR_protein cystic 100.0 2.4E-30 5.3E-35 341.3 24.7 195 527-743 439-635 (1490)
360 COG0488 Uup ATPase components 100.0 7.9E-30 1.7E-34 303.8 21.2 210 511-742 2-238 (530)
361 COG4133 CcmA ABC-type transpor 100.0 3.4E-30 7.4E-35 265.0 15.1 188 513-715 3-192 (209)
362 PTZ00243 ABC transporter; Prov 100.0 9.8E-30 2.1E-34 336.1 21.7 196 526-743 672-869 (1560)
363 COG4107 PhnK ABC-type phosphon 100.0 7.7E-30 1.7E-34 258.4 14.0 216 512-743 6-240 (258)
364 KOG0054 Multidrug resistance-a 100.0 1.6E-29 3.5E-34 321.2 20.0 218 510-743 1136-1361(1381)
365 PLN03073 ABC transporter F fam 100.0 9.1E-30 2E-34 314.4 16.9 221 509-742 174-429 (718)
366 PF00005 ABC_tran: ABC transpo 100.0 4.1E-29 8.8E-34 247.0 13.6 134 530-682 1-137 (137)
367 cd03270 ABC_UvrA_I The excisio 100.0 3.7E-28 8E-33 262.3 20.6 193 525-737 6-226 (226)
368 KOG0054 Multidrug resistance-a 100.0 5.2E-28 1.1E-32 307.5 21.9 207 510-743 516-730 (1381)
369 COG4778 PhnL ABC-type phosphon 100.0 3.7E-28 8.1E-33 245.6 13.7 206 512-728 4-226 (235)
370 cd03271 ABC_UvrA_II The excisi 100.0 1.7E-27 3.6E-32 262.4 19.0 198 526-739 7-261 (261)
371 COG0488 Uup ATPase components 99.9 1.4E-26 3E-31 276.2 22.0 204 510-743 319-524 (530)
372 cd03278 ABC_SMC_barmotin Barmo 99.9 3.1E-27 6.8E-32 250.3 12.8 168 531-731 14-192 (197)
373 COG1129 MglA ABC-type sugar tr 99.9 1.1E-25 2.3E-30 263.4 21.2 214 511-739 262-485 (500)
374 cd03272 ABC_SMC3_euk Eukaryoti 99.9 6.4E-26 1.4E-30 246.0 13.4 189 526-729 14-235 (243)
375 COG4138 BtuD ABC-type cobalami 99.9 3.5E-26 7.5E-31 232.3 7.1 207 512-742 3-219 (248)
376 cd03279 ABC_sbcCD SbcCD and ot 99.9 9.4E-25 2E-29 233.5 15.6 193 512-731 5-210 (213)
377 cd03273 ABC_SMC2_euk Eukaryoti 99.9 2.5E-25 5.5E-30 243.4 10.9 179 540-728 25-242 (251)
378 cd03274 ABC_SMC4_euk Eukaryoti 99.9 2.1E-26 4.6E-31 246.7 1.7 189 512-730 5-205 (212)
379 cd03240 ABC_Rad50 The catalyti 99.9 1.1E-24 2.4E-29 232.0 12.0 167 534-732 17-200 (204)
380 PRK00635 excinuclease ABC subu 99.9 1.1E-23 2.4E-28 274.4 22.9 217 512-743 600-905 (1809)
381 PRK00349 uvrA excinuclease ABC 99.9 2.8E-23 6.1E-28 261.1 22.0 126 602-743 792-926 (943)
382 COG4178 ABC-type uncharacteriz 99.9 2.3E-23 5.1E-28 248.0 17.7 198 511-730 391-589 (604)
383 COG3845 ABC-type uncharacteriz 99.9 7.1E-23 1.5E-27 235.9 20.7 223 510-742 255-490 (501)
384 COG4615 PvdE ABC-type sideroph 99.9 5.2E-24 1.1E-28 237.8 10.6 207 511-738 321-531 (546)
385 KOG0927 Predicted transporter 99.9 5.4E-23 1.2E-27 237.6 11.4 207 509-743 386-595 (614)
386 TIGR00630 uvra excinuclease AB 99.9 8.7E-22 1.9E-26 247.4 22.7 126 601-742 789-923 (924)
387 COG1245 Predicted ATPase, RNas 99.9 1.4E-21 3.1E-26 221.7 17.8 189 511-728 341-530 (591)
388 COG4170 SapD ABC-type antimicr 99.9 1.9E-21 4.1E-26 202.5 11.1 227 513-743 4-247 (330)
389 cd03276 ABC_SMC6_euk Eukaryoti 99.9 5.9E-21 1.3E-25 202.6 15.1 166 530-729 12-190 (198)
390 KOG0927 Predicted transporter 99.9 2E-21 4.4E-26 224.6 12.3 216 511-742 74-307 (614)
391 cd03275 ABC_SMC1_euk Eukaryoti 99.8 1.7E-21 3.6E-26 213.1 9.4 180 541-731 23-235 (247)
392 KOG0060 Long-chain acyl-CoA tr 99.8 1.4E-20 3E-25 219.1 16.6 206 511-731 432-643 (659)
393 KOG0066 eIF2-interacting prote 99.8 4.2E-20 9.1E-25 207.5 14.5 192 511-731 585-778 (807)
394 KOG0062 ATPase component of AB 99.8 4.8E-20 1E-24 212.4 9.7 204 510-742 78-283 (582)
395 KOG2355 Predicted ABC-type tra 99.8 4.3E-19 9.4E-24 184.8 15.7 211 511-744 12-237 (291)
396 KOG0062 ATPase component of AB 99.8 1.1E-18 2.4E-23 201.2 15.7 208 511-744 361-569 (582)
397 cd03277 ABC_SMC5_euk Eukaryoti 99.8 2.7E-18 5.8E-23 184.4 15.4 78 652-730 125-210 (213)
398 COG1245 Predicted ATPase, RNas 99.8 4.6E-19 9.9E-24 201.6 9.7 168 537-728 97-287 (591)
399 cd03280 ABC_MutS2 MutS2 homolo 99.8 2.1E-18 4.5E-23 183.0 12.6 147 529-737 16-172 (200)
400 cd03239 ABC_SMC_head The struc 99.7 1.3E-17 2.8E-22 174.4 14.5 75 654-730 95-173 (178)
401 KOG0064 Peroxisomal long-chain 99.7 2.8E-18 6.1E-23 197.4 9.1 187 511-716 480-672 (728)
402 cd03283 ABC_MutS-like MutS-lik 99.7 3.6E-18 7.9E-23 181.6 8.5 137 527-716 14-151 (199)
403 COG2401 ABC-type ATPase fused 99.7 1.7E-17 3.7E-22 186.9 13.0 180 527-731 396-586 (593)
404 COG0178 UvrA Excinuclease ATPa 99.7 1.5E-16 3.2E-21 191.4 21.5 129 601-744 783-919 (935)
405 PRK00635 excinuclease ABC subu 99.7 6.5E-17 1.4E-21 211.9 19.4 127 601-743 1660-1795(1809)
406 cd03241 ABC_RecN RecN ATPase i 99.7 3.4E-17 7.3E-22 182.3 12.3 76 653-731 170-249 (276)
407 cd03227 ABC_Class2 ABC-type Cl 99.7 9.2E-17 2E-21 165.1 12.1 74 654-729 78-155 (162)
408 cd03285 ABC_MSH2_euk MutS2 hom 99.7 6.5E-17 1.4E-21 174.8 10.1 153 526-738 16-175 (222)
409 PRK00349 uvrA excinuclease ABC 99.7 5.4E-16 1.2E-20 195.9 14.7 136 600-743 435-584 (943)
410 TIGR00630 uvra excinuclease AB 99.6 9.3E-16 2E-20 193.5 15.5 135 601-743 434-582 (924)
411 KOG0066 eIF2-interacting prote 99.6 1.3E-16 2.8E-21 179.8 5.0 221 510-743 262-498 (807)
412 cd03243 ABC_MutS_homologs The 99.6 3.6E-16 7.7E-21 166.1 7.2 156 528-740 19-175 (202)
413 cd03282 ABC_MSH4_euk MutS4 hom 99.6 1.2E-15 2.7E-20 162.9 8.6 137 526-715 15-153 (204)
414 cd03242 ABC_RecF RecF is a rec 99.6 2.7E-14 5.9E-19 158.6 17.2 75 653-733 183-269 (270)
415 KOG0063 RNAse L inhibitor, ABC 99.5 3.2E-14 6.9E-19 161.3 12.7 176 527-728 349-531 (592)
416 cd03284 ABC_MutS1 MutS1 homolo 99.5 8.6E-14 1.9E-18 150.1 10.6 159 526-742 17-179 (216)
417 TIGR02858 spore_III_AA stage I 99.5 1.4E-13 3E-18 153.1 11.7 139 541-741 112-266 (270)
418 PF01061 ABC2_membrane: ABC-2 99.4 1.2E-13 2.7E-18 143.9 1.6 197 868-1064 1-209 (210)
419 smart00534 MUTSac ATPase domai 99.4 2.9E-13 6.2E-18 142.3 4.1 67 654-723 62-130 (185)
420 TIGR01069 mutS2 MutS2 family p 99.4 1.2E-12 2.6E-17 163.8 9.8 135 533-718 314-450 (771)
421 cd03281 ABC_MSH5_euk MutS5 hom 99.3 9E-12 2E-16 134.2 12.7 133 529-716 18-157 (213)
422 PRK00064 recF recombination pr 99.3 6.3E-11 1.4E-15 137.2 18.3 77 652-733 272-359 (361)
423 cd00820 PEPCK_HprK Phosphoenol 99.3 6.3E-12 1.4E-16 121.3 7.1 74 527-611 2-78 (107)
424 PF02463 SMC_N: RecF/RecN/SMC 99.3 1.8E-11 3.8E-16 131.3 10.8 88 628-729 122-213 (220)
425 KOG0063 RNAse L inhibitor, ABC 99.3 1.2E-11 2.7E-16 140.6 9.2 169 538-728 98-287 (592)
426 cd03287 ABC_MSH3_euk MutS3 hom 99.2 1.1E-10 2.4E-15 126.6 13.1 135 527-716 18-157 (222)
427 PTZ00132 GTP-binding nuclear p 99.2 2.4E-11 5.3E-16 129.8 7.9 44 658-701 157-205 (215)
428 PRK00409 recombination and DNA 99.1 6.6E-11 1.4E-15 148.7 7.9 79 653-735 390-469 (782)
429 PHA02562 46 endonuclease subun 99.1 1.4E-10 3.1E-15 140.9 9.5 77 652-732 467-554 (562)
430 PRK08533 flagellar accessory p 99.1 1.4E-09 3E-14 118.6 15.0 148 511-712 6-162 (230)
431 PRK07721 fliI flagellum-specif 99.1 2.1E-09 4.6E-14 127.0 17.5 171 527-741 146-340 (438)
432 TIGR00634 recN DNA repair prot 99.1 2.3E-10 5E-15 139.7 9.4 76 652-730 439-518 (563)
433 TIGR00618 sbcc exonuclease Sbc 99.1 3.8E-10 8.3E-15 146.7 11.2 79 651-730 948-1036(1042)
434 PF13304 AAA_21: AAA domain; P 99.1 4.1E-10 9E-15 118.0 9.1 63 652-714 235-300 (303)
435 cd01124 KaiC KaiC is a circadi 99.1 1.3E-09 2.9E-14 113.2 12.7 145 542-728 1-163 (187)
436 cd01128 rho_factor Transcripti 99.1 4.1E-11 8.9E-16 132.0 1.3 180 536-730 12-209 (249)
437 COG0178 UvrA Excinuclease ATPa 99.1 1.9E-09 4.2E-14 131.1 15.6 136 600-743 427-576 (935)
438 PRK10869 recombination and rep 99.0 4.7E-10 1E-14 136.5 10.0 75 653-730 430-508 (553)
439 cd03286 ABC_MSH6_euk MutS6 hom 99.0 4E-10 8.6E-15 122.0 7.7 139 526-716 16-156 (218)
440 cd01120 RecA-like_NTPases RecA 98.9 3.1E-09 6.7E-14 106.3 9.0 63 654-716 68-140 (165)
441 PRK03918 chromosome segregatio 98.9 2.6E-09 5.6E-14 136.7 9.8 77 651-729 786-868 (880)
442 PRK10246 exonuclease subunit S 98.9 1.4E-09 3E-14 141.3 7.2 76 651-728 947-1030(1047)
443 PRK13695 putative NTPase; Prov 98.9 8.2E-10 1.8E-14 114.7 3.6 78 653-737 78-157 (174)
444 TIGR02788 VirB11 P-type DNA tr 98.8 8.1E-09 1.8E-13 117.3 9.7 143 532-742 136-279 (308)
445 PRK01156 chromosome segregatio 98.8 1.9E-08 4.1E-13 129.3 12.7 79 651-731 799-887 (895)
446 PRK13830 conjugal transfer pro 98.8 5E-08 1.1E-12 124.0 16.0 78 668-750 649-735 (818)
447 TIGR00606 rad50 rad50. This fa 98.8 8.3E-09 1.8E-13 137.1 9.3 65 652-716 1198-1273(1311)
448 PRK06793 fliI flagellum-specif 98.8 2.5E-08 5.4E-13 117.5 11.1 169 513-739 131-306 (432)
449 COG3910 Predicted ATPase [Gene 98.7 7.2E-08 1.6E-12 100.8 9.9 77 653-731 129-205 (233)
450 PRK06995 flhF flagellar biosyn 98.7 5.5E-08 1.2E-12 116.0 10.1 150 529-711 245-400 (484)
451 PRK06067 flagellar accessory p 98.7 4E-07 8.7E-12 99.1 15.8 156 534-728 19-186 (234)
452 TIGR02168 SMC_prok_B chromosom 98.7 2.8E-08 6E-13 130.0 7.9 76 651-729 1087-1166(1179)
453 TIGR01247 drrB daunorubicin re 98.6 3.7E-06 8E-11 91.3 21.1 153 940-1109 75-233 (236)
454 TIGR03062 pip_yhgE_Cterm YhgE/ 98.6 1.1E-06 2.3E-11 93.7 16.2 150 948-1116 53-207 (208)
455 cd01131 PilT Pilus retraction 98.6 1.9E-07 4.1E-12 99.6 9.9 57 663-728 66-122 (198)
456 smart00382 AAA ATPases associa 98.6 1.4E-06 3.1E-11 83.3 14.9 118 539-711 1-124 (148)
457 cd01125 repA Hexameric Replica 98.6 3.2E-07 6.9E-12 100.3 11.5 136 540-714 1-160 (239)
458 PRK02224 chromosome segregatio 98.5 1.4E-07 2.9E-12 121.2 9.0 78 651-730 779-869 (880)
459 TIGR03238 dnd_assoc_3 dnd syst 98.5 5.3E-08 1.1E-12 114.9 4.5 51 527-581 19-70 (504)
460 TIGR02169 SMC_prok_A chromosom 98.5 1.5E-07 3.2E-12 123.5 8.4 76 651-729 1072-1151(1164)
461 cd01130 VirB11-like_ATPase Typ 98.4 3.4E-07 7.3E-12 96.6 7.5 81 533-615 18-100 (186)
462 TIGR01291 nodJ ABC-2 type tran 98.4 3.6E-05 7.8E-10 85.2 23.1 225 870-1113 7-248 (253)
463 TIGR00025 Mtu_efflux ABC trans 98.4 3.2E-05 7E-10 84.0 22.4 213 882-1113 2-229 (232)
464 TIGR02655 circ_KaiC circadian 98.4 1.6E-08 3.5E-13 121.5 -4.3 161 534-728 15-190 (484)
465 PRK13891 conjugal transfer pro 98.4 3.8E-06 8.1E-11 107.6 15.5 53 664-716 680-733 (852)
466 cd02023 UMPK Uridine monophosp 98.4 3.4E-07 7.4E-12 97.0 5.1 113 542-686 1-113 (198)
467 TIGR03881 KaiC_arch_4 KaiC dom 98.3 3.1E-07 6.6E-12 99.4 2.8 41 534-577 14-56 (229)
468 PRK07196 fliI flagellum-specif 98.3 1.3E-06 2.8E-11 103.2 7.7 87 527-614 143-239 (434)
469 TIGR00611 recf recF protein. A 98.3 1.2E-06 2.6E-11 102.0 7.1 60 653-715 275-343 (365)
470 TIGR01420 pilT_fam pilus retra 98.3 5.9E-06 1.3E-10 95.5 12.6 56 663-727 187-242 (343)
471 COG0419 SbcC ATPase involved i 98.2 3.6E-06 7.8E-11 108.7 10.5 80 650-731 812-899 (908)
472 PRK06002 fliI flagellum-specif 98.2 3.6E-06 7.7E-11 99.7 9.5 84 510-597 137-230 (450)
473 TIGR01026 fliI_yscN ATPase Fli 98.1 2.3E-05 4.9E-10 93.4 14.1 173 527-742 151-346 (440)
474 PRK09825 idnK D-gluconate kina 98.1 2.4E-06 5.2E-11 89.7 3.8 67 539-611 2-70 (176)
475 PLN03210 Resistant to P. syrin 98.1 9.2E-06 2E-10 107.4 10.1 44 533-577 200-243 (1153)
476 cd01122 GP4d_helicase GP4d_hel 98.1 6.8E-05 1.5E-09 83.2 15.3 38 527-564 17-54 (271)
477 PRK05399 DNA mismatch repair p 98.1 8.7E-06 1.9E-10 104.2 9.1 138 527-723 595-738 (854)
478 TIGR03861 phenyl_ABC_PedC alco 98.0 0.0011 2.3E-08 73.2 23.9 194 867-1061 1-218 (253)
479 PRK13898 type IV secretion sys 98.0 9.3E-05 2E-09 94.6 17.5 50 667-716 638-688 (800)
480 PRK14079 recF recombination pr 98.0 1E-05 2.2E-10 93.8 7.7 73 653-734 263-344 (349)
481 TIGR02680 conserved hypothetic 98.0 9E-06 1.9E-10 108.6 7.6 58 652-712 1246-1315(1353)
482 PRK15066 inner membrane transp 98.0 0.0015 3.3E-08 72.3 23.4 231 867-1115 7-252 (257)
483 PRK13873 conjugal transfer ATP 97.9 0.00023 4.9E-09 91.2 16.6 48 668-715 632-680 (811)
484 PRK00454 engB GTP-binding prot 97.8 0.00022 4.7E-09 74.6 12.9 65 629-702 127-195 (196)
485 PRK01889 GTPase RsgA; Reviewed 97.8 2.9E-05 6.2E-10 90.4 6.2 77 530-609 185-261 (356)
486 cd00009 AAA The AAA+ (ATPases 97.8 0.00016 3.4E-09 70.1 10.1 55 659-714 72-131 (151)
487 TIGR00235 udk uridine kinase. 97.8 1E-05 2.2E-10 86.6 2.0 28 538-565 4-31 (207)
488 cd01876 YihA_EngB The YihA (En 97.8 3.9E-05 8.4E-10 76.6 5.9 43 653-699 122-169 (170)
489 TIGR02903 spore_lon_C ATP-depe 97.7 9E-05 2E-09 92.0 9.7 112 539-698 174-291 (615)
490 TIGR00767 rho transcription te 97.7 6.9E-05 1.5E-09 87.7 7.8 54 511-565 129-193 (415)
491 TIGR00152 dephospho-CoA kinase 97.7 3.8E-05 8.2E-10 81.0 5.1 71 657-729 61-132 (188)
492 PRK06315 type III secretion sy 97.7 7.9E-05 1.7E-09 88.6 8.2 110 527-639 152-277 (442)
493 PRK10078 ribose 1,5-bisphospho 97.7 4.6E-05 1E-09 80.3 5.0 36 540-580 2-37 (186)
494 COG0842 ABC-type multidrug tra 97.7 0.0019 4.2E-08 70.2 17.8 161 940-1117 116-284 (286)
495 PRK09270 nucleoside triphospha 97.7 5.3E-05 1.1E-09 82.6 5.5 72 539-614 32-107 (229)
496 TIGR00554 panK_bact pantothena 97.7 3.5E-05 7.6E-10 87.2 4.2 74 541-615 63-138 (290)
497 PF13555 AAA_29: P-loop contai 97.6 5.5E-05 1.2E-09 66.5 4.4 35 531-565 13-48 (62)
498 PRK08149 ATP synthase SpaL; Va 97.6 8.5E-05 1.8E-09 88.0 7.3 71 526-597 138-216 (428)
499 PF13558 SbcCD_C: Putative exo 97.6 0.00011 2.4E-09 69.1 6.4 46 653-698 32-90 (90)
500 PRK10416 signal recognition pa 97.6 4.3E-05 9.2E-10 87.6 4.1 72 538-611 112-192 (318)
No 1
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2e-87 Score=812.18 Aligned_cols=563 Identities=30% Similarity=0.511 Sum_probs=450.1
Q ss_pred CceEEEEEeEEEEEcCC---cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CceeEEEECCEecChhh
Q 048718 509 PTIEVAFKDLTITLKGK---NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC-IMSGTILVNGKVASIQS 584 (1118)
Q Consensus 509 ~~~~l~~knLs~~~~~~---~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~-~~sG~I~inG~~~~~~~ 584 (1118)
....+.|+|+++..+.+ .+++|+|||++++|||++||||||||||||||++|+|+..+. ..+|+|++||++.+.+.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~ 101 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRS 101 (613)
T ss_pred ccceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhh
Confidence 45678999999998754 489999999999999999999999999999999999999753 58999999998777778
Q ss_pred hcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 048718 585 YKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNV 664 (1118)
Q Consensus 585 ~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsI 664 (1118)
+++.+|||.|||.++|+|||+|+|.|++.+|++...++.+++++|+++++.|||.+++|+++|+...||+||||||||+|
T Consensus 102 ~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsi 181 (613)
T KOG0061|consen 102 FRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSI 181 (613)
T ss_pred hhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHH
Confidence 99999999999999999999999999999999988899999999999999999999999999998889999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHHH
Q 048718 665 GLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVEE 744 (1118)
Q Consensus 665 ArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~~ 744 (1118)
|.+|++||+||+|||||+|||+.++.++++.|+++|++|+|||+++|||+..++++||++++|.+ |+++|+|+++++.+
T Consensus 182 a~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~G~~~~~~~ 260 (613)
T KOG0061|consen 182 ALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYSGSPRELLE 260 (613)
T ss_pred HHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEecCHHHHHH
Confidence 99999999999999999999999999999999999988999999999999999999999999987 58999999999999
Q ss_pred HHHhcCCCCCCCCCchhHHHHHhhccccCCCCCCCCccccchhhhccCCCCCchhhHHHHhhhcccccccccccccCCcc
Q 048718 745 YFASLGITVPDRINPPDYFIDILEGIVKPSSSSGFDYKELPVRWMLHNGYSVPMDMLQSIEGMSASVAEHSSQEINDDSS 824 (1118)
Q Consensus 745 yf~~lG~~~p~~~n~aDfl~d~~~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (1118)
||++.|++||++.||+||++|.++.. .. ....+.....|...+.++. .
T Consensus 261 ff~~~G~~~P~~~Npadf~l~l~s~~-~~----~~~~~~~~~~~~~~~~~~~-~-------------------------- 308 (613)
T KOG0061|consen 261 FFSSLGFPCPELENPADFLLDLLSVD-SG----TRELEEAVRIAKLINKFSQ-T-------------------------- 308 (613)
T ss_pred HHHhCCCCCCCcCChHHHHHHHHccC-CC----chhHHhHHHHHHHhhhccc-c--------------------------
Confidence 99999999999999999999998753 00 1111111111111111100 0
Q ss_pred hhhccchhhHHHHHhhhhcchhhhhhhccccCCCCcccCCchhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh
Q 048718 825 EVQSFAGEFWQDIKCNAAHRKDSIQRNFLNLGDLSKRRTPGVFVQYRYFLGRVGKQRLREAKIQVVDYLILLLAGICIGT 904 (1118)
Q Consensus 825 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~s~~~Q~~~L~~R~~~q~~Rd~~~~~~~~~~~ll~GlilG~ 904 (1118)
+ ..++... .....+...........++||.|++++++|.+++.+|++.+...+.++.+++|+++|+
T Consensus 309 ---~---~~~~~~~--------~~~~~~~~~~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~ 374 (613)
T KOG0061|consen 309 ---D---NLKKTLE--------ALEKSLSTSKKVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGL 374 (613)
T ss_pred ---c---hhhhhHH--------HHhhhcccccccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000000 0000111111111222789999999999999999999999999999999999999999
Q ss_pred hccc-Cc---cccchhhHHHHHHHHH-HHHhhhhHHHHHHhhhHHHhhcCCCCCH-HHHHHHHHHHHHHHHHHHHHhhhh
Q 048718 905 LAKV-SD---ENFGATGYTHTVIAVS-LLCKIAALRSFSLDKLHYWRESASGMSS-LAFFLSKDTVDHFNTLIKPLVYLS 978 (1118)
Q Consensus 905 l~~~-~~---~~~g~~g~~~~vi~~~-~~~~i~al~~F~~Er~vf~RE~~sG~y~-~aYflAk~l~dlp~~lv~piif~s 978 (1118)
+|.. +. ..++..|+++.++.+. +..++.++..|+.||.+|.||+.+|+|+ .+||+|+.++++|+.++.|++|++
T Consensus 375 ~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~ 454 (613)
T KOG0061|consen 375 LYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSS 454 (613)
T ss_pred HhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 8743 22 2235566666555554 5556678999999999999999999997 599999999999999999999999
Q ss_pred hhccccCCcchhHHH-HHH--HHHHHHHHHHHHHHHHHhcCc-hhHHHHHH--HHHH--HHhhhcCCCcchhhhhccccc
Q 048718 979 MFYFFNNPRSSVTDN-YLV--LACLVYCVTGIAYIMAICFEP-GPAQLWSV--LLPV--VLTLIATNNDNNRFVERISDL 1050 (1118)
Q Consensus 979 i~Y~m~g~~~~~~~~-~~v--~l~l~~~~~~lg~~lsi~~~~-~~a~l~s~--l~p~--v~~l~~~~~~iP~~~~Wl~yi 1050 (1118)
++|||+|+++++..+ |++ .++.+++..+++++++..+.. ..+..+.+ ++++ +.+++++.++||.||+|++|+
T Consensus 455 i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~ 534 (613)
T KOG0061|consen 455 IVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYL 534 (613)
T ss_pred HHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHH
Confidence 999999987765322 222 233333444667777665542 22322221 2222 234677888999999999999
Q ss_pred cHHHHHHHHHHHhcccc--cCCceec-ccc-----ccccccccccCCchhhHHHHHHHHHHHHHHHHHHHHhhccC
Q 048718 1051 SYTKWALEAFVVSNAKR--YRGIWLI-TRC-----GALYSKGYDLNDFFPGLMRLILAGILSRTIAFFCMITLQKN 1118 (1118)
Q Consensus 1051 S~~rYa~Eal~ine~~~--y~g~~~~-~~c-----~~L~~~G~~~~~~~~~i~iL~~~~v~fRvlayi~L~~~~k~ 1118 (1118)
||+||++||+++|++.. +...... ..| ..+...+++..+.|.|+++|++++++||+++|++|++..|+
T Consensus 535 S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~ 610 (613)
T KOG0061|consen 535 SYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKR 610 (613)
T ss_pred hHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999998652 1110000 122 23667889889999999999999999999999999987764
No 2
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.8e-83 Score=784.42 Aligned_cols=564 Identities=27% Similarity=0.406 Sum_probs=424.5
Q ss_pred EEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcC
Q 048718 515 FKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQ 594 (1118)
Q Consensus 515 ~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Q 594 (1118)
.+|+++.|. ++++|+|||+++++||++||+||||||||||||+|+|+.++...+|+|.+||++... ..++.+|||+|
T Consensus 71 ~~~l~~~~~--~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q 147 (659)
T PLN03211 71 ISDETRQIQ--ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK-QILKRTGFVTQ 147 (659)
T ss_pred cccccccCC--CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch-hhccceEEECc
Confidence 456666663 467999999999999999999999999999999999998742359999999998643 34567999999
Q ss_pred CCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCE
Q 048718 595 DDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSL 674 (1118)
Q Consensus 595 d~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~l 674 (1118)
++.+++.+||+|||.|++.++.+....++++.++++++++.+||.+..|+++|+...++|||||||||+||++|+.+|+|
T Consensus 148 ~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~i 227 (659)
T PLN03211 148 DDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 227 (659)
T ss_pred ccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCE
Confidence 99999999999999998876655445566666789999999999999999999888899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHHHHHHhcCCCCC
Q 048718 675 LILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVEEYFASLGITVP 754 (1118)
Q Consensus 675 LlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~~yf~~lG~~~p 754 (1118)
|||||||+|||+.++.++++.|++++++|+|||+++||++..+++++|++++|.+ |++++.|+++++.+||+++|+.||
T Consensus 228 LlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~-G~iv~~G~~~~~~~~f~~~G~~~P 306 (659)
T PLN03211 228 LILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSE-GRCLFFGKGSDAMAYFESVGFSPS 306 (659)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecC-CcEEEECCHHHHHHHHHHCCCCCC
Confidence 9999999999999999999999999888999999999998767899999999975 699999999999999999999999
Q ss_pred CCCCchhHHHHHhhccccCCCCCCCCccccchhhhccCCCCCchhhHHHHhhhcccccccccccccCCcchhhccchhhH
Q 048718 755 DRINPPDYFIDILEGIVKPSSSSGFDYKELPVRWMLHNGYSVPMDMLQSIEGMSASVAEHSSQEINDDSSEVQSFAGEFW 834 (1118)
Q Consensus 755 ~~~n~aDfl~d~~~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 834 (1118)
.+.||+||++|++....... +....+.+. ......+.... .... .... . +
T Consensus 307 ~~~NpADf~ldv~~~~~~~~---~~~~~~~~~---------~~~~l~~~~~~---~~~~----------~~~~----~-~ 356 (659)
T PLN03211 307 FPMNPADFLLDLANGVCQTD---GVSEREKPN---------VKQSLVASYNT---LLAP----------KVKA----A-I 356 (659)
T ss_pred CCCCHHHHHHHHcCccccCC---Cccccccch---------HHHHHHHHHHh---hccH----------HHHH----H-H
Confidence 99999999999986532110 000000000 00000000000 0000 0000 0 0
Q ss_pred HHHHhhhhcchhhhhhhccccC-CCCcccCCchhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCc--c
Q 048718 835 QDIKCNAAHRKDSIQRNFLNLG-DLSKRRTPGVFVQYRYFLGRVGKQRLREAKIQVVDYLILLLAGICIGTLAKVSD--E 911 (1118)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~~s~~~Q~~~L~~R~~~q~~Rd~~~~~~~~~~~ll~GlilG~l~~~~~--~ 911 (1118)
.. ................... .......++|++|+.+|++|.+++ +|++.+..+++++++++|+++|++|...+ .
T Consensus 357 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~~~~ 434 (659)
T PLN03211 357 EM-SHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSDFRD 434 (659)
T ss_pred hh-hhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 00 0000000000000000000 011224568999999999999988 89998889999999999999999984322 2
Q ss_pred ccchhhHHHHH-HHHHHHHhhhhHHHHHHhhhHHHhhcCCCCCH-HHHHHHHHHHHHHHHHHHHHhhhhhhccccCCcch
Q 048718 912 NFGATGYTHTV-IAVSLLCKIAALRSFSLDKLHYWRESASGMSS-LAFFLSKDTVDHFNTLIKPLVYLSMFYFFNNPRSS 989 (1118)
Q Consensus 912 ~~g~~g~~~~v-i~~~~~~~i~al~~F~~Er~vf~RE~~sG~y~-~aYflAk~l~dlp~~lv~piif~si~Y~m~g~~~~ 989 (1118)
.+++.|++|++ +.+.+++++++++.|+.||.+|+||+++|+|+ .+||+||.++|+|+.++.|++|.+|+|||+|++.+
T Consensus 435 ~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~ 514 (659)
T PLN03211 435 VQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPE 514 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCC
Confidence 34566777655 44466777899999999999999999999997 59999999999999999999999999999999876
Q ss_pred hHH---HHHHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHH----hhhcCCCcchhhhhccccccHHHHHHHHHH
Q 048718 990 VTD---NYLVLACLVYCVTGIAYIMAICFE-PGPAQLWSVLLPVVL----TLIATNNDNNRFVERISDLSYTKWALEAFV 1061 (1118)
Q Consensus 990 ~~~---~~~v~l~l~~~~~~lg~~lsi~~~-~~~a~l~s~l~p~v~----~l~~~~~~iP~~~~Wl~yiS~~rYa~Eal~ 1061 (1118)
+.. ++++++++.++..++|++++.++. ...|+.++.++.+++ +++++ +||.||+|++|+||++|||||++
T Consensus 515 ~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~ 592 (659)
T PLN03211 515 LGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLI 592 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHH
Confidence 542 223445555666688888877643 334444443332222 23443 79999999999999999999999
Q ss_pred HhcccccCC-----cee------ccccccccccccccCCchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 048718 1062 VSNAKRYRG-----IWL------ITRCGALYSKGYDLNDFFPGLMRLILAGILSRTIAFFCMITLQ 1116 (1118)
Q Consensus 1062 ine~~~y~g-----~~~------~~~c~~L~~~G~~~~~~~~~i~iL~~~~v~fRvlayi~L~~~~ 1116 (1118)
+||+..-.. .+. ...|..+...+++..+.|.++++|+++.++||+++|++|++.+
T Consensus 593 ~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 593 NVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAGQISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred HHhcCCccccccccCCCCcccCCCCCCccchhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 998642110 010 0124445555566667889999999999999999999998654
No 3
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=8.6e-83 Score=775.92 Aligned_cols=553 Identities=25% Similarity=0.408 Sum_probs=429.7
Q ss_pred cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCH
Q 048718 526 NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC-IMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTV 604 (1118)
Q Consensus 526 ~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~-~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV 604 (1118)
++.+|+|||+++++||+++|+|||||||||||++|+|+.++. ..+|+|.+||.+.+...+++.+|||+|++.+++.+||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 578999999999999999999999999999999999998642 2489999999987666678899999999999999999
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCcc-CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 048718 605 EENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVE-KRGISGGQRKRVNVGLEMVMEPSLLILDEPTSG 683 (1118)
Q Consensus 605 ~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~-~rgLSGGERQRVsIArALl~~P~lLlLDEPTsG 683 (1118)
+|||.|++.++.+....+++++++++++++.+||.+.+|+.+|+.. .++|||||||||+||++|+.+|+||+|||||+|
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 9999999988877666777777889999999999999999999753 689999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHHHHHHhcCCCCCCCCCchhHH
Q 048718 684 LDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVEEYFASLGITVPDRINPPDYF 763 (1118)
Q Consensus 684 LD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~~yf~~lG~~~p~~~n~aDfl 763 (1118)
||+.++..+++.|++++++|+|||+++||++.+++++||++++|.+ |+++|+|+++++.+||+++|+.||++.||+||+
T Consensus 197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~ 275 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAE-GRVAYLGSPDQAVPFFSDLGHPCPENYNPADFY 275 (617)
T ss_pred hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeC-CeEEEECCHHHHHHHHHHcCCCCCCCCChHHHH
Confidence 9999999999999999888999999999998778899999999975 699999999999999999999999999999999
Q ss_pred HHHhhccccCCCCCCCCccccchhhhccCCCCCchhhHHHHhhhcccccccccccccCCcchhhccchhhHHHHHhhhhc
Q 048718 764 IDILEGIVKPSSSSGFDYKELPVRWMLHNGYSVPMDMLQSIEGMSASVAEHSSQEINDDSSEVQSFAGEFWQDIKCNAAH 843 (1118)
Q Consensus 764 ~d~~~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 843 (1118)
+|+++...... ....+.. ++.. +....+.. ..+.-.........
T Consensus 276 ~~~~~~~~~~~---~~~~~~~-------------~~~~---~~~~~s~~-----------------~~~~~~~~~~~~~~ 319 (617)
T TIGR00955 276 VQVLAVIPGSE---NESRERI-------------EKIC---DSFAVSDI-----------------GRDMLVNTNLWSGK 319 (617)
T ss_pred HHHhhcCcccc---cchHHHH-------------HHHH---HHHhcchh-----------------hHHHHHHhhhhhcc
Confidence 99886432110 0000000 0000 00000000 00000000000000
Q ss_pred chhhhhhhccccCCCCcccCCchhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhccc-Cc---cccchhhHH
Q 048718 844 RKDSIQRNFLNLGDLSKRRTPGVFVQYRYFLGRVGKQRLREAKIQVVDYLILLLAGICIGTLAKV-SD---ENFGATGYT 919 (1118)
Q Consensus 844 ~~~~~~~~~~~~~~~~~r~~~s~~~Q~~~L~~R~~~q~~Rd~~~~~~~~~~~ll~GlilG~l~~~-~~---~~~g~~g~~ 919 (1118)
.. .... ........++.++|++|+.++++|.+++.+||+..+.+++++.+++|+++|++|.. .. +.++..|++
T Consensus 320 ~~-~~~~--~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~l 396 (617)
T TIGR00955 320 AG-GLVK--DSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGAL 396 (617)
T ss_pred cc-cccc--ccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Confidence 00 0000 00000112346789999999999999999999999999999999999999998843 22 234455655
Q ss_pred HHHH-HHHHHHhhhhHHHHHHhhhHHHhhcCCCCCH-HHHHHHHHHHHHHHHHHHHHhhhhhhccccCCcchhHHHH---
Q 048718 920 HTVI-AVSLLCKIAALRSFSLDKLHYWRESASGMSS-LAFFLSKDTVDHFNTLIKPLVYLSMFYFFNNPRSSVTDNY--- 994 (1118)
Q Consensus 920 ~~vi-~~~~~~~i~al~~F~~Er~vf~RE~~sG~y~-~aYflAk~l~dlp~~lv~piif~si~Y~m~g~~~~~~~~~--- 994 (1118)
|.++ .+.+.+++.+++.|+.||.+|+||+++|+|+ .+||+||.++|+|..++.+++|.+++|||+|++.++..+|
T Consensus 397 f~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~ 476 (617)
T TIGR00955 397 FLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFL 476 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHH
Confidence 5544 3455556788999999999999999999997 5999999999999999999999999999999988764332
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHH----HhhhcCCCcchhhhhccccccHHHHHHHHHHHhcccccC
Q 048718 995 LVLACLVYCVTGIAYIMAICFEP-GPAQLWSVLLPVV----LTLIATNNDNNRFVERISDLSYTKWALEAFVVSNAKRYR 1069 (1118)
Q Consensus 995 ~v~l~l~~~~~~lg~~lsi~~~~-~~a~l~s~l~p~v----~~l~~~~~~iP~~~~Wl~yiS~~rYa~Eal~ine~~~y~ 1069 (1118)
++++++.++..+++++++.++.. ..|..++.++.++ .+++++.++||.||+|++|+||++|++||+++|||....
T Consensus 477 l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~ 556 (617)
T TIGR00955 477 FLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVD 556 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCc
Confidence 23344445666888888776543 3444433322222 235567789999999999999999999999999974311
Q ss_pred C-ce----eccccc-----cccccccccCCchhhHHHHHHHHHHHHHHHHHHHHhhccC
Q 048718 1070 G-IW----LITRCG-----ALYSKGYDLNDFFPGLMRLILAGILSRTIAFFCMITLQKN 1118 (1118)
Q Consensus 1070 g-~~----~~~~c~-----~L~~~G~~~~~~~~~i~iL~~~~v~fRvlayi~L~~~~k~ 1118 (1118)
. .+ ....|. .|..+|++.+++|.++++|++++++||+++|++|++..|+
T Consensus 557 ~~~c~~~~~~~~c~~~g~~~l~~~g~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~ 615 (617)
T TIGR00955 557 NIECTSANTTGPCPSSGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIRIRR 615 (617)
T ss_pred cccccCcCcCCCCCcChHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1 00 011242 3667899888999999999999999999999999876553
No 4
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.5e-78 Score=788.71 Aligned_cols=559 Identities=23% Similarity=0.388 Sum_probs=432.2
Q ss_pred eEEEEEeEEEEEcC-----------CcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEe
Q 048718 511 IEVAFKDLTITLKG-----------KNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKV 579 (1118)
Q Consensus 511 ~~l~~knLs~~~~~-----------~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~ 579 (1118)
..+.|+||++.++. +++++|+|||+.+++||+++||||||||||||||+|+|+.++++.+|+|.+||.+
T Consensus 866 ~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred ceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 47999999999852 2347999999999999999999999999999999999998654579999999987
Q ss_pred cChhhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 048718 580 ASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQR 659 (1118)
Q Consensus 580 ~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGER 659 (1118)
.....+++.+|||+|++.+++.+||+|||.|++.++.+...++.++.+.++++++.+||.+.+|+.+|...+++||||||
T Consensus 946 ~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGer 1025 (1470)
T PLN03140 946 KKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQR 1025 (1470)
T ss_pred CChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHH
Confidence 65445677899999999999999999999999887766555666667789999999999999999999877789999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecCh
Q 048718 660 KRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPV 739 (1118)
Q Consensus 660 QRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~ 739 (1118)
|||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++||++..+++.||++++|.+||+++|+|++
T Consensus 1026 kRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~ 1105 (1470)
T PLN03140 1026 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPL 1105 (1470)
T ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCc
Confidence 99999999999999999999999999999999999999999889999999999997778999999999877899999996
Q ss_pred ----hhHHHHHHhc-CC-CCCCCCCchhHHHHHhhccccCCCCCCCCccccchhhhccCCCCCchhhHHHHhhhcccccc
Q 048718 740 ----KKVEEYFASL-GI-TVPDRINPPDYFIDILEGIVKPSSSSGFDYKELPVRWMLHNGYSVPMDMLQSIEGMSASVAE 813 (1118)
Q Consensus 740 ----~~l~~yf~~l-G~-~~p~~~n~aDfl~d~~~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1118)
+++.+||+++ |. .||+..|||||++|++...... . ..+++...|.....+ .+..+..
T Consensus 1106 ~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~----~-~~~d~~~~~~~s~~~------~~~~~~~------ 1168 (1470)
T PLN03140 1106 GRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV----K-LGIDFAEHYKSSSLY------QRNKALV------ 1168 (1470)
T ss_pred ccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc----c-ccchHHHHHhccHHH------HHHHHHH------
Confidence 5789999997 66 4999999999999987532110 0 011222223211100 0000000
Q ss_pred cccccccCCcchhhccchhhHHHHHhhhhcchhhhhhhccccCCCCcccCCchhHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 048718 814 HSSQEINDDSSEVQSFAGEFWQDIKCNAAHRKDSIQRNFLNLGDLSKRRTPGVFVQYRYFLGRVGKQRLREAKIQVVDYL 893 (1118)
Q Consensus 814 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~s~~~Q~~~L~~R~~~q~~Rd~~~~~~~~~ 893 (1118)
..+.. .... ........++.+++++|++++++|.+++.+|||.+..++++
T Consensus 1169 ---------------------~~~~~----~~~~-----~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~ 1218 (1470)
T PLN03140 1169 ---------------------KELST----PPPG-----ASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFF 1218 (1470)
T ss_pred ---------------------HHhcc----CCCC-----ccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHH
Confidence 00000 0000 00000123456789999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcc-cCcc------ccchhhHHHHHH-HHHHHHhhhhHHHHHHhhhHHHhhcCCCCCH-HHHHHHHHHH
Q 048718 894 ILLLAGICIGTLAK-VSDE------NFGATGYTHTVI-AVSLLCKIAALRSFSLDKLHYWRESASGMSS-LAFFLSKDTV 964 (1118)
Q Consensus 894 ~~ll~GlilG~l~~-~~~~------~~g~~g~~~~vi-~~~~~~~i~al~~F~~Er~vf~RE~~sG~y~-~aYflAk~l~ 964 (1118)
+.+++|+++|++|. .+++ .++..|.+|..+ .+++....+.++.|..||.+|+||+++|+|+ .+|++|+.++
T Consensus 1219 ~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~ 1298 (1470)
T PLN03140 1219 FTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVC 1298 (1470)
T ss_pred HHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHH
Confidence 99999999999983 3221 223455555433 3344455677899999999999999999997 5999999999
Q ss_pred HHHHHHHHHHhhhhhhccccCCcchhHHH---HHHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHH----HHHHhhhcC
Q 048718 965 DHFNTLIKPLVYLSMFYFFNNPRSSVTDN---YLVLACLVYCVTGIAYIMAICFE-PGPAQLWSVLL----PVVLTLIAT 1036 (1118)
Q Consensus 965 dlp~~lv~piif~si~Y~m~g~~~~~~~~---~~v~l~l~~~~~~lg~~lsi~~~-~~~a~l~s~l~----p~v~~l~~~ 1036 (1118)
|+|..++.+++|.+|+|||+|++.++..+ ++++++..++.+++|.+++.++. ...|..++.++ .++.+++++
T Consensus 1299 eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~ 1378 (1470)
T PLN03140 1299 EIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIP 1378 (1470)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccC
Confidence 99999999999999999999987654322 22333334556677777665543 23333333222 222345677
Q ss_pred CCcchhhhhccccccHHHHHHHHHHHhcccccCCcee------ccccc--cccccccccCCchhhHHHHHHHHHHHHHHH
Q 048718 1037 NNDNNRFVERISDLSYTKWALEAFVVSNAKRYRGIWL------ITRCG--ALYSKGYDLNDFFPGLMRLILAGILSRTIA 1108 (1118)
Q Consensus 1037 ~~~iP~~~~Wl~yiS~~rYa~Eal~ine~~~y~g~~~------~~~c~--~L~~~G~~~~~~~~~i~iL~~~~v~fRvla 1108 (1118)
.++||.||+|++|+||++|+++|++.|++........ ...|. .+..+||+.++.|.+++||+++.++|++++
T Consensus 1379 ~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~ 1458 (1470)
T PLN03140 1379 RPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIF 1458 (1470)
T ss_pred hHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHH
Confidence 8999999999999999999999999998642211100 01121 245689999999999999999999999999
Q ss_pred HHHHHhhc
Q 048718 1109 FFCMITLQ 1116 (1118)
Q Consensus 1109 yi~L~~~~ 1116 (1118)
++++++++
T Consensus 1459 ~~~~~~~~ 1466 (1470)
T PLN03140 1459 AFCIRTLN 1466 (1470)
T ss_pred HHHHHHhh
Confidence 99998764
No 5
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=4.6e-78 Score=785.70 Aligned_cols=563 Identities=18% Similarity=0.262 Sum_probs=418.7
Q ss_pred cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--CCceeEEEECCEecCh--hhhcCeEEEEcCCCCCCCC
Q 048718 526 NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPG--CIMSGTILVNGKVASI--QSYKRIIGFVPQDDIVHGN 601 (1118)
Q Consensus 526 ~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~--~~~sG~I~inG~~~~~--~~~r~~IgyV~Qd~~l~~~ 601 (1118)
+++||+|||+.+++||+++|+||||||||||||+|+|+.++ .+.+|+|.+||++... ..+|+.++||+|++.+++.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 35799999999999999999999999999999999999742 2579999999987642 2356779999999999999
Q ss_pred CCHHHHHHHHHhhccCC----CCCHHHHHH-HHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 048718 602 LTVEENLWFSARCRLSA----DLPKAEKVL-VVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLI 676 (1118)
Q Consensus 602 LTV~EnL~f~a~lr~~~----~~~~~~~~~-~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLl 676 (1118)
+||+|||.|+++++.+. +..+.+..+ .++++++.+||.+.+|+++|+..+++|||||||||+||++|+.+|+||+
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 99999999998876542 233444333 3577899999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHHHHHHhcCCCCCC
Q 048718 677 LDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVEEYFASLGITVPD 755 (1118)
Q Consensus 677 LDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~~yf~~lG~~~p~ 755 (1118)
|||||+|||+.++.++++.|++++++ |+|||+++||++..++++||++++|.+ |+++|+|+++++.+||+++|+.||+
T Consensus 233 lDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~-G~iv~~G~~~~~~~yF~~lG~~~p~ 311 (1394)
T TIGR00956 233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYE-GYQIYFGPADKAKQYFEKMGFKCPD 311 (1394)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeC-CeEEEECCHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999864 999999999998788999999999986 6899999999999999999999999
Q ss_pred CCCchhHHHHHhhccccCCCCC-----CCCccccchhhhccCCCCCchhhHHHHhhhcccccccccccccCCcchhhccc
Q 048718 756 RINPPDYFIDILEGIVKPSSSS-----GFDYKELPVRWMLHNGYSVPMDMLQSIEGMSASVAEHSSQEINDDSSEVQSFA 830 (1118)
Q Consensus 756 ~~n~aDfl~d~~~~~~~~~~~~-----~~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 830 (1118)
+.||+||++|+.....+....+ ....+++...|..+..+ .++.+..+..... ... ...
T Consensus 312 ~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~---~~~~~~~~~~~~~-------~~~-------~~~ 374 (1394)
T TIGR00956 312 RQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEY---AQLMKEIDEYLDR-------CSE-------SDT 374 (1394)
T ss_pred CCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHH---HHHHHHHHHHhhh-------ccc-------hhh
Confidence 9999999999865432111000 00111111222211100 0000000000000 000 000
Q ss_pred hhhHHHHHhhhhcchhhhhhhccccCCCCcccCCchhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhccc-C
Q 048718 831 GEFWQDIKCNAAHRKDSIQRNFLNLGDLSKRRTPGVFVQYRYFLGRVGKQRLREAKIQVVDYLILLLAGICIGTLAKV-S 909 (1118)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~s~~~Q~~~L~~R~~~q~~Rd~~~~~~~~~~~ll~GlilG~l~~~-~ 909 (1118)
. ..+.+.. . . ...+..........++++|+++|++|.+++.+||+..+.+++++.+++|+++|++|.. .
T Consensus 375 ~---~~~~~~~-~-----~-~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~ 444 (1394)
T TIGR00956 375 K---EAYRESH-V-----A-KQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLP 444 (1394)
T ss_pred H---HHHHHHH-H-----h-hhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 0 0000000 0 0 0000011123456789999999999999999999999999999999999999999843 3
Q ss_pred c---cccchhhHHHHHHHHHHHHhhhhHHHHHHhhhHHHhhcCCCCCH-HHHHHHHHHHHHHHHHHHHHhhhhhhccccC
Q 048718 910 D---ENFGATGYTHTVIAVSLLCKIAALRSFSLDKLHYWRESASGMSS-LAFFLSKDTVDHFNTLIKPLVYLSMFYFFNN 985 (1118)
Q Consensus 910 ~---~~~g~~g~~~~vi~~~~~~~i~al~~F~~Er~vf~RE~~sG~y~-~aYflAk~l~dlp~~lv~piif~si~Y~m~g 985 (1118)
+ ..+...|.+|+++.+..+..+..+..|..||.+|+||+.+|+|+ .+|++|+.++|+|..++.+++|.+|+|||+|
T Consensus 445 ~~~~~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~g 524 (1394)
T TIGR00956 445 KNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVN 524 (1394)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCC
Confidence 2 23455666665554444444566777888999999999999997 5999999999999999999999999999999
Q ss_pred CcchhHHHH---HHHHHHHHHHHHHHHHHHHhcCc-hhHHHHHHHHHH----HHhhhcCCCcchhhhhccccccHHHHHH
Q 048718 986 PRSSVTDNY---LVLACLVYCVTGIAYIMAICFEP-GPAQLWSVLLPV----VLTLIATNNDNNRFVERISDLSYTKWAL 1057 (1118)
Q Consensus 986 ~~~~~~~~~---~v~l~l~~~~~~lg~~lsi~~~~-~~a~l~s~l~p~----v~~l~~~~~~iP~~~~Wl~yiS~~rYa~ 1057 (1118)
++.++..+| ++++++.++..+++.+++.++.. ..|...+.++.+ +.+++++.++||.||+|++|+||++|||
T Consensus 525 l~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yaf 604 (1394)
T TIGR00956 525 FRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAF 604 (1394)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHH
Confidence 987654322 23344444555677777765432 334433332222 2245677899999999999999999999
Q ss_pred HHHHHhcccc--cCCc--------ee-----ccccc---------------ccc-ccccccCCchhhHHHHHHHHHHHHH
Q 048718 1058 EAFVVSNAKR--YRGI--------WL-----ITRCG---------------ALY-SKGYDLNDFFPGLMRLILAGILSRT 1106 (1118)
Q Consensus 1058 Eal~ine~~~--y~g~--------~~-----~~~c~---------------~L~-~~G~~~~~~~~~i~iL~~~~v~fRv 1106 (1118)
||+++|||.. |... +. ...|. .|. .+||+.++.|.+++||+++.++|++
T Consensus 605 eal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~ 684 (1394)
T TIGR00956 605 ESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFF 684 (1394)
T ss_pred HHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHH
Confidence 9999999743 2110 00 11241 133 3578888999999999999999999
Q ss_pred HHHHHHHhhc
Q 048718 1107 IAFFCMITLQ 1116 (1118)
Q Consensus 1107 layi~L~~~~ 1116 (1118)
+++++|.+.+
T Consensus 685 ~~~l~l~~~~ 694 (1394)
T TIGR00956 685 VYILLTEFNK 694 (1394)
T ss_pred HHHHHHHhcc
Confidence 9999998765
No 6
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2e-77 Score=779.77 Aligned_cols=560 Identities=26% Similarity=0.362 Sum_probs=429.8
Q ss_pred eEEEEEeEEEEEc--CCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CceeEEEECCEecChhhhcC
Q 048718 511 IEVAFKDLTITLK--GKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC-IMSGTILVNGKVASIQSYKR 587 (1118)
Q Consensus 511 ~~l~~knLs~~~~--~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~-~~sG~I~inG~~~~~~~~r~ 587 (1118)
..++++||+++++ ++++.+|+|||+++++||++||+||||||||||||+|+|+.+++ +++|+|.+||++.. ..+++
T Consensus 758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~-~~~~~ 836 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD-SSFQR 836 (1394)
T ss_pred ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC-hhhhc
Confidence 3589999999985 23468999999999999999999999999999999999998632 46899999999875 35678
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
.+|||+|++.+++.+||+|||.|++.++.+...++.++.++++++++.+||.+.+|+.+|+. ..+|||||||||+||+|
T Consensus 837 ~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~-~~~LSgGqrqRl~Ia~a 915 (1394)
T TIGR00956 837 SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVP-GEGLNVEQRKRLTIGVE 915 (1394)
T ss_pred ceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCC-CCCCCHHHhhHHHHHHH
Confidence 89999999999999999999999988876655666677778999999999999999999853 34799999999999999
Q ss_pred HhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecCh----hhH
Q 048718 668 MVMEPS-LLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPV----KKV 742 (1118)
Q Consensus 668 Ll~~P~-lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~----~~l 742 (1118)
|+.+|+ ||||||||+|||+.++..+++.|++++++|+|||+++||++..+++.+|++++|.+||+++|+|++ +++
T Consensus 916 L~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~ 995 (1394)
T TIGR00956 916 LVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTI 995 (1394)
T ss_pred HHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchH
Confidence 999997 999999999999999999999999998889999999999997777889999999987799999997 568
Q ss_pred HHHHHhcCC-CCCCCCCchhHHHHHhhccccCCCCCCCCccccchhhhccCCCCCchhhHHHHhhhcccccccccccccC
Q 048718 743 EEYFASLGI-TVPDRINPPDYFIDILEGIVKPSSSSGFDYKELPVRWMLHNGYSVPMDMLQSIEGMSASVAEHSSQEIND 821 (1118)
Q Consensus 743 ~~yf~~lG~-~~p~~~n~aDfl~d~~~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (1118)
.+||+..|+ .||++.|||||++|++...... ...+++...|.....+ .+..+..+...
T Consensus 996 ~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~-----~~~~~~~~~~~~s~~~---~~~~~~~~~~~------------- 1054 (1394)
T TIGR00956 996 INYFEKHGAPKCPEDANPAEWMLEVIGAAPGA-----HANQDYHEVWRNSSEY---QAVKNELDRLE------------- 1054 (1394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHhhccccc-----chhccHHHHHhcCHHH---HHHHHHHHHhh-------------
Confidence 999999996 9999999999999988643211 0112233333211100 00000000000
Q ss_pred CcchhhccchhhHHHHHhhhhcchhhhhhhccccCCCCcccCCchhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 048718 822 DSSEVQSFAGEFWQDIKCNAAHRKDSIQRNFLNLGDLSKRRTPGVFVQYRYFLGRVGKQRLREAKIQVVDYLILLLAGIC 901 (1118)
Q Consensus 822 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~s~~~Q~~~L~~R~~~q~~Rd~~~~~~~~~~~ll~Gli 901 (1118)
... .... . ........++.+++++|+++|++|.+++.+||+.++..++++++++|++
T Consensus 1055 -----------------~~~--~~~~-~---~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~ 1111 (1394)
T TIGR00956 1055 -----------------AEL--SKAE-D---DNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALF 1111 (1394)
T ss_pred -----------------ccc--ccCc-c---ccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 000 0000 0 0000011345678999999999999999999999999999999999999
Q ss_pred HHhhc-ccCcc---ccchhhHHHHHHHHHHHHhhhhHHHHHHhhhHH-HhhcCCCCCHH-HHHHHHHHHHHHHHHHHHHh
Q 048718 902 IGTLA-KVSDE---NFGATGYTHTVIAVSLLCKIAALRSFSLDKLHY-WRESASGMSSL-AFFLSKDTVDHFNTLIKPLV 975 (1118)
Q Consensus 902 lG~l~-~~~~~---~~g~~g~~~~vi~~~~~~~i~al~~F~~Er~vf-~RE~~sG~y~~-aYflAk~l~dlp~~lv~pii 975 (1118)
+|++| +.+++ ..+..|.+|+++.+..+....+++.|+.||.+| +||+++|+|+. +||+|+.++|+|+.++.+++
T Consensus 1112 ~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~i 1191 (1394)
T TIGR00956 1112 IGFTFFKVGTSLQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTI 1191 (1394)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997 33332 234555555444333333467788999988775 89999999975 99999999999999999999
Q ss_pred hhhhhccccCCcchh----------HHHHHHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHH----HhhhcCCCcc
Q 048718 976 YLSMFYFFNNPRSSV----------TDNYLVLACLVYCVTGIAYIMAICFE-PGPAQLWSVLLPVV----LTLIATNNDN 1040 (1118)
Q Consensus 976 f~si~Y~m~g~~~~~----------~~~~~v~l~l~~~~~~lg~~lsi~~~-~~~a~l~s~l~p~v----~~l~~~~~~i 1040 (1118)
|.+++|||+|++.++ ..+++++++..++..++|++++.++. ...|..+..++.++ .+++++.++|
T Consensus 1192 f~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~i 1271 (1394)
T TIGR00956 1192 FFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRM 1271 (1394)
T ss_pred HHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHC
Confidence 999999999987543 22333444444556677887776543 33344333222222 2345677899
Q ss_pred hhhhhccccccHHHHHHHHHHHhcccccCCce-----------------------------------eccccc-------
Q 048718 1041 NRFVERISDLSYTKWALEAFVVSNAKRYRGIW-----------------------------------LITRCG------- 1078 (1118)
Q Consensus 1041 P~~~~Wl~yiS~~rYa~Eal~ine~~~y~g~~-----------------------------------~~~~c~------- 1078 (1118)
|.||+|++|+||++|++||++.|++..-.-.+ ....|.
T Consensus 1272 p~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~ 1351 (1394)
T TIGR00956 1272 PGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYT 1351 (1394)
T ss_pred cHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCH
Confidence 99999999999999999999999864211000 001241
Q ss_pred --cccccccccCCchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 048718 1079 --ALYSKGYDLNDFFPGLMRLILAGILSRTIAFFCMITLQK 1117 (1118)
Q Consensus 1079 --~L~~~G~~~~~~~~~i~iL~~~~v~fRvlayi~L~~~~k 1117 (1118)
.|...|++.++.|.|++||+++.+++ ++++++|++..|
T Consensus 1352 ~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~~~r 1391 (1394)
T TIGR00956 1352 NDFLEPISSKYSGRWRNFGIFIAFIFFN-IIATVFFYWLAR 1391 (1394)
T ss_pred HHHHHHcCCcccccccchhhhhHHHHHH-HHHHHhhheEEE
Confidence 35567888899999999999999888 999999987654
No 7
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.1e-76 Score=771.19 Aligned_cols=551 Identities=21% Similarity=0.291 Sum_probs=411.4
Q ss_pred ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHH
Q 048718 527 KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC-IMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVE 605 (1118)
Q Consensus 527 k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~-~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~ 605 (1118)
++||+||||.|++||+++|+||||||||||||+|+|++++. ..+|+|.+||++......++.++||+|++.+++++||+
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 257 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHH
Confidence 56999999999999999999999999999999999998731 23999999999875434467899999999999999999
Q ss_pred HHHHHHHhhccCCC-------CCHHHH------------------------HHHHHHHHHHcCCCccccccccCccCCCC
Q 048718 606 ENLWFSARCRLSAD-------LPKAEK------------------------VLVVERVIESLGLQHIRDSLVGTVEKRGI 654 (1118)
Q Consensus 606 EnL~f~a~lr~~~~-------~~~~~~------------------------~~~v~~lL~~lgL~~~~dt~vg~~~~rgL 654 (1118)
|||.|+++++.... ..+.++ ...++.+|+.+||++++|+.+|+..+++|
T Consensus 258 EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rgl 337 (1470)
T PLN03140 258 ETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGI 337 (1470)
T ss_pred HHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCC
Confidence 99999987653211 111111 12367899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEecCcEE
Q 048718 655 SGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAKGGVI 733 (1118)
Q Consensus 655 SGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~i 733 (1118)
||||||||+||++|+.+|++|||||||+|||+.++.++++.|+++++ .|+|+|+++||+..+++++||++++|.+ |++
T Consensus 338 SGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~-G~i 416 (1470)
T PLN03140 338 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE-GQI 416 (1470)
T ss_pred CcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC-ceE
Confidence 99999999999999999999999999999999999999999999986 5999999999998788999999999986 699
Q ss_pred EEecChhhHHHHHHhcCCCCCCCCCchhHHHHHhhccccCCCCCCCCccccchhhhccC-CC--CCchhhHHHHhhhccc
Q 048718 734 VYHGPVKKVEEYFASLGITVPDRINPPDYFIDILEGIVKPSSSSGFDYKELPVRWMLHN-GY--SVPMDMLQSIEGMSAS 810 (1118)
Q Consensus 734 v~~G~~~~l~~yf~~lG~~~p~~~n~aDfl~d~~~~~~~~~~~~~~~~~~l~~~w~~~~-~~--~~~~~~~~~~~~~~~~ 810 (1118)
+|+|+++++.+||+++|+.||++.|||||++|+.....+. ..|.... .+ ..+++..+ ....+
T Consensus 417 vy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~------------~~~~~~~~p~~~~~~~~~~~---~~~~s 481 (1470)
T PLN03140 417 VYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQE------------QYWADRNKPYRYISVSEFAE---RFKSF 481 (1470)
T ss_pred EEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhh------------hhhhccCCccccCCHHHHHH---HHHhc
Confidence 9999999999999999999999999999999987642110 0121110 00 00111111 10000
Q ss_pred ccccccccccCCcchhhccchhhHHHHHhhhhcchhhhhhhccccCCCCcccCCchhHHHHHHHHHHhhhhhhhhHHHHH
Q 048718 811 VAEHSSQEINDDSSEVQSFAGEFWQDIKCNAAHRKDSIQRNFLNLGDLSKRRTPGVFVQYRYFLGRVGKQRLREAKIQVV 890 (1118)
Q Consensus 811 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~s~~~Q~~~L~~R~~~q~~Rd~~~~~~ 890 (1118)
. ..+++.+..+...++.... +.......+..+++.|++.+++|.++..+||+.++++
T Consensus 482 ~---------------------~~~~~~~~~~~~~~~~~~~--~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~ 538 (1470)
T PLN03140 482 H---------------------VGMQLENELSVPFDKSQSH--KAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVF 538 (1470)
T ss_pred H---------------------HHHHHHHHHhhhhhhhhcc--cccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 0 0000000000000000000 0001123456788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccC----ccc---cchhhHHHHHHHHHHHHhhhhHHHHHHhhhHHHhhcCCCCCH-HHHHHHHH
Q 048718 891 DYLILLLAGICIGTLAKVS----DEN---FGATGYTHTVIAVSLLCKIAALRSFSLDKLHYWRESASGMSS-LAFFLSKD 962 (1118)
Q Consensus 891 ~~~~~ll~GlilG~l~~~~----~~~---~g~~g~~~~vi~~~~~~~i~al~~F~~Er~vf~RE~~sG~y~-~aYflAk~ 962 (1118)
++++.+++|+++|++|... ... +...|.+|+.+.+..+..++.+..|..||++|+||+++++|+ .+|++|+.
T Consensus 539 r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~ 618 (1470)
T PLN03140 539 KTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTF 618 (1470)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHH
Confidence 9999999999999998322 111 112344343333334455678899999999999999999996 69999999
Q ss_pred HHHHHHHHHHHHhhhhhhccccCCcchhHHHHH---HHHHHHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHH----Hhhh
Q 048718 963 TVDHFNTLIKPLVYLSMFYFFNNPRSSVTDNYL---VLACLVYCVTGIAYIMAICFEP-GPAQLWSVLLPVV----LTLI 1034 (1118)
Q Consensus 963 l~dlp~~lv~piif~si~Y~m~g~~~~~~~~~~---v~l~l~~~~~~lg~~lsi~~~~-~~a~l~s~l~p~v----~~l~ 1034 (1118)
++++|..++.+++|.+|+|||+|++.++..||. +++++.++..+++.+++.+... ..|+..+.++.++ .+++
T Consensus 619 l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~ 698 (1470)
T PLN03140 619 LLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFI 698 (1470)
T ss_pred HHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccce
Confidence 999999999999999999999999877643332 2333334455666666655432 3344444332222 2456
Q ss_pred cCCCcchhhhhccccccHHHHHHHHHHHhcccc--cCCce-----eccccccccccccccCCc--hhhHHHHHHHHHHHH
Q 048718 1035 ATNNDNNRFVERISDLSYTKWALEAFVVSNAKR--YRGIW-----LITRCGALYSKGYDLNDF--FPGLMRLILAGILSR 1105 (1118)
Q Consensus 1035 ~~~~~iP~~~~Wl~yiS~~rYa~Eal~ine~~~--y~g~~-----~~~~c~~L~~~G~~~~~~--~~~i~iL~~~~v~fR 1105 (1118)
++.++||.||+|++|+||++||+||+++|||.. |.+.. .......|..+||..++. |.++++|+++.++|+
T Consensus 699 i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~ 778 (1470)
T PLN03140 699 LPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFN 778 (1470)
T ss_pred echHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHH
Confidence 778999999999999999999999999999631 22110 001112466778876554 677999999999999
Q ss_pred HHHHHHHHhhc
Q 048718 1106 TIAFFCMITLQ 1116 (1118)
Q Consensus 1106 vlayi~L~~~~ 1116 (1118)
+++|++|.+.+
T Consensus 779 ~l~~l~L~~~~ 789 (1470)
T PLN03140 779 VLFTLALTYLN 789 (1470)
T ss_pred HHHHHHHHhcC
Confidence 99999998765
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.3e-74 Score=708.25 Aligned_cols=552 Identities=28% Similarity=0.443 Sum_probs=425.5
Q ss_pred EEEEeEEEEEc--CCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEE
Q 048718 513 VAFKDLTITLK--GKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIG 590 (1118)
Q Consensus 513 l~~knLs~~~~--~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 590 (1118)
..++|+.+..+ ++++++|+||++-++||-++||||+|||||||||++|+|+...+..+|+|+|||.+.+...++|.+|
T Consensus 788 ~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~G 867 (1391)
T KOG0065|consen 788 FYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSG 867 (1391)
T ss_pred EEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccc
Confidence 45666666653 4567899999999999999999999999999999999999876678999999999987778999999
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
||.|+|.|.+.+||+|.|.|++.+|++.+++.+++.+.|+++++.|+|++.+|..||..+ .|||.+||||++||.+|+.
T Consensus 868 YvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA 946 (1391)
T KOG0065|consen 868 YVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVA 946 (1391)
T ss_pred eeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEec
Confidence 999999999999999999999999999999999999999999999999999999999977 9999999999999999999
Q ss_pred CC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhh----HHHH
Q 048718 671 EP-SLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKK----VEEY 745 (1118)
Q Consensus 671 ~P-~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~----l~~y 745 (1118)
+| .||+|||||||||+.++..|++.+|+++..|+||++++|||+..+++.||++++|.+||++||+||..+ +.+|
T Consensus 947 ~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~Y 1026 (1391)
T KOG0065|consen 947 NPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEY 1026 (1391)
T ss_pred CCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHH
Confidence 99 999999999999999999999999999999999999999999999999999999999999999999864 6789
Q ss_pred HHhcC-CCCCCCCCchhHHHHHhhccccCCCCCCCCccccchhhhccCCCCCchhhHHHHhhhcccccccccccccCCcc
Q 048718 746 FASLG-ITVPDRINPPDYFIDILEGIVKPSSSSGFDYKELPVRWMLHNGYSVPMDMLQSIEGMSASVAEHSSQEINDDSS 824 (1118)
Q Consensus 746 f~~lG-~~~p~~~n~aDfl~d~~~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (1118)
|++.| ..||...|||||++|++...... ..+ .+....|...+.+.. ..+.++.+..+
T Consensus 1027 Fes~~~~~~~~~~NPA~~mLevi~~~~~~----~~~-~D~a~~w~~S~e~k~---~~e~v~~l~~~-------------- 1084 (1391)
T KOG0065|consen 1027 FESIGGVKCISDENPAEWMLEVIGAGAEA----SLS-VDFAEIWKNSEEYKR---NKELVKELSQP-------------- 1084 (1391)
T ss_pred HHhcCCccCCCCCChHHHHHhhccccccc----ccC-ccHHHHHhccHHHHH---HHHHHHHHhcC--------------
Confidence 99986 79998889999999998643211 111 133344543322210 00101111000
Q ss_pred hhhccchhhHHHHHhhhhcchhhhhhhccccCCCCcccCCchhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh
Q 048718 825 EVQSFAGEFWQDIKCNAAHRKDSIQRNFLNLGDLSKRRTPGVFVQYRYFLGRVGKQRLREAKIQVVDYLILLLAGICIGT 904 (1118)
Q Consensus 825 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~s~~~Q~~~L~~R~~~q~~Rd~~~~~~~~~~~ll~GlilG~ 904 (1118)
... .........|..+|+|.|++.+++|.+.+.||+|.+++++++..+++|+++|+
T Consensus 1085 -----------------------~~~-~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf 1140 (1391)
T KOG0065|consen 1085 -----------------------PPG-FSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGF 1140 (1391)
T ss_pred -----------------------Ccc-CCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhhee
Confidence 000 00011123567789999999999999999999999999999999999999998
Q ss_pred hc-ccCccc---cchhhHHHHHHHHHHHHhhh-hHHHHHHhhhHHHhhcCCCCCH-HHHHHHHHHHHHHHHHHHHHhhhh
Q 048718 905 LA-KVSDEN---FGATGYTHTVIAVSLLCKIA-ALRSFSLDKLHYWRESASGMSS-LAFFLSKDTVDHFNTLIKPLVYLS 978 (1118)
Q Consensus 905 l~-~~~~~~---~g~~g~~~~vi~~~~~~~i~-al~~F~~Er~vf~RE~~sG~y~-~aYflAk~l~dlp~~lv~piif~s 978 (1118)
.| +.+... ++.+|..|+.+.++...+.+ ..+.+..||.+++||+++|||+ .+|++|..++|+|..++..++|.+
T Consensus 1141 ~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~ 1220 (1391)
T KOG0065|consen 1141 TFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFL 1220 (1391)
T ss_pred eeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhhe
Confidence 87 444333 34455556544333333333 4566678999999999999998 599999999999999999999999
Q ss_pred hhccccCCcchhHHHH-HHH--HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH-------HhhhcCCCcchhhhhccc
Q 048718 979 MFYFFNNPRSSVTDNY-LVL--ACLVYCVTGIAYIMAICFEPGPAQLWSVLLPVV-------LTLIATNNDNNRFVERIS 1048 (1118)
Q Consensus 979 i~Y~m~g~~~~~~~~~-~v~--l~l~~~~~~lg~~lsi~~~~~~a~l~s~l~p~v-------~~l~~~~~~iP~~~~Wl~ 1048 (1118)
++|+++|+...+..++ +++ ++...+.+.+|..+.. +.| +++.++++..++ .+++...+.||.||+|++
T Consensus 1221 ~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s-~tP-n~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy 1298 (1391)
T KOG0065|consen 1221 ITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVS-LTP-NLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMY 1298 (1391)
T ss_pred eeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCC-ChhHHHHHHHHHHHHHHHhcccccccccccceeeeee
Confidence 9999999876543211 111 1112223344443322 222 233333333332 234567889999999999
Q ss_pred cccHHHHHHHHHHHhcccccCCcee--------------ccccccccc------cccccCCchhhHHHHHHHHHHHHHHH
Q 048718 1049 DLSYTKWALEAFVVSNAKRYRGIWL--------------ITRCGALYS------KGYDLNDFFPGLMRLILAGILSRTIA 1108 (1118)
Q Consensus 1049 yiS~~rYa~Eal~ine~~~y~g~~~--------------~~~c~~L~~------~G~~~~~~~~~i~iL~~~~v~fRvla 1108 (1118)
|+||+.|-+++++.... .+... ...|+..++ .||..+.......+.+++.+++.+++
T Consensus 1299 ~lsP~ty~l~gli~~~~---~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~ 1375 (1391)
T KOG0065|consen 1299 YLSPVTYTLEGLISSQL---GDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLA 1375 (1391)
T ss_pred ecCcHHHHHHHHHHHHh---CCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHH
Confidence 99999999999998753 22110 113543332 23555544444556677888999999
Q ss_pred HHHHHhhc
Q 048718 1109 FFCMITLQ 1116 (1118)
Q Consensus 1109 yi~L~~~~ 1116 (1118)
.+++++.+
T Consensus 1376 ~f~~~y~~ 1383 (1391)
T KOG0065|consen 1376 AFNIKYLN 1383 (1391)
T ss_pred HHHHHHHH
Confidence 88887654
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.5e-66 Score=636.62 Aligned_cols=552 Identities=23% Similarity=0.367 Sum_probs=413.8
Q ss_pred cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-ceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCH
Q 048718 526 NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCI-MSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTV 604 (1118)
Q Consensus 526 ~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~-~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV 604 (1118)
...||+|+|+.++|||++.++||+||||||||++|+|.++... ..|+|.+||.+.+...-++.++|+.|+|.|+|.|||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 4579999999999999999999999999999999999986432 368999999987654447899999999999999999
Q ss_pred HHHHHHHHhhccCCCC----CHHHHH-HHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 048718 605 EENLWFSARCRLSADL----PKAEKV-LVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDE 679 (1118)
Q Consensus 605 ~EnL~f~a~lr~~~~~----~~~~~~-~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDE 679 (1118)
+|+|.|+++++.+..+ .+.++. +.++.+++.+||+|++||+||++..||+||||||||+||.+++.++++++|||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 9999999999887432 222222 26789999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHHHHHHhcCCCCCCCCC
Q 048718 680 PTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVEEYFASLGITVPDRIN 758 (1118)
Q Consensus 680 PTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~~yf~~lG~~~p~~~n 758 (1118)
+|+|||+.++.++++.||.+++. +.|+++++||++.+++++||+|++|.+ |++||+||.+++++||+++|+.||+|.+
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~d~~~~yFe~~Gf~cP~r~~ 365 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPRDEVLPYFEDMGFKCPPRKG 365 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccHHHHHHHHHhcCccCCCccC
Confidence 99999999999999999999964 899999999999999999999999997 5999999999999999999999999999
Q ss_pred chhHHHHHhhccccCCCCCCCCccccchhhhcc-CCCC-Cc-hhhHHHHhhhcccccccccccccCCcchhhccchhhHH
Q 048718 759 PPDYFIDILEGIVKPSSSSGFDYKELPVRWMLH-NGYS-VP-MDMLQSIEGMSASVAEHSSQEINDDSSEVQSFAGEFWQ 835 (1118)
Q Consensus 759 ~aDfl~d~~~~~~~~~~~~~~~~~~l~~~w~~~-~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 835 (1118)
++||++++..+..... -|... ..++ .+ .++.+...+.+ ...
T Consensus 366 ~ADfLt~vts~k~~~~------------~~~~~~~~~~~~~~~ef~~~~~~s~------------------------~~~ 409 (1391)
T KOG0065|consen 366 TADFLTEVTSKKDQEQ------------YWNKRSKPYPYTSVSEFAEYFLNSE------------------------DYA 409 (1391)
T ss_pred HHHHHHHhhcCccccc------------cccccCCCcccCCHHHHHHHHhcch------------------------hhH
Confidence 9999999987321110 11110 0111 11 11111111000 000
Q ss_pred HHHhhhhcchhhhhhhccccCCCCcccCCchhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCc--ccc
Q 048718 836 DIKCNAAHRKDSIQRNFLNLGDLSKRRTPGVFVQYRYFLGRVGKQRLREAKIQVVDYLILLLAGICIGTLAKVSD--ENF 913 (1118)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~s~~~Q~~~L~~R~~~q~~Rd~~~~~~~~~~~ll~GlilG~l~~~~~--~~~ 913 (1118)
.+...++...++... .+....+.+...+.|.|+++++.|.++...||..+....+++.+++++++|++|...+ .+.
T Consensus 410 ~l~~~l~~~~~~~k~--~~~al~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~ 487 (1391)
T KOG0065|consen 410 KLKKELSKPYDKSKK--HKAALVSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTS 487 (1391)
T ss_pred HHHHHhcchhhhhhc--cchhhcCCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccc
Confidence 000000000000000 0011223556778999999999999999999999999999999999999999984322 111
Q ss_pred ---chhhHHHHHHHHHHHHhhhhHHHHHHhhhHHHhhcCCCCCH-HHHHHHHHHHHHHHHHHHHHhhhhhhccccCCcch
Q 048718 914 ---GATGYTHTVIAVSLLCKIAALRSFSLDKLHYWRESASGMSS-LAFFLSKDTVDHFNTLIKPLVYLSMFYFFNNPRSS 989 (1118)
Q Consensus 914 ---g~~g~~~~vi~~~~~~~i~al~~F~~Er~vf~RE~~sG~y~-~aYflAk~l~dlp~~lv~piif~si~Y~m~g~~~~ 989 (1118)
...+.+|..+.+..+..++-+..-.+.|+||+++|...+|+ +||.++..++++|+.++..++|.+|+||++|+...
T Consensus 488 ~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~ 567 (1391)
T KOG0065|consen 488 GGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRN 567 (1391)
T ss_pred cchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcc
Confidence 12233333333333444566666777899999999999986 79999999999999999999999999999998877
Q ss_pred hHHHHHHHHHHH---HHHHHHHHHHHHhcC-chhHHHHHHHHHHHH----hhhcCCCcchhhhhccccccHHHHHHHHHH
Q 048718 990 VTDNYLVLACLV---YCVTGIAYIMAICFE-PGPAQLWSVLLPVVL----TLIATNNDNNRFVERISDLSYTKWALEAFV 1061 (1118)
Q Consensus 990 ~~~~~~v~l~l~---~~~~~lg~~lsi~~~-~~~a~l~s~l~p~v~----~l~~~~~~iP~~~~Wl~yiS~~rYa~Eal~ 1061 (1118)
+..||..+++++ +|+.++--+++.+.. ...|.+.+.+..+++ +++++..+||+||+|++|++|+.||+|+++
T Consensus 568 A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~ 647 (1391)
T KOG0065|consen 568 AGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLM 647 (1391)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHH
Confidence 654444333333 444444444444332 234555554444433 345678999999999999999999999999
Q ss_pred Hhcccc--cCCc---------ee-ccccc---------ccc-------ccccccCCchhhHHHHHHHHHHHHHHHHHHHH
Q 048718 1062 VSNAKR--YRGI---------WL-ITRCG---------ALY-------SKGYDLNDFFPGLMRLILAGILSRTIAFFCMI 1113 (1118)
Q Consensus 1062 ine~~~--y~g~---------~~-~~~c~---------~L~-------~~G~~~~~~~~~i~iL~~~~v~fRvlayi~L~ 1113 (1118)
+|||.. |+.. -. ...|. .+. .+.|+..++|++++||+++.|+|.++.-+++-
T Consensus 648 ~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~ 727 (1391)
T KOG0065|consen 648 SNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALE 727 (1391)
T ss_pred HhhhhcccCCCCCCCCcccccccccccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHH
Confidence 999742 2211 00 11231 111 23456778899999999999999888888776
Q ss_pred hhc
Q 048718 1114 TLQ 1116 (1118)
Q Consensus 1114 ~~~ 1116 (1118)
+.+
T Consensus 728 yl~ 730 (1391)
T KOG0065|consen 728 YLK 730 (1391)
T ss_pred hcC
Confidence 543
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-51 Score=427.22 Aligned_cols=218 Identities=30% Similarity=0.496 Sum_probs=200.6
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC----hhhhcC
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS----IQSYKR 587 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~----~~~~r~ 587 (1118)
.|+++||+++| ++.++|+|||++|++||+++|+||||||||||||+|.++.+ +++|+|.++|.++. ...+|+
T Consensus 2 mi~i~~l~K~f--g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~~~~~~~~~R~ 77 (240)
T COG1126 2 MIEIKNLSKSF--GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVGDKKDILKLRR 77 (240)
T ss_pred eEEEEeeeEEe--CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEeccchhhHHHHHH
Confidence 47899999999 46789999999999999999999999999999999999998 79999999997652 346889
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
++|+|||+..|||++||.||+.++...- .++++++.+++..++|+.+||.+.+|.++.. |||||||||+||||
T Consensus 78 ~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~q-----LSGGQqQRVAIARA 150 (240)
T COG1126 78 KVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYPAQ-----LSGGQQQRVAIARA 150 (240)
T ss_pred hcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCccc-----cCcHHHHHHHHHHH
Confidence 9999999999999999999999986432 4677888888999999999999999998876 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 668 MVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 668 Ll~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
|+++|+++++|||||+|||+...++++.+++++++|.|.|++||++.++ .+.+|||++|++ |++++.|+++++
T Consensus 151 LaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FA-r~VadrviFmd~-G~iie~g~p~~~ 223 (240)
T COG1126 151 LAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFA-REVADRVIFMDQ-GKIIEEGPPEEF 223 (240)
T ss_pred HcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHH-HHhhheEEEeeC-CEEEEecCHHHH
Confidence 9999999999999999999999999999999999999999999999986 589999999975 699999988765
No 11
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.7e-47 Score=413.63 Aligned_cols=218 Identities=28% Similarity=0.444 Sum_probs=200.4
Q ss_pred EEEEeEEEEEcCC---cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC------hh
Q 048718 513 VAFKDLTITLKGK---NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS------IQ 583 (1118)
Q Consensus 513 l~~knLs~~~~~~---~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~------~~ 583 (1118)
|++++|++.|..+ ...+|+|||++|++||+++|+|+||||||||+|+|.++.. |++|+|.++|.++. ..
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~~l~~~~Lr 79 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLTALSEAELR 79 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecccCChHHHH
Confidence 7899999999642 2479999999999999999999999999999999999998 79999999997753 24
Q ss_pred hhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 048718 584 SYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVN 663 (1118)
Q Consensus 584 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVs 663 (1118)
..|++||++||++.|+...||+||++|++.+. +.++++++++|.++++.+||++..+.++.+ |||||||||+
T Consensus 80 ~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~yP~q-----LSGGQKQRVa 151 (339)
T COG1135 80 QLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADRYPAQ-----LSGGQKQRVA 151 (339)
T ss_pred HHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhccCchh-----cCcchhhHHH
Confidence 57889999999999999999999999998865 478889999999999999999999998876 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 664 VGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 664 IArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
|||||+.+|+||+.|||||+|||.+...|++.|+++.++ |.||++|||+++. +.+.||++.||.+ |++++.|++.++
T Consensus 152 IARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~V-vk~ic~rVavm~~-G~lvE~G~v~~v 229 (339)
T COG1135 152 IARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEV-VKRICDRVAVLDQ-GRLVEEGTVSEV 229 (339)
T ss_pred HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHhhhheEeeC-CEEEEeccHHHh
Confidence 999999999999999999999999999999999999865 9999999999974 7899999999976 699999999876
No 12
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6.9e-46 Score=392.95 Aligned_cols=221 Identities=28% Similarity=0.443 Sum_probs=200.2
Q ss_pred ceEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---h---h
Q 048718 510 TIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---I---Q 583 (1118)
Q Consensus 510 ~~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~---~ 583 (1118)
...|++++|+++| +++.||+|||++|++||+++||||||+|||||||+|.|+++ |++|+|+++|.++. . .
T Consensus 6 ~~~I~vr~v~~~f--G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~i~~ls~~~~~ 81 (263)
T COG1127 6 EPLIEVRGVTKSF--GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGEDIPQLSEEELY 81 (263)
T ss_pred cceEEEeeeeeec--CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcchhccCHHHHH
Confidence 4568999999999 56899999999999999999999999999999999999998 79999999998753 1 2
Q ss_pred hhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHH
Q 048718 584 SYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHI-RDSLVGTVEKRGISGGQRKRV 662 (1118)
Q Consensus 584 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~-~dt~vg~~~~rgLSGGERQRV 662 (1118)
..|+++|++||...||..|||+||+.|.++-+ ...++...++.+..-|+.+||... .+.++.+ |||||+|||
T Consensus 82 ~ir~r~GvlFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsE-----LSGGM~KRv 154 (263)
T COG1127 82 EIRKRMGVLFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGAAADLYPSE-----LSGGMRKRV 154 (263)
T ss_pred HHHhheeEEeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChhhhhhCchh-----hcchHHHHH
Confidence 56889999999999999999999999987654 457888888888889999999876 6766655 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhh
Q 048718 663 NVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKK 741 (1118)
Q Consensus 663 sIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~ 741 (1118)
+|||||+.+|+||++||||+||||.++..+-++|+++.+. |.|+++||||.+. ++..+|++++|.+ |+++..|++++
T Consensus 155 aLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s-~~~i~Drv~~L~~-gkv~~~Gt~~e 232 (263)
T COG1127 155 ALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDS-LLTIADRVAVLAD-GKVIAEGTPEE 232 (263)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHH-HHhhhceEEEEeC-CEEEEeCCHHH
Confidence 9999999999999999999999999999999999999866 9999999999985 6799999999987 69999999998
Q ss_pred HH
Q 048718 742 VE 743 (1118)
Q Consensus 742 l~ 743 (1118)
+.
T Consensus 233 l~ 234 (263)
T COG1127 233 LL 234 (263)
T ss_pred HH
Confidence 74
No 13
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-46 Score=396.39 Aligned_cols=217 Identities=27% Similarity=0.422 Sum_probs=199.5
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcCeE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKRII 589 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~I 589 (1118)
|+|+||++.|. ++.+++|+|++|++||+++++|||||||||+||+|.+++. |++|+|++||+++. ..++|+.|
T Consensus 2 I~~~nvsk~y~--~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~~~d~~~LRr~I 77 (309)
T COG1125 2 IEFENVSKRYG--NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDISDLDPVELRRKI 77 (309)
T ss_pred ceeeeeehhcC--CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecccCCHHHHHHhh
Confidence 68999999994 6789999999999999999999999999999999999998 79999999999864 35789999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCccCCCCCHHHHHHHHHHHH
Q 048718 590 GFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ--HIRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 590 gyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~--~~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
|||-|...|||++||.||+.+-..+. ++.+++.+++++++|+.+||+ +..++++.+ |||||+|||.||||
T Consensus 78 GYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~e-----LSGGQQQRVGv~RA 149 (309)
T COG1125 78 GYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRYPHE-----LSGGQQQRVGVARA 149 (309)
T ss_pred hhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcCchh-----cCcchhhHHHHHHH
Confidence 99999999999999999999877653 577888889999999999997 477887765 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 668 MVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 668 Ll~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
|+.+|+||+||||+++|||.++..+.+.++++.++ |+|||++|||.+++ ++++|++.+|++ |+++..++++++.
T Consensus 150 LAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA-~kLadri~vm~~-G~i~Q~~~P~~il 224 (309)
T COG1125 150 LAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEA-LKLADRIAVMDA-GEIVQYDTPDEIL 224 (309)
T ss_pred HhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHH-HhhhceEEEecC-CeEEEeCCHHHHH
Confidence 99999999999999999999999999999999865 99999999999876 589999999975 7999999999875
No 14
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.7e-45 Score=411.48 Aligned_cols=223 Identities=37% Similarity=0.543 Sum_probs=198.9
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh--hhhcCeE
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI--QSYKRII 589 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~I 589 (1118)
.+.++||++.|+. ++.+|+||||+|++||++||+||||||||||||+|+|+.. |++|+|.++|.+... ...++.|
T Consensus 4 ~i~~~~l~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~~~~~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVVKEPAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeCccCHHHHHhhe
Confidence 4678999999941 4789999999999999999999999999999999999998 689999999988653 4678899
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 048718 590 GFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMV 669 (1118)
Q Consensus 590 gyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl 669 (1118)
||+||++.+++.|||+|||.|.+.++... ....+++++++++.+||.+..++++++ ||+||||||+||+||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~~~~~-----lS~G~kqrl~ia~aL~ 152 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANKKVRT-----LSGGMKQRLSIALALL 152 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCcchhh-----cCHHHHHHHHHHHHHh
Confidence 99999999999999999999999887432 234556799999999999866666655 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHHHHHH
Q 048718 670 MEPSLLILDEPTSGLDSSSSQLLLRALRREALEG-VNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVEEYFA 747 (1118)
Q Consensus 670 ~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G-~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~~yf~ 747 (1118)
++|+||||||||+||||.++.++.+.|++++++| +||+++||++++ +..+||++++|.+ |++++.|+++++...+.
T Consensus 153 ~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e-~~~~~d~v~il~~-G~~~~~g~~~~l~~~~~ 229 (293)
T COG1131 153 HDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEE-AEELCDRVIILND-GKIIAEGTPEELKEKFG 229 (293)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHH-HHHhCCEEEEEeC-CEEEEeCCHHHHHHhhc
Confidence 9999999999999999999999999999999886 899999999986 5678999999976 69999999988776654
No 15
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=6.1e-46 Score=419.24 Aligned_cols=219 Identities=31% Similarity=0.465 Sum_probs=200.9
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-hhhcCeE
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-QSYKRII 589 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~I 589 (1118)
..++++||++.|. +..+|+|||++|++||+++|+||||||||||||+|+|+.. |++|+|.++|+++.. ...+|.|
T Consensus 4 ~~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i~~lpp~kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDITDVPPEKRPI 79 (352)
T ss_pred ceEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCChhhccc
Confidence 4689999999994 6789999999999999999999999999999999999998 799999999998753 4568899
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 048718 590 GFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMV 669 (1118)
Q Consensus 590 gyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl 669 (1118)
|+|||+..|||+|||+||+.|+++.+ ....+++.+++++++++.++|.+..++++.+ |||||+|||+|||||+
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~q-----LSGGQqQRVALARAL~ 152 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKPHQ-----LSGGQQQRVALARALV 152 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhChhh-----hChHHHHHHHHHHHhh
Confidence 99999999999999999999998743 3345667788999999999999999998876 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 670 MEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 670 ~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
.+|++|+||||.|+||..-+.++...|+++.++ |.|.|++|||.+++ ..+.|++++|.+ |+|...|+++++
T Consensus 153 ~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEA-l~msDrI~Vm~~-G~I~Q~gtP~ei 224 (352)
T COG3842 153 PEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEA-LAMSDRIAVMND-GRIEQVGTPEEI 224 (352)
T ss_pred cCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHH-hhhccceEEccC-CceeecCCHHHH
Confidence 999999999999999999999999999999855 99999999999876 589999999976 699999999987
No 16
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-45 Score=395.54 Aligned_cols=204 Identities=27% Similarity=0.405 Sum_probs=186.0
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEE
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGF 591 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 591 (1118)
.+.++++++.|. ...+|+|||++|.+||+++|+||||||||||||+|+|+.+ |++|+|.++|.++ ......++|
T Consensus 3 ~l~i~~v~~~f~--~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v--~~p~~~~~~ 76 (248)
T COG1116 3 LLEIEGVSKSFG--GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPV--TGPGPDIGY 76 (248)
T ss_pred eEEEEeeEEEeC--ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccc--CCCCCCEEE
Confidence 478999999995 3789999999999999999999999999999999999998 7899999999876 334678999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 048718 592 VPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVME 671 (1118)
Q Consensus 592 V~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~ 671 (1118)
|||++.++|.+||+||+.|++... ..++++.+++++++|+.+||.+..++++.+ |||||||||+|||||+.+
T Consensus 77 vFQ~~~LlPW~Tv~~NV~l~l~~~---~~~~~e~~~~a~~~L~~VgL~~~~~~~P~q-----LSGGMrQRVaiARAL~~~ 148 (248)
T COG1116 77 VFQEDALLPWLTVLDNVALGLELR---GKSKAEARERAKELLELVGLAGFEDKYPHQ-----LSGGMRQRVAIARALATR 148 (248)
T ss_pred EeccCcccchhhHHhhheehhhcc---ccchHhHHHHHHHHHHHcCCcchhhcCccc-----cChHHHHHHHHHHHHhcC
Confidence 999999999999999999998764 245666777899999999999999998876 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEecC
Q 048718 672 PSLLILDEPTSGLDSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAKG 730 (1118)
Q Consensus 672 P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~G 730 (1118)
|+||+||||+++||+.++..+.+.|.++.+ .++||++||||.++++ .++|+|++|.++
T Consensus 149 P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv-~LsdRivvl~~~ 207 (248)
T COG1116 149 PKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAV-YLADRVVVLSNR 207 (248)
T ss_pred CCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHH-hhhCEEEEecCC
Confidence 999999999999999999999999988875 5999999999999876 699999999764
No 17
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-45 Score=414.76 Aligned_cols=219 Identities=29% Similarity=0.445 Sum_probs=200.6
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-hhhcCeE
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-QSYKRII 589 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~I 589 (1118)
..|+++||++.|+. ..+|+|+|++|++||+++|+||||||||||||+|||+.. +++|+|.|+|++++. ...+|.|
T Consensus 2 ~~i~l~~v~K~yg~--~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~vt~l~P~~R~i 77 (338)
T COG3839 2 AELELKNVRKSFGS--FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDVTDLPPEKRGI 77 (338)
T ss_pred cEEEEeeeEEEcCC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCChhHCCE
Confidence 35899999999942 229999999999999999999999999999999999998 799999999998764 4457889
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 048718 590 GFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMV 669 (1118)
Q Consensus 590 gyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl 669 (1118)
++|||+..|||+|||+|||.|+++.+ ..++++.+++|+++.+.|+|+|..|+++.+ |||||||||+|||||+
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~P~~-----LSGGQrQRVAlaRAlV 149 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRKPLQ-----LSGGQRQRVALARALV 149 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcCccc-----CChhhHHHHHHHHHHh
Confidence 99999999999999999999999865 467888889999999999999999998876 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 670 MEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 670 ~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
++|++++||||+|+||+..+..+...|+++.++ |.|+|.+|||..++ ..++|++++|.+ |++...|++.++-
T Consensus 150 r~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EA-mtladri~Vm~~-G~i~Q~g~p~ely 222 (338)
T COG3839 150 RKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEA-MTLADRIVVMND-GRIQQVGTPLELY 222 (338)
T ss_pred cCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHH-HhhCCEEEEEeC-CeeeecCChHHHh
Confidence 999999999999999999999999999998865 99999999998765 589999999985 7999999998873
No 18
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.9e-45 Score=399.88 Aligned_cols=220 Identities=32% Similarity=0.508 Sum_probs=195.2
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcCe
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKRI 588 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 588 (1118)
.++++||++.|. ++.||+|+||+|++||+++|+||||||||||||+|+|+++ |.+|+|+++|+++. .+.+.+.
T Consensus 2 ~L~~~~ls~~y~--~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i~~~~~kelAk~ 77 (258)
T COG1120 2 MLEVENLSFGYG--GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSPKELAKK 77 (258)
T ss_pred eeEEEEEEEEEC--CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCchhhcCHHHHhhh
Confidence 478999999994 6789999999999999999999999999999999999998 68999999998864 3567789
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhccCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 048718 589 IGFVPQDDIVHGNLTVEENLWFSARCRLSA-DLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 589 IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~-~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
++||||.+.....+||+|-+.++..-+... .....+.++.++++|+.+|+.+.+++.+.+ |||||||||.||||
T Consensus 78 ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~-----LSGGerQrv~iArA 152 (258)
T COG1120 78 LAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDE-----LSGGERQRVLIARA 152 (258)
T ss_pred EEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccc-----cChhHHHHHHHHHH
Confidence 999999998888999999999986432221 112233345799999999999999999987 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 668 MVMEPSLLILDEPTSGLDSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 668 Ll~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
|+.+|+||+|||||+.||...+.++++.++++++ +|+|||+++||++.+ .+++|++++|.+ |+++..|+++++
T Consensus 153 LaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A-~ryad~~i~lk~-G~i~a~G~p~ev 226 (258)
T COG1120 153 LAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLA-ARYADHLILLKD-GKIVAQGTPEEV 226 (258)
T ss_pred HhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HHhCCEEEEEEC-CeEEeecCcchh
Confidence 9999999999999999999999999999999995 599999999999986 589999999975 699999999876
No 19
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-45 Score=388.42 Aligned_cols=226 Identities=29% Similarity=0.450 Sum_probs=199.0
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC------hhh
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS------IQS 584 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~------~~~ 584 (1118)
..|+++||++.|+ +++++|+|||++|++||+++|+||||||||||||+|.|+.+ +++|+|+++|.++. .+.
T Consensus 2 ~~i~~~nl~k~yp-~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i~~~~~k~lr~ 78 (258)
T COG3638 2 MMIEVKNLSKTYP-GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQITKLKGKELRK 78 (258)
T ss_pred ceEEEeeeeeecC-CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccchhccchHHHHH
Confidence 3589999999997 46789999999999999999999999999999999999988 68999999997642 245
Q ss_pred hcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccC-----CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 048718 585 YKRIIGFVPQDDIVHGNLTVEENLWFSARCRLS-----ADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQR 659 (1118)
Q Consensus 585 ~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~-----~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGER 659 (1118)
+|++|||+||++.|.+.+||.+|+..+..-+.+ -++...+.+..+-+.|+++||.+.+.++.++ |||||+
T Consensus 79 ~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~-----LSGGQQ 153 (258)
T COG3638 79 LRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAST-----LSGGQQ 153 (258)
T ss_pred HHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhcc-----CCcchh
Confidence 788999999999999999999999988643332 1223233455678899999999999999887 999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecC
Q 048718 660 KRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGP 738 (1118)
Q Consensus 660 QRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~ 738 (1118)
|||+|||||+.+|+||+.|||+++|||.++..+++.|+++.+ +|.|||+..|+.+.+ .++|||++-|.+ |+++|+||
T Consensus 154 QRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA-~~Y~~Riigl~~-G~ivfDg~ 231 (258)
T COG3638 154 QRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLA-KKYADRIIGLKA-GRIVFDGP 231 (258)
T ss_pred HHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHH-HHHHhhheEecC-CcEEEeCC
Confidence 999999999999999999999999999999999999999985 599999999999986 589999999976 69999999
Q ss_pred hhhHHHHH
Q 048718 739 VKKVEEYF 746 (1118)
Q Consensus 739 ~~~l~~yf 746 (1118)
++++.+.+
T Consensus 232 ~~el~~~~ 239 (258)
T COG3638 232 ASELTDEA 239 (258)
T ss_pred hhhhhHHH
Confidence 99875443
No 20
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=6.9e-45 Score=388.71 Aligned_cols=207 Identities=30% Similarity=0.445 Sum_probs=180.4
Q ss_pred EEEEeEEEEEcCCc--ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh------hh
Q 048718 513 VAFKDLTITLKGKN--KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI------QS 584 (1118)
Q Consensus 513 l~~knLs~~~~~~~--k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------~~ 584 (1118)
++++||++.|..+. .++|++|||+|++||+++|+|||||||||||++|.|+.. |++|.|.++|.++.. ..
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~--pt~G~v~i~g~d~~~l~~~~~~~ 79 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK--PTSGEVLINGKDLTKLSEKELAK 79 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEEcCcCCHHHHHH
Confidence 56899999986432 479999999999999999999999999999999999998 699999999987642 12
Q ss_pred h-cCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCcccc-ccccCccCCCCCHHHHHHH
Q 048718 585 Y-KRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRD-SLVGTVEKRGISGGQRKRV 662 (1118)
Q Consensus 585 ~-r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~d-t~vg~~~~rgLSGGERQRV 662 (1118)
+ ++.||||||+..|+|.+||.||+.+++.+. ..+.......++++++.+||.+..+ +++.+ |||||||||
T Consensus 80 ~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~---~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~e-----LSGGqqQRV 151 (226)
T COG1136 80 LRRKKIGFVFQNFNLLPDLTVLENVELPLLIA---GKSAGRRKRAAEELLEVLGLEDRLLKKKPSE-----LSGGQQQRV 151 (226)
T ss_pred HHHHhEEEECccCCCCCCCCHHHHHHhHHHHc---CCChhHHHHHHHHHHHhcCChhhhccCCchh-----cCHHHHHHH
Confidence 3 457999999999999999999999987654 2233245667899999999997666 76765 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcE
Q 048718 663 NVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGV 732 (1118)
Q Consensus 663 sIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~ 732 (1118)
+|||||+.+|+||+.||||.+||+.++.+|+++|++++++ |+|||++|||+.. ...+||++.|.+| +
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~l--A~~~dr~i~l~dG-~ 219 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPEL--AKYADRVIELKDG-K 219 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH--HHhCCEEEEEeCC-e
Confidence 9999999999999999999999999999999999999865 9999999999864 5799999999875 5
No 21
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.8e-45 Score=393.44 Aligned_cols=220 Identities=27% Similarity=0.475 Sum_probs=190.0
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEE
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIG 590 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 590 (1118)
..|+++||++.|.+ + ++|+||||+|++|++++|+||||||||||+|+|.|+++ |.+|+|.++|++.....-+.+||
T Consensus 3 ~~i~v~nl~v~y~~-~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~~~~~~~~~Ig 78 (254)
T COG1121 3 PMIEVENLTVSYGN-R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPVRKRRKRLRIG 78 (254)
T ss_pred cEEEEeeeEEEECC-E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccccccccCCeEE
Confidence 45899999999953 2 69999999999999999999999999999999999998 68999999998765433357899
Q ss_pred EEcCCCC---CCCCCCHHHHHHHHHhhccCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 048718 591 FVPQDDI---VHGNLTVEENLWFSARCRLSA-DLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGL 666 (1118)
Q Consensus 591 yV~Qd~~---l~~~LTV~EnL~f~a~lr~~~-~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIAr 666 (1118)
||||... -|| +||+|.+..+...+... .......++.++++|+++|+.+.+|+.+|+ |||||+|||-|||
T Consensus 79 YVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~-----LSGGQ~QRV~lAR 152 (254)
T COG1121 79 YVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGE-----LSGGQKQRVLLAR 152 (254)
T ss_pred EcCcccccCCCCC-cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccc-----cCcHHHHHHHHHH
Confidence 9999542 243 79999999875433211 112223357799999999999999999998 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 667 EMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 667 ALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
||+.+|+||+|||||+|+|+.++.+|.++|++++++|+||++|+||++. +.+++|+++.|+ +++++.|+++++.
T Consensus 153 AL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~-v~~~~D~vi~Ln--~~~~~~G~~~~~~ 226 (254)
T COG1121 153 ALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGL-VMAYFDRVICLN--RHLIASGPPEEVL 226 (254)
T ss_pred HhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHH-hHhhCCEEEEEc--CeeEeccChhhcc
Confidence 9999999999999999999999999999999999889999999999986 568999999996 3789999998763
No 22
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.3e-45 Score=394.81 Aligned_cols=220 Identities=29% Similarity=0.447 Sum_probs=197.1
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCE---ecCh-hhhcC
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGK---VASI-QSYKR 587 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~---~~~~-~~~r~ 587 (1118)
.|.++++++.+ +...+++|||++|+.||++|++|||||||||||++|+|+.. |+.|.|.+||+ +.+. ....+
T Consensus 2 ~i~i~~~~~~~--~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~~~~~~R 77 (345)
T COG1118 2 SIRINNVKKRF--GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSNLAVRDR 77 (345)
T ss_pred ceeehhhhhhc--ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhccchhhc
Confidence 46778888888 35679999999999999999999999999999999999998 79999999998 5433 23457
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
+||||||+..+|++|||.|||.|+++.+ ....++.+.+.+++++|+.+.|++..++++.+ |||||||||++|||
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ryP~Q-----LSGGQrQRVALARA 151 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRYPAQ-----LSGGQRQRVALARA 151 (345)
T ss_pred ceeEEEechhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcCchh-----cChHHHHHHHHHHH
Confidence 8999999999999999999999999776 22344667788999999999999999988766 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 668 MVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 668 Ll~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
|+.+|++|+||||+++||+.-+.++.+.|+++..+ |.|+++||||.++ +++++|+|++|.+ |+|...|+++++-
T Consensus 152 LA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~ee-a~~ladrvvvl~~-G~Ieqvg~p~ev~ 226 (345)
T COG1118 152 LAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEE-ALELADRVVVLNQ-GRIEQVGPPDEVY 226 (345)
T ss_pred hhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHH-HHhhcceEEEecC-CeeeeeCCHHHHh
Confidence 99999999999999999999999999999999866 9999999999986 5799999999976 6999999999873
No 23
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=4.7e-44 Score=366.84 Aligned_cols=212 Identities=30% Similarity=0.438 Sum_probs=190.6
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh------hhhc
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI------QSYK 586 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------~~~r 586 (1118)
|+|+||++.|..+ +++|+||||+|++||++-|+||||||||||||+|.+... |++|+|+++|.++.. .-+|
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~~l~~~~iP~LR 78 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLSRLKGREIPFLR 78 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecccccccccchhh
Confidence 7899999999865 779999999999999999999999999999999999998 799999999998642 2478
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 048718 587 RIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGL 666 (1118)
Q Consensus 587 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIAr 666 (1118)
++||+||||..|.+++||+||++|+++.. +.+..+.+++|.++|+.+||.+..+..+.+ |||||+|||+|||
T Consensus 79 R~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~-----LSGGEQQRvaIAR 150 (223)
T COG2884 79 RQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARALPSQ-----LSGGEQQRVAIAR 150 (223)
T ss_pred heeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcCccc-----cCchHHHHHHHHH
Confidence 99999999999999999999999998764 556778888999999999999998887765 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEec
Q 048718 667 EMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHG 737 (1118)
Q Consensus 667 ALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G 737 (1118)
|++.+|++||.||||.+|||..+.+|++++.++...|.||+++|||.+. +.++-.+++.|.+ |+++...
T Consensus 151 AiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~l-v~~~~~rvl~l~~-Grl~~d~ 219 (223)
T COG2884 151 AIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLEL-VNRMRHRVLALED-GRLVRDE 219 (223)
T ss_pred HHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHH-HHhccCcEEEEeC-CEEEecc
Confidence 9999999999999999999999999999999999999999999999764 4455567777765 6887653
No 24
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=4.1e-43 Score=394.56 Aligned_cols=219 Identities=29% Similarity=0.443 Sum_probs=195.1
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh--hhhcCeE
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI--QSYKRII 589 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~I 589 (1118)
.++++||+++|. ++.+|+||||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ...++.|
T Consensus 7 ~i~i~~l~k~~~--~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~~~~~~~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYG--DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEPVPSRARHARQRV 82 (306)
T ss_pred eEEEEeEEEEEC--CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEecccchHHHHhcE
Confidence 589999999994 4679999999999999999999999999999999999998 689999999988643 3467889
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 048718 590 GFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMV 669 (1118)
Q Consensus 590 gyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl 669 (1118)
||+||++.+++.+||+|||.|.+..+ .....+...+++++++.++|.+..++.++. |||||||||+||+||+
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~aL~ 154 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKVGE-----LSGGMKRRLTLARALV 154 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCchhh-----CCHHHHHHHHHHHHHh
Confidence 99999999999999999999876543 233444455788999999999888988876 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHHH
Q 048718 670 MEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVEE 744 (1118)
Q Consensus 670 ~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~~ 744 (1118)
++|++|||||||+|||+.++..+.+.|++++++|+|||++||++++ +.+++|++++|.+ |++++.|+++++..
T Consensus 155 ~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e-~~~~~d~i~il~~-G~i~~~g~~~~l~~ 227 (306)
T PRK13537 155 NDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEE-AERLCDRLCVIEE-GRKIAEGAPHALIE 227 (306)
T ss_pred CCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHH-HHHhCCEEEEEEC-CEEEEECCHHHHHh
Confidence 9999999999999999999999999999998779999999999985 5688999999976 69999999988753
No 25
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=4.8e-43 Score=399.21 Aligned_cols=218 Identities=25% Similarity=0.416 Sum_probs=193.6
Q ss_pred EEEEeEEEEEcCC--cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh------hh
Q 048718 513 VAFKDLTITLKGK--NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI------QS 584 (1118)
Q Consensus 513 l~~knLs~~~~~~--~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------~~ 584 (1118)
|+++||++.|..+ .+++|+||||+|++||+++|+||||||||||||+|+|+.+ |++|+|.++|.++.. ..
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~~~~~~~l~~ 79 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLTTLSNSELTK 79 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHH
Confidence 7899999999532 2579999999999999999999999999999999999998 689999999987642 12
Q ss_pred hcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 048718 585 YKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNV 664 (1118)
Q Consensus 585 ~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsI 664 (1118)
.++.|||+||+..+++.+||+||+.|+.... ..++.+.++++.++++.+||.+..++++++ |||||||||+|
T Consensus 80 ~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~-----LSgGqkQRV~I 151 (343)
T TIGR02314 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYPSN-----LSGGQKQRVAI 151 (343)
T ss_pred HhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHHHH
Confidence 4778999999999999999999999986532 234555667789999999999988888766 99999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 665 GLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 665 ArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
||||+.+|++|+|||||++||+.++..+++.|+++.++ |.|||++||+++. +.+++|++++|.+ |++++.|+++++
T Consensus 152 ARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~-v~~~~d~v~vl~~-G~iv~~g~~~~v 228 (343)
T TIGR02314 152 ARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDV-VKRICDCVAVISN-GELIEQGTVSEI 228 (343)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEEcCHHHH
Confidence 99999999999999999999999999999999999865 9999999999875 5688999999975 699999998876
No 26
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-44 Score=370.12 Aligned_cols=219 Identities=27% Similarity=0.403 Sum_probs=200.5
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC--hhhhcCeEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS--IQSYKRIIG 590 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~--~~~~r~~Ig 590 (1118)
+++.+|+++|+. ..++++||||+++.||+++|+|||||||||+||+|++++. |++|.|+++|.+.. ....|+.||
T Consensus 2 l~v~~l~K~y~~-~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~~p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDPSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC-HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccccChHHHhhhcc
Confidence 678899999963 3459999999999999999999999999999999999998 79999999998753 346899999
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
.++.+-.++..||++|||.|.+++. ++...+.+++++++.+.|+|.++.|+++|+ +|-||||||+|||||++
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~~-----~S~G~kqkV~iARAlvh 150 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVGE-----FSTGMKQKVAIARALVH 150 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHhh-----hchhhHHHHHHHHHHhc
Confidence 9998888999999999999998875 566777788999999999999999999987 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHHH
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVEE 744 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~~ 744 (1118)
+|++++|||||||||..++..+.+.++++..+|++||++||.+.+ +..+||++++|.+ |++++.|+.+++..
T Consensus 151 ~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~E-vealCDrvivlh~-Gevv~~gs~~~l~~ 222 (245)
T COG4555 151 DPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQE-VEALCDRVIVLHK-GEVVLEGSIEALDA 222 (245)
T ss_pred CCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHH-HHHhhheEEEEec-CcEEEcCCHHHHHH
Confidence 999999999999999999999999999999889999999999975 5679999999987 68999999987653
No 27
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.4e-44 Score=371.59 Aligned_cols=235 Identities=26% Similarity=0.411 Sum_probs=199.4
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCceeEEEECCEecC-----h
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPG---CIMSGTILVNGKVAS-----I 582 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~---~~~sG~I~inG~~~~-----~ 582 (1118)
..++++||++.| +++++|+|||+.|++++++|||||||||||||||+|..+... ...+|+|.++|+++- .
T Consensus 6 ~~~~~~~l~~yY--g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYY--GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEE--CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 457899999999 468899999999999999999999999999999999988642 236899999998763 3
Q ss_pred hhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 048718 583 QSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRV 662 (1118)
Q Consensus 583 ~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRV 662 (1118)
..+|++||+|||.|..|| +|++||+.|+.++.- ....+..++|+..|+...|.+--..+..+ ...+|||||+||+
T Consensus 84 ~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g---~~~~~ldeiVe~sLk~AaLWdEVKDrL~~-sa~~LSGGQQQRL 158 (253)
T COG1117 84 VELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHG---IKDKELDEIVESSLKKAALWDEVKDRLHK-SALGLSGGQQQRL 158 (253)
T ss_pred HHHHHHheeeccCCCCCC-chHHHHHHHhHHhhc---cchHHHHHHHHHHHHHhHhHHHhHHHhhC-CccCCChhHHHHH
Confidence 468999999999999999 899999999988653 22356677899999988886533222222 3457999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 663 NVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 663 sIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
+|||||+.+|+||+||||||+|||.+...|-++|.+|+ +.-|||+|||.+..+ .+..|+..++.. |++|++|+.+++
T Consensus 159 cIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQA-aRvSD~taFf~~-G~LvE~g~T~~i 235 (253)
T COG1117 159 CIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQA-ARVSDYTAFFYL-GELVEFGPTDKI 235 (253)
T ss_pred HHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHHHH-HHHhHhhhhhcc-cEEEEEcCHHhh
Confidence 99999999999999999999999999999999999987 568999999999875 589999999986 699999999876
Q ss_pred HHHHHhcCCCCCCCCCchhHH
Q 048718 743 EEYFASLGITVPDRINPPDYF 763 (1118)
Q Consensus 743 ~~yf~~lG~~~p~~~n~aDfl 763 (1118)
|.-|.+..+.||+
T Consensus 236 --------F~~P~~~~TedYi 248 (253)
T COG1117 236 --------FTNPKHKRTEDYI 248 (253)
T ss_pred --------hcCccHHHHHHHh
Confidence 3456666666765
No 28
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-43 Score=399.89 Aligned_cols=218 Identities=26% Similarity=0.410 Sum_probs=194.7
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-hhhcCeEE
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-QSYKRIIG 590 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Ig 590 (1118)
.|+++||++.|. +++.+|+|+||+|++||+++|+|||||||||||++|+|+.+ +++|+|.++|+++.. ...++.||
T Consensus 3 ~l~i~~l~~~~~-~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYD-GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVNELEPADRDIA 79 (356)
T ss_pred EEEEEeEEEEeC-CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEE
Confidence 488999999994 23679999999999999999999999999999999999998 689999999988642 23457899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
||||++.+||++||+||+.|+.+.+ ..++.+...+++++++.+||.+..++++.+ |||||||||+|||||+.
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----LSgGq~QRvalARAL~~ 151 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKPRE-----LSGGQRQRVAMGRAIVR 151 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCChhh-----CCHHHHHHHHHHHHHhc
Confidence 9999999999999999999987542 234555567789999999999999988876 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
+|+||||||||++||+.++..+.+.|+++.++ |.|+|++|||+++ +.+++|++++|.+ |+++..|+++++
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e-a~~l~D~i~vl~~-G~i~~~g~~~~~ 222 (356)
T PRK11650 152 EPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVE-AMTLADRVVVMNG-GVAEQIGTPVEV 222 (356)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEeC-CEEEEECCHHHH
Confidence 99999999999999999999999999999865 9999999999875 5689999999975 699999999876
No 29
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.2e-43 Score=376.60 Aligned_cols=217 Identities=30% Similarity=0.484 Sum_probs=188.7
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh------hhhc
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI------QSYK 586 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------~~~r 586 (1118)
++++||++.|. ++.+|+|+||+|++||+++|+||||||||||||+|+|+++ |++|+|.++|.++.. ..++
T Consensus 1 l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~ 76 (235)
T cd03261 1 IELRGLTKSFG--GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISGLSEAELYRLR 76 (235)
T ss_pred CeEEEEEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccChhhHHHHh
Confidence 46899999994 4679999999999999999999999999999999999998 689999999987532 2356
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 048718 587 RIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGL 666 (1118)
Q Consensus 587 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIAr 666 (1118)
+.|+||+|++.+++.+||+||+.++..... .....+...+++++++.+||.+..++.+++ |||||||||+||+
T Consensus 77 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~ia~ 149 (235)
T cd03261 77 RRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYPAE-----LSGGMKKRVALAR 149 (235)
T ss_pred cceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHH
Confidence 789999999999999999999998754221 223444456788999999998888887765 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 667 EMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 667 ALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
||+.+|+||||||||+|||+.++..+++.|++++++ |+|||++||+++. +.+++|++++|.+ |++++.|+++++
T Consensus 150 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~-~~~~~d~v~~l~~-G~i~~~g~~~~~ 224 (235)
T cd03261 150 ALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDT-AFAIADRIAVLYD-GKIVAEGTPEEL 224 (235)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH-HHHhcCEEEEEEC-CeEEEecCHHHH
Confidence 999999999999999999999999999999999864 8999999999875 4578999999976 689999988765
No 30
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=9.3e-43 Score=398.62 Aligned_cols=218 Identities=28% Similarity=0.436 Sum_probs=195.6
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-hhhcCeEE
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-QSYKRIIG 590 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Ig 590 (1118)
.|+++||+++|. ++.+|+|+||+|++||+++|+|||||||||||++|+|+.+ |++|+|.++|+++.. ...++.||
T Consensus 4 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~~~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFG--AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDITRLPPQKRDYG 79 (353)
T ss_pred EEEEEEEEEEeC--CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEE
Confidence 588999999994 4679999999999999999999999999999999999998 689999999988642 23467899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
||||+..+||++||+||+.|+.+.+ ..++.+.+.+++++++.+||.+..++++.+ |||||||||+|||||+.
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~-----LSgGq~QRvaLARaL~~ 151 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYPGQ-----LSGGQQQRVALARALAT 151 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCChhh-----CCHHHHHHHHHHHHHhc
Confidence 9999999999999999999987643 344556667899999999999999988766 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
+|++|||||||++||+.++.++.+.|+++.++ |.|+|++|||+++ +..++|++++|.+ |++++.|+++++.
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~e-a~~l~d~i~vl~~-G~i~~~g~~~~~~ 223 (353)
T TIGR03265 152 SPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEE-ALSMADRIVVMNH-GVIEQVGTPQEIY 223 (353)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH-HHHhCCEEEEEEC-CEEEEEcCHHHHH
Confidence 99999999999999999999999999998765 9999999999985 4689999999976 6999999998764
No 31
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-42 Score=396.62 Aligned_cols=217 Identities=26% Similarity=0.441 Sum_probs=195.1
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-hhhcCeEE
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-QSYKRIIG 590 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Ig 590 (1118)
.|+++||++.|. ++.+|+|+|++|++||+++|+|||||||||||++|+|+.+ +++|+|.++|+++.. ...++.||
T Consensus 6 ~l~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig 81 (351)
T PRK11432 6 FVVLKNITKRFG--SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDVTHRSIQQRDIC 81 (351)
T ss_pred EEEEEeEEEEEC--CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEE
Confidence 588999999994 4679999999999999999999999999999999999998 689999999988643 23457899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
||||++.+||++||+||+.|+++.+ ...+.+..++++++++.+||.+..++++.+ |||||||||+|||||+.
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~-----LSgGq~QRVaLARaL~~ 153 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYVDQ-----ISGGQQQRVALARALIL 153 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHHHc
Confidence 9999999999999999999997643 244556667899999999999988888765 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
+|+||||||||++||+.++.++.+.|+++.++ |+|+|++|||+++ +.+++|++++|.+ |+++..|+++++
T Consensus 154 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e-~~~laD~i~vm~~-G~i~~~g~~~~~ 224 (351)
T PRK11432 154 KPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSE-AFAVSDTVIVMNK-GKIMQIGSPQEL 224 (351)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH-HHHhCCEEEEEEC-CEEEEEcCHHHH
Confidence 99999999999999999999999999999865 9999999999976 4689999999986 699999999876
No 32
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2e-42 Score=396.90 Aligned_cols=218 Identities=25% Similarity=0.411 Sum_probs=195.1
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCce--eEEEECCEecCh-hhhcCe
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMS--GTILVNGKVASI-QSYKRI 588 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~s--G~I~inG~~~~~-~~~r~~ 588 (1118)
.|+++||+++|. ++.+|+|+|++|++||+++|+|||||||||||++|+|+.+ +++ |+|.++|+++.. ...++.
T Consensus 5 ~l~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~~~~~~~~~~r~ 80 (362)
T TIGR03258 5 GIRIDHLRVAYG--ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADRDLTHAPPHKRG 80 (362)
T ss_pred EEEEEEEEEEEC--CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCEECCCCCHHHCC
Confidence 588999999994 4679999999999999999999999999999999999998 678 999999988642 234678
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 048718 589 IGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEM 668 (1118)
Q Consensus 589 IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArAL 668 (1118)
||||||++.+||++||+|||.|++..+ ..++.+.+.+++++++.+||.+..++++.+ |||||||||+|||||
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~-----LSgGq~QRvaLARAL 152 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLPAQ-----LSGGMQQRIAIARAI 152 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCChhh-----CCHHHHHHHHHHHHH
Confidence 999999999999999999999987543 245556667799999999999999988876 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 669 VMEPSLLILDEPTSGLDSSSSQLLLRALRREALE--GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 669 l~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~--G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
+.+|+||||||||+|||+.++.++.+.|+++.++ |.|+|++|||+++ +..++|++++|.+ |+++..|+++++.
T Consensus 153 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~e-a~~l~dri~vl~~-G~i~~~g~~~~~~ 227 (362)
T TIGR03258 153 AIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDD-ALTLADKAGIMKD-GRLAAHGEPQALY 227 (362)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEEcCHHHHH
Confidence 9999999999999999999999999999999865 8999999999986 4689999999976 6999999998773
No 33
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.6e-43 Score=377.38 Aligned_cols=219 Identities=30% Similarity=0.469 Sum_probs=196.5
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC----hhhhcC
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS----IQSYKR 587 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~----~~~~r~ 587 (1118)
.+.++|++++|+++ ..+|+|+|++|++||.++|+|+||||||||+++|+|+++ |.+|.|.++|.+.. ...+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~~~~~~~~~~~~ 79 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDTSSEKSLLELRQ 79 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeeccchhhHHHhhc
Confidence 47899999999754 789999999999999999999999999999999999998 68999999998854 456889
Q ss_pred eEEEEcCCCCC-CCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 048718 588 IIGFVPQDDIV-HGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGL 666 (1118)
Q Consensus 588 ~IgyV~Qd~~l-~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIAr 666 (1118)
.||||||++.. +..-||.|.+.|+.... ..+.++.+++++++++.+||.+.+++.+.+ |||||||||+||.
T Consensus 80 ~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~-----LSGGqkqRvaIA~ 151 (235)
T COG1122 80 KVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRPPFN-----LSGGQKQRVAIAG 151 (235)
T ss_pred ceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCCccc-----cCCcceeeHHhhH
Confidence 99999999733 23569999999998643 566777888999999999999999988766 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 667 EMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 667 ALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
+|+++|++|+|||||+|||+..+.++++.|+++..+ |+|+|++|||.+. +..++|++++|.+ |+++++|++.++.
T Consensus 152 vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~-~~~~ad~v~vl~~-G~i~~~g~p~~i~ 227 (235)
T COG1122 152 VLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLEL-VLEYADRVVVLDD-GKILADGDPAEIF 227 (235)
T ss_pred HHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHH-HHhhCCEEEEEEC-CEEeecCCHHHHh
Confidence 999999999999999999999999999999999977 7999999999986 5688999999986 6899999987664
No 34
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=4.9e-42 Score=390.84 Aligned_cols=220 Identities=27% Similarity=0.412 Sum_probs=195.0
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh--hhhcCe
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI--QSYKRI 588 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~ 588 (1118)
..|+++||++.|+ ++.+|+||||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ...++.
T Consensus 40 ~~i~i~nl~k~y~--~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~~~~~~~~~~~~ 115 (340)
T PRK13536 40 VAIDLAGVSKSYG--DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVPVPARARLARAR 115 (340)
T ss_pred eeEEEEEEEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEECCcchHHHhcc
Confidence 4589999999994 4679999999999999999999999999999999999998 689999999988642 345778
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 048718 589 IGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEM 668 (1118)
Q Consensus 589 IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArAL 668 (1118)
|||+||++.+++.+||.||+.+....+ .....+...+++++++.+||.+..++++++ |||||||||+||+||
T Consensus 116 ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~-----LS~G~kqrv~lA~aL 187 (340)
T PRK13536 116 IGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARVSD-----LSGGMKRRLTLARAL 187 (340)
T ss_pred EEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCChhh-----CCHHHHHHHHHHHHH
Confidence 999999999999999999999765443 123333445678899999999989998876 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHHH
Q 048718 669 VMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVEE 744 (1118)
Q Consensus 669 l~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~~ 744 (1118)
+++|++|||||||+|||+.++..+.+.|++++++|+|||++||++++ +.+++|++++|.+ |++++.|+++++..
T Consensus 188 ~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e-~~~~~d~i~il~~-G~i~~~g~~~~l~~ 261 (340)
T PRK13536 188 INDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEE-AERLCDRLCVLEA-GRKIAEGRPHALID 261 (340)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHH-HHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence 99999999999999999999999999999998789999999999975 5689999999976 69999999998754
No 35
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=4.1e-42 Score=393.35 Aligned_cols=220 Identities=27% Similarity=0.423 Sum_probs=193.9
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-hhhcCeEE
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-QSYKRIIG 590 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Ig 590 (1118)
.|+++||++.|. ++.+|+|+||+|++||+++|+||||||||||||+|+|+++ +++|+|+++|+++.. ...++.||
T Consensus 2 ~L~i~~l~~~~~--~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~~~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFG--RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVSRLHARDRKVG 77 (353)
T ss_pred EEEEEEEEEEeC--CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHCCEE
Confidence 478999999994 4679999999999999999999999999999999999998 689999999998642 23456899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLS-ADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMV 669 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~-~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl 669 (1118)
||||++.+||++||+||+.|+...... ......+..++++++++.++|.+..++++.+ |||||||||+|||||+
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----LSgGq~QRvalArAL~ 152 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQ-----LSGGQKQRVALARALA 152 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHHHHHHHHh
Confidence 999999999999999999998653211 1234455566889999999999988888766 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 670 MEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 670 ~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
.+|++|||||||+|||+.++.++.+.|+++.++ |.|+|++||++++ +.+++|++++|.+ |++++.|+++++
T Consensus 153 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~e-a~~~~Dri~vl~~-G~i~~~g~~~~i 224 (353)
T PRK10851 153 VEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEE-AMEVADRVVVMSQ-GNIEQAGTPDQV 224 (353)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEEcCHHHH
Confidence 999999999999999999999999999999865 8999999999976 4689999999976 699999999876
No 36
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=5.6e-42 Score=394.66 Aligned_cols=218 Identities=25% Similarity=0.391 Sum_probs=194.7
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-hhhcCeE
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-QSYKRII 589 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~I 589 (1118)
..|+++||++.|. ++.+|+|+||+|++||+++|+|||||||||||++|+|+.+ +++|+|.++|+++.. ...++.|
T Consensus 13 ~~L~l~~l~~~~~--~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~~~~~~~r~i 88 (375)
T PRK09452 13 PLVELRGISKSFD--GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDITHVPAENRHV 88 (375)
T ss_pred ceEEEEEEEEEEC--CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHCCE
Confidence 3589999999994 4679999999999999999999999999999999999998 689999999998642 2346789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 048718 590 GFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMV 669 (1118)
Q Consensus 590 gyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl 669 (1118)
|||||++.+||++||+|||.|+.+.+ ..++.+...+++++++.+||.+..++++.+ |||||||||+|||||+
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~-----LSgGq~QRVaLARaL~ 160 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKPHQ-----LSGGQQQRVAIARAVV 160 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHHHHHHHHh
Confidence 99999999999999999999987533 234555566789999999999999988866 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 670 MEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 670 ~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
.+|+||||||||++||+.++..+.+.|+++.++ |.|+|++||++.+ +..++|++++|.+ |+++..|+++++
T Consensus 161 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~e-a~~laDri~vl~~-G~i~~~g~~~~i 232 (375)
T PRK09452 161 NKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEE-ALTMSDRIVVMRD-GRIEQDGTPREI 232 (375)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEEcCHHHH
Confidence 999999999999999999999999999999865 9999999999976 4689999999976 699999999876
No 37
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=3.5e-42 Score=366.92 Aligned_cols=208 Identities=26% Similarity=0.408 Sum_probs=180.6
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh------hhhc
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI------QSYK 586 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------~~~r 586 (1118)
++++||+++|+++.+.+|+|+|++|++||+++|+|||||||||||++|+|+++ +++|+|.++|+++.. ..++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLTRLRGREIPFLR 79 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehhhcChhHHHHHH
Confidence 67899999995333579999999999999999999999999999999999997 689999999987632 1256
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 048718 587 RIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGL 666 (1118)
Q Consensus 587 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIAr 666 (1118)
+.++|++|++.+++.+||.||+.++...+ .....+..+++.++++.+||.+..++.+++ |||||||||+|||
T Consensus 80 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~lar 151 (216)
T TIGR00960 80 RHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALPMQ-----LSGGEQQRVAIAR 151 (216)
T ss_pred HhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHHHHHH
Confidence 78999999999999999999999876532 223334455688999999999888887765 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcE
Q 048718 667 EMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGV 732 (1118)
Q Consensus 667 ALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~ 732 (1118)
||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +.+++|++++|.+ |+
T Consensus 152 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~-~~~~~d~i~~l~~-G~ 215 (216)
T TIGR00960 152 AIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINL-VETYRHRTLTLSR-GR 215 (216)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEeC-Cc
Confidence 9999999999999999999999999999999987779999999999875 4578999999976 44
No 38
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.6e-42 Score=366.02 Aligned_cols=216 Identities=30% Similarity=0.447 Sum_probs=188.0
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh--hhhcCeEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI--QSYKRIIG 590 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~Ig 590 (1118)
|+++|+++.|. ++++|+|+||+|++||+++|+||||||||||+++|+|+++ +++|+|.++|.+... ..+++.++
T Consensus 1 i~~~~~~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYG--DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVREPREVRRRIG 76 (220)
T ss_pred CEEEEEEEEEC--CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCcChHHHhhcEE
Confidence 46899999994 4679999999999999999999999999999999999987 689999999987532 24567899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
|++|++.+++.+||+||+.+....+ .....+....++++++.+||.+..++++++ |||||||||+||+||+.
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qr~~la~al~~ 148 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLVKT-----YSGGMRRRLEIARSLVH 148 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChhh-----CCHHHHHHHHHHHHHhc
Confidence 9999999999999999999876432 223333445688999999999888888766 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.+.+|++++|.+ |++++.|+++++
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~-~~~~~d~i~~l~~-G~i~~~~~~~~~ 219 (220)
T cd03265 149 RPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEE-AEQLCDRVAIIDH-GRIIAEGTPEEL 219 (220)
T ss_pred CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEeC-CEEEEeCChHHc
Confidence 99999999999999999999999999999876 8999999999875 4578999999976 689998887653
No 39
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-42 Score=367.37 Aligned_cols=219 Identities=30% Similarity=0.446 Sum_probs=190.5
Q ss_pred eEEEEEeEEEEEcCCc--ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChh----h
Q 048718 511 IEVAFKDLTITLKGKN--KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQ----S 584 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~--k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~----~ 584 (1118)
..++++||++.|++++ .++|+||||+|.+||+++|+|+||||||||+++|+|+.+ +++|+|.++|++.... .
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~~~~~~~~~ 79 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPLAPKKRAKA 79 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCcccCccccchh
Confidence 3588999999996432 259999999999999999999999999999999999998 6899999999765432 4
Q ss_pred hcCeEEEEcCCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHH
Q 048718 585 YKRIIGFVPQDD--IVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH-IRDSLVGTVEKRGISGGQRKR 661 (1118)
Q Consensus 585 ~r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~-~~dt~vg~~~~rgLSGGERQR 661 (1118)
+++.|.+||||+ .+.|..||++.|.-++.. .+..+.++ ++.++++.+||.. .+++++.+ ||||||||
T Consensus 80 ~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~~~--~i~~~L~~VgL~~~~l~R~P~e-----LSGGQ~QR 149 (252)
T COG1124 80 FYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKSQQ--RIAELLDQVGLPPSFLDRRPHE-----LSGGQRQR 149 (252)
T ss_pred hccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHHHH--HHHHHHHHcCCCHHHHhcCchh-----cChhHHHH
Confidence 678899999997 478999999999888754 23444443 3899999999964 56776655 99999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 662 VNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 662 VsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
|+|||||+.+|++||+|||||+||+..+.+|+++|.++.++ +.|.|+|+||.+. +..+|||++||++ |++++.++..
T Consensus 150 iaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~-v~~~cdRi~Vm~~-G~ivE~~~~~ 227 (252)
T COG1124 150 IAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLAL-VEHMCDRIAVMDN-GQIVEIGPTE 227 (252)
T ss_pred HHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHH-HHHHhhheeeeeC-CeEEEeechh
Confidence 99999999999999999999999999999999999999865 9999999999985 5789999999986 6999999998
Q ss_pred hHH
Q 048718 741 KVE 743 (1118)
Q Consensus 741 ~l~ 743 (1118)
++.
T Consensus 228 ~l~ 230 (252)
T COG1124 228 ELL 230 (252)
T ss_pred hhh
Confidence 875
No 40
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.1e-41 Score=382.30 Aligned_cols=218 Identities=28% Similarity=0.411 Sum_probs=191.5
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh--hhhcCeE
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI--QSYKRII 589 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~I 589 (1118)
.++++||++.|. ++.+|+||||+|++||+++|+|||||||||||++|+|+++ |++|+|.++|.++.. ...++.+
T Consensus 4 ~i~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYG--DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPVPSRARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeC--CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcccHHHHhhcE
Confidence 588999999994 4679999999999999999999999999999999999997 689999999987632 2356789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 048718 590 GFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMV 669 (1118)
Q Consensus 590 gyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl 669 (1118)
||++|++.+++.+||+||+.+....+ .....+...+++++++.++|.+..++.+++ |||||||||+||+||+
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~-----LSgG~~qrv~la~al~ 151 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRVAL-----LSGGMKRRLTLARALI 151 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCchhh-----CCHHHHHHHHHHHHHh
Confidence 99999999999999999998755432 123334445678899999999888888876 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 670 MEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 670 ~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++++ +.+++|++++|.+ |++++.|+++++.
T Consensus 152 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~-~~~~~d~i~~l~~-G~i~~~g~~~~~~ 223 (303)
T TIGR01288 152 NDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEE-AERLCDRLCVLES-GRKIAEGRPHALI 223 (303)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHH-HHHhCCEEEEEEC-CEEEEEcCHHHHH
Confidence 9999999999999999999999999999998789999999999975 5678999999976 6899999998874
No 41
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.7e-42 Score=363.99 Aligned_cols=211 Identities=33% Similarity=0.491 Sum_probs=182.6
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-hhhcCeEEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-QSYKRIIGF 591 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Igy 591 (1118)
++++||++.|. ++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |.+|+|.++|+++.. ...++.++|
T Consensus 1 l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYG--SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTGVPPERRNIGM 76 (213)
T ss_pred CeeeeeEEEeC--CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCcCchhhccEEE
Confidence 46889999994 3679999999999999999999999999999999999997 689999999987642 224567999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 048718 592 VPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVME 671 (1118)
Q Consensus 592 V~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~ 671 (1118)
++|++.+++.+||+||+.++.... ..........++++++.+||.+..++.+.+ |||||||||+|||||+.+
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrl~la~al~~~ 148 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYPHE-----LSGGQQQRVALARALARE 148 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcChhh-----CCHHHHHHHHHHHHHhcC
Confidence 999999999999999999875432 123334445688999999999888887766 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEec
Q 048718 672 PSLLILDEPTSGLDSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHG 737 (1118)
Q Consensus 672 P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G 737 (1118)
|++|||||||+|||+.++..+.+.|+++++ .|+|||+++|+++. +.+.+|++++|.+ |++++.|
T Consensus 149 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 149 PSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEE-ALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH-HHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999999999999999986 48999999999875 4578999999976 6787655
No 42
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-41 Score=388.16 Aligned_cols=219 Identities=27% Similarity=0.438 Sum_probs=191.7
Q ss_pred EEEEeEEEEEcC--CcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh------hh
Q 048718 513 VAFKDLTITLKG--KNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI------QS 584 (1118)
Q Consensus 513 l~~knLs~~~~~--~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------~~ 584 (1118)
|+++||+++|+. .++++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.++.. ..
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~ 79 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLTALSEKELRK 79 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHH
Confidence 689999999952 23679999999999999999999999999999999999998 689999999987642 12
Q ss_pred hcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 048718 585 YKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNV 664 (1118)
Q Consensus 585 ~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsI 664 (1118)
+++.||||||++.+++.+||+||+.++.... .....+...+++++++.+||.+..++++.+ |||||||||+|
T Consensus 80 ~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----LSgGq~qRv~l 151 (343)
T PRK11153 80 ARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYPAQ-----LSGGQKQRVAI 151 (343)
T ss_pred HhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHHHH
Confidence 4678999999999999999999999986532 233444556789999999999888887765 99999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 665 GLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 665 ArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.+++|++++|.+ |++++.|+++++.
T Consensus 152 AraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~-i~~~~d~v~~l~~-G~i~~~g~~~~~~ 229 (343)
T PRK11153 152 ARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDV-VKRICDRVAVIDA-GRLVEQGTVSEVF 229 (343)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999765 9999999999975 5678999999976 6899999987763
No 43
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-41 Score=364.24 Aligned_cols=215 Identities=28% Similarity=0.411 Sum_probs=185.4
Q ss_pred EEEEeEEEEEcCCc--ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEE
Q 048718 513 VAFKDLTITLKGKN--KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIG 590 (1118)
Q Consensus 513 l~~knLs~~~~~~~--k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 590 (1118)
++++||++.|.+.. +++|+|+||+|++||+++|+||||||||||+++|+|+.+ +.+|+|.++|+++. ..++.++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~--~~~~~i~ 76 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVT--GPGPDRG 76 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECc--cccCcEE
Confidence 46889999995311 579999999999999999999999999999999999987 68999999998764 3467799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
||+|++.+++.+||+||+.++...+ ..........++++++.+||.+..++.+++ |||||||||+||+||+.
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrl~la~al~~ 148 (220)
T cd03293 77 YVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYPHQ-----LSGGMRQRVALARALAV 148 (220)
T ss_pred EEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCccc-----CCHHHHHHHHHHHHHHc
Confidence 9999999999899999999875432 123333445688999999998888887765 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEec-CcEEEEecChh
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAK-GGVIVYHGPVK 740 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~-GG~iv~~G~~~ 740 (1118)
+|++|||||||+|||+.++..+.+.|+++.+ .|+|||++||+++. +.+.+|++++|.+ +|++++.++++
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDE-AVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH-HHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999865 48999999999875 4578999999984 47999888753
No 44
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1e-41 Score=367.67 Aligned_cols=219 Identities=26% Similarity=0.440 Sum_probs=187.6
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hh-hcCe
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QS-YKRI 588 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~-~r~~ 588 (1118)
++++||++.|+ ++.+|+|+|++|++||+++|+|||||||||||++|+|+++ +.+|+|.++|.++.. .. .+..
T Consensus 1 l~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (236)
T cd03219 1 LEVRGLTKRFG--GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITGLPPHEIARLG 76 (236)
T ss_pred CeeeeeEEEEC--CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCCCCHHHHHhcC
Confidence 36789999994 3679999999999999999999999999999999999997 689999999987642 12 2456
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhccCCC-------CCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 048718 589 IGFVPQDDIVHGNLTVEENLWFSARCRLSAD-------LPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKR 661 (1118)
Q Consensus 589 IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~-------~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQR 661 (1118)
++|++|++.+++.+||+||+.+......... ....+....++++++.+||.+..++.+.+ ||||||||
T Consensus 77 i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qr 151 (236)
T cd03219 77 IGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGE-----LSYGQQRR 151 (236)
T ss_pred EEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhh-----CCHHHHHH
Confidence 9999999999999999999998764321110 01233445688999999999888887765 99999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhh
Q 048718 662 VNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKK 741 (1118)
Q Consensus 662 VsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~ 741 (1118)
|+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +.+++|++++|.+ |++++.|++++
T Consensus 152 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~-~~~~~d~i~~l~~-G~i~~~~~~~~ 229 (236)
T cd03219 152 LEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDV-VMSLADRVTVLDQ-GRVIAEGTPDE 229 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEEEeC-CEEEeecCHHH
Confidence 999999999999999999999999999999999999988779999999999975 5578999999976 68999998876
Q ss_pred H
Q 048718 742 V 742 (1118)
Q Consensus 742 l 742 (1118)
+
T Consensus 230 ~ 230 (236)
T cd03219 230 V 230 (236)
T ss_pred h
Confidence 5
No 45
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-41 Score=391.79 Aligned_cols=219 Identities=27% Similarity=0.405 Sum_probs=195.0
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-hhhcCeE
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-QSYKRII 589 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~I 589 (1118)
..|+++|+++.|. ++.+|+|+||+|++||+++|+|||||||||||++|+|+.+ +++|+|.++|+++.. ...++.|
T Consensus 18 ~~l~l~~v~~~~~--~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~~~~r~i 93 (377)
T PRK11607 18 PLLEIRNLTKSFD--GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDLSHVPPYQRPI 93 (377)
T ss_pred ceEEEEeEEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHCCE
Confidence 3589999999994 4679999999999999999999999999999999999998 689999999988642 3456789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 048718 590 GFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMV 669 (1118)
Q Consensus 590 gyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl 669 (1118)
|||||++.+||++||.|||.|+.+.+ ..++.+.+++++++++.+||.+..++++.+ |||||||||+|||||+
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~-----LSgGq~QRVaLARAL~ 165 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKPHQ-----LSGGQRQRVALARSLA 165 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHHh
Confidence 99999999999999999999987543 234555667899999999999988888765 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 670 MEPSLLILDEPTSGLDSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 670 ~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
.+|+||||||||++||+.++..+.+.|+++.+ .|.|+|++|||+++ +..++|++++|.+ |+++..|+++++.
T Consensus 166 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e-a~~laDri~vl~~-G~i~~~g~~~~~~ 238 (377)
T PRK11607 166 KRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEE-AMTMAGRIAIMNR-GKFVQIGEPEEIY 238 (377)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH-HHHhCCEEEEEeC-CEEEEEcCHHHHH
Confidence 99999999999999999999999999998875 49999999999875 4689999999976 6999999998763
No 46
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-41 Score=367.74 Aligned_cols=220 Identities=30% Similarity=0.444 Sum_probs=188.3
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-hhhcCeEE
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-QSYKRIIG 590 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Ig 590 (1118)
.++++||++.|+ ++.+|+|||++|++||+++|+|||||||||||++|+|+++ +++|+|.++|.++.. ...++.++
T Consensus 2 ~l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~ 77 (239)
T cd03296 2 SIEVRNVSKRFG--DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDATDVPVQERNVG 77 (239)
T ss_pred EEEEEeEEEEEC--CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCccccceE
Confidence 478999999995 3679999999999999999999999999999999999997 689999999987642 22356799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLS-ADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMV 669 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~-~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl 669 (1118)
|++|++.+++.+||+||+.++...+.. ......+..+.++++++.+||.+..++.+++ |||||||||+||+||+
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~al~ 152 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQ-----LSGGQRQRVALARALA 152 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhh-----CCHHHHHHHHHHHHHh
Confidence 999999999999999999987543211 0012233345678999999998888887765 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 670 MEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 670 ~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.+.+|++++|.+ |++++.|+++++
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~-~~~~~d~i~~l~~-G~i~~~~~~~~~ 224 (239)
T cd03296 153 VEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEE-ALEVADRVVVMNK-GRIEQVGTPDEV 224 (239)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CeEEEecCHHHH
Confidence 999999999999999999999999999999865 8999999999875 4578999999976 689999988765
No 47
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-41 Score=390.94 Aligned_cols=218 Identities=28% Similarity=0.417 Sum_probs=192.8
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-hhhcCeEE
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-QSYKRIIG 590 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Ig 590 (1118)
.++++||+++|. ++.+|+|+||+|++||+++|+|||||||||||++|+|+++ |++|+|.++|+++.. ...++.||
T Consensus 3 ~l~i~~l~~~~~--~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYG--DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRMNDVPPAERGVG 78 (369)
T ss_pred EEEEEEEEEEeC--CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHhHCCEE
Confidence 478999999994 4679999999999999999999999999999999999998 689999999988642 22356799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
||+|++.+++++||+||+.|+...+ .....+..++++++++.+||.+..++++.+ |||||||||+|||||+.
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~-----LSgGq~QRvaLAraL~~ 150 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVA 150 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCChhh-----CCHHHHHHHHHHHHHhc
Confidence 9999999999999999999986532 233445556789999999999888888876 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
+|+||||||||+|||+.++..+.+.|+++.++ |.|+|++||++++ +..++|++++|.+ |++++.|+++++.
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~-~~~~~d~i~vl~~-G~i~~~g~~~~i~ 222 (369)
T PRK11000 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVE-AMTLADKIVVLDA-GRVAQVGKPLELY 222 (369)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEEcCHHHHH
Confidence 99999999999999999999999999999765 8999999999875 5688999999976 6999999998763
No 48
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-41 Score=377.67 Aligned_cols=230 Identities=26% Similarity=0.408 Sum_probs=194.3
Q ss_pred EEEEeEEEEEcCCc---ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC-------h
Q 048718 513 VAFKDLTITLKGKN---KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS-------I 582 (1118)
Q Consensus 513 l~~knLs~~~~~~~---k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~-------~ 582 (1118)
|+++||++.|..+. +.+|+||||+|++||+++|+||||||||||+++|+|+++ +++|+|+++|.++. .
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~ 79 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVSSTSKQKEI 79 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECccccccccH
Confidence 78999999996322 359999999999999999999999999999999999998 68999999998763 1
Q ss_pred hhhcCeEEEEcCCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHH
Q 048718 583 QSYKRIIGFVPQDD--IVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-HIRDSLVGTVEKRGISGGQR 659 (1118)
Q Consensus 583 ~~~r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-~~~dt~vg~~~~rgLSGGER 659 (1118)
..+++.||||+|++ .+++ .||.||+.|+.... +.+..+.+.++.++++.+||. +..++.+.. ||||||
T Consensus 80 ~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~-----LSgGqk 150 (288)
T PRK13643 80 KPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKSPFE-----LSGGQM 150 (288)
T ss_pred HHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCCccc-----CCHHHH
Confidence 24577899999986 4554 69999999986432 234555566789999999996 466766654 999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecCh
Q 048718 660 KRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPV 739 (1118)
Q Consensus 660 QRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~ 739 (1118)
|||+||++|+.+|+||||||||+|||+.++..+.+.|++++++|.|||++||+++. +.+++|++++|.+ |++++.|++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~-~~~~~dri~~l~~-G~i~~~g~~ 228 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDD-VADYADYVYLLEK-GHIISCGTP 228 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999999999999998779999999999875 4578999999976 699999999
Q ss_pred hhHH---HHHHhcCCCCCC
Q 048718 740 KKVE---EYFASLGITVPD 755 (1118)
Q Consensus 740 ~~l~---~yf~~lG~~~p~ 755 (1118)
+++. +.+...|+.+|.
T Consensus 229 ~~~~~~~~~~~~~~~~~p~ 247 (288)
T PRK13643 229 SDVFQEVDFLKAHELGVPK 247 (288)
T ss_pred HHHHcCHHHHHHcCCCCCh
Confidence 8863 345566766553
No 49
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.5e-41 Score=365.52 Aligned_cols=216 Identities=26% Similarity=0.471 Sum_probs=187.3
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hh-hcCe
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QS-YKRI 588 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~-~r~~ 588 (1118)
++++||++.|. ++.+|+|+||++++||+++|+|||||||||||++|+|+++ +++|+|.++|.+... .. .++.
T Consensus 1 l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~ 76 (232)
T cd03218 1 LRAENLSKRYG--KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITKLPMHKRARLG 76 (232)
T ss_pred CeEEEEEEEeC--CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccCCHhHHHhcc
Confidence 46889999994 4679999999999999999999999999999999999998 689999999987532 12 3457
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 048718 589 IGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEM 668 (1118)
Q Consensus 589 IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArAL 668 (1118)
++|++|++.+++.+||+||+.+....+ .....+....++++++.+||.+..++.+.+ |||||||||+||+||
T Consensus 77 i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~al 148 (232)
T cd03218 77 IGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSKASS-----LSGGERRRVEIARAL 148 (232)
T ss_pred EEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHHHHHHHH
Confidence 999999999999999999999875432 122334445688999999999888887765 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 669 VMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 669 l~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
+.+|++|||||||+|||+.++..+.+.|+++.++|+|||++||+++. +.+.+|++++|.+ |++++.|+.+++
T Consensus 149 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~-~~~~~d~i~~l~~-G~i~~~~~~~~~ 220 (232)
T cd03218 149 ATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRE-TLSITDRAYIIYE-GKVLAEGTPEEI 220 (232)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEEC-CeEEEEeCHHHh
Confidence 99999999999999999999999999999998779999999999874 5688999999976 689999988765
No 50
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.3e-41 Score=363.10 Aligned_cols=217 Identities=30% Similarity=0.476 Sum_probs=187.4
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh--hhhcCeEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI--QSYKRIIG 590 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~Ig 590 (1118)
|+++||++.|.++.+++|+|+||+|++||+++|+|||||||||||++|+|+++ +++|+|.++|.++.. ..+++.++
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRTDRKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccchHHHhhhEE
Confidence 46889999995322679999999999999999999999999999999999997 689999999987642 34567799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
|++|++.+++.+||+||+.+....+ .....+..+.++++++.+||.+..++.+++ |||||||||+||+||+.
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al~~ 150 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRART-----LSGGMKRKLSLAIALIG 150 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhChhhh-----CCHHHHHHHHHHHHHhc
Confidence 9999999999999999999875433 223333445688999999998888887765 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|+++. +.+.+|++++|.+ |++++.|+++++
T Consensus 151 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~-~~~~~d~i~~l~~-g~i~~~~~~~~~ 219 (220)
T cd03263 151 GPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDE-AEALCDRIAIMSD-GKLRCIGSPQEL 219 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHH-HHHhcCEEEEEEC-CEEEecCCHHHc
Confidence 9999999999999999999999999999875 5999999999975 4578999999976 689999987764
No 51
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-41 Score=367.67 Aligned_cols=221 Identities=29% Similarity=0.462 Sum_probs=186.5
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh------hhhc
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI------QSYK 586 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------~~~r 586 (1118)
++++||++.|.+ ++++|+|+||+|++||+++|+|||||||||||++|+|+++ +++|+|.++|+++.. ..++
T Consensus 1 l~~~~l~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (241)
T cd03256 1 IEVENLSKTYPN-GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINKLKGKALRQLR 77 (241)
T ss_pred CEEeeEEEecCC-ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccccCHhHHHHHH
Confidence 368899999942 2679999999999999999999999999999999999997 689999999987642 2356
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHhhcc-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 048718 587 RIIGFVPQDDIVHGNLTVEENLWFSARCRL-----SADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKR 661 (1118)
Q Consensus 587 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~-----~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQR 661 (1118)
+.++|++|++.+++.+||+||+.++..... ............++++++.+||.+..++.+.+ ||||||||
T Consensus 78 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qr 152 (241)
T cd03256 78 RQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQ-----LSGGQQQR 152 (241)
T ss_pred hccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCccc-----CCHHHHHH
Confidence 789999999999999999999987642110 00111122345678899999998877777765 99999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 662 VNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 662 VsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
|+||+||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.+++|++++|.+ |++++.|+++
T Consensus 153 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~-~~~~~d~v~~l~~-G~i~~~~~~~ 230 (241)
T cd03256 153 VAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDL-AREYADRIVGLKD-GRIVFDGPPA 230 (241)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEeecCHH
Confidence 99999999999999999999999999999999999999764 8999999999986 5578999999976 6899999987
Q ss_pred hHH
Q 048718 741 KVE 743 (1118)
Q Consensus 741 ~l~ 743 (1118)
++.
T Consensus 231 ~~~ 233 (241)
T cd03256 231 ELT 233 (241)
T ss_pred Hhh
Confidence 753
No 52
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-41 Score=374.82 Aligned_cols=220 Identities=27% Similarity=0.414 Sum_probs=188.5
Q ss_pred EEEEEeEEEEEcCC---cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-----h
Q 048718 512 EVAFKDLTITLKGK---NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-----Q 583 (1118)
Q Consensus 512 ~l~~knLs~~~~~~---~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-----~ 583 (1118)
.|+++||++.|+.. .+++|+||||+|++||+++|+||||||||||+++|+|+++ |.+|+|.++|.++.. .
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~ 79 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDITDKKVKLS 79 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECCCcCccHH
Confidence 37899999999532 1479999999999999999999999999999999999998 689999999988642 2
Q ss_pred hhcCeEEEEcCCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCccCCCCCHHHHH
Q 048718 584 SYKRIIGFVPQDDI-VHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ--HIRDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 584 ~~r~~IgyV~Qd~~-l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~--~~~dt~vg~~~~rgLSGGERQ 660 (1118)
.+++.||||||++. .+..+||+|||.|+.... +..+.+..++++++++.+||. +..++.+.+ |||||||
T Consensus 80 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~-----LSgGq~q 151 (287)
T PRK13637 80 DIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSPFE-----LSGGQKR 151 (287)
T ss_pred HHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCccc-----CCHHHHH
Confidence 45678999999973 233579999999875432 344555566789999999997 667777655 9999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecCh
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPV 739 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~ 739 (1118)
||+||+||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.+++|++++|.+ |++++.|++
T Consensus 152 rv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~-~~~~~drv~~l~~-G~i~~~g~~ 229 (287)
T PRK13637 152 RVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMED-VAKLADRIIVMNK-GKCELQGTP 229 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999999999999999865 9999999999875 4578999999976 689999999
Q ss_pred hhHH
Q 048718 740 KKVE 743 (1118)
Q Consensus 740 ~~l~ 743 (1118)
+++.
T Consensus 230 ~~~~ 233 (287)
T PRK13637 230 REVF 233 (287)
T ss_pred HHHH
Confidence 8763
No 53
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-41 Score=364.58 Aligned_cols=218 Identities=29% Similarity=0.464 Sum_probs=188.3
Q ss_pred EEEEeEEEEEcCC--cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh------hh
Q 048718 513 VAFKDLTITLKGK--NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI------QS 584 (1118)
Q Consensus 513 l~~knLs~~~~~~--~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------~~ 584 (1118)
|+++||++.|.+. .+++|+|+||+|++||+++|+||||||||||+++|+|+++ +++|+|.++|.++.. ..
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~ 79 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTLLSGKELRK 79 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHHHHHH
Confidence 6789999999532 1279999999999999999999999999999999999998 689999999987642 12
Q ss_pred hcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 048718 585 YKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNV 664 (1118)
Q Consensus 585 ~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsI 664 (1118)
+++.++|++|++.+++.+||+||+.+....+ ..........++++++.+||.+..++.+.+ |||||||||+|
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~l 151 (233)
T cd03258 80 ARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAYPAQ-----LSGGQKQRVGI 151 (233)
T ss_pred HHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcChhh-----CCHHHHHHHHH
Confidence 3678999999999999999999999875432 123333445688999999999888887765 99999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 665 GLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 665 ArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
|+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.+.+|++++|.+ |++++.|+.+++
T Consensus 152 a~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~-~~~~~d~i~~l~~-G~i~~~~~~~~~ 228 (233)
T cd03258 152 ARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEV-VKRICDRVAVMEK-GEVVEEGTVEEV 228 (233)
T ss_pred HHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEecCHHHH
Confidence 99999999999999999999999999999999999865 8999999999875 5678999999975 689999987765
No 54
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=3.3e-41 Score=378.19 Aligned_cols=218 Identities=27% Similarity=0.416 Sum_probs=192.9
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh--hhhcCeE
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI--QSYKRII 589 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~I 589 (1118)
.++++|++++|+ ++.+|+|+||+|++||+++|+|||||||||||++|+|+++ +++|+|.++|.++.. ...++.+
T Consensus 2 ~l~~~~l~~~~~--~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~~~~~~~~~~i 77 (301)
T TIGR03522 2 SIRVSSLTKLYG--TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVLQNPKEVQRNI 77 (301)
T ss_pred EEEEEEEEEEEC--CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccChHHHHhce
Confidence 478999999994 4679999999999999999999999999999999999998 689999999987642 3456789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 048718 590 GFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMV 669 (1118)
Q Consensus 590 gyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl 669 (1118)
||+||++.+++.+||.|||.+.+..+ +.+..+...+++++++.+||.+..+++++. |||||||||+||+||+
T Consensus 78 g~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrv~la~al~ 149 (301)
T TIGR03522 78 GYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKIGQ-----LSKGYRQRVGLAQALI 149 (301)
T ss_pred EEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCchhh-----CCHHHHHHHHHHHHHh
Confidence 99999999999999999999876543 233344455689999999999988888876 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHHH
Q 048718 670 MEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVEE 744 (1118)
Q Consensus 670 ~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~~ 744 (1118)
.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++++ +.+++|++++|.+ |++++.|+.+++..
T Consensus 150 ~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~~-~~~~~d~i~~l~~-G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 150 HDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQE-VEAICDRVIIINK-GKIVADKKLDELSA 221 (301)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-HHHhCCEEEEEEC-CEEEEeCCHHHHHH
Confidence 99999999999999999999999999999864 7999999999975 5689999999976 69999999988754
No 55
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.6e-41 Score=364.37 Aligned_cols=216 Identities=27% Similarity=0.389 Sum_probs=182.8
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC-----CCCCceeEEEECCEecCh-----
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRV-----PGCIMSGTILVNGKVASI----- 582 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~-----~~~~~sG~I~inG~~~~~----- 582 (1118)
|+++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|++ + +.+|+|.++|+++..
T Consensus 1 i~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g~~~~~~~~~~ 76 (227)
T cd03260 1 IELRDLNVYYG--DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDGKDIYDLDVDV 76 (227)
T ss_pred CEEEEEEEEcC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECCEEhhhcchHH
Confidence 46899999994 357999999999999999999999999999999999998 5 689999999987532
Q ss_pred hhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 048718 583 QSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRV 662 (1118)
Q Consensus 583 ~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRV 662 (1118)
..+++.++|++|++.++ .+||+||+.++...+. .....+..++++++++.+||.+..++.+. ++.|||||||||
T Consensus 77 ~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv 150 (227)
T cd03260 77 LELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRL 150 (227)
T ss_pred HHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHH
Confidence 23567899999999888 7999999998754321 11222234568899999999877666530 235999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhh
Q 048718 663 NVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKK 741 (1118)
Q Consensus 663 sIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~ 741 (1118)
+||+||+.+|++|||||||+|||+.++..+.+.|++++++ .|||++||+++. +.+.+|++++|.+ |++++.|++++
T Consensus 151 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~-~~~~~d~i~~l~~-G~i~~~g~~~~ 226 (227)
T cd03260 151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQ-AARVADRTAFLLN-GRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHH-HHHhCCEEEEEeC-CEEEEecCccc
Confidence 9999999999999999999999999999999999999876 999999999875 4578999999976 68999998764
No 56
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=2.4e-41 Score=360.61 Aligned_cols=213 Identities=31% Similarity=0.459 Sum_probs=184.6
Q ss_pred EEEEeEEEEEcCCc--ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh--hhhcCe
Q 048718 513 VAFKDLTITLKGKN--KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI--QSYKRI 588 (1118)
Q Consensus 513 l~~knLs~~~~~~~--k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~ 588 (1118)
++++||++.|++.. +++|+|+|++|++||+++|+|+|||||||||++|+|+++ +++|+|.++|+++.. ..+++.
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~ 79 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVVKEPAEARRR 79 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcccCHHHHHhh
Confidence 67899999995321 179999999999999999999999999999999999998 689999999987642 345678
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 048718 589 IGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEM 668 (1118)
Q Consensus 589 IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArAL 668 (1118)
++|++|++.+++.+||+||+.+....+ .....+....++++++.+||.+..++.+++ |||||||||+|||||
T Consensus 80 i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral 151 (218)
T cd03266 80 LGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRVGG-----FSTGMRQKVAIARAL 151 (218)
T ss_pred EEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhhhh-----cCHHHHHHHHHHHHH
Confidence 999999999999999999998865432 223444456788999999999888887766 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEec
Q 048718 669 VMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHG 737 (1118)
Q Consensus 669 l~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G 737 (1118)
+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||++||+++. +.+.+|++++|.+ |++++.|
T Consensus 152 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~-~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 152 VHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQE-VERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred hcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhcCEEEEEEC-CEEeecC
Confidence 99999999999999999999999999999997779999999999875 4578999999976 6787654
No 57
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-41 Score=359.21 Aligned_cols=210 Identities=28% Similarity=0.451 Sum_probs=182.7
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFV 592 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV 592 (1118)
++++||++.|. ++.+|+|+||+|++||+++|+|||||||||||++|+|+++ +++|+|.++|.++.. ..++.++|+
T Consensus 1 l~~~~l~~~~~--~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~-~~~~~i~~~ 75 (210)
T cd03269 1 LEVENVTKRFG--RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDI-AARNRIGYL 75 (210)
T ss_pred CEEEEEEEEEC--CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhH-HHHccEEEe
Confidence 46889999994 4679999999999999999999999999999999999987 689999999987643 456789999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCC
Q 048718 593 PQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEP 672 (1118)
Q Consensus 593 ~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P 672 (1118)
+|++.+++.+||+||+.+....+ .....+..+.++++++.+||.+..++.+.+ |||||||||+||++|+.+|
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~al~~~p 147 (210)
T cd03269 76 PEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRVEE-----LSKGNQQKVQFIAAVIHDP 147 (210)
T ss_pred ccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCcHhh-----CCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999875432 223334455688999999998888877765 9999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEec
Q 048718 673 SLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHG 737 (1118)
Q Consensus 673 ~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G 737 (1118)
++|+|||||+|||+.++..+.+.|++++++|.|||+++|+++. +.+++|++++|.+ |++++.|
T Consensus 148 ~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~-~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 148 ELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMEL-VEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH-HHHhhhEEEEEeC-CEEEecC
Confidence 9999999999999999999999999988778999999999875 4578999999976 6787654
No 58
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=2.8e-41 Score=358.92 Aligned_cols=211 Identities=30% Similarity=0.435 Sum_probs=182.8
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-hhhcCeEEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-QSYKRIIGF 591 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Igy 591 (1118)
++++||++.|. ++++|+|+||+|++||+++|+|||||||||||++|+|+++ +.+|+|.++|.++.. ...++.++|
T Consensus 1 i~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~~~~~~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFG--NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTDLPPKDRDIAM 76 (213)
T ss_pred CEEEeeEEEEC--CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCcccceEEE
Confidence 46899999995 3579999999999999999999999999999999999987 689999999987642 123467999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 048718 592 VPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVME 671 (1118)
Q Consensus 592 V~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~ 671 (1118)
++|++.+++.+||+||+.++.... .....+..+.++++++.+||.+..++.+++ |||||||||+|||||+.+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qr~~laral~~~ 148 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKPKQ-----LSGGQRQRVALGRAIVRE 148 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCChhh-----CCHHHHHHHHHHHHHhcC
Confidence 999999998999999999875432 223344455688999999998888887766 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEec
Q 048718 672 PSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHG 737 (1118)
Q Consensus 672 P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G 737 (1118)
|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++. +.+.+|++++|.+ |++++.|
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~-~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 149 PKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVE-AMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCeEEEEEC-CEEEecC
Confidence 9999999999999999999999999999864 8999999999875 4578999999976 6888765
No 59
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=2e-41 Score=379.96 Aligned_cols=207 Identities=32% Similarity=0.462 Sum_probs=183.7
Q ss_pred cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh--hhhcCeEEEEcCCCCCCCCCC
Q 048718 526 NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI--QSYKRIIGFVPQDDIVHGNLT 603 (1118)
Q Consensus 526 ~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~IgyV~Qd~~l~~~LT 603 (1118)
++.+|+||||+|++||+++|+||||||||||||+|+|+++ |++|+|.++|.++.. ..+++.+||+||++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 4679999999999999999999999999999999999998 689999999987632 345678999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 048718 604 VEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSG 683 (1118)
Q Consensus 604 V~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsG 683 (1118)
|+|||.+.+..+ +....+..++++++++.+||.+..++++++ |||||||||+||+||+.+|++|||||||+|
T Consensus 83 v~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPVGT-----YSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCchhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 999999876543 233344455789999999999888888876 999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHHH
Q 048718 684 LDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVEE 744 (1118)
Q Consensus 684 LD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~~ 744 (1118)
||+.++..+.+.|++++++|+|||++||++++ +.+++|++++|.+ |++++.|+++++.+
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~-~~~~~d~v~~l~~-G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYMEE-ADKLCDRIAIIDH-GRIIAEGTPEELKR 213 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHHH-HHHhCCEEEEEEC-CEEEEECCHHHHHH
Confidence 99999999999999998779999999999875 5678999999976 69999999988754
No 60
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=5e-42 Score=349.45 Aligned_cols=214 Identities=30% Similarity=0.442 Sum_probs=188.4
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-hhhcCeEEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-QSYKRIIGF 591 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Igy 591 (1118)
+.+++|.++|. +.=-.+++.|.+||++||+||||||||||||+|+|+.. |.+|+|+|||++... ..+.|-+++
T Consensus 2 l~L~~V~~~y~----~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~~~P~~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYG----HLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTASPPAERPVSM 75 (231)
T ss_pred ccccceEEeeC----cceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCcCCcccCChhh
Confidence 45778888884 23346889999999999999999999999999999998 689999999998643 346778999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 048718 592 VPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVME 671 (1118)
Q Consensus 592 V~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~ 671 (1118)
+||+..+|.+|||.+|+.++..-. -.-.++.+++++.++..+||..+.++.+++ |||||||||+|||+|+++
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~---LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~-----LSGGqRQRvALARclvR~ 147 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPG---LKLNAEQREKVEAAAAQVGLAGFLKRLPGE-----LSGGQRQRVALARCLVRE 147 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcc---cccCHHHHHHHHHHHHHhChhhHhhhCccc-----cCchHHHHHHHHHHHhcc
Confidence 999999999999999999986422 122345567899999999999999999987 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 672 PSLLILDEPTSGLDSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 672 P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
-+||+||||+|+|||.-+.+.+.++.++.. ++.|++|+||+++.. .+++|+++++++ |+|.+.|+.++.
T Consensus 148 ~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da-~~ia~~~~fl~~-Gri~~~g~~~~~ 217 (231)
T COG3840 148 QPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDA-ARIADRVVFLDN-GRIAAQGSTQEL 217 (231)
T ss_pred CCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHH-HHhhhceEEEeC-CEEEeeccHHHH
Confidence 999999999999999999999999999985 499999999999864 689999999986 699999998765
No 61
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-41 Score=374.27 Aligned_cols=218 Identities=25% Similarity=0.449 Sum_probs=187.4
Q ss_pred EEEEEeEEEEEcCC---cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC-------
Q 048718 512 EVAFKDLTITLKGK---NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS------- 581 (1118)
Q Consensus 512 ~l~~knLs~~~~~~---~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~------- 581 (1118)
.++++||++.|+.. .+++|+||||+|++||+++|+||||||||||+++|+|+.+ +++|+|.++|+++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~ 79 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVITAGKKNKK 79 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECccccccch
Confidence 37899999999532 1469999999999999999999999999999999999998 68999999998763
Q ss_pred hhhhcCeEEEEcCCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHH
Q 048718 582 IQSYKRIIGFVPQDD--IVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-HIRDSLVGTVEKRGISGGQ 658 (1118)
Q Consensus 582 ~~~~r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-~~~dt~vg~~~~rgLSGGE 658 (1118)
...+++.||||||++ .++ ..||+||+.|+.... .....+..++++++++.+||. +..++.+.+ |||||
T Consensus 80 ~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~-----LSgGq 150 (290)
T PRK13634 80 LKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSPFE-----LSGGQ 150 (290)
T ss_pred HHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCccc-----CCHHH
Confidence 124567899999986 455 479999999875432 234444556789999999997 567777765 99999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEec
Q 048718 659 RKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHG 737 (1118)
Q Consensus 659 RQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G 737 (1118)
||||+||+||+.+|+||||||||+|||+.++..+++.|++++++ |.|||++||+++. +.+.+|++++|.+ |++++.|
T Consensus 151 ~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~-~~~~~drv~~l~~-G~i~~~g 228 (290)
T PRK13634 151 MRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMED-AARYADQIVVMHK-GTVFLQG 228 (290)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEEC
Confidence 99999999999999999999999999999999999999999765 9999999999875 5678999999975 6999999
Q ss_pred ChhhH
Q 048718 738 PVKKV 742 (1118)
Q Consensus 738 ~~~~l 742 (1118)
+++++
T Consensus 229 ~~~~~ 233 (290)
T PRK13634 229 TPREI 233 (290)
T ss_pred CHHHH
Confidence 98876
No 62
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=6.1e-41 Score=363.15 Aligned_cols=217 Identities=26% Similarity=0.443 Sum_probs=188.3
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-----hhhcC
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-----QSYKR 587 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-----~~~r~ 587 (1118)
++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++ +++|+|.++|.++.. ..+++
T Consensus 2 l~~~~l~~~~~--~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (240)
T PRK09493 2 IEFKNVSKHFG--PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVNDPKVDERLIRQ 77 (240)
T ss_pred EEEEeEEEEEC--CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCChhHHHHhh
Confidence 67899999994 4679999999999999999999999999999999999987 689999999987642 23467
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
.++|++|++.+++.+||+||+.++.... ......+....+.++++.+||.+..++.+.+ |||||||||+||+|
T Consensus 78 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrv~la~a 150 (240)
T PRK09493 78 EAGMVFQQFYLFPHLTALENVMFGPLRV--RGASKEEAEKQARELLAKVGLAERAHHYPSE-----LSGGQQQRVAIARA 150 (240)
T ss_pred ceEEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCChHHHhcChhh-----cCHHHHHHHHHHHH
Confidence 8999999999999999999998864211 1223344455688999999998877877765 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 668 MVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 668 Ll~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
|+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||+++. +.+.+|++++|.+ |++++.|+.+++
T Consensus 151 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~-G~i~~~g~~~~~ 223 (240)
T PRK09493 151 LAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGF-AEKVASRLIFIDK-GRIAEDGDPQVL 223 (240)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEeeCCHHHH
Confidence 999999999999999999999999999999988779999999999875 4578999999976 689999998765
No 63
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=6.2e-41 Score=364.91 Aligned_cols=218 Identities=29% Similarity=0.439 Sum_probs=188.2
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---------
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI--------- 582 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--------- 582 (1118)
.++++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++ +++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~ 78 (250)
T PRK11264 3 AIEVKNLVKKFH--GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITIDTARSLSQQKG 78 (250)
T ss_pred cEEEeceEEEEC--CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccccccchhh
Confidence 378999999994 3579999999999999999999999999999999999987 689999999987531
Q ss_pred --hhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 048718 583 --QSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 583 --~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQ 660 (1118)
..+++.++|++|++.+++.+||.||+.++..... ..........++++++.+||.+..++.+++ |||||||
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~Gq~q 151 (250)
T PRK11264 79 LIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYPRR-----LSGGQQQ 151 (250)
T ss_pred HHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCChhh-----CChHHHH
Confidence 2346689999999999999999999988643211 223334445688999999998877777665 9999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
||+||+||+.+|+||||||||+|||+.++..+.+.|+++.++|.|||++||+++. +.+++|++++|.+ |++++.|+.+
T Consensus 152 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~-~~~~~d~i~~l~~-G~i~~~~~~~ 229 (250)
T PRK11264 152 RVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSF-ARDVADRAIFMDQ-GRIVEQGPAK 229 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999999999999999999998779999999999875 5678999999976 6899999987
Q ss_pred hH
Q 048718 741 KV 742 (1118)
Q Consensus 741 ~l 742 (1118)
++
T Consensus 230 ~~ 231 (250)
T PRK11264 230 AL 231 (250)
T ss_pred HH
Confidence 65
No 64
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.8e-41 Score=369.94 Aligned_cols=218 Identities=26% Similarity=0.369 Sum_probs=188.2
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcCe
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKRI 588 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~ 588 (1118)
.++++||++.|.. .+.+|+||||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. ..+++.
T Consensus 4 ~l~~~~l~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~ 80 (274)
T PRK13647 4 IIEVEDLHFRYKD-GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREVNAENEKWVRSK 80 (274)
T ss_pred eEEEEEEEEEeCC-CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEECCCCCHHHHHhh
Confidence 4789999999952 3569999999999999999999999999999999999998 689999999987642 345678
Q ss_pred EEEEcCCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 048718 589 IGFVPQDDI-VHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 589 IgyV~Qd~~-l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
|||++|++. .++.+||.||+.|+.... .....+.+.+++++++.+||.+..++.+.+ |||||||||+||+|
T Consensus 81 i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----LSgG~~qrv~lara 152 (274)
T PRK13647 81 VGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPPYH-----LSYGQKKRVAIAGV 152 (274)
T ss_pred EEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCChhh-----CCHHHHHHHHHHHH
Confidence 999999973 345689999999875421 233444455688999999999888888766 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 668 MVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 668 Ll~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
|+.+|++|||||||+|||+.++.++.+.|++++++|.|||++||+++. +.+.+|++++|.+ |++++.|+++++
T Consensus 153 L~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~-~~~~~d~i~~l~~-G~i~~~g~~~~~ 225 (274)
T PRK13647 153 LAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDL-AAEWADQVIVLKE-GRVLAEGDKSLL 225 (274)
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEECCHHHh
Confidence 999999999999999999999999999999998779999999999875 4578999999976 689999998654
No 65
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=3.5e-41 Score=360.09 Aligned_cols=214 Identities=30% Similarity=0.517 Sum_probs=183.6
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hh-hcCe
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QS-YKRI 588 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~-~r~~ 588 (1118)
|+++||+++|+ ++++|+|+||+|++||+++|+|||||||||||++|+|+++ +++|+|.++|.++.. .. .++.
T Consensus 1 l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (222)
T cd03224 1 LEVENLNAGYG--KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITGLPPHERARAG 76 (222)
T ss_pred CEEeeEEeecC--CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCCCCHHHHHhcC
Confidence 46899999994 3579999999999999999999999999999999999998 689999999987632 12 3567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHc-CCCccccccccCccCCCCCHHHHHHHHHHHH
Q 048718 589 IGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESL-GLQHIRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 589 IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~l-gL~~~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
++|++|++.+++.+||+||+.+...... ..+....++++++.+ ++.+..++.+.+ |||||||||+||||
T Consensus 77 i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~~~-----LS~G~~qrv~lara 146 (222)
T cd03224 77 IGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLAGT-----LSGGEQQMLAIARA 146 (222)
T ss_pred eEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCchhh-----CCHHHHHHHHHHHH
Confidence 9999999999999999999998754321 122334567788888 577777777665 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 668 MVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 668 Ll~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
|+.+|++|+|||||+|||+.++..+++.|++++++|.|||++||+++. +.+++|++++|.+ |++++.|+.+++
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~-G~i~~~~~~~~~ 219 (222)
T cd03224 147 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARF-ALEIADRAYVLER-GRVVLEGTAAEL 219 (222)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhccEEEEeeC-CeEEEeCCHHHH
Confidence 999999999999999999999999999999988778999999999875 4588999999976 689999988765
No 66
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.8e-41 Score=361.03 Aligned_cols=215 Identities=23% Similarity=0.359 Sum_probs=183.2
Q ss_pred EEEEEeEEEEEcCCc--ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---h---
Q 048718 512 EVAFKDLTITLKGKN--KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---Q--- 583 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~--k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~--- 583 (1118)
.++++||++.|+.+. +++|+|+||+|++||+++|+|||||||||||++|+|+++ +++|+|.++|+++.. .
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPMSKLSSAAKA 82 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCCHHHHH
Confidence 488999999996322 579999999999999999999999999999999999997 689999999987642 1
Q ss_pred hh-cCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 048718 584 SY-KRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRV 662 (1118)
Q Consensus 584 ~~-r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRV 662 (1118)
.+ ++.++|++|++.+++.+||+||+.+..... .....+.+.+++++++.+||.+..++.+.+ |||||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LSgG~~qrl 154 (233)
T PRK11629 83 ELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRPSE-----LSGGERQRV 154 (233)
T ss_pred HHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHH
Confidence 12 257999999999999999999999875432 223334445788999999998887777765 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecCh
Q 048718 663 NVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPV 739 (1118)
Q Consensus 663 sIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~ 739 (1118)
+||+||+.+|+||||||||+|||+.++..+.+.|+++++ +|+|||++||+++.. ..+|++++|.+ |++++.|+.
T Consensus 155 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~--~~~~~~~~l~~-G~i~~~~~~ 229 (233)
T PRK11629 155 AIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLA--KRMSRQLEMRD-GRLTAELSL 229 (233)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH--HhhCEEEEEEC-CEEEEEecc
Confidence 999999999999999999999999999999999999875 589999999998763 34689998865 689887764
No 67
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=3.5e-41 Score=359.37 Aligned_cols=207 Identities=31% Similarity=0.470 Sum_probs=178.0
Q ss_pred EEEEeEEEEEcCCc--ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChh------h
Q 048718 513 VAFKDLTITLKGKN--KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQ------S 584 (1118)
Q Consensus 513 l~~knLs~~~~~~~--k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~------~ 584 (1118)
++++||++.|++++ +.+|+|+||+|++||+++|+|||||||||||++|+|+++ +++|+|.++|.++... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~ 78 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISKLSEKELAA 78 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhhcchhHHHH
Confidence 46889999995321 579999999999999999999999999999999999997 6899999999876321 1
Q ss_pred -hcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 048718 585 -YKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVN 663 (1118)
Q Consensus 585 -~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVs 663 (1118)
.++.++|++|++.+++.+||+||+.++...+ ........+.++++++.+||.+..++.+++ |||||||||+
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~ 150 (218)
T cd03255 79 FRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHYPSE-----LSGGQQQRVA 150 (218)
T ss_pred HHhhcEEEEeeccccCCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcChhh-----cCHHHHHHHH
Confidence 3467999999999999999999999876432 122333445688999999999888877765 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEecCcE
Q 048718 664 VGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAKGGV 732 (1118)
Q Consensus 664 IArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~ 732 (1118)
|||||+.+|+||||||||+|||+.++..+.+.|+++++ .|+|||++||+++. + +.+|++++|.+ |+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~v~~l~~-G~ 217 (218)
T cd03255 151 IARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-A-EYADRIIELRD-GK 217 (218)
T ss_pred HHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-H-hhhcEEEEeeC-Cc
Confidence 99999999999999999999999999999999999987 58999999999875 4 48999999976 44
No 68
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-41 Score=375.59 Aligned_cols=220 Identities=26% Similarity=0.368 Sum_probs=187.9
Q ss_pred EEEEEeEEEEEcCCc---ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC-------
Q 048718 512 EVAFKDLTITLKGKN---KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS------- 581 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~---k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~------- 581 (1118)
.|+++||++.|..+. ..+|+||||+|++||+++|+||||||||||+++|+|+++ +++|+|.++|.+..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~~~~~~~~~~ 79 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL--PDTGTIEWIFKDEKNKKKTKE 79 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEEeceeccccccccc
Confidence 378999999996322 369999999999999999999999999999999999998 68999999986531
Q ss_pred --------------------hhhhcCeEEEEcCCC-CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-
Q 048718 582 --------------------IQSYKRIIGFVPQDD-IVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ- 639 (1118)
Q Consensus 582 --------------------~~~~r~~IgyV~Qd~-~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~- 639 (1118)
...+++.||||||++ ..+...||+|||.|+.... +....+..++++++++.+||.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~ 156 (305)
T PRK13651 80 KEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELVGLDE 156 (305)
T ss_pred ccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCCh
Confidence 124567899999985 2333579999999876432 345555666789999999996
Q ss_pred ccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHh
Q 048718 640 HIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFR 719 (1118)
Q Consensus 640 ~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~ 719 (1118)
+..++.+.+ |||||||||+||++|+.+|+||||||||+|||+.++..+++.|+++.++|.|||++||+++. +.+
T Consensus 157 ~~~~~~~~~-----LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~-~~~ 230 (305)
T PRK13651 157 SYLQRSPFE-----LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDN-VLE 230 (305)
T ss_pred hhhhCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHH-HHH
Confidence 677877765 99999999999999999999999999999999999999999999998779999999999875 458
Q ss_pred ccCcEEEEecCcEEEEecChhhHH
Q 048718 720 MFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 720 ~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
.+|++++|.+ |++++.|+++++.
T Consensus 231 ~adrv~vl~~-G~i~~~g~~~~~~ 253 (305)
T PRK13651 231 WTKRTIFFKD-GKIIKDGDTYDIL 253 (305)
T ss_pred hCCEEEEEEC-CEEEEECCHHHHh
Confidence 8999999976 6899999998763
No 69
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=4.5e-41 Score=389.76 Aligned_cols=220 Identities=29% Similarity=0.450 Sum_probs=191.9
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcCe
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKRI 588 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~ 588 (1118)
.|+++||++.|. ++.+|+|+||+|++||+++|+||||||||||||+|+|+++ |.+|+|.++|+++.. ..+++.
T Consensus 3 ~L~~~nls~~y~--~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i~~~~~~~~~~~ 78 (402)
T PRK09536 3 MIDVSDLSVEFG--DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDVEALSARAASRR 78 (402)
T ss_pred eEEEeeEEEEEC--CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEcCcCCHHHHhcc
Confidence 488999999994 4789999999999999999999999999999999999998 689999999987642 456788
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhccCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 048718 589 IGFVPQDDIVHGNLTVEENLWFSARCRLSA-DLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 589 IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~-~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
||||+|++.+++.+||+||+.++...+... ........++++++++.+||.+..++.+.+ |||||||||+||||
T Consensus 79 ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~-----LSgGerQRv~IArA 153 (402)
T PRK09536 79 VASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTS-----LSGGERQRVLLARA 153 (402)
T ss_pred eEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHH
Confidence 999999999988999999999864321110 111223345789999999999988888766 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 668 MVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 668 Ll~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
|+++|+||||||||+|||+.++.+++++|++++++|+|||+++|+++. +.+++|++++|.+ |++++.|+++++
T Consensus 154 L~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~-~~~~adrii~l~~-G~iv~~G~~~ev 226 (402)
T PRK09536 154 LAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDL-AARYCDELVLLAD-GRVRAAGPPADV 226 (402)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH-HHHhCCEEEEEEC-CEEEEecCHHHH
Confidence 999999999999999999999999999999998779999999999986 4689999999976 689999999874
No 70
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=3.1e-41 Score=365.56 Aligned_cols=220 Identities=27% Similarity=0.419 Sum_probs=185.8
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh------hhhc
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI------QSYK 586 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------~~~r 586 (1118)
++++||++.|. .++++|+|+||+|++||+++|+|||||||||||++|+|+++ +++|+|.++|.++.. ..++
T Consensus 2 l~~~~l~~~~~-~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR02315 2 LEVENLSKVYP-NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRGKKLRKLR 78 (243)
T ss_pred eEEEeeeeecC-CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhhhCCHHHHHHHH
Confidence 67899999994 24679999999999999999999999999999999999997 689999999987532 1246
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHhhcc-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 048718 587 RIIGFVPQDDIVHGNLTVEENLWFSARCRL-----SADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKR 661 (1118)
Q Consensus 587 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~-----~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQR 661 (1118)
+.++|++|++.+++.+||+||+.++..... .......+...++.++++.+||.+..++.+.+ ||||||||
T Consensus 79 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qr 153 (243)
T TIGR02315 79 RRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQ-----LSGGQQQR 153 (243)
T ss_pred hheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCccc-----CCHHHHHH
Confidence 789999999999999999999987532100 00111123345688899999998877877765 99999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 662 VNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 662 VsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
|+||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.+++|++++|.+ |++++.|+++
T Consensus 154 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~-~~~~~d~v~~l~~-G~i~~~~~~~ 231 (243)
T TIGR02315 154 VAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDL-AKKYADRIVGLKA-GEIVFDGAPS 231 (243)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCeEEEEEC-CEEEecCCHH
Confidence 99999999999999999999999999999999999998764 8999999999875 4578999999976 6899999887
Q ss_pred hH
Q 048718 741 KV 742 (1118)
Q Consensus 741 ~l 742 (1118)
++
T Consensus 232 ~~ 233 (243)
T TIGR02315 232 EL 233 (243)
T ss_pred Hh
Confidence 65
No 71
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.2e-41 Score=363.23 Aligned_cols=217 Identities=28% Similarity=0.468 Sum_probs=187.0
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcCeE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKRII 589 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~I 589 (1118)
++++||+++|.+. +.+|+|+|++|++||+++|+|||||||||||++|+|+++ +++|+|.++|.++.. ..+++.+
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i 77 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIREQDPVELRRKI 77 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCcCChHHhhcce
Confidence 3688999999531 579999999999999999999999999999999999997 689999999987532 2456789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCccCCCCCHHHHHHHHHHHH
Q 048718 590 GFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH--IRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 590 gyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~--~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
+|++|++.+++.+||+||+.++.... .....+..+.+.++++.+||.+ ..++.+.+ |||||||||+||||
T Consensus 78 ~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~-----LS~G~~qrv~lara 149 (242)
T cd03295 78 GYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYPHE-----LSGGQQQRVGVARA 149 (242)
T ss_pred EEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcChhh-----CCHHHHHHHHHHHH
Confidence 99999999999999999999875432 2233444556889999999985 66776655 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 668 MVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 668 Ll~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.+.+|++++|.+ |++++.|+++++
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~-~~~~~d~i~~l~~-G~i~~~~~~~~~ 223 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDE-AFRLADRIAIMKN-GEIVQVGTPDEI 223 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH-HHHhCCEEEEEEC-CEEEEecCHHHH
Confidence 99999999999999999999999999999999864 8999999999875 4578999999976 689999987765
No 72
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=9.9e-41 Score=368.34 Aligned_cols=219 Identities=24% Similarity=0.427 Sum_probs=189.0
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh------hh
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI------QS 584 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------~~ 584 (1118)
..|+++||++.|. ++.+|+||||+|++||+++|+|||||||||||++|+|+++ |++|+|.++|.++.. ..
T Consensus 6 ~~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~ 81 (269)
T PRK11831 6 NLVDMRGVSFTRG--NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENIPAMSRSRLYT 81 (269)
T ss_pred ceEEEeCeEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccChhhHHH
Confidence 3589999999994 4679999999999999999999999999999999999997 689999999987532 12
Q ss_pred hcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 048718 585 YKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNV 664 (1118)
Q Consensus 585 ~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsI 664 (1118)
+++.++|++|++.+++.+||.||+.+...... ..........+.++++.+||.+..++.+++ |||||||||+|
T Consensus 82 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qrv~l 154 (269)
T PRK11831 82 VRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMPSE-----LSGGMARRAAL 154 (269)
T ss_pred HhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHHHH
Confidence 45679999999999999999999998653221 123333445678899999999888887766 99999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 665 GLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 665 ArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
|+||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++. +.+.+|++++|.+ |++++.|+++++
T Consensus 155 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~-~~~~~d~v~~l~~-G~i~~~g~~~~~ 231 (269)
T PRK11831 155 ARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPE-VLSIADHAYIVAD-KKIVAHGSAQAL 231 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH-HHHhhCEEEEEEC-CEEEEeCCHHHH
Confidence 99999999999999999999999999999999999765 8999999999875 5678999999975 689999998765
No 73
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=4.1e-41 Score=356.69 Aligned_cols=207 Identities=29% Similarity=0.407 Sum_probs=180.6
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-hhhcCeEEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-QSYKRIIGF 591 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Igy 591 (1118)
++++||++.|. ++++|+|+||++++||+++|+|||||||||||++|+|+.+ +++|+|.++|+++.. ..+++.++|
T Consensus 1 l~~~~l~~~~~--~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYG--KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQKNIEALRRIGA 76 (208)
T ss_pred CEEEEEEEEEC--CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccchHHHHhhEEE
Confidence 46899999994 4679999999999999999999999999999999999997 689999999986532 234667999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 048718 592 VPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVME 671 (1118)
Q Consensus 592 V~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~ 671 (1118)
++|++.+++.+||+||+.+....+ ... ..+++++++.+||.+..++.+++ |||||||||+||+||+.+
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLL---GIR----KKRIDEVLDVVGLKDSAKKKVKG-----FSLGMKQRLGIALALLGN 144 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhc---CCc----HHHHHHHHHHcCCHHHHhhhHhh-----CCHHHHHHHHHHHHHhcC
Confidence 999999999999999999876432 111 23578899999999888887765 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEec
Q 048718 672 PSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHG 737 (1118)
Q Consensus 672 P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G 737 (1118)
|++|||||||+|||+.++..+.+.|++++++|+|+|++||+++. +.+.+|++++|.+ |++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~-~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSE-IQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH-HHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999988778999999999875 4578999999976 6887764
No 74
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-40 Score=370.28 Aligned_cols=219 Identities=23% Similarity=0.399 Sum_probs=190.0
Q ss_pred EEEEEeEEEEEcCC-cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcC
Q 048718 512 EVAFKDLTITLKGK-NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKR 587 (1118)
Q Consensus 512 ~l~~knLs~~~~~~-~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~ 587 (1118)
.++++||++.|.+. .+.+|+|+|++|++||+++|+||||||||||+++|+|+++ |.+|+|.++|.++.. ..+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~ 81 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLLTEENVWDIRH 81 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECCcCcHHHHHh
Confidence 47899999999532 2469999999999999999999999999999999999998 689999999988642 34567
Q ss_pred eEEEEcCCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 048718 588 IIGFVPQDDI-VHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGL 666 (1118)
Q Consensus 588 ~IgyV~Qd~~-l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIAr 666 (1118)
.+|||+|++. +++.+||+|||.|+.... +....+..++++++++.+||.+..++.+++ |||||||||+||+
T Consensus 82 ~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----LSgGq~qrv~lAr 153 (279)
T PRK13650 82 KIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREPAR-----LSGGQKQRVAIAG 153 (279)
T ss_pred hceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCccc-----CCHHHHHHHHHHH
Confidence 8999999973 667789999999875432 234455556789999999999888888765 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 667 EMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 667 ALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
||+.+|+||||||||+|||+.++..+++.|++++++ |+|||++||+++.. ..+|++++|.+ |+++..|+++++.
T Consensus 154 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~--~~~dri~~l~~-G~i~~~g~~~~~~ 228 (279)
T PRK13650 154 AVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV--ALSDRVLVMKN-GQVESTSTPRELF 228 (279)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH--HhCCEEEEEEC-CEEEEECCHHHHH
Confidence 999999999999999999999999999999999865 99999999998753 47999999976 6999999988763
No 75
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=9e-41 Score=379.34 Aligned_cols=223 Identities=26% Similarity=0.352 Sum_probs=191.3
Q ss_pred eEEEEEeEEEEEcCC-----------cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEe
Q 048718 511 IEVAFKDLTITLKGK-----------NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKV 579 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~-----------~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~ 579 (1118)
..|+++||++.|..+ ..++|+||||+|++||+++|+|+||||||||+++|+|+++ +++|+|.++|++
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~ 84 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKD 84 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEE
Confidence 458999999999521 2579999999999999999999999999999999999998 689999999988
Q ss_pred cCh------hhhcCeEEEEcCCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcc
Q 048718 580 ASI------QSYKRIIGFVPQDD--IVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-HIRDSLVGTVE 650 (1118)
Q Consensus 580 ~~~------~~~r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-~~~dt~vg~~~ 650 (1118)
+.. ..+++.|+||+|++ .++|.+||.|||.+...... ....+.+.++++.++++.+||. +..++++++
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~-- 161 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRYPHE-- 161 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHhcCCccc--
Confidence 632 13567899999997 58889999999998765321 1234555666788999999994 466777655
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEec
Q 048718 651 KRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAK 729 (1118)
Q Consensus 651 ~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~ 729 (1118)
|||||||||+|||||+.+|+|||+||||+|||+.++.++++.|+++.++ |.|+|+||||++. +.+++|++++|.+
T Consensus 162 ---LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~-~~~~~dri~vl~~ 237 (331)
T PRK15079 162 ---FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAV-VKHISDRVLVMYL 237 (331)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999865 9999999999975 4578999999976
Q ss_pred CcEEEEecChhhHH
Q 048718 730 GGVIVYHGPVKKVE 743 (1118)
Q Consensus 730 GG~iv~~G~~~~l~ 743 (1118)
|++++.|+.+++.
T Consensus 238 -G~ive~g~~~~i~ 250 (331)
T PRK15079 238 -GHAVELGTYDEVY 250 (331)
T ss_pred -CEEEEEcCHHHHH
Confidence 6999999987763
No 76
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1.3e-40 Score=357.62 Aligned_cols=219 Identities=38% Similarity=0.626 Sum_probs=185.2
Q ss_pred EEEEeEEEEEcCC--cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CCceeEEEECCEecChhhhcCeE
Q 048718 513 VAFKDLTITLKGK--NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPG-CIMSGTILVNGKVASIQSYKRII 589 (1118)
Q Consensus 513 l~~knLs~~~~~~--~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~-~~~sG~I~inG~~~~~~~~r~~I 589 (1118)
+.|+|+++.+++. .+++|+|+||+|++||+++|+||||||||||+|+|+|++++ .+++|+|.++|.++....+++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i 83 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCV 83 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccE
Confidence 5689999999654 36899999999999999999999999999999999999861 13799999999887554567889
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHH-HHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 048718 590 GFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVER-VIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEM 668 (1118)
Q Consensus 590 gyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~-lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArAL 668 (1118)
+|++|++.+++.+||+||+.|+.................+++ .++.+++.+..++.+++ |||||||||+|||+|
T Consensus 84 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~laral 158 (226)
T cd03234 84 AYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKG-----ISGGERRRVSIAVQL 158 (226)
T ss_pred EEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccC-----cCHHHHHHHHHHHHH
Confidence 999999999999999999998765432221222222334555 89999998877777665 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEec
Q 048718 669 VMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHG 737 (1118)
Q Consensus 669 l~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G 737 (1118)
+.+|++|||||||+|||+.++..+.+.|+++.++|.|+|+++|++...+.+.+|++++|.+ |++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999998877899999999985456789999999976 6888765
No 77
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1e-40 Score=354.50 Aligned_cols=207 Identities=29% Similarity=0.421 Sum_probs=179.1
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh------hhhc
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI------QSYK 586 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------~~~r 586 (1118)
++++||++.|++ .+++|+|+|+++++||+++|+|||||||||||++|+|+++ +++|+|.++|.++.. ..++
T Consensus 1 l~~~~l~~~~~~-~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~ 77 (214)
T cd03292 1 IEFINVTKTYPN-GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSDLRGRAIPYLR 77 (214)
T ss_pred CEEEEEEEEeCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHHHHHH
Confidence 368899999953 2579999999999999999999999999999999999987 689999999987532 1356
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 048718 587 RIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGL 666 (1118)
Q Consensus 587 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIAr 666 (1118)
+.++|++|++.+++.+||+||+.+....+ .....+..+.++++++.+||.+..++.+++ |||||||||+|||
T Consensus 78 ~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~lar 149 (214)
T cd03292 78 RKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRALPAE-----LSGGEQQRVAIAR 149 (214)
T ss_pred HheEEEecCchhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChhh-----cCHHHHHHHHHHH
Confidence 78999999999999999999999876432 123334445688999999998888877765 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcE
Q 048718 667 EMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGV 732 (1118)
Q Consensus 667 ALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~ 732 (1118)
||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +.+++|++++|.+ |+
T Consensus 150 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~-~~~~~d~i~~l~~-G~ 213 (214)
T cd03292 150 AIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKEL-VDTTRHRVIALER-GK 213 (214)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEeC-Cc
Confidence 9999999999999999999999999999999987779999999999875 4568999999976 44
No 78
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-40 Score=374.37 Aligned_cols=230 Identities=22% Similarity=0.367 Sum_probs=192.0
Q ss_pred eEEEEEeEEEEEcCC---cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-----
Q 048718 511 IEVAFKDLTITLKGK---NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI----- 582 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~---~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----- 582 (1118)
..|+++||++.|..+ .+.+|+|||++|++||+++|+|+||||||||+++|+|+++ +.+|+|.++|.++..
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEcccccccc
Confidence 458999999999632 2469999999999999999999999999999999999998 689999999976521
Q ss_pred --------------hhhcCeEEEEcCCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-cccccc
Q 048718 583 --------------QSYKRIIGFVPQDD--IVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-HIRDSL 645 (1118)
Q Consensus 583 --------------~~~r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-~~~dt~ 645 (1118)
..+++.||||+|++ .+++ .||+||+.|+.... .....+...+++++++.+||. +..++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~ 173 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYLERS 173 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHhcCC
Confidence 24577899999987 4665 59999999875421 234444556788999999996 566766
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEE
Q 048718 646 VGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLI 725 (1118)
Q Consensus 646 vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vi 725 (1118)
+.+ |||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++.+|.|||++||+++. +.+.+|+++
T Consensus 174 ~~~-----LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~-~~~~adri~ 247 (320)
T PRK13631 174 PFG-----LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEH-VLEVADEVI 247 (320)
T ss_pred ccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEE
Confidence 654 99999999999999999999999999999999999999999999988779999999999875 457899999
Q ss_pred EEecCcEEEEecChhhHH---HHHHhcCCCC
Q 048718 726 LLAKGGVIVYHGPVKKVE---EYFASLGITV 753 (1118)
Q Consensus 726 vL~~GG~iv~~G~~~~l~---~yf~~lG~~~ 753 (1118)
+|.+ |++++.|+++++. ..+...|+..
T Consensus 248 vl~~-G~i~~~g~~~~~~~~~~~~~~~~~~~ 277 (320)
T PRK13631 248 VMDK-GKILKTGTPYEIFTDQHIINSTSIQV 277 (320)
T ss_pred EEEC-CEEEEeCCHHHHhcCHHHHHHcCCCC
Confidence 9976 6999999998763 2334445443
No 79
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-40 Score=370.32 Aligned_cols=219 Identities=24% Similarity=0.406 Sum_probs=187.5
Q ss_pred EEEEEeEEEEEcCC---cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh------
Q 048718 512 EVAFKDLTITLKGK---NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI------ 582 (1118)
Q Consensus 512 ~l~~knLs~~~~~~---~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------ 582 (1118)
.++++||++.|..+ .+++|+||||+|++||+++|+||||||||||+++|+|+++ +++|+|.++|.++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i~~~~~~~~ 79 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITITHKTKDKY 79 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccccch
Confidence 47899999999532 1469999999999999999999999999999999999998 689999999987632
Q ss_pred -hhhcCeEEEEcCCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHH
Q 048718 583 -QSYKRIIGFVPQDD--IVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-HIRDSLVGTVEKRGISGGQ 658 (1118)
Q Consensus 583 -~~~r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-~~~dt~vg~~~~rgLSGGE 658 (1118)
..+++.||||||++ .+++ .||+|||.|+.... .....+...+++++++.+||. +..++.+.+ |||||
T Consensus 80 ~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~-----LSgGq 150 (286)
T PRK13646 80 IRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQ-----MSGGQ 150 (286)
T ss_pred HHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCccc-----CCHHH
Confidence 24677899999986 4555 59999999875432 234445556789999999996 667777655 99999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEec
Q 048718 659 RKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHG 737 (1118)
Q Consensus 659 RQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G 737 (1118)
||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ .|+|||++||+++. +.+++|++++|.+ |++++.|
T Consensus 151 ~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~-~~~~~dri~~l~~-G~i~~~g 228 (286)
T PRK13646 151 MRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNE-VARYADEVIVMKE-GSIVSQT 228 (286)
T ss_pred HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEEEEEC-CEEEEEC
Confidence 9999999999999999999999999999999999999999975 49999999999875 4578999999976 6899999
Q ss_pred ChhhHH
Q 048718 738 PVKKVE 743 (1118)
Q Consensus 738 ~~~~l~ 743 (1118)
+++++.
T Consensus 229 ~~~~~~ 234 (286)
T PRK13646 229 SPKELF 234 (286)
T ss_pred CHHHHH
Confidence 987753
No 80
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1e-40 Score=354.84 Aligned_cols=206 Identities=29% Similarity=0.429 Sum_probs=179.0
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh------hhhc
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI------QSYK 586 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------~~~r 586 (1118)
++++||++.|+ +++.+|+|+||+|++||+++|+||||||||||+++|+|+++ +.+|+|.++|+++.. ..++
T Consensus 2 l~~~~l~~~~~-~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (214)
T TIGR02673 2 IEFHNVSKAYP-GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVNRLRGRQLPLLR 78 (214)
T ss_pred EEEEeeeEEeC-CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHHHHHHHH
Confidence 67899999994 23579999999999999999999999999999999999987 689999999987642 1346
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 048718 587 RIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGL 666 (1118)
Q Consensus 587 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIAr 666 (1118)
+.++|++|++.+++.+||.||+.++...+ ..........++++++.+||.+..++.+.+ |||||||||+||+
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~ 150 (214)
T TIGR02673 79 RRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFPEQ-----LSGGEQQRVAIAR 150 (214)
T ss_pred hheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHHHHHH
Confidence 78999999999999999999999875432 122333445688999999998877777765 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecC
Q 048718 667 EMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKG 730 (1118)
Q Consensus 667 ALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~G 730 (1118)
||+.+|++|||||||+|||+.++..+.+.|+++.++|+|||++||+++. +.+.+|++++|.+|
T Consensus 151 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~-~~~~~d~i~~l~~G 213 (214)
T TIGR02673 151 AIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSL-VDRVAHRVIILDDG 213 (214)
T ss_pred HHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCEEEEecCC
Confidence 9999999999999999999999999999999987779999999999875 55789999999753
No 81
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=8.4e-41 Score=383.08 Aligned_cols=206 Identities=22% Similarity=0.357 Sum_probs=184.0
Q ss_pred cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhh----cCeEEEEcCCCCC
Q 048718 526 NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSY----KRIIGFVPQDDIV 598 (1118)
Q Consensus 526 ~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~----r~~IgyV~Qd~~l 598 (1118)
.+.+|+|+||+|++||+++|+|||||||||||++|+|+++ |++|+|.++|+++.. ..+ ++.|+||||++.+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 4679999999999999999999999999999999999998 689999999988642 223 6789999999999
Q ss_pred CCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 048718 599 HGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILD 678 (1118)
Q Consensus 599 ~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLD 678 (1118)
|+++||+||+.|+.... ...+.+..+++.++++.+||.+..++++++ |||||||||+|||||+.+|+|||||
T Consensus 83 ~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~-----LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 83 FPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYPDE-----LSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999987542 344555667889999999999888888876 9999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 679 EPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 679 EPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
|||++||+.++..+.+.|+++.++ |+|||++||++++. .+++|++++|.+ |++++.|+++++.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea-~~~~drI~vl~~-G~iv~~g~~~ei~ 218 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEA-IRIGDRIVIMKA-GEIVQVGTPDEIL 218 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEEEEeC-CEEEeeCCHHHHH
Confidence 999999999999999999999754 99999999999864 588999999975 6999999988763
No 82
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-40 Score=369.42 Aligned_cols=219 Identities=22% Similarity=0.361 Sum_probs=187.9
Q ss_pred EEEEEeEEEEEcCC---cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh------
Q 048718 512 EVAFKDLTITLKGK---NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI------ 582 (1118)
Q Consensus 512 ~l~~knLs~~~~~~---~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------ 582 (1118)
.++++||++.|.+. .+.+|+|+|++|++||+++|+|||||||||||++|+|+++ |++|+|.++|+++..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~ 79 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHITPETGNKN 79 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccccch
Confidence 47899999999532 2469999999999999999999999999999999999998 689999999987531
Q ss_pred -hhhcCeEEEEcCCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHH
Q 048718 583 -QSYKRIIGFVPQDD--IVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-HIRDSLVGTVEKRGISGGQ 658 (1118)
Q Consensus 583 -~~~r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-~~~dt~vg~~~~rgLSGGE 658 (1118)
...++.|+|++|++ .++ .+||.||+.|+.... .....+...+++++++.+||. +..++.+++ |||||
T Consensus 80 ~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~-----LSgGq 150 (287)
T PRK13641 80 LKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSPFE-----LSGGQ 150 (287)
T ss_pred HHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCccc-----CCHHH
Confidence 23566899999997 345 579999999875432 233444556789999999997 677887766 99999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecC
Q 048718 659 RKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGP 738 (1118)
Q Consensus 659 RQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~ 738 (1118)
||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +.+.+|++++|.+ |++++.|+
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~-~~~~~d~v~~l~~-G~i~~~g~ 228 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDD-VAEYADDVLVLEH-GKLIKHAS 228 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEeCC
Confidence 999999999999999999999999999999999999999997779999999999875 4678999999976 68999999
Q ss_pred hhhHH
Q 048718 739 VKKVE 743 (1118)
Q Consensus 739 ~~~l~ 743 (1118)
++++.
T Consensus 229 ~~~~~ 233 (287)
T PRK13641 229 PKEIF 233 (287)
T ss_pred HHHHh
Confidence 88763
No 83
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=2.5e-40 Score=360.02 Aligned_cols=215 Identities=24% Similarity=0.390 Sum_probs=184.7
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc-----eeEEEECCEecCh-----
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIM-----SGTILVNGKVASI----- 582 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~-----sG~I~inG~~~~~----- 582 (1118)
++++||++.|. ++.+|+|+||+|++||+++|+|+|||||||||++|+|+++ |. +|+|.++|+++..
T Consensus 2 l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~~~~~~G~i~~~g~~~~~~~~~~ 77 (247)
T TIGR00972 2 IEIENLNLFYG--EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND--LVPGVRIEGKVLFDGQDIYDKKIDV 77 (247)
T ss_pred EEEEEEEEEEC--CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCcCCCCceEEEECCEEccccccch
Confidence 67899999994 3579999999999999999999999999999999999997 45 9999999987642
Q ss_pred hhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccCCCCCHHH
Q 048718 583 QSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ----HIRDSLVGTVEKRGISGGQ 658 (1118)
Q Consensus 583 ~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~----~~~dt~vg~~~~rgLSGGE 658 (1118)
...++.++|+||++.+++ +||+||+.+....+ ......+..+.++++++.+||. +..++.+++ |||||
T Consensus 78 ~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~-----LSgG~ 149 (247)
T TIGR00972 78 VELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLH--GIKDKKELDEIVEESLKKAALWDEVKDRLHDSALG-----LSGGQ 149 (247)
T ss_pred HHHHhheEEEecCcccCC-CCHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCccc-----CCHHH
Confidence 235678999999999988 99999999876432 1123344455688999999997 666666655 99999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecC
Q 048718 659 RKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGP 738 (1118)
Q Consensus 659 RQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~ 738 (1118)
||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++. +.+.+|++++|.+ |++++.|+
T Consensus 150 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~-~~~~~d~i~~l~~-G~i~~~~~ 226 (247)
T TIGR00972 150 QQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQQ-AARISDRTAFFYD-GELVEYGP 226 (247)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHHH-HHHhCCEEEEEEC-CEEEEeCC
Confidence 9999999999999999999999999999999999999999876 4899999999875 4578999999976 68999999
Q ss_pred hhhH
Q 048718 739 VKKV 742 (1118)
Q Consensus 739 ~~~l 742 (1118)
++++
T Consensus 227 ~~~~ 230 (247)
T TIGR00972 227 TEQI 230 (247)
T ss_pred HHHH
Confidence 8765
No 84
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-40 Score=359.87 Aligned_cols=218 Identities=26% Similarity=0.487 Sum_probs=188.3
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh----hhhcC
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI----QSYKR 587 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r~ 587 (1118)
.++++||++.|+ ++.+|+|+||+|++||+++|+|||||||||||++|+|+++ +++|+|.++|.++.. ...++
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~ 78 (241)
T PRK10895 3 TLTAKNLAKAYK--GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDISLLPLHARARR 78 (241)
T ss_pred eEEEeCcEEEeC--CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHHh
Confidence 478999999994 4679999999999999999999999999999999999997 689999999987632 12456
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
.++|++|++.+++.+||.||+.+..... ......+.+..++++++.+||.+..++.+++ |||||||||+||+|
T Consensus 79 ~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~lara 151 (241)
T PRK10895 79 GIGYLPQEASIFRRLSVYDNLMAVLQIR--DDLSAEQREDRANELMEEFHIEHLRDSMGQS-----LSGGERRRVEIARA 151 (241)
T ss_pred CeEEeccCCcccccCcHHHHHhhhhhcc--cccCHHHHHHHHHHHHHHcCCHHHhhcchhh-----CCHHHHHHHHHHHH
Confidence 7999999999999999999998865322 1122334455688999999998877777665 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 668 MVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 668 Ll~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
|+.+|++|||||||+|||+.++..+.+.|+.++++|.|||+++|+++. +.+.+|++++|.+ |++++.|+++++
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~-~~~~~d~v~~l~~-G~i~~~~~~~~~ 224 (241)
T PRK10895 152 LAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRE-TLAVCERAYIVSQ-GHLIAHGTPTEI 224 (241)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHH-HHHhcCEEEEEeC-CeEEeeCCHHHH
Confidence 999999999999999999999999999999988779999999999864 5688999999976 689999998765
No 85
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-40 Score=359.01 Aligned_cols=218 Identities=26% Similarity=0.394 Sum_probs=186.8
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---------h
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---------I 582 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---------~ 582 (1118)
.++++||++.|. ++.+|+|+|++|++||+++|+|||||||||||++|+|+.+ +++|+|.++|.++. .
T Consensus 2 ~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~ 77 (242)
T PRK11124 2 SIQLNGINCFYG--AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFDFSKTPSDKAI 77 (242)
T ss_pred EEEEEeeEEEEC--CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecccccccchhhH
Confidence 478999999994 3679999999999999999999999999999999999997 68999999998752 1
Q ss_pred hhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 048718 583 QSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRV 662 (1118)
Q Consensus 583 ~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRV 662 (1118)
..+++.|+|++|++.+++.+||.||+.+..... ......+....+.++++.+||.+..++.+.+ |||||||||
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrv 150 (242)
T PRK11124 78 RELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRV--LGLSKDQALARAEKLLERLRLKPYADRFPLH-----LSGGQQQRV 150 (242)
T ss_pred HHHHhheEEEecCccccCCCcHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHH
Confidence 234678999999999999999999997532211 1122333445688999999998888887765 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 663 NVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 663 sIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
+|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|+|+++|+++. +.+.+|++++|.+ |++++.|+.+++
T Consensus 151 ~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~-~~~~~d~i~~l~~-g~i~~~~~~~~~ 228 (242)
T PRK11124 151 AIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEV-ARKTASRVVYMEN-GHIVEQGDASCF 228 (242)
T ss_pred HHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCEEEEEEC-CEEEEeCCHHHh
Confidence 99999999999999999999999999999999999988779999999999875 4578999999976 689999987653
No 86
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-40 Score=367.08 Aligned_cols=219 Identities=25% Similarity=0.402 Sum_probs=190.0
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcCe
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKRI 588 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~ 588 (1118)
.++++||++.|....+.+|+|+||+|++||+++|+|||||||||||++|+|+++ |++|+|.++|+++.. ..+++.
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVLSEETVWDVRRQ 82 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECCcCcHHHHhhh
Confidence 488999999995334579999999999999999999999999999999999998 689999999988642 245678
Q ss_pred EEEEcCCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 048718 589 IGFVPQDDI-VHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 589 IgyV~Qd~~-l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
|||++|++. +++.+||.|||.++.... .....+..++++++++.+||.+..++.+++ |||||||||+||+|
T Consensus 83 i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----LS~G~~qrv~lara 154 (279)
T PRK13635 83 VGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREPHR-----LSGGQKQRVAIAGV 154 (279)
T ss_pred eEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCccc-----CCHHHHHHHHHHHH
Confidence 999999973 666789999999875432 233444456789999999999888888766 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 668 MVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 668 Ll~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
|+.+|+||||||||+|||+.++..+++.|++++++ |.|||++||+++.. ..+|++++|.+ |++++.|+.+++.
T Consensus 155 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~--~~~d~i~~l~~-G~i~~~g~~~~~~ 228 (279)
T PRK13635 155 LALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEA--AQADRVIVMNK-GEILEEGTPEEIF 228 (279)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHH--HcCCEEEEEEC-CEEEEECCHHHHh
Confidence 99999999999999999999999999999999875 89999999998864 35999999976 6899999988764
No 87
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=7.2e-41 Score=354.36 Aligned_cols=203 Identities=30% Similarity=0.463 Sum_probs=174.3
Q ss_pred EEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcC
Q 048718 515 FKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQ 594 (1118)
Q Consensus 515 ~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Q 594 (1118)
++||++.|+++ +.+|+|+||+|++||+++|+|||||||||||++|+|+++ |++|+|.++|.++.....++.++|++|
T Consensus 2 ~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q 78 (205)
T cd03226 2 IENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQ 78 (205)
T ss_pred cccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEec
Confidence 57899999431 579999999999999999999999999999999999998 689999999987644445678999999
Q ss_pred CCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCC
Q 048718 595 DDI-VHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPS 673 (1118)
Q Consensus 595 d~~-l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~ 673 (1118)
++. .+..+||+||+.++.... . . ...+++++++.+||.+..++.+.+ |||||||||+|||||+.+|+
T Consensus 79 ~~~~~~~~~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~ 146 (205)
T cd03226 79 DVDYQLFTDSVREELLLGLKEL---D--A--GNEQAETVLKDLDLYALKERHPLS-----LSGGQKQRLAIAAALLSGKD 146 (205)
T ss_pred ChhhhhhhccHHHHHhhhhhhc---C--c--cHHHHHHHHHHcCCchhcCCCchh-----CCHHHHHHHHHHHHHHhCCC
Confidence 974 234679999998865422 1 1 123578999999999888887765 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEE
Q 048718 674 LLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIV 734 (1118)
Q Consensus 674 lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv 734 (1118)
+|||||||+|||+.++..+.+.|++++++|.|||++||+++. +.+++|++++|.+ |+++
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~-~~~~~d~i~~l~~-G~iv 205 (205)
T cd03226 147 LLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEF-LAKVCDRVLLLAN-GAIV 205 (205)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEC
Confidence 999999999999999999999999998779999999999875 4578999999976 5653
No 88
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.8e-40 Score=354.65 Aligned_cols=209 Identities=24% Similarity=0.407 Sum_probs=177.7
Q ss_pred EEEEeEEEEEcCC--cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---h---h
Q 048718 513 VAFKDLTITLKGK--NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---Q---S 584 (1118)
Q Consensus 513 l~~knLs~~~~~~--~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~---~ 584 (1118)
++++||++.|.++ .+++|+|+||+|++||+++|+|||||||||||++|+|+++ +.+|+|.++|.++.. . .
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~ 79 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLSKLSSNERAK 79 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcCHhHHHH
Confidence 6789999999532 2579999999999999999999999999999999999998 689999999987632 1 1
Q ss_pred hc-CeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 048718 585 YK-RIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVN 663 (1118)
Q Consensus 585 ~r-~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVs 663 (1118)
++ +.++|++|++.+++.+||+||+.+....+ .....+..+.+.++++.+||.+..++.++. |||||||||+
T Consensus 80 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~ 151 (221)
T TIGR02211 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHRPSE-----LSGGERQRVA 151 (221)
T ss_pred HHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHHH
Confidence 23 57999999999999999999999875432 122333345678999999998888887765 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEE
Q 048718 664 VGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIV 734 (1118)
Q Consensus 664 IArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv 734 (1118)
|||+|+.+|+||||||||+|||+.++..+.+.|++++++ |.|||++||+++. + +.+|++++|.+ |+++
T Consensus 152 laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~-~-~~~d~v~~l~~-G~i~ 220 (221)
T TIGR02211 152 IARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLEL-A-KKLDRVLEMKD-GQLF 220 (221)
T ss_pred HHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-hhcCEEEEEeC-CEec
Confidence 999999999999999999999999999999999999864 8999999999875 3 45799999976 5664
No 89
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=3.2e-40 Score=361.45 Aligned_cols=218 Identities=27% Similarity=0.405 Sum_probs=187.2
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---------
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI--------- 582 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--------- 582 (1118)
.++++||++.|+ ++++|+|+||+|++||+++|+|+|||||||||++|+|+++ +++|+|.++|.++..
T Consensus 5 ~l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 5 KLNVIDLHKRYG--EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred cEEEeeeEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccccccccccc
Confidence 478999999994 4679999999999999999999999999999999999997 689999999986531
Q ss_pred -------hhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCccCCCC
Q 048718 583 -------QSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIR-DSLVGTVEKRGI 654 (1118)
Q Consensus 583 -------~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~-dt~vg~~~~rgL 654 (1118)
..+++.++|++|++.+++.+||+||+.++..... .....+.+.++.++++.+||.+.. ++.+.+ |
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~-----L 153 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQGKYPVH-----L 153 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhCCccc-----C
Confidence 2346789999999999999999999987542111 123344456788999999998753 665554 9
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEE
Q 048718 655 SGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIV 734 (1118)
Q Consensus 655 SGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv 734 (1118)
||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++.|+|||++||+++. +.+.+|++++|.+ |+++
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~-~~~~~d~i~~l~~-G~i~ 231 (257)
T PRK10619 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF-ARHVSSHVIFLHQ-GKIE 231 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCEEEEEEC-CEEE
Confidence 9999999999999999999999999999999999999999999998779999999999875 5568999999976 6899
Q ss_pred EecChhhH
Q 048718 735 YHGPVKKV 742 (1118)
Q Consensus 735 ~~G~~~~l 742 (1118)
+.|+.+++
T Consensus 232 ~~~~~~~~ 239 (257)
T PRK10619 232 EEGAPEQL 239 (257)
T ss_pred EeCCHHHh
Confidence 99988765
No 90
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=3.5e-40 Score=356.60 Aligned_cols=216 Identities=27% Similarity=0.447 Sum_probs=186.2
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh--hhhcCeEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI--QSYKRIIG 590 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~Ig 590 (1118)
++++|++++|+ ++.+|+|+|++|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ...++.++
T Consensus 2 l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~~~~~~~~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYG--ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLRRAPRAALARLG 77 (236)
T ss_pred EEEEeeEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcccCChhhhhhEE
Confidence 67899999994 4679999999999999999999999999999999999997 689999999987532 12335799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
|++|++.+++.+||+||+.+....+ ..........++++++.+||.+..++.+++ |||||||||+|||||+.
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrl~laral~~ 149 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKVRE-----LNGGHRRRVEIARALLH 149 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCChhh-----CCHHHHHHHHHHHHHhc
Confidence 9999998888999999998865432 223333445688999999999888887765 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
+|+||||||||+|||+.++..+.+.|+++++ +|.|||++||+++.. ..+|++++|.+ |++++.|+++++.
T Consensus 150 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~--~~~d~i~~l~~-G~i~~~~~~~~~~ 220 (236)
T TIGR03864 150 RPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEI--EADDRLVVLHR-GRVLADGAAAELR 220 (236)
T ss_pred CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhH--hhCCEEEEEeC-CeEEEeCCHHHHH
Confidence 9999999999999999999999999999985 589999999999864 35999999976 6899999887654
No 91
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.4e-38 Score=415.67 Aligned_cols=223 Identities=28% Similarity=0.447 Sum_probs=198.2
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh--hhhcCe
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI--QSYKRI 588 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~ 588 (1118)
..|+++||++.|+++++.+|+|+|+++.+||+++|+||||||||||||+|+|+.+ |++|+|.++|+++.. ...|+.
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~dI~~~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKDIETNLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEECcchHHHHhhc
Confidence 4689999999995445789999999999999999999999999999999999998 689999999988642 345778
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 048718 589 IGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEM 668 (1118)
Q Consensus 589 IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArAL 668 (1118)
+||+||++.+++.+||+|||.|.++.+ +.+..+.+++++++++.+||.+..++.+++ |||||||||+||+||
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lk---g~~~~~~~~~v~~lL~~vgL~~~~~~~~~~-----LSGGqKQRLsLArAL 1076 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNEEAQD-----LSGGMQRKLSVAIAF 1076 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHH
Confidence 999999999999999999999987654 233344456789999999999988988876 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHHHHH
Q 048718 669 VMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVEEYF 746 (1118)
Q Consensus 669 l~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~~yf 746 (1118)
+.+|+||||||||+|||+.+++.+++.|++++ +|+|||++||++++ +..++|++++|.+ |+++..|++..+++.|
T Consensus 1077 i~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmde-a~~laDrI~iL~~-GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1077 VGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMDE-ADLLGDRIAIISQ-GRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHHH-HHHhCCEEEEEEC-CEEEEecCHHHHHHhc
Confidence 99999999999999999999999999999985 69999999999986 4578999999976 6899999999987655
No 92
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-40 Score=364.94 Aligned_cols=218 Identities=23% Similarity=0.380 Sum_probs=184.9
Q ss_pred EEEEEeEEEEEcCCc---ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh------
Q 048718 512 EVAFKDLTITLKGKN---KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI------ 582 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~---k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------ 582 (1118)
.++++||++.|.+.. +++|+|+||+|++||+++|+|||||||||||++|+|+++ |++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~ 79 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLITSTSKNKD 79 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccC
Confidence 478999999995321 469999999999999999999999999999999999997 689999999987532
Q ss_pred -hhhcCeEEEEcCCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHH
Q 048718 583 -QSYKRIIGFVPQDD--IVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-HIRDSLVGTVEKRGISGGQ 658 (1118)
Q Consensus 583 -~~~r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-~~~dt~vg~~~~rgLSGGE 658 (1118)
..+++.|+|++|++ .+++ .||+||+.+..... .....+....++++++.+||. +..++.+++ |||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgG~ 150 (280)
T PRK13649 80 IKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKNPFE-----LSGGQ 150 (280)
T ss_pred HHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCccc-----CCHHH
Confidence 23567899999996 4554 69999999875432 123334445678899999997 456776665 99999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecC
Q 048718 659 RKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGP 738 (1118)
Q Consensus 659 RQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~ 738 (1118)
||||+||+||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||+++. +.+.+|++++|.+ |++++.|+
T Consensus 151 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~-~~~~~d~i~~l~~-G~i~~~g~ 228 (280)
T PRK13649 151 MRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDD-VANYADFVYVLEK-GKLVLSGK 228 (280)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHH-HHHhCCEEEEEEC-CEEEEeCC
Confidence 999999999999999999999999999999999999999998779999999999875 4578999999976 68999999
Q ss_pred hhhH
Q 048718 739 VKKV 742 (1118)
Q Consensus 739 ~~~l 742 (1118)
++++
T Consensus 229 ~~~~ 232 (280)
T PRK13649 229 PKDI 232 (280)
T ss_pred HHHH
Confidence 8776
No 93
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.9e-42 Score=353.59 Aligned_cols=221 Identities=26% Similarity=0.465 Sum_probs=198.3
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh----hhhc
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI----QSYK 586 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r 586 (1118)
..+..+||.++| ++++++++||+++++||+++++|||||||||.+.++.|+.+ +++|.|.+||.+++. ...|
T Consensus 3 ~~L~a~~l~K~y--~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm~~RAr 78 (243)
T COG1137 3 STLVAENLAKSY--KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPMHKRAR 78 (243)
T ss_pred cEEEehhhhHhh--CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCChHHHhh
Confidence 357889999999 45789999999999999999999999999999999999998 799999999998753 2345
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 048718 587 RIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGL 666 (1118)
Q Consensus 587 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIAr 666 (1118)
..|||+||++..|..|||+|||...+..+. .+..+.+.+.+++++|+.|+|.|.++++... ||||||+||.|||
T Consensus 79 lGigYLpQE~SIFr~LtV~dNi~~vlE~~~-~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~s-----LSGGERRR~EIAR 152 (243)
T COG1137 79 LGIGYLPQEASIFRKLTVEDNIMAVLEIRE-KDLKKAERKEELDALLEEFHITHLRDSKAYS-----LSGGERRRVEIAR 152 (243)
T ss_pred cCcccccccchHhhcCcHHHHHHHHHhhhh-cchhHHHHHHHHHHHHHHhchHHHhcCcccc-----cccchHHHHHHHH
Confidence 569999999999999999999998887653 2333445666789999999999999998776 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 667 EMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 667 ALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
||+.+|+.++||||++|+||.+..+|.++++.|+..|..|+++-|+..+. ..++||..++.+ |+++.+|+++++.
T Consensus 153 aLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREt-L~i~dRaYIi~~-G~vla~G~p~ei~ 227 (243)
T COG1137 153 ALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRET-LDICDRAYIISD-GKVLAEGSPEEIV 227 (243)
T ss_pred HHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHH-HhhhheEEEEec-CeEEecCCHHHHh
Confidence 99999999999999999999999999999999999999999999999875 589999999987 6899999998864
No 94
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-40 Score=362.30 Aligned_cols=213 Identities=26% Similarity=0.412 Sum_probs=184.7
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFV 592 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV 592 (1118)
++++||++.|. ++.+|+|+||+|++||+++|+|||||||||||++|+|+++ +++|+|.++|.++.. .+..++|+
T Consensus 2 l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~--~~~~~~~v 75 (255)
T PRK11248 2 LQISHLYADYG--GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEG--PGAERGVV 75 (255)
T ss_pred EEEEEEEEEeC--CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCC--CCCcEEEE
Confidence 67899999994 3679999999999999999999999999999999999997 689999999987642 23468999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCC
Q 048718 593 PQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEP 672 (1118)
Q Consensus 593 ~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P 672 (1118)
+|++.+++.+||.||+.+....+ .....+...+++++++.+||.+..++.+.+ |||||||||+||+||+.+|
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qrl~laral~~~p 147 (255)
T PRK11248 76 FQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYIWQ-----LSGGQRQRVGIARALAANP 147 (255)
T ss_pred eCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCChhh-----CCHHHHHHHHHHHHHhcCC
Confidence 99999999999999998875432 223344455788999999998877777765 9999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEec-CcEEEEecChh
Q 048718 673 SLLILDEPTSGLDSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAK-GGVIVYHGPVK 740 (1118)
Q Consensus 673 ~lLlLDEPTsGLD~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~-GG~iv~~G~~~ 740 (1118)
++|||||||+|||+.++..+.+.|+++++ .|.|||++||+++. +.+.+|++++|.+ +|+++..++.+
T Consensus 148 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~-~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 148 QLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEE-AVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999999999864 58999999999875 5688999999974 57998877653
No 95
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-40 Score=353.20 Aligned_cols=209 Identities=32% Similarity=0.493 Sum_probs=180.6
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh--hhhcCeEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI--QSYKRIIG 590 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~Ig 590 (1118)
++++||++.|. ++++|+|+||+|++| +++|+|||||||||||++|+|+++ +++|+|.++|.++.. ..+++.++
T Consensus 1 i~~~~~~~~~~--~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYG--KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLKQPQKLRRRIG 75 (211)
T ss_pred CEEEEEEEEEC--CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCccccchHHHHhheE
Confidence 46899999994 357999999999999 999999999999999999999998 689999999976532 24567899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
|++|++.+++.+||.||+.+....+ .....+....++++++.+||.+..++.+++ |||||||||+||+||+.
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al~~ 147 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKIGS-----LSGGMRRRVGIAQALVG 147 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCchhh-----CCHHHHHHHHHHHHHhc
Confidence 9999999999999999999876432 122333445688999999998888887765 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEec
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHG 737 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G 737 (1118)
+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|+++. +.+++|++++|.+ |++++.|
T Consensus 148 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~-~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 148 DPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVED-VESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHH-HHHhCCEEEEEEC-CEEEecC
Confidence 9999999999999999999999999999875 5899999999875 4578999999976 6887754
No 96
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-40 Score=352.81 Aligned_cols=217 Identities=29% Similarity=0.460 Sum_probs=190.7
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh----hhhcC
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI----QSYKR 587 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r~ 587 (1118)
.++++||+..| ++.++|++|||++++||+++|+|+||||||||||+|+|+.+ +.+|+|.++|+++.. ...|.
T Consensus 3 mL~v~~l~~~Y--G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit~~p~~~r~r~ 78 (237)
T COG0410 3 MLEVENLSAGY--GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDITGLPPHERARL 78 (237)
T ss_pred ceeEEeEeecc--cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecCCCCHHHHHhC
Confidence 47899999999 45789999999999999999999999999999999999998 579999999998743 34577
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHc-CCCccccccccCccCCCCCHHHHHHHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESL-GLQHIRDSLVGTVEKRGISGGQRKRVNVGL 666 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~l-gL~~~~dt~vg~~~~rgLSGGERQRVsIAr 666 (1118)
.|+||||...+||.|||+|||..++..+.. +......++++.+.| .|.+.++++.|+ |||||||.++|||
T Consensus 79 Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG~-----LSGGEQQMLAiaR 149 (237)
T COG0410 79 GIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAGT-----LSGGEQQMLAIAR 149 (237)
T ss_pred CeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCcccC-----CChHHHHHHHHHH
Confidence 899999999999999999999998754321 111222277888888 477888888887 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 667 EMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 667 ALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
||+.+|++|+|||||.||-|.-..+|.+.|++++++ |.||+++-++...+ .+++|+.+||.+ |++++.|+.+++.
T Consensus 150 ALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~A-l~iaDr~yvle~-Griv~~G~~~eL~ 225 (237)
T COG0410 150 ALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFA-LEIADRGYVLEN-GRIVLSGTAAELL 225 (237)
T ss_pred HHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHH-HHhhCEEEEEeC-CEEEEecCHHHHh
Confidence 999999999999999999999999999999999965 88999999998876 589999999976 6999999998874
No 97
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-40 Score=364.69 Aligned_cols=221 Identities=21% Similarity=0.400 Sum_probs=189.9
Q ss_pred CceEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhh
Q 048718 509 PTIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSY 585 (1118)
Q Consensus 509 ~~~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~ 585 (1118)
+...++++||++.|.++++.+|+|+||+|++||+++|+|||||||||||++|+|+.+ +++|+|.++|.++.. ..+
T Consensus 4 ~~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~ 81 (271)
T PRK13632 4 KSVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITISKENLKEI 81 (271)
T ss_pred cceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEecCcCCHHHH
Confidence 345689999999995334679999999999999999999999999999999999998 689999999988642 346
Q ss_pred cCeEEEEcCCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 048718 586 KRIIGFVPQDDI-VHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNV 664 (1118)
Q Consensus 586 r~~IgyV~Qd~~-l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsI 664 (1118)
++.++|++|++. .++.+||+||+.++.... .....+....++++++.+||.+..++.+.+ |||||||||+|
T Consensus 82 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~l 153 (271)
T PRK13632 82 RKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEPQN-----LSGGQKQRVAI 153 (271)
T ss_pred hcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCccc-----CCHHHHHHHHH
Confidence 778999999974 566789999999875422 223344455688999999999888888765 99999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 665 GLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 665 ArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
||||+.+|+||||||||+|||+.++..+++.|++++++ ++|||+++|+++.. ..+|++++|.+ |++++.|+.+++
T Consensus 154 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~--~~~d~v~~l~~-G~i~~~g~~~~~ 229 (271)
T PRK13632 154 ASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEA--ILADKVIVFSE-GKLIAQGKPKEI 229 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHH--hhCCEEEEEEC-CEEEEecCHHHH
Confidence 99999999999999999999999999999999999866 59999999999764 47999999976 689999988765
No 98
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-40 Score=365.24 Aligned_cols=219 Identities=28% Similarity=0.463 Sum_probs=189.2
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC-----hhhhc
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS-----IQSYK 586 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~-----~~~~r 586 (1118)
.|+++||++.|. +++.+|+||||+|++||+++|+||||||||||+++|+|+++ +.+|+|.++|.++. ...++
T Consensus 5 ~l~~~~l~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~ 81 (283)
T PRK13636 5 ILKVEELNYNYS-DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPIDYSRKGLMKLR 81 (283)
T ss_pred eEEEEeEEEEeC-CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEECCCCcchHHHHH
Confidence 488999999995 23579999999999999999999999999999999999998 68999999998763 12466
Q ss_pred CeEEEEcCCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 048718 587 RIIGFVPQDDI-VHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVG 665 (1118)
Q Consensus 587 ~~IgyV~Qd~~-l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIA 665 (1118)
+.|||+||++. .+...||+||+.++.... ..+..+...+++++++.+||.+..++.+.+ |||||||||+||
T Consensus 82 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----LS~G~~qrl~la 153 (283)
T PRK13636 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPTHC-----LSFGQKKRVAIA 153 (283)
T ss_pred hhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCccc-----CCHHHHHHHHHH
Confidence 78999999973 234579999999875422 234444556789999999999888888766 999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 666 LEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 666 rALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
|||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.+.+|++++|.+ |++++.|+++++.
T Consensus 154 raL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~-~~~~~dri~~l~~-G~i~~~g~~~~~~ 230 (283)
T PRK13636 154 GVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDI-VPLYCDNVFVMKE-GRVILQGNPKEVF 230 (283)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEEEEEC-CEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999865 9999999999876 4568999999976 6899999998764
No 99
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=2.8e-40 Score=354.10 Aligned_cols=215 Identities=27% Similarity=0.397 Sum_probs=177.7
Q ss_pred EEEEeEEEEEcCCc--ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh------hh
Q 048718 513 VAFKDLTITLKGKN--KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI------QS 584 (1118)
Q Consensus 513 l~~knLs~~~~~~~--k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------~~ 584 (1118)
++++||++.|.+.. ..+|+|+|++|++||+++|+|||||||||||++|+|+++ +.+|+|.++|+++.. ..
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~ 79 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLLKLSRRLRKI 79 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccchhhHHH
Confidence 67899999995321 279999999999999999999999999999999999997 689999999987642 23
Q ss_pred hcCeEEEEcCCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHH
Q 048718 585 YKRIIGFVPQDD--IVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-HIRDSLVGTVEKRGISGGQRKR 661 (1118)
Q Consensus 585 ~r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-~~~dt~vg~~~~rgLSGGERQR 661 (1118)
+++.++|++|++ .+++.+||+||+.+....... ..........++++++.++|. +..++.+++ ||||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LS~G~~qr 153 (228)
T cd03257 80 RRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK-LSKKEARKEAVLLLLVGVGLPEEVLNRYPHE-----LSGGQRQR 153 (228)
T ss_pred hhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHHHHCCCChhHhhCCchh-----cCHHHHHH
Confidence 567899999998 466789999999887543211 111111122236889999995 566777665 99999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEec
Q 048718 662 VNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHG 737 (1118)
Q Consensus 662 VsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G 737 (1118)
|+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |.|||++||+++. +.+.+|++++|.+ |+++..|
T Consensus 154 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~~~~d~i~~l~~-G~i~~~g 228 (228)
T cd03257 154 VAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGV-VAKIADRVAVMYA-GKIVEEG 228 (228)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCeEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999999865 8999999999875 4568999999976 6887654
No 100
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.8e-40 Score=352.24 Aligned_cols=205 Identities=33% Similarity=0.528 Sum_probs=174.9
Q ss_pred EEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcCeEEE
Q 048718 515 FKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKRIIGF 591 (1118)
Q Consensus 515 ~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~Igy 591 (1118)
++||++.|.+..+.+|+|+||+|++||+++|+|||||||||||++|+|+++ +++|+|.++|.++.. ..+++.|+|
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceE
Confidence 678999995322679999999999999999999999999999999999997 689999999987532 345678999
Q ss_pred EcCCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 592 VPQDDI-VHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 592 V~Qd~~-l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
++|++. .++.+||+||+.++.... ..........++++++.+||.+..++++++ |||||||||+|||||+.
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~laral~~ 151 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSPFT-----LSGGQKQRVAIAGVLAM 151 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCccc-----CCHHHHHHHHHHHHHhc
Confidence 999974 356789999998865432 122333445688999999998877877765 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecC
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKG 730 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~G 730 (1118)
+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +.+++|++++|.+|
T Consensus 152 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~-~~~~~d~i~~l~~G 210 (211)
T cd03225 152 DPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDL-LLELADRVIVLEDG 210 (211)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEeCC
Confidence 999999999999999999999999999998779999999999875 45779999999764
No 101
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=2.4e-40 Score=351.46 Aligned_cols=207 Identities=28% Similarity=0.448 Sum_probs=179.1
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-----hhhcC
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-----QSYKR 587 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-----~~~r~ 587 (1118)
++++||++.|. ++.+|+++||++++||+++|+|||||||||||++|+|+++ +++|+|.++|+++.. ..+++
T Consensus 1 l~~~~l~~~~~--~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (213)
T cd03262 1 IEIKNLHKSFG--DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTDDKKNINELRQ 76 (213)
T ss_pred CEEEEEEEEEC--CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccchhHHHHHh
Confidence 46889999994 3679999999999999999999999999999999999997 689999999987631 24567
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
.++|++|++.+++.+||.||+.++.... ......+..+.++++++.+||.+..++.+.+ |||||||||+||+|
T Consensus 77 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~a 149 (213)
T cd03262 77 KVGMVFQQFNLFPHLTVLENITLAPIKV--KGMSKAEAEERALELLEKVGLADKADAYPAQ-----LSGGQQQRVAIARA 149 (213)
T ss_pred cceEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCCHhHhhhCccc-----cCHHHHHHHHHHHH
Confidence 8999999999999999999998864311 1223334455688999999998878887765 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcE
Q 048718 668 MVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGV 732 (1118)
Q Consensus 668 Ll~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~ 732 (1118)
|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +.+++|++++|.+ |+
T Consensus 150 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~-~~~~~d~i~~l~~-g~ 212 (213)
T cd03262 150 LAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGF-AREVADRVIFMDD-GR 212 (213)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEeC-Cc
Confidence 999999999999999999999999999999998778999999999875 4578999999976 44
No 102
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=4.3e-40 Score=359.21 Aligned_cols=217 Identities=28% Similarity=0.399 Sum_probs=186.9
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh----------
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---------- 582 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---------- 582 (1118)
|+++||++.|+ ++++|+||||+|++||+++|+||||||||||||+|+|+++ +++|+|.++|.++..
T Consensus 1 i~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~ 76 (252)
T TIGR03005 1 VRFSDVTKRFG--ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLYHMPGRNGPLVP 76 (252)
T ss_pred CEEEEEEEEeC--CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccccc
Confidence 46899999994 3679999999999999999999999999999999999997 689999999987531
Q ss_pred ------hhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 048718 583 ------QSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISG 656 (1118)
Q Consensus 583 ------~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSG 656 (1118)
..+++.++|++|++.+++.+||.||+.++.... ...........++++++.+||.+..++.+.+ |||
T Consensus 77 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~ 149 (252)
T TIGR03005 77 ADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHMPAQ-----LSG 149 (252)
T ss_pred cchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcChhh-----cCH
Confidence 134678999999999999999999998864311 1223334445688999999998877777655 999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEE
Q 048718 657 GQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVY 735 (1118)
Q Consensus 657 GERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~ 735 (1118)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||+++. +.+++|++++|.+ |++++
T Consensus 150 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~-~~~~~d~i~~l~~-G~i~~ 227 (252)
T TIGR03005 150 GQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGF-AREFADRVCFFDK-GRIVE 227 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH-HHHhcCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998865 8999999999875 5578999999976 68999
Q ss_pred ecChhhH
Q 048718 736 HGPVKKV 742 (1118)
Q Consensus 736 ~G~~~~l 742 (1118)
.|+.+++
T Consensus 228 ~g~~~~~ 234 (252)
T TIGR03005 228 QGKPDEI 234 (252)
T ss_pred eCCHHHH
Confidence 9987765
No 103
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=4e-40 Score=352.78 Aligned_cols=209 Identities=24% Similarity=0.363 Sum_probs=180.4
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---h---hhc
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---Q---SYK 586 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~---~~r 586 (1118)
++++||++.|. +++.+|+|+||+|++||+++|+||||||||||+++|+|+++ +++|+|.++|.++.. . .++
T Consensus 2 l~~~~l~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~ 78 (222)
T PRK10908 2 IRFEHVSKAYL-GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDITRLKNREVPFLR 78 (222)
T ss_pred EEEEeeEEEec-CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCChhHHHHHH
Confidence 67899999994 23579999999999999999999999999999999999997 689999999987532 1 246
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 048718 587 RIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGL 666 (1118)
Q Consensus 587 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIAr 666 (1118)
+.++|++|++.+++.+||+||+.+..... .....+....++++++.+||.+..++.+.+ |||||||||+||+
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~lar 150 (222)
T PRK10908 79 RQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFPIQ-----LSGGEQQRVGIAR 150 (222)
T ss_pred hheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCchh-----CCHHHHHHHHHHH
Confidence 78999999998888999999999875432 223334445678899999998877777765 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEE
Q 048718 667 EMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIV 734 (1118)
Q Consensus 667 ALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv 734 (1118)
||+.+|++|||||||+|||+.++..+.+.|++++++|.|+|++||+++. +...+|++++|.+ |+++
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~-G~i~ 216 (222)
T PRK10908 151 AVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGL-ISRRSYRMLTLSD-GHLH 216 (222)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEc
Confidence 9999999999999999999999999999999987778999999999875 4578999999976 5654
No 104
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6e-41 Score=357.08 Aligned_cols=221 Identities=26% Similarity=0.407 Sum_probs=196.8
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh----hhhcC
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI----QSYKR 587 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r~ 587 (1118)
.+++++|+++| +.-++|+||||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.. +..|.
T Consensus 4 lL~v~~l~k~F--GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~--P~~G~v~~~G~~it~l~p~~iar~ 79 (250)
T COG0411 4 LLEVRGLSKRF--GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK--PSSGTVIFRGRDITGLPPHRIARL 79 (250)
T ss_pred eeeeccceeec--CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc--CCCceEEECCcccCCCCHHHHHhc
Confidence 47789999999 45789999999999999999999999999999999999998 799999999998742 23466
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhcc--------CC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRL--------SA-DLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQ 658 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~--------~~-~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGE 658 (1118)
.|+-.||...+|++|||.||+..++..+. +. .....+..+++.++|+.+||.+.+|++.++ ||+||
T Consensus 80 Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~-----LsyG~ 154 (250)
T COG0411 80 GIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGN-----LSYGQ 154 (250)
T ss_pred cceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhc-----CChhH
Confidence 79999999999999999999999865331 11 112445667889999999999999999988 99999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEec
Q 048718 659 RKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHG 737 (1118)
Q Consensus 659 RQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G 737 (1118)
|||+.|||||+++|+||+||||.+||.+....++.+.|+++.++ |.||++|.||++. +++++|+++||+. |+++.+|
T Consensus 155 qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~-Vm~l~dri~Vl~~-G~~IAeG 232 (250)
T COG0411 155 QRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKL-VMGLADRIVVLNY-GEVIAEG 232 (250)
T ss_pred hHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHH-HhhhccEEEeccC-CcCcccC
Confidence 99999999999999999999999999999999999999999974 7999999999986 5799999999986 6899999
Q ss_pred ChhhHH
Q 048718 738 PVKKVE 743 (1118)
Q Consensus 738 ~~~~l~ 743 (1118)
+++++.
T Consensus 233 ~P~eV~ 238 (250)
T COG0411 233 TPEEVR 238 (250)
T ss_pred CHHHHh
Confidence 999874
No 105
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-40 Score=372.74 Aligned_cols=221 Identities=23% Similarity=0.290 Sum_probs=190.2
Q ss_pred EEEEEeEEEEEcCC--------cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-
Q 048718 512 EVAFKDLTITLKGK--------NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI- 582 (1118)
Q Consensus 512 ~l~~knLs~~~~~~--------~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~- 582 (1118)
.|+++||++.|... ..++|+||||+|++||+++|+|+||||||||+++|+|+++ +.+|+|.++|+++..
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~--p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET--PTGGELYYQGQDLLKA 82 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEcCcC
Confidence 48899999999521 2579999999999999999999999999999999999997 689999999987632
Q ss_pred -----hhhcCeEEEEcCCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCC
Q 048718 583 -----QSYKRIIGFVPQDD--IVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-HIRDSLVGTVEKRGI 654 (1118)
Q Consensus 583 -----~~~r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-~~~dt~vg~~~~rgL 654 (1118)
..+++.|+||||++ .+.|.+||.+++.+..... ....+.+.+.++.++++.+||. ...++++++ |
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~-----L 155 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHYDRYPHM-----F 155 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHhcCCCcc-----C
Confidence 23567899999998 5888999999998765432 1234455566789999999996 356776655 9
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEE
Q 048718 655 SGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVI 733 (1118)
Q Consensus 655 SGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~i 733 (1118)
||||||||+|||||+.+|+|||+||||++||+.++.+|++.|+++.++ |.|||+||||++. +.+++|++++|++ |++
T Consensus 156 SgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~-~~~~adrv~vm~~-G~i 233 (327)
T PRK11308 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSV-VEHIADEVMVMYL-GRC 233 (327)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999864 9999999999875 4578999999986 699
Q ss_pred EEecChhhHH
Q 048718 734 VYHGPVKKVE 743 (1118)
Q Consensus 734 v~~G~~~~l~ 743 (1118)
++.|+.+++.
T Consensus 234 ve~g~~~~~~ 243 (327)
T PRK11308 234 VEKGTKEQIF 243 (327)
T ss_pred EEECCHHHHh
Confidence 9999988763
No 106
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-40 Score=357.05 Aligned_cols=216 Identities=25% Similarity=0.399 Sum_probs=185.1
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---h-hhcC
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---Q-SYKR 587 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~-~~r~ 587 (1118)
.++++||++.|. ++.+|+|+||+|++||+++|+|||||||||||++|+|+++ +++|+|.++|.++.. . ..++
T Consensus 5 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~ 80 (237)
T PRK11614 5 MLSFDKVSAHYG--KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDITDWQTAKIMRE 80 (237)
T ss_pred EEEEEeEEEeeC--CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEecCCCCHHHHHHh
Confidence 588999999994 4679999999999999999999999999999999999998 689999999987642 1 2456
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHc-CCCccccccccCccCCCCCHHHHHHHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESL-GLQHIRDSLVGTVEKRGISGGQRKRVNVGL 666 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~l-gL~~~~dt~vg~~~~rgLSGGERQRVsIAr 666 (1118)
.++|++|++.+++.+||.||+.++.... ........++++++.+ ++.+..++.+.+ |||||||||+|||
T Consensus 81 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~~~~-----LS~G~~qrl~la~ 150 (237)
T PRK11614 81 AVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQRAGT-----MSGGEQQMLAIGR 150 (237)
T ss_pred CEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCchhh-----CCHHHHHHHHHHH
Confidence 7999999999999999999998864321 1122234567778888 577666666654 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 667 EMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 667 ALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
+|+.+|+||||||||+|||+.++..+.+.|++++++|.|||++||+++. +.+.+|++++|.+ |++++.|+++++.
T Consensus 151 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~-G~i~~~~~~~~~~ 225 (237)
T PRK11614 151 ALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQ-ALKLADRGYVLEN-GHVVLEDTGDALL 225 (237)
T ss_pred HHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHH-HHhhCCEEEEEeC-CEEEeeCCHHHHh
Confidence 9999999999999999999999999999999988779999999999875 5689999999976 6899999988763
No 107
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-40 Score=359.16 Aligned_cols=220 Identities=22% Similarity=0.344 Sum_probs=186.8
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hh-hcC
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QS-YKR 587 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~-~r~ 587 (1118)
.++++||++.|. ++++|+|+||+|++||+++|+||||||||||+++|+|+++ +++|+|.++|.++.. .. .+.
T Consensus 5 ~l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~ 80 (255)
T PRK11300 5 LLSVSGLMMRFG--GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHIEGLPGHQIARM 80 (255)
T ss_pred eEEEeeEEEEEC--CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEECCCCCHHHHHhc
Confidence 488999999994 4679999999999999999999999999999999999998 689999999987642 12 244
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccC----------C--CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCC
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLS----------A--DLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGIS 655 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~----------~--~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLS 655 (1118)
.++|++|++.+++.+||+||+.++...... . .....+....++++++.+||.+..++.+++ ||
T Consensus 81 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LS 155 (255)
T PRK11300 81 GVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGN-----LA 155 (255)
T ss_pred CeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhh-----CC
Confidence 699999999999999999999986431110 0 001112334678899999998888888766 99
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEE
Q 048718 656 GGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIV 734 (1118)
Q Consensus 656 GGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv 734 (1118)
|||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++. +.+.+|++++|.+ |+++
T Consensus 156 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~-~~~~~d~i~~l~~-g~i~ 233 (255)
T PRK11300 156 YGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKL-VMGISDRIYVVNQ-GTPL 233 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CeEE
Confidence 99999999999999999999999999999999999999999999865 8999999999875 4578999999976 6899
Q ss_pred EecChhhH
Q 048718 735 YHGPVKKV 742 (1118)
Q Consensus 735 ~~G~~~~l 742 (1118)
+.|+++++
T Consensus 234 ~~~~~~~~ 241 (255)
T PRK11300 234 ANGTPEEI 241 (255)
T ss_pred ecCCHHHH
Confidence 99998765
No 108
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-40 Score=357.02 Aligned_cols=220 Identities=26% Similarity=0.383 Sum_probs=185.7
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEecC---hhhh
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC---IMSGTILVNGKVAS---IQSY 585 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~~---~~~~ 585 (1118)
.++++||++.|. ++.+|+|+||+|++||+++|+||||||||||+++|+|++++. +++|+|.++|.++. ...+
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFG--QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEEC--CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 478999999994 367999999999999999999999999999999999998632 47999999998763 2345
Q ss_pred cCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHHHHH
Q 048718 586 KRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH----IRDSLVGTVEKRGISGGQRKR 661 (1118)
Q Consensus 586 r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~----~~dt~vg~~~~rgLSGGERQR 661 (1118)
++.|+|++|++.+++.+||.||+.++...... .....+..+.++++++.+||.+ ..++.+. .||||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-----~LSgG~~qr 154 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAPAG-----KLSGGQQQR 154 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcc-----cCCHHHHHH
Confidence 67899999999888899999999987543211 1123344456889999999854 3455554 499999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhh
Q 048718 662 VNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKK 741 (1118)
Q Consensus 662 VsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~ 741 (1118)
|+|||||+.+|+||+|||||+|||+.++..+.+.|+++.+ |.|+|+++|+++. +.+.+|++++|.+ |++++.|++++
T Consensus 155 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~~~~~d~i~~l~~-G~i~~~g~~~~ 231 (250)
T PRK14247 155 LCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQQ-AARISDYVAFLYK-GQIVEWGPTRE 231 (250)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-HHHhcCEEEEEEC-CeEEEECCHHH
Confidence 9999999999999999999999999999999999999864 8999999999875 4578999999976 68999999877
Q ss_pred H
Q 048718 742 V 742 (1118)
Q Consensus 742 l 742 (1118)
+
T Consensus 232 ~ 232 (250)
T PRK14247 232 V 232 (250)
T ss_pred H
Confidence 6
No 109
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-40 Score=364.69 Aligned_cols=216 Identities=28% Similarity=0.410 Sum_probs=187.2
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh----hhhcCe
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI----QSYKRI 588 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r~~ 588 (1118)
++++||++.|++ ++.+|+||||+|++||+++|+|||||||||||++|+|+++ +++|+|.++|.++.. ..+++.
T Consensus 2 l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (274)
T PRK13644 2 IRLENVSYSYPD-GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTGDFSKLQGIRKL 78 (274)
T ss_pred EEEEEEEEEcCC-CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECCccccHHHHHhh
Confidence 678999999952 3569999999999999999999999999999999999997 689999999987632 245678
Q ss_pred EEEEcCCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 048718 589 IGFVPQDDI-VHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 589 IgyV~Qd~~-l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
|+|++|++. .+..+||.|||.+..... .....+..+.++++++.+||.+..++.+++ |||||||||+||+|
T Consensus 79 i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrv~lara 150 (274)
T PRK13644 79 VGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSPKT-----LSGGQGQCVALAGI 150 (274)
T ss_pred eEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCccc-----CCHHHHHHHHHHHH
Confidence 999999975 355689999999875432 234444456688999999999888887765 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 668 MVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 668 Ll~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
|+.+|+||||||||+|||+.++..+.+.|++++.+|.|||++||+++. + ..+|++++|.+ |++++.|+++++
T Consensus 151 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~-~-~~~d~v~~l~~-G~i~~~g~~~~~ 222 (274)
T PRK13644 151 LTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEE-L-HDADRIIVMDR-GKIVLEGEPENV 222 (274)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-H-hhCCEEEEEEC-CEEEEECCHHHH
Confidence 999999999999999999999999999999998779999999999985 4 56999999976 689999998775
No 110
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-40 Score=365.20 Aligned_cols=215 Identities=23% Similarity=0.368 Sum_probs=184.9
Q ss_pred EEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hh----hc
Q 048718 514 AFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QS----YK 586 (1118)
Q Consensus 514 ~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~----~r 586 (1118)
.++||++.|. ++.+|+|+||+|++||+++|+|||||||||||++|+|+++ +.+|+|.++|.++.. .. .+
T Consensus 26 ~~~~~~~~~~--~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~ 101 (269)
T cd03294 26 SKEEILKKTG--QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKELRELRR 101 (269)
T ss_pred hhhhhhhhcC--CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhhhhhhhc
Confidence 3557788883 5679999999999999999999999999999999999998 689999999987532 11 23
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 048718 587 RIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGL 666 (1118)
Q Consensus 587 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIAr 666 (1118)
+.++|++|++.+++.+||+||+.+..... ..........++++++.+||.+..++.+++ |||||||||+||+
T Consensus 102 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~Gq~qrv~lAr 173 (269)
T cd03294 102 KKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPDE-----LSGGMQQRVGLAR 173 (269)
T ss_pred CcEEEEecCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCccc-----CCHHHHHHHHHHH
Confidence 57999999999999999999999875432 122333445688999999999888888766 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 667 EMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 667 ALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
||+.+|+||||||||+|||+.++..+.+.|+++.++ |+|||++||+++. +.+.+|++++|.+ |++++.|+++++
T Consensus 174 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~-~~~~~d~v~~l~~-G~i~~~g~~~~~ 248 (269)
T cd03294 174 ALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDE-ALRLGDRIAIMKD-GRLVQVGTPEEI 248 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCEEEEEEC-CEEEEeCCHHHH
Confidence 999999999999999999999999999999998754 8999999999875 5688999999976 689999988765
No 111
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-40 Score=361.95 Aligned_cols=216 Identities=26% Similarity=0.430 Sum_probs=185.4
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-----hhhcC
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-----QSYKR 587 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-----~~~r~ 587 (1118)
|+++||++.|. ++.+|+|+||+|++||+++|+|||||||||||++|+|+++ |++|+|.++|+++.. ..+++
T Consensus 2 l~~~~l~~~~~--~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~ 77 (271)
T PRK13638 2 LATSDLWFRYQ--DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLDYSKRGLLALRQ 77 (271)
T ss_pred eEEEEEEEEcC--CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcccccCCHHHHHh
Confidence 67899999994 3579999999999999999999999999999999999998 689999999987631 23467
Q ss_pred eEEEEcCCCCC-CCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 048718 588 IIGFVPQDDIV-HGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGL 666 (1118)
Q Consensus 588 ~IgyV~Qd~~l-~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIAr 666 (1118)
.|+||+|++.+ +...|+.||+.+..... .....+....++++++.+||.+..++.+++ |||||||||+||+
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrl~lar 149 (271)
T PRK13638 78 QVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPIQC-----LSHGQKKRVAIAG 149 (271)
T ss_pred heEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCchh-----CCHHHHHHHHHHH
Confidence 89999999753 34568999998865432 223334445688899999998888877765 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 667 EMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 667 ALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
+|+.+|+||||||||+|||+.++..+.+.|++++++|.|||+++|+++. +.+++|++++|.+ |++++.|+++++
T Consensus 150 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~-~~~~~d~i~~l~~-G~i~~~g~~~~~ 223 (271)
T PRK13638 150 ALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDL-IYEISDAVYVLRQ-GQILTHGAPGEV 223 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEeCCHHHH
Confidence 9999999999999999999999999999999988779999999999875 4578999999976 689999998775
No 112
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-40 Score=357.43 Aligned_cols=220 Identities=22% Similarity=0.322 Sum_probs=184.0
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEecCh-----
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC---IMSGTILVNGKVASI----- 582 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~~~----- 582 (1118)
..++++||++.|. ++.+|+|+||+|++||+++|+|||||||||||++|+|++++. +++|+|.++|+++..
T Consensus 6 ~~l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 6 AIIETENLNLFYT--DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred ceEEEeeeEEEeC--CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 3589999999994 357999999999999999999999999999999999998742 258999999987531
Q ss_pred hhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccCCCCCHHH
Q 048718 583 QSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ----HIRDSLVGTVEKRGISGGQ 658 (1118)
Q Consensus 583 ~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~----~~~dt~vg~~~~rgLSGGE 658 (1118)
..+++.|+|++|++.+++ +||+||+.++..... ........+.++++++.+++. +..++.+. .|||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~-----~LSgG~ 155 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTNAL-----SLSGGQ 155 (254)
T ss_pred HHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcc-----cCCHHH
Confidence 235678999999998885 899999998754321 112333445678889999873 44566555 499999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecC
Q 048718 659 RKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGP 738 (1118)
Q Consensus 659 RQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~ 738 (1118)
||||+|||+|+.+|+||||||||+|||+.++..+++.|++++ ++.|||+++|+++. +.+.+|++++|.+ |+++..|+
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~~-~~~~~d~i~~l~~-G~i~~~g~ 232 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQQ-AGRISDRTAFFLN-GCIEEESS 232 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEeCC
Confidence 999999999999999999999999999999999999999986 47899999999975 4578999999976 68999999
Q ss_pred hhhHH
Q 048718 739 VKKVE 743 (1118)
Q Consensus 739 ~~~l~ 743 (1118)
++++.
T Consensus 233 ~~~~~ 237 (254)
T PRK14273 233 TDELF 237 (254)
T ss_pred HHHHH
Confidence 87763
No 113
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=6e-40 Score=355.19 Aligned_cols=223 Identities=26% Similarity=0.356 Sum_probs=183.1
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hh-hcCe
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QS-YKRI 588 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~-~r~~ 588 (1118)
|+++||++.|. ++.+|+|+||+|++||+++|+||||||||||||+|+|+.+..+++|+|.++|+++.. .. .+..
T Consensus 1 l~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVE--DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEEC--CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 46899999994 467999999999999999999999999999999999995211689999999987532 12 2345
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhccCC----CCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHHH
Q 048718 589 IGFVPQDDIVHGNLTVEENLWFSARCRLSA----DLPKAEKVLVVERVIESLGLQ-HIRDSLVGTVEKRGISGGQRKRVN 663 (1118)
Q Consensus 589 IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~----~~~~~~~~~~v~~lL~~lgL~-~~~dt~vg~~~~rgLSGGERQRVs 663 (1118)
++|++|++.+++.+||+||+.+........ .....+..++++++++.+||. +..++.++ ..|||||||||+
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrl~ 154 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EGFSGGEKKRNE 154 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cCcCHHHHHHHH
Confidence 999999999999999999998865432110 012223345688999999997 45566553 139999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhc-cCcEEEEecCcEEEEecChhhH
Q 048718 664 VGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRM-FDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 664 IArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~-~D~vivL~~GG~iv~~G~~~~l 742 (1118)
||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +... +|++++|.+ |++++.|+++++
T Consensus 155 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~ 232 (243)
T TIGR01978 155 ILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRL-LNYIKPDYVHVLLD-GRIVKSGDVELA 232 (243)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHH-HHhhcCCeEEEEeC-CEEEEecCHHHh
Confidence 9999999999999999999999999999999999998778999999999875 4456 799999975 689999998765
Q ss_pred H
Q 048718 743 E 743 (1118)
Q Consensus 743 ~ 743 (1118)
.
T Consensus 233 ~ 233 (243)
T TIGR01978 233 K 233 (243)
T ss_pred c
Confidence 4
No 114
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=6.7e-40 Score=355.18 Aligned_cols=218 Identities=27% Similarity=0.435 Sum_probs=185.9
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---h-hhcCe
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---Q-SYKRI 588 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~-~~r~~ 588 (1118)
++++||++.|+ ++++|+|+||+|++||+++|+|||||||||||++|+|+++ +.+|+|.++|.++.. . ..++.
T Consensus 3 i~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 3 LYLEGLSVSFD--GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred EEEEeeEEEcC--CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecCCCCHHHHHhcC
Confidence 68999999994 3579999999999999999999999999999999999987 689999999987532 1 23457
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhccC--C---CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 048718 589 IGFVPQDDIVHGNLTVEENLWFSARCRLS--A---DLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVN 663 (1118)
Q Consensus 589 IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~--~---~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVs 663 (1118)
++|++|++.+++.+||+||+.++...... . .........+++++++.+||.+..++.+++ |||||||||+
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~Ge~qrv~ 153 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGL-----LSHGQKQWLE 153 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHH
Confidence 99999999999999999999986432100 0 011223445688999999999888887766 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 664 VGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 664 IArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++. +.+++|++++|.+ |++++.|+.+++
T Consensus 154 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~-~~~~~d~i~~l~~-g~~~~~~~~~~~ 229 (242)
T TIGR03411 154 IGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEF-VRSIADKVTVLHQ-GSVLAEGSLDQV 229 (242)
T ss_pred HHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHH-HHHhCCEEEEEEC-CeEEeeCCHHHH
Confidence 99999999999999999999999999999999999875 7899999999875 5678999999976 689999988765
No 115
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.6e-40 Score=353.35 Aligned_cols=209 Identities=31% Similarity=0.525 Sum_probs=175.4
Q ss_pred EEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcC
Q 048718 515 FKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQ 594 (1118)
Q Consensus 515 ~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Q 594 (1118)
++||++.|. ++++|+|+||+|++||+++|+|||||||||||++|+|+++ |++|+|.++|+++. .+++.++|++|
T Consensus 2 ~~~l~~~~~--~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~--~~~~~i~~v~q 75 (213)
T cd03235 2 VEDLTVSYG--GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE--KERKRIGYVPQ 75 (213)
T ss_pred cccceeEEC--CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH--HHHhheEEecc
Confidence 578999994 3679999999999999999999999999999999999997 68999999998653 35678999999
Q ss_pred CCCCC--CCCCHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 048718 595 DDIVH--GNLTVEENLWFSARCRLS-ADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVME 671 (1118)
Q Consensus 595 d~~l~--~~LTV~EnL~f~a~lr~~-~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~ 671 (1118)
++.++ ..+||+||+.++...... ..........+++++++.+||.+..++.+++ |||||||||+||+||+.+
T Consensus 76 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~al~~~ 150 (213)
T cd03235 76 RRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGE-----LSGGQQQRVLLARALVQD 150 (213)
T ss_pred ccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCccc-----CCHHHHHHHHHHHHHHcC
Confidence 98763 347999999886432110 0011122345688999999998878887766 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEec
Q 048718 672 PSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHG 737 (1118)
Q Consensus 672 P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G 737 (1118)
|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +.+.+|++++|.+ | +++.|
T Consensus 151 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~-~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 151 PDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGL-VLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCEEEEEcC-c-EeecC
Confidence 99999999999999999999999999988778999999999875 4578999999964 4 66654
No 116
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-40 Score=356.38 Aligned_cols=220 Identities=25% Similarity=0.350 Sum_probs=184.5
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEecC-----hh
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC---IMSGTILVNGKVAS-----IQ 583 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~~-----~~ 583 (1118)
.++++||++.|. ++++|+|+||+|++||+++|+||||||||||+++|+|++++. +++|+|.++|+++. ..
T Consensus 4 ~l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYG--SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeC--CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 478999999994 357999999999999999999999999999999999998742 35999999998763 12
Q ss_pred hhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHHH
Q 048718 584 SYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH----IRDSLVGTVEKRGISGGQR 659 (1118)
Q Consensus 584 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~----~~dt~vg~~~~rgLSGGER 659 (1118)
.+++.++|++|++.+++.+||.||+.++...+. ......+....++++++.+||.. ..++.++ .||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-----~LS~G~~ 155 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNG-LVKSKKELDERVEWALKKAALWDEVKDRLNDYPS-----NLSGGQR 155 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcC-ccCCHHHHHHHHHHHHHHcCCccchhhhhccChh-----hCCHHHH
Confidence 456789999999999999999999998754321 11123334456788999999853 3455554 4999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecCh
Q 048718 660 KRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPV 739 (1118)
Q Consensus 660 QRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~ 739 (1118)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++. +.+++|++++|.+ |++++.|++
T Consensus 156 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~~~~~d~i~~l~~-G~i~~~~~~ 232 (253)
T PRK14267 156 QRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQ-AARVSDYVAFLYL-GKLIEVGPT 232 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHH-HHhhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999865 6899999999875 4578999999976 699999998
Q ss_pred hhH
Q 048718 740 KKV 742 (1118)
Q Consensus 740 ~~l 742 (1118)
+++
T Consensus 233 ~~~ 235 (253)
T PRK14267 233 RKV 235 (253)
T ss_pred HHH
Confidence 765
No 117
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=7.9e-40 Score=360.29 Aligned_cols=220 Identities=25% Similarity=0.385 Sum_probs=186.3
Q ss_pred EEEEeEEEEEcCC-------cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---
Q 048718 513 VAFKDLTITLKGK-------NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI--- 582 (1118)
Q Consensus 513 l~~knLs~~~~~~-------~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--- 582 (1118)
++++||++.|... ++.+|+|+||+|++||+++|+|||||||||||++|+|+++ +++|+|.++|+++..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 80 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLYQLDR 80 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEccccCH
Confidence 7899999999531 3679999999999999999999999999999999999998 689999999987632
Q ss_pred h---hhcCeEEEEcCCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCH
Q 048718 583 Q---SYKRIIGFVPQDD--IVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-HIRDSLVGTVEKRGISG 656 (1118)
Q Consensus 583 ~---~~r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-~~~dt~vg~~~~rgLSG 656 (1118)
. .+++.|+|++|++ .+++.+||+||+.+..... ..........+++++++.+||. +..++.+++ |||
T Consensus 81 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~-----LSg 153 (265)
T TIGR02769 81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKLPRQ-----LSG 153 (265)
T ss_pred HHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCChhh-----CCH
Confidence 1 2466799999997 4667899999998765321 1222333445688999999996 667777665 999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEE
Q 048718 657 GQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVY 735 (1118)
Q Consensus 657 GERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~ 735 (1118)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|+++. +.+++|++++|.+ |++++
T Consensus 154 Ge~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~-~~~~~d~i~~l~~-G~i~~ 231 (265)
T TIGR02769 154 GQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRL-VQSFCQRVAVMDK-GQIVE 231 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH-HHHHhcEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999999865 8999999999875 4578999999975 68999
Q ss_pred ecChhhHH
Q 048718 736 HGPVKKVE 743 (1118)
Q Consensus 736 ~G~~~~l~ 743 (1118)
.|+.+++.
T Consensus 232 ~g~~~~~~ 239 (265)
T TIGR02769 232 ECDVAQLL 239 (265)
T ss_pred ECCHHHHc
Confidence 99987763
No 118
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-40 Score=358.85 Aligned_cols=220 Identities=27% Similarity=0.457 Sum_probs=187.0
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcCe
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKRI 588 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 588 (1118)
.++++||+++|+ ++.+|+|+||+|++||+++|+|+|||||||||++|+|+++ +++|+|.++|.++. ...+++.
T Consensus 2 ~l~~~~l~~~~~--~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~ 77 (255)
T PRK11231 2 TLRTENLTVGYG--TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPISMLSSRQLARR 77 (255)
T ss_pred EEEEEeEEEEEC--CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhHHCCHHHHhhh
Confidence 478999999994 4679999999999999999999999999999999999987 68999999998753 2345667
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 048718 589 IGFVPQDDIVHGNLTVEENLWFSARCRLS-ADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 589 IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~-~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
++|++|+..+++.+||.||+.++...... ...........++++++.+||.+..++.+++ |||||||||+||+|
T Consensus 78 i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~lara 152 (255)
T PRK11231 78 LALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTD-----LSGGQRQRAFLAMV 152 (255)
T ss_pred eEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCccc-----CCHHHHHHHHHHHH
Confidence 99999999888889999999886321100 0111122344678899999998888887765 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 668 MVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 668 Ll~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +.+.+|++++|.+ |++++.|+.+++
T Consensus 153 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~-~~~~~d~i~~l~~-G~i~~~~~~~~~ 225 (255)
T PRK11231 153 LAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQ-ASRYCDHLVVLAN-GHVMAQGTPEEV 225 (255)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHH-HHHhcCEEEEEEC-CeEEEEcCHHHh
Confidence 999999999999999999999999999999988779999999999875 5688999999976 689999987765
No 119
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=8.8e-40 Score=358.76 Aligned_cols=218 Identities=31% Similarity=0.469 Sum_probs=186.8
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcCe
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKRI 588 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~ 588 (1118)
.++++||++.|+ ++.+|+|+||+|++||+++|+|||||||||||++|+|+++ +++|+|.++|.++.. ..+++.
T Consensus 2 ~l~~~~l~~~~~--~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~ 77 (258)
T PRK13548 2 MLEARNLSVRLG--GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLADWSPAELARR 77 (258)
T ss_pred eEEEEeEEEEeC--CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcccCCHHHhhhh
Confidence 378999999995 3679999999999999999999999999999999999987 689999999987532 234567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 048718 589 IGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEM 668 (1118)
Q Consensus 589 IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArAL 668 (1118)
++|++|++.+++.+||+||+.++.... ..........++++++.+||.+..++.+++ |||||||||+||+||
T Consensus 78 i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGe~qrv~la~al 149 (258)
T PRK13548 78 RAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDYPQ-----LSGGEQQRVQLARVL 149 (258)
T ss_pred eEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCccc-----CCHHHHHHHHHHHHH
Confidence 999999998888899999999864321 111222334678999999998888888766 999999999999999
Q ss_pred h------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhh
Q 048718 669 V------MEPSLLILDEPTSGLDSSSSQLLLRALRREA-LEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKK 741 (1118)
Q Consensus 669 l------~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la-~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~ 741 (1118)
+ .+|++|+|||||+|||+.++..+.+.|++++ +.|.|||++||+++. +.+++|++++|.+ |++++.|++++
T Consensus 150 ~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~-G~i~~~~~~~~ 227 (258)
T PRK13548 150 AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNL-AARYADRIVLLHQ-GRLVADGTPAE 227 (258)
T ss_pred hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH-HHHhcCEEEEEEC-CEEEeeCCHHH
Confidence 9 5999999999999999999999999999998 568999999999875 4578999999976 68999998876
Q ss_pred HH
Q 048718 742 VE 743 (1118)
Q Consensus 742 l~ 743 (1118)
+.
T Consensus 228 ~~ 229 (258)
T PRK13548 228 VL 229 (258)
T ss_pred Hh
Confidence 53
No 120
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-39 Score=357.86 Aligned_cols=218 Identities=22% Similarity=0.349 Sum_probs=184.3
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEecCh-----
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC---IMSGTILVNGKVASI----- 582 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~~~----- 582 (1118)
..++++||++.|. ++.+|+|+||+|++||+++|+|+|||||||||++|+|+.++. +++|+|.++|.++..
T Consensus 11 ~~l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 11 PQIKVENLNLWYG--EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eeEEEeeeEEEeC--CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 3588999999994 467999999999999999999999999999999999998631 379999999987531
Q ss_pred hhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccCCCCCHHH
Q 048718 583 QSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ----HIRDSLVGTVEKRGISGGQ 658 (1118)
Q Consensus 583 ~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~----~~~dt~vg~~~~rgLSGGE 658 (1118)
..+++.++|++|++.+++ +||+||+.+..... ..........++++++.+|+. +..++.+++ |||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~-----LSgG~ 159 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSPALS-----LSGGQ 159 (258)
T ss_pred HHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhh-----CCHHH
Confidence 235677999999998887 89999999875432 223333445688899999984 345555554 99999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecC
Q 048718 659 RKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGP 738 (1118)
Q Consensus 659 RQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~ 738 (1118)
||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ |.|||++||+++. +.+.+|++++|.+ |++++.|+
T Consensus 160 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~~-~~~~~d~i~~l~~-G~i~~~~~ 236 (258)
T PRK14268 160 QQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQQ-AARISDYTGFFLM-GELIEFGQ 236 (258)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHHH-HHHhCCEEEEEEC-CEEEEeCC
Confidence 9999999999999999999999999999999999999999864 7999999999875 4578999999976 68999999
Q ss_pred hhhH
Q 048718 739 VKKV 742 (1118)
Q Consensus 739 ~~~l 742 (1118)
++++
T Consensus 237 ~~~~ 240 (258)
T PRK14268 237 TRQI 240 (258)
T ss_pred HHHH
Confidence 8765
No 121
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-39 Score=361.87 Aligned_cols=219 Identities=29% Similarity=0.445 Sum_probs=188.2
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcCe
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKRI 588 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~ 588 (1118)
.++++||++.|.+ .+.+|+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. ..+++.
T Consensus 3 ~l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~ 79 (277)
T PRK13652 3 LIETRDLCYSYSG-SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPITKENIREVRKF 79 (277)
T ss_pred eEEEEEEEEEeCC-CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHhh
Confidence 4789999999952 3469999999999999999999999999999999999998 689999999987632 345678
Q ss_pred EEEEcCCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 048718 589 IGFVPQDDI-VHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 589 IgyV~Qd~~-l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
++|++|++. .+...||.||+.+..... ........++++++++.+||.+..++.+.. |||||||||+||+|
T Consensus 80 i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~Gq~qrl~lara 151 (277)
T PRK13652 80 VGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVPHH-----LSGGEKKRVAIAGV 151 (277)
T ss_pred eEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCccc-----CCHHHHHHHHHHHH
Confidence 999999973 233679999998875422 233444455788999999999888887765 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 668 MVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 668 Ll~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
|+.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++||+++. +.+.+|++++|.+ |++++.|+++++.
T Consensus 152 L~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~~~~~drv~~l~~-G~i~~~g~~~~~~ 226 (277)
T PRK13652 152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL-VPEMADYIYVMDK-GRIVAYGTVEEIF 226 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEEC-CeEEEECCHHHHh
Confidence 99999999999999999999999999999999865 8999999999875 4578999999976 6899999988763
No 122
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-39 Score=362.19 Aligned_cols=220 Identities=25% Similarity=0.415 Sum_probs=189.3
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCce---eEEEECCEecCh---hh
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMS---GTILVNGKVASI---QS 584 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~s---G~I~inG~~~~~---~~ 584 (1118)
..|+++||++.|++..+.+|+||||+|++||+++|+||||||||||+++|+|+++ +.+ |+|.++|.++.. ..
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~--p~~g~~G~i~i~g~~~~~~~~~~ 81 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL--PDDNPNSKITVDGITLTAKTVWD 81 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC--CCCCCCcEEEECCEECCcCCHHH
Confidence 3588999999995434569999999999999999999999999999999999997 455 999999988642 24
Q ss_pred hcCeEEEEcCCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 048718 585 YKRIIGFVPQDDI-VHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVN 663 (1118)
Q Consensus 585 ~r~~IgyV~Qd~~-l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVs 663 (1118)
+++.|||++|++. +++.+||+|||.|..... .....+..++++++++.+||.+..++.+.+ |||||||||+
T Consensus 82 ~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----LS~G~~qrv~ 153 (282)
T PRK13640 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEPAN-----LSGGQKQRVA 153 (282)
T ss_pred HHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCccc-----CCHHHHHHHH
Confidence 5678999999974 566789999999875432 234455556789999999999888887765 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 664 VGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 664 IArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++.. ..+|++++|.+ |++++.|+++++
T Consensus 154 laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~--~~~d~i~~l~~-G~i~~~g~~~~~ 230 (282)
T PRK13640 154 IAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA--NMADQVLVLDD-GKLLAQGSPVEI 230 (282)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH--HhCCEEEEEEC-CEEEEeCCHHHH
Confidence 999999999999999999999999999999999999865 99999999999864 47999999976 699999998876
Q ss_pred H
Q 048718 743 E 743 (1118)
Q Consensus 743 ~ 743 (1118)
.
T Consensus 231 ~ 231 (282)
T PRK13640 231 F 231 (282)
T ss_pred h
Confidence 3
No 123
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-39 Score=359.96 Aligned_cols=218 Identities=27% Similarity=0.437 Sum_probs=187.0
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-----hhhcC
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-----QSYKR 587 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-----~~~r~ 587 (1118)
++++||++.|. +.+.+|+||||+|++||+++|+||||||||||+++|+|+++ +.+|+|.++|+++.. ..+++
T Consensus 2 l~~~~l~~~~~-~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (275)
T PRK13639 2 LETRDLKYSYP-DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIKYDKKSLLEVRK 78 (275)
T ss_pred EEEEEEEEEeC-CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECccccchHHHHHh
Confidence 67999999995 23569999999999999999999999999999999999998 689999999987631 23567
Q ss_pred eEEEEcCCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 048718 588 IIGFVPQDDI-VHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGL 666 (1118)
Q Consensus 588 ~IgyV~Qd~~-l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIAr 666 (1118)
.|+|++|++. .+..+||.||+.++.... .....+...++.++++.+||.+..++++++ |||||||||+||+
T Consensus 79 ~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----LS~Gq~qrv~lar 150 (275)
T PRK13639 79 TVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPPHH-----LSGGQKKRVAIAG 150 (275)
T ss_pred heEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCChhh-----CCHHHHHHHHHHH
Confidence 8999999963 333579999998864321 223444455688999999999888888776 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 667 EMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 667 ALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|+++. +.+++|++++|.+ |++++.|+++++.
T Consensus 151 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~-~~~~~d~i~~l~~-G~i~~~g~~~~~~ 225 (275)
T PRK13639 151 ILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDL-VPVYADKVYVMSD-GKIIKEGTPKEVF 225 (275)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEEEEC-CEEEEeCCHHHHh
Confidence 9999999999999999999999999999999998779999999999875 4578999999976 6899999988763
No 124
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-39 Score=358.60 Aligned_cols=218 Identities=25% Similarity=0.397 Sum_probs=187.7
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcCe
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKRI 588 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~ 588 (1118)
.++++||++.|.+..+.+|+|+|++|++||+++|+||||||||||+++|+|+++ +.+|+|.++|.++.. ..+++.
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHhh
Confidence 588999999996433569999999999999999999999999999999999998 689999999987632 345678
Q ss_pred EEEEcCCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 048718 589 IGFVPQDDI-VHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 589 IgyV~Qd~~-l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
++|++|++. +++..||.+|+.+..... ........+.++++++.+||.+..++.+.+ |||||||||+||||
T Consensus 85 i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~lara 156 (269)
T PRK13648 85 IGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEPNA-----LSGGQKQRVAIAGV 156 (269)
T ss_pred eeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCccc-----CCHHHHHHHHHHHH
Confidence 999999974 677789999998875432 223344445688999999998888877765 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 668 MVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 668 Ll~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
|+.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++||+++.. . .+|++++|.+ |++++.|+++++
T Consensus 157 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~-~-~~d~i~~l~~-G~i~~~g~~~~~ 229 (269)
T PRK13648 157 LALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEA-M-EADHVIVMNK-GTVYKEGTPTEI 229 (269)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHH-h-cCCEEEEEEC-CEEEEecCHHHH
Confidence 99999999999999999999999999999998764 89999999999864 3 4999999976 699999998876
No 125
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-39 Score=369.79 Aligned_cols=223 Identities=19% Similarity=0.292 Sum_probs=187.4
Q ss_pred EEEEEeEEEEEcCCc--ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--CCceeEEEECCEecCh---hh
Q 048718 512 EVAFKDLTITLKGKN--KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPG--CIMSGTILVNGKVASI---QS 584 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~--k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~--~~~sG~I~inG~~~~~---~~ 584 (1118)
.|+++||++.|.... .++|+||||+|++||+++|+|+||||||||+++|+|++++ .+++|+|.++|+++.. ..
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 478999999996422 4699999999999999999999999999999999999863 1379999999988632 11
Q ss_pred ---h-cCeEEEEcCCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCccCCCCC
Q 048718 585 ---Y-KRIIGFVPQDD--IVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH---IRDSLVGTVEKRGIS 655 (1118)
Q Consensus 585 ---~-r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~---~~dt~vg~~~~rgLS 655 (1118)
+ ++.|+||||++ .+.|.+||.+++....... ......+.++++.++++.+||.+ ..+++++ .||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~--~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~-----~LS 155 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVH--QGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPH-----QLS 155 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCChHHHHhCCch-----hCC
Confidence 2 24699999998 4788999999988765432 12344455667899999999974 3455554 499
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEecCcEEE
Q 048718 656 GGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAKGGVIV 734 (1118)
Q Consensus 656 GGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv 734 (1118)
|||||||+|||||+.+|+|||+||||+|||+.++.++++.|+++.+ .|.|+|+||||++. +.+++|++++|++ |+++
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~-~~~~adri~vm~~-G~iv 233 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLAL-VAEAAHKIIVMYA-GQVV 233 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEE
Confidence 9999999999999999999999999999999999999999999986 59999999999985 4578999999976 6999
Q ss_pred EecChhhHH
Q 048718 735 YHGPVKKVE 743 (1118)
Q Consensus 735 ~~G~~~~l~ 743 (1118)
+.|+++++.
T Consensus 234 e~g~~~~~~ 242 (326)
T PRK11022 234 ETGKAHDIF 242 (326)
T ss_pred EECCHHHHh
Confidence 999988763
No 126
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-39 Score=355.99 Aligned_cols=220 Identities=26% Similarity=0.366 Sum_probs=185.3
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEecC-----hh
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC---IMSGTILVNGKVAS-----IQ 583 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~~-----~~ 583 (1118)
.++++||+++|+ ++++|+|+||+|++||+++|+|||||||||||++|+|+.++. +++|+|.++|+++. ..
T Consensus 4 ~l~i~~v~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYG--SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEEC--CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 478999999995 357999999999999999999999999999999999998632 26999999998752 12
Q ss_pred hhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccCCCCCHHHH
Q 048718 584 SYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ----HIRDSLVGTVEKRGISGGQR 659 (1118)
Q Consensus 584 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~----~~~dt~vg~~~~rgLSGGER 659 (1118)
.+++.++|++|++.+++.+||+||+.++...+. ........+.++++++.+||. +..++.++ .||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-----~LS~G~~ 154 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKPGG-----GLSGGQQ 154 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcc-----cCCHHHH
Confidence 456789999999999999999999998764321 112334445678899999984 34555554 4999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEe-----cCcEEE
Q 048718 660 KRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLA-----KGGVIV 734 (1118)
Q Consensus 660 QRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~-----~GG~iv 734 (1118)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++. +.+.+|++++|. +.|+++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~~-~~~~~d~i~~l~~~~~~~~g~i~ 232 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQQ-AARVSDQTAFFNLEATGKPGRLV 232 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHH-HHHhCCEEEEEecccCCCCceEE
Confidence 999999999999999999999999999999999999999864 6899999999875 457899999997 247999
Q ss_pred EecChhhH
Q 048718 735 YHGPVKKV 742 (1118)
Q Consensus 735 ~~G~~~~l 742 (1118)
+.|+++++
T Consensus 233 ~~~~~~~~ 240 (258)
T PRK14241 233 EIDDTEKI 240 (258)
T ss_pred ecCCHHHH
Confidence 99998776
No 127
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-40 Score=359.88 Aligned_cols=220 Identities=25% Similarity=0.416 Sum_probs=187.4
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcCe
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKRI 588 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 588 (1118)
.++++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ +++|+|.++|.++. ...+++.
T Consensus 11 ~l~i~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~ 86 (265)
T PRK10575 11 TFALRNVSFRVP--GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPLESWSSKAFARK 86 (265)
T ss_pred eEEEeeEEEEEC--CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEehhhCCHHHHhhh
Confidence 589999999994 3689999999999999999999999999999999999997 68999999998753 2345678
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 048718 589 IGFVPQDDIVHGNLTVEENLWFSARCRLS-ADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 589 IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~-~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
++|++|++.+++.+||.||+.++...... ...........++++++.+||.+..++++++ |||||||||+||+|
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~lara 161 (265)
T PRK10575 87 VAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDS-----LSGGERQRAWIAML 161 (265)
T ss_pred eEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCccc-----CCHHHHHHHHHHHH
Confidence 99999998888899999999876421110 0011122345678999999998878888766 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 668 MVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 668 Ll~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
|+.+|+||||||||+|||+.++..+.+.|++++++ |.|||++||+++. +.+.+|++++|.+ |++++.|+.+++
T Consensus 162 l~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~-i~~~~d~i~~l~~-G~i~~~~~~~~~ 235 (265)
T PRK10575 162 VAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINM-AARYCDYLVALRG-GEMIAQGTPAEL 235 (265)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CeEEEecCHHHh
Confidence 99999999999999999999999999999999765 8999999999875 5578999999976 689999988765
No 128
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-39 Score=378.17 Aligned_cols=203 Identities=22% Similarity=0.338 Sum_probs=178.9
Q ss_pred eeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hh----hcCeEEEEcCCCCCCC
Q 048718 528 HLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QS----YKRIIGFVPQDDIVHG 600 (1118)
Q Consensus 528 ~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~----~r~~IgyV~Qd~~l~~ 600 (1118)
.+|+|+||+|++||+++|+||||||||||||+|+|+++ |++|+|.++|.++.. .. .++.++||+|++.+++
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~ 119 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMP 119 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCC
Confidence 48999999999999999999999999999999999998 689999999988642 11 2457999999999999
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 048718 601 NLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEP 680 (1118)
Q Consensus 601 ~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEP 680 (1118)
++||+||+.|+...+ .....+..++++++++.+||.+..++++.+ |||||||||+|||||+.+|+|||||||
T Consensus 120 ~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~-----LSgGq~QRv~LArAL~~~P~iLLLDEP 191 (400)
T PRK10070 120 HMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHSYPDE-----LSGGMRQRVGLARALAINPDILLMDEA 191 (400)
T ss_pred CCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhcCccc-----CCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 999999999986543 233444556788999999999888888765 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 681 TSGLDSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 681 TsGLD~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
|+|||+.++..+.+.|+++.+ .|+|||++||++++ +.+++|++++|.+ |++++.|+++++
T Consensus 192 ts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~-~~~~~Dri~vL~~-G~i~~~g~~~~l 252 (400)
T PRK10070 192 FSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDE-AMRIGDRIAIMQN-GEVVQVGTPDEI 252 (400)
T ss_pred CccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHH-HHHhCCEEEEEEC-CEEEecCCHHHH
Confidence 999999999999999999875 58999999999875 4588999999976 689999998775
No 129
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.4e-39 Score=349.57 Aligned_cols=211 Identities=25% Similarity=0.323 Sum_probs=180.2
Q ss_pred EEEEEeEEEEEcCCc--ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---h---
Q 048718 512 EVAFKDLTITLKGKN--KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---Q--- 583 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~--k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~--- 583 (1118)
.|+++||++.|..+. +.+|+|+||+|++||+++|+|||||||||||++|+|+++ +++|+|.++|+++.. .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEcccCCHHHHH
Confidence 488999999995322 359999999999999999999999999999999999997 689999999987632 1
Q ss_pred hh-cCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 048718 584 SY-KRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRV 662 (1118)
Q Consensus 584 ~~-r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRV 662 (1118)
.+ ++.++|++|++.+++.+||.||+.+....+ .....+..++++++++.+||.+..++.+.+ |||||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~Ge~qrl 155 (228)
T PRK10584 84 KLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLPAQ-----LSGGEQQRV 155 (228)
T ss_pred HHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChhh-----CCHHHHHHH
Confidence 12 357999999999999999999998865432 123334456788999999998888887765 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEE
Q 048718 663 NVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVY 735 (1118)
Q Consensus 663 sIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~ 735 (1118)
+||+||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|+++. + +.+|++++|.+ |++++
T Consensus 156 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~i~~l~~-g~i~~ 226 (228)
T PRK10584 156 ALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQL-A-ARCDRRLRLVN-GQLQE 226 (228)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEEC-CEEEe
Confidence 9999999999999999999999999999999999999764 8999999999875 4 55999999976 67764
No 130
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-40 Score=359.08 Aligned_cols=207 Identities=22% Similarity=0.317 Sum_probs=181.6
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEE
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGF 591 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 591 (1118)
.|+++||+++|. ++.+|+|+||+|++||+++|+|||||||||||++|+|+++ +++|+|.++|.++. .+++.++|
T Consensus 12 ~l~i~~l~~~~~--~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~--~~~~~i~~ 85 (257)
T PRK11247 12 PLLLNAVSKRYG--ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPLA--EAREDTRL 85 (257)
T ss_pred cEEEEEEEEEEC--CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEHH--HhhCceEE
Confidence 488999999994 3679999999999999999999999999999999999998 68999999997652 45678999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 048718 592 VPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVME 671 (1118)
Q Consensus 592 V~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~ 671 (1118)
++|++.+++.+||+||+.+... . .....+.++++.+||.+..++.+.+ |||||||||+||++|+.+
T Consensus 86 v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~~~~-----LSgGqkqrl~laraL~~~ 151 (257)
T PRK11247 86 MFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEWPAA-----LSGGQKQRVALARALIHR 151 (257)
T ss_pred EecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCChhh-----CCHHHHHHHHHHHHHhcC
Confidence 9999999998999999988531 0 1124578899999998888877765 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 672 PSLLILDEPTSGLDSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 672 P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
|++|||||||+|||+.++..+.+.|+++.+ .|.|||++||+++. +.+.+|++++|.+ |++++.|+.+
T Consensus 152 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~-~~~~~d~i~~l~~-G~i~~~~~~~ 219 (257)
T PRK11247 152 PGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSE-AVAMADRVLLIEE-GKIGLDLTVD 219 (257)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEeecccc
Confidence 999999999999999999999999999865 58999999999875 4578999999976 6888887754
No 131
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=8.5e-40 Score=351.77 Aligned_cols=213 Identities=29% Similarity=0.470 Sum_probs=182.1
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---h-hhcCe
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---Q-SYKRI 588 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~-~~r~~ 588 (1118)
|+++||++.|+ ++++|+|+||+|++||+++|+|||||||||||++|+|+++ +.+|+|.++|.++.. . ..++.
T Consensus 1 l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (230)
T TIGR03410 1 LEVSNLNVYYG--QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITKLPPHERARAG 76 (230)
T ss_pred CEEEeEEEEeC--CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHHHHHHhC
Confidence 46899999994 4679999999999999999999999999999999999998 689999999987632 1 23567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC-CCccccccccCccCCCCCHHHHHHHHHHHH
Q 048718 589 IGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLG-LQHIRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 589 IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lg-L~~~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
++|++|++.+++.+||.||+.++...+ ... .....+++++.++ +.+..++.+.+ |||||||||+||++
T Consensus 77 i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~---~~~~~~~~l~~~~~l~~~~~~~~~~-----LS~G~~qrv~la~a 145 (230)
T TIGR03410 77 IAYVPQGREIFPRLTVEENLLTGLAAL---PRR---SRKIPDEIYELFPVLKEMLGRRGGD-----LSGGQQQQLAIARA 145 (230)
T ss_pred eEEeccCCcccCCCcHHHHHHHHHHhc---Ccc---hHHHHHHHHHHHHhHHHHhhCChhh-----CCHHHHHHHHHHHH
Confidence 999999999999999999999875432 111 1223577788886 56667777665 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 668 MVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 668 Ll~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.+.+|++++|.+ |++++.|+.+++
T Consensus 146 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~~~~d~v~~l~~-g~i~~~~~~~~~ 219 (230)
T TIGR03410 146 LVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDF-ARELADRYYVMER-GRVVASGAGDEL 219 (230)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEECCHHHc
Confidence 99999999999999999999999999999998864 8999999999875 4568999999976 689999998776
No 132
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-39 Score=352.81 Aligned_cols=220 Identities=24% Similarity=0.327 Sum_probs=182.5
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC---CCCCceeEEEECCEecCh-----
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRV---PGCIMSGTILVNGKVASI----- 582 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~---~~~~~sG~I~inG~~~~~----- 582 (1118)
..++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+. ++.+++|+|.++|+++..
T Consensus 2 ~~l~~~~~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 2 VKIDARDVNFWYG--DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred cEEEEEEEEEEEC--CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 3578999999994 467999999999999999999999999999999999973 321258999999987632
Q ss_pred hhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHH
Q 048718 583 QSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH----IRDSLVGTVEKRGISGGQ 658 (1118)
Q Consensus 583 ~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~----~~dt~vg~~~~rgLSGGE 658 (1118)
..+++.++|++|++.+++ .||.||+.++...+. ..........++++++.+||.+ ..++.+. .|||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-----~LS~G~ 151 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKLKESAF-----ALSGGQ 151 (250)
T ss_pred HHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcc-----cCCHHH
Confidence 245678999999998887 699999998754321 1112233456788999999864 3455444 499999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecC
Q 048718 659 RKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGP 738 (1118)
Q Consensus 659 RQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~ 738 (1118)
||||+|||||+.+|++|||||||+|||+.++..+.+.|+++. ++.|||++||+++. +.+.+|++++|.+ |++++.|+
T Consensus 152 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~-~~~~~d~v~~l~~-G~~~~~~~ 228 (250)
T PRK14245 152 QQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQQ-AARVSDKTAFFYM-GEMVEYDD 228 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHH-HHhhCCEEEEEEC-CEEEEECC
Confidence 999999999999999999999999999999999999999985 57999999999875 4578999999976 68999999
Q ss_pred hhhHH
Q 048718 739 VKKVE 743 (1118)
Q Consensus 739 ~~~l~ 743 (1118)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14245 229 TKKIF 233 (250)
T ss_pred HHHHh
Confidence 88763
No 133
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-39 Score=368.05 Aligned_cols=224 Identities=18% Similarity=0.256 Sum_probs=184.4
Q ss_pred EEEEEeEEEEEcC--CcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--CCceeEEEECCEecCh---hh
Q 048718 512 EVAFKDLTITLKG--KNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPG--CIMSGTILVNGKVASI---QS 584 (1118)
Q Consensus 512 ~l~~knLs~~~~~--~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~--~~~sG~I~inG~~~~~---~~ 584 (1118)
.|+++||++.|.. +...+|+||||+|++||+++|+|+||||||||+++|+|++++ .+++|+|.++|+++.. ..
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 4789999999953 235799999999999999999999999999999999999862 2478999999987632 11
Q ss_pred ----hcCeEEEEcCCCC--CCCCCCHHHHHHHHHhhccCCC---CCHHHHHHHHHHHHHHcCCCc---cccccccCccCC
Q 048718 585 ----YKRIIGFVPQDDI--VHGNLTVEENLWFSARCRLSAD---LPKAEKVLVVERVIESLGLQH---IRDSLVGTVEKR 652 (1118)
Q Consensus 585 ----~r~~IgyV~Qd~~--l~~~LTV~EnL~f~a~lr~~~~---~~~~~~~~~v~~lL~~lgL~~---~~dt~vg~~~~r 652 (1118)
.++.|+||||++. +.|.+||.+++.+......... ....+...++.++++.+||.+ ..++++.
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~----- 157 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPY----- 157 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCch-----
Confidence 2357999999985 6788999999987543211100 111233457889999999975 3455554
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCc
Q 048718 653 GISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGG 731 (1118)
Q Consensus 653 gLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG 731 (1118)
.|||||||||+||+||+.+|+|||+||||+|||+.++.++++.|+++.++ |.|||+||||++. +.+++|++++|.+ |
T Consensus 158 ~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~-v~~~~dri~vm~~-G 235 (330)
T PRK15093 158 ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQM-LSQWADKINVLYC-G 235 (330)
T ss_pred hCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH-HHHhCCEEEEEEC-C
Confidence 49999999999999999999999999999999999999999999999864 9999999999875 4578999999976 6
Q ss_pred EEEEecChhhH
Q 048718 732 VIVYHGPVKKV 742 (1118)
Q Consensus 732 ~iv~~G~~~~l 742 (1118)
++++.|+.+++
T Consensus 236 ~ive~g~~~~i 246 (330)
T PRK15093 236 QTVETAPSKEL 246 (330)
T ss_pred EEEEECCHHHH
Confidence 99999998776
No 134
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1.3e-39 Score=356.44 Aligned_cols=219 Identities=28% Similarity=0.422 Sum_probs=186.0
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcCeE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKRII 589 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~I 589 (1118)
++++|+++.|. ++.+|+|+||+|++||+++|+|||||||||||++|+|+++ +++|+|.++|.++.. ...++.+
T Consensus 2 l~~~~l~~~~~--~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i 77 (256)
T TIGR03873 2 LRLSRVSWSAG--GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLHGLSRRARARRV 77 (256)
T ss_pred ceEEeEEEEEC--CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcccCCHHHHhhhe
Confidence 67899999994 4679999999999999999999999999999999999998 689999999987532 2345679
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 048718 590 GFVPQDDIVHGNLTVEENLWFSARCRLS-ADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEM 668 (1118)
Q Consensus 590 gyV~Qd~~l~~~LTV~EnL~f~a~lr~~-~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArAL 668 (1118)
+|++|++.+++.+||+||+.++...... ......+...++.++++.+||.+..++.++. |||||||||+||+||
T Consensus 78 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~al 152 (256)
T TIGR03873 78 ALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMST-----LSGGERQRVHVARAL 152 (256)
T ss_pred EEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCccc-----CCHHHHHHHHHHHHH
Confidence 9999998888889999999885321100 0111122334688999999998888887765 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 669 VMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 669 l~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
+.+|+++||||||+|||+.++..+.+.|+++.++|.|||+++|+++. +.+.+|++++|.+ |++++.|+.+++
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~-G~i~~~g~~~~~ 224 (256)
T TIGR03873 153 AQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNL-AASYCDHVVVLDG-GRVVAAGPPREV 224 (256)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEeC-CCEEEecCHHHh
Confidence 99999999999999999999999999999998778999999999985 4578999999976 689999988765
No 135
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6e-40 Score=337.17 Aligned_cols=222 Identities=28% Similarity=0.463 Sum_probs=197.1
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFV 592 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV 592 (1118)
+.+.+++.+|.+..+.+|+|||++|.+||.++++||||||||||||+++|+.+ |..|+|.+||+++.-. -..-|.|
T Consensus 4 l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gP--gaergvV 79 (259)
T COG4525 4 LNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGP--GAERGVV 79 (259)
T ss_pred eehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCC--CccceeE
Confidence 45677899997655679999999999999999999999999999999999998 6899999999987532 2234999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCC
Q 048718 593 PQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEP 672 (1118)
Q Consensus 593 ~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P 672 (1118)
||++.++|.+||.||+.|+++++ ++.+.++.+++.+.+..+||.+..++++-+ |||||||||.|||||+.+|
T Consensus 80 FQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~q-----LSGGmrQRvGiARALa~eP 151 (259)
T COG4525 80 FQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYIWQ-----LSGGMRQRVGIARALAVEP 151 (259)
T ss_pred eccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccceEe-----ecchHHHHHHHHHHhhcCc
Confidence 99999999999999999999876 678889999999999999999988888765 9999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEecC-cEEEEecChhhHHHHHH
Q 048718 673 SLLILDEPTSGLDSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAKG-GVIVYHGPVKKVEEYFA 747 (1118)
Q Consensus 673 ~lLlLDEPTsGLD~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~G-G~iv~~G~~~~l~~yf~ 747 (1118)
++|+||||+++||.-+++.+.++|-++.+ .|+.+++|||+.+++++ ++++++||+-+ |+++..-+++=.+.|.+
T Consensus 152 ~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlf-latrLvvlsp~pgRvv~~~~~df~rR~aa 227 (259)
T COG4525 152 QLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALF-LATRLVVLSPGPGRVVERLPLDFARRYAA 227 (259)
T ss_pred ceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHh-hhheeEEecCCCceeeEecCCCHHHHhhc
Confidence 99999999999999999999999988875 59999999999998875 89999999743 68998887775555543
No 136
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.5e-39 Score=357.07 Aligned_cols=222 Identities=24% Similarity=0.437 Sum_probs=186.8
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CceeEEEECCEecCh--------
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC-IMSGTILVNGKVASI-------- 582 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~-~~sG~I~inG~~~~~-------- 582 (1118)
.++++||++.|. ++++|+|+||+|.+||+++|+|||||||||||++|+|++++. +.+|+|.++|.++..
T Consensus 4 ~l~~~nl~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFN--QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeC--CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 478999999994 467999999999999999999999999999999999999742 236999999987531
Q ss_pred hhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccC-----CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 048718 583 QSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLS-----ADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGG 657 (1118)
Q Consensus 583 ~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~-----~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGG 657 (1118)
..+++.++|+||++.+++.+||+||+.+......+ ......+.+.+++++++.+||.+..++.+++ ||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G 156 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVST-----LSGG 156 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccc-----cCHH
Confidence 23456799999999999999999999876421100 0111223345688999999998888887766 9999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEe
Q 048718 658 QRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYH 736 (1118)
Q Consensus 658 ERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~ 736 (1118)
|||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ .|.|||++||+++. +.+.+|++++|.+ |++++.
T Consensus 157 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~-~~~~~d~i~~l~~-g~i~~~ 234 (262)
T PRK09984 157 QQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDY-ALRYCERIVALRQ-GHVFYD 234 (262)
T ss_pred HHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEe
Confidence 99999999999999999999999999999999999999999985 48999999999875 4578999999976 689999
Q ss_pred cChhhH
Q 048718 737 GPVKKV 742 (1118)
Q Consensus 737 G~~~~l 742 (1118)
|+++++
T Consensus 235 g~~~~~ 240 (262)
T PRK09984 235 GSSQQF 240 (262)
T ss_pred CCHHHh
Confidence 988654
No 137
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-39 Score=358.14 Aligned_cols=221 Identities=28% Similarity=0.426 Sum_probs=188.1
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcC
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKR 587 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~ 587 (1118)
..|.++||+++|+ ++.+|+|+||+|.+||+++|+|||||||||||++|+|+++ +++|+|.++|+++.. ..+++
T Consensus 6 ~~l~i~~l~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~ 81 (265)
T PRK10253 6 ARLRGEQLTLGYG--KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEHIQHYASKEVAR 81 (265)
T ss_pred cEEEEEEEEEEEC--CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEEhhhCCHHHHhh
Confidence 4688999999995 4679999999999999999999999999999999999997 689999999987532 33456
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccC--CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLS--ADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVG 665 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~--~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIA 665 (1118)
.++|++|++.+++.+||+||+.++...... .... ......++++++.+||.+..++.+.+ |||||||||+||
T Consensus 82 ~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~Gq~qrv~la 155 (265)
T PRK10253 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWR-KEDEEAVTKAMQATGITHLADQSVDT-----LSGGQRQRAWIA 155 (265)
T ss_pred heEEeeccCcCCCCCcHHHHHHhCcccccccccCCC-HHHHHHHHHHHHHcCCHHHhcCCccc-----CChHHHHHHHHH
Confidence 799999999999899999999875311100 0111 22334678999999998888887765 999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 666 LEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 666 rALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
|||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|+++. +.+++|++++|.+ |++++.|+++++.
T Consensus 156 ral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~-~~~~~d~i~~l~~-G~i~~~g~~~~~~ 232 (265)
T PRK10253 156 MVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQ-ACRYASHLIALRE-GKIVAQGAPKEIV 232 (265)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999864 8999999999875 5689999999976 6899999987753
No 138
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=2.4e-39 Score=367.67 Aligned_cols=227 Identities=23% Similarity=0.344 Sum_probs=188.3
Q ss_pred eEEEEEeEEEEEcC--CcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CceeEEEECCEecCh---hh
Q 048718 511 IEVAFKDLTITLKG--KNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC-IMSGTILVNGKVASI---QS 584 (1118)
Q Consensus 511 ~~l~~knLs~~~~~--~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~-~~sG~I~inG~~~~~---~~ 584 (1118)
..++++||++.|.. +...+|+||||+|++||+++|+|+||||||||+++|+|++++. ..+|+|.++|+++.. ..
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~ 90 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKE 90 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHH
Confidence 35899999999953 2357999999999999999999999999999999999999731 149999999988632 22
Q ss_pred ---hc-CeEEEEcCCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH
Q 048718 585 ---YK-RIIGFVPQDD--IVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQ 658 (1118)
Q Consensus 585 ---~r-~~IgyV~Qd~--~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGE 658 (1118)
+| +.|+||||++ .++|.+||.+++.+..... ......+...++.++++.+||.+..+. .+ ..++.|||||
T Consensus 91 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~--~~~~~~~~~~~~~~~L~~vgL~~~~~~-~~-~~p~~LSgG~ 166 (330)
T PRK09473 91 LNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLH--KGMSKAEAFEESVRMLDAVKMPEARKR-MK-MYPHEFSGGM 166 (330)
T ss_pred HHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCCChHHH-hc-CCcccCCHHH
Confidence 23 4799999998 6889999999998775443 123445555678899999999753221 11 2455699999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEec
Q 048718 659 RKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHG 737 (1118)
Q Consensus 659 RQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G 737 (1118)
||||+||+||+.+|+|||+||||+|||+.++.++++.|+++.++ |.|+|+||||++. +.+++|++++|.+ |++++.|
T Consensus 167 ~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~-~~~~~Dri~vm~~-G~ive~g 244 (330)
T PRK09473 167 RQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGV-VAGICDKVLVMYA-GRTMEYG 244 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHH-HHHhCCEEEEEEC-CEEEEEC
Confidence 99999999999999999999999999999999999999999865 9999999999875 4578999999976 6999999
Q ss_pred ChhhHH
Q 048718 738 PVKKVE 743 (1118)
Q Consensus 738 ~~~~l~ 743 (1118)
+++++.
T Consensus 245 ~~~~i~ 250 (330)
T PRK09473 245 NARDVF 250 (330)
T ss_pred CHHHHH
Confidence 998763
No 139
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-39 Score=360.20 Aligned_cols=218 Identities=23% Similarity=0.371 Sum_probs=188.0
Q ss_pred EEEEEeEEEEEcCC----cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh----h
Q 048718 512 EVAFKDLTITLKGK----NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI----Q 583 (1118)
Q Consensus 512 ~l~~knLs~~~~~~----~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~ 583 (1118)
.++++||+++|++. .+.+|+||||+|++||+++|+|+||||||||+++|+|+++ +++|+|.++|.++.. .
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i~~~~~~~ 81 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDTSDEENLW 81 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeccccccHH
Confidence 48899999999632 3579999999999999999999999999999999999998 689999999987642 2
Q ss_pred hhcCeEEEEcCCCC--CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 048718 584 SYKRIIGFVPQDDI--VHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKR 661 (1118)
Q Consensus 584 ~~r~~IgyV~Qd~~--l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQR 661 (1118)
.+++.+||+||++. ++ ..||.||+.|+.... .....+..+.++++++.+||.+..++.+++ ||||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----LS~G~~qr 152 (280)
T PRK13633 82 DIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAPHL-----LSGGQKQR 152 (280)
T ss_pred HHhhheEEEecChhhhhc-cccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCccc-----CCHHHHHH
Confidence 35678999999974 34 469999999875432 234445556789999999999888888766 99999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 662 VNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 662 VsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
|+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++.. . .+|++++|.+ |++++.|+++
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~-~-~~d~v~~l~~-G~i~~~g~~~ 229 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEA-V-EADRIIVMDS-GKVVMEGTPK 229 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHH-h-cCCEEEEEEC-CEEEEecCHH
Confidence 99999999999999999999999999999999999999764 99999999999864 3 4999999976 6899999988
Q ss_pred hHH
Q 048718 741 KVE 743 (1118)
Q Consensus 741 ~l~ 743 (1118)
++.
T Consensus 230 ~~~ 232 (280)
T PRK13633 230 EIF 232 (280)
T ss_pred HHh
Confidence 764
No 140
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-39 Score=361.23 Aligned_cols=219 Identities=22% Similarity=0.360 Sum_probs=184.6
Q ss_pred eEEEEEeEEEEEcCCc---ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC------
Q 048718 511 IEVAFKDLTITLKGKN---KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS------ 581 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~---k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~------ 581 (1118)
..|+++||++.|+++. ..+|+|+||+|++||+++|+||||||||||||+|+|+++ +++|+|.++|.++.
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~ 82 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAIPANLKKI 82 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccccccc
Confidence 3588999999995321 359999999999999999999999999999999999997 68999999998752
Q ss_pred --hhhhcCeEEEEcCCCC--CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCH
Q 048718 582 --IQSYKRIIGFVPQDDI--VHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-HIRDSLVGTVEKRGISG 656 (1118)
Q Consensus 582 --~~~~r~~IgyV~Qd~~--l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-~~~dt~vg~~~~rgLSG 656 (1118)
...+++.|+|++|++. ++ ..||+||+.|+.... .....+....++++++.++|. +..++.+++ |||
T Consensus 83 ~~~~~~~~~i~~v~q~~~~~~~-~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~-----LS~ 153 (289)
T PRK13645 83 KEVKRLRKEIGLVFQFPEYQLF-QETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSPFE-----LSG 153 (289)
T ss_pred ccHHHHhccEEEEEeCcchhhh-hhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCChhh-----CCH
Confidence 1245678999999973 34 469999999875421 223334445678899999994 667777665 999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEE
Q 048718 657 GQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVY 735 (1118)
Q Consensus 657 GERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~ 735 (1118)
||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++.++ |+|||++||+++. +.+.+|++++|.+ |++++
T Consensus 154 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~-~~~~~d~i~~l~~-G~i~~ 231 (289)
T PRK13645 154 GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQ-VLRIADEVIVMHE-GKVIS 231 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 8999999999875 5688999999976 68999
Q ss_pred ecChhhH
Q 048718 736 HGPVKKV 742 (1118)
Q Consensus 736 ~G~~~~l 742 (1118)
.|+.+++
T Consensus 232 ~g~~~~~ 238 (289)
T PRK13645 232 IGSPFEI 238 (289)
T ss_pred eCCHHHH
Confidence 9998775
No 141
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-39 Score=345.81 Aligned_cols=209 Identities=28% Similarity=0.453 Sum_probs=176.8
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-hhhcCeEEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-QSYKRIIGF 591 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Igy 591 (1118)
+.++|+++.|.+ +. .|+||+|++||+++|+|||||||||||++|+|+++ +++|+|.++|.++.. ...++.++|
T Consensus 1 i~~~~l~~~~~~--~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGE--QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTAAPPADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCC--Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCcCCHhHccEEE
Confidence 468999999942 33 39999999999999999999999999999999998 689999999987642 223567999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 048718 592 VPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVME 671 (1118)
Q Consensus 592 V~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~ 671 (1118)
++|++.+++.+||+||+.++..... .. ....+..++++++.+||.+..++.+.+ |||||||||+||+||+.+
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~ia~al~~~ 146 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLPGE-----LSGGERQRVALARVLVRD 146 (211)
T ss_pred EecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCccc-----CCHHHHHHHHHHHHHhcC
Confidence 9999999999999999988643211 11 122345688999999999888887765 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEec
Q 048718 672 PSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHG 737 (1118)
Q Consensus 672 P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G 737 (1118)
|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++. +.+++|++++|.+ |++++.|
T Consensus 147 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~~~~d~i~~l~~-G~i~~~~ 211 (211)
T cd03298 147 KPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPED-AKRLAQRVVFLDN-GRIAAQG 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHhhhCEEEEEEC-CEEeecC
Confidence 9999999999999999999999999999754 8999999999875 4578999999976 6877654
No 142
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=2.2e-39 Score=347.31 Aligned_cols=210 Identities=26% Similarity=0.420 Sum_probs=183.1
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFV 592 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV 592 (1118)
++++|+++.|. ++.+|+|+||+|++||+++|+|||||||||||++|+|+++ +++|+|.++|.+..... ++.++|+
T Consensus 1 l~l~~v~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~~~-~~~~~~~ 75 (223)
T TIGR03740 1 LETKNLSKRFG--KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTRKD-LHKIGSL 75 (223)
T ss_pred CEEEeEEEEEC--CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccccc-cccEEEE
Confidence 46899999994 4679999999999999999999999999999999999987 68999999998764322 3579999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCC
Q 048718 593 PQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEP 672 (1118)
Q Consensus 593 ~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P 672 (1118)
+|++.+++.+||+||+.+....+ ... ...+.++++.+||.+..++.+.+ |||||||||+|||||+.+|
T Consensus 76 ~q~~~~~~~~t~~~~~~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~~rv~laral~~~p 143 (223)
T TIGR03740 76 IESPPLYENLTARENLKVHTTLL---GLP----DSRIDEVLNIVDLTNTGKKKAKQ-----FSLGMKQRLGIAIALLNHP 143 (223)
T ss_pred cCCCCccccCCHHHHHHHHHHHc---CCC----HHHHHHHHHHcCCcHHHhhhHhh-----CCHHHHHHHHHHHHHhcCC
Confidence 99999999999999998875432 111 13477899999999888887765 9999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhh
Q 048718 673 SLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKK 741 (1118)
Q Consensus 673 ~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~ 741 (1118)
++|+|||||+|||+.++..+.+.|++++++|.|||++||+++. +.+.+|++++|.+ |++++.|++.+
T Consensus 144 ~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~-g~i~~~~~~~~ 210 (223)
T TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSE-VQQLADHIGIISE-GVLGYQGKINK 210 (223)
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH-HHHhcCEEEEEeC-CEEEEecChhh
Confidence 9999999999999999999999999998779999999999875 5578999999976 68999998753
No 143
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.1e-40 Score=349.31 Aligned_cols=221 Identities=29% Similarity=0.457 Sum_probs=204.7
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEE
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGF 591 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 591 (1118)
.+++++|+++| +++.+++|+||++++|+|++++|||||||||.+|+|.|++. +++|+|.++|.+++. ..+.+|||
T Consensus 2 ~L~ie~vtK~F--g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~~-~~~~rIGy 76 (300)
T COG4152 2 ALEIEGVTKSF--GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQ-EIKNRIGY 76 (300)
T ss_pred ceEEecchhcc--CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchhh-hhhhhccc
Confidence 47899999999 56889999999999999999999999999999999999998 689999999998753 45678999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 048718 592 VPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVME 671 (1118)
Q Consensus 592 V~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~ 671 (1118)
+|++-.|++.+||.|.|.|.+.++ ++++.+.+..++.+|+++++.....++|.+ ||.|++|++.+..+++++
T Consensus 77 LPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kIk~-----LSKGnqQKIQfisaviHe 148 (300)
T COG4152 77 LPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKIKE-----LSKGNQQKIQFISAVIHE 148 (300)
T ss_pred ChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchHHH-----hhhhhhHHHHHHHHHhcC
Confidence 999999999999999999999875 788889899999999999999988888876 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHHHHHH
Q 048718 672 PSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVEEYFA 747 (1118)
Q Consensus 672 P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~~yf~ 747 (1118)
|+++|||||+|||||.+.+.+-+.+.+++.+|.|||+++|.++. +.++||++++|.+ |+.|.+|+.++++.-|.
T Consensus 149 PeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~-vEeLCD~llmL~k-G~~V~~G~v~~ir~~~G 222 (300)
T COG4152 149 PELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEH-VEELCDRLLMLKK-GQTVLYGTVEDIRRSFG 222 (300)
T ss_pred CCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHH-HHHHhhhhheecC-CceEEeccHHHHHHhcC
Confidence 99999999999999999999999999999999999999999975 5799999999976 68899999999986553
No 144
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-39 Score=351.86 Aligned_cols=218 Identities=25% Similarity=0.367 Sum_probs=181.5
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC---CCCceeEEEECCEecCh-----h
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVP---GCIMSGTILVNGKVASI-----Q 583 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~---~~~~sG~I~inG~~~~~-----~ 583 (1118)
.|+++||+++|. ++.+|+|+||+|++||+++|+|||||||||||++|+|+.+ +.+++|+|.++|+++.. .
T Consensus 6 ~l~~~~l~~~~~--~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYG--DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEEC--CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 488999999994 3579999999999999999999999999999999999863 11479999999987632 2
Q ss_pred hhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHHH
Q 048718 584 SYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH----IRDSLVGTVEKRGISGGQR 659 (1118)
Q Consensus 584 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~----~~dt~vg~~~~rgLSGGER 659 (1118)
.+++.++|++|++.+++ .||+||+.++...+. ........+.++++++.+||.+ ..++.++ .||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-----~LSgGq~ 155 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRLHESAL-----GLSGGQQ 155 (253)
T ss_pred HHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcc-----cCCHHHH
Confidence 35678999999998887 599999998754321 1122333456788999999854 2344444 4999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecCh
Q 048718 660 KRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPV 739 (1118)
Q Consensus 660 QRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~ 739 (1118)
|||+|||||+.+|+||||||||+|||+.++..+.+.|+++. +++|||++||+++. +.+.+|++++|.+ |++++.|++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~~-~~~~~d~v~~l~~-G~i~~~g~~ 232 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQQ-AARVSDVTAFFYM-GKLIEVGPT 232 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHHH-HHHhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999999999999999985 47899999999875 4578999999976 689999988
Q ss_pred hhH
Q 048718 740 KKV 742 (1118)
Q Consensus 740 ~~l 742 (1118)
+++
T Consensus 233 ~~~ 235 (253)
T PRK14242 233 EQI 235 (253)
T ss_pred HHH
Confidence 765
No 145
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-39 Score=351.56 Aligned_cols=219 Identities=23% Similarity=0.347 Sum_probs=182.6
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CCceeEEEECCEecCh---hhhcC
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPG-CIMSGTILVNGKVASI---QSYKR 587 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~-~~~sG~I~inG~~~~~---~~~r~ 587 (1118)
.++++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|++++ .+++|+|.++|+++.. ..+++
T Consensus 2 ~~~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYG--KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEEC--CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 467899999995 36799999999999999999999999999999999999752 2579999999987642 34567
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHHHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH----IRDSLVGTVEKRGISGGQRKRVN 663 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~----~~dt~vg~~~~rgLSGGERQRVs 663 (1118)
.++|+||++.+++ .||+||+.++...+. ..........+++++++.++|.. ..+..+ +.|||||||||+
T Consensus 80 ~i~~~~q~~~l~~-~tv~eni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS~G~~qrv~ 152 (246)
T PRK14269 80 NVGMVFQQPNVFV-KSIYENISYAPKLHG-MIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNA-----LALSGGQQQRLC 152 (246)
T ss_pred hEEEEecCCcccc-ccHHHHhhhHHhhcC-cccChHHHHHHHHHHHHHcCCChhhhHHhcCCc-----ccCCHHHHHHHH
Confidence 8999999998887 699999998754321 00012233456788999999953 344444 459999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 664 VGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 664 IArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
|||||+.+|+||+|||||+|||+.++..+.+.|+++.. |+|+|++||+++. +.+.+|++++|.+ |++++.|+.+++
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~-~~~~~d~i~~l~~-G~i~~~g~~~~~ 228 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQQ-GKRVADYTAFFHL-GELIEFGESKEF 228 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHH-HHhhCcEEEEEEC-CEEEEECCHHHH
Confidence 99999999999999999999999999999999999864 8999999999875 4578999999976 699999998765
No 146
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-39 Score=353.85 Aligned_cols=220 Identities=22% Similarity=0.327 Sum_probs=184.6
Q ss_pred ceEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCceeEEEECCEecCh----
Q 048718 510 TIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPG---CIMSGTILVNGKVASI---- 582 (1118)
Q Consensus 510 ~~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~---~~~sG~I~inG~~~~~---- 582 (1118)
...++++|+++.|+ ++.+|+|+|++|++||+++|+||||||||||+++|+|++++ .+++|+|.++|+++..
T Consensus 11 ~~~l~~~~l~~~~~--~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYG--KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeC--CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 34689999999994 35799999999999999999999999999999999999852 1479999999987631
Q ss_pred -hhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccCCCCCHH
Q 048718 583 -QSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ----HIRDSLVGTVEKRGISGG 657 (1118)
Q Consensus 583 -~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~----~~~dt~vg~~~~rgLSGG 657 (1118)
..+++.|+|++|++.+++ +||+||+.+...... .....+..++++++++.++|. +..++.++ .||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-----~LS~G 160 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQSGY-----SLSGG 160 (260)
T ss_pred hHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCC-----CCCHH
Confidence 245678999999998887 899999998754321 223344445688999999984 33455554 49999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEec
Q 048718 658 QRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHG 737 (1118)
Q Consensus 658 ERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G 737 (1118)
|||||+||+||+.+|+||||||||+|||+.++..+.+.|+++. ++.|||++||+++. +.+.+|++++|.+ |++++.|
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~~-~~~~~d~i~~l~~-G~i~~~g 237 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQQ-AARCSDYTAFMYL-GELIEFG 237 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEeC
Confidence 9999999999999999999999999999999999999999985 47899999999875 5578999999976 6899999
Q ss_pred ChhhH
Q 048718 738 PVKKV 742 (1118)
Q Consensus 738 ~~~~l 742 (1118)
+++++
T Consensus 238 ~~~~~ 242 (260)
T PRK10744 238 NTDTI 242 (260)
T ss_pred CHHHH
Confidence 98765
No 147
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-39 Score=351.77 Aligned_cols=212 Identities=26% Similarity=0.433 Sum_probs=182.4
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcCe
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKRI 588 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~ 588 (1118)
.++++||++.|. ++.+|+|+||+|.+||+++|+|||||||||||++|+|+.+ |++|+|.++|.++.. ..+++.
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~ 78 (241)
T PRK14250 3 EIEFKEVSYSSF--GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDIKTIDVIDLRRK 78 (241)
T ss_pred eEEEEeEEEEeC--CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcChHHhhhc
Confidence 578999999994 4579999999999999999999999999999999999997 689999999987532 345678
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHHHHHHH
Q 048718 589 IGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-HIRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 589 IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-~~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
++|++|++.+++ .||+||+.+....+ . . ...++.++++.+||. +..++.+.+ |||||||||+||+|
T Consensus 79 i~~~~q~~~~~~-~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~~~~-----LS~G~~qrl~la~a 145 (241)
T PRK14250 79 IGMVFQQPHLFE-GTVKDNIEYGPMLK---G--E--KNVDVEYYLSIVGLNKEYATRDVKN-----LSGGEAQRVSIART 145 (241)
T ss_pred EEEEecCchhch-hhHHHHHhcchhhc---C--c--HHHHHHHHHHHcCCCHHHhhCCccc-----CCHHHHHHHHHHHH
Confidence 999999998886 69999998764321 1 1 123577899999996 566666654 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 668 MVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 668 Ll~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++. +.+.+|++++|.+ |++++.|+++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~-~~~~~d~i~~l~~-G~i~~~~~~~~~ 219 (241)
T PRK14250 146 LANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQ-AKRIGDYTAFLNK-GILVEYAKTYDF 219 (241)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHH-HHHhCCEEEEEeC-CEEEEeCCHHHH
Confidence 99999999999999999999999999999998864 9999999999875 4578999999976 689999988765
No 148
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-40 Score=393.30 Aligned_cols=224 Identities=28% Similarity=0.460 Sum_probs=189.6
Q ss_pred ceEEEEEeEEEEEcCC-cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhh
Q 048718 510 TIEVAFKDLTITLKGK-NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSY 585 (1118)
Q Consensus 510 ~~~l~~knLs~~~~~~-~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~ 585 (1118)
...|+|+||+|.|+.+ +.+||+|+||+|+|||++||+||||+||||+.++|-.++. |++|+|++||+|+. ...+
T Consensus 463 ~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG~~i~~~~~~~l 540 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTSGRILLDGVPISDINHKYL 540 (716)
T ss_pred cceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCeehhhcCHHHH
Confidence 4579999999999854 4579999999999999999999999999999999999998 79999999999874 3568
Q ss_pred cCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 048718 586 KRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVG 665 (1118)
Q Consensus 586 r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIA 665 (1118)
|+.||+|-|+|.||.. ||+|||.|+......+++....+.+.+++.+. ++.+.+||.||+ ..-.||||||||++||
T Consensus 541 r~~Ig~V~QEPvLFs~-sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~--~~p~gY~T~VGE-kG~qLSGGQKQRIAIA 616 (716)
T KOG0058|consen 541 RRKIGLVGQEPVLFSG-SIRENIAYGLDNATDEEIEAAAKMANAHEFIT--NFPDGYNTVVGE-KGSQLSGGQKQRIAIA 616 (716)
T ss_pred HHHeeeeeccceeecc-cHHHHHhcCCCCCCHHHHHHHHHHhChHHHHH--hCccccccccCC-ccccccchHHHHHHHH
Confidence 8999999999999965 99999999865211111112223334555554 568889999997 3346999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 666 LEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 666 rALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
|||+++|.||||||.||+||+++...+.++|.++.+ ++|||+|.|.++. .+.+|+|+|+++ |++++.|.-+|+.
T Consensus 617 RALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLST--V~~Ad~Ivvi~~-G~V~E~G~h~eLl 690 (716)
T KOG0058|consen 617 RALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLST--VRHADQIVVIDK-GRVVEMGTHDELL 690 (716)
T ss_pred HHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhhH--hhhccEEEEEcC-CeEEecccHHHHh
Confidence 999999999999999999999999999999988764 5999999999874 489999999976 6999999887764
No 149
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=3e-39 Score=372.18 Aligned_cols=206 Identities=26% Similarity=0.400 Sum_probs=180.8
Q ss_pred cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEe----cC---hh---hh-cCeEEEEcC
Q 048718 526 NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKV----AS---IQ---SY-KRIIGFVPQ 594 (1118)
Q Consensus 526 ~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~----~~---~~---~~-r~~IgyV~Q 594 (1118)
...+|+|+||+|++||+++|+|+|||||||||++|+|+++ |++|+|+++|++ +. .. .+ ++.|+||||
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ 113 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQ 113 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEEC
Confidence 4578999999999999999999999999999999999998 689999999962 21 11 22 257999999
Q ss_pred CCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCE
Q 048718 595 DDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSL 674 (1118)
Q Consensus 595 d~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~l 674 (1118)
++.+++++||+||+.|+.... ...+.+.+.+++++++.+||.+..++++++ |||||||||+|||||+.+|+|
T Consensus 114 ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~~~-----LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 114 KFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKPGE-----LSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999986532 234455566789999999999888888876 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 675 LILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 675 LlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
|||||||+|||+.++.++.+.|+++.++ |+|||++|||+++ +.+++|++++|.+ |+++..|+++++.
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e-~~~l~DrI~vl~~-G~iv~~g~~~ei~ 253 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDE-ALKIGNRIAIMEG-GRIIQHGTPEEIV 253 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEecCHHHHh
Confidence 9999999999999999999999999865 9999999999986 4589999999976 6899999998763
No 150
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-39 Score=354.25 Aligned_cols=220 Identities=25% Similarity=0.355 Sum_probs=183.9
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCceeEEEECCEecCh-----
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPG---CIMSGTILVNGKVASI----- 582 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~---~~~sG~I~inG~~~~~----- 582 (1118)
..|+++||++.|. ++.+|+|+||+|++||+++|+|||||||||||++|+|++++ .+++|+|+++|+++..
T Consensus 18 ~~l~~~nl~~~~~--~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~ 95 (267)
T PRK14235 18 IKMRARDVSVFYG--EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95 (267)
T ss_pred ceEEEEeEEEEEC--CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccch
Confidence 3689999999994 46799999999999999999999999999999999999863 1479999999987632
Q ss_pred hhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHH
Q 048718 583 QSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH----IRDSLVGTVEKRGISGGQ 658 (1118)
Q Consensus 583 ~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~----~~dt~vg~~~~rgLSGGE 658 (1118)
..+++.++|++|++.+++. ||.||+.++...+. ......+....++++++.+||.+ ..++.++ .|||||
T Consensus 96 ~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-----~LSgGq 168 (267)
T PRK14235 96 VELRARVGMVFQKPNPFPK-SIYENVAYGPRIHG-LARSKAELDEIVETSLRKAGLWEEVKDRLHEPGT-----GLSGGQ 168 (267)
T ss_pred HHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcc-cccchHHHHHHHHHHHHHcCCchhhhHHhhCCcc-----cCCHHH
Confidence 2356789999999988875 99999998764321 11122333456788999999964 3444544 499999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecC
Q 048718 659 RKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGP 738 (1118)
Q Consensus 659 RQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~ 738 (1118)
||||+|||||+.+|++|||||||+|||+.++..+.+.|++++. +.|||+++|+++. +.+.+|++++|.+ |++++.|+
T Consensus 169 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~-~~~~~d~v~~l~~-G~i~~~g~ 245 (267)
T PRK14235 169 QQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQ-AARVSQRTAFFHL-GNLVEVGD 245 (267)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHH-HHhhCCEEEEEEC-CEEEEeCC
Confidence 9999999999999999999999999999999999999999865 7899999999875 4578999999976 68999998
Q ss_pred hhhH
Q 048718 739 VKKV 742 (1118)
Q Consensus 739 ~~~l 742 (1118)
.+++
T Consensus 246 ~~~~ 249 (267)
T PRK14235 246 TEKM 249 (267)
T ss_pred HHHH
Confidence 8765
No 151
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-39 Score=356.03 Aligned_cols=219 Identities=21% Similarity=0.381 Sum_probs=188.2
Q ss_pred EEEEEeEEEEEcCC-cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcC
Q 048718 512 EVAFKDLTITLKGK-NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKR 587 (1118)
Q Consensus 512 ~l~~knLs~~~~~~-~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~ 587 (1118)
.|+++||++.|.+. .+.+|+|+|++|++||+++|+|+||||||||+++|+|+++ +.+|+|.++|+++.. ..+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~~~~~~~~~~ 81 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAENVWNLRR 81 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEECCcCCHHHHhc
Confidence 47899999999632 2469999999999999999999999999999999999998 689999999987642 34577
Q ss_pred eEEEEcCCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 048718 588 IIGFVPQDDI-VHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGL 666 (1118)
Q Consensus 588 ~IgyV~Qd~~-l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIAr 666 (1118)
.|||++|++. .++..||.|||.++.... .....+..++++++++.+||.+..++.+.. |||||||||+|||
T Consensus 82 ~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~lAr 153 (277)
T PRK13642 82 KIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREPAR-----LSGGQKQRVAVAG 153 (277)
T ss_pred ceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCccc-----CCHHHHHHHHHHH
Confidence 8999999974 566789999998865421 223444445788999999998888877765 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 667 EMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 667 ALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++.. ..+|++++|.+ |++++.|+++++.
T Consensus 154 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~--~~~d~i~~l~~-G~i~~~g~~~~~~ 228 (277)
T PRK13642 154 IIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEA--ASSDRILVMKA-GEIIKEAAPSELF 228 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HhCCEEEEEEC-CEEEEeCCHHHHh
Confidence 999999999999999999999999999999999875 99999999999864 36999999976 6899999987763
No 152
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-39 Score=350.11 Aligned_cols=219 Identities=23% Similarity=0.346 Sum_probs=183.6
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEecCh-----h
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC---IMSGTILVNGKVASI-----Q 583 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~~~-----~ 583 (1118)
.++++||++.|+ ++.+|+|+|++|++||+++|+|+|||||||||++|+|++++. +++|+|.++|+++.. .
T Consensus 4 ~l~~~nl~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 4 KVKLEQLNVHFG--KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred EEEEEEEEEEeC--CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 478999999995 367999999999999999999999999999999999998521 358999999987631 2
Q ss_pred hhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHHH
Q 048718 584 SYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH----IRDSLVGTVEKRGISGGQR 659 (1118)
Q Consensus 584 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~----~~dt~vg~~~~rgLSGGER 659 (1118)
.+++.++|+||++.+++.+||+||+.++.... ......+...+++++++.+||.+ ..++.++ .||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-----~LS~G~~ 154 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVALWDEVKDRLKSNAM-----ELSGGQQ 154 (252)
T ss_pred HhhccEEEEecCCCCCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcC-----cCCHHHH
Confidence 45778999999999999999999998765432 11123333456788999999864 3344444 4999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecCh
Q 048718 660 KRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPV 739 (1118)
Q Consensus 660 QRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~ 739 (1118)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||+++. +.+.+|++++|.+ |++++.|+.
T Consensus 155 qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~-~~~~~d~i~~l~~-G~i~~~~~~ 231 (252)
T PRK14256 155 QRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQQ-AARVSDYTAFFYM-GDLVECGET 231 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHHH-HHhhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999875 6899999999875 4578999999975 689999998
Q ss_pred hhH
Q 048718 740 KKV 742 (1118)
Q Consensus 740 ~~l 742 (1118)
+++
T Consensus 232 ~~~ 234 (252)
T PRK14256 232 KKI 234 (252)
T ss_pred HHH
Confidence 765
No 153
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.8e-39 Score=347.10 Aligned_cols=216 Identities=30% Similarity=0.422 Sum_probs=187.3
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-hhhcCeEEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-QSYKRIIGF 591 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Igy 591 (1118)
|.++||++.|. .+.+|+|+|++|++||+++|+||||||||||+++|+|+++ +.+|+|.++|+++.. ...++.++|
T Consensus 1 l~~~~l~~~~~--~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~--~~~G~i~~~g~~~~~~~~~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYG--GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDITNLPPHKRPVNT 76 (232)
T ss_pred CEEEeEEEEeC--CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChhhcceEE
Confidence 36899999994 3579999999999999999999999999999999999998 689999999987643 223568999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 048718 592 VPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVME 671 (1118)
Q Consensus 592 V~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~ 671 (1118)
++|++.+++.+||.||+.+....+ ........+.++++++.+||.+..++.+.+ |||||||||+|||||+.+
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----lS~G~~qrl~laral~~~ 148 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRKPSQ-----LSGGQQQRVAIARALVNE 148 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHHhcC
Confidence 999999998999999999875432 122333445678999999999888887765 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 672 PSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 672 P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
|+++||||||+|||+.++..+.+.|++++++ |.|||+++|++.+ +.+.+|++++|.+ |++++.|+.+++
T Consensus 149 p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~-~~~~~d~i~~l~~-G~~~~~~~~~~~ 218 (232)
T cd03300 149 PKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEE-ALTMSDRIAVMNK-GKIQQIGTPEEI 218 (232)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCEEEEEEC-CEEEecCCHHHH
Confidence 9999999999999999999999999999864 8999999999875 5678999999976 689999987665
No 154
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=4.2e-40 Score=402.41 Aligned_cols=225 Identities=27% Similarity=0.466 Sum_probs=189.3
Q ss_pred ceEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEec---Chhhhc
Q 048718 510 TIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVA---SIQSYK 586 (1118)
Q Consensus 510 ~~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~---~~~~~r 586 (1118)
...++++||+|.|...+..+|+|+|++|++||.+||+|+||||||||+|+|+|++. |.+|+|++||.++ +...+|
T Consensus 469 ~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~~dg~dl~~i~~~~lR 546 (709)
T COG2274 469 QGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRILLDGVDLNDIDLASLR 546 (709)
T ss_pred CceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEeHHhcCHHHHH
Confidence 35799999999997655679999999999999999999999999999999999998 7899999999986 446789
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 048718 587 RIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGL 666 (1118)
Q Consensus 587 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIAr 666 (1118)
+.||||+||+.+|.. ||+||+.++......+++..+.+.+.+++.+. .+...++|.+|+ ...+||||||||++|||
T Consensus 547 ~~ig~V~Q~~~Lf~g-SI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~--~lP~gy~t~v~E-~G~~LSGGQrQrlalAR 622 (709)
T COG2274 547 RQVGYVLQDPFLFSG-SIRENIALGNPEATDEEIIEAAQLAGAHEFIE--NLPMGYDTPVGE-GGANLSGGQRQRLALAR 622 (709)
T ss_pred hheeEEcccchhhcC-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHH--hccccccccccc-CCCCCCHHHHHHHHHHH
Confidence 999999999999965 99999998743211111111112223444444 446678999986 66789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHHH
Q 048718 667 EMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVEE 744 (1118)
Q Consensus 667 ALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~~ 744 (1118)
||+++|+||+||||||+||+.+...|.+.|.++. .|+|+|+++|+++ ..+.+|+++||++ |+++++|+-+++.+
T Consensus 623 aLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrIiVl~~-Gkiv~~gs~~ell~ 696 (709)
T COG2274 623 ALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRIIVLDQ-GKIVEQGSHEELLA 696 (709)
T ss_pred HhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEEEEccC-CceeccCCHHHHHH
Confidence 9999999999999999999999999999998875 4799999999987 4589999999975 69999999998864
No 155
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-39 Score=369.34 Aligned_cols=208 Identities=30% Similarity=0.509 Sum_probs=181.6
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-------hhh
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-------QSY 585 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-------~~~ 585 (1118)
|++ ||+++|. ++. + |+||+|++||+++|+|||||||||||++|+|+++ +++|+|.++|+++.. ...
T Consensus 2 l~~-~l~k~~~--~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~~~~~~~ 74 (352)
T PRK11144 2 LEL-NFKQQLG--DLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKGICLPPE 74 (352)
T ss_pred eEE-EEEEEeC--CEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccchh
Confidence 456 8999994 233 3 8999999999999999999999999999999998 689999999987532 234
Q ss_pred cCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 048718 586 KRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVG 665 (1118)
Q Consensus 586 r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIA 665 (1118)
++.++|++|++.+|+++||+||+.|+... ...++++++++.+||.+..++.+++ |||||||||+||
T Consensus 75 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~---------~~~~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qRvala 140 (352)
T PRK11144 75 KRRIGYVFQDARLFPHYKVRGNLRYGMAK---------SMVAQFDKIVALLGIEPLLDRYPGS-----LSGGEKQRVAIG 140 (352)
T ss_pred hCCEEEEcCCcccCCCCcHHHHHHhhhhh---------hhHHHHHHHHHHcCCchhhhCCccc-----CCHHHHHHHHHH
Confidence 67899999999999999999999987431 1234588999999999888888766 999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 666 LEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 666 rALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
|||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++||++++ +.+++|++++|.+ |+++..|+++++.
T Consensus 141 raL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~-~~~~~d~i~~l~~-G~i~~~g~~~~i~ 217 (352)
T PRK11144 141 RALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDE-ILRLADRVVVLEQ-GKVKAFGPLEEVW 217 (352)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH-HHHhCCEEEEEeC-CEEEEecCHHHHH
Confidence 9999999999999999999999999999999999865 8999999999875 5689999999976 6999999998763
No 156
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=5.4e-39 Score=347.99 Aligned_cols=217 Identities=30% Similarity=0.454 Sum_probs=187.5
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-hhhcCeEEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-QSYKRIIGF 591 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Igy 591 (1118)
++++|+++.|. ++++|+|+|++|.+||+++|+||||||||||+++|+|+++ +.+|+|.++|.++.. ...++.++|
T Consensus 1 i~i~~l~~~~~--~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~~~~~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFG--SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATRVHARDRKIGF 76 (237)
T ss_pred CEEEEEEEEEC--CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChhhcCEEE
Confidence 46899999995 4679999999999999999999999999999999999987 689999999987643 234567999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 048718 592 VPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVME 671 (1118)
Q Consensus 592 V~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~ 671 (1118)
++|++.+++.+|+.||+.+....+ ........+.++++++.++|.+..++.+++ |||||+||++||++|+.+
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----lS~G~~qrl~laral~~~ 148 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYPNQ-----LSGGQRQRVALARALAVE 148 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChhh-----CCHHHHHHHHHHHHHhcC
Confidence 999999999999999999875432 122333345678999999998877877765 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 672 PSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 672 P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
|++++|||||+|||+.++..+.+.|++++.+ |+|||++||+++. +.+.+|++++|.+ |++++.|+.+++.
T Consensus 149 p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~-~~~~~d~i~~l~~-g~i~~~~~~~~~~ 219 (237)
T TIGR00968 149 PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEE-AMEVADRIVVMSN-GKIEQIGSPDEVY 219 (237)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHhhcCEEEEEEC-CEEEEecCHHHHH
Confidence 9999999999999999999999999998865 8999999999875 4678999999976 6899999987663
No 157
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-39 Score=387.10 Aligned_cols=222 Identities=23% Similarity=0.353 Sum_probs=190.2
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChh----hhcC
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQ----SYKR 587 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~----~~r~ 587 (1118)
.++++||+++|. ++.+|+||||+|++||+++|+||||||||||||+|+|++++.+++|+|.++|.++... ..++
T Consensus 5 ~l~~~nl~~~~~--~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFG--GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeC--CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 488999999994 4679999999999999999999999999999999999997323799999999876421 2356
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
.+|||+|++.+++.+||+||+.++...+........+...+++++++.+||.+..++.+++ |||||||||+||+|
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGqkqrv~la~a 157 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGN-----LGLGQQQLVEIAKA 157 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhh-----CCHHHHHHHHHHHH
Confidence 7999999999999999999999875432111122333445688999999998888888876 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 668 MVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 668 Ll~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
|+.+|+||||||||+|||+.++..+.+.|++++++|.|||++||+++. +.+.+|++++|.+ |++++.|+++++
T Consensus 158 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~-~~~~~d~v~~l~~-G~i~~~~~~~~~ 230 (506)
T PRK13549 158 LNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNE-VKAISDTICVIRD-GRHIGTRPAAGM 230 (506)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHH-HHHhcCEEEEEEC-CEEeeecccccC
Confidence 999999999999999999999999999999998779999999999875 4578999999976 689999988764
No 158
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=2.5e-39 Score=342.03 Aligned_cols=199 Identities=28% Similarity=0.428 Sum_probs=172.2
Q ss_pred EEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---h----hhhcC
Q 048718 515 FKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---I----QSYKR 587 (1118)
Q Consensus 515 ~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~----~~~r~ 587 (1118)
++||++.|. ++++|+|+||+|++||+++|+|||||||||||++|+|+++ +++|+|.++|.++. . ...++
T Consensus 1 i~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~ 76 (206)
T TIGR03608 1 LKNISKKFG--DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRRE 76 (206)
T ss_pred CcceEEEEC--CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHh
Confidence 367899984 4679999999999999999999999999999999999997 68999999998742 1 12466
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
.++|++|++.+++.+||+||+.+..... .....+..+.++++++.+||.+..++.+.+ ||||||||++||+|
T Consensus 77 ~i~~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----lS~G~~qr~~lara 148 (206)
T TIGR03608 77 KLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKIYE-----LSGGEQQRVALARA 148 (206)
T ss_pred CeeEEecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCChhh-----CCHHHHHHHHHHHH
Confidence 8999999999999999999999875432 223334455788999999998888887765 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEE
Q 048718 668 MVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILL 727 (1118)
Q Consensus 668 Ll~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL 727 (1118)
|+.+|++|||||||+|||+.++..+.+.|+++.++|.|+|+++|++.. .+.+|++++|
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~--~~~~d~i~~l 206 (206)
T TIGR03608 149 ILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEV--AKQADRVIEL 206 (206)
T ss_pred HHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--HhhcCEEEeC
Confidence 999999999999999999999999999999988779999999999874 3679988775
No 159
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=4.7e-39 Score=354.67 Aligned_cols=220 Identities=20% Similarity=0.343 Sum_probs=185.5
Q ss_pred EEEEEeEEEEEcCC-------cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh--
Q 048718 512 EVAFKDLTITLKGK-------NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-- 582 (1118)
Q Consensus 512 ~l~~knLs~~~~~~-------~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-- 582 (1118)
.|+++||+++|.+. .+++|+|+||+|++||+++|+|||||||||||++|+|+++ |++|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPLHFGD 81 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCc
Confidence 48899999999521 2469999999999999999999999999999999999998 689999999987642
Q ss_pred -hhhcCeEEEEcCCCC--CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHH
Q 048718 583 -QSYKRIIGFVPQDDI--VHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-HIRDSLVGTVEKRGISGGQ 658 (1118)
Q Consensus 583 -~~~r~~IgyV~Qd~~--l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-~~~dt~vg~~~~rgLSGGE 658 (1118)
...++.++|++|++. +++.+||.+++.+...... .....+..+.++++++.+||. +..++.+.+ |||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LS~G~ 154 (267)
T PRK15112 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYPHM-----LAPGQ 154 (267)
T ss_pred hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCchh-----cCHHH
Confidence 223457999999975 5678899999988754321 123334445688999999994 566666655 99999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEec
Q 048718 659 RKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHG 737 (1118)
Q Consensus 659 RQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G 737 (1118)
||||+||+||+.+|+||||||||+|||+.++..+.+.|++++++ |.|||+++|+++. +.+++|++++|.+ |++++.|
T Consensus 155 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~-~~~~~d~i~~l~~-G~i~~~~ 232 (267)
T PRK15112 155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGM-MKHISDQVLVMHQ-GEVVERG 232 (267)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHH-HHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999999999864 8999999999875 5578999999975 6899999
Q ss_pred ChhhH
Q 048718 738 PVKKV 742 (1118)
Q Consensus 738 ~~~~l 742 (1118)
+.+++
T Consensus 233 ~~~~~ 237 (267)
T PRK15112 233 STADV 237 (267)
T ss_pred CHHHH
Confidence 87765
No 160
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.4e-40 Score=356.69 Aligned_cols=203 Identities=26% Similarity=0.374 Sum_probs=186.6
Q ss_pred eeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---h---hhh-cCeEEEEcCCCCCCCC
Q 048718 529 LMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---I---QSY-KRIIGFVPQDDIVHGN 601 (1118)
Q Consensus 529 IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~---~~~-r~~IgyV~Qd~~l~~~ 601 (1118)
-++|+||+|+.||++.|||-||||||||+++|.++++ |++|+|+++|.++. . ..+ |+++++|||...|+|+
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPh 120 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPH 120 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccc
Confidence 4799999999999999999999999999999999998 79999999998753 2 223 4679999999999999
Q ss_pred CCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 048718 602 LTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPT 681 (1118)
Q Consensus 602 LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPT 681 (1118)
.||.||..|++..+ +++++++++++.++|+.+||....++++.+ |||||||||.|||||+.+|+||++|||+
T Consensus 121 rtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~yp~e-----LSGGMqQRVGLARAla~~~~IlLMDEaF 192 (386)
T COG4175 121 RTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYPNE-----LSGGMQQRVGLARALANDPDILLMDEAF 192 (386)
T ss_pred hhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcCccc-----ccchHHHHHHHHHHHccCCCEEEecCch
Confidence 99999999998764 688999999999999999999999998876 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 682 SGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 682 sGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
|+|||--+.++.+.|.++.++ ++||+++|||++++ +++.|+|.+|. +|++|..|+++|+.
T Consensus 193 SALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEA-lriG~rIaimk-dG~ivQ~Gtp~eIl 253 (386)
T COG4175 193 SALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEA-LRIGDRIAIMK-DGEIVQVGTPEEIL 253 (386)
T ss_pred hhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHH-HhccceEEEec-CCeEEEeCCHHHHH
Confidence 999999999999999888754 99999999999976 58999999995 57999999999974
No 161
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=4.1e-39 Score=368.94 Aligned_cols=209 Identities=32% Similarity=0.505 Sum_probs=181.9
Q ss_pred eEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-------hhhcCeE
Q 048718 517 DLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-------QSYKRII 589 (1118)
Q Consensus 517 nLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-------~~~r~~I 589 (1118)
||+++|. ++. + |+||+|++||+++|+|||||||||||++|+|+++ +++|+|.++|+++.. ...++.+
T Consensus 4 ~l~~~~~--~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~~i 77 (354)
T TIGR02142 4 RFSKRLG--DFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLPPEKRRI 77 (354)
T ss_pred EEEEEEC--CEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccchhhCCe
Confidence 6888884 334 4 9999999999999999999999999999999998 689999999987632 1346789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 048718 590 GFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMV 669 (1118)
Q Consensus 590 gyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl 669 (1118)
+|++|++.+|+++||+||+.|+.... ...+...+++++++.+||.+..++.+.+ |||||||||+|||||+
T Consensus 78 ~~v~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 78 GYVFQEARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALL 147 (354)
T ss_pred EEEecCCccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCChhh-----CCHHHHHHHHHHHHHH
Confidence 99999999999999999999876421 1223345688999999999888888766 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 670 MEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 670 ~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++++ +..++|++++|.+ |++++.|+++++.
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~-~~~~~d~i~~l~~-G~i~~~g~~~~~~ 220 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQE-VLRLADRVVVLED-GRVAAAGPIAEVW 220 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEeC-CEEEEECCHHHHh
Confidence 999999999999999999999999999999865 8999999999875 5678999999976 6899999987763
No 162
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.3e-39 Score=351.97 Aligned_cols=214 Identities=24% Similarity=0.462 Sum_probs=173.9
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcCeE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKRII 589 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~I 589 (1118)
++++||++.|..+++.+|+|+||++++||+++|+|||||||||||++|+|+++ +++|+|.++|.++.. ..+++.+
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i 78 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLALADPAWLRRQV 78 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehHhcCHHHHhhcE
Confidence 46899999995434679999999999999999999999999999999999998 689999999987532 3456789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHH-----HHHHHHHHHHc--CCCccccccccCccCCCCCHHHHHHH
Q 048718 590 GFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEK-----VLVVERVIESL--GLQHIRDSLVGTVEKRGISGGQRKRV 662 (1118)
Q Consensus 590 gyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~-----~~~v~~lL~~l--gL~~~~dt~vg~~~~rgLSGGERQRV 662 (1118)
+|++|++.+++ .||.|||.+.... ...... ...+.++++.+ ++.+..+..+. .|||||||||
T Consensus 79 ~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-----~LSgG~~qrv 147 (237)
T cd03252 79 GVVLQENVLFN-RSIRDNIALADPG-----MSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGA-----GLSGGQRQRI 147 (237)
T ss_pred EEEcCCchhcc-chHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCC-----cCCHHHHHHH
Confidence 99999998775 6999999875321 111111 11223445554 45544555554 4999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 663 NVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 663 sIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
+|||||+.+|++|||||||+|||+.++..+.+.|++++ +|+|||++||+++. + ..+|++++|.+ |++++.|+++++
T Consensus 148 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~-~-~~~d~v~~l~~-G~i~~~~~~~~~ 223 (237)
T cd03252 148 AIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLST-V-KNADRIIVMEK-GRIVEQGSHDEL 223 (237)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEEEcCHHHH
Confidence 99999999999999999999999999999999999986 48999999999975 3 46999999976 689999998775
Q ss_pred H
Q 048718 743 E 743 (1118)
Q Consensus 743 ~ 743 (1118)
.
T Consensus 224 ~ 224 (237)
T cd03252 224 L 224 (237)
T ss_pred H
Confidence 3
No 163
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-39 Score=347.02 Aligned_cols=215 Identities=27% Similarity=0.414 Sum_probs=182.9
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-hhhcCeEEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-QSYKRIIGF 591 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Igy 591 (1118)
++++||++.|.. + ..||||+|++||+++|+|||||||||||++|+|+++ +.+|+|.++|+++.. ...++.++|
T Consensus 2 l~~~~l~~~~~~--~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHH--L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHTTTPPSRRPVSM 75 (232)
T ss_pred eEEEEEEEEECC--c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecCcCChhhccEEE
Confidence 679999999952 2 249999999999999999999999999999999998 689999999987642 123467999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 048718 592 VPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVME 671 (1118)
Q Consensus 592 V~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~ 671 (1118)
++|++.+++.+||.||+.+..... .... .....++.++++.+||.+..++.+.+ |||||||||+||+||+.+
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~--~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~ 147 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPG--LKLN-AAQREKLHAIARQMGIEDLLARLPGQ-----LSGGQRQRVALARCLVRE 147 (232)
T ss_pred EecccccccCCcHHHHHhcccccc--cCCC-HHHHHHHHHHHHHcCcHHHHhCCccc-----CCHHHHHHHHHHHHHhcC
Confidence 999999999999999998763211 1111 22345688999999998888888765 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 672 PSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 672 P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
|++|||||||+|||+.++..+.+.|++++++ |.|||+++|+++. +.+.+|++++|.+ |++++.|+.+++.
T Consensus 148 p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~-g~i~~~g~~~~~~ 218 (232)
T PRK10771 148 QPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLED-AARIAPRSLVVAD-GRIAWDGPTDELL 218 (232)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH-HHHhCCEEEEEEC-CEEEEeCCHHHHH
Confidence 9999999999999999999999999998764 8999999999875 4578999999976 6899999887653
No 164
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-39 Score=353.86 Aligned_cols=219 Identities=25% Similarity=0.357 Sum_probs=182.9
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEecC-----h
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC---IMSGTILVNGKVAS-----I 582 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~~-----~ 582 (1118)
..++++||++.|. ++.+|+|+||+|++||+++|+|||||||||||++|+|++++. +++|+|.++|.++. .
T Consensus 12 ~~l~i~nl~~~~~--~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 12 IIISLQNVTISYG--TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred ceEEEEeEEEEEC--CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 4689999999994 467999999999999999999999999999999999997621 47999999998753 2
Q ss_pred hhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccCCCCCHHH
Q 048718 583 QSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ----HIRDSLVGTVEKRGISGGQ 658 (1118)
Q Consensus 583 ~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~----~~~dt~vg~~~~rgLSGGE 658 (1118)
..+++.++|++|++.+++ .||+|||.+....+ .... ...+.++++++.+++. +..++.+. .|||||
T Consensus 90 ~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~-----~LS~G~ 159 (269)
T PRK14259 90 VEVRRRIGMVFQQPNPFP-KSIYENIAFGARIN---GYTG-DMDELVERSLRKAAVWDECKDKLNESGY-----SLSGGQ 159 (269)
T ss_pred HHHhhceEEEccCCccch-hhHHHHHhhhhhhc---CCcH-HHHHHHHHHHHHhCCcchhhhhhCCCcc-----cCCHHH
Confidence 345678999999998887 49999999876432 1122 2234567888888874 33455554 499999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEec---------
Q 048718 659 RKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAK--------- 729 (1118)
Q Consensus 659 RQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~--------- 729 (1118)
||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++. +.+++|++++|.+
T Consensus 160 ~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~-~~~~~d~i~~l~~~~~~~~~~g 237 (269)
T PRK14259 160 QQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQQ-AVRVSDMTAFFNAEEVEGGSGG 237 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-HHHhcCEEEEEecccccccccc
Confidence 9999999999999999999999999999999999999999854 7899999999875 5689999999985
Q ss_pred -CcEEEEecChhhHH
Q 048718 730 -GGVIVYHGPVKKVE 743 (1118)
Q Consensus 730 -GG~iv~~G~~~~l~ 743 (1118)
.|++++.|+++++.
T Consensus 238 ~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 238 KVGYLVEFNETKKIF 252 (269)
T ss_pred ccceEEEeCCHHHHH
Confidence 26799999998774
No 165
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-39 Score=348.32 Aligned_cols=218 Identities=24% Similarity=0.326 Sum_probs=181.0
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC---ceeEEEECCEecCh-----h
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCI---MSGTILVNGKVASI-----Q 583 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~---~sG~I~inG~~~~~-----~ 583 (1118)
.++++||++.|. ++.+|+|+||+|++||+++|+|||||||||||++|+|+.+..| ++|+|.++|+++.. .
T Consensus 5 ~l~~~~l~~~~~--~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYN--KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEEC--CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 478999999994 4579999999999999999999999999999999999853113 58999999987631 2
Q ss_pred hhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHHH
Q 048718 584 SYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH----IRDSLVGTVEKRGISGGQR 659 (1118)
Q Consensus 584 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~----~~dt~vg~~~~rgLSGGER 659 (1118)
.+++.++||+|++.+++ +||+||+.++.... . ..........+.++++.+++.+ ..++.++ .||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-----~LS~G~~ 154 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFP-MSIYENVVYGLRLK-G-IKDKQVLDEAVEKSLKGASIWDEVKDRLHDSAL-----GLSGGQQ 154 (252)
T ss_pred hhhhcEEEEecCCccCc-CcHHHHHHHHHHHc-C-CCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcc-----cCCHHHH
Confidence 35678999999998887 89999999875432 1 1122233456788899998743 3455554 4999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecCh
Q 048718 660 KRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPV 739 (1118)
Q Consensus 660 QRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~ 739 (1118)
|||+||+||+.+|+||||||||+|||+.++..+.+.|+++.+ ++|||++||+++. +.+.+|++++|.+ |++++.|+.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~-~~~~~d~i~~l~~-G~i~~~g~~ 231 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQ-ASRISDRTGFFLD-GDLIEYNDT 231 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHHH-HHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999865 6899999999874 5678999999976 689999998
Q ss_pred hhH
Q 048718 740 KKV 742 (1118)
Q Consensus 740 ~~l 742 (1118)
+++
T Consensus 232 ~~~ 234 (252)
T PRK14239 232 KQM 234 (252)
T ss_pred HHH
Confidence 776
No 166
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-38 Score=347.41 Aligned_cols=218 Identities=24% Similarity=0.379 Sum_probs=182.0
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC---ceeEEEECCEecCh-----h
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCI---MSGTILVNGKVASI-----Q 583 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~---~sG~I~inG~~~~~-----~ 583 (1118)
.+.++||++.|. ++++|+|+||+|++||+++|+|||||||||||++|+|+.++.+ ++|+|.++|+++.. .
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14240 3 KISVKDLDLFYG--DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN 80 (250)
T ss_pred eEEEEEEEEEEC--CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 478999999995 3579999999999999999999999999999999999875222 68999999987642 2
Q ss_pred hhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccCCCCCHHHH
Q 048718 584 SYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ----HIRDSLVGTVEKRGISGGQR 659 (1118)
Q Consensus 584 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~----~~~dt~vg~~~~rgLSGGER 659 (1118)
.+++.++|++|++.+++ +||+||+.++...+. .....+..+.++++++.+++. +..++.++ .||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~-----~LS~G~~ 152 (250)
T PRK14240 81 QLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKSAL-----GLSGGQQ 152 (250)
T ss_pred HHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCC-----CCCHHHH
Confidence 35678999999998887 899999998754321 112333445678889998874 33455554 4999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecCh
Q 048718 660 KRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPV 739 (1118)
Q Consensus 660 QRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~ 739 (1118)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||++||+++. +.+.+|++++|.+ |++++.|+.
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~-~~~~~d~v~~l~~-G~i~~~~~~ 229 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQQ-ASRISDKTAFFLN-GEIVEFGDT 229 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHHH-HHhhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999999999999999985 47899999999874 5678999999976 689999988
Q ss_pred hhH
Q 048718 740 KKV 742 (1118)
Q Consensus 740 ~~l 742 (1118)
+++
T Consensus 230 ~~~ 232 (250)
T PRK14240 230 VDL 232 (250)
T ss_pred HHH
Confidence 765
No 167
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=5.4e-39 Score=342.25 Aligned_cols=210 Identities=28% Similarity=0.397 Sum_probs=179.5
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-hhhcCeEEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-QSYKRIIGF 591 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Igy 591 (1118)
++++||++.|. .+++|+|++|++||+++|+||||||||||+++|+|+.+ +++|+|.++|+++.. ..+++.++|
T Consensus 1 ~~~~~l~~~~~----~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYE----HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTGLAPYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeC----CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccCChhccceEE
Confidence 36899999994 25789999999999999999999999999999999998 689999999987642 235678999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 048718 592 VPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVME 671 (1118)
Q Consensus 592 V~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~ 671 (1118)
++|++.+++.+|+.||+.+...... . .....+.+++++++.+||.+..++.+.+ |||||||||+||++|+.+
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~laral~~~ 146 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLPEQ-----LSGGQRQRVALARCLVRP 146 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCccc-----CCHHHHHHHHHHHHHhcC
Confidence 9999999999999999987643211 1 1112344678899999998888887765 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecC
Q 048718 672 PSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGP 738 (1118)
Q Consensus 672 P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~ 738 (1118)
|+|++|||||+|||+.++..+.+.|+++.++ |.|||+++|+++. +.+.+|++++|.+ |++++.|.
T Consensus 147 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~-~~~~~d~v~~l~~-g~i~~~~~ 212 (213)
T TIGR01277 147 NPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSD-ARAIASQIAVVSQ-GKIKVVSD 212 (213)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHhhcCeEEEEEC-CeEEEecC
Confidence 9999999999999999999999999998764 8999999999875 4578999999975 68888774
No 168
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-38 Score=350.02 Aligned_cols=219 Identities=22% Similarity=0.345 Sum_probs=183.1
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEecC-----h
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC---IMSGTILVNGKVAS-----I 582 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~~-----~ 582 (1118)
..++++||++.|. ++.+|+|+||+|++||+++|+|||||||||||++|+|++++. +++|+|.++|+++. .
T Consensus 11 ~~l~i~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 11 EVYQINGMNLWYG--QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred ceEEEeeEEEEEC--CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 3589999999994 357999999999999999999999999999999999998621 25899999998763 1
Q ss_pred hhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHH
Q 048718 583 QSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH----IRDSLVGTVEKRGISGGQ 658 (1118)
Q Consensus 583 ~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~----~~dt~vg~~~~rgLSGGE 658 (1118)
..+++.++|++|++.+++. ||+||+.+..... ....+.+...+++++++.+||.+ ..++.++ .|||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~-----~LS~Gq 160 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIH--GTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQAL-----SLSGGQ 160 (259)
T ss_pred HHHhhceEEEecCCccccc-CHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcc-----cCCHHH
Confidence 2456789999999988875 9999998875432 11123344456788999999853 3455554 499999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecC
Q 048718 659 RKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGP 738 (1118)
Q Consensus 659 RQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~ 738 (1118)
||||+|||+|+.+|+||||||||+|||+.++..+.+.|+++.+ ++|+|++||+++. +.+.+|++++|.+ |+++..|+
T Consensus 161 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~-~~~~~d~i~~l~~-G~i~~~g~ 237 (259)
T PRK14274 161 QQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQ-AARVSDQTAFFYM-GELVECND 237 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHH-HHHhCCEEEEEEC-CEEEEECC
Confidence 9999999999999999999999999999999999999999864 7899999999875 5678999999975 69999999
Q ss_pred hhhH
Q 048718 739 VKKV 742 (1118)
Q Consensus 739 ~~~l 742 (1118)
++++
T Consensus 238 ~~~~ 241 (259)
T PRK14274 238 TNKM 241 (259)
T ss_pred HHHH
Confidence 8875
No 169
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.8e-39 Score=345.91 Aligned_cols=215 Identities=29% Similarity=0.482 Sum_probs=185.9
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-hhhcCeEEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-QSYKRIIGF 591 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Igy 591 (1118)
|.++|+++.|.+ ++|+|+|++|++||+++|+||||||||||+++|+|+++ +++|+|.++|.++.. ...++.++|
T Consensus 1 l~~~~l~~~~~~---~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPEKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC---ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChhHcCEEE
Confidence 468899999952 38999999999999999999999999999999999988 689999999987643 223568999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 048718 592 VPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVME 671 (1118)
Q Consensus 592 V~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~ 671 (1118)
++|++.+++.+||.||+.++.... .....+..+.+.++++.+||.+..++.+.+ |||||||||+||+||+.+
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~laral~~~ 147 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKPET-----LSGGEQQRVAIARALVVN 147 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCccc-----CCHHHHHHHHHHHHHHcC
Confidence 999999999999999999875332 223344445678899999998888888765 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 672 PSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 672 P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
|++++|||||+|||+.++..+.+.|++++.+ |.|+|++||++.. +.+.+|++++|.+ |++++.|+.+++
T Consensus 148 p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~-~~~~~d~i~~l~~-G~i~~~~~~~~~ 217 (235)
T cd03299 148 PKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEE-AWALADKVAIMLN-GKLIQVGKPEEV 217 (235)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEEC-CEEEEecCHHHH
Confidence 9999999999999999999999999998765 9999999999875 4578999999976 689999987765
No 170
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-38 Score=347.89 Aligned_cols=219 Identities=23% Similarity=0.323 Sum_probs=183.2
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEecCh-----
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC---IMSGTILVNGKVASI----- 582 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~~~----- 582 (1118)
+.++++||++.|. ++.+|+|+|++|++||+++|+|+|||||||||++|+|+.++. +++|+|.++|.++..
T Consensus 3 ~~l~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 3 IKMESKNLNLWYG--EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred cEEEEEEeEEEEC--CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 4578999999994 467999999999999999999999999999999999998632 268999999987632
Q ss_pred hhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccCCCCCHHH
Q 048718 583 QSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ----HIRDSLVGTVEKRGISGGQ 658 (1118)
Q Consensus 583 ~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~----~~~dt~vg~~~~rgLSGGE 658 (1118)
...++.++|++|++.+++ +||+||+.|...... .....+...+++++++.+||. +..++.++ .|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-----~LS~G~ 152 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKKSAL-----KLSGGQ 152 (251)
T ss_pred HHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcc-----cCCHHH
Confidence 234678999999999887 899999998754321 112233445678899999884 33455544 499999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecC
Q 048718 659 RKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGP 738 (1118)
Q Consensus 659 RQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~ 738 (1118)
||||+||++|+.+|+||||||||+|||+.++..+.+.|+++.+ +.|||++||+++. +.+.+|++++|.+ |++++.|+
T Consensus 153 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~-~~~~~d~v~~l~~-G~i~~~~~ 229 (251)
T PRK14270 153 QQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQ-ASRVSDYTAFFLM-GDLIEFNK 229 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHH-HHHhcCEEEEEEC-CeEEEeCC
Confidence 9999999999999999999999999999999999999999876 5899999999874 5678999999976 68999999
Q ss_pred hhhH
Q 048718 739 VKKV 742 (1118)
Q Consensus 739 ~~~l 742 (1118)
.+++
T Consensus 230 ~~~~ 233 (251)
T PRK14270 230 TEKI 233 (251)
T ss_pred HHHH
Confidence 8876
No 171
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-39 Score=355.22 Aligned_cols=219 Identities=27% Similarity=0.433 Sum_probs=184.1
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc--------eeEEEECCEecCh--
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIM--------SGTILVNGKVASI-- 582 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~--------sG~I~inG~~~~~-- 582 (1118)
|+++||+++|. ++.+|+|+||+|++||+++|+||||||||||||+|+|+++ +. +|+|.++|.++..
T Consensus 2 l~~~nl~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~--p~~~~~~~~~~G~i~~~g~~~~~~~ 77 (272)
T PRK13547 2 LTADHLHVARR--HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT--GGGAPRGARVTGDVTLNGEPLAAID 77 (272)
T ss_pred eEEEEEEEEEC--CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CcccccccCCceEEEECCEEcccCC
Confidence 67999999994 4679999999999999999999999999999999999997 44 8999999987632
Q ss_pred -hhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 048718 583 -QSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLS-ADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 583 -~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~-~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQ 660 (1118)
..+++.++|++|++.+++.+||+||+.++...... ......+....++++++.+||.+..++.+.+ |||||||
T Consensus 78 ~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~q 152 (272)
T PRK13547 78 APRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTT-----LSGGELA 152 (272)
T ss_pred HHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCccc-----CCHHHHH
Confidence 34566799999998766679999999886421100 0111122345678899999998877777765 9999999
Q ss_pred HHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecC
Q 048718 661 RVNVGLEMV---------MEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKG 730 (1118)
Q Consensus 661 RVsIArALl---------~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~G 730 (1118)
||+||++|+ .+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|+++. +.+++|++++|.+
T Consensus 153 rv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~-~~~~~d~i~~l~~- 230 (272)
T PRK13547 153 RVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNL-AARHADRIAMLAD- 230 (272)
T ss_pred HHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH-HHHhCCEEEEEEC-
Confidence 999999999 599999999999999999999999999999875 8999999999875 5578999999976
Q ss_pred cEEEEecChhhH
Q 048718 731 GVIVYHGPVKKV 742 (1118)
Q Consensus 731 G~iv~~G~~~~l 742 (1118)
|++++.|+++++
T Consensus 231 G~i~~~g~~~~~ 242 (272)
T PRK13547 231 GAIVAHGAPADV 242 (272)
T ss_pred CeEEEecCHHHH
Confidence 689999998765
No 172
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-38 Score=350.08 Aligned_cols=220 Identities=23% Similarity=0.328 Sum_probs=184.7
Q ss_pred ceEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCceeEEEECCEecCh----
Q 048718 510 TIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPG---CIMSGTILVNGKVASI---- 582 (1118)
Q Consensus 510 ~~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~---~~~sG~I~inG~~~~~---- 582 (1118)
...++++||++.|. ++++|+||||+|.+||+++|+|||||||||||++|+|++++ .+++|+|.++|.++..
T Consensus 18 ~~~l~~~nl~~~~~--~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 18 EIALSTKDLHVYYG--KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred CeEEEEeeEEEEEC--CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 34689999999994 46899999999999999999999999999999999999863 1479999999987632
Q ss_pred -hhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHH
Q 048718 583 -QSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH----IRDSLVGTVEKRGISGG 657 (1118)
Q Consensus 583 -~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~----~~dt~vg~~~~rgLSGG 657 (1118)
..+++.|+|++|++.+++ .||+||+.++.... ....+......+.++++.++|.+ ..++.+ +.||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~-----~~LS~G 167 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDLHKSA-----LTLSGG 167 (267)
T ss_pred hHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCc-----ccCCHH
Confidence 235678999999998887 59999999875421 11223344456788999999853 344444 459999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEec
Q 048718 658 QRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHG 737 (1118)
Q Consensus 658 ERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G 737 (1118)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|+++. ++.|||++||+++. +.+++|++++|.+ |++++.|
T Consensus 168 ~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~-~~~~~d~i~~l~~-G~i~~~g 244 (267)
T PRK14237 168 QQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQQ-AARASDYTAFFYL-GDLIEYD 244 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHH-HHHhcCEEEEEEC-CEEEEeC
Confidence 9999999999999999999999999999999999999999985 47899999999875 5688999999976 6999999
Q ss_pred ChhhH
Q 048718 738 PVKKV 742 (1118)
Q Consensus 738 ~~~~l 742 (1118)
+++++
T Consensus 245 ~~~~~ 249 (267)
T PRK14237 245 KTRNI 249 (267)
T ss_pred CHHHH
Confidence 98776
No 173
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.5e-39 Score=354.65 Aligned_cols=221 Identities=26% Similarity=0.417 Sum_probs=188.5
Q ss_pred EEEEeEEEEEcCC--cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCceeEEEECCEec---Chh-
Q 048718 513 VAFKDLTITLKGK--NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPG---CIMSGTILVNGKVA---SIQ- 583 (1118)
Q Consensus 513 l~~knLs~~~~~~--~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~---~~~sG~I~inG~~~---~~~- 583 (1118)
++++||++.|... ..++++||||+|++||++||+|.|||||||+.++|+|+++. ...+|+|.++|+++ +.+
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 5789999999643 25799999999999999999999999999999999999972 23689999999864 222
Q ss_pred --hhc-CeEEEEcCCC--CCCCCCCHHHHHHHHHhhccCCCC-CHHHHHHHHHHHHHHcCCCcc---ccccccCccCCCC
Q 048718 584 --SYK-RIIGFVPQDD--IVHGNLTVEENLWFSARCRLSADL-PKAEKVLVVERVIESLGLQHI---RDSLVGTVEKRGI 654 (1118)
Q Consensus 584 --~~r-~~IgyV~Qd~--~l~~~LTV~EnL~f~a~lr~~~~~-~~~~~~~~v~~lL~~lgL~~~---~dt~vg~~~~rgL 654 (1118)
++| +.|+|||||+ .|-|.+||.+.+.-..+.+. .. .+++.++++.++|+.+||.+. .+. ++++|
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~-----YPhel 154 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPERRLKS-----YPHEL 154 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHHHHhh-----CCccc
Confidence 233 5799999996 57788999999988776532 22 355567789999999999753 344 45669
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEecCcEE
Q 048718 655 SGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAKGGVI 733 (1118)
Q Consensus 655 SGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~i 733 (1118)
||||||||.||.||+.+|+|||.||||++||...+.+|+++|+++.+ .|.++|+||||+.. +.+++|+|+||+. |++
T Consensus 155 SGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~v-va~~aDri~VMYa-G~i 232 (316)
T COG0444 155 SGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMYA-GRI 232 (316)
T ss_pred CCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcceEEEEEC-cEE
Confidence 99999999999999999999999999999999999999999999986 59999999999985 5799999999986 699
Q ss_pred EEecChhhH
Q 048718 734 VYHGPVKKV 742 (1118)
Q Consensus 734 v~~G~~~~l 742 (1118)
|+.|+++++
T Consensus 233 VE~g~~~~i 241 (316)
T COG0444 233 VEEGPVEEI 241 (316)
T ss_pred EEeCCHHHH
Confidence 999999876
No 174
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-38 Score=345.89 Aligned_cols=219 Identities=26% Similarity=0.373 Sum_probs=182.2
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC---ceeEEEECCEecCh-----h
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCI---MSGTILVNGKVASI-----Q 583 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~---~sG~I~inG~~~~~-----~ 583 (1118)
.++++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|++++.+ ++|+|.++|.++.. .
T Consensus 4 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYG--DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEEC--CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 578999999994 4679999999999999999999999999999999999986422 48999999987632 2
Q ss_pred hhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccCCCCCHHHH
Q 048718 584 SYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ----HIRDSLVGTVEKRGISGGQR 659 (1118)
Q Consensus 584 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~----~~~dt~vg~~~~rgLSGGER 659 (1118)
.+++.++|++|++.+++.+||.||+.++.... ......+..+.++++++.+++. +..++.+++ ||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~-----LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLA--GIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATG-----LSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCccc-----CCHHHH
Confidence 45678999999999999999999998765422 1112233344567777777763 344555544 999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecCh
Q 048718 660 KRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPV 739 (1118)
Q Consensus 660 QRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~ 739 (1118)
|||+||++|+.+|+||+|||||+|||+.++..+.+.|+++++ ++|||++||+++. +.+.+|++++|.+ |++++.|++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~~~~~d~i~~l~~-G~i~~~~~~ 231 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMHQ-AARVSDTTSFFLV-GDLVEHGPT 231 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999864 7999999999875 5578999999976 689999998
Q ss_pred hhH
Q 048718 740 KKV 742 (1118)
Q Consensus 740 ~~l 742 (1118)
+++
T Consensus 232 ~~~ 234 (252)
T PRK14272 232 DQL 234 (252)
T ss_pred HHH
Confidence 776
No 175
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=4.7e-39 Score=383.79 Aligned_cols=220 Identities=25% Similarity=0.417 Sum_probs=189.6
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---h-hhcC
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---Q-SYKR 587 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~-~~r~ 587 (1118)
.++++||+++|. ++.+|+|+||+|.+||+++|+||||||||||||+|+|+++ |++|+|.++|.++.. . ..++
T Consensus 4 ~i~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~ 79 (501)
T PRK10762 4 LLQLKGIDKAFP--GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEVTFNGPKSSQEA 79 (501)
T ss_pred eEEEeeeEEEeC--CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHhC
Confidence 488999999994 4679999999999999999999999999999999999997 689999999987632 1 1356
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLS-ADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGL 666 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~-~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIAr 666 (1118)
.++||+|++.+++.+||+||+.++...+.. ......+.+.+++++++.+||.+..++++++ |||||||||+||+
T Consensus 80 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~ 154 (501)
T PRK10762 80 GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGE-----LSIGEQQMVEIAK 154 (501)
T ss_pred CEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhh-----CCHHHHHHHHHHH
Confidence 799999999999999999999987532211 1122333445688999999999888888876 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 667 EMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 667 ALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
||+.+|+||||||||+|||+.++..+.+.|++++++|.|||++||+++. +.+++|++++|.+ |+++..|+++++
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~-~~~~~d~i~~l~~-G~i~~~~~~~~~ 228 (501)
T PRK10762 155 VLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKE-IFEICDDVTVFRD-GQFIAEREVADL 228 (501)
T ss_pred HHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEeC-CEEEEecCcCcC
Confidence 9999999999999999999999999999999998779999999999875 4578999999976 689999988754
No 176
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.9e-39 Score=340.95 Aligned_cols=202 Identities=31% Similarity=0.477 Sum_probs=173.8
Q ss_pred eEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-------hhhcCeE
Q 048718 517 DLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-------QSYKRII 589 (1118)
Q Consensus 517 nLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-------~~~r~~I 589 (1118)
+|+++|++ +.+ |+||+|++ |+++|+|||||||||||++|+|+++ +++|+|.++|.++.. ...++.+
T Consensus 5 ~l~~~~~~--~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 77 (214)
T cd03297 5 DIEKRLPD--FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKINLPPQQRKI 77 (214)
T ss_pred eeeEecCC--eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchhhhhhHhhcE
Confidence 78999953 444 99999999 9999999999999999999999997 689999999987531 2346689
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 048718 590 GFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMV 669 (1118)
Q Consensus 590 gyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl 669 (1118)
+|++|++.+++.+||.||+.+..... .....+.+++++++.+||.+..++.+.+ |||||||||+||+||+
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al~ 147 (214)
T cd03297 78 GLVFQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYPAQ-----LSGGEKQRVALARALA 147 (214)
T ss_pred EEEecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCccc-----CCHHHHHHHHHHHHHh
Confidence 99999999999999999998875321 1223345688999999998877777765 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEec
Q 048718 670 MEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHG 737 (1118)
Q Consensus 670 ~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G 737 (1118)
.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.+.+|++++|.+ |++++.|
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 148 AQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSE-AEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHH-HHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999999999999999999865 8999999999875 4578999999976 6887765
No 177
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-38 Score=346.30 Aligned_cols=219 Identities=24% Similarity=0.399 Sum_probs=182.7
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEecCh-----h
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC---IMSGTILVNGKVASI-----Q 583 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~~~-----~ 583 (1118)
.|+++||++.|. ++.+|+|+||+|++||+++|+|||||||||||++|+|+.++. +++|+|.++|.++.. .
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYG--EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeC--CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 478999999994 467999999999999999999999999999999999998631 278999999987632 2
Q ss_pred hhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHHH
Q 048718 584 SYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH----IRDSLVGTVEKRGISGGQR 659 (1118)
Q Consensus 584 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~----~~dt~vg~~~~rgLSGGER 659 (1118)
.+++.++|++|++.+++ +||+||+.+..... ........+..++++++.+|+.+ ..++.+ +.||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS~Gq~ 152 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIH--GVKSKHKLDRIVEESLKKAALWDEVKSELNKPG-----TRLSGGQQ 152 (250)
T ss_pred HhhhhEEEEecCCccCc-ccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHcCCCchhHHHHhCCh-----hhcCHHHH
Confidence 34678999999999887 89999999875432 11122333455788899999854 244444 45999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecCh
Q 048718 660 KRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPV 739 (1118)
Q Consensus 660 QRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~ 739 (1118)
|||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||+++. +.+.+|++++|.+ |+++..|++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~~-~~~~~d~i~~l~~-G~i~~~g~~ 229 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIGQ-AIRIADYIAFMYR-GELIEYGPT 229 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999999999999999999999999999999999865 7899999999875 4578999999976 689999998
Q ss_pred hhHH
Q 048718 740 KKVE 743 (1118)
Q Consensus 740 ~~l~ 743 (1118)
+++.
T Consensus 230 ~~~~ 233 (250)
T PRK14262 230 REIV 233 (250)
T ss_pred HHHH
Confidence 7764
No 178
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-38 Score=346.83 Aligned_cols=219 Identities=21% Similarity=0.330 Sum_probs=180.7
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--C-CceeEEEECCEecCh-----h
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPG--C-IMSGTILVNGKVASI-----Q 583 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~--~-~~sG~I~inG~~~~~-----~ 583 (1118)
.-+++||++.|+ ++.+|+|+||+|.+||+++|+|+||||||||+++|+|+.++ . +++|+|.++|+++.. .
T Consensus 5 ~~~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 5 HASVKNLNLWYG--SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEEeeeEEEEEC--CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 346889999994 46799999999999999999999999999999999999752 1 369999999987532 1
Q ss_pred hhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCcc----ccccccCccCCCCCHHHH
Q 048718 584 SYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHI----RDSLVGTVEKRGISGGQR 659 (1118)
Q Consensus 584 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~----~dt~vg~~~~rgLSGGER 659 (1118)
.+++.++|++|++.+++. ||+||+.+....+. ...........+.++++.+||.+. .++.+ +.||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSA-----FELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhhcCh-----hhCCHHHH
Confidence 356789999999988875 99999998743321 111222334567889999999652 34444 45999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecCh
Q 048718 660 KRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPV 739 (1118)
Q Consensus 660 QRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~ 739 (1118)
|||+|||+|+.+|+||||||||+|||+.++..+.+.|+++. +|+|||++||+++. +.+.+|++++|.+ |++++.|++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~-~~~~~d~i~~l~~-G~i~~~~~~ 232 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMKQ-AKKVSDRVAFFQS-GRIVEYNTT 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHH-HHhhcCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999999999999999885 48999999999875 4578999999976 689999988
Q ss_pred hhH
Q 048718 740 KKV 742 (1118)
Q Consensus 740 ~~l 742 (1118)
+++
T Consensus 233 ~~~ 235 (251)
T PRK14244 233 QEI 235 (251)
T ss_pred HHH
Confidence 765
No 179
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-38 Score=345.72 Aligned_cols=218 Identities=24% Similarity=0.360 Sum_probs=181.7
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEecC----hhh
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC---IMSGTILVNGKVAS----IQS 584 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~~----~~~ 584 (1118)
.++++||++.|. ++.+|+|+||+|++||+++|+||||||||||+++|+|+.++. +++|+|.++|.++. ...
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYG--ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEEC--CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 478999999994 467999999999999999999999999999999999998732 36899999998763 224
Q ss_pred hcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHHHH
Q 048718 585 YKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH----IRDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 585 ~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~----~~dt~vg~~~~rgLSGGERQ 660 (1118)
+++.++|++|++.+++ .||.||+.++.... ....+....+++.++++.+++.+ ..++.++ .|||||||
T Consensus 81 ~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~LS~G~~q 152 (249)
T PRK14253 81 LRIKVGMVFQKPNPFP-MSIYENVAYGLRAQ--GIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAF-----GLSGGQQQ 152 (249)
T ss_pred HHhheeEEecCCCcCc-ccHHHHHHhHHHhc--CCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcc-----cCCHHHHH
Confidence 5678999999999887 89999999875422 11122333456778888888753 3444444 49999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ +.|||++||+++. +.+.+|++++|.+ |++++.|+.+
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~~~~d~i~~l~~-G~i~~~g~~~ 229 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQQ-ARRISDRTAFFLM-GELVEHDDTQ 229 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHHH-HHHhCCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999999999999999999999875 5899999999875 5678999999976 6899999877
Q ss_pred hH
Q 048718 741 KV 742 (1118)
Q Consensus 741 ~l 742 (1118)
++
T Consensus 230 ~~ 231 (249)
T PRK14253 230 VI 231 (249)
T ss_pred HH
Confidence 65
No 180
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=1.5e-38 Score=348.41 Aligned_cols=218 Identities=26% Similarity=0.343 Sum_probs=182.8
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEe-----cCh---h
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKV-----ASI---Q 583 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~-----~~~---~ 583 (1118)
.++++||++.|. ++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++ +.. .
T Consensus 6 ~l~~~~l~~~~~--~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~i~~~~~~ 81 (258)
T PRK11701 6 LLSVRGLTKLYG--PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDGQLRDLYALSEA 81 (258)
T ss_pred eEEEeeeEEEcC--CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCccccccccccCCHH
Confidence 488999999994 3579999999999999999999999999999999999998 689999999986 431 1
Q ss_pred h----hcCeEEEEcCCCC--CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCH
Q 048718 584 S----YKRIIGFVPQDDI--VHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH-IRDSLVGTVEKRGISG 656 (1118)
Q Consensus 584 ~----~r~~IgyV~Qd~~--l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~-~~dt~vg~~~~rgLSG 656 (1118)
. .++.++|++|++. +++.+|+.||+.+...... .....+.+..++++++.+++.+ ..++.+.+ |||
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LS~ 154 (258)
T PRK11701 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDLPTT-----FSG 154 (258)
T ss_pred HHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCCCcc-----CCH
Confidence 1 2457999999973 6777899999987543211 1122234456789999999974 56776655 999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEE
Q 048718 657 GQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVY 735 (1118)
Q Consensus 657 GERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~ 735 (1118)
||||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |.|||++||+++. +.+.+|++++|.+ |++++
T Consensus 155 Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~-~~~~~d~i~~l~~-g~i~~ 232 (258)
T PRK11701 155 GMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV-ARLLAHRLLVMKQ-GRVVE 232 (258)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH-HHHhcCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998765 8999999999875 4568999999976 69999
Q ss_pred ecChhhH
Q 048718 736 HGPVKKV 742 (1118)
Q Consensus 736 ~G~~~~l 742 (1118)
.|+++++
T Consensus 233 ~~~~~~~ 239 (258)
T PRK11701 233 SGLTDQV 239 (258)
T ss_pred eCCHHHH
Confidence 9998765
No 181
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=9e-39 Score=346.23 Aligned_cols=201 Identities=29% Similarity=0.447 Sum_probs=172.2
Q ss_pred CcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh--hhhcCeEEEEc-CCCCCCCC
Q 048718 525 KNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI--QSYKRIIGFVP-QDDIVHGN 601 (1118)
Q Consensus 525 ~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~IgyV~-Qd~~l~~~ 601 (1118)
+.+++|+|+||+|++||+++|+|||||||||||++|+|+++ |++|+|.++|.+... ..+++.++|++ |++.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 34679999999999999999999999999999999999998 689999999986422 24567899998 55678888
Q ss_pred CCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 048718 602 LTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPT 681 (1118)
Q Consensus 602 LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPT 681 (1118)
+||+||+.+....+ .....+....++++++.+||.+..++.+.+ |||||||||+||++|+.+|++|||||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPVRQ-----LSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998875432 223334445678899999999888888765 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEec
Q 048718 682 SGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHG 737 (1118)
Q Consensus 682 sGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G 737 (1118)
+|||+.++..+.+.|++++++ |.|||++||+++. +.+.+|++++|.+ |++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~-~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKD-IEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHH-HHHhCCEEEEEeC-CEEEecC
Confidence 999999999999999999765 8999999999874 4578999999976 6887754
No 182
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-38 Score=348.19 Aligned_cols=219 Identities=24% Similarity=0.365 Sum_probs=183.6
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-C--ceeEEEECCEecCh-----h
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC-I--MSGTILVNGKVASI-----Q 583 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~-~--~sG~I~inG~~~~~-----~ 583 (1118)
.++++||++.|. ++.+|+|+|++|++||+++|+|+||||||||||+|+|++++. + ++|+|.++|+++.. .
T Consensus 7 ~l~~~~l~~~~~--~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 7 AIKVKDLSFYYN--TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred eEEEEEEEEEEC--CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 588999999994 367999999999999999999999999999999999998732 2 58999999987531 2
Q ss_pred hhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccCCCCCHHHH
Q 048718 584 SYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ----HIRDSLVGTVEKRGISGGQR 659 (1118)
Q Consensus 584 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~----~~~dt~vg~~~~rgLSGGER 659 (1118)
.+++.|+|++|++.+++ +||+||+.++...+. ...+.+..+.++++++.+|+. +..++.+. .||||||
T Consensus 85 ~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~-----~LS~G~~ 156 (259)
T PRK14260 85 RLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKSAL-----GLSGGQQ 156 (259)
T ss_pred hhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcc-----cCCHHHH
Confidence 35678999999999887 899999988754321 123333345678889999884 34455544 4999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEec----CcEEEE
Q 048718 660 KRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAK----GGVIVY 735 (1118)
Q Consensus 660 QRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~----GG~iv~ 735 (1118)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++. +.+.+|++++|.+ +|++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~-i~~~~d~i~~l~~~~~~~G~i~~ 234 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQ-ATRVSDFTAFFSTDESRIGQMVE 234 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-HHHhcCeEEEEeccCCCCceEEE
Confidence 999999999999999999999999999999999999999865 6899999999985 5688999999973 479999
Q ss_pred ecChhhH
Q 048718 736 HGPVKKV 742 (1118)
Q Consensus 736 ~G~~~~l 742 (1118)
.|+++++
T Consensus 235 ~~~~~~~ 241 (259)
T PRK14260 235 FGVTTQI 241 (259)
T ss_pred eCCHHHH
Confidence 9998876
No 183
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-39 Score=383.07 Aligned_cols=220 Identities=24% Similarity=0.359 Sum_probs=188.8
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---h-hhcC
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---Q-SYKR 587 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~-~~r~ 587 (1118)
.++++||++.|. ++.+|+||||+|++||+++|+||||||||||||+|+|+.+ |++|+|.++|+++.. . ..++
T Consensus 5 ~l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~ 80 (510)
T PRK09700 5 YISMAGIGKSFG--PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINYNKLDHKLAAQL 80 (510)
T ss_pred eEEEeeeEEEcC--CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEECCCCCHHHHHHC
Confidence 488999999994 4679999999999999999999999999999999999997 689999999987642 1 1345
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhcc-CCC---CCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRL-SAD---LPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVN 663 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~-~~~---~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVs 663 (1118)
.|+||+|++.+++.+||+||+.++..... ... ....+...+++++++.+||.+..++++++ |||||||||+
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LSgG~~qrv~ 155 (510)
T PRK09700 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVAN-----LSISHKQMLE 155 (510)
T ss_pred CeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhh-----CCHHHHHHHH
Confidence 79999999999999999999987642110 001 12233445788999999999888888876 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 664 VGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 664 IArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
||+||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||+++. +.+++|++++|.+ |++++.|+++++
T Consensus 156 ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~-~~~~~d~v~~l~~-G~i~~~g~~~~~ 232 (510)
T PRK09700 156 IAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAE-IRRICDRYTVMKD-GSSVCSGMVSDV 232 (510)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEeeecchhhC
Confidence 9999999999999999999999999999999999998779999999999875 4578999999976 689999998764
No 184
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-39 Score=347.09 Aligned_cols=214 Identities=30% Similarity=0.471 Sum_probs=176.0
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcCeE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKRII 589 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~I 589 (1118)
++++||++.|++.++.+|+|+||++++||+++|+||||||||||+++|+|+.+ +++|+|.++|.++. ...+++.+
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i 78 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRDYTLASLRRQI 78 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhhCCHHHHHhhE
Confidence 46899999995433479999999999999999999999999999999999998 68999999998753 23456789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHH-----HHHHHHHHHHc--CCCccccccccCccCCCCCHHHHHHH
Q 048718 590 GFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEK-----VLVVERVIESL--GLQHIRDSLVGTVEKRGISGGQRKRV 662 (1118)
Q Consensus 590 gyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~-----~~~v~~lL~~l--gL~~~~dt~vg~~~~rgLSGGERQRV 662 (1118)
+|++|++.+++ .||+||+.+.... ...... ...++++++.+ ++.+..+..+. .|||||||||
T Consensus 79 ~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-----~LS~G~~qrv 147 (234)
T cd03251 79 GLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGERGV-----KLSGGQRQRI 147 (234)
T ss_pred EEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCC-----cCCHHHHHHH
Confidence 99999998886 6999999876421 111111 11245566666 66666665554 4999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 663 NVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 663 sIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
+||+||+.+|++|||||||+|||+.++..+.+.|+++. +|.|||++||+++.. . .+|++++|.+ |++++.|+++++
T Consensus 148 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~-~-~~d~v~~l~~-G~i~~~~~~~~~ 223 (234)
T cd03251 148 AIARALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLSTI-E-NADRIVVLED-GKIVERGTHEEL 223 (234)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHH-h-hCCEEEEecC-CeEeeeCCHHHH
Confidence 99999999999999999999999999999999999886 489999999999754 3 4999999976 689999988776
Q ss_pred H
Q 048718 743 E 743 (1118)
Q Consensus 743 ~ 743 (1118)
.
T Consensus 224 ~ 224 (234)
T cd03251 224 L 224 (234)
T ss_pred H
Confidence 4
No 185
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.4e-40 Score=331.68 Aligned_cols=218 Identities=28% Similarity=0.440 Sum_probs=194.3
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC----------
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---------- 581 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---------- 581 (1118)
.++++||.++| +...+|++||+..+.|+++.|||.|||||||||++|.=+.. |..|.|.+||+.+.
T Consensus 6 ~l~v~dlHK~~--G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~--P~~G~I~v~geei~~k~~~~G~l~ 81 (256)
T COG4598 6 ALEVEDLHKRY--GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSAGSIRVNGEEIRLKRDKDGQLK 81 (256)
T ss_pred ceehhHHHhhc--ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC--CCCceEEECCeEEEeeeCCCCCee
Confidence 47889999999 45789999999999999999999999999999999998887 68999999997531
Q ss_pred ---h---hhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCC
Q 048718 582 ---I---QSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGIS 655 (1118)
Q Consensus 582 ---~---~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLS 655 (1118)
. ..+|.+.|+|||+..++.+|||.||+.-+..-- -+.++.+..++.+.+|..+||.+..+.++.. ||
T Consensus 82 ~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhV--Lg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~-----LS 154 (256)
T COG4598 82 PADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHV--LGVSKAEAIERAEKYLAKVGIAEKADAYPAH-----LS 154 (256)
T ss_pred eCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHh--hcCCHHHHHHHHHHHHHHhCchhhhhcCccc-----cC
Confidence 1 235678999999999999999999998764322 2457788888999999999999999988776 99
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEE
Q 048718 656 GGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVY 735 (1118)
Q Consensus 656 GGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~ 735 (1118)
|||+||++|||||+.+|+++++|||||+|||.-.-++++.+++|+++|+|.+++||.+.++ .+....+++|.+ |.|-+
T Consensus 155 GGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FA-R~Vss~v~fLh~-G~iEE 232 (256)
T COG4598 155 GGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFA-RDVSSHVIFLHQ-GKIEE 232 (256)
T ss_pred chHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHH-HhhhhheEEeec-ceecc
Confidence 9999999999999999999999999999999999999999999999999999999999875 478889999976 69999
Q ss_pred ecChhhH
Q 048718 736 HGPVKKV 742 (1118)
Q Consensus 736 ~G~~~~l 742 (1118)
+|+++++
T Consensus 233 ~G~P~qv 239 (256)
T COG4598 233 EGPPEQV 239 (256)
T ss_pred cCChHHH
Confidence 9999876
No 186
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.8e-38 Score=339.85 Aligned_cols=209 Identities=26% Similarity=0.447 Sum_probs=180.0
Q ss_pred EEEEeEEEEEcCC--cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh------hh
Q 048718 513 VAFKDLTITLKGK--NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI------QS 584 (1118)
Q Consensus 513 l~~knLs~~~~~~--~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------~~ 584 (1118)
++++||++.|..+ .+.+|+|+||++++||+++|+|+||||||||+++|+|+++ +++|+|.++|.++.. ..
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~ 79 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELYGASEKELVQ 79 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhHhcCHhHHHH
Confidence 6789999998532 2679999999999999999999999999999999999997 689999999987632 13
Q ss_pred hcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 048718 585 YKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNV 664 (1118)
Q Consensus 585 ~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsI 664 (1118)
+++.++|++|++.+++.+|+.||+.++.... ......+.+..++++++.+||.+..++.+.+ |||||||||+|
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----lS~G~~qrv~l 152 (220)
T TIGR02982 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQ--PNLSYQEARERARAMLEAVGLGDHLDYYPHN-----LSGGQKQRVAI 152 (220)
T ss_pred HHhheEEEcCChhhcCCCCHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCChhhhhcChhh-----CCHHHHHHHHH
Confidence 5678999999999999899999999875432 1123444456789999999998888877755 99999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEecCcEE
Q 048718 665 GLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAKGGVI 733 (1118)
Q Consensus 665 ArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~i 733 (1118)
||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++. .+.+|++++|.+ |++
T Consensus 153 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~--~~~~d~v~~l~~-g~~ 219 (220)
T TIGR02982 153 ARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRI--LDVADRIVHMED-GKL 219 (220)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH--HhhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999886 48999999999863 479999999976 554
No 187
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-38 Score=344.11 Aligned_cols=218 Identities=23% Similarity=0.339 Sum_probs=180.8
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEecCh-----h
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC---IMSGTILVNGKVASI-----Q 583 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~~~-----~ 583 (1118)
.++++||++.|+ .+++|+|+|++|++||+++|+|+||||||||+++|+|++++. +.+|+|.++|+++.. .
T Consensus 4 ~l~~~~l~~~~~--~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYG--NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEEC--CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 478999999994 367999999999999999999999999999999999998521 369999999987531 2
Q ss_pred hhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccCCCCCHHHH
Q 048718 584 SYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ----HIRDSLVGTVEKRGISGGQR 659 (1118)
Q Consensus 584 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~----~~~dt~vg~~~~rgLSGGER 659 (1118)
.+++.++|++|++.+++ .||+||+.++.... ...........++++++.++|. +..++.+. .||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-----~LS~Gq~ 153 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIA--GVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQ-----AFSGGQQ 153 (251)
T ss_pred HhhccEEEEecCCccCC-CcHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcCCCcchHHHhccChh-----hCCHHHH
Confidence 35678999999998886 79999998875422 1112222335678889999984 33455444 4999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecCh
Q 048718 660 KRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPV 739 (1118)
Q Consensus 660 QRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~ 739 (1118)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++. +.+.+|++++|.+ |+++..|+.
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~-~~~~~d~i~~l~~-G~i~~~~~~ 230 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQQ-AGRISDQTAFLMN-GDLIEAGPT 230 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHHH-HHhhcCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999854 6899999999875 4578999999976 689999988
Q ss_pred hhH
Q 048718 740 KKV 742 (1118)
Q Consensus 740 ~~l 742 (1118)
+++
T Consensus 231 ~~~ 233 (251)
T PRK14251 231 EEM 233 (251)
T ss_pred HHH
Confidence 765
No 188
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=4.5e-39 Score=397.25 Aligned_cols=213 Identities=26% Similarity=0.404 Sum_probs=183.1
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcC
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKR 587 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 587 (1118)
..++++||+|+|++.++++|+|+|++|++||.+||+|+||||||||+|+|+|+++ |.+|+|++||+++. ...+|+
T Consensus 450 ~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i~~~~~~~lr~ 527 (686)
T TIGR03797 450 GAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET--PESGSVFYDGQDLAGLDVQAVRR 527 (686)
T ss_pred ceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcCcCCHHHHHh
Confidence 3699999999996555789999999999999999999999999999999999998 68999999998864 456899
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCCCHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-------HIRDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-------~~~dt~vg~~~~rgLSGGERQ 660 (1118)
.||||+|++.+|+. |++|||.++.. .+++ .+.++++..|+. +..||.+|+ ....|||||||
T Consensus 528 ~i~~v~Q~~~lf~g-TI~eNi~~~~~------~~~e----~i~~al~~a~l~~~i~~lp~G~dt~ige-~G~~LSGGQrQ 595 (686)
T TIGR03797 528 QLGVVLQNGRLMSG-SIFENIAGGAP------LTLD----EAWEAARMAGLAEDIRAMPMGMHTVISE-GGGTLSGGQRQ 595 (686)
T ss_pred ccEEEccCCccCcc-cHHHHHhcCCC------CCHH----HHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHH
Confidence 99999999999965 99999998632 2222 245556665554 345788876 45679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
|++|||||+++|+||+||||||+||+.++..+.+.|+++ ++|+|+++|+++. .+.+|++++|++ |++++.|+.+
T Consensus 596 RialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~--i~~~D~Iivl~~-G~iv~~G~~~ 669 (686)
T TIGR03797 596 RLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLST--IRNADRIYVLDA-GRVVQQGTYD 669 (686)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHH--HHcCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999999999999999875 5899999999864 478999999976 6999999988
Q ss_pred hHH
Q 048718 741 KVE 743 (1118)
Q Consensus 741 ~l~ 743 (1118)
++.
T Consensus 670 ~Ll 672 (686)
T TIGR03797 670 ELM 672 (686)
T ss_pred HHH
Confidence 764
No 189
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-38 Score=347.00 Aligned_cols=218 Identities=25% Similarity=0.335 Sum_probs=181.0
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--C-CCceeEEEECCEecCh-----h
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVP--G-CIMSGTILVNGKVASI-----Q 583 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~--~-~~~sG~I~inG~~~~~-----~ 583 (1118)
.++++||++.|. ++.+|+|+||+|++||+++|+|||||||||||++|+|+.+ + .+++|+|.++|+++.. .
T Consensus 21 ~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYG--EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeC--CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 589999999994 4679999999999999999999999999999999999863 1 1479999999987632 2
Q ss_pred hhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccCCCCCHHHH
Q 048718 584 SYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ----HIRDSLVGTVEKRGISGGQR 659 (1118)
Q Consensus 584 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~----~~~dt~vg~~~~rgLSGGER 659 (1118)
.+++.++|++|++.+++. ||+||+.+..... ...........+.++++.+++. +..++.+++ ||||||
T Consensus 99 ~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~-----LSgGq~ 170 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPK-SIYNNITHALKYA--GERRKSVLDEIVEESLTKAALWDEVKDRLHSSALS-----LSGGQQ 170 (268)
T ss_pred HHhccEEEEecCCccCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCccc-----CCHHHH
Confidence 356789999999988875 9999999875322 1112222334577788888885 334555554 999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecCh
Q 048718 660 KRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPV 739 (1118)
Q Consensus 660 QRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~ 739 (1118)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++. +.+.+|++++|.+ |++++.|+.
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~-~~~~~d~v~~l~~-G~i~~~~~~ 247 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQQ-ALRVSDRTAFFLN-GDLVEYDQT 247 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHHH-HHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999865 6899999999875 4578999999976 689999998
Q ss_pred hhH
Q 048718 740 KKV 742 (1118)
Q Consensus 740 ~~l 742 (1118)
+++
T Consensus 248 ~~~ 250 (268)
T PRK14248 248 EQI 250 (268)
T ss_pred HHH
Confidence 765
No 190
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-38 Score=344.22 Aligned_cols=218 Identities=23% Similarity=0.323 Sum_probs=181.6
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC---ceeEEEECCEecCh-----h
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCI---MSGTILVNGKVASI-----Q 583 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~---~sG~I~inG~~~~~-----~ 583 (1118)
.|+++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+.++.+ ++|+|.++|+++.. .
T Consensus 6 ~i~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYG--EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEEC--CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 588999999994 4679999999999999999999999999999999999875322 48999999987632 2
Q ss_pred hhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHHH
Q 048718 584 SYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH----IRDSLVGTVEKRGISGGQR 659 (1118)
Q Consensus 584 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~----~~dt~vg~~~~rgLSGGER 659 (1118)
..++.++|++|++.+++. ||+||+.+....+. .......+..+.++++.++|.+ ..++.+. .||||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~-----~LS~G~~ 155 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRLHDSAL-----SLSGGQQ 155 (253)
T ss_pred hhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHhhcChh-----hCCHHHH
Confidence 346779999999998875 99999998765321 1122333456788889888853 2344444 5999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecCh
Q 048718 660 KRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPV 739 (1118)
Q Consensus 660 QRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~ 739 (1118)
|||+|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||+++|+++. +.+.+|++++|.+ |+++..|++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~-~~~~~d~v~~l~~-G~i~~~g~~ 232 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQ-AARVSDYTGFMYL-GKLIEFDKT 232 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHH-HHhhCCEEEEEEC-CEEEEcCCH
Confidence 999999999999999999999999999999999999999875 5899999999875 4578999999976 689999998
Q ss_pred hhH
Q 048718 740 KKV 742 (1118)
Q Consensus 740 ~~l 742 (1118)
+++
T Consensus 233 ~~~ 235 (253)
T PRK14261 233 TQI 235 (253)
T ss_pred HHH
Confidence 765
No 191
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-38 Score=333.02 Aligned_cols=188 Identities=44% Similarity=0.745 Sum_probs=164.2
Q ss_pred EEEEEeEEEEEcCC--cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeE
Q 048718 512 EVAFKDLTITLKGK--NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRII 589 (1118)
Q Consensus 512 ~l~~knLs~~~~~~--~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~I 589 (1118)
.++++|+++.|... ++++|+|+||++++||+++|+|||||||||||++|+|+....+++|+|.++|+++. ..+++.+
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-~~~~~~i 81 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-KNFQRST 81 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-HHhhhce
Confidence 47899999999631 25799999999999999999999999999999999998642258999999998765 4456789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 048718 590 GFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMV 669 (1118)
Q Consensus 590 gyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl 669 (1118)
+|++|++.+++.+||+||+.++... + .|||||||||+||+||+
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~---------------~----------------------~LSgGe~qrv~la~al~ 124 (192)
T cd03232 82 GYVEQQDVHSPNLTVREALRFSALL---------------R----------------------GLSVEQRKRLTIGVELA 124 (192)
T ss_pred EEecccCccccCCcHHHHHHHHHHH---------------h----------------------cCCHHHhHHHHHHHHHh
Confidence 9999999999999999999875311 0 39999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEec
Q 048718 670 MEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHG 737 (1118)
Q Consensus 670 ~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G 737 (1118)
.+|++|||||||+|||+.++..+.+.|+++++.|+|||++||+++..+.+.+|++++|.++|++++.|
T Consensus 125 ~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 125 AKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred cCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999887799999999998754567899999997637888865
No 192
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-38 Score=335.96 Aligned_cols=194 Identities=31% Similarity=0.539 Sum_probs=165.3
Q ss_pred EEEEEeEEEEEcCC--cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CceeEEEECCEecCh--hhhc
Q 048718 512 EVAFKDLTITLKGK--NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC-IMSGTILVNGKVASI--QSYK 586 (1118)
Q Consensus 512 ~l~~knLs~~~~~~--~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~-~~sG~I~inG~~~~~--~~~r 586 (1118)
.+.|+||+|.|+.+ ++.+|+|+||+|++||+++|+|||||||||||++|+|++++. +++|+|.++|.++.. ...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 47899999999743 568999999999999999999999999999999999998743 579999999987643 2456
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 048718 587 RIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGL 666 (1118)
Q Consensus 587 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIAr 666 (1118)
+.++|++|++.+++.+||+||+.++.... .++.+. .|||||||||+||+
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~~~-----~LS~Ge~qrl~lar 131 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEFVR-----GISGGERKRVSIAE 131 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccchh-----hCCHHHHHHHHHHH
Confidence 78999999999999999999998764210 233443 49999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEec
Q 048718 667 EMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHG 737 (1118)
Q Consensus 667 ALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G 737 (1118)
||+.+|+||||||||+|||+.++..+.+.|+++.++ +.|+|+++|+....+.+.+|++++|.+ |++++.|
T Consensus 132 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~g 202 (202)
T cd03233 132 ALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYYG 202 (202)
T ss_pred HHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999765 678788777654456789999999976 6887754
No 193
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-38 Score=343.38 Aligned_cols=218 Identities=21% Similarity=0.326 Sum_probs=180.2
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEecCh-----h
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC---IMSGTILVNGKVASI-----Q 583 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~~~-----~ 583 (1118)
.++++||++.|. ++.+|+|+||+|.+||+++|+|||||||||||++|+|++++. +.+|+|.++|.++.. .
T Consensus 4 ~l~~~~l~~~~~--~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYH--KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEEC--CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 478999999994 367999999999999999999999999999999999998731 126999999987531 2
Q ss_pred hhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHHH
Q 048718 584 SYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH----IRDSLVGTVEKRGISGGQR 659 (1118)
Q Consensus 584 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~----~~dt~vg~~~~rgLSGGER 659 (1118)
.+++.++|++|++.+++. ||+||+.++...+. ..........++++++.++|.+ ..++.++ .||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~-----~LS~Gq~ 153 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLG--TTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGL-----ALSGGQQ 153 (251)
T ss_pred HhhceEEEEecCCccCcC-cHHHHHhhHHHhcC--CChhhHHHHHHHHHHHHhCCchhhhhHhhCCcc-----cCCHHHH
Confidence 457789999999998875 99999998764321 1112223345777888888753 3444444 5999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecCh
Q 048718 660 KRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPV 739 (1118)
Q Consensus 660 QRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~ 739 (1118)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++. ++.|||++||+++. +.+.+|++++|.+ |++++.|++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~~-~~~~~d~i~~l~~-G~i~~~~~~ 230 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQ-AARASDWTGFLLT-GDLVEYGRT 230 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHH-HHhhCCEEEEEeC-CeEEEeCCH
Confidence 99999999999999999999999999999999999999885 58999999999876 4578999999975 689999998
Q ss_pred hhH
Q 048718 740 KKV 742 (1118)
Q Consensus 740 ~~l 742 (1118)
+++
T Consensus 231 ~~~ 233 (251)
T PRK14249 231 GEI 233 (251)
T ss_pred HHH
Confidence 765
No 194
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=6.1e-39 Score=389.40 Aligned_cols=214 Identities=28% Similarity=0.454 Sum_probs=180.1
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcC
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKR 587 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 587 (1118)
..++++||++.|.. ++++|+|+|++|++||.+||+||||||||||+++|+|++ + .+|+|.+||.++. ...+|+
T Consensus 348 ~~i~~~~vsf~~~~-~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~i~~~~~~~lr~ 423 (588)
T PRK11174 348 VTIEAEDLEILSPD-GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIELRELDPESWRK 423 (588)
T ss_pred ceEEEEeeEEeccC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEecccCCHHHHHh
Confidence 36999999986643 467999999999999999999999999999999999999 4 6899999998764 356889
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCCCCCHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLG-------LQHIRDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lg-------L~~~~dt~vg~~~~rgLSGGERQ 660 (1118)
.|+||+|++.+|.. |++|||.++.. +.++++ +.++++..+ |.+..||.+|+ ....|||||||
T Consensus 424 ~i~~v~Q~~~LF~~-TI~eNI~~g~~-----~~~~ee----i~~al~~a~l~~~i~~lp~G~dT~vge-~G~~LSGGQrQ 492 (588)
T PRK11174 424 HLSWVGQNPQLPHG-TLRDNVLLGNP-----DASDEQ----LQQALENAWVSEFLPLLPQGLDTPIGD-QAAGLSVGQAQ 492 (588)
T ss_pred heEEecCCCcCCCc-CHHHHhhcCCC-----CCCHHH----HHHHHHHhCHHHHHHhccccccccccc-CCCCCCHHHHH
Confidence 99999999999965 99999998631 233333 333333333 34456888886 35569999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
|++|||||+++|+|||||||||+||+.++..+.+.|+++. +++|+|+++|+++. .+.+|++++|++ |++++.|+.+
T Consensus 493 RialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~~--i~~aD~Iivl~~-G~i~e~G~~~ 568 (588)
T PRK11174 493 RLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLED--LAQWDQIWVMQD-GQIVQQGDYA 568 (588)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChHH--HHhCCEEEEEeC-CeEeecCCHH
Confidence 9999999999999999999999999999999999998875 58999999999864 478999999976 6999999988
Q ss_pred hHH
Q 048718 741 KVE 743 (1118)
Q Consensus 741 ~l~ 743 (1118)
++.
T Consensus 569 eL~ 571 (588)
T PRK11174 569 ELS 571 (588)
T ss_pred HHH
Confidence 764
No 195
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-38 Score=345.71 Aligned_cols=221 Identities=22% Similarity=0.334 Sum_probs=184.2
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEecCh-----h
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC---IMSGTILVNGKVASI-----Q 583 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~~~-----~ 583 (1118)
.|+++||++.|. ++.+|+|+||+|++||+++|+|+|||||||||++|+|++++. +.+|+|.++|+++.. .
T Consensus 7 ~l~~~nl~~~~~--~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 7 AIKVNNLSFYYD--TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred eEEEeeEEEEeC--CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 588999999994 357999999999999999999999999999999999999731 138999999987531 2
Q ss_pred hhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHHH
Q 048718 584 SYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH----IRDSLVGTVEKRGISGGQR 659 (1118)
Q Consensus 584 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~----~~dt~vg~~~~rgLSGGER 659 (1118)
.+++.++|++|++.+++ +||.||+.+..... ...+..+..+.+.++++.+++.+ ..++.+. .||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-----~LSgGq~ 156 (261)
T PRK14258 85 RLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIV--GWRPKLEIDDIVESALKDADLWDEIKHKIHKSAL-----DLSGGQQ 156 (261)
T ss_pred HhhccEEEEecCCccCc-ccHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcc-----cCCHHHH
Confidence 45678999999998887 89999998875322 11123333456788999998854 3445444 4999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEecC----cEEE
Q 048718 660 KRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAKG----GVIV 734 (1118)
Q Consensus 660 QRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~G----G~iv 734 (1118)
|||+|||+|+.+|++|||||||+|||+.++..+.+.|++++. .|.|||++||+++. +.+++|++++|.++ |+++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~-i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQ-VSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHH-HHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999999875 48999999999875 56899999999762 6899
Q ss_pred EecChhhHH
Q 048718 735 YHGPVKKVE 743 (1118)
Q Consensus 735 ~~G~~~~l~ 743 (1118)
+.|+++++.
T Consensus 236 ~~~~~~~~~ 244 (261)
T PRK14258 236 EFGLTKKIF 244 (261)
T ss_pred EeCCHHHHH
Confidence 999998863
No 196
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-38 Score=348.53 Aligned_cols=220 Identities=25% Similarity=0.390 Sum_probs=184.3
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEecCh----h
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC---IMSGTILVNGKVASI----Q 583 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~~~----~ 583 (1118)
..+.++||+++|+ ++.+|+|+||+|++||+++|+|||||||||||++|+|++++. +.+|+|.++|.++.. .
T Consensus 20 ~~l~i~nl~~~~~--~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 20 PAMAAVNLTLGFA--GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred cEEEEeeEEEEEC--CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 3589999999994 468999999999999999999999999999999999998731 369999999987632 2
Q ss_pred hhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCcc----ccccccCccCCCCCHHHH
Q 048718 584 SYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHI----RDSLVGTVEKRGISGGQR 659 (1118)
Q Consensus 584 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~----~dt~vg~~~~rgLSGGER 659 (1118)
.+++.++|++|++.+++ +||+||+.++.... ......+....+.++++.+||.+. .++.+ +.||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~-----~~LSgGq~ 169 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSP-----FRLSGGQQ 169 (276)
T ss_pred HHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCc-----ccCCHHHH
Confidence 45678999999998887 79999999875322 112333444456788999999753 34444 45999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecCh
Q 048718 660 KRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPV 739 (1118)
Q Consensus 660 QRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~ 739 (1118)
|||+|||+|+.+|+||||||||+|||+.++..+.+.|+++++ +.|||+++|+++. +.+++|++++|.+ |++++.|++
T Consensus 170 qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~-~~~~~dri~~l~~-G~i~~~g~~ 246 (276)
T PRK14271 170 QLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQ-AARISDRAALFFD-GRLVEEGPT 246 (276)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999875 5899999999875 5678999999976 699999998
Q ss_pred hhHH
Q 048718 740 KKVE 743 (1118)
Q Consensus 740 ~~l~ 743 (1118)
+++.
T Consensus 247 ~~~~ 250 (276)
T PRK14271 247 EQLF 250 (276)
T ss_pred HHHH
Confidence 7763
No 197
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-38 Score=350.37 Aligned_cols=217 Identities=23% Similarity=0.345 Sum_probs=180.6
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCceeEEEECCEecC-----hh
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPG---CIMSGTILVNGKVAS-----IQ 583 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~---~~~sG~I~inG~~~~-----~~ 583 (1118)
.|+++||++.|. ++.+|+|+||+|++||+++|+|||||||||||++|+|++++ .+++|+|.++|.++. ..
T Consensus 39 ~l~i~~l~~~~~--~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~ 116 (285)
T PRK14254 39 VIEARDLNVFYG--DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPV 116 (285)
T ss_pred eEEEEEEEEEEC--CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchH
Confidence 588999999994 36799999999999999999999999999999999999862 147999999998753 12
Q ss_pred hhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHHH
Q 048718 584 SYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH----IRDSLVGTVEKRGISGGQR 659 (1118)
Q Consensus 584 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~----~~dt~vg~~~~rgLSGGER 659 (1118)
.+++.++|++|++.+++. ||.||+.+....+ .... .....++++++.+||.+ ..++.++ .||||||
T Consensus 117 ~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~-----~LSgGe~ 186 (285)
T PRK14254 117 ALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQ---GYDG-DIDERVEESLRRAALWDEVKDQLDSSGL-----DLSGGQQ 186 (285)
T ss_pred hhhccEEEEecCCccCcC-CHHHHHHHHHHHc---CCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcc-----cCCHHHH
Confidence 456789999999988875 9999999875432 1122 23456889999999853 4455554 4999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecCh
Q 048718 660 KRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPV 739 (1118)
Q Consensus 660 QRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~ 739 (1118)
|||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ +.|||+++|+++. +.+++|+++++.++|++++.|+.
T Consensus 187 qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~~-i~~~~dri~v~l~~G~i~~~g~~ 264 (285)
T PRK14254 187 QRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQQ-AARISDKTAVFLTGGELVEFDDT 264 (285)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-HHhhcCEEEEEeeCCEEEEeCCH
Confidence 999999999999999999999999999999999999999976 4799999999875 45789997654345799999988
Q ss_pred hhH
Q 048718 740 KKV 742 (1118)
Q Consensus 740 ~~l 742 (1118)
+++
T Consensus 265 ~~~ 267 (285)
T PRK14254 265 DKI 267 (285)
T ss_pred HHH
Confidence 765
No 198
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-38 Score=341.93 Aligned_cols=218 Identities=22% Similarity=0.305 Sum_probs=179.7
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC---ceeEEEECCEecC-----hh
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCI---MSGTILVNGKVAS-----IQ 583 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~---~sG~I~inG~~~~-----~~ 583 (1118)
.++++||++.|+ ++.+|+|+||+|.+||+++|+|||||||||||++|+|+.+..+ ++|+|.++|+++. ..
T Consensus 5 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYG--KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEEC--CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 588999999995 3679999999999999999999999999999999999864212 5899999998763 12
Q ss_pred hhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccCCCCCHHHH
Q 048718 584 SYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ----HIRDSLVGTVEKRGISGGQR 659 (1118)
Q Consensus 584 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~----~~~dt~vg~~~~rgLSGGER 659 (1118)
.+++.++|++|++.+++ .||+||+.+....+. ..........+.+.++.+++. +..++.++ .||||||
T Consensus 83 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~-----~LS~Gq~ 154 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAG--VKDKAVLDEAVETSLKQAAIWDEVKDHLHESAL-----SLSGGQQ 154 (252)
T ss_pred HhcCeEEEEECCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCccchhhHHhcCcc-----cCCHHHH
Confidence 45678999999998887 699999998754321 111222234567778888764 33455554 4999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecCh
Q 048718 660 KRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPV 739 (1118)
Q Consensus 660 QRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~ 739 (1118)
|||+|||+|+.+|+||||||||+|||+.++..+.+.|+++.+ +.|||++||+++. +.+.+|++++|.+ |+++..|++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~-~~~~~d~i~~l~~-G~i~~~~~~ 231 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMHQ-ASRISDKTAFFLT-GNLIEFADT 231 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHHH-HHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999865 5899999999875 5578999999976 689999988
Q ss_pred hhH
Q 048718 740 KKV 742 (1118)
Q Consensus 740 ~~l 742 (1118)
.++
T Consensus 232 ~~~ 234 (252)
T PRK14255 232 KQM 234 (252)
T ss_pred HHH
Confidence 765
No 199
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=4.4e-38 Score=344.25 Aligned_cols=216 Identities=24% Similarity=0.381 Sum_probs=180.7
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeEEEECCEecChhhh-cCe
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC--IMSGTILVNGKVASIQSY-KRI 588 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~--~~sG~I~inG~~~~~~~~-r~~ 588 (1118)
.++++||+++| ++++|+|+|++|++||+++|+||||||||||+++|+|+.++. +++|+|.++|+++..... ++.
T Consensus 4 ~l~~~~l~~~~---~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 80 (254)
T PRK10418 4 QIELRNIALQA---AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRK 80 (254)
T ss_pred EEEEeCeEEEe---ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccce
Confidence 58899999999 257999999999999999999999999999999999999721 189999999987653322 357
Q ss_pred EEEEcCCCC--CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCccCCCCCHHHHHHHH
Q 048718 589 IGFVPQDDI--VHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH---IRDSLVGTVEKRGISGGQRKRVN 663 (1118)
Q Consensus 589 IgyV~Qd~~--l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~---~~dt~vg~~~~rgLSGGERQRVs 663 (1118)
|+||+|++. +.+.+|+.+++.+.+... .... ....+.++++.+||.+ ..++.+++ |||||||||+
T Consensus 81 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~-----LS~Gq~qrv~ 150 (254)
T PRK10418 81 IATIMQNPRSAFNPLHTMHTHARETCLAL---GKPA--DDATLTAALEAVGLENAARVLKLYPFE-----MSGGMLQRMM 150 (254)
T ss_pred EEEEecCCccccCccccHHHHHHHHHHHc---CCCh--HHHHHHHHHHHcCCCChhhhhhcCCcc-----cCHHHHHHHH
Confidence 999999974 446689999987754322 1112 1246789999999976 35666654 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 664 VGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 664 IArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
|||||+.+|+||||||||+|||+.++..+.+.|++++++ |.|||+++|+++. +.+.+|++++|.+ |++++.|+++++
T Consensus 151 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~-~~~~~d~v~~l~~-G~i~~~~~~~~~ 228 (254)
T PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGV-VARLADDVAVMSH-GRIVEQGDVETL 228 (254)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH-HHHhCCEEEEEEC-CEEEEecCHHHH
Confidence 999999999999999999999999999999999998764 8999999999875 4578999999976 689999998765
No 200
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=6.3e-39 Score=346.73 Aligned_cols=215 Identities=27% Similarity=0.452 Sum_probs=172.2
Q ss_pred EEEEeEEEEEcCC-cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcCe
Q 048718 513 VAFKDLTITLKGK-NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKRI 588 (1118)
Q Consensus 513 l~~knLs~~~~~~-~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 588 (1118)
++++|+++.|.+. ++.+|+|+||++++||+++|+|||||||||||++|+|+++ +++|+|.++|.++. ...+++.
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~ 78 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRDLNLRWLRSQ 78 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhhcCHHHHHhh
Confidence 3688999999532 2569999999999999999999999999999999999997 68999999998753 2234567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCccCCCCCHHHHHH
Q 048718 589 IGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVL-----VVERVIESL--GLQHIRDSLVGTVEKRGISGGQRKR 661 (1118)
Q Consensus 589 IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~-----~v~~lL~~l--gL~~~~dt~vg~~~~rgLSGGERQR 661 (1118)
++|++|++.+++ .||+||+.+....+ ...+... .+.++++.+ ++.+..++.+ +.||||||||
T Consensus 79 i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~LS~G~~qr 147 (238)
T cd03249 79 IGLVSQEPVLFD-GTIAENIRYGKPDA-----TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERG-----SQLSGGQKQR 147 (238)
T ss_pred EEEECCchhhhh-hhHHHHhhccCCCC-----CHHHHHHHHHHcChHHHHHhhccccceeeccCC-----ccCCHHHHHH
Confidence 999999998886 69999998753211 1111110 122233333 4444444444 4599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhh
Q 048718 662 VNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKK 741 (1118)
Q Consensus 662 VsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~ 741 (1118)
|+||++|+.+|++|||||||+|||+.++..+.+.|+++. +|+|||++||+++.. ..+|++++|.+ |++++.|+.++
T Consensus 148 v~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~--~~~d~v~~l~~-G~i~~~~~~~~ 223 (238)
T cd03249 148 IAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTI--RNADLIAVLQN-GQVVEQGTHDE 223 (238)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHH--hhCCEEEEEEC-CEEEEeCCHHH
Confidence 999999999999999999999999999999999999887 799999999998753 47999999976 68999999877
Q ss_pred HHH
Q 048718 742 VEE 744 (1118)
Q Consensus 742 l~~ 744 (1118)
+..
T Consensus 224 ~~~ 226 (238)
T cd03249 224 LMA 226 (238)
T ss_pred Hhh
Confidence 644
No 201
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.1e-38 Score=379.12 Aligned_cols=213 Identities=25% Similarity=0.421 Sum_probs=187.2
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hh-hcC
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QS-YKR 587 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~-~r~ 587 (1118)
.++++||+++|. ++.+|+|+||+|++||+++|+||||||||||||+|+|+++ |++|+|.++|.++.. .. .++
T Consensus 11 ~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~ 86 (510)
T PRK15439 11 LLCARSISKQYS--GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPCARLTPAKAHQL 86 (510)
T ss_pred eEEEEeEEEEeC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHHHhC
Confidence 588999999994 4679999999999999999999999999999999999997 689999999987632 12 234
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
.+|||+|++.+++.+||+||+.+.... ..+.+++++++++.+||.+..++.+++ |||||||||+||+|
T Consensus 87 ~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~a 154 (510)
T PRK15439 87 GIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSAGS-----LEVADRQIVEILRG 154 (510)
T ss_pred CEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCChhh-----CCHHHHHHHHHHHH
Confidence 699999999999999999999886421 122345688999999999888888876 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 668 MVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 668 Ll~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
|+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||+++. +.+++|++++|.+ |++++.|+++++
T Consensus 155 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~-~~~~~d~i~~l~~-G~i~~~g~~~~~ 227 (510)
T PRK15439 155 LMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPE-IRQLADRISVMRD-GTIALSGKTADL 227 (510)
T ss_pred HHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEecChHHc
Confidence 999999999999999999999999999999998789999999999875 4578999999976 689999998765
No 202
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-39 Score=371.38 Aligned_cols=217 Identities=26% Similarity=0.470 Sum_probs=184.2
Q ss_pred CceEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhh
Q 048718 509 PTIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSY 585 (1118)
Q Consensus 509 ~~~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~ 585 (1118)
+...|+|+||++.|. .+++||+++||+|++||-+||+|+|||||||+||+|.++.+ .+|+|++||++++ ...+
T Consensus 348 ~~~~I~F~dV~f~y~-~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG~dik~~~~~Sl 423 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYG-PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDGQDIKEVSLESL 423 (591)
T ss_pred CCCcEEEEeeEEEeC-CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECCeeHhhhChHHh
Confidence 345699999999995 44669999999999999999999999999999999999997 6999999999864 4578
Q ss_pred cCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCCCCCHHH
Q 048718 586 KRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGL-------QHIRDSLVGTVEKRGISGGQ 658 (1118)
Q Consensus 586 r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL-------~~~~dt~vg~~~~rgLSGGE 658 (1118)
|+.|||||||..||.+ ||.+||.|+.. ..+.++ |-++.+..|+ ++.+.|.||+ ....|||||
T Consensus 424 R~~Ig~VPQd~~LFnd-TIl~NI~YGn~-----sas~ee----V~e~~k~a~~hd~i~~l~~GY~T~VGe-rG~~LSGGe 492 (591)
T KOG0057|consen 424 RQSIGVVPQDSVLFND-TILYNIKYGNP-----SASDEE----VVEACKRAGLHDVISRLPDGYQTLVGE-RGLMLSGGE 492 (591)
T ss_pred hhheeEeCCcccccch-hHHHHhhcCCC-----CcCHHH----HHHHHHHcCcHHHHHhccccchhhHhh-cccccccch
Confidence 9999999999999955 99999999843 223333 3333444443 5567788887 344599999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecC
Q 048718 659 RKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGP 738 (1118)
Q Consensus 659 RQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~ 738 (1118)
||||+||||++++|+|+++|||||.||..+..++++.+++ ...|+|+|+|.|+++. ...||+|++|++ |++.+.|+
T Consensus 493 kQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~l--l~~~DkI~~l~n-G~v~e~gt 568 (591)
T KOG0057|consen 493 KQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLDL--LKDFDKIIVLDN-GTVKEYGT 568 (591)
T ss_pred HHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecchh--HhcCCEEEEEEC-CeeEEecc
Confidence 9999999999999999999999999999999999999988 4468999999999874 478999999987 58999999
Q ss_pred hhhHHH
Q 048718 739 VKKVEE 744 (1118)
Q Consensus 739 ~~~l~~ 744 (1118)
-+++..
T Consensus 569 h~ell~ 574 (591)
T KOG0057|consen 569 HSELLA 574 (591)
T ss_pred HHHHhh
Confidence 998864
No 203
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=4.7e-38 Score=347.02 Aligned_cols=220 Identities=26% Similarity=0.373 Sum_probs=185.8
Q ss_pred EEEEEeEEEEEcC-------CcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh--
Q 048718 512 EVAFKDLTITLKG-------KNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-- 582 (1118)
Q Consensus 512 ~l~~knLs~~~~~-------~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-- 582 (1118)
.|+++||++.|.. .++.+|+|+||+|++||+++|+|||||||||||++|+|+.+ +++|+|.++|.++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~~~~ 80 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLAKLN 80 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccccC
Confidence 4789999999952 13679999999999999999999999999999999999987 689999999987532
Q ss_pred ----hhhcCeEEEEcCCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCC
Q 048718 583 ----QSYKRIIGFVPQDD--IVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-HIRDSLVGTVEKRGIS 655 (1118)
Q Consensus 583 ----~~~r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-~~~dt~vg~~~~rgLS 655 (1118)
..+++.++|++|++ .+++.+|+.|++.+..... ......+....++++++.+||. +..++.++. ||
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~-----LS 153 (268)
T PRK10419 81 RAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKRPPQ-----LS 153 (268)
T ss_pred hhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCCCcc-----CC
Confidence 23567899999997 4667799999998754321 1223344455789999999996 567776655 99
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEE
Q 048718 656 GGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIV 734 (1118)
Q Consensus 656 GGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv 734 (1118)
|||||||+||+||+.+|+||||||||+|||+.++..+.+.|++++++ |.|+|++||+++. +.+++|++++|.+ |+++
T Consensus 154 ~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~-i~~~~d~i~~l~~-G~i~ 231 (268)
T PRK10419 154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRL-VERFCQRVMVMDN-GQIV 231 (268)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHH-HHHhCCEEEEEEC-CEEe
Confidence 99999999999999999999999999999999999999999998865 8999999999875 4578999999975 6899
Q ss_pred EecChhhH
Q 048718 735 YHGPVKKV 742 (1118)
Q Consensus 735 ~~G~~~~l 742 (1118)
+.|+++++
T Consensus 232 ~~g~~~~~ 239 (268)
T PRK10419 232 ETQPVGDK 239 (268)
T ss_pred eeCChhhc
Confidence 99998775
No 204
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=3.9e-38 Score=331.81 Aligned_cols=186 Identities=52% Similarity=0.902 Sum_probs=164.8
Q ss_pred EEEEEeEEEEEcCC----cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCceeEEEECCEecChhhh
Q 048718 512 EVAFKDLTITLKGK----NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRV--PGCIMSGTILVNGKVASIQSY 585 (1118)
Q Consensus 512 ~l~~knLs~~~~~~----~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~--~~~~~sG~I~inG~~~~~~~~ 585 (1118)
.++++||++.|... .+++|+|+|++|++||+++|+||||||||||+++|+|++ + +.+|+|.++|+++....+
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~~~~~~~~ 80 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGRPLDKRSF 80 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCEeCchHhh
Confidence 57899999999632 267999999999999999999999999999999999998 7 689999999998754456
Q ss_pred cCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 048718 586 KRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVG 665 (1118)
Q Consensus 586 r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIA 665 (1118)
++.++|++|++.+++.+||+||+.+..... .|||||||||+||
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~~qrv~la 123 (194)
T cd03213 81 RKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGERKRVSIA 123 (194)
T ss_pred hheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHHHHHHHHH
Confidence 778999999999999999999998753210 3999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEec
Q 048718 666 LEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHG 737 (1118)
Q Consensus 666 rALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G 737 (1118)
|||+.+|++|||||||+|||+.++..+.+.|+++.++|+|+|+++|+++..+.+.+|++++|.+ |++++.|
T Consensus 124 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 124 LELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999998877999999999987556678999999976 6887754
No 205
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-38 Score=349.07 Aligned_cols=219 Identities=26% Similarity=0.385 Sum_probs=181.5
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--C-CCceeEEEECCEecCh-----
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVP--G-CIMSGTILVNGKVASI----- 582 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~--~-~~~sG~I~inG~~~~~----- 582 (1118)
..+.++||++.|. ++.+|+|+||+|++||+++|+|||||||||||++|+|+.+ + .+++|+|.++|.++..
T Consensus 38 ~~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 38 PHVVAKNFSIYYG--EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred eEEEEeeeEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 3588999999994 3579999999999999999999999999999999999853 1 1379999999987531
Q ss_pred hhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccCCCCCHHH
Q 048718 583 QSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ----HIRDSLVGTVEKRGISGGQ 658 (1118)
Q Consensus 583 ~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~----~~~dt~vg~~~~rgLSGGE 658 (1118)
..+++.++|++|++.+++. ||.|||.++...+. .......+..+.++++.+|+. +..++.++ .|||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~-----~LSgGq 187 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDRLDKNAL-----GLSGGQ 187 (286)
T ss_pred HHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhHhhCChh-----hCCHHH
Confidence 2356789999999988875 99999998754321 112223345677888888874 34455554 499999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecC
Q 048718 659 RKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGP 738 (1118)
Q Consensus 659 RQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~ 738 (1118)
||||+|||||+.+|++|||||||+|||+.++..+.+.|++++. +.|||+++|+++. +.+.+|++++|.+ |++++.|+
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~-~~~~~d~i~~L~~-G~i~~~g~ 264 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQ-ASRVSDYTMFFYE-GVLVEHAP 264 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEeCC
Confidence 9999999999999999999999999999999999999998865 6899999999875 4578999999976 68999999
Q ss_pred hhhH
Q 048718 739 VKKV 742 (1118)
Q Consensus 739 ~~~l 742 (1118)
.+++
T Consensus 265 ~~~~ 268 (286)
T PRK14275 265 TAQL 268 (286)
T ss_pred HHHH
Confidence 8775
No 206
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-38 Score=345.56 Aligned_cols=219 Identities=25% Similarity=0.350 Sum_probs=183.1
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCceeEEEECCEecCh-----
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPG---CIMSGTILVNGKVASI----- 582 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~---~~~sG~I~inG~~~~~----- 582 (1118)
..++++|+++.|. ++.+|+|+||+|++||+++|+||||||||||+++|+|++++ .+++|+|.++|.++..
T Consensus 24 ~~l~~~nl~~~~~--~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 24 TALEVRNLNLFYG--DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred cEEEEEEEEEEEC--CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 3589999999994 35799999999999999999999999999999999999863 1479999999987642
Q ss_pred hhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHH
Q 048718 583 QSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH----IRDSLVGTVEKRGISGGQ 658 (1118)
Q Consensus 583 ~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~----~~dt~vg~~~~rgLSGGE 658 (1118)
..+++.++|++|++.+++. ||+||+.+..... ....+...++.++++++.+++.+ ..++.+. .|||||
T Consensus 102 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-----~LS~Gq 173 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQ--GINNRRVLDEAVERSLRGAALWDEVKDRLHENAF-----GLSGGQ 173 (272)
T ss_pred HHHhccEEEEecCCccCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcc-----cCCHHH
Confidence 2456789999999988886 9999998875432 11122233456788899999863 3444444 599999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecC
Q 048718 659 RKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGP 738 (1118)
Q Consensus 659 RQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~ 738 (1118)
||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ +.|||++||+++. +.+.+|++++|.+ |++++.|+
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~-~~~~~d~i~~l~~-G~i~~~g~ 250 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQQ-AARVSDYTAFMYM-GKLVEYGD 250 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHH-HHhhCCEEEEEEC-CEEEecCC
Confidence 9999999999999999999999999999999999999999975 7899999999875 4578999999976 68999998
Q ss_pred hhhH
Q 048718 739 VKKV 742 (1118)
Q Consensus 739 ~~~l 742 (1118)
.+++
T Consensus 251 ~~~~ 254 (272)
T PRK14236 251 TDTL 254 (272)
T ss_pred HHHH
Confidence 8765
No 207
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-38 Score=355.68 Aligned_cols=225 Identities=23% Similarity=0.339 Sum_probs=186.0
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCceeEEEECCEecCh-----
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPG---CIMSGTILVNGKVASI----- 582 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~---~~~sG~I~inG~~~~~----- 582 (1118)
..|+++|++++|..+.+.+|+|+||+|++||+++|+|||||||||||++|+|+.+. .+++|+|.++|+++..
T Consensus 79 ~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~ 158 (329)
T PRK14257 79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISS 158 (329)
T ss_pred ceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 46899999999964446799999999999999999999999999999999999852 2468999999998742
Q ss_pred hhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 048718 583 QSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPK-AEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKR 661 (1118)
Q Consensus 583 ~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~-~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQR 661 (1118)
..+++.++||||++.+++ .||+|||.|+.... .... ....+.+.++++.++|.+..++.+++ ....||||||||
T Consensus 159 ~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~-~~~~LSgGqkqR 233 (329)
T PRK14257 159 LELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDK-AGNALSGGQQQR 233 (329)
T ss_pred HhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhC-CcccCCHHHHHH
Confidence 346788999999999885 79999999875321 1222 22234467888888885433333332 345699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhh
Q 048718 662 VNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKK 741 (1118)
Q Consensus 662 VsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~ 741 (1118)
|+|||||+.+|+||||||||+|||+.+...+.+.|+.+.+ ++|||++||+++. +.+.+|++++|.+ |++++.|++++
T Consensus 234 l~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~-i~~~~Driivl~~-G~i~e~g~~~~ 310 (329)
T PRK14257 234 LCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMAQ-AQRISDETVFFYQ-GWIEEAGETKT 310 (329)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEeCCHHH
Confidence 9999999999999999999999999999999999998865 6999999999875 4577999999976 69999999988
Q ss_pred HH
Q 048718 742 VE 743 (1118)
Q Consensus 742 l~ 743 (1118)
+.
T Consensus 311 l~ 312 (329)
T PRK14257 311 IF 312 (329)
T ss_pred Hh
Confidence 73
No 208
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-38 Score=346.09 Aligned_cols=218 Identities=21% Similarity=0.333 Sum_probs=179.5
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCceeEEEECCEecC-----hh
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPG---CIMSGTILVNGKVAS-----IQ 583 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~---~~~sG~I~inG~~~~-----~~ 583 (1118)
.++++||++.|. ++.+|+|+||+|++||+++|+|+|||||||||++|+|+++. .+++|+|.++|+++. ..
T Consensus 24 ~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 101 (271)
T PRK14238 24 VFDTQNLNLWYG--EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVE 101 (271)
T ss_pred EEEEeeeEEEEC--CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHH
Confidence 589999999995 35799999999999999999999999999999999999851 147999999998763 12
Q ss_pred hhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC----CccccccccCccCCCCCHHHH
Q 048718 584 SYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGL----QHIRDSLVGTVEKRGISGGQR 659 (1118)
Q Consensus 584 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL----~~~~dt~vg~~~~rgLSGGER 659 (1118)
.+++.++|++|++.+++ .||+||+.++...+ ...........+.++++.+++ .+..++.++ .||||||
T Consensus 102 ~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~-----~LSgGe~ 173 (271)
T PRK14238 102 ELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIH--GIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAY-----GLSGGQQ 173 (271)
T ss_pred HHhhhEEEEecCCcccc-ccHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcc-----cCCHHHH
Confidence 45678999999998887 59999999875432 111222233456777777754 333455444 5999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecCh
Q 048718 660 KRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPV 739 (1118)
Q Consensus 660 QRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~ 739 (1118)
|||+|||+|+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|+++. +.+.+|++++|.+ |++++.|+.
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~-i~~~~d~i~~l~~-G~i~~~g~~ 250 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQ-AARISDKTAFFLN-GYVNEYDDT 250 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHH-HHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999865 7999999999875 4578999999976 689999998
Q ss_pred hhH
Q 048718 740 KKV 742 (1118)
Q Consensus 740 ~~l 742 (1118)
+++
T Consensus 251 ~~~ 253 (271)
T PRK14238 251 DKI 253 (271)
T ss_pred HHH
Confidence 765
No 209
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-38 Score=348.05 Aligned_cols=220 Identities=24% Similarity=0.432 Sum_probs=180.8
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEE
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGF 591 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 591 (1118)
.++++||++.|+ +++.+|+|+||+|++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.....++.++|
T Consensus 6 ~l~~~~l~~~~~-~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~i~~ 82 (272)
T PRK15056 6 GIVVNDVTVTWR-NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPTRQALQKNLVAY 82 (272)
T ss_pred eEEEEeEEEEec-CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEhHHhhccceEEE
Confidence 488999999995 23679999999999999999999999999999999999998 689999999987643222346999
Q ss_pred EcCCCCCC--CCCCHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 048718 592 VPQDDIVH--GNLTVEENLWFSARCRLS-ADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEM 668 (1118)
Q Consensus 592 V~Qd~~l~--~~LTV~EnL~f~a~lr~~-~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArAL 668 (1118)
++|++.+. ...++++++.++...... ...........++++++.+||.+..++.+++ |||||||||+||+||
T Consensus 83 v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LSgG~~qrv~laraL 157 (272)
T PRK15056 83 VPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGE-----LSGGQKKRVFLARAI 157 (272)
T ss_pred eccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCccc-----CCHHHHHHHHHHHHH
Confidence 99997652 234789998764211000 0111122334578899999999888888876 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 669 VMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 669 l~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
+.+|+||+|||||+|||+.++..+.+.|++++++|+|||+++|+++. +.+.+|+++++ + |++++.|+++++
T Consensus 158 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~-~~~~~d~v~~~-~-G~i~~~g~~~~~ 228 (272)
T PRK15056 158 AQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGS-VTEFCDYTVMV-K-GTVLASGPTETT 228 (272)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEE-C-CEEEeecCHHhc
Confidence 99999999999999999999999999999998779999999999875 45789998666 5 689999988765
No 210
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=2.2e-38 Score=341.95 Aligned_cols=199 Identities=28% Similarity=0.401 Sum_probs=170.2
Q ss_pred eeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHHHHH
Q 048718 530 MRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLW 609 (1118)
Q Consensus 530 L~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~ 609 (1118)
|+|+||+|++||+++|+||||||||||+++|+|+++ +++|+|.++|.++... ....+|++|++.+++.+||.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~--~~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEP--GPDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCC--ChhheEEecCcccCCCCCHHHHHH
Confidence 579999999999999999999999999999999997 6899999999876432 123589999999999999999998
Q ss_pred HHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048718 610 FSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSS 689 (1118)
Q Consensus 610 f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa 689 (1118)
+...... ......+...+++++++.+||.+..++.+++ |||||||||+||++|+.+|++|||||||+|||+.++
T Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVL-PDLSKSERRAIVEEHIALVGLTEAADKRPGQ-----LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHHcCCHHHHcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 8643111 1233344455688999999999888887765 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 690 QLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 690 ~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
..+.+.|++++++ |+|||++||+++. +.+.+|++++|.+ |++++.|+..
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~~-~~~~~d~v~~l~~-G~i~~~~~~~ 200 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVDE-ALLLSDRVVMLTN-GPAANIGQIL 200 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCEEEEEeC-CcEecccCce
Confidence 9999999998764 8999999999875 5678999999976 6888887654
No 211
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=2e-38 Score=384.21 Aligned_cols=217 Identities=25% Similarity=0.420 Sum_probs=184.1
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcC
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKR 587 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 587 (1118)
..++++||+++|+++++++|+|+|++|++||.++|+|+||||||||+++|+|+++ |.+|+|.+||.+++ ...+++
T Consensus 340 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~~~~~~~~~~ 417 (582)
T PRK11176 340 GDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD--IDEGEILLDGHDLRDYTLASLRN 417 (582)
T ss_pred CeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC--CCCceEEECCEEhhhcCHHHHHh
Confidence 3599999999997555789999999999999999999999999999999999998 68999999998864 346788
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCCCCCHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGL-------QHIRDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL-------~~~~dt~vg~~~~rgLSGGERQ 660 (1118)
.|+||||++.+|+. |++|||.++.. ....+++ +.++++..|+ .+..||.+|+ ....|||||||
T Consensus 418 ~i~~v~Q~~~lf~~-Ti~~Ni~~~~~----~~~~~~~----i~~al~~~~l~~~i~~lp~Gldt~ig~-~g~~LSGGqrQ 487 (582)
T PRK11176 418 QVALVSQNVHLFND-TIANNIAYART----EQYSREQ----IEEAARMAYAMDFINKMDNGLDTVIGE-NGVLLSGGQRQ 487 (582)
T ss_pred hceEEccCceeecc-hHHHHHhcCCC----CCCCHHH----HHHHHHHhCcHHHHHhcccccCceeCC-CCCcCCHHHHH
Confidence 99999999999964 99999987531 1122322 4445555543 4456888886 45679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
|++|||||+++|+||+|||||++||+.++..+++.|+++. +++|+|+|||+++. .+.+|++++|++ |++++.|+.+
T Consensus 488 Ri~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~~--~~~~D~Ii~l~~-g~i~e~g~~~ 563 (582)
T PRK11176 488 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLST--IEKADEILVVED-GEIVERGTHA 563 (582)
T ss_pred HHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchHH--HHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999999999999999998874 47999999999863 478999999976 6999999988
Q ss_pred hHH
Q 048718 741 KVE 743 (1118)
Q Consensus 741 ~l~ 743 (1118)
++.
T Consensus 564 ~l~ 566 (582)
T PRK11176 564 ELL 566 (582)
T ss_pred HHH
Confidence 764
No 212
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=3.8e-38 Score=375.80 Aligned_cols=220 Identities=23% Similarity=0.362 Sum_probs=185.6
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---h-hhcCe
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---Q-SYKRI 588 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~-~~r~~ 588 (1118)
++++||+++|. ++++|+||||++++||+++|+|||||||||||++|+|+.++.+++|+|.++|+++.. . ..++.
T Consensus 2 l~i~~l~~~~~--~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFG--GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeC--CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 67899999994 467999999999999999999999999999999999998732369999999987642 1 13467
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhccCC-CCCHHHHHHHHHHHHHHcCCCccc-cccccCccCCCCCHHHHHHHHHHH
Q 048718 589 IGFVPQDDIVHGNLTVEENLWFSARCRLSA-DLPKAEKVLVVERVIESLGLQHIR-DSLVGTVEKRGISGGQRKRVNVGL 666 (1118)
Q Consensus 589 IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~-~~~~~~~~~~v~~lL~~lgL~~~~-dt~vg~~~~rgLSGGERQRVsIAr 666 (1118)
+|||||++.+++.+||.||+.++....... .....+...+++++++.+||.+.. ++.+++ |||||||||+||+
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgG~~qrv~iA~ 154 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGD-----YGGGQQQLVEIAK 154 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhh-----CCHHHHHHHHHHH
Confidence 999999999999999999999875432111 122333445688999999998754 455665 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhh
Q 048718 667 EMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKK 741 (1118)
Q Consensus 667 ALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~ 741 (1118)
||+.+|+||||||||+|||+.++..+.+.|++++++|.|||++||+++. +.+.+|++++|.+ |++++.|++++
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~-~~~~~d~i~~l~~-G~i~~~~~~~~ 227 (500)
T TIGR02633 155 ALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNE-VKAVCDTICVIRD-GQHVATKDMST 227 (500)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHH-HHHhCCEEEEEeC-CeEeeecCccc
Confidence 9999999999999999999999999999999998789999999999875 4578999999976 68998888754
No 213
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=6.2e-38 Score=342.23 Aligned_cols=218 Identities=25% Similarity=0.334 Sum_probs=180.3
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEe-----cCh---h
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKV-----ASI---Q 583 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~-----~~~---~ 583 (1118)
.++++||++.|+ ++.+|+|+||+|++||+++|+|||||||||||++|+|+.+ +.+|+|.++|++ +.. .
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~ 78 (253)
T TIGR02323 3 LLQVSGLSKSYG--GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSGAELELYQLSEA 78 (253)
T ss_pred eEEEeeeEEEeC--CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEecccccccccccCCHH
Confidence 478999999994 3579999999999999999999999999999999999998 689999999975 321 1
Q ss_pred ----hhcCeEEEEcCCCC--CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCH
Q 048718 584 ----SYKRIIGFVPQDDI--VHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-HIRDSLVGTVEKRGISG 656 (1118)
Q Consensus 584 ----~~r~~IgyV~Qd~~--l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-~~~dt~vg~~~~rgLSG 656 (1118)
..++.++|++|++. +++.+|+.||+.+..... . ..........++++++.+|+. +..++.+.+ |||
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-----LSg 151 (253)
T TIGR02323 79 ERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDDLPRA-----FSG 151 (253)
T ss_pred HHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhcCchh-----cCH
Confidence 12456999999974 456679999997653211 1 111122345678999999997 466776655 999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEE
Q 048718 657 GQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVY 735 (1118)
Q Consensus 657 GERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~ 735 (1118)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|+++. +.+.+|++++|.+ |++++
T Consensus 152 G~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~-~~~~~d~~~~l~~-G~i~~ 229 (253)
T TIGR02323 152 GMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGV-ARLLAQRLLVMQQ-GRVVE 229 (253)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998754 8999999999875 4568999999976 68999
Q ss_pred ecChhhH
Q 048718 736 HGPVKKV 742 (1118)
Q Consensus 736 ~G~~~~l 742 (1118)
.|+.+++
T Consensus 230 ~~~~~~~ 236 (253)
T TIGR02323 230 SGLTDQV 236 (253)
T ss_pred ECCHHHH
Confidence 9988765
No 214
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=2.8e-38 Score=339.83 Aligned_cols=210 Identities=23% Similarity=0.366 Sum_probs=176.0
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcCe
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKRI 588 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~ 588 (1118)
.|+++||++.|. ++++|+|+||+|++||+++|+|||||||||||++|+|+.+ +++|+|.++|.++.. ..+++.
T Consensus 7 ~i~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~ 82 (225)
T PRK10247 7 LLQLQNVGYLAG--DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDISTLKPEIYRQQ 82 (225)
T ss_pred eEEEeccEEeeC--CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEcCcCCHHHHHhc
Confidence 588999999994 4679999999999999999999999999999999999987 689999999987532 235678
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHHHHHHH
Q 048718 589 IGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-HIRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 589 IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-~~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
++|++|++.+++ .||+||+.+....+. ... ....++++++.+||. ...++.+.+ |||||||||+||+|
T Consensus 83 i~~~~q~~~l~~-~tv~enl~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~~-----LS~G~~qrv~lara 151 (225)
T PRK10247 83 VSYCAQTPTLFG-DTVYDNLIFPWQIRN---QQP--DPAIFLDDLERFALPDTILTKNIAE-----LSGGEKQRISLIRN 151 (225)
T ss_pred cEEEeccccccc-ccHHHHHHhHHhhcC---CCh--HHHHHHHHHHHcCCChHHhcCCccc-----CCHHHHHHHHHHHH
Confidence 999999998887 499999988654321 111 123577899999996 466777665 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecC
Q 048718 668 MVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGP 738 (1118)
Q Consensus 668 Ll~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~ 738 (1118)
|+.+|++|||||||+|||+.++..+.+.|+++.++ |.|||+++|+++. + +.+|++++|.+.+..+.+|.
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 152 LQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCEEEEEecccchHhhhh
Confidence 99999999999999999999999999999998764 8999999999875 3 46999999964333455553
No 215
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1e-38 Score=386.14 Aligned_cols=218 Identities=29% Similarity=0.489 Sum_probs=186.1
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcC
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKR 587 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 587 (1118)
..++|+||+|.|++ ++++|+|+||++++||.+||+||||||||||+++|.|+++ +.+|+|.+||.+++ ...+|+
T Consensus 327 ~~I~f~~vsf~y~~-~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~--~~~G~I~idg~dI~~i~~~~lr~ 403 (567)
T COG1132 327 GSIEFENVSFSYPG-KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSGEILIDGIDIRDISLDSLRK 403 (567)
T ss_pred CeEEEEEEEEEcCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCEehhhcCHHHHHH
Confidence 45999999999953 5789999999999999999999999999999999999998 68999999998864 457899
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHH-----HHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEK-----VLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRV 662 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~-----~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRV 662 (1118)
.|+||+||+.+|. -||+|||.++... .++++. ...+++.++.+ .+..||.+|+ ....||||||||+
T Consensus 404 ~I~~V~Qd~~LF~-~TI~~NI~~g~~~-----at~eei~~a~k~a~~~d~I~~l--p~g~dt~vge-~G~~LSgGQrQrl 474 (567)
T COG1132 404 RIGIVSQDPLLFS-GTIRENIALGRPD-----ATDEEIEEALKLANAHEFIANL--PDGYDTIVGE-RGVNLSGGQRQRL 474 (567)
T ss_pred hccEEcccceeec-ccHHHHHhcCCCC-----CCHHHHHHHHHHhChHHHHHhC--cccccceecC-CCccCCHHHHHHH
Confidence 9999999999997 6999999998531 233332 22234444443 5568999984 5567999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 663 NVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 663 sIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
+|||||+++|+||+||||||+||+.+...+.+.|+++. +|+|+|+++|+++. + +.+|+++||++ |++++.|+.+++
T Consensus 475 aiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst-i-~~aD~IiVl~~-G~i~e~G~h~eL 550 (567)
T COG1132 475 AIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST-I-KNADRIIVLDN-GRIVERGTHEEL 550 (567)
T ss_pred HHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH-H-HhCCEEEEEEC-CEEEEecCHHHH
Confidence 99999999999999999999999999999999999776 67899999999974 3 56999999986 689999999988
Q ss_pred HH
Q 048718 743 EE 744 (1118)
Q Consensus 743 ~~ 744 (1118)
..
T Consensus 551 l~ 552 (567)
T COG1132 551 LA 552 (567)
T ss_pred HH
Confidence 54
No 216
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.5e-38 Score=333.24 Aligned_cols=199 Identities=24% Similarity=0.316 Sum_probs=170.3
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh--hhhcCeEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI--QSYKRIIG 590 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~Ig 590 (1118)
++++||+++|. ++.+|+|+||+|++||+++|+||||||||||+++|+|+++ +++|+|.++|.++.. ..+++.++
T Consensus 2 l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~~~~~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERD--ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIRRQRDEYHQDLL 77 (204)
T ss_pred eEEEEEEEEEC--CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcccchHHhhhheE
Confidence 67899999994 3679999999999999999999999999999999999998 689999999987632 24567899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
|++|++.+++.+||.||+.+....+ .. .....++++++.+||.+..++.+.+ |||||||||+||+||++
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~---~~---~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrl~la~al~~ 146 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLH---GP---GDDEALWEALAQVGLAGFEDVPVRQ-----LSAGQQRRVALARLWLT 146 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhc---Cc---cHHHHHHHHHHHcCCHHHhhCChhh-----cCHHHHHHHHHHHHHhc
Confidence 9999999999999999999876432 11 1234578999999998877877765 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEE
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILL 727 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL 727 (1118)
+|++|+|||||+|||+.++..+.+.|++++++|.|||++||+++. +...-++++++
T Consensus 147 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-i~~~~~~~~~~ 202 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLP-VASDKVRKLRL 202 (204)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhh-hccCCceEEec
Confidence 999999999999999999999999999988778999999999875 33433444444
No 217
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.7e-38 Score=334.51 Aligned_cols=202 Identities=24% Similarity=0.316 Sum_probs=176.6
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEE
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIG 590 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 590 (1118)
..++++|+++.|. ++.+|+++||+|++||+++|+||||||||||+++|+|+++ +++|+|.++|+++.....++.++
T Consensus 10 ~~l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i~~~~~~~~i~ 85 (214)
T PRK13543 10 PLLAAHALAFSRN--EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTATRGDRSRFMA 85 (214)
T ss_pred ceEEEeeEEEecC--CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEccchhhhhceE
Confidence 3589999999984 3579999999999999999999999999999999999998 68999999998765433456799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
|++|++.+++.+|+.||+.+....+ ... ....++++++.++|.+..++.+++ |||||||||+|||+|+.
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~---~~~---~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~ 154 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLH---GRR---AKQMPGSALAIVGLAGYEDTLVRQ-----LSAGQKKRLALARLWLS 154 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhc---CCc---HHHHHHHHHHHcCChhhccCChhh-----CCHHHHHHHHHHHHHhc
Confidence 9999999999899999998875432 111 223467889999998888887765 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEe
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLA 728 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~ 728 (1118)
+|++|+|||||+|||+.++..+.+.|++++++|.|+|++||+++. +.+.+|++++|.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~~~i~~l~ 211 (214)
T PRK13543 155 PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYA-APPVRTRMLTLE 211 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhh-hhhhcceEEEEe
Confidence 999999999999999999999999999988889999999999975 568999999885
No 218
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-38 Score=341.38 Aligned_cols=214 Identities=26% Similarity=0.457 Sum_probs=171.1
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcCe
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKRI 588 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 588 (1118)
.++++|+++.|. +.+.+|+|+||+|++||+++|+|||||||||||++|+|+++ +.+|+|.++|.++. ...+++.
T Consensus 2 ~l~~~~l~~~~~-~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 2 EIEFENVNFSYD-EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred eEEEEEEEEecC-CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeHHHcCHHHHhhh
Confidence 478999999995 23469999999999999999999999999999999999997 68999999998753 2345677
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCccCCCCCHHHHHH
Q 048718 589 IGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKV-----LVVERVIESL--GLQHIRDSLVGTVEKRGISGGQRKR 661 (1118)
Q Consensus 589 IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~-----~~v~~lL~~l--gL~~~~dt~vg~~~~rgLSGGERQR 661 (1118)
++|++|++.+++. ||+||+.+.... ....... ..+++.++.+ |+.+..+..+ +.||||||||
T Consensus 79 i~~~~q~~~~~~~-tv~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~LS~G~~~r 147 (229)
T cd03254 79 IGVVLQDTFLFSG-TIMENIRLGRPN-----ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENG-----GNLSQGERQL 147 (229)
T ss_pred EEEecCCchhhhh-HHHHHHhccCCC-----CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCC-----CcCCHHHHHH
Confidence 9999999988875 999999875321 1111110 0122333333 3433333333 4599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhh
Q 048718 662 VNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKK 741 (1118)
Q Consensus 662 VsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~ 741 (1118)
|+||++|+.+|++|||||||+|||+.++..+.+.|+++. +|+|||++||+++. + ..+|++++|.+ |++++.|+.++
T Consensus 148 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~i~~l~~-g~~~~~~~~~~ 223 (229)
T cd03254 148 LAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLST-I-KNADKILVLDD-GKIIEEGTHDE 223 (229)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H-hhCCEEEEEeC-CeEEEeCCHHH
Confidence 999999999999999999999999999999999999885 58999999999875 3 46999999976 68999888766
Q ss_pred HH
Q 048718 742 VE 743 (1118)
Q Consensus 742 l~ 743 (1118)
+.
T Consensus 224 ~~ 225 (229)
T cd03254 224 LL 225 (229)
T ss_pred HH
Confidence 53
No 219
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=9.2e-39 Score=395.89 Aligned_cols=214 Identities=29% Similarity=0.433 Sum_probs=182.4
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcC
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKR 587 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 587 (1118)
..|+++||+|+|++.++++|+|+|++|++||.+||+||||||||||+|+|+|+++ |.+|+|.+||.++. ...+|+
T Consensus 476 ~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i~~~~~~~lr~ 553 (710)
T TIGR03796 476 GYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ--PWSGEILFDGIPREEIPREVLAN 553 (710)
T ss_pred CeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEeHHHCCHHHHHh
Confidence 4699999999997555789999999999999999999999999999999999998 68999999998863 356899
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCCCHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-------HIRDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-------~~~dt~vg~~~~rgLSGGERQ 660 (1118)
.||||+|++.+|+ .|++|||.++.. +.++++ +.++++..|+. ...||.+|+ ....|||||||
T Consensus 554 ~i~~v~Q~~~lf~-gTi~eNi~l~~~-----~~~~~~----i~~al~~~~l~~~i~~lp~gl~t~i~e-~G~~LSGGQrQ 622 (710)
T TIGR03796 554 SVAMVDQDIFLFE-GTVRDNLTLWDP-----TIPDAD----LVRACKDAAIHDVITSRPGGYDAELAE-GGANLSGGQRQ 622 (710)
T ss_pred heeEEecCChhhh-ccHHHHhhCCCC-----CCCHHH----HHHHHHHhCCHHHHHhCcCcccceecc-CCCCCCHHHHH
Confidence 9999999999996 499999987521 223322 44455555543 346777876 45679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
|++|||||+++|+|||||||||+||+.++..+.+.|++ .++|+|+++|+++. .+.+|++++|++ |++++.|+.+
T Consensus 623 RiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~--i~~~D~Iivl~~-G~i~~~G~~~ 696 (710)
T TIGR03796 623 RLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLST--IRDCDEIIVLER-GKVVQRGTHE 696 (710)
T ss_pred HHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHH--HHhCCEEEEEeC-CEEEEecCHH
Confidence 99999999999999999999999999999999999975 48999999999874 467999999976 6999999998
Q ss_pred hHH
Q 048718 741 KVE 743 (1118)
Q Consensus 741 ~l~ 743 (1118)
++.
T Consensus 697 ~Ll 699 (710)
T TIGR03796 697 ELW 699 (710)
T ss_pred HHH
Confidence 875
No 220
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-38 Score=383.07 Aligned_cols=222 Identities=26% Similarity=0.349 Sum_probs=189.9
Q ss_pred eEEEEEeEEEEEcCC---------cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC
Q 048718 511 IEVAFKDLTITLKGK---------NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS 581 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~---------~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~ 581 (1118)
..|+++||++.|... .+.+|+||||+|++||+++|+|+||||||||+|+|+|+++ +++|+|.++|+++.
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i~ 389 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRID 389 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEECC
Confidence 358999999999521 2469999999999999999999999999999999999998 68999999998763
Q ss_pred h------hhhcCeEEEEcCCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCC
Q 048718 582 I------QSYKRIIGFVPQDD--IVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-HIRDSLVGTVEKR 652 (1118)
Q Consensus 582 ~------~~~r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-~~~dt~vg~~~~r 652 (1118)
. ..+++.|+||||++ .+++.+||.||+.+....+ ......+..+++.++|+.+||. +..++++++
T Consensus 390 ~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~---- 463 (623)
T PRK10261 390 TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVH--GLLPGKAAAARVAWLLERVGLLPEHAWRYPHE---- 463 (623)
T ss_pred cCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcCCCHHHhhCCccc----
Confidence 2 12467899999997 5888999999999875432 1112334456788999999996 567777766
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCc
Q 048718 653 GISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGG 731 (1118)
Q Consensus 653 gLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG 731 (1118)
|||||||||+|||||+.+|+||||||||+|||+.++..++++|++++++ |.|||++|||++. +.+++|++++|.+ |
T Consensus 464 -LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~-v~~~~dri~vl~~-G 540 (623)
T PRK10261 464 -FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAV-VERISHRVAVMYL-G 540 (623)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-C
Confidence 9999999999999999999999999999999999999999999999865 9999999999986 4578999999976 6
Q ss_pred EEEEecChhhHH
Q 048718 732 VIVYHGPVKKVE 743 (1118)
Q Consensus 732 ~iv~~G~~~~l~ 743 (1118)
++++.|+++++.
T Consensus 541 ~iv~~g~~~~i~ 552 (623)
T PRK10261 541 QIVEIGPRRAVF 552 (623)
T ss_pred EEEEecCHHHHh
Confidence 999999988763
No 221
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=2e-38 Score=338.72 Aligned_cols=210 Identities=29% Similarity=0.473 Sum_probs=173.4
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcCe
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKRI 588 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~ 588 (1118)
.++++||++.|.++.+.+|+|+||+|++||+++|+|||||||||||++|+|+.+ +++|+|.++|.++.. ..+++.
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEhHHCCHHHHHhh
Confidence 378999999995333579999999999999999999999999999999999987 689999999987532 235668
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CccCCCCCHHHHHHH
Q 048718 589 IGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVG------TVEKRGISGGQRKRV 662 (1118)
Q Consensus 589 IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg------~~~~rgLSGGERQRV 662 (1118)
++|++|++.+++ .||.||+.+.... .. ...+.++++.++|.+..++.+. ......|||||||||
T Consensus 80 i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl 149 (220)
T cd03245 80 IGYVPQDVTLFY-GTLRDNITLGAPL-----AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAV 149 (220)
T ss_pred EEEeCCCCcccc-chHHHHhhcCCCC-----CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHH
Confidence 999999998886 6999999875311 11 1235677888888776665432 012346999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEec
Q 048718 663 NVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHG 737 (1118)
Q Consensus 663 sIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G 737 (1118)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++ .|||++||+++. + +.+|++++|.+ |++++.|
T Consensus 150 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~-~-~~~d~v~~l~~-g~i~~~~ 220 (220)
T cd03245 150 ALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSL-L-DLVDRIIVMDS-GRIVADG 220 (220)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHH-H-HhCCEEEEEeC-CeEeecC
Confidence 9999999999999999999999999999999999998754 899999999874 4 78999999976 6777654
No 222
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-37 Score=345.24 Aligned_cols=220 Identities=21% Similarity=0.270 Sum_probs=181.5
Q ss_pred ceEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEecCh----
Q 048718 510 TIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC---IMSGTILVNGKVASI---- 582 (1118)
Q Consensus 510 ~~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~~~---- 582 (1118)
...|.++||++.|. ++.+|+|+||+|++||+++|+|||||||||||++|+|+.++. +.+|+|.++|+++..
T Consensus 18 ~~~l~~~nl~~~~~--~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 18 HSVFEVEGVKVFYG--GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred CceEEEeeEEEEeC--CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 34689999999994 357999999999999999999999999999999999997532 258999999987531
Q ss_pred -hhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccCCCCCHH
Q 048718 583 -QSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ----HIRDSLVGTVEKRGISGG 657 (1118)
Q Consensus 583 -~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~----~~~dt~vg~~~~rgLSGG 657 (1118)
..+++.|+|++|++.+++. ||.||+.++...+ .... .....++++++.+++. +..++.+. .||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~-----~LSgG 165 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRAN---GYKG-NLDELVEDSLRRAAIWEEVKDKLKEKGT-----ALSGG 165 (274)
T ss_pred hHHHhhcEEEEccCCccccc-cHHHHHHhHHHhc---CchH-HHHHHHHHHHHHcccchhhHHHhcCCcc-----cCCHH
Confidence 2456789999999988874 9999999875432 1111 1223467778888874 33444444 59999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEe--------c
Q 048718 658 QRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLA--------K 729 (1118)
Q Consensus 658 ERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~--------~ 729 (1118)
|||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ +.|||+++|+++. +.+++|++++|. +
T Consensus 166 q~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~-~~~~~d~i~~l~~~~~~~~~~ 243 (274)
T PRK14265 166 QQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQQ-ASRVADWTAFFNTEIDEYGKR 243 (274)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-HHHhCCEEEEEeccccccccc
Confidence 99999999999999999999999999999999999999999864 6899999999975 568899999997 2
Q ss_pred CcEEEEecChhhHH
Q 048718 730 GGVIVYHGPVKKVE 743 (1118)
Q Consensus 730 GG~iv~~G~~~~l~ 743 (1118)
.|++++.|+++++.
T Consensus 244 ~G~~~~~g~~~~~~ 257 (274)
T PRK14265 244 RGKLVEFSPTEQMF 257 (274)
T ss_pred CceEEEeCCHHHHH
Confidence 57999999998763
No 223
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.6e-37 Score=338.62 Aligned_cols=223 Identities=21% Similarity=0.333 Sum_probs=181.2
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcC-
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKR- 587 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~- 587 (1118)
.++++||++.|. ++.+|+||||+|++||+++|+|+||||||||+++|+|+....+++|+|.++|.++.. ...++
T Consensus 7 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVN--ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeC--CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 588999999995 357999999999999999999999999999999999983111689999999987632 12222
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccC----CCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLS----ADLPKAEKVLVVERVIESLGLQ-HIRDSLVGTVEKRGISGGQRKRV 662 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~----~~~~~~~~~~~v~~lL~~lgL~-~~~dt~vg~~~~rgLSGGERQRV 662 (1118)
.++|++|++.+++.+|+.+++.+....... ......+....+.++++.+||. +..++.++. .|||||||||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~----~LSgG~~qrv 160 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNE----GFSGGEKKRN 160 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhcccccc----CCCHHHHHHH
Confidence 489999999999999999999876432110 0111222335678899999997 455665541 3999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhc-cCcEEEEecCcEEEEecChhh
Q 048718 663 NVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRM-FDDLILLAKGGVIVYHGPVKK 741 (1118)
Q Consensus 663 sIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~-~D~vivL~~GG~iv~~G~~~~ 741 (1118)
+||+||+.+|+||||||||+|||+.++..+.+.|++++++|.|||++||+++.. ... +|++++|.+ |++++.|+++.
T Consensus 161 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~-~~~~~d~i~~l~~-G~i~~~~~~~~ 238 (252)
T CHL00131 161 EILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLL-DYIKPDYVHVMQN-GKIIKTGDAEL 238 (252)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH-HhhhCCEEEEEeC-CEEEEecChhh
Confidence 999999999999999999999999999999999999887799999999998753 344 799999975 69999998874
Q ss_pred H
Q 048718 742 V 742 (1118)
Q Consensus 742 l 742 (1118)
+
T Consensus 239 ~ 239 (252)
T CHL00131 239 A 239 (252)
T ss_pred h
Confidence 3
No 224
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-38 Score=375.09 Aligned_cols=216 Identities=22% Similarity=0.356 Sum_probs=184.9
Q ss_pred EeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh----hhhcCeEEE
Q 048718 516 KDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI----QSYKRIIGF 591 (1118)
Q Consensus 516 knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r~~Igy 591 (1118)
+||++.|. ++++|+||||+|++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. ..+++.++|
T Consensus 2 ~nl~~~~~--~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 2 SNISKSFP--GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CceEEEeC--CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 57899984 4679999999999999999999999999999999999997 689999999987642 234567999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 048718 592 VPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVME 671 (1118)
Q Consensus 592 V~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~ 671 (1118)
|+|++.+++.+||+||+.++............+..++++++++.+||.+..++.+++ |||||||||+||+||+.+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~qrv~lA~al~~~ 152 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVAT-----LSVSQMQMIEIAKAFSYN 152 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhh-----CCHHHHHHHHHHHHHHhC
Confidence 999998999999999998864211110112333445688999999999888888776 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 672 PSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 672 P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
|+||||||||+|||+.++..+.+.|++++++|.|||++||+++. +.+.+|++++|.+ |++++.|+++++
T Consensus 153 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~-~~~~~d~i~~l~~-G~i~~~~~~~~~ 221 (491)
T PRK10982 153 AKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEE-IFQLCDEITILRD-GQWIATQPLAGL 221 (491)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEEEEEC-CEEEeecChhhC
Confidence 99999999999999999999999999998789999999999875 4578999999976 699999987664
No 225
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.1e-38 Score=322.24 Aligned_cols=211 Identities=27% Similarity=0.374 Sum_probs=183.3
Q ss_pred EEEEEeEEEEEcCC--cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh------h
Q 048718 512 EVAFKDLTITLKGK--NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI------Q 583 (1118)
Q Consensus 512 ~l~~knLs~~~~~~--~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------~ 583 (1118)
.|+++++++++... .-+||++|++.|++||.++|+|||||||||||-+|+|+.. +++|+|.+.|+++.. .
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~--~ssGeV~l~G~~L~~ldEd~rA 83 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPLHKLDEDARA 83 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC--CCCceEEEcCcchhhcCHHHHH
Confidence 47788888887532 3579999999999999999999999999999999999998 689999999987632 1
Q ss_pred hh-cCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 048718 584 SY-KRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRV 662 (1118)
Q Consensus 584 ~~-r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRV 662 (1118)
.+ .+.||||||...+.|+||..||+...+.++-. ...+......++|+.+||.+..+.++++ |||||+|||
T Consensus 84 ~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~HyP~q-----LSGGEQQRV 155 (228)
T COG4181 84 ALRARHVGFVFQSFHLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTHYPAQ-----LSGGEQQRV 155 (228)
T ss_pred HhhccceeEEEEeeeccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCcccccccCccc-----cCchHHHHH
Confidence 23 36799999999999999999999999887632 2233445678899999999988888876 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEE
Q 048718 663 NVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVY 735 (1118)
Q Consensus 663 sIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~ 735 (1118)
+||||++..|+|||.||||-+||..+...|.++|-.+..+ |.|.|++|||+..+ ..|+|.+-|.. |+++.
T Consensus 156 AiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA--~Rc~R~~r~~~-G~l~~ 226 (228)
T COG4181 156 ALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLA--ARCDRQLRLRS-GRLVE 226 (228)
T ss_pred HHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHH--Hhhhheeeeec-ceecc
Confidence 9999999999999999999999999999999999998754 99999999998754 78999999976 68764
No 226
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-38 Score=373.88 Aligned_cols=216 Identities=24% Similarity=0.343 Sum_probs=185.0
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh----hhhcC
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI----QSYKR 587 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r~ 587 (1118)
.++++||++.|. ++.+|+||||+|++||+++|+|||||||||||++|+|+++ +++|+|.++|+++.. ..+++
T Consensus 4 ~l~~~~l~~~~~--~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~ 79 (501)
T PRK11288 4 YLSFDGIGKTFP--GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEMRFASTTAALAA 79 (501)
T ss_pred eEEEeeeEEEEC--CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHHHHHhC
Confidence 488999999994 3579999999999999999999999999999999999997 689999999987632 23467
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
.|+||+|++.+++.+||.||+.++............+.+.+++++++.+||.+..++.+++ |||||||||+||++
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~qrv~lara 154 (501)
T PRK11288 80 GVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKY-----LSIGQRQMVEIAKA 154 (501)
T ss_pred CEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhh-----CCHHHHHHHHHHHH
Confidence 8999999999999999999999864211111122334455788999999998777777765 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecC
Q 048718 668 MVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGP 738 (1118)
Q Consensus 668 Ll~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~ 738 (1118)
|+.+|+||||||||+|||+.++..+.+.|++++++|.|||++||+++. +.+++|++++|.+ |+++..++
T Consensus 155 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~-~~~~~d~i~~l~~-G~i~~~~~ 223 (501)
T PRK11288 155 LARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEE-IFALCDAITVFKD-GRYVATFD 223 (501)
T ss_pred HHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEeecC
Confidence 999999999999999999999999999999998779999999999875 4578999999976 68877665
No 227
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=6.1e-38 Score=338.13 Aligned_cols=205 Identities=28% Similarity=0.394 Sum_probs=171.8
Q ss_pred eeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeEEEECCEecChhhh-cCeEEEEcCCCC--CCCCCC
Q 048718 529 LMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC--IMSGTILVNGKVASIQSY-KRIIGFVPQDDI--VHGNLT 603 (1118)
Q Consensus 529 IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~--~~sG~I~inG~~~~~~~~-r~~IgyV~Qd~~--l~~~LT 603 (1118)
+|+|+|++|++||+++|+||||||||||+|+|+|++++. +++|+|.++|+++..... ++.++|++|++. +++.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 589999999999999999999999999999999999721 179999999987643223 357999999984 556789
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC---ccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 048718 604 VEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ---HIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEP 680 (1118)
Q Consensus 604 V~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~---~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEP 680 (1118)
+.||+.+..... .........+++++++.+||. +..++.+++ |||||||||+|||||+.+|+|||||||
T Consensus 81 ~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-----LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSL---GKLSKQARALILEALEAVGLPDPEEVLKKYPFQ-----LSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHc---CccHHHHHHHHHHHHHHcCCCchHHHHhCChhh-----cCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999998765432 112233345688999999998 456666655 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 681 TSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 681 TsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
|+|||+.++..+.+.|++++++ |+|||+++|+++. +...+|++++|.+ |+++..|+++++.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~-G~i~~~~~~~~~~ 214 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGV-VARIADEVAVMDD-GRIVERGTVKEIF 214 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEeCCHHHHH
Confidence 9999999999999999999864 8999999999875 5678999999976 6899999987663
No 228
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-37 Score=341.37 Aligned_cols=222 Identities=23% Similarity=0.315 Sum_probs=183.2
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEecCh-----
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC---IMSGTILVNGKVASI----- 582 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~~~----- 582 (1118)
+.+.++++++.|. ++.+|+|+||+|++||+++|+|+||||||||+++|+|++++. +.+|+|+++|.++..
T Consensus 7 ~~~~~~~~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 7 IVMDCKLDKIFYG--NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred ceEEEEeEEEEeC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 4578899999883 467999999999999999999999999999999999998631 269999999987631
Q ss_pred hhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 048718 583 QSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRV 662 (1118)
Q Consensus 583 ~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRV 662 (1118)
..+++.++|++|++.++ .+||.||+.++...+. . ..+....++++++.++|.+..+...+ ...+.||||||||+
T Consensus 85 ~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~~LS~G~~qrv 158 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLK-VSGLSLSGGQQQRL 158 (261)
T ss_pred HhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhh-CCcccCCHHHHHHH
Confidence 23567899999999888 5899999998764321 1 12234568889999998643322221 13456999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEe-------cCcEEEE
Q 048718 663 NVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLA-------KGGVIVY 735 (1118)
Q Consensus 663 sIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~-------~GG~iv~ 735 (1118)
+|||||+++|+||||||||+|||+.++.++.+.|+++. ++.|||+++|+++. +.+.+|++++|. ++|++++
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~~-i~~~~d~v~~l~~~~~~~~~~G~i~~ 236 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQQ-AIRVADTTAFFSVDISQGTRTGYLVE 236 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHH-HHHhCCEEEEEecccccccCCceEEE
Confidence 99999999999999999999999999999999999985 47899999999875 558899999996 3579999
Q ss_pred ecChhhH
Q 048718 736 HGPVKKV 742 (1118)
Q Consensus 736 ~G~~~~l 742 (1118)
.|+.+++
T Consensus 237 ~g~~~~~ 243 (261)
T PRK14263 237 MGPTAQI 243 (261)
T ss_pred eCCHHHH
Confidence 9998765
No 229
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-37 Score=343.10 Aligned_cols=218 Identities=22% Similarity=0.276 Sum_probs=180.5
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEecC-----hh
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC---IMSGTILVNGKVAS-----IQ 583 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~~-----~~ 583 (1118)
.|+++||++.|. ++++|+|+|++|++||+++|+|+|||||||||++|+|+.++. +++|+|.++|+++. ..
T Consensus 10 ~l~i~~v~~~~~--~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYG--SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEEC--CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 588999999994 357999999999999999999999999999999999997521 36899999998752 23
Q ss_pred hhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHHH
Q 048718 584 SYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH----IRDSLVGTVEKRGISGGQR 659 (1118)
Q Consensus 584 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~----~~dt~vg~~~~rgLSGGER 659 (1118)
.+++.|+|++|++.+++ .||.||+.++...+ ... ....+.++++++.+++.+ ..++.+. .||||||
T Consensus 88 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~-----~LSgGq~ 157 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFP-KSIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDKLKQSGL-----SLSGGQQ 157 (264)
T ss_pred HHhhhEEEEccCCcccc-ccHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHHhcCCcc-----cCCHHHH
Confidence 45678999999998887 49999999875432 111 122345677788888743 3344444 4999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEec--------Cc
Q 048718 660 KRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAK--------GG 731 (1118)
Q Consensus 660 QRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~--------GG 731 (1118)
|||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ +.|||+++|+++. +.+.+|++++|.+ .|
T Consensus 158 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~~-~~~~~d~v~~l~~~~~~~~~~~g 235 (264)
T PRK14243 158 QRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQQ-AARVSDMTAFFNVELTEGGGRYG 235 (264)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHH-HHHhCCEEEEEecccccccccCc
Confidence 999999999999999999999999999999999999999875 5899999999875 5689999999972 47
Q ss_pred EEEEecChhhHH
Q 048718 732 VIVYHGPVKKVE 743 (1118)
Q Consensus 732 ~iv~~G~~~~l~ 743 (1118)
++++.|+++++.
T Consensus 236 ~i~~~~~~~~~~ 247 (264)
T PRK14243 236 YLVEFDRTEKIF 247 (264)
T ss_pred eEEEeCCHHHHH
Confidence 999999988773
No 230
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-37 Score=338.29 Aligned_cols=219 Identities=21% Similarity=0.335 Sum_probs=181.4
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCceeEEEECCEecCh-----
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPG---CIMSGTILVNGKVASI----- 582 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~---~~~sG~I~inG~~~~~----- 582 (1118)
..++++||++.|. ++.+|+|+||+|.+||+++|+|||||||||||++|+|+... .+++|+|.++|.++..
T Consensus 2 ~~l~~~~v~~~~~--~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 2 YRIEVENLNTYFD--DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred cEEEEEeEEEEeC--CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3578999999994 46799999999999999999999999999999999998641 1378999999987632
Q ss_pred hhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHH
Q 048718 583 QSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH----IRDSLVGTVEKRGISGGQ 658 (1118)
Q Consensus 583 ~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~----~~dt~vg~~~~rgLSGGE 658 (1118)
...++.++|+||++.+++. |+.||+.++.... ........+..+.++++.+||.+ ..++.+ ..|||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~~LS~Gq 151 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVKDKLDKSA-----LGLSGGQ 151 (250)
T ss_pred HHHhhheEEEecCCccCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCc-----ccCCHHH
Confidence 2456789999999988875 9999998875322 11122334456888999999853 234444 4599999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecC
Q 048718 659 RKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGP 738 (1118)
Q Consensus 659 RQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~ 738 (1118)
||||+|||||+.+|+||+|||||+|||+.++..+.+.|+++++ +.|||+++|+++. +.+.+|++++|.+ |++++.|+
T Consensus 152 ~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~-~~~~~~~i~~l~~-G~i~~~g~ 228 (250)
T PRK14266 152 QQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQQ-ATRVSKYTSFFLN-GEIIESGL 228 (250)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHHH-HHhhcCEEEEEEC-CeEEEeCC
Confidence 9999999999999999999999999999999999999999854 7899999999875 4578888988976 68999999
Q ss_pred hhhH
Q 048718 739 VKKV 742 (1118)
Q Consensus 739 ~~~l 742 (1118)
++++
T Consensus 229 ~~~~ 232 (250)
T PRK14266 229 TDQI 232 (250)
T ss_pred HHHH
Confidence 8776
No 231
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=4.4e-38 Score=368.89 Aligned_cols=222 Identities=30% Similarity=0.420 Sum_probs=192.6
Q ss_pred ceEEEEEeEEEEEcC---------CcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEec
Q 048718 510 TIEVAFKDLTITLKG---------KNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVA 580 (1118)
Q Consensus 510 ~~~l~~knLs~~~~~---------~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~ 580 (1118)
...++++||++.|.. +..++++||||++++||++||+|+||||||||.|+|+|+.+ |++|+|.++|.+.
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~--P~~G~i~~~g~~~ 355 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP--PSSGSIIFDGQDL 355 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEEeCccc
Confidence 345889999999973 12478999999999999999999999999999999999998 6899999999763
Q ss_pred C-----hhhhcCeEEEEcCCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCC
Q 048718 581 S-----IQSYKRIIGFVPQDD--IVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH-IRDSLVGTVEKR 652 (1118)
Q Consensus 581 ~-----~~~~r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~-~~dt~vg~~~~r 652 (1118)
+ ....|+++-+||||+ .|.|.+||+++|...+..... ....+.++++.++++.+||.. ..++++++
T Consensus 356 ~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~~l~ryP~e---- 429 (539)
T COG1123 356 DLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPEFLDRYPHE---- 429 (539)
T ss_pred ccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHHHHhcCchh----
Confidence 2 234667889999986 577999999999988765432 225566678999999999986 57777665
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCc
Q 048718 653 GISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGG 731 (1118)
Q Consensus 653 gLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG 731 (1118)
|||||||||+|||||+.+|++|++|||||.||+..+..++++|+++.++ |.|.|+||||+.. +..++|+++||.+ |
T Consensus 430 -lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~v-V~~i~drv~vm~~-G 506 (539)
T COG1123 430 -LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAV-VRYIADRVAVMYD-G 506 (539)
T ss_pred -cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHH-HHhhCceEEEEEC-C
Confidence 9999999999999999999999999999999999999999999999865 9999999999986 5689999999976 6
Q ss_pred EEEEecChhhH
Q 048718 732 VIVYHGPVKKV 742 (1118)
Q Consensus 732 ~iv~~G~~~~l 742 (1118)
++|+.|+.+++
T Consensus 507 ~iVE~G~~~~v 517 (539)
T COG1123 507 RIVEEGPTEKV 517 (539)
T ss_pred eEEEeCCHHHH
Confidence 99999988776
No 232
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-38 Score=371.82 Aligned_cols=217 Identities=28% Similarity=0.490 Sum_probs=186.9
Q ss_pred CceEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEec---Chhhh
Q 048718 509 PTIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVA---SIQSY 585 (1118)
Q Consensus 509 ~~~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~---~~~~~ 585 (1118)
+.+.+..+||++.|+.+ +++++|+|+++++|+.+||+|+||||||||+++|+|+.+ +++|+|.+||.+. +...+
T Consensus 317 ~~~ei~~~~l~~~y~~g-~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~--~~~G~I~vng~~l~~l~~~~~ 393 (559)
T COG4988 317 PPIEISLENLSFRYPDG-KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA--PTQGEIRVNGIDLRDLSPEAW 393 (559)
T ss_pred CCceeeecceEEecCCC-CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCccccccCHHHH
Confidence 34567777999999754 489999999999999999999999999999999999998 6899999999875 34578
Q ss_pred cCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc------cccccccCccCCCCCHHHH
Q 048718 586 KRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH------IRDSLVGTVEKRGISGGQR 659 (1118)
Q Consensus 586 r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~------~~dt~vg~~~~rgLSGGER 659 (1118)
+++++||+|++.+|+. |++|||.++.. +.+++ .+.++++..||.+ -.|+.+|+ ..++|||||+
T Consensus 394 ~k~i~~v~Q~p~lf~g-TireNi~l~~~-----~~s~e----~i~~al~~a~l~~~v~~p~GLdt~ige-~G~~LSgGQ~ 462 (559)
T COG4988 394 RKQISWVSQNPYLFAG-TIRENILLARP-----DASDE----EIIAALDQAGLLEFVPKPDGLDTVIGE-GGAGLSGGQA 462 (559)
T ss_pred HhHeeeeCCCCccccc-cHHHHhhccCC-----cCCHH----HHHHHHHHhcHHHhhcCCCcccchhcc-CCCCCCHHHH
Confidence 9999999999999976 99999998742 22333 3556666666643 45677775 6788999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecCh
Q 048718 660 KRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPV 739 (1118)
Q Consensus 660 QRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~ 739 (1118)
|||++||||+++++++++||||++||.++++.|++.|.+++++ +|+|++||++.. ...+|+|++|++ |++++.|..
T Consensus 463 QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-ktvl~itHrl~~--~~~~D~I~vld~-G~l~~~g~~ 538 (559)
T COG4988 463 QRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-KTVLVITHRLED--AADADRIVVLDN-GRLVEQGTH 538 (559)
T ss_pred HHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-CeEEEEEcChHH--HhcCCEEEEecC-CceeccCCH
Confidence 9999999999999999999999999999999999999998864 999999999874 367999999976 699999999
Q ss_pred hhHH
Q 048718 740 KKVE 743 (1118)
Q Consensus 740 ~~l~ 743 (1118)
+++.
T Consensus 539 ~~L~ 542 (559)
T COG4988 539 EELS 542 (559)
T ss_pred HHHh
Confidence 8873
No 233
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=6.6e-38 Score=331.46 Aligned_cols=196 Identities=28% Similarity=0.370 Sum_probs=171.2
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh--hhhcCeEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI--QSYKRIIG 590 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~Ig 590 (1118)
++++||++.|. ++.+|+|+|++|++||+++|+|+||||||||+++|+|+++ +.+|+|.++|.+... ..+++.++
T Consensus 1 l~i~~l~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERD--GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPLDFQRDSIARGLL 76 (201)
T ss_pred CEEEEEEEEeC--CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccccHHhhhheE
Confidence 46899999994 4679999999999999999999999999999999999997 689999999987532 34567899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
|++|++.+++.+||+||+.+.... . ..++++++++.+||.+..++++.+ |||||||||+|||||+.
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~laral~~ 142 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRPVAQ-----LSAGQQRRVALARLLLS 142 (201)
T ss_pred EeccccccCCCcCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCchhh-----CCHHHHHHHHHHHHHhc
Confidence 999999998899999999885321 1 124578899999999887877765 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEE
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILL 727 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL 727 (1118)
+|++|||||||+|||+.++..+.+.|+++.++|.|+|++||++.. +...+++++++
T Consensus 143 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~-~~~~~~~~~~~ 198 (201)
T cd03231 143 GRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLG-LSEAGARELDL 198 (201)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchh-hhhccceeEec
Confidence 999999999999999999999999999987779999999999875 45788888776
No 234
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-38 Score=339.85 Aligned_cols=213 Identities=28% Similarity=0.467 Sum_probs=170.9
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcCeE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKRII 589 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~I 589 (1118)
++++|+++.|.+ ++.+|+|+|++|++||+++|+|||||||||||++|+|+.+ +.+|+|.++|.++. ...+++.+
T Consensus 1 l~~~~l~~~~~~-~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~v~~~g~~~~~~~~~~~~~~i 77 (236)
T cd03253 1 IEFENVTFAYDP-GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD--VSSGSILIDGQDIREVTLDSLRRAI 77 (236)
T ss_pred CEEEEEEEEeCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCEEhhhCCHHHHHhhE
Confidence 468899999952 3569999999999999999999999999999999999997 68999999998753 23456779
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCccCCCCCHHHHHHH
Q 048718 590 GFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVL-----VVERVIESL--GLQHIRDSLVGTVEKRGISGGQRKRV 662 (1118)
Q Consensus 590 gyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~-----~v~~lL~~l--gL~~~~dt~vg~~~~rgLSGGERQRV 662 (1118)
+|++|++.+++ .||+||+.++... ........ .+.+.++.+ ++.+..+..+ +.|||||||||
T Consensus 78 ~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~-----~~LS~G~~~rl 146 (236)
T cd03253 78 GVVPQDTVLFN-DTIGYNIRYGRPD-----ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERG-----LKLSGGEKQRV 146 (236)
T ss_pred EEECCCChhhc-chHHHHHhhcCCC-----CCHHHHHHHHHHcCcHHHHHhccccccchhhcCC-----CcCCHHHHHHH
Confidence 99999998885 6999999876321 11111110 122333333 3333333333 45999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 663 NVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 663 sIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
+||+||+.+|++|||||||+|||+.++..+.+.|+++.+ |+|||+++|+++.. ..+|++++|.+ |++++.|+.+++
T Consensus 147 ~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~--~~~d~~~~l~~-g~i~~~~~~~~~ 222 (236)
T cd03253 147 AIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTI--VNADKIIVLKD-GRIVERGTHEEL 222 (236)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHH--HhCCEEEEEEC-CEEEeeCCHHHH
Confidence 999999999999999999999999999999999998876 99999999998764 35999999976 689998887765
Q ss_pred H
Q 048718 743 E 743 (1118)
Q Consensus 743 ~ 743 (1118)
.
T Consensus 223 ~ 223 (236)
T cd03253 223 L 223 (236)
T ss_pred h
Confidence 3
No 235
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.1e-37 Score=373.47 Aligned_cols=220 Identities=26% Similarity=0.383 Sum_probs=185.0
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEEC----------------
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVN---------------- 576 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~in---------------- 576 (1118)
|+++||+++|. ++.+|+|+||+|.+||+++|+||||||||||||+|+|+.+..+++|+|.++
T Consensus 1 l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFD--GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEEC--CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 46899999994 467999999999999999999999999999999999996201689999997
Q ss_pred -------CEec----------Ch---hhhcCeEEEEcCC-CCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHH
Q 048718 577 -------GKVA----------SI---QSYKRIIGFVPQD-DIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIES 635 (1118)
Q Consensus 577 -------G~~~----------~~---~~~r~~IgyV~Qd-~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~ 635 (1118)
|.++ .. ..+++.++||+|+ +.+++.+||+||+.++.... .....+.+++++++++.
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~ 155 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRAVDLIEM 155 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHH
Confidence 2211 00 1245679999997 67888899999999875432 22334445678999999
Q ss_pred cCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEcCCc
Q 048718 636 LGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREAL-EGVNICTVVHQPS 714 (1118)
Q Consensus 636 lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~ 714 (1118)
+||.+..++.+++ |||||||||+||+||+.+|+||||||||+|||+.++..+++.|+++++ .|+|||++||+++
T Consensus 156 ~gl~~~~~~~~~~-----LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~ 230 (520)
T TIGR03269 156 VQLSHRITHIARD-----LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230 (520)
T ss_pred cCChhhhhcCccc-----CCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 9999888887766 999999999999999999999999999999999999999999999975 4999999999987
Q ss_pred HHHHhccCcEEEEecCcEEEEecChhhHHH
Q 048718 715 YALFRMFDDLILLAKGGVIVYHGPVKKVEE 744 (1118)
Q Consensus 715 ~~i~~~~D~vivL~~GG~iv~~G~~~~l~~ 744 (1118)
. +.+++|++++|.+ |++++.|+++++..
T Consensus 231 ~-~~~~~d~i~~l~~-G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 231 V-IEDLSDKAIWLEN-GEIKEEGTPDEVVA 258 (520)
T ss_pred H-HHHhcCEEEEEeC-CEEeeecCHHHHHH
Confidence 5 4578999999976 68999999877644
No 236
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=8.9e-38 Score=410.39 Aligned_cols=224 Identities=28% Similarity=0.468 Sum_probs=199.8
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh--hhhcCeE
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI--QSYKRII 589 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~I 589 (1118)
.|+++||++.|+++++.+|+||||.|++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++.. ...++.|
T Consensus 1937 ~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~i~~~~~~~r~~I 2014 (2272)
T TIGR01257 1937 ILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSILTNISDVHQNM 2014 (2272)
T ss_pred eEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECcchHHHHhhhE
Confidence 589999999996434679999999999999999999999999999999999998 689999999988642 3456789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 048718 590 GFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMV 669 (1118)
Q Consensus 590 gyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl 669 (1118)
||+||++.+++.+||+|+|.+.++.+ +.+..+.++.++++++.+||.+.+|+++++ |||||||||+||+||+
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~-----LSGGqKqRLslA~ALi 2086 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAGT-----YSGGNKRKLSTAIALI 2086 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCChhh-----CCHHHHHHHHHHHHHh
Confidence 99999999999999999999877654 234444556788999999999989998876 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHHHHHH
Q 048718 670 MEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVEEYFA 747 (1118)
Q Consensus 670 ~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~~yf~ 747 (1118)
.+|+||||||||+|||+.+++.+++.|++++++|+|||++||++++ +..++|++++|.+ |+++..|++++++..|.
T Consensus 2087 ~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee-~e~lcDrV~IL~~-G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2087 GCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEE-CEALCTRLAIMVK-GAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEECCHHHHHHHhC
Confidence 9999999999999999999999999999998789999999999975 5689999999976 69999999999987664
No 237
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=3e-38 Score=390.50 Aligned_cols=217 Identities=30% Similarity=0.514 Sum_probs=184.7
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcC
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKR 587 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 587 (1118)
..|+++||+|+|++.++++|+|+|++|++||.+||+|+||||||||+|+|+|+++ |.+|+|.+||.+++ ...+|+
T Consensus 462 ~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~l~~~~~~~lr~ 539 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ--PTEGSVLLDGVDIRQIDPADLRR 539 (694)
T ss_pred ceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEhhhCCHHHHHh
Confidence 3699999999997545679999999999999999999999999999999999998 68999999998864 356889
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCCCCCHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGL-------QHIRDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL-------~~~~dt~vg~~~~rgLSGGERQ 660 (1118)
.|+||+|++.+|+. |++|||.++.. +.++++ +.++++..|+ .+..||.+|+ ....|||||||
T Consensus 540 ~i~~v~Q~~~lf~~-TI~eNi~~~~~-----~~~~~~----i~~a~~~~~l~~~i~~lp~gl~T~i~e-~G~~LSgGQrQ 608 (694)
T TIGR03375 540 NIGYVPQDPRLFYG-TLRDNIALGAP-----YADDEE----ILRAAELAGVTEFVRRHPDGLDMQIGE-RGRSLSGGQRQ 608 (694)
T ss_pred ccEEECCChhhhhh-hHHHHHhCCCC-----CCCHHH----HHHHHHHcChHHHHHhCcccccceecC-CCCCCCHHHHH
Confidence 99999999999975 99999987631 123332 3444444443 4456788876 45679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
|++|||||+++|+|||||||||+||+.++..+.+.|+++. +++|+|+++|+++. .+.+|++++|++ |++++.|+.+
T Consensus 609 RlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~~--~~~~D~iivl~~-G~i~e~G~~~ 684 (694)
T TIGR03375 609 AVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTSL--LDLVDRIIVMDN-GRIVADGPKD 684 (694)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHHH--HHhCCEEEEEeC-CEEEeeCCHH
Confidence 9999999999999999999999999999999999998875 47999999999874 478999999976 6999999998
Q ss_pred hHHH
Q 048718 741 KVEE 744 (1118)
Q Consensus 741 ~l~~ 744 (1118)
++.+
T Consensus 685 eLl~ 688 (694)
T TIGR03375 685 QVLE 688 (694)
T ss_pred HHHH
Confidence 8754
No 238
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-37 Score=339.86 Aligned_cols=218 Identities=26% Similarity=0.415 Sum_probs=181.1
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECC------EecC---h
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNG------KVAS---I 582 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG------~~~~---~ 582 (1118)
.+.++|++++|+ ++.+|+|+||+|.+||+++|+|||||||||||++|+|+.+ +.+|+|.++| .+.. .
T Consensus 10 ~i~~~~~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~--~~~G~v~~~G~~~~~g~~~~~~~~ 85 (257)
T PRK14246 10 VFNISRLYLYIN--DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE--IYDSKIKVDGKVLYFGKDIFQIDA 85 (257)
T ss_pred heeeeeEEEecC--CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCcCceeEcCEEEECCcccccCCH
Confidence 488999999994 4679999999999999999999999999999999999987 5676666655 4332 2
Q ss_pred hhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHH
Q 048718 583 QSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH----IRDSLVGTVEKRGISGGQ 658 (1118)
Q Consensus 583 ~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~----~~dt~vg~~~~rgLSGGE 658 (1118)
..+++.++|++|++.+++.+||+||+.++.... ....+.+....++++++.++|.+ ..++.++ .|||||
T Consensus 86 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~LS~G~ 158 (257)
T PRK14246 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSH--GIKEKREIKKIVEECLRKVGLWKEVYDRLNSPAS-----QLSGGQ 158 (257)
T ss_pred HHHhcceEEEccCCccCCCCcHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcc-----cCCHHH
Confidence 245678999999999999999999999875432 11223344556889999999963 3455444 599999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecC
Q 048718 659 RKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGP 738 (1118)
Q Consensus 659 RQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~ 738 (1118)
|||++|||||+.+|++|||||||+|||+.++..+.+.|+++.. +.|||++||+++. +.+.+|++++|.+ |++++.|+
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~~-~~~~~d~v~~l~~-g~i~~~g~ 235 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQQ-VARVADYVAFLYN-GELVEWGS 235 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHHH-HHHhCCEEEEEEC-CEEEEECC
Confidence 9999999999999999999999999999999999999998864 6899999999875 4578999999976 69999999
Q ss_pred hhhHH
Q 048718 739 VKKVE 743 (1118)
Q Consensus 739 ~~~l~ 743 (1118)
.+++.
T Consensus 236 ~~~~~ 240 (257)
T PRK14246 236 SNEIF 240 (257)
T ss_pred HHHHH
Confidence 87653
No 239
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.1e-37 Score=365.48 Aligned_cols=225 Identities=25% Similarity=0.426 Sum_probs=192.7
Q ss_pred EEEEEeEEEEEcCCc--ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeEEEECCEecC---h--
Q 048718 512 EVAFKDLTITLKGKN--KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC--IMSGTILVNGKVAS---I-- 582 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~--k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~--~~sG~I~inG~~~~---~-- 582 (1118)
.|+++||++.|.... .++++||||+|.+||++||+|.|||||||+.++|.|+++.. ..+|+|.++|.++. .
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 589999999996432 36999999999999999999999999999999999999743 25899999998642 1
Q ss_pred -hh-hcCeEEEEcCCCC--CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH
Q 048718 583 -QS-YKRIIGFVPQDDI--VHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQ 658 (1118)
Q Consensus 583 -~~-~r~~IgyV~Qd~~--l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGE 658 (1118)
.. ..++|+||||++. +-|-+||.+.|.-....+. ....++.++++.++|+++||.+.... +.+++.|||||
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~--~~~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG~ 159 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG--KGSRAEARKRAVELLEQVGLPDPERR---DRYPHQLSGGM 159 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHcCCCChhhh---ccCCcccCchH
Confidence 12 2367999999974 5566899999988776653 23467777889999999999876554 33567799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEec
Q 048718 659 RKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHG 737 (1118)
Q Consensus 659 RQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G 737 (1118)
||||.||+||+.+|+|||+||||++||+.++.+|+++|+++.+ .|.++|+||||+.. +.+++|+++||.+ |++++.|
T Consensus 160 rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~V-va~~aDrv~Vm~~-G~iVE~G 237 (539)
T COG1123 160 RQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGV-VAELADRVVVMYK-GEIVETG 237 (539)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHH-HHHhcCeEEEEEC-CEEEEec
Confidence 9999999999999999999999999999999999999999985 59999999999975 6789999999986 6999999
Q ss_pred ChhhHH
Q 048718 738 PVKKVE 743 (1118)
Q Consensus 738 ~~~~l~ 743 (1118)
+++++.
T Consensus 238 ~~~~i~ 243 (539)
T COG1123 238 PTEEIL 243 (539)
T ss_pred CHHHHH
Confidence 999885
No 240
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.4e-37 Score=372.65 Aligned_cols=219 Identities=24% Similarity=0.346 Sum_probs=185.0
Q ss_pred EEEEEeEEEEEcC---CcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEEC-CEe---cCh--
Q 048718 512 EVAFKDLTITLKG---KNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVN-GKV---ASI-- 582 (1118)
Q Consensus 512 ~l~~knLs~~~~~---~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~in-G~~---~~~-- 582 (1118)
.++++||++.|.+ +.+.+|+|+||+|++||+++|+||||||||||||+|+|+++ +++|+|.++ |.+ +..
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~~~~~~~~~ 356 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDEWVDMTKPG 356 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCccccccccc
Confidence 5899999999952 23579999999999999999999999999999999999997 689999996 532 111
Q ss_pred ----hhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc-----cccccccCccCCC
Q 048718 583 ----QSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH-----IRDSLVGTVEKRG 653 (1118)
Q Consensus 583 ----~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~-----~~dt~vg~~~~rg 653 (1118)
...++.|+|++|++.+++.+||.||+.+..... ......+.+++++++.+||.+ ..++++++
T Consensus 357 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~----- 427 (520)
T TIGR03269 357 PDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKYPDE----- 427 (520)
T ss_pred hhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCChhh-----
Confidence 123567999999998999999999998864321 223333456889999999975 45777765
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcE
Q 048718 654 ISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGV 732 (1118)
Q Consensus 654 LSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~ 732 (1118)
|||||||||+||+||+.+|+||||||||+|||+.++..+++.|++++++ |.|||++||+++. +.+++|++++|.+ |+
T Consensus 428 LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~-~~~~~d~i~~l~~-G~ 505 (520)
T TIGR03269 428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDF-VLDVCDRAALMRD-GK 505 (520)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHH-HHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 8999999999976 5688999999976 68
Q ss_pred EEEecChhhHH
Q 048718 733 IVYHGPVKKVE 743 (1118)
Q Consensus 733 iv~~G~~~~l~ 743 (1118)
+++.|+++++.
T Consensus 506 i~~~g~~~~~~ 516 (520)
T TIGR03269 506 IVKIGDPEEIV 516 (520)
T ss_pred EEEECCHHHHH
Confidence 99999987764
No 241
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=2.6e-37 Score=335.85 Aligned_cols=223 Identities=26% Similarity=0.333 Sum_probs=178.0
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hh-hcCe
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QS-YKRI 588 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~-~r~~ 588 (1118)
++++||++.|. ++++|+|+|++|++||+++|+|||||||||||++|+|+.+..+++|+|.++|.++.. .. .++.
T Consensus 2 i~~~nl~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVE--DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeC--CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 67899999995 357999999999999999999999999999999999995211689999999976532 12 2356
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhh-cc--CC-CCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHHH
Q 048718 589 IGFVPQDDIVHGNLTVEENLWFSARC-RL--SA-DLPKAEKVLVVERVIESLGLQ-HIRDSLVGTVEKRGISGGQRKRVN 663 (1118)
Q Consensus 589 IgyV~Qd~~l~~~LTV~EnL~f~a~l-r~--~~-~~~~~~~~~~v~~lL~~lgL~-~~~dt~vg~~~~rgLSGGERQRVs 663 (1118)
++|++|++.+++.+|+.+++.+.... .. .. ..........++++++.++|. +..++.+. +.|||||||||+
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrv~ 155 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----VGFSGGEKKRND 155 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC----CCCCHHHHHHHH
Confidence 99999999998888887776543211 10 00 011222345678899999995 44555442 249999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhc-cCcEEEEecCcEEEEecChhhH
Q 048718 664 VGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRM-FDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 664 IArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~-~D~vivL~~GG~iv~~G~~~~l 742 (1118)
|||||+.+|+||+|||||+|||+.++..+.+.|+++++.|+|||++||+++.. ... +|++++|.+ |++++.|+.+.+
T Consensus 156 laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~-~~~~~d~i~~l~~-g~i~~~g~~~~~ 233 (248)
T PRK09580 156 ILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRIL-DYIKPDYVHVLYQ-GRIVKSGDFTLV 233 (248)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HhhhCCEEEEEEC-CeEEEeCCHHHH
Confidence 99999999999999999999999999999999999887789999999998753 344 799999865 689999998865
Q ss_pred H
Q 048718 743 E 743 (1118)
Q Consensus 743 ~ 743 (1118)
.
T Consensus 234 ~ 234 (248)
T PRK09580 234 K 234 (248)
T ss_pred H
Confidence 4
No 242
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=1.2e-37 Score=328.30 Aligned_cols=195 Identities=27% Similarity=0.325 Sum_probs=167.4
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh--hhhcCeEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI--QSYKRIIG 590 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~Ig 590 (1118)
++++||++.|. ++.+|+|+||+|++||+++|+||||||||||+++|+|+++ +++|+|.++|.++.. ..+++.++
T Consensus 1 l~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRG--ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALAEQRDEPHRNIL 76 (198)
T ss_pred CEEEEEEEEEC--CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccchHHhhhheE
Confidence 46789999994 4679999999999999999999999999999999999997 689999999987532 23457899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
|++|++.+++.+||.||+.+....+. .. ...++++++.+||.+..++.+++ |||||||||+||+||+.
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~----~~---~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al~~ 144 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFWAAIHG----GA---QRTIEDALAAVGLTGFEDLPAAQ-----LSAGQQRRLALARLWLS 144 (198)
T ss_pred EeccCcccccCCcHHHHHHHHHHHcC----Cc---HHHHHHHHHHcCCHHHhcCChhh-----cCHHHHHHHHHHHHHhc
Confidence 99999988888999999988654321 11 23578899999999888887766 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEE
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLIL 726 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~viv 726 (1118)
+|++|+|||||+|||+.++..+.+.|++++++|.|+|++||++... .+++++.
T Consensus 145 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~---~~~~~~~ 197 (198)
T TIGR01189 145 RAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL---VEARELR 197 (198)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc---cceEEee
Confidence 9999999999999999999999999999887799999999998642 3455543
No 243
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.2e-37 Score=340.04 Aligned_cols=209 Identities=24% Similarity=0.392 Sum_probs=177.6
Q ss_pred EEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcCeEE
Q 048718 514 AFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKRIIG 590 (1118)
Q Consensus 514 ~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~Ig 590 (1118)
+++||++. .+|+||||+|++||+++|+||||||||||+++|+|+.+ .+|+|.++|+++.. ..+++.++
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~i~ 72 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---GSGSIQFAGQPLEAWSAAELARHRA 72 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCeEEEECCEecCcCCHHHHhhheE
Confidence 35667663 28999999999999999999999999999999999985 38999999987632 23456799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
|++|++.+++.+||+||+.+.... .....+..+.++++++.+||.+..++.++. |||||||||+||+||+.
T Consensus 73 ~v~q~~~~~~~~tv~~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al~~ 143 (248)
T PRK03695 73 YLSQQQTPPFAMPVFQYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSVNQ-----LSGGEWQRVRLAAVVLQ 143 (248)
T ss_pred EecccCccCCCccHHHHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCccc-----CCHHHHHHHHHHHHHhc
Confidence 999998888889999999886321 112233345688999999998877877765 99999999999999998
Q ss_pred -------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 671 -------EPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 671 -------~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +.+.+|++++|.+ |++++.|+.+++
T Consensus 144 ~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~-~~~~~d~i~~l~~-G~i~~~g~~~~~ 220 (248)
T PRK03695 144 VWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNH-TLRHADRVWLLKQ-GKLLASGRRDEV 220 (248)
T ss_pred cccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEEEEEC-CEEEEECCHHHH
Confidence 679999999999999999999999999998779999999999875 5689999999976 689999987765
No 244
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-37 Score=380.79 Aligned_cols=220 Identities=22% Similarity=0.356 Sum_probs=187.0
Q ss_pred EEEEEeEEEEEcCC--cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEec---------
Q 048718 512 EVAFKDLTITLKGK--NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVA--------- 580 (1118)
Q Consensus 512 ~l~~knLs~~~~~~--~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~--------- 580 (1118)
.|+++||++.|... ..++|+||||+|++||+++|+||||||||||||+|+|+++ +.+|+|.++|..+
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~--p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE--QAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCeEEEECCEEeccccccccc
Confidence 58999999999532 3479999999999999999999999999999999999997 6899999998633
Q ss_pred ----Ch---hhhc-CeEEEEcCCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc---ccccccc
Q 048718 581 ----SI---QSYK-RIIGFVPQDD--IVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH---IRDSLVG 647 (1118)
Q Consensus 581 ----~~---~~~r-~~IgyV~Qd~--~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~---~~dt~vg 647 (1118)
.. ..++ +.||||+|++ .+++.+||.|||.+++.... .....+.++++.++++.+||.+ ..++++.
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~ 167 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQTILSRYPH 167 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhhHHhCCCc
Confidence 11 1223 4799999998 67888999999999865421 2344455567899999999963 4677776
Q ss_pred CccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEE
Q 048718 648 TVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLIL 726 (1118)
Q Consensus 648 ~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~viv 726 (1118)
+ |||||||||+||+||+.+|+||||||||++||+.++.+++++|++++++ |+|||+|||+++. +.+++|++++
T Consensus 168 ~-----LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~-~~~~adri~v 241 (623)
T PRK10261 168 Q-----LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGV-VAEIADRVLV 241 (623)
T ss_pred c-----CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH-HHHhCCEEEE
Confidence 5 9999999999999999999999999999999999999999999999865 9999999999875 4588999999
Q ss_pred EecCcEEEEecChhhH
Q 048718 727 LAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 727 L~~GG~iv~~G~~~~l 742 (1118)
|.+ |++++.|+++++
T Consensus 242 l~~-G~i~~~g~~~~~ 256 (623)
T PRK10261 242 MYQ-GEAVETGSVEQI 256 (623)
T ss_pred eeC-CeecccCCHHHh
Confidence 976 689999998765
No 245
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.5e-37 Score=330.20 Aligned_cols=197 Identities=27% Similarity=0.372 Sum_probs=170.0
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEE
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGF 591 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 591 (1118)
.++++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+.+ +++|+|+++|.+.....+++.++|
T Consensus 2 ~l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~ 77 (207)
T PRK13539 2 MLEGEDLACVRG--GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDIDDPDVAEACHY 77 (207)
T ss_pred EEEEEeEEEEEC--CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCcchhhHhhcEE
Confidence 478999999994 3679999999999999999999999999999999999987 689999999987542236778999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 048718 592 VPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVME 671 (1118)
Q Consensus 592 V~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~ 671 (1118)
++|++.+++.+||.||+.+....+ ... ...++++++.+||.+..++.+++ |||||||||+||+||+.+
T Consensus 78 ~~~~~~~~~~~tv~~~l~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~al~~~ 145 (207)
T PRK13539 78 LGHRNAMKPALTVAENLEFWAAFL---GGE----ELDIAAALEAVGLAPLAHLPFGY-----LSAGQKRRVALARLLVSN 145 (207)
T ss_pred ecCCCcCCCCCcHHHHHHHHHHhc---CCc----HHHHHHHHHHcCCHHHHcCChhh-----cCHHHHHHHHHHHHHhcC
Confidence 999988888999999998865432 111 12478899999998777777765 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEE
Q 048718 672 PSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILL 727 (1118)
Q Consensus 672 P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL 727 (1118)
|++|||||||+|||+.++..+.+.|++++++|.|||++||++++ + .. |+++.+
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~-~~-~~~~~~ 198 (207)
T PRK13539 146 RPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLG-L-PG-ARELDL 198 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchh-h-cc-CcEEee
Confidence 99999999999999999999999999988779999999999875 3 33 777666
No 246
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.7e-38 Score=326.09 Aligned_cols=219 Identities=29% Similarity=0.421 Sum_probs=187.9
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcCeE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKRII 589 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~I 589 (1118)
|+.+||+++.. ++.+|++||++++|||+++|+||||||||||||.|+|.+. |.+|++.+||.+.+. .++.+.-
T Consensus 2 i~a~nls~~~~--Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~~~~~~~lA~~r 77 (259)
T COG4559 2 IRAENLSYSLA--GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLNSWPPEELARHR 77 (259)
T ss_pred eeeeeeEEEee--cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChhhCCHHHHHHHh
Confidence 67889999984 5789999999999999999999999999999999999998 689999999987643 3445567
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 048718 590 GFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMV 669 (1118)
Q Consensus 590 gyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl 669 (1118)
+.+||+..+-...||+|-+.++..-... .....+..+.++++|+..++.+...+..-. |||||||||.+||.|+
T Consensus 78 aVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~y~~-----LSGGEqQRVqlARvLa 151 (259)
T COG4559 78 AVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRDYRT-----LSGGEQQRVQLARVLA 151 (259)
T ss_pred hhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccchhh-----cCchHHHHHHHHHHHH
Confidence 9999998886667999999998643211 222234455688999999999988776654 9999999999999998
Q ss_pred h------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 670 M------EPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 670 ~------~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
. ++++|+||||||+||...+..++++.|+++++|..|++|.||++.+ ..++|++++|.+ |+++..|+++++.
T Consensus 152 Ql~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLA-A~YaDrivll~~-Grv~a~g~p~~vl 229 (259)
T COG4559 152 QLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLA-AQYADRIVLLHQ-GRVIASGSPQDVL 229 (259)
T ss_pred HccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHH-HHhhheeeeeeC-CeEeecCCHHHhc
Confidence 6 4458999999999999999999999999999999999999999986 479999999976 6999999998863
No 247
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=2.3e-37 Score=331.70 Aligned_cols=204 Identities=25% Similarity=0.357 Sum_probs=169.9
Q ss_pred EEEEeEEEEEcC----C-cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEEC--CE--ecC--
Q 048718 513 VAFKDLTITLKG----K-NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVN--GK--VAS-- 581 (1118)
Q Consensus 513 l~~knLs~~~~~----~-~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~in--G~--~~~-- 581 (1118)
++++||++.|.. + ++.+|+|+||+|++||+++|+|||||||||||++|+|+++ +++|+|.++ |. ++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~~~g~~~~~~~~ 79 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL--PDSGRILVRHEGAWVDLAQA 79 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEEecCCCccchhhc
Confidence 678999999952 1 2479999999999999999999999999999999999998 689999998 42 321
Q ss_pred -hh---hh-cCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCCCCC
Q 048718 582 -IQ---SY-KRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHI-RDSLVGTVEKRGIS 655 (1118)
Q Consensus 582 -~~---~~-r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~-~dt~vg~~~~rgLS 655 (1118)
.. .+ ++.++|++|++.+++.+||+||+.+.+... ........+.+.++++.+||.+. .+..+.+ ||
T Consensus 80 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LS 151 (224)
T TIGR02324 80 SPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLPPAT-----FS 151 (224)
T ss_pred CHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCCccc-----CC
Confidence 11 12 357999999999999999999999865422 22333344567889999999763 4556554 99
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEE
Q 048718 656 GGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILL 727 (1118)
Q Consensus 656 GGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL 727 (1118)
|||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++.+|.|||+++|+++. +.+++|+++.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~-~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEV-RELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcceeEec
Confidence 999999999999999999999999999999999999999999998779999999999764 44689998876
No 248
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=7.5e-38 Score=380.28 Aligned_cols=214 Identities=22% Similarity=0.373 Sum_probs=184.1
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcC
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKR 587 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 587 (1118)
..++++|+++.|+. ++++|+|+|++|++||.+||+|+||||||||+|+|+|+++ |.+|+|.+||.+++ ...+++
T Consensus 339 ~~i~~~~v~f~y~~-~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~i~~~~~~~l~~ 415 (592)
T PRK10790 339 GRIDIDNVSFAYRD-DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP--LTEGEIRLDGRPLSSLSHSVLRQ 415 (592)
T ss_pred CeEEEEEEEEEeCC-CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEEhhhCCHHHHHh
Confidence 35899999999963 3579999999999999999999999999999999999998 68999999998764 356889
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCCCHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-------HIRDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-------~~~dt~vg~~~~rgLSGGERQ 660 (1118)
.|+||+|++.+|+. |++|||.++. ...++ .+.++++.+|+. +..|+.+|+ ....|||||||
T Consensus 416 ~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~d~----~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~~LSGGqrQ 483 (592)
T PRK10790 416 GVAMVQQDPVVLAD-TFLANVTLGR------DISEE----QVWQALETVQLAELARSLPDGLYTPLGE-QGNNLSVGQKQ 483 (592)
T ss_pred heEEEccCCccccc-hHHHHHHhCC------CCCHH----HHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHH
Confidence 99999999999976 9999999863 12222 356666666654 345777776 45569999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
|++|||||+++|+||+|||||++||+.++..+.+.|+++.. ++|+|++||+++. ...+|++++|++ |++++.|+.+
T Consensus 484 RialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~~--l~~~D~ii~l~~-G~i~~~G~~~ 559 (592)
T PRK10790 484 LLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLST--IVEADTILVLHR-GQAVEQGTHQ 559 (592)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchHH--HHhCCEEEEEEC-CEEEEEcCHH
Confidence 99999999999999999999999999999999999988754 6999999999864 467999999976 6999999998
Q ss_pred hHH
Q 048718 741 KVE 743 (1118)
Q Consensus 741 ~l~ 743 (1118)
++.
T Consensus 560 ~L~ 562 (592)
T PRK10790 560 QLL 562 (592)
T ss_pred HHH
Confidence 874
No 249
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2e-38 Score=393.84 Aligned_cols=224 Identities=27% Similarity=0.470 Sum_probs=185.8
Q ss_pred ceEEEEEeEEEEEcCC-cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhh
Q 048718 510 TIEVAFKDLTITLKGK-NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSY 585 (1118)
Q Consensus 510 ~~~l~~knLs~~~~~~-~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~ 585 (1118)
...++|+||.|+|+.+ +..||+|+||.|++|+.+||+|||||||||++++|.++++ |++|+|++||.++. .+.+
T Consensus 348 ~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd--P~~G~V~idG~di~~~~~~~l 425 (1228)
T KOG0055|consen 348 KGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD--PTSGEVLIDGEDIRNLNLKWL 425 (1228)
T ss_pred ccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCceEEEcCccchhcchHHH
Confidence 4579999999999854 3579999999999999999999999999999999999998 79999999998764 3568
Q ss_pred cCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 048718 586 KRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVG 665 (1118)
Q Consensus 586 r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIA 665 (1118)
|.+||.|.|+|.+| ..||+|||.|+....+..++.+..+.+.+++.+. .|.+..+|.+|+.+ -.|||||||||+||
T Consensus 426 r~~iglV~QePvlF-~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~--~lp~g~~T~vge~g-~qLSGGQKQRIAIA 501 (1228)
T KOG0055|consen 426 RSQIGLVSQEPVLF-ATTIRENIRYGKPDATREEIEEAAKAANAHDFIL--KLPDGYDTLVGERG-VQLSGGQKQRIAIA 501 (1228)
T ss_pred HhhcCeeeechhhh-cccHHHHHhcCCCcccHHHHHHHHHHccHHHHHH--hhHHhhcccccCCC-CCCChHHHHHHHHH
Confidence 89999999999888 5699999999843211111111112222333333 45777899999733 23999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 666 LEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 666 rALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
|||+.+|+|||||||||+||+.++..+.++|.+. ..|+|.|+|+|+++. + +.+|++++|.+ |+|++.|+.+|+.
T Consensus 502 Ralv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~-~~grTTivVaHRLSt-I-rnaD~I~v~~~-G~IvE~G~h~ELi 575 (1228)
T KOG0055|consen 502 RALVRNPKILLLDEATSALDAESERVVQEALDKA-SKGRTTIVVAHRLST-I-RNADKIAVMEE-GKIVEQGTHDELI 575 (1228)
T ss_pred HHHHhCCCEEEecCcccccCHHHHHHHHHHHHHh-hcCCeEEEEeeehhh-h-hccCEEEEEEC-CEEEEecCHHHHH
Confidence 9999999999999999999999999999999765 468999999999984 3 67999999976 6999999999875
No 250
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.6e-37 Score=371.13 Aligned_cols=222 Identities=22% Similarity=0.365 Sum_probs=186.0
Q ss_pred EEEEEeEEEEEcCC--cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEecCh---h
Q 048718 512 EVAFKDLTITLKGK--NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC---IMSGTILVNGKVASI---Q 583 (1118)
Q Consensus 512 ~l~~knLs~~~~~~--~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~~~---~ 583 (1118)
.++++||+++|..+ .+.+|+||||+|++||+++|+||||||||||||+|+|++++. +++|+|.++|+++.. .
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48899999999531 257999999999999999999999999999999999999742 269999999987632 1
Q ss_pred ---hhc-CeEEEEcCCCC--CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCccCCCC
Q 048718 584 ---SYK-RIIGFVPQDDI--VHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH---IRDSLVGTVEKRGI 654 (1118)
Q Consensus 584 ---~~r-~~IgyV~Qd~~--l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~---~~dt~vg~~~~rgL 654 (1118)
..+ +.||||+|++. +++.+||+|++.+..... ......+...+++++++.+||.+ ..++++++ |
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~-----L 157 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH--RGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQ-----L 157 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcc-----c
Confidence 123 57999999975 667789999998754321 12334445567899999999976 34777765 9
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEE
Q 048718 655 SGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVI 733 (1118)
Q Consensus 655 SGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~i 733 (1118)
||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++ |.|||++||+++. +.+++|++++|.+ |++
T Consensus 158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~-~~~~~dri~~l~~-G~i 235 (529)
T PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSI-VRKLADRVAVMQN-GRC 235 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHH-HHHhcCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999865 8999999999875 4578999999976 689
Q ss_pred EEecChhhH
Q 048718 734 VYHGPVKKV 742 (1118)
Q Consensus 734 v~~G~~~~l 742 (1118)
++.|+++++
T Consensus 236 ~~~g~~~~~ 244 (529)
T PRK15134 236 VEQNRAATL 244 (529)
T ss_pred EEeCCHHHH
Confidence 999998765
No 251
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=5e-38 Score=389.30 Aligned_cols=215 Identities=24% Similarity=0.401 Sum_probs=182.3
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcC
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKR 587 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 587 (1118)
..|+++||+|+|+ .++++|+|+|++|++||.+||+||||||||||+|+|+|+++ |++|+|++||.++. ...+|+
T Consensus 472 ~~I~~~~vsf~y~-~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~--p~~G~I~idg~~i~~~~~~~lr~ 548 (708)
T TIGR01193 472 GDIVINDVSYSYG-YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ--ARSGEILLNGFSLKDIDRHTLRQ 548 (708)
T ss_pred CcEEEEEEEEEcC-CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCCcEEEECCEEHHHcCHHHHHH
Confidence 3699999999995 34679999999999999999999999999999999999998 68999999998763 456889
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCCCCCHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGL-------QHIRDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL-------~~~~dt~vg~~~~rgLSGGERQ 660 (1118)
.||||+|++.+|+. ||+|||.++.. .+.++++ +.++++..|+ ....|+.+|+ ....|||||||
T Consensus 549 ~i~~v~Q~~~lf~g-TI~eNi~l~~~----~~~~~~~----i~~a~~~a~l~~~i~~lp~gldt~i~e-~G~~LSgGQrQ 618 (708)
T TIGR01193 549 FINYLPQEPYIFSG-SILENLLLGAK----ENVSQDE----IWAACEIAEIKDDIENMPLGYQTELSE-EGSSISGGQKQ 618 (708)
T ss_pred heEEEecCceehhH-HHHHHHhccCC----CCCCHHH----HHHHHHHhCCHHHHHhcccccCcEecC-CCCCCCHHHHH
Confidence 99999999999965 99999998631 1222222 3444444444 3456788876 45679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
|++|||||+++|+||||||||++||+.++..+.+.|+++ +|+|+|+++|+++. .+.+|++++|++ |++++.|+.+
T Consensus 619 RialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~--~~~~D~i~~l~~-G~i~~~G~~~ 693 (708)
T TIGR01193 619 RIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSV--AKQSDKIIVLDH-GKIIEQGSHD 693 (708)
T ss_pred HHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHH--HHcCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999999999999999875 58999999999874 478999999976 6999999988
Q ss_pred hHH
Q 048718 741 KVE 743 (1118)
Q Consensus 741 ~l~ 743 (1118)
++.
T Consensus 694 ~L~ 696 (708)
T TIGR01193 694 ELL 696 (708)
T ss_pred HHH
Confidence 774
No 252
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-37 Score=344.79 Aligned_cols=221 Identities=24% Similarity=0.381 Sum_probs=179.7
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCceeEEEECCEecCh-----h
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPG---CIMSGTILVNGKVASI-----Q 583 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~---~~~sG~I~inG~~~~~-----~ 583 (1118)
.|.++||++.|. ++.+|+++||+|++||+++|+|+|||||||||++|+|++++ .+.+|+|.++|.++.. .
T Consensus 45 ~l~i~nl~~~~~--~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~ 122 (305)
T PRK14264 45 KLSVEDLDVYYG--DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLV 122 (305)
T ss_pred eEEEEEEEEEeC--CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHH
Confidence 588999999994 36799999999999999999999999999999999999852 1479999999987632 2
Q ss_pred hhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccC---------CCCC-HHHHHHHHHHHHHHcCCCc----cccccccCc
Q 048718 584 SYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLS---------ADLP-KAEKVLVVERVIESLGLQH----IRDSLVGTV 649 (1118)
Q Consensus 584 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~---------~~~~-~~~~~~~v~~lL~~lgL~~----~~dt~vg~~ 649 (1118)
.+++.++|++|++.+++ .||+||+.++...... .... .....+.+.++++.++|.+ ..+..+
T Consensus 123 ~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--- 198 (305)
T PRK14264 123 ELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNA--- 198 (305)
T ss_pred HHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCcc---
Confidence 35678999999998887 5999999987542110 0011 1223456788999998853 334444
Q ss_pred cCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEec
Q 048718 650 EKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAK 729 (1118)
Q Consensus 650 ~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~ 729 (1118)
+.|||||||||+||+||+++|+||||||||+|||+.++..+.+.|+++++ +.|||++||+++. +.+++|+++++.+
T Consensus 199 --~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~-i~~~~d~i~~~l~ 274 (305)
T PRK14264 199 --LGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQQ-AARISDQTAVFLT 274 (305)
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHH-HHHhcCEEEEEec
Confidence 45999999999999999999999999999999999999999999999876 4899999999875 4578999754434
Q ss_pred CcEEEEecChhhH
Q 048718 730 GGVIVYHGPVKKV 742 (1118)
Q Consensus 730 GG~iv~~G~~~~l 742 (1118)
+|++++.|+++++
T Consensus 275 ~G~i~~~g~~~~~ 287 (305)
T PRK14264 275 GGELVEYDDTDKI 287 (305)
T ss_pred CCEEEEeCCHHHH
Confidence 5799999998765
No 253
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.8e-37 Score=372.55 Aligned_cols=220 Identities=26% Similarity=0.393 Sum_probs=186.4
Q ss_pred EEEEEeEEEEEcC---------CcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh
Q 048718 512 EVAFKDLTITLKG---------KNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI 582 (1118)
Q Consensus 512 ~l~~knLs~~~~~---------~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~ 582 (1118)
.++++||++.|+. +++.+|+||||+|++||+++|+||||||||||+|+|+|+++ .+|+|.++|+++..
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~ 351 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHN 351 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccc
Confidence 4899999999952 13579999999999999999999999999999999999984 68999999987532
Q ss_pred ---h---hhcCeEEEEcCCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCC
Q 048718 583 ---Q---SYKRIIGFVPQDD--IVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-HIRDSLVGTVEKRG 653 (1118)
Q Consensus 583 ---~---~~r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-~~~dt~vg~~~~rg 653 (1118)
. .+++.++||+|++ .+++.+||.||+.++...+. ......+.+.+++++++.+||. +..++.+++
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~----- 425 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQ-PTLSAAQREQQVIAVMEEVGLDPETRHRYPAE----- 425 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhcc-ccCChHHHHHHHHHHHHHcCCCHHHHhcCCcc-----
Confidence 1 2356799999997 47888999999998754321 1122334445688999999997 467777766
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcE
Q 048718 654 ISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGV 732 (1118)
Q Consensus 654 LSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~ 732 (1118)
|||||||||+||+||+.+|+||||||||+|||+.++..+++.|++++++ |.|||++||+++. +.+++|++++|.+ |+
T Consensus 426 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~-~~~~~d~i~~l~~-G~ 503 (529)
T PRK15134 426 FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHV-VRALCHQVIVLRQ-GE 503 (529)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH-HHHhcCeEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999865 8999999999876 4578999999976 68
Q ss_pred EEEecChhhH
Q 048718 733 IVYHGPVKKV 742 (1118)
Q Consensus 733 iv~~G~~~~l 742 (1118)
+++.|+++++
T Consensus 504 i~~~~~~~~~ 513 (529)
T PRK15134 504 VVEQGDCERV 513 (529)
T ss_pred EEEEcCHHHH
Confidence 9999998776
No 254
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=5.2e-38 Score=380.66 Aligned_cols=216 Identities=24% Similarity=0.477 Sum_probs=185.9
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcC
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKR 587 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 587 (1118)
..++++||++.|+++++++|+|+|++|++||.++|+||||||||||+++|+|+++ |++|+|++||.++. ...+|+
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--p~~G~I~i~g~~i~~~~~~~~r~ 414 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD--PQQGEILLNGQPIADYSEAALRQ 414 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEhhhCCHHHHHh
Confidence 4699999999996544679999999999999999999999999999999999998 68999999998764 356788
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCcc------ccccccCccCCCCCHHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHI------RDSLVGTVEKRGISGGQRKR 661 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~------~dt~vg~~~~rgLSGGERQR 661 (1118)
.|+||+|++.+|+. |++|||.++.. +.++ +.+.++++.+++.+. .||.+|+ ....||||||||
T Consensus 415 ~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~~~~----~~i~~al~~~~l~~~i~~p~GldT~vge-~g~~LSgGqrqR 483 (574)
T PRK11160 415 AISVVSQRVHLFSA-TLRDNLLLAAP-----NASD----EALIEVLQQVGLEKLLEDDKGLNAWLGE-GGRQLSGGEQRR 483 (574)
T ss_pred heeEEcccchhhcc-cHHHHhhcCCC-----ccCH----HHHHHHHHHcCCHHHHcCccccCchhcC-CCCCCCHHHHHH
Confidence 99999999999965 99999988631 1222 236777888877543 5677775 456799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhh
Q 048718 662 VNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKK 741 (1118)
Q Consensus 662 VsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~ 741 (1118)
++|||||+++|++|+|||||++||+.++..+.+.|+++. +++|+|+++|+++. + ..+|++++|++ |++++.|+.++
T Consensus 484 ialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~-~-~~~d~i~~l~~-G~i~~~g~~~~ 559 (574)
T PRK11160 484 LGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTG-L-EQFDRICVMDN-GQIIEQGTHQE 559 (574)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhH-H-HhCCEEEEEeC-CeEEEeCCHHH
Confidence 999999999999999999999999999999999998875 58999999999875 3 67999999976 69999999887
Q ss_pred HH
Q 048718 742 VE 743 (1118)
Q Consensus 742 l~ 743 (1118)
+.
T Consensus 560 l~ 561 (574)
T PRK11160 560 LL 561 (574)
T ss_pred HH
Confidence 64
No 255
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-37 Score=337.37 Aligned_cols=218 Identities=22% Similarity=0.298 Sum_probs=180.5
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC---ceeEEEECCEecC------
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCI---MSGTILVNGKVAS------ 581 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~---~sG~I~inG~~~~------ 581 (1118)
..|+++||++.|. ++.+|+|+||+|++||+++|+|+|||||||||++|+|+.++.+ ++|+|.++|.+..
T Consensus 15 ~~l~~~~l~~~~~--~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~ 92 (265)
T PRK14252 15 QKSEVNKLNFYYG--GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV 92 (265)
T ss_pred ceEEEEEEEEEEC--CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccccc
Confidence 3588999999995 3579999999999999999999999999999999999986322 6999999997542
Q ss_pred -hhhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHHHcCCC----ccccccccCccCCCCC
Q 048718 582 -IQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPK-AEKVLVVERVIESLGLQ----HIRDSLVGTVEKRGIS 655 (1118)
Q Consensus 582 -~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~-~~~~~~v~~lL~~lgL~----~~~dt~vg~~~~rgLS 655 (1118)
...+++.++|++|++.+++. ||+||+.++.... .... ...++.+.++++.+++. +..++.++ .||
T Consensus 93 ~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~-----~LS 163 (265)
T PRK14252 93 DPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---GVKRRSILEERVENALRNAALWDEVKDRLGDLAF-----NLS 163 (265)
T ss_pred CHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---CCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcc-----cCC
Confidence 12356789999999999885 9999998875422 1111 22234577888888774 33445544 499
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEE
Q 048718 656 GGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVY 735 (1118)
Q Consensus 656 GGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~ 735 (1118)
|||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++. +.|||++||+++. +.+.+|++++|.+ |++++
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~~-~~~~~d~i~~l~~-G~i~~ 240 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQQ-AARVSDYTAYMYM-GELIE 240 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHHH-HHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999875 6899999999875 5578999999976 68999
Q ss_pred ecChhhH
Q 048718 736 HGPVKKV 742 (1118)
Q Consensus 736 ~G~~~~l 742 (1118)
.|+.+++
T Consensus 241 ~g~~~~~ 247 (265)
T PRK14252 241 FGATDTI 247 (265)
T ss_pred eCCHHHH
Confidence 9998765
No 256
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-37 Score=371.69 Aligned_cols=223 Identities=22% Similarity=0.369 Sum_probs=186.4
Q ss_pred EEEEEeEEEEEcC-CcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh----hhhc
Q 048718 512 EVAFKDLTITLKG-KNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI----QSYK 586 (1118)
Q Consensus 512 ~l~~knLs~~~~~-~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r 586 (1118)
.|+++||++.|.. +++++|+||||+|++||+++|+||||||||||||+|+|++++ +++|+|.++|+++.. ...+
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~ 337 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIA 337 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHH
Confidence 5899999998842 235699999999999999999999999999999999999862 379999999987632 2245
Q ss_pred CeEEEEcCCC---CCCCCCCHHHHHHHHHhhccCC-C-CCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHH
Q 048718 587 RIIGFVPQDD---IVHGNLTVEENLWFSARCRLSA-D-LPKAEKVLVVERVIESLGLQ-HIRDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 587 ~~IgyV~Qd~---~l~~~LTV~EnL~f~a~lr~~~-~-~~~~~~~~~v~~lL~~lgL~-~~~dt~vg~~~~rgLSGGERQ 660 (1118)
+.++|++|++ .+++.+||.||+.++....... . ....+.+..++++++.+||. +..++++++ |||||||
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgG~kq 412 (506)
T PRK13549 338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIAR-----LSGGNQQ 412 (506)
T ss_pred CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccccc-----CCHHHHH
Confidence 6799999995 4788899999998864211110 0 12233445688999999996 577888876 9999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
||+||+||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||+++. +.+++|++++|.+ |+++..|+++
T Consensus 413 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~-~~~~~d~v~~l~~-G~i~~~~~~~ 490 (506)
T PRK13549 413 KAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPE-VLGLSDRVLVMHE-GKLKGDLINH 490 (506)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHH-HHHhCCEEEEEEC-CEEEEEeccc
Confidence 9999999999999999999999999999999999999998889999999999975 4588999999976 6899988876
Q ss_pred hH
Q 048718 741 KV 742 (1118)
Q Consensus 741 ~l 742 (1118)
++
T Consensus 491 ~~ 492 (506)
T PRK13549 491 NL 492 (506)
T ss_pred cC
Confidence 54
No 257
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=6.1e-38 Score=388.57 Aligned_cols=214 Identities=28% Similarity=0.453 Sum_probs=179.6
Q ss_pred eEEEEEeEEEEEcCC-cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhc
Q 048718 511 IEVAFKDLTITLKGK-NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYK 586 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~-~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r 586 (1118)
..|+++||+|+|++. ++++|+|+|++|++||.++|+||||||||||+|+|+|+++ |.+|+|.+||++++ ...++
T Consensus 477 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~i~~~~~~~lr 554 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ--PTGGQVLLDGVPLVQYDHHYLH 554 (711)
T ss_pred CeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCEEEECCEEHHhcCHHHHH
Confidence 359999999999643 3679999999999999999999999999999999999998 68999999999864 35678
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCCCHHHH
Q 048718 587 RIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-------HIRDSLVGTVEKRGISGGQR 659 (1118)
Q Consensus 587 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-------~~~dt~vg~~~~rgLSGGER 659 (1118)
+.|+||+|++.+|. .|++|||.++.. +.+++ .+.++++..++. +..||.+|+ ....||||||
T Consensus 555 ~~i~~v~Q~~~lF~-gTIreNI~~g~~-----~~~~e----~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQk 623 (711)
T TIGR00958 555 RQVALVGQEPVLFS-GSVRENIAYGLT-----DTPDE----EIMAAAKAANAHDFIMEFPNGYDTEVGE-KGSQLSGGQK 623 (711)
T ss_pred hhceEEecCccccc-cCHHHHHhcCCC-----CCCHH----HHHHHHHHcCCHHHHHhCCCccCCcccC-CCCcCCHHHH
Confidence 89999999999996 599999998632 12222 245556655543 346777875 4567999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecCh
Q 048718 660 KRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPV 739 (1118)
Q Consensus 660 QRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~ 739 (1118)
||++|||||+++|+|||||||||+||+.++..+.+ .. ...++|+|+++|+++. .+.+|+|++|++ |++++.|+.
T Consensus 624 QRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~~--i~~aD~IivL~~-G~ive~Gt~ 697 (711)
T TIGR00958 624 QRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLST--VERADQILVLKK-GSVVEMGTH 697 (711)
T ss_pred HHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHHH--HHhCCEEEEEEC-CEEEEeeCH
Confidence 99999999999999999999999999999999888 22 2358999999999874 477999999976 699999999
Q ss_pred hhHH
Q 048718 740 KKVE 743 (1118)
Q Consensus 740 ~~l~ 743 (1118)
+++.
T Consensus 698 ~eL~ 701 (711)
T TIGR00958 698 KQLM 701 (711)
T ss_pred HHHH
Confidence 8875
No 258
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.6e-38 Score=312.62 Aligned_cols=217 Identities=27% Similarity=0.410 Sum_probs=192.1
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---------h
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---------I 582 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---------~ 582 (1118)
.|.++++++.| +..++|.||+++.+.||.+.++||||||||||++.|.=+.- |.+|+..|.|...+ .
T Consensus 2 sirv~~in~~y--g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~--p~sg~l~ia~~~fd~s~~~~~k~i 77 (242)
T COG4161 2 SIQLNGINCFY--GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFDFSKTPSDKAI 77 (242)
T ss_pred ceEEccccccc--ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC--CCCCeEEecccccccccCccHHHH
Confidence 47889999999 45689999999999999999999999999999999987766 68999999886432 1
Q ss_pred hhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 048718 583 QSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRV 662 (1118)
Q Consensus 583 ~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRV 662 (1118)
..+|+.+|+|||...++|+|||.|||.-+.. +. .++++++...+..+++++|.|.+.+|+.+-. |||||+|||
T Consensus 78 ~~lr~~vgmvfqqy~lwphltv~enlieap~-kv-~gl~~~qa~~~a~ellkrlrl~~~adr~plh-----lsggqqqrv 150 (242)
T COG4161 78 RDLRRNVGMVFQQYNLWPHLTVQENLIEAPC-RV-LGLSKDQALARAEKLLKRLRLKPYADRYPLH-----LSGGQQQRV 150 (242)
T ss_pred HHHHHhhhhhhhhhccCchhHHHHHHHhhhH-HH-hCCCHHHHHHHHHHHHHHhccccccccCcee-----cccchhhhH
Confidence 3578899999999999999999999976542 21 3567788888899999999999999987765 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhh
Q 048718 663 NVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKK 741 (1118)
Q Consensus 663 sIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~ 741 (1118)
+|||||+++|++|++||||++|||+-..+++++|++++..|.|-+++||..+.+ .+.+.+|+.|.+ |+||+.|+.+-
T Consensus 151 aiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va-~k~as~vvyme~-g~ive~g~a~~ 227 (242)
T COG4161 151 AIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVA-RKTASRVVYMEN-GHIVEQGDASC 227 (242)
T ss_pred HHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHH-HhhhhheEeeec-CeeEeecchhh
Confidence 999999999999999999999999999999999999999999999999998864 578899999976 69999998754
No 259
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.9e-37 Score=326.12 Aligned_cols=194 Identities=23% Similarity=0.338 Sum_probs=168.1
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh--hhhcCeEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI--QSYKRIIG 590 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~Ig 590 (1118)
+.++||+++|. ++++|+|+|++|++||+++|+||||||||||+++|+|+.+ +++|+|+++|+++.. ..+++.++
T Consensus 2 l~~~~l~~~~~--~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYH--DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIKKDLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeC--CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCccccCHHHHHhheE
Confidence 67899999994 4679999999999999999999999999999999999998 689999999987532 34677899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
|++|+..+++.+||+||+.+.... .. . ...++++++.+++.+..++.+++ |||||||||+|||||+.
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~--~~----~--~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~~rv~laral~~ 144 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHF--SP----G--AVGITELCRLFSLEHLIDYPCGL-----LSSGQKRQVALLRLWMS 144 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhc--Cc----c--hHHHHHHHHHcCCchhhhCChhh-----cCHHHHHHHHHHHHHhc
Confidence 999999888899999999987421 11 1 13578899999998877777765 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEE
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLI 725 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vi 725 (1118)
+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++.. .+.+|..+
T Consensus 145 ~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--~~~~d~~~ 197 (200)
T PRK13540 145 KAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP--LNKADYEE 197 (200)
T ss_pred CCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchh--ccccchhh
Confidence 999999999999999999999999999987779999999999764 35566543
No 260
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=2.1e-37 Score=324.24 Aligned_cols=179 Identities=29% Similarity=0.487 Sum_probs=154.6
Q ss_pred cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-----hhhcCeEEEEcCCCC--C
Q 048718 526 NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-----QSYKRIIGFVPQDDI--V 598 (1118)
Q Consensus 526 ~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-----~~~r~~IgyV~Qd~~--l 598 (1118)
++.+|+|+||+|++||+++|+|||||||||||++|+|+++ +++|+|.++|+++.. ..+++.++|++|++. +
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 4579999999999999999999999999999999999998 689999999987631 234667999999973 4
Q ss_pred CCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 048718 599 HGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILD 678 (1118)
Q Consensus 599 ~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLD 678 (1118)
+ .+||+||+.+..... .....+..+.++++++.+||.+..++++.+ |||||||||+|||||+.+|++||||
T Consensus 82 ~-~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllD 152 (190)
T TIGR01166 82 F-AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLD 152 (190)
T ss_pred c-cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 4 579999999875422 223334445688999999998888887765 9999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcH
Q 048718 679 EPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSY 715 (1118)
Q Consensus 679 EPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~ 715 (1118)
|||+|||+.++..+.+.|++++++|+|||++||+++.
T Consensus 153 EPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 153 EPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 9999999999999999999998779999999999763
No 261
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.5e-37 Score=342.93 Aligned_cols=214 Identities=20% Similarity=0.369 Sum_probs=179.5
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcCe
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKRI 588 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 588 (1118)
.|+++||++.|..+...+|+||||+|++||+++|+|||||||||||++|+|+++ .+|+|.++|.++. ...+++.
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEhhhCCHHHHhhh
Confidence 478999999996444679999999999999999999999999999999999986 5799999998763 2456788
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccC------ccCCCCCHHHHHHH
Q 048718 589 IGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGT------VEKRGISGGQRKRV 662 (1118)
Q Consensus 589 IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~------~~~rgLSGGERQRV 662 (1118)
|+|+||++.+|+. ||+||+.... .... +.+.++++.+||.+..+..++. .....|||||||||
T Consensus 79 i~~v~q~~~lf~~-tv~~nl~~~~------~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl 147 (275)
T cd03289 79 FGVIPQKVFIFSG-TFRKNLDPYG------KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLM 147 (275)
T ss_pred EEEECCCcccchh-hHHHHhhhcc------CCCH----HHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHH
Confidence 9999999999975 9999996421 1122 2356778888987655554432 13456999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 663 NVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 663 sIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
+|||||+.+|+||||||||++||+.+...+.+.|+++. .++|||+++|+++. + ..+|++++|.+ |++++.|+++++
T Consensus 148 ~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~~-i-~~~dri~vl~~-G~i~~~g~~~~l 223 (275)
T cd03289 148 CLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIEA-M-LECQRFLVIEE-NKVRQYDSIQKL 223 (275)
T ss_pred HHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHHH-H-HhCCEEEEecC-CeEeecCCHHHH
Confidence 99999999999999999999999999999999999764 58999999999864 4 45999999976 689999999887
Q ss_pred H
Q 048718 743 E 743 (1118)
Q Consensus 743 ~ 743 (1118)
.
T Consensus 224 ~ 224 (275)
T cd03289 224 L 224 (275)
T ss_pred h
Confidence 5
No 262
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.5e-37 Score=374.18 Aligned_cols=219 Identities=28% Similarity=0.484 Sum_probs=181.5
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcC
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKR 587 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 587 (1118)
..++++|++++|+.+++++|+|+|+++++||.++|+||||||||||+++|+|+++ |.+|+|.+||.++. ...+++
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~i~~~~~~~~~~ 392 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADLKQWDRETFGK 392 (544)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEehhhCCHHHHhh
Confidence 3699999999996545689999999999999999999999999999999999998 68999999998764 345788
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHH-----HHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKV-----LVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRV 662 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~-----~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRV 662 (1118)
.++||+|++.+|+. |++||+.+... ...+++.. ...++.++.+ .+..|+.+|+ ....||||||||+
T Consensus 393 ~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~~-~g~~LSgGq~qrl 463 (544)
T TIGR01842 393 HIGYLPQDVELFPG-TVAENIARFGE-----NADPEKIIEAAKLAGVHELILRL--PDGYDTVIGP-GGATLSGGQRQRI 463 (544)
T ss_pred heEEecCCcccccc-cHHHHHhccCC-----CCCHHHHHHHHHHhChHHHHHhC--ccccccccCC-CcCCCCHHHHHHH
Confidence 99999999999976 99999985421 12222211 1233444444 3334666665 4567999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 663 NVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 663 sIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
+|||||+++|++|||||||+|||+.++..+.+.|+++..+|+|+|+++|+++. .+.+|++++|++ |++++.|+.+++
T Consensus 464 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~--~~~~d~i~~l~~-G~i~~~g~~~~l 540 (544)
T TIGR01842 464 ALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSL--LGCVDKILVLQD-GRIARFGERDEV 540 (544)
T ss_pred HHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHH--HHhCCEEEEEEC-CEEEeeCCHHHH
Confidence 99999999999999999999999999999999999887668999999999874 478999999976 689999998776
Q ss_pred H
Q 048718 743 E 743 (1118)
Q Consensus 743 ~ 743 (1118)
.
T Consensus 541 ~ 541 (544)
T TIGR01842 541 L 541 (544)
T ss_pred h
Confidence 4
No 263
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.3e-37 Score=330.74 Aligned_cols=208 Identities=24% Similarity=0.416 Sum_probs=170.0
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcCeE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKRII 589 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~I 589 (1118)
++++||+++|.+.++.+|+|+||+|++||+++|+||||||||||+++|+|+.+ +.+|+|.++|.++. ...+++.+
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE--LSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEhHhCCHHHHhhhE
Confidence 78999999996444579999999999999999999999999999999999987 68999999998753 23467789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccc-------cccCccCCCCCHHHHHHH
Q 048718 590 GFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDS-------LVGTVEKRGISGGQRKRV 662 (1118)
Q Consensus 590 gyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt-------~vg~~~~rgLSGGERQRV 662 (1118)
+|++|++.+++ .||+||+.+... ... ..+.+.++.+++.+..++ ..+ ..++.|||||||||
T Consensus 81 ~~~~q~~~l~~-~tv~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~~-~~~~~LS~G~~qr~ 148 (221)
T cd03244 81 SIIPQDPVLFS-GTIRSNLDPFGE------YSD----EELWQALERVGLKEFVESLPGGLDTVVE-EGGENLSVGQRQLL 148 (221)
T ss_pred EEECCCCcccc-chHHHHhCcCCC------CCH----HHHHHHHHHhCcHHHHHhcccccccccc-cCCCcCCHHHHHHH
Confidence 99999998776 599999975321 111 234555666666543321 111 13456999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecC
Q 048718 663 NVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGP 738 (1118)
Q Consensus 663 sIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~ 738 (1118)
+|||+|+.+|++|||||||+|||+.++..+.+.|+++.. +.|||+++|+++.. ..+|++++|.+ |++++.|+
T Consensus 149 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~--~~~d~i~~l~~-g~~~~~~~ 220 (221)
T cd03244 149 CLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDTI--IDSDRILVLDK-GRVVEFDS 220 (221)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHH--hhCCEEEEEEC-CeEEecCC
Confidence 999999999999999999999999999999999998854 68999999998754 35999999976 68888775
No 264
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=6.3e-37 Score=329.57 Aligned_cols=202 Identities=28% Similarity=0.396 Sum_probs=170.0
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFV 592 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV 592 (1118)
+.++++++.| +++++|+|+||+|++||+++|+||||||||||+++|+|+++ +++|+|.++|++... .
T Consensus 23 l~~~~~~~~~--~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~ 89 (224)
T cd03220 23 LGILGRKGEV--GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------L 89 (224)
T ss_pred hhhhhhhhhc--CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------h
Confidence 6678888888 34789999999999999999999999999999999999987 689999999986421 1
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCC
Q 048718 593 PQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEP 672 (1118)
Q Consensus 593 ~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P 672 (1118)
.+...+++.+||+||+.+..... .....+.+..++++++.+||.+..++.+++ |||||||||+|||+|+.+|
T Consensus 90 ~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~laral~~~p 161 (224)
T cd03220 90 GLGGGFNPELTGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPVKT-----YSSGMKARLAFAIATALEP 161 (224)
T ss_pred cccccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHHHHHHHHhcCC
Confidence 11233456799999999876432 123334445678899999999888888765 9999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEec
Q 048718 673 SLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHG 737 (1118)
Q Consensus 673 ~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G 737 (1118)
++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +.+.+|++++|.+ |++++.|
T Consensus 162 ~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 162 DILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSS-IKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEecC
Confidence 9999999999999999999999999988778999999999875 4578999999975 6887755
No 265
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-37 Score=317.93 Aligned_cols=169 Identities=34% Similarity=0.536 Sum_probs=153.1
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh--hhhcCeEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI--QSYKRIIG 590 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~Ig 590 (1118)
++++||++.|. ++++|+|+|+++++||+++|+|||||||||||++|+|+++ +.+|+|.++|++... ..+++.++
T Consensus 1 l~~~~l~~~~~--~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYG--KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKKEPEEVKRRIG 76 (173)
T ss_pred CEEEEEEEEEC--CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccchHhhhccEE
Confidence 36889999995 3579999999999999999999999999999999999997 689999999987642 34567899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
|++|++.+++.+||.||+. |||||||||+|||||+.
T Consensus 77 ~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~qrv~laral~~ 112 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQRLALAQALLH 112 (173)
T ss_pred EEecCCccccCCcHHHHhh--------------------------------------------cCHHHHHHHHHHHHHHc
Confidence 9999999999899999973 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecC
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKG 730 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~G 730 (1118)
+|++|+|||||+|||+.++..+.+.|++++++|.|+|++||+++. +.+.+|++++|.+|
T Consensus 113 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~-~~~~~d~i~~l~~g 171 (173)
T cd03230 113 DPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEE-AERLCDRVAILNNG 171 (173)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH-HHHhCCEEEEEeCC
Confidence 999999999999999999999999999998778999999999875 45789999999764
No 266
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=5.8e-37 Score=335.65 Aligned_cols=201 Identities=27% Similarity=0.450 Sum_probs=173.6
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEE
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGF 591 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 591 (1118)
.++++||++.|. ++.+|+|+||+|++||+++|+|||||||||||++|+|+++ +++|+|.++| +..++|
T Consensus 4 ~l~~~~l~~~~~--~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~~--------~~~i~~ 71 (251)
T PRK09544 4 LVSLENVSVSFG--QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--PDEGVIKRNG--------KLRIGY 71 (251)
T ss_pred EEEEeceEEEEC--CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECC--------ccCEEE
Confidence 478999999995 3579999999999999999999999999999999999998 6899999987 235999
Q ss_pred EcCCCCCCCC--CCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 048718 592 VPQDDIVHGN--LTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMV 669 (1118)
Q Consensus 592 V~Qd~~l~~~--LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl 669 (1118)
++|++.+++. .|+.+++.+.. ... ...+.++++.+||.+..++.+.+ |||||||||+||+||+
T Consensus 72 v~q~~~~~~~l~~~~~~~~~~~~------~~~----~~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qrv~laral~ 136 (251)
T PRK09544 72 VPQKLYLDTTLPLTVNRFLRLRP------GTK----KEDILPALKRVQAGHLIDAPMQK-----LSGGETQRVLLARALL 136 (251)
T ss_pred eccccccccccChhHHHHHhccc------ccc----HHHHHHHHHHcCChHHHhCChhh-----CCHHHHHHHHHHHHHh
Confidence 9999887775 47888765421 111 13467899999999888887765 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 670 MEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 670 ~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++. +.+.+|++++|. + ++++.|+++++
T Consensus 137 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~-i~~~~d~i~~l~-~-~i~~~g~~~~~ 207 (251)
T PRK09544 137 NRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHL-VMAKTDEVLCLN-H-HICCSGTPEVV 207 (251)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEC-C-ceEeeCCHHHH
Confidence 999999999999999999999999999998865 8999999999875 457899999994 4 58899988765
No 267
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.5e-37 Score=333.53 Aligned_cols=210 Identities=26% Similarity=0.404 Sum_probs=170.9
Q ss_pred ceEEEEEeEEEEEcCC-cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhh
Q 048718 510 TIEVAFKDLTITLKGK-NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSY 585 (1118)
Q Consensus 510 ~~~l~~knLs~~~~~~-~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~ 585 (1118)
...++++||++.|.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|+++ +++|+|.++|+++.. ..+
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~ 86 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ--PQGGQVLLDGKPISQYEHKYL 86 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCCchHHcCHHHH
Confidence 3468999999999642 2469999999999999999999999999999999999997 689999999976532 234
Q ss_pred cCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHc--CCCccccccccCccCCCCCHHHHHHHH
Q 048718 586 KRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESL--GLQHIRDSLVGTVEKRGISGGQRKRVN 663 (1118)
Q Consensus 586 r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~l--gL~~~~dt~vg~~~~rgLSGGERQRVs 663 (1118)
++.++|++|++.+++ .||+||+.++.................++++++.+ |+.+..+..+.+ |||||||||+
T Consensus 87 ~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~-----LSgG~~qrv~ 160 (226)
T cd03248 87 HSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQ-----LSGGQKQRVA 160 (226)
T ss_pred HhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCc-----CCHHHHHHHH
Confidence 677999999998876 59999998754311000000111122356788888 787777766654 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecC
Q 048718 664 VGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKG 730 (1118)
Q Consensus 664 IArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~G 730 (1118)
||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|+|++||+++.. ..+|++++|.+|
T Consensus 161 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~--~~~d~i~~l~~g 224 (226)
T cd03248 161 IARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLSTV--ERADQILVLDGG 224 (226)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHHH--HhCCEEEEecCC
Confidence 99999999999999999999999999999999999865 68999999999764 459999999763
No 268
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=3.3e-37 Score=374.49 Aligned_cols=214 Identities=28% Similarity=0.460 Sum_probs=180.7
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcCe
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKRI 588 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 588 (1118)
.++++||+|+|+. ++++|+|+|+++++||.++|+|+||||||||+|+|+|+++ |.+|+|.+||.+++ ...+++.
T Consensus 334 ~I~~~~vsf~y~~-~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~--p~~G~I~i~g~~i~~~~~~~~r~~ 410 (588)
T PRK13657 334 AVEFDDVSFSYDN-SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD--PQSGRILIDGTDIRTVTRASLRRN 410 (588)
T ss_pred eEEEEEEEEEeCC-CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEEhhhCCHHHHHhh
Confidence 5999999999963 3579999999999999999999999999999999999998 68999999998764 3567889
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCCCCCHHHHHH
Q 048718 589 IGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGL-------QHIRDSLVGTVEKRGISGGQRKR 661 (1118)
Q Consensus 589 IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL-------~~~~dt~vg~~~~rgLSGGERQR 661 (1118)
|+||+|++.+|+. |++|||.++.. +..+++ +.++++.+|+ ++..|+.+++ ..+.||||||||
T Consensus 411 i~~v~Q~~~lf~~-Ti~~Ni~~~~~-----~~~d~~----i~~al~~~~l~~~i~~lp~gldt~i~~-~g~~LSgGq~QR 479 (588)
T PRK13657 411 IAVVFQDAGLFNR-SIEDNIRVGRP-----DATDEE----MRAAAERAQAHDFIERKPDGYDTVVGE-RGRQLSGGERQR 479 (588)
T ss_pred eEEEecCcccccc-cHHHHHhcCCC-----CCCHHH----HHHHHHHhCHHHHHHhCcccccchhcC-CCCCCCHHHHHH
Confidence 9999999999965 99999988621 222322 3444555444 3445777775 455699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhh
Q 048718 662 VNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKK 741 (1118)
Q Consensus 662 VsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~ 741 (1118)
++|||||+++|+||+||||||+||+.++..+.+.|+++. .++|+|++||+++. .+.+|++++|.+ |++++.|+.++
T Consensus 480 ialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~~--~~~~D~ii~l~~-G~i~~~g~~~~ 555 (588)
T PRK13657 480 LAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLST--VRNADRILVFDN-GRVVESGSFDE 555 (588)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHHH--HHhCCEEEEEEC-CEEEEeCCHHH
Confidence 999999999999999999999999999999999998874 47999999999864 478999999976 68999999877
Q ss_pred HH
Q 048718 742 VE 743 (1118)
Q Consensus 742 l~ 743 (1118)
+.
T Consensus 556 l~ 557 (588)
T PRK13657 556 LV 557 (588)
T ss_pred HH
Confidence 63
No 269
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-38 Score=362.37 Aligned_cols=215 Identities=27% Similarity=0.457 Sum_probs=187.4
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcCe
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKRI 588 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 588 (1118)
.++++||+|+|++...++|+|+||++++||.+||+|+||||||||+.+|.|.++ +++|+|++||.++. .+.+++.
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~--~~~G~i~~~g~~~~~l~~~~~~e~ 413 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEIASLDEQALRET 413 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC--CCCCeeeECCcChhhCChhhHHHH
Confidence 689999999998776789999999999999999999999999999999999998 68999999998753 3457889
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCCCCCHHHHHH
Q 048718 589 IGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH-------IRDSLVGTVEKRGISGGQRKR 661 (1118)
Q Consensus 589 IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~-------~~dt~vg~~~~rgLSGGERQR 661 (1118)
|++++|...+|.. |+++||.++.. +.++++ +.++++.+||++ ..|+.+|+ ..+.||||||||
T Consensus 414 i~vl~Qr~hlF~~-Tlr~NL~lA~~-----~AsDEe----l~~aL~qvgL~~l~~~~p~gl~t~lge-~G~~LSGGE~rR 482 (573)
T COG4987 414 ISVLTQRVHLFSG-TLRDNLRLANP-----DASDEE----LWAALQQVGLEKLLESAPDGLNTWLGE-GGRRLSGGERRR 482 (573)
T ss_pred HhhhccchHHHHH-HHHHHHhhcCC-----CCCHHH----HHHHHHHcCHHHHHHhChhhhhchhcc-CCCcCCchHHHH
Confidence 9999999999865 99999998742 233333 567777777754 34667776 677899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhh
Q 048718 662 VNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKK 741 (1118)
Q Consensus 662 VsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~ 741 (1118)
++|||+|++|.++++|||||.|||+.+++++++.|.+-+ +|+|+|++||+.... +.||+|++|++ |++++.|...+
T Consensus 483 LAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~-~~kTll~vTHrL~~l--e~~drIivl~~-Gkiie~G~~~~ 558 (573)
T COG4987 483 LALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLRGL--ERMDRIIVLDN-GKIIEEGTHAE 558 (573)
T ss_pred HHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh-cCCeEEEEecccccH--hhcCEEEEEEC-CeeeecCCHHh
Confidence 999999999999999999999999999999999997755 489999999998753 78999999976 69999999988
Q ss_pred HH
Q 048718 742 VE 743 (1118)
Q Consensus 742 l~ 743 (1118)
+.
T Consensus 559 Ll 560 (573)
T COG4987 559 LL 560 (573)
T ss_pred hh
Confidence 75
No 270
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-37 Score=368.06 Aligned_cols=215 Identities=20% Similarity=0.333 Sum_probs=181.2
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh----hhhcC
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI----QSYKR 587 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r~ 587 (1118)
.++++||++.+ + .+|+|+||+|++||+++|+||||||||||||+|+|+.+ |++|+|.++|+++.. ...++
T Consensus 265 ~l~~~~l~~~~--~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~ 338 (510)
T PRK09700 265 VFEVRNVTSRD--R--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK--RAGGEIRLNGKDISPRSPLDAVKK 338 (510)
T ss_pred EEEEeCccccC--C--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCEECCCCCHHHHHHC
Confidence 58999999865 2 38999999999999999999999999999999999997 689999999987532 23456
Q ss_pred eEEEEcCC---CCCCCCCCHHHHHHHHHhhc---cCC--C-CCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHH
Q 048718 588 IIGFVPQD---DIVHGNLTVEENLWFSARCR---LSA--D-LPKAEKVLVVERVIESLGLQ-HIRDSLVGTVEKRGISGG 657 (1118)
Q Consensus 588 ~IgyV~Qd---~~l~~~LTV~EnL~f~a~lr---~~~--~-~~~~~~~~~v~~lL~~lgL~-~~~dt~vg~~~~rgLSGG 657 (1118)
.||||+|+ ..+++.+||.||+.++...+ ... . ......+..++++++.+||. +..++++++ ||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgG 413 (510)
T PRK09700 339 GMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITE-----LSGG 413 (510)
T ss_pred CcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcccc-----CChH
Confidence 79999998 46888999999998764211 000 1 11222334678999999997 778888876 9999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEec
Q 048718 658 QRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHG 737 (1118)
Q Consensus 658 ERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G 737 (1118)
|||||+|||+|+.+|+||||||||+|||+.++..+++.|++++++|.|||++|||++. +.+.+|++++|.+ |++++.+
T Consensus 414 q~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~-~~~~~d~i~~l~~-G~i~~~~ 491 (510)
T PRK09700 414 NQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPE-IITVCDRIAVFCE-GRLTQIL 491 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH-HHhhCCEEEEEEC-CEEEEEe
Confidence 9999999999999999999999999999999999999999998789999999999875 4588999999976 6888877
Q ss_pred Ch
Q 048718 738 PV 739 (1118)
Q Consensus 738 ~~ 739 (1118)
+.
T Consensus 492 ~~ 493 (510)
T PRK09700 492 TN 493 (510)
T ss_pred cC
Confidence 65
No 271
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.4e-37 Score=318.05 Aligned_cols=171 Identities=32% Similarity=0.541 Sum_probs=153.9
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-----hhhcC
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-----QSYKR 587 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-----~~~r~ 587 (1118)
++++||++.|. ++++|+|+||++++||+++|+||||||||||+++|+|+++ +++|+|.++|.++.. ..+++
T Consensus 1 i~~~~l~~~~~--~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (178)
T cd03229 1 LELKNVSKRYG--QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTDLEDELPPLRR 76 (178)
T ss_pred CEEEEEEEEEC--CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccchhHHHHhh
Confidence 46899999994 3679999999999999999999999999999999999997 689999999987532 34567
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
.++|++|++.+++.+|++||+.+. |||||||||+||+|
T Consensus 77 ~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G~~qr~~la~a 114 (178)
T cd03229 77 RIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGGQQQRVALARA 114 (178)
T ss_pred cEEEEecCCccCCCCCHHHheeec------------------------------------------CCHHHHHHHHHHHH
Confidence 899999999999889999987642 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecC
Q 048718 668 MVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKG 730 (1118)
Q Consensus 668 Ll~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~G 730 (1118)
|+.+|++++|||||+|||+.++..+.+.|++++++ |.|+|+++|+++. +.+.+|++++|.+|
T Consensus 115 l~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~g 177 (178)
T cd03229 115 LAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDE-AARLADRVVVLRDG 177 (178)
T ss_pred HHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCEEEEEeCC
Confidence 99999999999999999999999999999999877 8999999999875 45689999999764
No 272
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=3e-37 Score=372.91 Aligned_cols=217 Identities=28% Similarity=0.461 Sum_probs=183.8
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcC
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKR 587 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 587 (1118)
..++++||+++|+..++.+|+|+|++|++||.++|+|+||||||||+++|+|+++ |.+|+|++||.+++ ...+++
T Consensus 329 ~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~--~~~G~I~i~g~~i~~~~~~~~~~ 406 (571)
T TIGR02203 329 GDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE--PDSGQILLDGHDLADYTLASLRR 406 (571)
T ss_pred CeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEeHHhcCHHHHHh
Confidence 3599999999996545679999999999999999999999999999999999998 68999999998764 356788
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCCCHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-------HIRDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-------~~~dt~vg~~~~rgLSGGERQ 660 (1118)
.|+||+|++.+|+. |++|||.++.. ++.+++ .++++++.+||. +..|+.+|+ ..+.|||||||
T Consensus 407 ~i~~v~Q~~~lf~~-Ti~~Ni~~~~~----~~~~~~----~i~~~l~~~~l~~~i~~lp~gldt~i~~-~g~~LSgGqrQ 476 (571)
T TIGR02203 407 QVALVSQDVVLFND-TIANNIAYGRT----EQADRA----EIERALAAAYAQDFVDKLPLGLDTPIGE-NGVLLSGGQRQ 476 (571)
T ss_pred hceEEccCcccccc-cHHHHHhcCCC----CCCCHH----HHHHHHHHcChHHHHHhCcCcccceecC-CCCcCCHHHHH
Confidence 99999999999865 99999987631 122332 355566666553 346777876 35679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
|++||||++++|+||+|||||++||+.++..+++.|+++. .++|+|++||+++. .+.+|++++|.+ |+++..|+.+
T Consensus 477 RiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~~--~~~~D~ii~l~~-g~i~~~g~~~ 552 (571)
T TIGR02203 477 RLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLST--IEKADRIVVMDD-GRIVERGTHN 552 (571)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhHH--HHhCCEEEEEeC-CEEEeeCCHH
Confidence 9999999999999999999999999999999999998874 57999999999864 578999999976 6999999988
Q ss_pred hHH
Q 048718 741 KVE 743 (1118)
Q Consensus 741 ~l~ 743 (1118)
++.
T Consensus 553 ~l~ 555 (571)
T TIGR02203 553 ELL 555 (571)
T ss_pred HHH
Confidence 763
No 273
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=5.1e-37 Score=366.07 Aligned_cols=221 Identities=25% Similarity=0.375 Sum_probs=184.3
Q ss_pred EEEEEeEEEEEcC-CcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh----hhhc
Q 048718 512 EVAFKDLTITLKG-KNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI----QSYK 586 (1118)
Q Consensus 512 ~l~~knLs~~~~~-~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r 586 (1118)
.++++|+++.|.+ +++.+|+|+||+|++||+++|+||||||||||||+|+|+.++ +.+|+|.++|+++.. ..++
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~ 335 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIR 335 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHh
Confidence 5899999998842 235699999999999999999999999999999999999972 369999999987632 2346
Q ss_pred CeEEEEcCCC---CCCCCCCHHHHHHHHHhhccC--CCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHH
Q 048718 587 RIIGFVPQDD---IVHGNLTVEENLWFSARCRLS--ADLPKAEKVLVVERVIESLGLQH-IRDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 587 ~~IgyV~Qd~---~l~~~LTV~EnL~f~a~lr~~--~~~~~~~~~~~v~~lL~~lgL~~-~~dt~vg~~~~rgLSGGERQ 660 (1118)
+.+|||+|+. .+++.+||+||+.++...... ........+..++++++.++|.+ ..++++++ |||||||
T Consensus 336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGqkq 410 (500)
T TIGR02633 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGR-----LSGGNQQ 410 (500)
T ss_pred CCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcccc-----CCHHHHH
Confidence 7899999995 588899999999886421110 01223334456889999999974 57888776 9999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
||+||++|+.+|+||||||||+|||+.++..+++.|++++++|.|||++|||++. +.+++|++++|.+ |+++..++.+
T Consensus 411 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~-~~~~~d~v~~l~~-G~i~~~~~~~ 488 (500)
T TIGR02633 411 KAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAE-VLGLSDRVLVIGE-GKLKGDFVNH 488 (500)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHH-HHHhCCEEEEEEC-CEEEEEEccc
Confidence 9999999999999999999999999999999999999998889999999999975 4688999999976 6888777554
No 274
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=6.5e-37 Score=335.77 Aligned_cols=215 Identities=22% Similarity=0.358 Sum_probs=172.4
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcC
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKR 587 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~ 587 (1118)
..++++||++.|+...+.+|+|+||+|++||+++|+|+||||||||+++|+|+++ +.+|+|.++|+++.. ..+++
T Consensus 18 ~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD--IFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred ceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC--CCCCeEEECCEEhhhCCHHHHhh
Confidence 4589999999996433579999999999999999999999999999999999997 689999999987632 34577
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHH-----HHHHHHHHHHc--CCCccccccccCccCCCCCHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEK-----VLVVERVIESL--GLQHIRDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~-----~~~v~~lL~~l--gL~~~~dt~vg~~~~rgLSGGERQ 660 (1118)
.|+|++|++.+++ .||+||+..... ...... ...++++++.+ |+....+.. .+.|||||||
T Consensus 96 ~i~~v~q~~~l~~-~tv~~nl~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~-----~~~LS~G~~q 163 (257)
T cd03288 96 RLSIILQDPILFS-GSIRFNLDPECK------CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEG-----GENFSVGQRQ 163 (257)
T ss_pred hEEEECCCCcccc-cHHHHhcCcCCC------CCHHHHHHHHHHhCcHHHHhhcccccCcEeccC-----CCcCCHHHHH
Confidence 8999999998886 599999854210 111110 11233344444 444333333 3459999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
||+|||||+.+|++|||||||+|||+.++..+.+.|+++. ++.|||+++|+++.. . .+|++++|.+ |++++.|+++
T Consensus 164 rl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~-~-~~dri~~l~~-G~i~~~g~~~ 239 (257)
T cd03288 164 LFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVSTI-L-DADLVLVLSR-GILVECDTPE 239 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHHH-H-hCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999999999999999998864 589999999999864 3 4999999976 6899999987
Q ss_pred hHH
Q 048718 741 KVE 743 (1118)
Q Consensus 741 ~l~ 743 (1118)
++.
T Consensus 240 ~~~ 242 (257)
T cd03288 240 NLL 242 (257)
T ss_pred HHH
Confidence 764
No 275
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=3.6e-37 Score=380.93 Aligned_cols=216 Identities=26% Similarity=0.454 Sum_probs=182.2
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcC
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKR 587 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 587 (1118)
..++++||+++|+..++.+|+|+|++|++||.++|+|+||||||||+|+|+|+++ |.+|+|++||.++. ...+|+
T Consensus 454 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~--p~~G~I~idg~~i~~~~~~~~r~ 531 (694)
T TIGR01846 454 GAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT--PQHGQVLVDGVDLAIADPAWLRR 531 (694)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEehhhCCHHHHHH
Confidence 4699999999996555679999999999999999999999999999999999998 68999999998864 356788
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCCCCCHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGL-------QHIRDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL-------~~~~dt~vg~~~~rgLSGGERQ 660 (1118)
.|+||+|++.+|+. |++|||.++.. +.+.++ +.++++..++ .+..|+.+++ ....|||||||
T Consensus 532 ~i~~v~q~~~lf~~-ti~eNi~~~~~-----~~~~~~----i~~a~~~~~l~~~i~~lp~gl~t~i~~-~g~~LSgGq~q 600 (694)
T TIGR01846 532 QMGVVLQENVLFSR-SIRDNIALCNP-----GAPFEH----VIHAAKLAGAHDFISELPQGYNTEVGE-KGANLSGGQRQ 600 (694)
T ss_pred hCeEEccCCeehhh-hHHHHHhcCCC-----CCCHHH----HHHHHHHcChHHHHHhCcCccCcEecC-CCCCCCHHHHH
Confidence 99999999999964 99999987521 222222 3344444443 3346777776 45679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
|++|||||+++|+||||||||++||+.++..+.+.|+++. .++|+|++||+++. .+.+|++++|++ |++++.|+.+
T Consensus 601 ri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~ii~l~~-G~i~~~g~~~ 676 (694)
T TIGR01846 601 RIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLST--VRACDRIIVLEK-GQIAESGRHE 676 (694)
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHH--HHhCCEEEEEeC-CEEEEeCCHH
Confidence 9999999999999999999999999999999999999874 58999999999874 367999999976 6999999988
Q ss_pred hHH
Q 048718 741 KVE 743 (1118)
Q Consensus 741 ~l~ 743 (1118)
++.
T Consensus 677 ~l~ 679 (694)
T TIGR01846 677 ELL 679 (694)
T ss_pred HHH
Confidence 764
No 276
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.2e-37 Score=356.17 Aligned_cols=217 Identities=28% Similarity=0.434 Sum_probs=193.4
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh----hhhc
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI----QSYK 586 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r 586 (1118)
..++++|++++|+ ..++|+||||++.+||++||+|.||||||||+|+|+|.++ |++|+|.++|++... ....
T Consensus 7 ~ll~~~~i~K~Fg--gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~--p~~G~I~~~G~~~~~~sp~~A~~ 82 (500)
T COG1129 7 PLLELRGISKSFG--GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP--PDSGEILIDGKPVAFSSPRDALA 82 (500)
T ss_pred ceeeeecceEEcC--CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc--CCCceEEECCEEccCCCHHHHHh
Confidence 3588999999994 4789999999999999999999999999999999999998 799999999998642 2345
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 048718 587 RIIGFVPQDDIVHGNLTVEENLWFSARCRLS-ADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVG 665 (1118)
Q Consensus 587 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~-~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIA 665 (1118)
..|+.|+|+..+.|+|||.|||.++.....+ .-+.....+++..++|+.+|+....++++++ ||+||||.|.||
T Consensus 83 ~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~-----LsiaqrQ~VeIA 157 (500)
T COG1129 83 AGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGD-----LSIAQRQMVEIA 157 (500)
T ss_pred CCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhh-----CCHHHHHHHHHH
Confidence 6799999999999999999999988654331 2345566677899999999996558888887 999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecC
Q 048718 666 LEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGP 738 (1118)
Q Consensus 666 rALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~ 738 (1118)
|||..+++||||||||++|+......+++.+++++.+|.+||+|||.+++ +++++|++.||.+ |+.+..++
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~E-i~~i~DritVlRD-G~~v~~~~ 228 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDE-VFEIADRITVLRD-GRVVGTRP 228 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHH-HHHhcCEEEEEeC-CEEeeecc
Confidence 99999999999999999999999999999999999999999999999975 7899999999976 68888777
No 277
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=5.8e-37 Score=364.73 Aligned_cols=209 Identities=21% Similarity=0.292 Sum_probs=179.5
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcCe
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKRI 588 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 588 (1118)
.|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||||+|+|+++ +++|+|.++|.+.. ....++.
T Consensus 3 ~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~--p~~G~i~~~~~~~~~~~~~~~~~~ 78 (490)
T PRK10938 3 SLQISQGTFRLS--DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP--LLSGERQSQFSHITRLSFEQLQKL 78 (490)
T ss_pred eEEEEeEEEEcC--CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCceEEECCcccccCCHHHHHHH
Confidence 488999999994 3569999999999999999999999999999999999997 68999999986542 1234566
Q ss_pred EEEEcCCCCC--C------CCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 048718 589 IGFVPQDDIV--H------GNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 589 IgyV~Qd~~l--~------~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQ 660 (1118)
++|++|++.+ + ..+||+|++.+.. ....+++++++.+||.+..++++++ |||||||
T Consensus 79 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~q 142 (490)
T PRK10938 79 VSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEV-----------KDPARCEQLAQQFGITALLDRRFKY-----LSTGETR 142 (490)
T ss_pred hceeccCcchhhcccchhhccccHHHhcccch-----------hHHHHHHHHHHHcCCHhhhhCCccc-----CCHHHHH
Confidence 9999998643 1 1478888875421 1234678999999999888888876 9999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +.+.+|++++|.+ |++++.|+++
T Consensus 143 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~-~~~~~d~v~~l~~-G~i~~~~~~~ 220 (490)
T PRK10938 143 KTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDE-IPDFVQFAGVLAD-CTLAETGERE 220 (490)
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHH-HHhhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999999999999999999998779999999999875 5688999999976 6899999887
Q ss_pred hH
Q 048718 741 KV 742 (1118)
Q Consensus 741 ~l 742 (1118)
++
T Consensus 221 ~~ 222 (490)
T PRK10938 221 EI 222 (490)
T ss_pred HH
Confidence 65
No 278
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=1.5e-36 Score=321.13 Aligned_cols=190 Identities=27% Similarity=0.387 Sum_probs=160.4
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hh-hcCe
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QS-YKRI 588 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~-~r~~ 588 (1118)
++++||++.|. ++.+|+|+||++++||+++|+|+||||||||+++|+|+....+++|+|.++|+++.. .. .+..
T Consensus 1 l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVG--GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeC--CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 46899999995 357999999999999999999999999999999999995211689999999987642 12 2456
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 048718 589 IGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEM 668 (1118)
Q Consensus 589 IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArAL 668 (1118)
++|++|++.+++.+|+++++. ... +.|||||||||+|||+|
T Consensus 79 i~~v~q~~~~~~~~~~~~~l~----------------------------------~~~-----~~LS~G~~qrv~laral 119 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFLR----------------------------------YVN-----EGFSGGEKKRNEILQLL 119 (200)
T ss_pred EEEeecChhhccCccHHHHHh----------------------------------hcc-----ccCCHHHHHHHHHHHHH
Confidence 999999999998889888760 011 24999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHh-ccCcEEEEecCcEEEEecChhhHHHHH
Q 048718 669 VMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFR-MFDDLILLAKGGVIVYHGPVKKVEEYF 746 (1118)
Q Consensus 669 l~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~-~~D~vivL~~GG~iv~~G~~~~l~~yf 746 (1118)
+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||+++. +.+ .+|++++|.+ |++++.|+.+ +.+++
T Consensus 120 ~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~-~~~~~~d~i~~l~~-G~i~~~~~~~-~~~~~ 195 (200)
T cd03217 120 LLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRL-LDYIKPDRVHVLYD-GRIVKSGDKE-LALEI 195 (200)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhhCCEEEEEEC-CEEEEEccHH-HHhhh
Confidence 99999999999999999999999999999988778999999999874 445 6999999976 6899999554 54444
No 279
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-36 Score=330.27 Aligned_cols=211 Identities=21% Similarity=0.292 Sum_probs=178.0
Q ss_pred EEEEEeEEEEEcC------------------CcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEE
Q 048718 512 EVAFKDLTITLKG------------------KNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTI 573 (1118)
Q Consensus 512 ~l~~knLs~~~~~------------------~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I 573 (1118)
.+.++||++.|.. ..+.+|+|+||+|++||+++|+|||||||||||++|+|+++ +.+|+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G~I 81 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVGKV 81 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEE
Confidence 4667777766642 23469999999999999999999999999999999999998 689999
Q ss_pred EECCEecChhhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCC
Q 048718 574 LVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRG 653 (1118)
Q Consensus 574 ~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rg 653 (1118)
.++|. +++++|+..+.+.+||.||+.+..... .....+....++.+++.++|.+..++.+++
T Consensus 82 ~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----- 143 (264)
T PRK13546 82 DRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPVKK----- 143 (264)
T ss_pred EECCE----------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCccc-----
Confidence 99985 457778877778899999998765432 223344445677889999998888777765
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEE
Q 048718 654 ISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVI 733 (1118)
Q Consensus 654 LSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~i 733 (1118)
|||||||||+||+||+.+|+||||||||+|||+.++..+++.|+++++.|.|||+++|+... +.+.+|++++|.+ |++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~-i~~~~d~i~~l~~-G~i 221 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQ-VRQFCTKIAWIEG-GKL 221 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH-HHHHcCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999987779999999999875 4578999999975 689
Q ss_pred EEecChhhHHH
Q 048718 734 VYHGPVKKVEE 744 (1118)
Q Consensus 734 v~~G~~~~l~~ 744 (1118)
++.|+.+++.+
T Consensus 222 ~~~g~~~~~~~ 232 (264)
T PRK13546 222 KDYGELDDVLP 232 (264)
T ss_pred EEeCCHHHHHH
Confidence 99999877643
No 280
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.3e-38 Score=322.90 Aligned_cols=219 Identities=26% Similarity=0.444 Sum_probs=197.2
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcCeE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKRII 589 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~I 589 (1118)
++++||+++| +++.||+++|++|++|.+++|+|||||||||||.+++.+++ .++|+|+++|.++. .+.+.+++
T Consensus 2 I~i~nv~K~y--~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~~~s~~LAk~l 77 (252)
T COG4604 2 ITIENVSKSY--GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTSTPSKELAKKL 77 (252)
T ss_pred eeehhhhHhh--CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecccCChHHHHHHH
Confidence 6788999999 46889999999999999999999999999999999999998 68999999998864 34577788
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 048718 590 GFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMV 669 (1118)
Q Consensus 590 gyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl 669 (1118)
+.+-|+..+-..+||+|-+.|+..- ..+++...+.+..+++.++.|+|++..|++..+ ||||||||.-||+.|+
T Consensus 78 SILkQ~N~i~~rlTV~dLv~FGRfP-YSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~-----LSGGQrQRAfIAMVla 151 (252)
T COG4604 78 SILKQENHINSRLTVRDLVGFGRFP-YSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDE-----LSGGQRQRAFIAMVLA 151 (252)
T ss_pred HHHHhhchhhheeEHHHHhhcCCCc-ccCCCCchHHHHHHHHHHHHhcccchHHHhHHh-----cccchhhhhhhheeee
Confidence 9999998888899999999998543 345556666677899999999999999999876 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 670 MEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 670 ~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
.+.+.++||||.++||...+..+++.||+++++ |+||+++.||.+++- .+.|.++-|.+ |+++..|+++++.
T Consensus 152 QdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS-~YsD~IVAlK~-G~vv~~G~~~eii 224 (252)
T COG4604 152 QDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFAS-CYSDHIVALKN-GKVVKQGSPDEII 224 (252)
T ss_pred ccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHH-hhhhheeeecC-CEEEecCCHHHhc
Confidence 999999999999999999999999999999976 999999999999864 78999999965 7999999999873
No 281
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=9.5e-37 Score=316.58 Aligned_cols=176 Identities=24% Similarity=0.474 Sum_probs=154.2
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh--hhhcCeEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI--QSYKRIIG 590 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~Ig 590 (1118)
++++|++++|.+..+.+|+|+||+|++||+++|+|||||||||||++|+|+.+ +.+|+|.++|.++.. ..+++.++
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK--PQQGEITLDGVPVSDLEKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCEEHHHHHHHHHhhEE
Confidence 46889999996433479999999999999999999999999999999999987 689999999987532 24567899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
|++|++.+++ .||+||+ + ..|||||||||+|||||+.
T Consensus 79 ~~~q~~~~~~-~tv~~~i-------------------------------------~-----~~LS~G~~qrv~laral~~ 115 (178)
T cd03247 79 VLNQRPYLFD-TTLRNNL-------------------------------------G-----RRFSGGERQRLALARILLQ 115 (178)
T ss_pred EEccCCeeec-ccHHHhh-------------------------------------c-----ccCCHHHHHHHHHHHHHhc
Confidence 9999998886 6999987 2 2499999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEec
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHG 737 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G 737 (1118)
+|++|+|||||+|||+.++..+++.|+++. ++.|||+++|+++. + ..+|++++|.+ |++++.|
T Consensus 116 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~~~~l~~-g~i~~~~ 178 (178)
T cd03247 116 DAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTG-I-EHMDKILFLEN-GKIIMQG 178 (178)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HhCCEEEEEEC-CEEEecC
Confidence 999999999999999999999999999885 58999999999875 3 46999999976 6887654
No 282
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.4e-37 Score=405.12 Aligned_cols=220 Identities=24% Similarity=0.415 Sum_probs=184.5
Q ss_pred eEEEEEeEEEEEcCC-cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC----------------------
Q 048718 511 IEVAFKDLTITLKGK-NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC---------------------- 567 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~-~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~---------------------- 567 (1118)
..|+|+||+|+|+.+ +++||+|+||+|++|+.+||+||||||||||+++|.|++++.
T Consensus 1164 g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQ 1243 (1466)
T ss_pred ceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccc
Confidence 359999999999743 357999999999999999999999999999999999999841
Q ss_pred ------------------------------CceeEEEECCEecC---hhhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhh
Q 048718 568 ------------------------------IMSGTILVNGKVAS---IQSYKRIIGFVPQDDIVHGNLTVEENLWFSARC 614 (1118)
Q Consensus 568 ------------------------------~~sG~I~inG~~~~---~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~l 614 (1118)
+.+|+|++||.++. ...+|+.||||+|++.+|+ .|++|||.|+..
T Consensus 1244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~- 1321 (1466)
T PTZ00265 1244 GDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKE- 1321 (1466)
T ss_pred cccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCC-
Confidence 25999999999863 4578999999999999995 699999999732
Q ss_pred ccCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048718 615 RLSADLPKAEKVLVVERVIESL-------GLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSS 687 (1118)
Q Consensus 615 r~~~~~~~~~~~~~v~~lL~~l-------gL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~ 687 (1118)
+.+.++ ++++++.. .|.+.+||.||+ ....||||||||++|||||+++|+|||||||||+||+.
T Consensus 1322 ----~at~ee----I~~A~k~A~l~~fI~~LP~GydT~VGe-~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~ 1392 (1466)
T PTZ00265 1322 ----DATRED----VKRACKFAAIDEFIESLPNKYDTNVGP-YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSN 1392 (1466)
T ss_pred ----CCCHHH----HHHHHHHcCCHHHHHhCccccCCccCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence 223333 33333333 346678999996 45569999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HCCCEEEEEEcCCcHHHHhccCcEEEEecC---cE-EEEecChhhHH
Q 048718 688 SSQLLLRALRREA-LEGVNICTVVHQPSYALFRMFDDLILLAKG---GV-IVYHGPVKKVE 743 (1118)
Q Consensus 688 sa~~i~~~Lr~la-~~G~TIIvvtHq~~~~i~~~~D~vivL~~G---G~-iv~~G~~~~l~ 743 (1118)
++..|.+.|+++. .+++|+|+|+|+++. .+.+|+|++|+++ |+ +++.|+-+++.
T Consensus 1393 sE~~I~~~L~~~~~~~~~TvIiIaHRlst--i~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1393 SEKLIEKTIVDIKDKADKTIITIAHRIAS--IKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred HHHHHHHHHHHHhccCCCEEEEEechHHH--HHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 9999999999886 368999999999864 4789999999872 56 45899988874
No 283
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.1e-36 Score=314.86 Aligned_cols=168 Identities=29% Similarity=0.548 Sum_probs=150.8
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcCeE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKRII 589 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~I 589 (1118)
++++|+++.|.+.++.+|+++|++|++||+++|+|||||||||||++|+|+++ +.+|+|.++|.++. ...+++.+
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i 78 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR--PTSGRVRLDGADISQWDPNELGDHV 78 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEEcccCCHHHHHhhe
Confidence 46899999996433569999999999999999999999999999999999998 68999999998763 23456789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 048718 590 GFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMV 669 (1118)
Q Consensus 590 gyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl 669 (1118)
+|++|++.+++. ||+||+ |||||||||+|||||+
T Consensus 79 ~~~~q~~~~~~~-tv~~~l---------------------------------------------LS~G~~qrv~la~al~ 112 (173)
T cd03246 79 GYLPQDDELFSG-SIAENI---------------------------------------------LSGGQRQRLGLARALY 112 (173)
T ss_pred EEECCCCccccC-cHHHHC---------------------------------------------cCHHHHHHHHHHHHHh
Confidence 999999988874 999987 8999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecC
Q 048718 670 MEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKG 730 (1118)
Q Consensus 670 ~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~G 730 (1118)
++|++|||||||+|||+.++..+.+.|++++++|+|||+++|+++. + +.+|++++|.+|
T Consensus 113 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~-~-~~~d~v~~l~~G 171 (173)
T cd03246 113 GNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPET-L-ASADRILVLEDG 171 (173)
T ss_pred cCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEEECC
Confidence 9999999999999999999999999999998779999999999874 4 579999999764
No 284
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.9e-36 Score=321.01 Aligned_cols=198 Identities=21% Similarity=0.351 Sum_probs=163.8
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcCe
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKRI 588 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 588 (1118)
.++++|+++.|+...+.+|+|+|++|++||+++|+|||||||||||++|+|+.+ +.+|+|.++|.++. ...+++.
T Consensus 6 ~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 6 EIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE--AEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred eEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEhHHCCHHHHHhh
Confidence 488999999995433579999999999999999999999999999999999987 68999999998753 2345678
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 048718 589 IGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEM 668 (1118)
Q Consensus 589 IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArAL 668 (1118)
|+|++|++.+++ .||+||+.+.. ..... .+.+.++ .+..+ +.|||||+|||+|||+|
T Consensus 84 i~~v~q~~~~~~-~tv~~~l~~~~------~~~~~----~~~~~l~-------~~~~~-----~~LS~G~~qrv~laral 140 (207)
T cd03369 84 LTIIPQDPTLFS-GTIRSNLDPFD------EYSDE----EIYGALR-------VSEGG-----LNLSQGQRQLLCLARAL 140 (207)
T ss_pred EEEEecCCcccC-ccHHHHhcccC------CCCHH----HHHHHhh-------ccCCC-----CcCCHHHHHHHHHHHHH
Confidence 999999998886 59999997531 11111 1233333 23333 45999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecC
Q 048718 669 VMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGP 738 (1118)
Q Consensus 669 l~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~ 738 (1118)
+.+|++|||||||+|||+.++..+.+.|+++. +|.|+|++||+++.. . .+|++++|.+ |+++..|+
T Consensus 141 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~~-~-~~d~v~~l~~-g~i~~~g~ 206 (207)
T cd03369 141 LKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTI-I-DYDKILVMDA-GEVKEYDH 206 (207)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHH-h-hCCEEEEEEC-CEEEecCC
Confidence 99999999999999999999999999999875 589999999998864 3 4899999976 68888775
No 285
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=5.6e-37 Score=350.56 Aligned_cols=232 Identities=28% Similarity=0.435 Sum_probs=197.6
Q ss_pred cCCceEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hh
Q 048718 507 KRPTIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQ 583 (1118)
Q Consensus 507 ~~~~~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~ 583 (1118)
++|...+.+++|++.-++.++++|+++||.+.+||.++||||||||||||.|+|.|..+ |.+|.|.+||-+++ .+
T Consensus 329 P~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~--p~~G~VRLDga~l~qWd~e 406 (580)
T COG4618 329 PAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PTSGSVRLDGADLRQWDRE 406 (580)
T ss_pred CCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccc--cCCCcEEecchhhhcCCHH
Confidence 34567899999999777777899999999999999999999999999999999999998 68999999997653 35
Q ss_pred hhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 048718 584 SYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVN 663 (1118)
Q Consensus 584 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVs 663 (1118)
.+-+.|||+|||-.||+. ||.|||.-....-.++.+.+..+.+.+++++- .|.+-+||.+|+ ....||||||||++
T Consensus 407 ~lG~hiGYLPQdVeLF~G-TIaeNIaRf~~~~d~~kIieAA~lAgvHelIl--~lP~GYdT~iG~-~G~~LSgGQRQRIa 482 (580)
T COG4618 407 QLGRHIGYLPQDVELFDG-TIAENIARFGEEADPEKVIEAARLAGVHELIL--RLPQGYDTRIGE-GGATLSGGQRQRIA 482 (580)
T ss_pred HhccccCcCcccceecCC-cHHHHHHhccccCCHHHHHHHHHHcChHHHHH--hCcCCccCccCC-CCCCCCchHHHHHH
Confidence 677899999999999987 99999963321111111222334455777764 568889999997 56789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 664 VGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 664 IArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
+||||-.+|.+++||||-++||......+.+.|..++++|.|+|+++|.|+ +...+|++++|.+ |++-.+|+.+|+.
T Consensus 483 LARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~-G~~~~FG~r~eVL 559 (580)
T COG4618 483 LARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQD-GRIAAFGPREEVL 559 (580)
T ss_pred HHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeeecC-ChHHhcCCHHHHH
Confidence 999999999999999999999999999999999999999999999999997 4478999999975 7999999999987
Q ss_pred HHHH
Q 048718 744 EYFA 747 (1118)
Q Consensus 744 ~yf~ 747 (1118)
..+.
T Consensus 560 a~~~ 563 (580)
T COG4618 560 AKVL 563 (580)
T ss_pred HHhc
Confidence 6553
No 286
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=7.9e-37 Score=370.01 Aligned_cols=215 Identities=23% Similarity=0.417 Sum_probs=181.4
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcCe
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKRI 588 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 588 (1118)
.++++|++++|+.+++.+|+|+|+++++||.++|+||||||||||+++|+|+++ |.+|+|.+||+++. ...+++.
T Consensus 313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~--p~~G~i~~~g~~~~~~~~~~~~~~ 390 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD--VSEGDIRFHDIPLTKLQLDSWRSR 390 (569)
T ss_pred cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCEEHhhCCHHHHHhh
Confidence 589999999997545679999999999999999999999999999999999998 68999999998763 3467889
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCCCCCHHHHHH
Q 048718 589 IGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGL-------QHIRDSLVGTVEKRGISGGQRKR 661 (1118)
Q Consensus 589 IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL-------~~~~dt~vg~~~~rgLSGGERQR 661 (1118)
|+||+|++.+|+. |++|||.++.. ..++++ ++++++..++ .+..++.+|+ ....||||||||
T Consensus 391 i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~~~~----~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSgGq~qR 459 (569)
T PRK10789 391 LAVVSQTPFLFSD-TVANNIALGRP-----DATQQE----IEHVARLASVHDDILRLPQGYDTEVGE-RGVMLSGGQKQR 459 (569)
T ss_pred eEEEccCCeeccc-cHHHHHhcCCC-----CCCHHH----HHHHHHHcCCHHHHHhCcCcccceecC-CCCcCCHHHHHH
Confidence 9999999999975 99999987531 122222 3344444443 3455777775 456799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhh
Q 048718 662 VNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKK 741 (1118)
Q Consensus 662 VsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~ 741 (1118)
++|||||+++|+||||||||++||+.++..+.+.|+++. +|+|+|+++|+++. .+.+|++++|++ |++++.|+.++
T Consensus 460 i~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~--~~~~d~i~~l~~-G~i~~~g~~~~ 535 (569)
T PRK10789 460 ISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSA--LTEASEILVMQH-GHIAQRGNHDQ 535 (569)
T ss_pred HHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhH--HHcCCEEEEEeC-CEEEEecCHHH
Confidence 999999999999999999999999999999999998875 68999999999864 367999999976 68999999877
Q ss_pred HH
Q 048718 742 VE 743 (1118)
Q Consensus 742 l~ 743 (1118)
+.
T Consensus 536 l~ 537 (569)
T PRK10789 536 LA 537 (569)
T ss_pred HH
Confidence 64
No 287
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2e-36 Score=315.47 Aligned_cols=170 Identities=28% Similarity=0.462 Sum_probs=152.5
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh----hhhcC
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI----QSYKR 587 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r~ 587 (1118)
.++++|+++.| +|+++|++|++||+++|+|||||||||||++|+|+++ +++|+|.++|.++.. ..+++
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~ 75 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPVTRRSPRDAIRA 75 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccCHHHHHhC
Confidence 47899999877 8999999999999999999999999999999999998 689999999987642 23467
Q ss_pred eEEEEcCCC---CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 048718 588 IIGFVPQDD---IVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNV 664 (1118)
Q Consensus 588 ~IgyV~Qd~---~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsI 664 (1118)
.++|++|++ .+++.+||+||+.+... |||||||||+|
T Consensus 76 ~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------LS~G~~qrl~l 115 (182)
T cd03215 76 GIAYVPEDRKREGLVLDLSVAENIALSSL----------------------------------------LSGGNQQKVVL 115 (182)
T ss_pred CeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------cCHHHHHHHHH
Confidence 899999984 57888999999987421 99999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecC
Q 048718 665 GLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKG 730 (1118)
Q Consensus 665 ArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~G 730 (1118)
|+||+.+|++|||||||+|||+.++..+.+.|+++.++|.|+|+++|+++. +.+++|++++|.+|
T Consensus 116 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-~~~~~d~v~~l~~G 180 (182)
T cd03215 116 ARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDE-LLGLCDRILVMYEG 180 (182)
T ss_pred HHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEecCC
Confidence 999999999999999999999999999999999987778999999999864 56789999999764
No 288
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1e-36 Score=368.82 Aligned_cols=215 Identities=27% Similarity=0.434 Sum_probs=180.8
Q ss_pred eEEEEEeEEEEEcCCc-ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhc
Q 048718 511 IEVAFKDLTITLKGKN-KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYK 586 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~-k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r 586 (1118)
..++++||++.|+.+. +.+|+|+|+++++||.++|+|+||||||||+|+|+|+++ |.+|+|.+||.+++ ...++
T Consensus 336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~--p~~G~I~i~g~~i~~~~~~~~~ 413 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD--PQSGRILLDGVDLRQLDPAELR 413 (576)
T ss_pred ceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCEEEECCEEHHhcCHHHHH
Confidence 3589999999996432 679999999999999999999999999999999999998 68999999998764 34678
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCCCHHHH
Q 048718 587 RIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-------HIRDSLVGTVEKRGISGGQR 659 (1118)
Q Consensus 587 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-------~~~dt~vg~~~~rgLSGGER 659 (1118)
+.++|+||++.+|+. |++|||.++.. ..+++ .+.++++.+|+. +..++.+++ ....||||||
T Consensus 414 ~~i~~~~Q~~~lf~~-Ti~~Ni~~~~~-----~~~~~----~~~~~l~~~~l~~~i~~l~~gl~t~i~~-~g~~LSgGq~ 482 (576)
T TIGR02204 414 ARMALVPQDPVLFAA-SVMENIRYGRP-----DATDE----EVEAAARAAHAHEFISALPEGYDTYLGE-RGVTLSGGQR 482 (576)
T ss_pred HhceEEccCCccccc-cHHHHHhcCCC-----CCCHH----HHHHHHHHcCcHHHHHhCCCCCCceeCC-CCCcCCHHHH
Confidence 899999999999865 99999987531 12222 355556666553 234666665 4566999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecCh
Q 048718 660 KRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPV 739 (1118)
Q Consensus 660 QRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~ 739 (1118)
||++||||++++|++|+|||||++||+.++..+++.|+++. .++|+|++||+++. .+.+|++++|.+ |++++.|+.
T Consensus 483 Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~~--~~~~d~vi~l~~-g~~~~~g~~ 558 (576)
T TIGR02204 483 QRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLAT--VLKADRIVVMDQ-GRIVAQGTH 558 (576)
T ss_pred HHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchHH--HHhCCEEEEEEC-CEEEeeecH
Confidence 99999999999999999999999999999999999999875 58999999999864 478999999976 689999998
Q ss_pred hhH
Q 048718 740 KKV 742 (1118)
Q Consensus 740 ~~l 742 (1118)
+++
T Consensus 559 ~~l 561 (576)
T TIGR02204 559 AEL 561 (576)
T ss_pred HHH
Confidence 775
No 289
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=3e-36 Score=359.72 Aligned_cols=215 Identities=23% Similarity=0.380 Sum_probs=181.5
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh----hhhcC
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI----QSYKR 587 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r~ 587 (1118)
.++++||++ .+|+|+||+|.+||+++|+||||||||||||+|+|+.+ |++|+|.++|+++.. ...++
T Consensus 257 ~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~--p~~G~I~~~g~~i~~~~~~~~~~~ 327 (501)
T PRK10762 257 RLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP--RTSGYVTLDGHEVVTRSPQDGLAN 327 (501)
T ss_pred EEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHHHHC
Confidence 578888873 37999999999999999999999999999999999997 689999999987632 12456
Q ss_pred eEEEEcCCC---CCCCCCCHHHHHHHHHhhccC---CCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHH
Q 048718 588 IIGFVPQDD---IVHGNLTVEENLWFSARCRLS---ADLPKAEKVLVVERVIESLGLQ-HIRDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 588 ~IgyV~Qd~---~l~~~LTV~EnL~f~a~lr~~---~~~~~~~~~~~v~~lL~~lgL~-~~~dt~vg~~~~rgLSGGERQ 660 (1118)
.||||+|++ .+++.+||.||+.+....... ......+.++.++++++.+||. +..++++++ |||||||
T Consensus 328 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGekq 402 (501)
T PRK10762 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGL-----LSGGNQQ 402 (501)
T ss_pred CCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhh-----CCHHHHH
Confidence 799999996 578889999999875321110 0012233345688999999995 677888876 9999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
||+||+||+.+|+||||||||+|||+.++..+.+.|++++++|.|||++||+++. +.+++|++++|.+ |++++.|+++
T Consensus 403 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~-~~~~~d~v~~l~~-G~i~~~~~~~ 480 (501)
T PRK10762 403 KVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPE-VLGMSDRILVMHE-GRISGEFTRE 480 (501)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHH-HHhhCCEEEEEEC-CEEEEEeccc
Confidence 9999999999999999999999999999999999999998789999999999875 4689999999976 6899999877
Q ss_pred hH
Q 048718 741 KV 742 (1118)
Q Consensus 741 ~l 742 (1118)
++
T Consensus 481 ~~ 482 (501)
T PRK10762 481 QA 482 (501)
T ss_pred cC
Confidence 65
No 290
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.4e-37 Score=329.64 Aligned_cols=194 Identities=31% Similarity=0.514 Sum_probs=173.0
Q ss_pred eeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC-------hhhhcCeEEEEcCCCCCCCCCCH
Q 048718 532 SVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS-------IQSYKRIIGFVPQDDIVHGNLTV 604 (1118)
Q Consensus 532 nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~-------~~~~r~~IgyV~Qd~~l~~~LTV 604 (1118)
++++.++.-.++||.|+||||||||+|+|+|+.+ |++|.|.+||..+. ....+++|||||||..+||++||
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r--PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTR--PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCC--ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 5677776647999999999999999999999998 79999999997531 13457899999999999999999
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 048718 605 EENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGL 684 (1118)
Q Consensus 605 ~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGL 684 (1118)
+.||.|+.... .....+++++.||+.|..++++.+ |||||||||+|+|||++.|++|+||||.++|
T Consensus 94 rgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~P~~-----LSGGEkQRVAIGRALLt~P~LLLmDEPLaSL 159 (352)
T COG4148 94 RGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRYPGT-----LSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred ecchhhhhccc---------chHhHHHHHHHhCcHHHHhhCCCc-----cCcchhhHHHHHHHHhcCCCeeeecCchhhc
Confidence 99999986421 223478899999999999999887 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 685 DSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 685 D~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
|-..+.+++-.|.++.++ +..|+.+||.+.+ +.+++|++++|.+ |++...|+.+++.
T Consensus 160 D~~RK~EilpylERL~~e~~IPIlYVSHS~~E-v~RLAd~vV~le~-GkV~A~g~~e~v~ 217 (352)
T COG4148 160 DLPRKREILPYLERLRDEINIPILYVSHSLDE-VLRLADRVVVLEN-GKVKASGPLEEVW 217 (352)
T ss_pred ccchhhHHHHHHHHHHHhcCCCEEEEecCHHH-HHhhhheEEEecC-CeEEecCcHHHHh
Confidence 999999999999999976 8999999999975 5799999999976 6999999998874
No 291
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=9.5e-37 Score=365.87 Aligned_cols=188 Identities=29% Similarity=0.507 Sum_probs=160.2
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC--hhhhcCe
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS--IQSYKRI 588 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~--~~~~r~~ 588 (1118)
..++++||+|+|+. ++++|+|+|++|++||.+||+||||||||||+|+|+|+++ |++|+|.+||.++. ...+|+.
T Consensus 333 ~~I~~~~vsf~Y~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~--p~~G~I~i~g~~i~~~~~~lr~~ 409 (529)
T TIGR02868 333 PTLELRDLSFGYPG-SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD--PLQGEVTLDGVSVSSLQDELRRR 409 (529)
T ss_pred ceEEEEEEEEecCC-CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhHHHHHHhh
Confidence 35999999999964 3469999999999999999999999999999999999998 68999999998754 4567889
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCCCCCHHHHHH
Q 048718 589 IGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGL-------QHIRDSLVGTVEKRGISGGQRKR 661 (1118)
Q Consensus 589 IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL-------~~~~dt~vg~~~~rgLSGGERQR 661 (1118)
|+||||++.+|+. ||+|||.++.. +.+++ .+.++++..++ .+..||.+|+ ....||||||||
T Consensus 410 i~~V~Q~~~lF~~-TI~eNI~~g~~-----~~~~e----~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQrQR 478 (529)
T TIGR02868 410 ISVFAQDAHLFDT-TVRDNLRLGRP-----DATDE----ELWAALERVGLADWLRSLPDGLDTVLGE-GGARLSGGERQR 478 (529)
T ss_pred eEEEccCcccccc-cHHHHHhccCC-----CCCHH----HHHHHHHHcCCHHHHHhCcccccchhcc-ccCcCCHHHHHH
Confidence 9999999999965 99999998631 22222 24555555554 4456888886 445699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCC
Q 048718 662 VNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQP 713 (1118)
Q Consensus 662 VsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~ 713 (1118)
++|||||+++|+||+||||||+||+.++..+.+.|+++ .+++|+|+++|++
T Consensus 479 iaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~-~~~~TvIiItHrl 529 (529)
T TIGR02868 479 LALARALLADAPILLLDEPTEHLDAGTESELLEDLLAA-LSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEecCC
Confidence 99999999999999999999999999999999999875 3579999999984
No 292
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-36 Score=360.02 Aligned_cols=216 Identities=21% Similarity=0.350 Sum_probs=181.7
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh----hhhcC
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI----QSYKR 587 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r~ 587 (1118)
.++++|+++ +.+|+|+||+|++||+++|+||||||||||||+|+|+.+ +++|+|.++|+++.. ...++
T Consensus 257 ~l~~~~~~~------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~ 328 (501)
T PRK11288 257 RLRLDGLKG------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRA 328 (501)
T ss_pred EEEEecccc------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhC
Confidence 578888873 249999999999999999999999999999999999997 689999999987532 22456
Q ss_pred eEEEEcCCC---CCCCCCCHHHHHHHHHhhcc-CCC--CCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHH
Q 048718 588 IIGFVPQDD---IVHGNLTVEENLWFSARCRL-SAD--LPKAEKVLVVERVIESLGLQ-HIRDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 588 ~IgyV~Qd~---~l~~~LTV~EnL~f~a~lr~-~~~--~~~~~~~~~v~~lL~~lgL~-~~~dt~vg~~~~rgLSGGERQ 660 (1118)
.++|++|++ .+++.+||.||+.++..... ... ......++.++++++.+||. +..++.+++ |||||||
T Consensus 329 ~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGq~q 403 (501)
T PRK11288 329 GIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMN-----LSGGNQQ 403 (501)
T ss_pred CCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcccc-----CCHHHHH
Confidence 799999996 48889999999987542111 001 11222335678999999994 678888877 9999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
||+||++|+.+|+||||||||+|||+.++.++++.|++++++|.|||++|||++. +.+++|++++|.+ |++++.|+++
T Consensus 404 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~-~~~~~d~i~~l~~-g~i~~~~~~~ 481 (501)
T PRK11288 404 KAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPE-VLGVADRIVVMRE-GRIAGELARE 481 (501)
T ss_pred HHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHH-HHhhCCEEEEEEC-CEEEEEEccc
Confidence 9999999999999999999999999999999999999998889999999999976 5689999999976 6899998876
Q ss_pred hH
Q 048718 741 KV 742 (1118)
Q Consensus 741 ~l 742 (1118)
++
T Consensus 482 ~~ 483 (501)
T PRK11288 482 QA 483 (501)
T ss_pred cC
Confidence 53
No 293
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-36 Score=378.01 Aligned_cols=220 Identities=25% Similarity=0.450 Sum_probs=189.5
Q ss_pred ceEEEEEeEEEEEcC-CcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEec---Chhhh
Q 048718 510 TIEVAFKDLTITLKG-KNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVA---SIQSY 585 (1118)
Q Consensus 510 ~~~l~~knLs~~~~~-~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~---~~~~~ 585 (1118)
...|+++||+|.|+. .+.+||+|+|++|++|+.+||+|||||||||.+.+|-.+++ |++|.|.+||.++ +.+.+
T Consensus 985 ~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd--p~~G~V~IDg~dik~lnl~~L 1062 (1228)
T KOG0055|consen 985 KGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD--PDAGKVKIDGVDIKDLNLKWL 1062 (1228)
T ss_pred eeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCcccccCCHHHH
Confidence 457999999999984 34679999999999999999999999999999999999998 7899999999876 44678
Q ss_pred cCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHH-----HHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 048718 586 KRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEK-----VLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 586 r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~-----~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQ 660 (1118)
|+++|.|.|+|.||. -|++|||.|+.. ..+.++. .+.+++.+. +|.+.+||.||+ ....|||||||
T Consensus 1063 R~~i~lVsQEP~LF~-~TIrENI~YG~~-----~vs~~eIi~Aak~ANaH~FI~--sLP~GyDT~vGe-rG~QLSGGQKQ 1133 (1228)
T KOG0055|consen 1063 RKQIGLVSQEPVLFN-GTIRENIAYGSE-----EVSEEEIIEAAKLANAHNFIS--SLPQGYDTRVGE-RGVQLSGGQKQ 1133 (1228)
T ss_pred HHhcceeccCchhhc-ccHHHHHhccCC-----CCCHHHHHHHHHHhhhHHHHh--cCcCcccCccCc-ccCcCCchHHH
Confidence 999999999999996 499999999921 1344332 233344443 678999999997 44569999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
|++|||||++||+||||||.||+||+++.+.+.++|.+. ..|+|.|+|.|+++. .+.+|.|+|+.+ |++++.|+-+
T Consensus 1134 RIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a-~~gRT~IvIAHRLST--IqnaD~I~Vi~~-G~VvE~GtH~ 1209 (1228)
T KOG0055|consen 1134 RIAIARAILRNPKILLLDEATSALDSESERVVQEALDRA-MEGRTTIVIAHRLST--IQNADVIAVLKN-GKVVEQGTHD 1209 (1228)
T ss_pred HHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHh-hcCCcEEEEecchhh--hhcCCEEEEEEC-CEEEecccHH
Confidence 999999999999999999999999999999999999875 468999999999874 489999999976 6999999988
Q ss_pred hHHH
Q 048718 741 KVEE 744 (1118)
Q Consensus 741 ~l~~ 744 (1118)
++..
T Consensus 1210 ~L~~ 1213 (1228)
T KOG0055|consen 1210 ELLA 1213 (1228)
T ss_pred HHHh
Confidence 8753
No 294
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=3.7e-36 Score=365.24 Aligned_cols=215 Identities=25% Similarity=0.381 Sum_probs=177.8
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcC
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKR 587 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 587 (1118)
..++++||+++|++ ++++|+|+|++|++||.++|+||||||||||+++|+|+++ |.+|+|.+||.++. ...+++
T Consensus 333 ~~i~~~~v~~~y~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~~~~~~~~~~~~ 409 (585)
T TIGR01192 333 GAVEFRHITFEFAN-SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD--PTVGQILIDGIDINTVTRESLRK 409 (585)
T ss_pred CeEEEEEEEEECCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC--CCCCEEEECCEEhhhCCHHHHHh
Confidence 35999999999963 3569999999999999999999999999999999999998 68999999998764 345788
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCCCCCHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLG-------LQHIRDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lg-------L~~~~dt~vg~~~~rgLSGGERQ 660 (1118)
.++||+|++.+|+ .|++|||.++.. ..++++ +.+.++..+ +.+..++.+|+ ....|||||||
T Consensus 410 ~i~~v~q~~~lf~-~ti~~Ni~~~~~-----~~~~~~----~~~a~~~~~~~~~i~~l~~g~~t~~~~-~~~~LSgGq~q 478 (585)
T TIGR01192 410 SIATVFQDAGLFN-RSIRENIRLGRE-----GATDEE----VYEAAKAAAAHDFILKRSNGYDTLVGE-RGNRLSGGERQ 478 (585)
T ss_pred heEEEccCCccCc-ccHHHHHhcCCC-----CCCHHH----HHHHHHHhCcHHHHHhccccccchhcC-CCCCCCHHHHH
Confidence 9999999999886 599999988631 122322 222233322 23344666665 45679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
|++|||||+.+|++|||||||++||+.++..+.+.|+++. +++|+|+++|+++. + +.+|++++|++ |++++.|+.+
T Consensus 479 rl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~-~-~~~d~i~~l~~-G~i~~~g~~~ 554 (585)
T TIGR01192 479 RLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLST-V-RNADLVLFLDQ-GRLIEKGSFQ 554 (585)
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHH-H-HcCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999999999999998774 58999999999864 3 67999999976 6899999987
Q ss_pred hHH
Q 048718 741 KVE 743 (1118)
Q Consensus 741 ~l~ 743 (1118)
++.
T Consensus 555 ~l~ 557 (585)
T TIGR01192 555 ELI 557 (585)
T ss_pred HHH
Confidence 764
No 295
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=2.9e-36 Score=313.69 Aligned_cols=176 Identities=37% Similarity=0.613 Sum_probs=152.2
Q ss_pred EEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcCeEE
Q 048718 514 AFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKRIIG 590 (1118)
Q Consensus 514 ~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~Ig 590 (1118)
+++||++.|. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++ +++|+|.++|.++.. ..+++.++
T Consensus 1 ~~~~l~~~~~--~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~~~~~~i~ 76 (180)
T cd03214 1 EVENLSVGYG--GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK--PSSGEILLDGKDLASLSPKELARKIA 76 (180)
T ss_pred CeeEEEEEEC--CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCcCCHHHHHHHHh
Confidence 3688999995 3579999999999999999999999999999999999997 689999999987632 23455688
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
|++| +++.+||.+..++.+.+ |||||||||+|||+|+.
T Consensus 77 ~~~q-------------------------------------~l~~~gl~~~~~~~~~~-----LS~G~~qrl~laral~~ 114 (180)
T cd03214 77 YVPQ-------------------------------------ALELLGLAHLADRPFNE-----LSGGERQRVLLARALAQ 114 (180)
T ss_pred HHHH-------------------------------------HHHHcCCHhHhcCCccc-----CCHHHHHHHHHHHHHhc
Confidence 8888 56667777666666554 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEec
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHG 737 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G 737 (1118)
+|+++||||||+|||+.++..+.+.|++++++ |.|+|+++|+++. +.+++|++++|.+ |++++.|
T Consensus 115 ~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~-~~~~~d~~~~l~~-g~i~~~~ 180 (180)
T cd03214 115 EPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL-AARYADRVILLKD-GRIVAQG 180 (180)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999998766 8999999999875 4578999999976 6777653
No 296
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=5.7e-36 Score=321.76 Aligned_cols=196 Identities=31% Similarity=0.484 Sum_probs=164.3
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCC--CCCHHHHHHHHH
Q 048718 535 GKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHG--NLTVEENLWFSA 612 (1118)
Q Consensus 535 l~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~--~LTV~EnL~f~a 612 (1118)
|+|++||+++|+|+||||||||+++|+|+++ +++|+|.++|++.. ..++.++|++|++.+++ .+||.||+.++.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP--PAKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 4678999999999999999999999999987 68999999998653 34667999999987643 479999998763
Q ss_pred hhccC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048718 613 RCRLS-ADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQL 691 (1118)
Q Consensus 613 ~lr~~-~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~ 691 (1118)
..... ...........+.++++.+||.+..++.+++ |||||||||+|||+|+.+|++|||||||+|||+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGE-----LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 21100 0011122334688899999999888877765 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 692 LLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 692 i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
+.+.|++++++|+|+|++||+++. +.+.+|+++++ + |++++.|+.+++
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~~-~~~~~d~i~~l-~-G~i~~~~~~~~~ 199 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLAQ-AMATCDRVVLL-N-GRVIADGTPQQL 199 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEE-C-CEEEeecCHHHh
Confidence 999999988779999999999875 56889999998 6 689999998765
No 297
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-35 Score=347.40 Aligned_cols=211 Identities=21% Similarity=0.297 Sum_probs=178.6
Q ss_pred EEEEEeEEEEEcCCc-ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEE
Q 048718 512 EVAFKDLTITLKGKN-KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIG 590 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~-k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 590 (1118)
.+.++||++.+.++. +.+|+|+||+|++||+++|+|||||||||||++|+|+++ |++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~--P~sGeI~I~G~~~---------- 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM--PNKGTVDIKGSAA---------- 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCceEEEECCEee----------
Confidence 488999999986432 469999999999999999999999999999999999998 6899999999641
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
++.+...+++.+||+||+.+..... .....+..+.++++++.+||.+..++.+++ |||||||||+|||||+.
T Consensus 89 ~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~~~-----LSGGQrQRVaLArAL~~ 160 (549)
T PRK13545 89 LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPVKT-----YSSGMKSRLGFAISVHI 160 (549)
T ss_pred eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCccc-----CCHHHHHHHHHHHHHHh
Confidence 1222345667789999998864322 223344445678899999998888887765 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHHH
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVEE 744 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~~ 744 (1118)
+|++|||||||+|||+.++..+++.|++++++|.|||+++|+++. +.+++|++++|.+ |++++.|+++++..
T Consensus 161 ~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~-i~~l~DrIivL~~-GkIv~~G~~~el~~ 232 (549)
T PRK13545 161 NPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQ-VKSFCTKALWLHY-GQVKEYGDIKEVVD 232 (549)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHH-HHHhCCEEEEEEC-CEEEEECCHHHHHh
Confidence 999999999999999999999999999988779999999999875 5678999999976 68999999987654
No 298
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.4e-36 Score=364.33 Aligned_cols=200 Identities=34% Similarity=0.557 Sum_probs=170.3
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcCe
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKRI 588 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 588 (1118)
.++++||+|+|+++++++|+|+|++|++||.++|+||||||||||+|+|+|+++ |.+|+|.+||.++. ...+|+.
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~I~~~g~~i~~~~~~~lr~~ 397 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD--PTEGSIAVNGVPLADADADSWRDQ 397 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEehhhCCHHHHHhh
Confidence 699999999997544679999999999999999999999999999999999998 68999999998764 3567889
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCCCHHHHHH
Q 048718 589 IGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-------HIRDSLVGTVEKRGISGGQRKR 661 (1118)
Q Consensus 589 IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-------~~~dt~vg~~~~rgLSGGERQR 661 (1118)
++||+|++.+|+ .|++|||.++.. ..+++ .+.++++..++. +..||.+|+ ....||||||||
T Consensus 398 i~~v~Q~~~lf~-~ti~~Ni~~~~~-----~~~~~----~i~~a~~~~~l~~~i~~lp~Gldt~v~e-~g~~LSgGq~qr 466 (529)
T TIGR02857 398 IAWVPQHPFLFA-GTIAENIRLARP-----DASDA----EIRRALERAGLDEFVAALPQGLDTLIGE-GGAGLSGGQAQR 466 (529)
T ss_pred eEEEcCCCcccC-cCHHHHHhccCC-----CCCHH----HHHHHHHHcCcHHHHHhCcccccchhcc-ccccCCHHHHHH
Confidence 999999999996 599999988632 12222 345556665554 345777776 455699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEE
Q 048718 662 VNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILL 727 (1118)
Q Consensus 662 VsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL 727 (1118)
++|||||+++|++|+|||||++||+.++..+.+.|+++. .++|+|+++|+++. .+.+|++++|
T Consensus 467 i~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~i~~l 529 (529)
T TIGR02857 467 LALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLAL--AERADRIVVL 529 (529)
T ss_pred HHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH--HHhCCEEEeC
Confidence 999999999999999999999999999999999998875 58999999999864 4789999875
No 299
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.3e-35 Score=312.25 Aligned_cols=191 Identities=20% Similarity=0.266 Sum_probs=161.4
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFV 592 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV 592 (1118)
++++|++++|. ++.+++ +||+|++||+++|+|+||||||||+++|+|+.+ +++|+|.++|.++.... ++.++|+
T Consensus 2 l~~~~l~~~~~--~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~-~~~~~~~ 75 (195)
T PRK13541 2 LSLHQLQFNIE--QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ--PSSGNIYYKNCNINNIA-KPYCTYI 75 (195)
T ss_pred eEEEEeeEEEC--CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCcccChhh-hhhEEec
Confidence 67899999994 344554 999999999999999999999999999999988 68999999998764322 3568999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCC
Q 048718 593 PQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEP 672 (1118)
Q Consensus 593 ~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P 672 (1118)
+|++.+++.+||+||+.+..... . ..+.++++++.++|.+..++.+++ |||||||||+||+||+.+|
T Consensus 76 ~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~~rl~la~al~~~p 142 (195)
T PRK13541 76 GHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEKCYS-----LSSGMQKIVAIARLIACQS 142 (195)
T ss_pred cCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccChhh-----CCHHHHHHHHHHHHHhcCC
Confidence 99988888899999998865322 1 123567889999998877777665 9999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcE
Q 048718 673 SLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDL 724 (1118)
Q Consensus 673 ~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~v 724 (1118)
++|+|||||+|||+.++..+.+.|+...+.|.|+|+++|+++.. +.+|-+
T Consensus 143 ~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i--~~~~~~ 192 (195)
T PRK13541 143 DLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSI--KSAQIL 192 (195)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcccc--chhhee
Confidence 99999999999999999999999987766799999999998743 445543
No 300
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.4e-36 Score=317.60 Aligned_cols=192 Identities=25% Similarity=0.451 Sum_probs=152.5
Q ss_pred EEEEeEEEEEcCCc---ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeE
Q 048718 513 VAFKDLTITLKGKN---KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRII 589 (1118)
Q Consensus 513 l~~knLs~~~~~~~---k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~I 589 (1118)
++++||++.|..+. +.+|+|+|++|++||+++|+|||||||||||++|+|+.+ +++|+|.++| .|
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~--~~~G~i~~~g----------~i 68 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE--KLSGSVSVPG----------SI 68 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCCeEEEcC----------EE
Confidence 46899999996432 369999999999999999999999999999999999998 6899999998 59
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCccCCCCCHHHHHHH
Q 048718 590 GFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIR-------DSLVGTVEKRGISGGQRKRV 662 (1118)
Q Consensus 590 gyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~-------dt~vg~~~~rgLSGGERQRV 662 (1118)
+|++|++.++ .+||+||+.+.... ... ...+.++.+++.+.. ++... ...+.|||||||||
T Consensus 69 ~~~~q~~~l~-~~t~~enl~~~~~~------~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~lS~G~~qrv 136 (204)
T cd03250 69 AYVSQEPWIQ-NGTIRENILFGKPF------DEE----RYEKVIKACALEPDLEILPDGDLTEIG-EKGINLSGGQKQRI 136 (204)
T ss_pred EEEecCchhc-cCcHHHHhccCCCc------CHH----HHHHHHHHcCcHHHHHhccCcccceec-CCCCcCCHHHHHHH
Confidence 9999999888 56999999885321 111 122233333332211 11121 12456999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecC
Q 048718 663 NVGLEMVMEPSLLILDEPTSGLDSSSSQLLLR-ALRREALEGVNICTVVHQPSYALFRMFDDLILLAKG 730 (1118)
Q Consensus 663 sIArALl~~P~lLlLDEPTsGLD~~sa~~i~~-~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~G 730 (1118)
+|||+|+.+|++++|||||+|||+.++..+.+ +++.+.++|.|||+++|+++.. .. +|++++|.+|
T Consensus 137 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~-~~-~d~i~~l~~G 203 (204)
T cd03250 137 SLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLL-PH-ADQIVVLDNG 203 (204)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHH-hh-CCEEEEEeCC
Confidence 99999999999999999999999999999998 4666656689999999998754 34 9999999764
No 301
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=9e-36 Score=341.46 Aligned_cols=216 Identities=27% Similarity=0.360 Sum_probs=193.7
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh----hhhcC
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI----QSYKR 587 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r~ 587 (1118)
.++++++++.|+ ...+++||||+|++||+.||+|.||||||||+++|.|++. |++|+|.++|+++.. ...+.
T Consensus 4 ~l~~~~itK~f~--~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~--P~~GeI~v~G~~v~~~sP~dA~~~ 79 (501)
T COG3845 4 ALEMRGITKRFP--GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ--PDSGEIRVDGKEVRIKSPRDAIRL 79 (501)
T ss_pred eEEEeccEEEcC--CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc--CCcceEEECCEEeccCCHHHHHHc
Confidence 578999999995 5789999999999999999999999999999999999998 799999999998643 34677
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
.||+|+|++.|++++||.|||.++..............+++++++.+.+||.=..|.+|++ ||-||||||.|-++
T Consensus 80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~d-----LsVG~qQRVEIlKa 154 (501)
T COG3845 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVAD-----LSVGEQQRVEILKA 154 (501)
T ss_pred CCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeec-----CCcchhHHHHHHHH
Confidence 8999999999999999999999987532222345566778899999999999888999987 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecC
Q 048718 668 MVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGP 738 (1118)
Q Consensus 668 Ll~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~ 738 (1118)
|..+|++|||||||+-|-|....+++++|+.++++|+|||+|||-+.+ +.+.+|++.||.+ |+++..-+
T Consensus 155 Lyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~E-v~~iaDrvTVLR~-Gkvvgt~~ 223 (501)
T COG3845 155 LYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKE-VMAIADRVTVLRR-GKVVGTVD 223 (501)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHH-HHHhhCeeEEEeC-CeEEeeec
Confidence 999999999999999999999999999999999999999999999986 5689999999976 57765544
No 302
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-36 Score=343.57 Aligned_cols=224 Identities=26% Similarity=0.417 Sum_probs=187.0
Q ss_pred CceEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhh
Q 048718 509 PTIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSY 585 (1118)
Q Consensus 509 ~~~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~ 585 (1118)
....|+|+||+|.|. .++++|+||||++.||+.+||+||||+||||++|+|-.+.+ ..+|.|.+||+++. ...+
T Consensus 534 ~~G~i~fsnvtF~Y~-p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd--v~sGsI~iDgqdIrnvt~~SL 610 (790)
T KOG0056|consen 534 TQGKIEFSNVTFAYD-PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD--VNSGSITIDGQDIRNVTQSSL 610 (790)
T ss_pred cCCeEEEEEeEEecC-CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh--ccCceEEEcCchHHHHHHHHH
Confidence 356799999999996 46899999999999999999999999999999999999998 67999999999874 3578
Q ss_pred cCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 048718 586 KRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVG 665 (1118)
Q Consensus 586 r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIA 665 (1118)
|+.||.||||..+|.+ |+..||+|+..-..++.+..+.+.+.+++- .+++.+.++++||+.+ -.|||||||||+||
T Consensus 611 Rs~IGVVPQDtvLFNd-TI~yNIryak~~AsneevyaAAkAA~IHdr--Il~fPegY~t~VGERG-LkLSGGEKQRVAiA 686 (790)
T KOG0056|consen 611 RSSIGVVPQDTVLFND-TILYNIRYAKPSASNEEVYAAAKAAQIHDR--ILQFPEGYNTRVGERG-LKLSGGEKQRVAIA 686 (790)
T ss_pred HHhcCcccCcceeecc-eeeeheeecCCCCChHHHHHHHHHhhHHHH--HhcCchhhhhhhhhcc-cccCCcchhhHHHH
Confidence 9999999999999955 999999997432211111122222223322 3678899999999822 23899999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 666 LEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 666 rALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
|+++++|.+++|||.||+||..+.+.|...|.++.. ++|.|++.|.++.. -.+|.++++.+ |+|++.|.-+|+.
T Consensus 687 RtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLSTi--vnAD~ILvi~~-G~IvErG~HeeLl 760 (790)
T KOG0056|consen 687 RTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLSTI--VNADLILVISN-GRIVERGRHEELL 760 (790)
T ss_pred HHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehhe--ecccEEEEEeC-CeEeecCcHHHHH
Confidence 999999999999999999999999999999998874 78999999999854 47999999976 6999999987764
No 303
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.6e-35 Score=316.47 Aligned_cols=199 Identities=24% Similarity=0.360 Sum_probs=158.4
Q ss_pred EEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-------hhhc
Q 048718 514 AFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-------QSYK 586 (1118)
Q Consensus 514 ~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-------~~~r 586 (1118)
.+.|+.+.|++ .+.+|+|+||+|++||+++|+|||||||||||++|+|+++ +++|+|.++|+++.. ...+
T Consensus 2 ~~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (218)
T cd03290 2 QVTNGYFSWGS-GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ--TLEGKVHWSNKNESEPSFEATRSRNR 78 (218)
T ss_pred eeeeeEEecCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCcccccccccccchhhc
Confidence 46788999863 3679999999999999999999999999999999999997 689999999976532 1245
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCccCCCCCHHHH
Q 048718 587 RIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRD-------SLVGTVEKRGISGGQR 659 (1118)
Q Consensus 587 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~d-------t~vg~~~~rgLSGGER 659 (1118)
+.++|++|++.++ ..||+||+.+... .... ...++++.++|.+..+ +..+ ..+..||||||
T Consensus 79 ~~i~~~~q~~~~~-~~t~~~nl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LS~G~~ 146 (218)
T cd03290 79 YSVAYAAQKPWLL-NATVEENITFGSP------FNKQ----RYKAVTDACSLQPDIDLLPFGDQTEIG-ERGINLSGGQR 146 (218)
T ss_pred ceEEEEcCCCccc-cccHHHHHhhcCc------CCHH----HHHHHHHHhCcHHHHHhCcCccccCcc-cCCCcCCHHHH
Confidence 6799999999887 5799999987531 1111 1334555566543321 1111 12456999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEec
Q 048718 660 KRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLR--ALRREALEGVNICTVVHQPSYALFRMFDDLILLAK 729 (1118)
Q Consensus 660 QRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~--~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~ 729 (1118)
|||+||++|+.+|++|||||||+|||+.++..+++ .++.+.+.|.|+|+++|+++. + ..+|++++|.+
T Consensus 147 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~-~-~~~d~i~~l~~ 216 (218)
T cd03290 147 QRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY-L-PHADWIIAMKD 216 (218)
T ss_pred HHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH-H-hhCCEEEEecC
Confidence 99999999999999999999999999999999998 666665568999999999975 3 56999999965
No 304
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.7e-35 Score=335.57 Aligned_cols=187 Identities=31% Similarity=0.462 Sum_probs=163.7
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-hhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHH
Q 048718 545 VMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-QSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKA 623 (1118)
Q Consensus 545 IlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~ 623 (1118)
|+||||||||||||+|+|+++ +++|+|.++|+++.. ...++.++|++|++.+++++||+||+.|+...+ .....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ--PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHH
Confidence 689999999999999999998 689999999988642 234678999999999999999999999986532 22344
Q ss_pred HHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-
Q 048718 624 EKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE- 702 (1118)
Q Consensus 624 ~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~- 702 (1118)
+..++++++++.+||.+..++++.+ |||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKPHQ-----LSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 4456789999999999888888765 9999999999999999999999999999999999999999999998765
Q ss_pred CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 703 GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 703 G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
|+|+|++||++++ +.+++|++++|.+ |++++.|+++++.
T Consensus 151 g~tiiivTHd~~e-~~~~~d~i~vl~~-G~i~~~g~~~~~~ 189 (325)
T TIGR01187 151 GITFVFVTHDQEE-AMTMSDRIAIMRK-GKIAQIGTPEEIY 189 (325)
T ss_pred CCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEEcCHHHHH
Confidence 8999999999875 5688999999976 6999999998763
No 305
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.2e-35 Score=355.35 Aligned_cols=215 Identities=24% Similarity=0.336 Sum_probs=178.4
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---h-hhcC
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---Q-SYKR 587 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~-~~r~ 587 (1118)
.++++||+. .+|+||||+|++||+++|+||||||||||||+|+|+.+ |.+|+|.++|.++.. . ..++
T Consensus 268 ~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~ 338 (510)
T PRK15439 268 VLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP--ARGGRIMLNGKEINALSTAQRLAR 338 (510)
T ss_pred eEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEECCCCCHHHHHhC
Confidence 588899873 26999999999999999999999999999999999997 689999999987632 1 2356
Q ss_pred eEEEEcCCC---CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHHH
Q 048718 588 IIGFVPQDD---IVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-HIRDSLVGTVEKRGISGGQRKRVN 663 (1118)
Q Consensus 588 ~IgyV~Qd~---~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-~~~dt~vg~~~~rgLSGGERQRVs 663 (1118)
.|+|+||++ .+++.+||.||+.................++.++++++.+||. +..++++++ |||||||||+
T Consensus 339 ~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgG~kqrl~ 413 (510)
T PRK15439 339 GLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAART-----LSGGNQQKVL 413 (510)
T ss_pred CcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcccc-----CCcHHHHHHH
Confidence 799999984 4788899999996432111010011222335688999999997 678888876 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 664 VGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 664 IArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
||+||+.+|+||||||||+|||+.++..+.+.|++++++|.|||++|||++. +.+++|++++|.+ |++++.|.++++
T Consensus 414 la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~-i~~~~d~i~~l~~-G~i~~~~~~~~~ 490 (510)
T PRK15439 414 IAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEE-IEQMADRVLVMHQ-GEISGALTGAAI 490 (510)
T ss_pred HHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHH-HHHhCCEEEEEEC-CEEEEEEccccC
Confidence 9999999999999999999999999999999999998789999999999976 5688999999975 689988876543
No 306
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-35 Score=306.18 Aligned_cols=167 Identities=36% Similarity=0.627 Sum_probs=147.8
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcCeE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKRII 589 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~I 589 (1118)
++++|+++.|.++.+.+|+|+||+|++||+++|+||||||||||+++|+|+++ +.+|+|.++|+++.. ..+++.+
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i 78 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD--PTSGEILIDGVDLRDLDLESLRKNI 78 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEhhhcCHHHHHhhE
Confidence 46889999995432379999999999999999999999999999999999998 689999999987532 3456789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 048718 590 GFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMV 669 (1118)
Q Consensus 590 gyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl 669 (1118)
+|++|++.+++ .||.||+ |||||||||+||++|+
T Consensus 79 ~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~~~rl~la~al~ 112 (171)
T cd03228 79 AYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQRQRIAIARALL 112 (171)
T ss_pred EEEcCCchhcc-chHHHHh---------------------------------------------hCHHHHHHHHHHHHHh
Confidence 99999998776 5998887 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecC
Q 048718 670 MEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKG 730 (1118)
Q Consensus 670 ~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~G 730 (1118)
.+|++|||||||+|||+.++..+.+.|+++. +++|||++||+++. +.. +|++++|.+|
T Consensus 113 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~~~-~d~~~~l~~g 170 (171)
T cd03228 113 RDPPILILDEATSALDPETEALILEALRALA-KGKTVIVIAHRLST-IRD-ADRIIVLDDG 170 (171)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-HHh-CCEEEEEcCC
Confidence 9999999999999999999999999999885 47999999999876 444 9999999764
No 307
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=8.6e-36 Score=393.87 Aligned_cols=215 Identities=22% Similarity=0.374 Sum_probs=183.7
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcC
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKR 587 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 587 (1118)
..|+|+||+++|.++.+++|+||||+|++||.+||+|+||||||||+++|.|+++ +.+|+|+|||.++. ...+|+
T Consensus 1236 g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~--p~~G~I~IDG~dI~~i~l~~LR~ 1313 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE--LERGRILIDGCDISKFGLMDLRK 1313 (1622)
T ss_pred CcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCEecccCCHHHHHh
Confidence 4699999999996444579999999999999999999999999999999999998 68999999999864 457899
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCCCCCHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGL-------QHIRDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL-------~~~~dt~vg~~~~rgLSGGERQ 660 (1118)
+|+|||||+.+|.. ||+|||.++. ..++++ +.++++..+| ....|+.+|+ ....|||||||
T Consensus 1314 ~IsiVpQdp~LF~G-TIreNLd~~~------~~tdee----i~~Al~~a~l~~~I~~lp~GLdt~Vge-~G~nLSgGQrQ 1381 (1622)
T PLN03130 1314 VLGIIPQAPVLFSG-TVRFNLDPFN------EHNDAD----LWESLERAHLKDVIRRNSLGLDAEVSE-AGENFSVGQRQ 1381 (1622)
T ss_pred ccEEECCCCccccc-cHHHHhCcCC------CCCHHH----HHHHHHHcCcHHHHHhCccccCccccC-CCCCCCHHHHH
Confidence 99999999999976 9999997642 122322 4444444444 3456788876 44569999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
|++|||||+++|+|||||||||+||+.+...|.+.|++.. +++|+|+|+|+++. + ..+|+|+||++ |++++.|+++
T Consensus 1382 rlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t-I-~~~DrIlVLd~-G~IvE~Gt~~ 1457 (1622)
T PLN03130 1382 LLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT-I-IDCDRILVLDA-GRVVEFDTPE 1457 (1622)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHH-H-HhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999999999999999999864 58999999999875 3 56999999976 6999999999
Q ss_pred hHH
Q 048718 741 KVE 743 (1118)
Q Consensus 741 ~l~ 743 (1118)
++.
T Consensus 1458 eLl 1460 (1622)
T PLN03130 1458 NLL 1460 (1622)
T ss_pred HHH
Confidence 875
No 308
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=6.7e-36 Score=394.12 Aligned_cols=215 Identities=20% Similarity=0.353 Sum_probs=183.5
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcC
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKR 587 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 587 (1118)
..|+|+||+++|..+.+++|+|||++|++||.+||+||||||||||+++|.|+++ +++|+|.+||.++. ...+|+
T Consensus 1233 g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~--p~~G~I~IdG~di~~i~~~~lR~ 1310 (1495)
T PLN03232 1233 GSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE--LEKGRIMIDDCDVAKFGLTDLRR 1310 (1495)
T ss_pred CcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCceEEECCEEhhhCCHHHHHh
Confidence 3699999999996444679999999999999999999999999999999999998 68999999999864 457899
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCCCCCHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGL-------QHIRDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL-------~~~~dt~vg~~~~rgLSGGERQ 660 (1118)
+|+|||||+.+|+. |++|||.++. ..++++ +.++++..+| .+..|+.+|+ ....|||||||
T Consensus 1311 ~i~iVpQdp~LF~g-TIr~NL~~~~------~~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQ 1378 (1495)
T PLN03232 1311 VLSIIPQSPVLFSG-TVRFNIDPFS------EHNDAD----LWEALERAHIKDVIDRNPFGLDAEVSE-GGENFSVGQRQ 1378 (1495)
T ss_pred hcEEECCCCeeeCc-cHHHHcCCCC------CCCHHH----HHHHHHHcCCHHHHHhCcCCCCceecC-CCCCCCHHHHH
Confidence 99999999999976 9999997642 223332 4455555554 3456777875 44569999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
|++|||||+++|+|||||||||+||+.+...|.+.|++.. +++|+|+|+|+++. + ..+|+|++|++ |++++.|+++
T Consensus 1379 rlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~t-i-~~~DrIlVL~~-G~ivE~Gt~~ 1454 (1495)
T PLN03232 1379 LLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNT-I-IDCDKILVLSS-GQVLEYDSPQ 1454 (1495)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999999999999998764 58999999999874 3 56999999976 6999999999
Q ss_pred hHH
Q 048718 741 KVE 743 (1118)
Q Consensus 741 ~l~ 743 (1118)
++.
T Consensus 1455 eLl 1457 (1495)
T PLN03232 1455 ELL 1457 (1495)
T ss_pred HHH
Confidence 874
No 309
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-35 Score=307.14 Aligned_cols=234 Identities=27% Similarity=0.393 Sum_probs=201.7
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh----hhhc
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI----QSYK 586 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r 586 (1118)
..++++||+++..++ +.||++||++|++||+.+||||||||||||.++|+|.-...+++|+|+++|+++.. .+.|
T Consensus 2 ~~L~I~dLhv~v~~~-keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 2 MMLEIKDLHVEVEGK-KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred ceeEEeeeEEEecCc-hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 358899999999532 58999999999999999999999999999999999987544689999999998632 3457
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHH
Q 048718 587 RIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH-IRDSLVGTVEKRGISGGQRKRVNVG 665 (1118)
Q Consensus 587 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~-~~dt~vg~~~~rgLSGGERQRVsIA 665 (1118)
..|...||.|.=+|..|+.+.|..+...+........+....+++.++.+++.. ..++.++. |+|||||||..|+
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~----GFSGGEkKR~Eil 156 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNE----GFSGGEKKRNEIL 156 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCC----CcCcchHHHHHHH
Confidence 789999999999999999999998876543221112344567889999999986 77888876 8999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhcc--CcEEEEecCcEEEEecChhhHH
Q 048718 666 LEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMF--DDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 666 rALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~--D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
..++.+|++.|||||-||||..+-..|.+.++.++.+|.++++|||... +.++. |++.||.+ |+|+..|.+ ++.
T Consensus 157 Q~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~r--ll~~i~pD~vhvl~~-GrIv~sG~~-el~ 232 (251)
T COG0396 157 QLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQR--LLDYIKPDKVHVLYD-GRIVKSGDP-ELA 232 (251)
T ss_pred HHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHH--HHhhcCCCEEEEEEC-CEEEecCCH-HHH
Confidence 9999999999999999999999999999999999989999999999965 45666 99999987 699999999 888
Q ss_pred HHHHhcCCCC
Q 048718 744 EYFASLGITV 753 (1118)
Q Consensus 744 ~yf~~lG~~~ 753 (1118)
++++..|+.+
T Consensus 233 ~~le~~gy~~ 242 (251)
T COG0396 233 EELEEKGYDW 242 (251)
T ss_pred HHHHHhchHH
Confidence 8888888754
No 310
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=2.7e-35 Score=303.18 Aligned_cols=165 Identities=28% Similarity=0.485 Sum_probs=146.0
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFV 592 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV 592 (1118)
++++|+++.|++ ++++|+|+|++|++||+++|+||||||||||+++|+|+++ +.+|+|.++|. +.++|+
T Consensus 1 i~~~~~~~~~~~-~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~--------~~i~~~ 69 (166)
T cd03223 1 IELENLSLATPD-GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP--WGSGRIGMPEG--------EDLLFL 69 (166)
T ss_pred CEEEEEEEEcCC-CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCC--------ceEEEE
Confidence 468899999953 3579999999999999999999999999999999999997 68999999873 579999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCC
Q 048718 593 PQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEP 672 (1118)
Q Consensus 593 ~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P 672 (1118)
+|++.++ .+||+||+.+. .+ +.|||||||||+|||||+.+|
T Consensus 70 ~q~~~~~-~~tv~~nl~~~---------------------------------~~-----~~LS~G~~~rv~laral~~~p 110 (166)
T cd03223 70 PQRPYLP-LGTLREQLIYP---------------------------------WD-----DVLSGGEQQRLAFARLLLHKP 110 (166)
T ss_pred CCCCccc-cccHHHHhhcc---------------------------------CC-----CCCCHHHHHHHHHHHHHHcCC
Confidence 9998765 67999998752 11 349999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcE
Q 048718 673 SLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGV 732 (1118)
Q Consensus 673 ~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~ 732 (1118)
++|+|||||+|||+.++..+.+.|+++ +.|+|++||+++. ...+|++++|.++|.
T Consensus 111 ~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~~--~~~~d~i~~l~~~~~ 165 (166)
T cd03223 111 KFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPSL--WKFHDRVLDLDGEGG 165 (166)
T ss_pred CEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChhH--HhhCCEEEEEcCCCC
Confidence 999999999999999999999999876 6899999999864 368999999988763
No 311
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=6.4e-35 Score=318.83 Aligned_cols=198 Identities=23% Similarity=0.321 Sum_probs=160.6
Q ss_pred eeeeeEEEEe-----CCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCC
Q 048718 529 LMRSVTGKLS-----PGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLT 603 (1118)
Q Consensus 529 IL~nVSl~I~-----~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LT 603 (1118)
.|+|+++++. +||+++|+|||||||||||++|+|+++ |.+|+|.++|. .|+|++|+...++.+|
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~--p~~G~i~~~g~---------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK--PDEGDIEIELD---------TVSYKPQYIKADYEGT 77 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCc---------eEEEecccccCCCCCC
Confidence 5666666665 799999999999999999999999998 68999999984 5899999988777899
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 048718 604 VEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSG 683 (1118)
Q Consensus 604 V~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsG 683 (1118)
|+|++.+...... . .....+++++.+||.+..++.+++ |||||||||+||+||+.+|+++||||||++
T Consensus 78 v~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~~~~-----LSgGe~qrv~iaraL~~~p~llllDEPt~~ 145 (246)
T cd03237 78 VRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDREVPE-----LSGGELQRVAIAACLSKDADIYLLDEPSAY 145 (246)
T ss_pred HHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999976543110 1 112357889999998888887766 999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEecCcEEE--EecChhh----HHHHHHhcCC
Q 048718 684 LDSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAKGGVIV--YHGPVKK----VEEYFASLGI 751 (1118)
Q Consensus 684 LD~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv--~~G~~~~----l~~yf~~lG~ 751 (1118)
||+.++..+.+.|+++++ .|+|||+++|+++. +..++|++++|..+ ..+ ..+++.+ +..|+..+++
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~-~~~~~d~i~~l~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~ 218 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDIIM-IDYLADRLIVFEGE-PSVNGVANPPQSLRSGMNRFLKNLDI 218 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEcCC-CeeEEEeCCchHHHHHHHHHHHHCCC
Confidence 999999999999999975 48999999999875 45789999999643 222 3344443 3455555554
No 312
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.2e-34 Score=355.82 Aligned_cols=219 Identities=24% Similarity=0.389 Sum_probs=190.6
Q ss_pred EEEEEeEEEEEcCC--cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hh--
Q 048718 512 EVAFKDLTITLKGK--NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QS-- 584 (1118)
Q Consensus 512 ~l~~knLs~~~~~~--~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~-- 584 (1118)
.++++|+++.|+.+ .+++|+|+||+|++||+++|+|||||||||||++|+|+++ +++|+|.++|+++.. ..
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~i~~~~~~~~~ 81 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK--PTSGTYRVAGQDVATLDADALA 81 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcCcCCHHHHH
Confidence 48899999999532 2579999999999999999999999999999999999998 689999999987642 12
Q ss_pred --hcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 048718 585 --YKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRV 662 (1118)
Q Consensus 585 --~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRV 662 (1118)
.++.++|++|++.+++++|+.||+.+..... .....+.++++.++++.+||.+..++.+++ |||||+|||
T Consensus 82 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~-----LS~Gq~qrv 153 (648)
T PRK10535 82 QLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQPSQ-----LSGGQQQRV 153 (648)
T ss_pred HHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCccc-----CCHHHHHHH
Confidence 2568999999999999999999999865321 223445556789999999999888888766 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 663 NVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 663 sIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|+|+++|+++.. +.+|++++|.+ |++++.|++++.
T Consensus 154 ~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~--~~~d~i~~l~~-G~i~~~g~~~~~ 230 (648)
T PRK10535 154 SIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVA--AQAERVIEIRD-GEIVRNPPAQEK 230 (648)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH--HhCCEEEEEEC-CEEEeecCcccc
Confidence 999999999999999999999999999999999999887799999999998743 57999999976 699999999876
Q ss_pred H
Q 048718 743 E 743 (1118)
Q Consensus 743 ~ 743 (1118)
.
T Consensus 231 ~ 231 (648)
T PRK10535 231 V 231 (648)
T ss_pred c
Confidence 4
No 313
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-35 Score=350.05 Aligned_cols=209 Identities=21% Similarity=0.373 Sum_probs=173.8
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFV 592 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV 592 (1118)
|+++||+++|. ++++|+|+||+|++||+++|+||||||||||||+|+|+++ +++|+|.++|. ..|||+
T Consensus 2 l~i~~ls~~~~--~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~~--------~~i~~~ 69 (530)
T PRK15064 2 LSTANITMQFG--AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE--PSAGNVSLDPN--------ERLGKL 69 (530)
T ss_pred EEEEEEEEEeC--CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC--------CEEEEE
Confidence 68899999994 4679999999999999999999999999999999999997 68999999872 359999
Q ss_pred cCCCCCCCCCCHHHHHHHHHh-hc-----------cCC---C--------------CCHHHHHHHHHHHHHHcCCCccc-
Q 048718 593 PQDDIVHGNLTVEENLWFSAR-CR-----------LSA---D--------------LPKAEKVLVVERVIESLGLQHIR- 642 (1118)
Q Consensus 593 ~Qd~~l~~~LTV~EnL~f~a~-lr-----------~~~---~--------------~~~~~~~~~v~~lL~~lgL~~~~- 642 (1118)
+|++.+++.+||+||+.++.. .+ .+. . ....+.+.+++++++.+||.+..
T Consensus 70 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 149 (530)
T PRK15064 70 RQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQH 149 (530)
T ss_pred eccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHh
Confidence 999999999999999987531 00 000 0 00011235688899999997643
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccC
Q 048718 643 DSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFD 722 (1118)
Q Consensus 643 dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D 722 (1118)
+..+++ |||||||||+||++|+.+|+||||||||+|||+.++..+.+.|++ .|.|||+|+|+.+. +.+++|
T Consensus 150 ~~~~~~-----LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~~-~~~~~d 220 (530)
T PRK15064 150 YGLMSE-----VAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRHF-LNSVCT 220 (530)
T ss_pred cCchhh-----cCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHHH-HHhhcc
Confidence 455655 999999999999999999999999999999999999999998863 58999999999875 568899
Q ss_pred cEEEEecCcEE-EEecChhhHH
Q 048718 723 DLILLAKGGVI-VYHGPVKKVE 743 (1118)
Q Consensus 723 ~vivL~~GG~i-v~~G~~~~l~ 743 (1118)
++++|.+ |++ ++.|++++..
T Consensus 221 ~i~~l~~-g~i~~~~g~~~~~~ 241 (530)
T PRK15064 221 HMADLDY-GELRVYPGNYDEYM 241 (530)
T ss_pred eEEEEeC-CEEEEecCCHHHHH
Confidence 9999986 577 5889887654
No 314
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=9.5e-35 Score=298.26 Aligned_cols=158 Identities=30% Similarity=0.483 Sum_probs=141.8
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh----hhhcCe
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI----QSYKRI 588 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r~~ 588 (1118)
++++||++.|+ ++++|+++||+|++||+++|+|||||||||||++|+|+.+ +.+|+|.++|+++.. ...++.
T Consensus 1 l~~~~l~~~~~--~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~~~~~~~ 76 (163)
T cd03216 1 LELRGITKRFG--GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK--PDSGEILVDGKEVSFASPRDARRAG 76 (163)
T ss_pred CEEEEEEEEEC--CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEECCcCCHHHHHhcC
Confidence 46899999995 3579999999999999999999999999999999999998 689999999987642 124567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 048718 589 IGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEM 668 (1118)
Q Consensus 589 IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArAL 668 (1118)
++|++| |||||||||+|||||
T Consensus 77 i~~~~q-----------------------------------------------------------LS~G~~qrl~laral 97 (163)
T cd03216 77 IAMVYQ-----------------------------------------------------------LSVGERQMVEIARAL 97 (163)
T ss_pred eEEEEe-----------------------------------------------------------cCHHHHHHHHHHHHH
Confidence 999988 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEE
Q 048718 669 VMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVY 735 (1118)
Q Consensus 669 l~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~ 735 (1118)
+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|+++|++.. +.+.+|++++|.+ |++++
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-~~~~~d~~~~l~~-g~i~~ 162 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE-VFEIADRVTVLRD-GRVVG 162 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEe
Confidence 99999999999999999999999999999998779999999999874 4578999999976 57764
No 315
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=7.4e-35 Score=384.38 Aligned_cols=215 Identities=21% Similarity=0.362 Sum_probs=183.9
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcC
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKR 587 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 587 (1118)
..|+|+||+++|..+.+.+|+||||+|++||.+||+|++|||||||+++|.|+++ +.+|+|++||.++. ...+|+
T Consensus 1307 G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~di~~i~l~~LR~ 1384 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGREIGAYGLRELRR 1384 (1560)
T ss_pred CeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcccCCHHHHHh
Confidence 4699999999997544569999999999999999999999999999999999998 68999999999864 457899
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCCCHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-------HIRDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-------~~~dt~vg~~~~rgLSGGERQ 660 (1118)
.|+||||++.+|.. ||+|||.... ..+++ .+.++++..||. +..|+.+|+ ....|||||||
T Consensus 1385 ~I~iVpQdp~LF~g-TIreNIdp~~------~~sde----eI~~Al~~a~l~~~I~~lp~Gldt~vge-~G~nLSgGQrQ 1452 (1560)
T PTZ00243 1385 QFSMIPQDPVLFDG-TVRQNVDPFL------EASSA----EVWAALELVGLRERVASESEGIDSRVLE-GGSNYSVGQRQ 1452 (1560)
T ss_pred cceEECCCCccccc-cHHHHhCccc------CCCHH----HHHHHHHHCCChHHHhhCcccccccccC-CcCcCCHHHHH
Confidence 99999999999976 9999996421 22332 356666666664 346788876 45569999999
Q ss_pred HHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecCh
Q 048718 661 RVNVGLEMVME-PSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPV 739 (1118)
Q Consensus 661 RVsIArALl~~-P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~ 739 (1118)
|++|||||+++ |+|||||||||+||+.+...|.+.|++.. +++|+|+|+|+++. ...+|+|++|++ |++++.|++
T Consensus 1453 rLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~t--i~~~DrIlVLd~-G~VvE~Gt~ 1528 (1560)
T PTZ00243 1453 LMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLHT--VAQYDKIIVMDH-GAVAEMGSP 1528 (1560)
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHHH--HHhCCEEEEEEC-CEEEEECCH
Confidence 99999999996 89999999999999999999999998753 57999999999864 468999999976 699999999
Q ss_pred hhHH
Q 048718 740 KKVE 743 (1118)
Q Consensus 740 ~~l~ 743 (1118)
+++.
T Consensus 1529 ~eLl 1532 (1560)
T PTZ00243 1529 RELV 1532 (1560)
T ss_pred HHHH
Confidence 9874
No 316
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=5.6e-35 Score=385.93 Aligned_cols=215 Identities=21% Similarity=0.337 Sum_probs=183.5
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcC
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKR 587 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 587 (1118)
..|+|+||+++|+.+...+|+||||+|++||.+||+|++|||||||+++|.|+++ +.+|+|.+||.+++ ...+|+
T Consensus 1283 g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~dI~~i~~~~LR~ 1360 (1522)
T TIGR00957 1283 GRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLNIAKIGLHDLRF 1360 (1522)
T ss_pred CcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEEccccCHHHHHh
Confidence 4699999999997544579999999999999999999999999999999999998 68999999999864 457899
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCCCHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-------HIRDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-------~~~dt~vg~~~~rgLSGGERQ 660 (1118)
+|+|||||+.+|.. ||+|||.... ..++++ +.++++..+|. +..|+.+|+ ....|||||||
T Consensus 1361 ~i~iVpQdp~LF~g-TIr~NLdp~~------~~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQ 1428 (1522)
T TIGR00957 1361 KITIIPQDPVLFSG-SLRMNLDPFS------QYSDEE----VWWALELAHLKTFVSALPDKLDHECAE-GGENLSVGQRQ 1428 (1522)
T ss_pred cCeEECCCCcccCc-cHHHHcCccc------CCCHHH----HHHHHHHcCcHHHHhhCccCCCceecC-CCCcCCHHHHH
Confidence 99999999999976 9999996321 223333 44555555553 456788876 44569999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
|++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|+|+|+|+++. ...+|+|++|++ |+++++|+++
T Consensus 1429 rl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~t--i~~~DrIlVld~-G~IvE~G~~~ 1504 (1522)
T TIGR00957 1429 LVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNT--IMDYTRVIVLDK-GEVAEFGAPS 1504 (1522)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999999999999998764 58999999999874 367999999976 6999999999
Q ss_pred hHH
Q 048718 741 KVE 743 (1118)
Q Consensus 741 ~l~ 743 (1118)
++.
T Consensus 1505 eLl 1507 (1522)
T TIGR00957 1505 NLL 1507 (1522)
T ss_pred HHH
Confidence 875
No 317
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.3e-34 Score=322.99 Aligned_cols=222 Identities=27% Similarity=0.413 Sum_probs=195.6
Q ss_pred ceEEEEEeEEEEEcCC---------cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEec
Q 048718 510 TIEVAFKDLTITLKGK---------NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVA 580 (1118)
Q Consensus 510 ~~~l~~knLs~~~~~~---------~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~ 580 (1118)
.+.++.+||.+.|+-+ ...++++||+++++||.++|+|.||||||||-.+|.++++ .+|+|.++|+++
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~---s~G~I~F~G~~i 350 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP---SQGEIRFDGQDI 350 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcC---cCceEEECCccc
Confidence 4568999999888521 1368999999999999999999999999999999999997 469999999986
Q ss_pred Ch------hhhcCeEEEEcCCCC--CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccC
Q 048718 581 SI------QSYKRIIGFVPQDDI--VHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-HIRDSLVGTVEK 651 (1118)
Q Consensus 581 ~~------~~~r~~IgyV~Qd~~--l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-~~~dt~vg~~~~ 651 (1118)
+. ..+|+++-.|||||. +-|.|||.+-|.-++..+.+ ..+.+++.+++.++|+.+||+ ..+++++.+
T Consensus 351 ~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhE--- 426 (534)
T COG4172 351 DGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRNRYPHE--- 426 (534)
T ss_pred cccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhcCCcc---
Confidence 42 347889999999984 77899999999999877643 567888889999999999997 456777655
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEecC
Q 048718 652 RGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAKG 730 (1118)
Q Consensus 652 rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~G 730 (1118)
.|||||||++|||||+.+|++++||||||+||-..+.+|+++|++|.+ .|.+-++|+||+.. +..++|+|+||.+
T Consensus 427 --FSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~V-vrAl~~~viVm~~- 502 (534)
T COG4172 427 --FSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAV-VRALCHRVIVMRD- 502 (534)
T ss_pred --cCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHH-HHHhhceEEEEeC-
Confidence 999999999999999999999999999999999999999999999985 49999999999874 6789999999975
Q ss_pred cEEEEecChhhH
Q 048718 731 GVIVYHGPVKKV 742 (1118)
Q Consensus 731 G~iv~~G~~~~l 742 (1118)
|+||+.|+.+++
T Consensus 503 GkiVE~G~~~~i 514 (534)
T COG4172 503 GKIVEQGPTEAV 514 (534)
T ss_pred CEEeeeCCHHHH
Confidence 699999999877
No 318
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.2e-34 Score=350.07 Aligned_cols=210 Identities=23% Similarity=0.340 Sum_probs=174.2
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEE
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIG 590 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 590 (1118)
..|+++||++.|.+ ++++|+||||+|++||+++|+|||||||||||++|+|+++ |++|+|.+++ ...||
T Consensus 5 ~~l~i~~l~~~y~~-~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~--p~~G~i~~~~--------~~~i~ 73 (556)
T PRK11819 5 YIYTMNRVSKVVPP-KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFEGEARPAP--------GIKVG 73 (556)
T ss_pred EEEEEeeEEEEeCC-CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecC--------CCEEE
Confidence 35899999999941 4679999999999999999999999999999999999998 6899999975 24699
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhh-c-----cC-----CCCCH----------------------HHHHHHHHHHHHHcC
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARC-R-----LS-----ADLPK----------------------AEKVLVVERVIESLG 637 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~l-r-----~~-----~~~~~----------------------~~~~~~v~~lL~~lg 637 (1118)
||+|++.+++.+||.||+.++... + .. ..... .+...+++++++.+|
T Consensus 74 ~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 153 (556)
T PRK11819 74 YLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALR 153 (556)
T ss_pred EEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCC
Confidence 999999999999999999875321 0 00 00000 011346788999999
Q ss_pred CCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHH
Q 048718 638 LQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYAL 717 (1118)
Q Consensus 638 L~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i 717 (1118)
|.. .++.+++ |||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++||+++. +
T Consensus 154 l~~-~~~~~~~-----LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~---~~tviiisHd~~~-~ 223 (556)
T PRK11819 154 CPP-WDAKVTK-----LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVVAVTHDRYF-L 223 (556)
T ss_pred CCc-ccCchhh-----cCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC---CCeEEEEeCCHHH-H
Confidence 964 6777766 9999999999999999999999999999999999999999999876 3599999999875 4
Q ss_pred HhccCcEEEEecCcEEE-EecChhhH
Q 048718 718 FRMFDDLILLAKGGVIV-YHGPVKKV 742 (1118)
Q Consensus 718 ~~~~D~vivL~~GG~iv-~~G~~~~l 742 (1118)
.+.+|++++|.+ |+++ +.|+.++.
T Consensus 224 ~~~~d~i~~l~~-g~i~~~~g~~~~~ 248 (556)
T PRK11819 224 DNVAGWILELDR-GRGIPWEGNYSSW 248 (556)
T ss_pred HhhcCeEEEEeC-CEEEEecCCHHHH
Confidence 578999999986 5665 88887754
No 319
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.1e-34 Score=349.63 Aligned_cols=206 Identities=22% Similarity=0.336 Sum_probs=170.5
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcC
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKR 587 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 587 (1118)
..++++||+|+|++ ++++|+|+|++|++||.++|+||||||||||+++|+|+++ |++|+|.+||.++. ...+++
T Consensus 321 ~~i~~~~v~f~y~~-~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~~~~~~~~~~~~ 397 (547)
T PRK10522 321 QTLELRNVTFAYQD-NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ--PQSGEILLDGKPVTAEQPEDYRK 397 (547)
T ss_pred ceEEEEEEEEEeCC-CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEECCCCCHHHHhh
Confidence 36999999999963 3579999999999999999999999999999999999998 68999999999864 346788
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
.|+||+|++.+|+. |++|| + .. ...+.++++++.+++.+..+..-+......||||||||++||||
T Consensus 398 ~i~~v~q~~~lf~~-ti~~n---~------~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARa 463 (547)
T PRK10522 398 LFSAVFTDFHLFDQ-LLGPE---G------KP----ANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLA 463 (547)
T ss_pred heEEEecChhHHHH-hhccc---c------Cc----hHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHH
Confidence 99999999998864 88877 1 01 12234678889998876443211111135699999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEe
Q 048718 668 MVMEPSLLILDEPTSGLDSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYH 736 (1118)
Q Consensus 668 Ll~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~ 736 (1118)
|+++|++|+|||||++||+.++..+.+.|.+..+ .|+|+|+++|+++. .+.+|++++|++ |++++.
T Consensus 464 l~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~--~~~~d~i~~l~~-G~i~e~ 530 (547)
T PRK10522 464 LAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHY--FIHADRLLEMRN-GQLSEL 530 (547)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHH--HHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999876653 58999999999853 478999999986 577765
No 320
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=7.1e-35 Score=346.87 Aligned_cols=215 Identities=23% Similarity=0.345 Sum_probs=172.2
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh----hhhc
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI----QSYK 586 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r 586 (1118)
..++++||++.|+ ++.+|+|+||+|++||+++|+||||||||||||+|+|+.++ +++|+|.++|++... ...+
T Consensus 259 ~~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~~~~~~~~~~~ 335 (490)
T PRK10938 259 PRIVLNNGVVSYN--DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRRGSGETIWDIK 335 (490)
T ss_pred ceEEEeceEEEEC--CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccCCCCCCHHHHH
Confidence 3589999999994 35799999999999999999999999999999999998651 258999999975421 2345
Q ss_pred CeEEEEcCCCCCCCC--CCHHHHHHHHHhh--ccCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHH
Q 048718 587 RIIGFVPQDDIVHGN--LTVEENLWFSARC--RLSADLPKAEKVLVVERVIESLGLQH-IRDSLVGTVEKRGISGGQRKR 661 (1118)
Q Consensus 587 ~~IgyV~Qd~~l~~~--LTV~EnL~f~a~l--r~~~~~~~~~~~~~v~~lL~~lgL~~-~~dt~vg~~~~rgLSGGERQR 661 (1118)
+.|+|++|++.++.. .|+++++.++... ........ ..++.++++++.+||.+ ..++++++ ||||||||
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGq~qr 409 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSD-RQQKLAQQWLDILGIDKRTADAPFHS-----LSWGQQRL 409 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCH-HHHHHHHHHHHHcCCchhhccCchhh-----CCHHHHHH
Confidence 679999998765433 5777776544211 00011122 23456889999999987 77888776 99999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEEcCCcHHHHh-ccCcEEEEecCcEEEEe
Q 048718 662 VNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEG-VNICTVVHQPSYALFR-MFDDLILLAKGGVIVYH 736 (1118)
Q Consensus 662 VsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G-~TIIvvtHq~~~~i~~-~~D~vivL~~GG~iv~~ 736 (1118)
|+||+||+.+|+||||||||+|||+.++..+.+.|++++++| .|||++||+++.. .+ .+|++++|.+ |++++.
T Consensus 410 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~-~~~~~d~v~~l~~-G~i~~~ 484 (490)
T PRK10938 410 ALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDA-PACITHRLEFVPD-GDIYRY 484 (490)
T ss_pred HHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhh-hhhhheeEEEecC-CceEEe
Confidence 999999999999999999999999999999999999998765 5799999998764 34 5788999876 577654
No 321
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-34 Score=345.78 Aligned_cols=216 Identities=22% Similarity=0.335 Sum_probs=177.0
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh----hhhcC
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI----QSYKR 587 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r~ 587 (1118)
.|+++||++.+ +.+|+||||+|++||+++|+|||||||||||++|+|+.+ |++|+|.++|+++.. ...++
T Consensus 250 ~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~ 323 (491)
T PRK10982 250 ILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE--KSAGTITLHGKKINNHNANEAINH 323 (491)
T ss_pred EEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc--CCccEEEECCEECCCCCHHHHHHC
Confidence 58999998863 359999999999999999999999999999999999998 689999999987632 12356
Q ss_pred eEEEEcCCC---CCCCCCCHHHHHHHHH-h-hccCCC-CCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHH
Q 048718 588 IIGFVPQDD---IVHGNLTVEENLWFSA-R-CRLSAD-LPKAEKVLVVERVIESLGLQ-HIRDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 588 ~IgyV~Qd~---~l~~~LTV~EnL~f~a-~-lr~~~~-~~~~~~~~~v~~lL~~lgL~-~~~dt~vg~~~~rgLSGGERQ 660 (1118)
.++|++|+. .+++.+|+.+|+.+.. . ...... ......+..++++++.+++. +..++.+++ |||||||
T Consensus 324 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGq~q 398 (491)
T PRK10982 324 GFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGS-----LSGGNQQ 398 (491)
T ss_pred CCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccccccc-----CCcHHHH
Confidence 799999985 4688898887743321 0 000001 12223345678899999995 456777766 9999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
||+||++|+.+|+||||||||+|||+.++..+++.|+++.++|.|||++|||++. +.+++|++++|.+ |+++..++.+
T Consensus 399 rv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~-~~~~~d~v~~l~~-g~i~~~~~~~ 476 (491)
T PRK10982 399 KVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPE-LLGITDRILVMSN-GLVAGIVDTK 476 (491)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHH-HHhhCCEEEEEEC-CEEEEEEccc
Confidence 9999999999999999999999999999999999999998889999999999986 4689999999976 6888766553
No 322
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.8e-35 Score=298.03 Aligned_cols=192 Identities=27% Similarity=0.457 Sum_probs=170.3
Q ss_pred CcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcCeEEEEcCCCCCCCC
Q 048718 525 KNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKRIIGFVPQDDIVHGN 601 (1118)
Q Consensus 525 ~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~IgyV~Qd~~l~~~ 601 (1118)
++.+||+++||.+.+||..+|.||||||||||||+++.+.+ |++|++++.|++++ ...+|.+|+|+.|.+.||+.
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis--p~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~ 91 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD 91 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC--CCCceEEEcCccccccChHHHHHHHHHHHcCcccccc
Confidence 55789999999999999999999999999999999999998 79999999999875 46799999999999999986
Q ss_pred CCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 048718 602 LTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHI-RDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEP 680 (1118)
Q Consensus 602 LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~-~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEP 680 (1118)
||+|||.|.-..+..+ + .+.+..++|++++|.+. .++.+.+ ||||||||++|+|-|..-|+||+||||
T Consensus 92 -tVeDNlifP~~~r~rr--~---dr~aa~~llar~~l~~~~L~k~it~-----lSGGE~QriAliR~Lq~~P~ILLLDE~ 160 (223)
T COG4619 92 -TVEDNLIFPWQIRNRR--P---DRAAALDLLARFALPDSILTKNITE-----LSGGEKQRIALIRNLQFMPKILLLDEI 160 (223)
T ss_pred -chhhccccchHHhccC--C---ChHHHHHHHHHcCCchhhhcchhhh-----ccchHHHHHHHHHHhhcCCceEEecCc
Confidence 9999999987766432 2 22356788999999764 5666655 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH-HCCCEEEEEEcCCcHHHHhccCcEEEEecC
Q 048718 681 TSGLDSSSSQLLLRALRREA-LEGVNICTVVHQPSYALFRMFDDLILLAKG 730 (1118)
Q Consensus 681 TsGLD~~sa~~i~~~Lr~la-~~G~TIIvvtHq~~~~i~~~~D~vivL~~G 730 (1118)
||+||+.+++.|-++|.++. .+.+.++.+||++++++ +.+|+++-+..|
T Consensus 161 TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~-rha~k~itl~~G 210 (223)
T COG4619 161 TSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAI-RHADKVITLQPG 210 (223)
T ss_pred hhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHh-hhhheEEEeccC
Confidence 99999999999999998887 56899999999998765 899999999764
No 323
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.4e-34 Score=347.23 Aligned_cols=210 Identities=23% Similarity=0.321 Sum_probs=172.3
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEE
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGF 591 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 591 (1118)
.++++||+++|.+ ++++|+|+||+|++||+++|+|||||||||||++|+|+.+ |++|+|.+++ +..|||
T Consensus 4 ~i~~~nls~~~~~-~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~--p~~G~i~~~~--------~~~i~~ 72 (552)
T TIGR03719 4 IYTMNRVSKVVPP-KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFNGEARPAP--------GIKVGY 72 (552)
T ss_pred EEEEeeEEEecCC-CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecC--------CCEEEE
Confidence 5889999999951 3579999999999999999999999999999999999997 6899999975 246999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhcc------------CCCCCHH---------------------HHHHHHHHHHHHcCC
Q 048718 592 VPQDDIVHGNLTVEENLWFSARCRL------------SADLPKA---------------------EKVLVVERVIESLGL 638 (1118)
Q Consensus 592 V~Qd~~l~~~LTV~EnL~f~a~lr~------------~~~~~~~---------------------~~~~~v~~lL~~lgL 638 (1118)
|+|++.+++.+||.||+.++..... ....... ....+++++++.+||
T Consensus 73 v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 152 (552)
T TIGR03719 73 LPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRC 152 (552)
T ss_pred EeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCC
Confidence 9999999999999999987532100 0000010 012356778888888
Q ss_pred CccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHH
Q 048718 639 QHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALF 718 (1118)
Q Consensus 639 ~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~ 718 (1118)
.. .++.+++ |||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ +.|||+|||+.+. +.
T Consensus 153 ~~-~~~~~~~-----LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~~-~~ 222 (552)
T TIGR03719 153 PP-WDADVTK-----LSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRYF-LD 222 (552)
T ss_pred Cc-ccCchhh-----cCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHHH-HH
Confidence 54 5666665 9999999999999999999999999999999999999999998765 3599999999875 55
Q ss_pred hccCcEEEEecCcEEE-EecChhhHH
Q 048718 719 RMFDDLILLAKGGVIV-YHGPVKKVE 743 (1118)
Q Consensus 719 ~~~D~vivL~~GG~iv-~~G~~~~l~ 743 (1118)
..+|++++|.+ |+++ +.|+.+++.
T Consensus 223 ~~~d~v~~l~~-g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 223 NVAGWILELDR-GRGIPWEGNYSSWL 247 (552)
T ss_pred hhcCeEEEEEC-CEEEEecCCHHHHH
Confidence 78999999986 5654 889887653
No 324
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.4e-34 Score=379.28 Aligned_cols=213 Identities=23% Similarity=0.403 Sum_probs=173.5
Q ss_pred EEEEEeEEEEEcCC-cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEEC-CEecC---hhhhc
Q 048718 512 EVAFKDLTITLKGK-NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVN-GKVAS---IQSYK 586 (1118)
Q Consensus 512 ~l~~knLs~~~~~~-~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~in-G~~~~---~~~~r 586 (1118)
.|+++||++.|+.. ++++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|+++ |.++. ...+|
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~i~~g~~i~~~~~~~lr 459 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD--PTEGDIIINDSHNLKDINLKWWR 459 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc--CCCCeEEEeCCcchhhCCHHHHH
Confidence 69999999999643 2479999999999999999999999999999999999998 689999994 66553 34578
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHhhcc---------CC---------C---------------------CC------
Q 048718 587 RIIGFVPQDDIVHGNLTVEENLWFSARCRL---------SA---------D---------------------LP------ 621 (1118)
Q Consensus 587 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~---------~~---------~---------------------~~------ 621 (1118)
+.||||+|++.+|+ .||+|||.++..... .. . ..
T Consensus 460 ~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 538 (1466)
T PTZ00265 460 SKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMR 538 (1466)
T ss_pred HhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcc
Confidence 88999999999997 499999999742100 00 0 00
Q ss_pred ---HHHHHHHHHHHHHHcCCC-------ccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048718 622 ---KAEKVLVVERVIESLGLQ-------HIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQL 691 (1118)
Q Consensus 622 ---~~~~~~~v~~lL~~lgL~-------~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~ 691 (1118)
.....+.+.++++.+++. +..||.+|+ .+..|||||||||+|||||+++|+||||||||++||+.++..
T Consensus 539 ~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~-~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~ 617 (1466)
T PTZ00265 539 KNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGS-NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYL 617 (1466)
T ss_pred cccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHH
Confidence 001123466666666654 345777775 456799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEecC
Q 048718 692 LLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAKG 730 (1118)
Q Consensus 692 i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~G 730 (1118)
+.+.|+++.+ +|+|+|+++|+++. + +.+|++++|.+|
T Consensus 618 i~~~L~~~~~~~g~TvIiIsHrls~-i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 618 VQKTINNLKGNENRITIIIAHRLST-I-RYANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHHhhcCCCEEEEEeCCHHH-H-HhCCEEEEEeCC
Confidence 9999999875 58999999999874 3 789999999873
No 325
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=6.1e-34 Score=316.95 Aligned_cols=202 Identities=21% Similarity=0.368 Sum_probs=161.7
Q ss_pred ceEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeE
Q 048718 510 TIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRII 589 (1118)
Q Consensus 510 ~~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~I 589 (1118)
...|+++|+++. .+.+|+|+||+|++||+++|+|||||||||||++|+|+++ +.+|+|.++| .|
T Consensus 37 ~~~l~i~nls~~----~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~--p~~G~I~i~g----------~i 100 (282)
T cd03291 37 DNNLFFSNLCLV----GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE--PSEGKIKHSG----------RI 100 (282)
T ss_pred CCeEEEEEEEEe----cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECC----------EE
Confidence 346899999984 2569999999999999999999999999999999999998 6899999988 38
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCccCCCCCHHHHHHH
Q 048718 590 GFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIR-------DSLVGTVEKRGISGGQRKRV 662 (1118)
Q Consensus 590 gyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~-------dt~vg~~~~rgLSGGERQRV 662 (1118)
+|++|++.+++. ||+||+.+.... ... .+.++++.++|.+.. ++.++. .++.|||||||||
T Consensus 101 ~yv~q~~~l~~~-tv~enl~~~~~~------~~~----~~~~~l~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~qrv 168 (282)
T cd03291 101 SFSSQFSWIMPG-TIKENIIFGVSY------DEY----RYKSVVKACQLEEDITKFPEKDNTVLGE-GGITLSGGQRARI 168 (282)
T ss_pred EEEeCccccccc-CHHHHhhccccc------CHH----HHHHHHHHhCCHHHHHhccccccceecC-CCCcCCHHHHHHH
Confidence 999999988875 999999875321 111 122333444443222 222221 2356999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhh
Q 048718 663 NVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRAL-RREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKK 741 (1118)
Q Consensus 663 sIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~L-r~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~ 741 (1118)
+||++|+.+|++|||||||+|||+.++..+.+.+ +.+. ++.|||+++|++.. + ..+|++++|.+ |++++.|++++
T Consensus 169 ~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~-~-~~~d~i~~l~~-G~i~~~g~~~~ 244 (282)
T cd03291 169 SLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHE-GSSYFYGTFSE 244 (282)
T ss_pred HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHH-H-HhCCEEEEEEC-CEEEEECCHHH
Confidence 9999999999999999999999999999999865 4443 57899999999875 3 57999999976 68999999877
Q ss_pred HH
Q 048718 742 VE 743 (1118)
Q Consensus 742 l~ 743 (1118)
+.
T Consensus 245 ~~ 246 (282)
T cd03291 245 LQ 246 (282)
T ss_pred HH
Confidence 64
No 326
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=2.6e-34 Score=347.21 Aligned_cols=208 Identities=20% Similarity=0.320 Sum_probs=171.4
Q ss_pred eEEEEEeEEEEEcCC---cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hh
Q 048718 511 IEVAFKDLTITLKGK---NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QS 584 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~---~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~ 584 (1118)
..++++||+++|++. ++++|+|+|+++++||+++|+||||||||||+++|+|+++ |++|+|.+||.++.. ..
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~--p~~G~i~~~g~~i~~~~~~~ 413 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI--PQEGEILLDGAAVSADSRDD 413 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHH
Confidence 469999999999642 2369999999999999999999999999999999999998 689999999988643 45
Q ss_pred hcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccC-ccCCCCCHHHHHHHH
Q 048718 585 YKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGT-VEKRGISGGQRKRVN 663 (1118)
Q Consensus 585 ~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~-~~~rgLSGGERQRVs 663 (1118)
+++.++||+|++.+|.. |+++|+. + . ..++.+.++++.+++.+..+..++. .....||||||||++
T Consensus 414 ~~~~i~~v~q~~~lf~~-ti~~n~~-------~-~----~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRla 480 (555)
T TIGR01194 414 YRDLFSAIFADFHLFDD-LIGPDEG-------E-H----ASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLA 480 (555)
T ss_pred HHhhCcEEccChhhhhh-hhhcccc-------c-c----hhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHH
Confidence 78889999999998865 8888841 1 1 1223467889999987765443321 123569999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEe
Q 048718 664 VGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALR-REALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYH 736 (1118)
Q Consensus 664 IArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr-~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~ 736 (1118)
|||||+.+|+||||||||++||+.++.++.+.+. .+...|+|+|+++|+++. .+.+|++++|++ |++++.
T Consensus 481 laRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~--~~~~d~i~~l~~-G~i~~~ 551 (555)
T TIGR01194 481 LICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQY--FELADQIIKLAA-GCIVKD 551 (555)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHH--HHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999998764 455568999999999863 478999999976 577653
No 327
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-34 Score=344.46 Aligned_cols=202 Identities=25% Similarity=0.357 Sum_probs=171.8
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEE
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIG 590 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 590 (1118)
..++++||++.|. ++.+|+|+||+|++||+++|+|||||||||||++|+|+.+ |++|+|.++|. +.+|
T Consensus 318 ~~l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~--------~~i~ 385 (530)
T PRK15064 318 NALEVENLTKGFD--NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN--------ANIG 385 (530)
T ss_pred ceEEEEeeEEeeC--CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--------eEEE
Confidence 3689999999994 3579999999999999999999999999999999999987 68999999873 4699
Q ss_pred EEcCCCC--CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHHHHHHH
Q 048718 591 FVPQDDI--VHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-HIRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 591 yV~Qd~~--l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-~~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
|++|++. +++.+||.|++.+... . . ..+..++++++.+|+. +..++.+++ |||||||||+||++
T Consensus 386 ~~~q~~~~~~~~~~t~~~~~~~~~~---~-~----~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGq~qrv~la~a 452 (530)
T PRK15064 386 YYAQDHAYDFENDLTLFDWMSQWRQ---E-G----DDEQAVRGTLGRLLFSQDDIKKSVKV-----LSGGEKGRMLFGKL 452 (530)
T ss_pred EEcccccccCCCCCcHHHHHHHhcc---C-C----ccHHHHHHHHHHcCCChhHhcCcccc-----cCHHHHHHHHHHHH
Confidence 9999864 5567999999865211 1 1 1123578899999994 667887776 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEE-EecChhhH
Q 048718 668 MVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIV-YHGPVKKV 742 (1118)
Q Consensus 668 Ll~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv-~~G~~~~l 742 (1118)
|+.+|+||||||||+|||+.++..+.+.|+++ +.|||++|||++. +.+.+|++++|.+ |+++ +.|+++++
T Consensus 453 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~-~~~~~d~i~~l~~-g~i~~~~g~~~~~ 523 (530)
T PRK15064 453 MMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDREF-VSSLATRIIEITP-DGVVDFSGTYEEY 523 (530)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHHH-HHHhCCEEEEEEC-CeEEEcCCCHHHH
Confidence 99999999999999999999999999999876 4599999999875 4578999999986 5676 88887654
No 328
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=5.3e-34 Score=304.92 Aligned_cols=195 Identities=16% Similarity=0.169 Sum_probs=160.5
Q ss_pred eeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEE-ECCEecChhhhcCeEEEEcCCCCCCCCCCHHH
Q 048718 528 HLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTIL-VNGKVASIQSYKRIIGFVPQDDIVHGNLTVEE 606 (1118)
Q Consensus 528 ~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~-inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~E 606 (1118)
.+|+||||+|++||+++|+||||||||||+|+|+|+++ +++|+|. ++|... .+.+++.+++.+||+|
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--~~sG~i~~~~~~~~----------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA--PDEGDFIGLRGDAL----------PLGANSFILPGLTGEE 68 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCCCEEEecCcee----------ccccccccCCcCcHHH
Confidence 37999999999999999999999999999999999997 6899997 777532 1234566888999999
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048718 607 NLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDS 686 (1118)
Q Consensus 607 nL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~ 686 (1118)
|+.+....+ .....+. .+.+.+.++|....++.+++ |||||||||+||+||+.+|+++||||||++||+
T Consensus 69 nl~~~~~~~---~~~~~~~---~~~~~~~~~l~~~~~~~~~~-----lS~G~~qrv~la~al~~~p~llllDEP~~~lD~ 137 (213)
T PRK15177 69 NARMMASLY---GLDGDEF---SHFCYQLTQLEQCYTDRVSE-----YSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN 137 (213)
T ss_pred HHHHHHHHc---CCCHHHH---HHHHHHHhChhHHhhchHhh-----cCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 999876543 1222221 23444567888777877766 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHHHHHHh
Q 048718 687 SSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVEEYFAS 748 (1118)
Q Consensus 687 ~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~~yf~~ 748 (1118)
.++..+.+.|.+..+ +.|+|+++|+++. +.+++|++++|.+ |++++.|+.++.+.++..
T Consensus 138 ~~~~~~~~~l~~~~~-~~~ii~vsH~~~~-~~~~~d~i~~l~~-G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 138 ATQLRMQAALACQLQ-QKGLIVLTHNPRL-IKEHCHAFGVLLH-GKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHHHHhh-CCcEEEEECCHHH-HHHhcCeeEEEEC-CeEEEeCCHHHHHHHHHH
Confidence 999999998865443 4689999999975 4578999999976 689999999998877654
No 329
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=6.1e-34 Score=344.06 Aligned_cols=205 Identities=22% Similarity=0.371 Sum_probs=171.3
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEE
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIG 590 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 590 (1118)
..++++||++.|. ++.+|+||||+|++||+++|+|||||||||||++|+|+++ |++|+|.+++. ..||
T Consensus 323 ~~l~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~--------~~i~ 390 (556)
T PRK11819 323 KVIEAENLSKSFG--DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGET--------VKLA 390 (556)
T ss_pred eEEEEEeEEEEEC--CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--------eEEE
Confidence 3599999999994 4679999999999999999999999999999999999997 68999999542 1599
Q ss_pred EEcCCC-CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHHHH
Q 048718 591 FVPQDD-IVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH-IRDSLVGTVEKRGISGGQRKRVNVGLEM 668 (1118)
Q Consensus 591 yV~Qd~-~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~-~~dt~vg~~~~rgLSGGERQRVsIArAL 668 (1118)
|++|++ .+++.+||.||+.++..... .... ...+..+++.+||.+ ..++.+++ |||||||||+||++|
T Consensus 391 ~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~~~-----LSgG~~qrv~la~al 460 (556)
T PRK11819 391 YVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKKVGV-----LSGGERNRLHLAKTL 460 (556)
T ss_pred EEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCchhh-----CCHHHHHHHHHHHHH
Confidence 999996 67888999999998753211 1111 123457899999964 46777766 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEE-EecChhh
Q 048718 669 VMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIV-YHGPVKK 741 (1118)
Q Consensus 669 l~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv-~~G~~~~ 741 (1118)
+.+|+||||||||+|||+.++..+.+.|+++ .| |||++||+++. +.+++|++++|.++|+++ +.|+.++
T Consensus 461 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~-tvi~vtHd~~~-~~~~~d~i~~l~~~g~~~~~~g~~~~ 530 (556)
T PRK11819 461 KQGGNVLLLDEPTNDLDVETLRALEEALLEF--PG-CAVVISHDRWF-LDRIATHILAFEGDSQVEWFEGNFQE 530 (556)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CC-eEEEEECCHHH-HHHhCCEEEEEECCCeEEEecCCHHH
Confidence 9999999999999999999999999999876 24 89999999875 557899999998656665 5676554
No 330
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=7.6e-34 Score=342.92 Aligned_cols=205 Identities=26% Similarity=0.385 Sum_probs=171.0
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEE
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIG 590 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 590 (1118)
..++++||++.|. ++.+|+||||+|++||+++|+|||||||||||++|+|+.+ |++|+|.+++. ..||
T Consensus 321 ~~l~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~~--------~~i~ 388 (552)
T TIGR03719 321 KVIEAENLSKGFG--DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGET--------VKLA 388 (552)
T ss_pred eEEEEeeEEEEEC--CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECCc--------eEEE
Confidence 3589999999994 4679999999999999999999999999999999999997 68999999542 1599
Q ss_pred EEcCCC-CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHHHH
Q 048718 591 FVPQDD-IVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH-IRDSLVGTVEKRGISGGQRKRVNVGLEM 668 (1118)
Q Consensus 591 yV~Qd~-~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~-~~dt~vg~~~~rgLSGGERQRVsIArAL 668 (1118)
|++|++ .+++.+||.||+.++.... ..... ...++++++.+||.+ ..++.+++ |||||||||+||++|
T Consensus 389 ~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGe~qrv~la~al 458 (552)
T TIGR03719 389 YVDQSRDALDPNKTVWEEISGGLDII---QLGKR--EVPSRAYVGRFNFKGSDQQKKVGQ-----LSGGERNRVHLAKTL 458 (552)
T ss_pred EEeCCccccCCCCcHHHHHHhhcccc---ccCcc--hHHHHHHHHhCCCChhHhcCchhh-----CCHHHHHHHHHHHHH
Confidence 999996 4788899999999875321 11111 123557899999964 46777766 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEE-EecChhh
Q 048718 669 VMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIV-YHGPVKK 741 (1118)
Q Consensus 669 l~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv-~~G~~~~ 741 (1118)
+.+|+||||||||+|||+.++..+.+.|+++. + |||++|||++. +.+++|++++|.+||+++ +.|+.++
T Consensus 459 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~~-~~~~~d~i~~l~~~~~~~~~~g~~~~ 528 (552)
T TIGR03719 459 KSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRWF-LDRIATHILAFEGDSHVEWFEGNYSE 528 (552)
T ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHHH-HHHhCCEEEEEECCCeEEEeCCCHHH
Confidence 99999999999999999999999999998872 4 89999999875 457899999997656765 5666543
No 331
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=6.2e-34 Score=375.12 Aligned_cols=214 Identities=19% Similarity=0.341 Sum_probs=183.8
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcC
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKR 587 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 587 (1118)
..|+|+||+++|..+.+.+|+||||+|++||.+||+|+||||||||+++|.|+++ .+|+|+|||.+++ ...+|+
T Consensus 1216 g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~di~~i~~~~lR~ 1292 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVSWNSVTLQTWRK 1292 (1490)
T ss_pred CeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEcccCCHHHHHh
Confidence 4699999999997555789999999999999999999999999999999999985 5899999999874 356899
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCCCHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-------HIRDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-------~~~dt~vg~~~~rgLSGGERQ 660 (1118)
.|+||||++.+|+. ||+|||.... ..+++ .+.++++..+|. +..|+.+++ ....|||||||
T Consensus 1293 ~is~IpQdp~LF~G-TIR~NLdp~~------~~tde----ei~~aL~~~~L~~~i~~lp~GLdt~v~e-~G~nLSgGQrQ 1360 (1490)
T TIGR01271 1293 AFGVIPQKVFIFSG-TFRKNLDPYE------QWSDE----EIWKVAEEVGLKSVIEQFPDKLDFVLVD-GGYVLSNGHKQ 1360 (1490)
T ss_pred ceEEEeCCCccCcc-CHHHHhCccc------CCCHH----HHHHHHHHCCCHHHHHhCcccccccccc-CCCcCCHHHHH
Confidence 99999999999976 9999996421 12222 356677777663 346778875 45569999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
|++|||||+++|+||||||||++||+.+...|.+.|++.. .++|||+|+|+++. ...+|+|++|++ |++++.|+++
T Consensus 1361 rL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~t--i~~~DrIlvL~~-G~ivE~g~p~ 1436 (1490)
T TIGR01271 1361 LMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVEA--LLECQQFLVIEG-SSVKQYDSIQ 1436 (1490)
T ss_pred HHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999999999999999998764 47999999999864 357999999976 6999999998
Q ss_pred hHH
Q 048718 741 KVE 743 (1118)
Q Consensus 741 ~l~ 743 (1118)
++.
T Consensus 1437 ~Ll 1439 (1490)
T TIGR01271 1437 KLL 1439 (1490)
T ss_pred HHH
Confidence 875
No 332
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=8.6e-34 Score=343.92 Aligned_cols=198 Identities=28% Similarity=0.343 Sum_probs=171.9
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEE
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIG 590 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 590 (1118)
..++++|+++.|.+ ..|+++||+|++||+++|+||||||||||||+|+|+++ |++|+|.++ ..++
T Consensus 339 ~~l~~~~ls~~~~~---~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~----------~~i~ 403 (590)
T PRK13409 339 TLVEYPDLTKKLGD---FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE----------LKIS 403 (590)
T ss_pred eEEEEcceEEEECC---EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe----------eeEE
Confidence 45899999999942 35999999999999999999999999999999999998 689999885 1489
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
|++|+..+++.+||+||+.+..... .. ...++++++.+||.+..++.+++ |||||||||+||++|+.
T Consensus 404 y~~Q~~~~~~~~tv~e~l~~~~~~~-----~~---~~~~~~~L~~l~l~~~~~~~~~~-----LSGGe~QRvaiAraL~~ 470 (590)
T PRK13409 404 YKPQYIKPDYDGTVEDLLRSITDDL-----GS---SYYKSEIIKPLQLERLLDKNVKD-----LSGGELQRVAIAACLSR 470 (590)
T ss_pred EecccccCCCCCcHHHHHHHHhhhc-----Ch---HHHHHHHHHHCCCHHHHhCCccc-----CCHHHHHHHHHHHHHhc
Confidence 9999988888999999998753211 11 12467899999999888888876 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecCh
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPV 739 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~ 739 (1118)
+|+||||||||+|||+.++..+.+.|++++++ |.|||++|||+.. +..++|++++|. | ++...|..
T Consensus 471 ~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~-~~~~aDrvivl~-~-~~~~~g~~ 537 (590)
T PRK13409 471 DADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYM-IDYISDRLMVFE-G-EPGKHGHA 537 (590)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEc-C-cceeeeec
Confidence 99999999999999999999999999999864 8999999999876 457899999994 3 67766664
No 333
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-34 Score=305.43 Aligned_cols=217 Identities=29% Similarity=0.455 Sum_probs=183.6
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---h-hhhc
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---I-QSYK 586 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~-~~~r 586 (1118)
..|+++|+++.| ++++||+|+|.+|++||..+|+|||||||||||++|+|..+ |.+|.+.+.|+... . .++|
T Consensus 30 ~li~l~~v~v~r--~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~--pssg~~~~~G~~~G~~~~~~elr 105 (257)
T COG1119 30 PLIELKNVSVRR--NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP--PSSGDVTLLGRRFGKGETIFELR 105 (257)
T ss_pred ceEEecceEEEE--CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC--CCCCceeeeeeeccCCcchHHHH
Confidence 468999999999 45889999999999999999999999999999999999998 56999999998652 2 5689
Q ss_pred CeEEEEcCC--CCCCCCCCHHHHHHHHHh--hccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 048718 587 RIIGFVPQD--DIVHGNLTVEENLWFSAR--CRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRV 662 (1118)
Q Consensus 587 ~~IgyV~Qd--~~l~~~LTV~EnL~f~a~--lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRV 662 (1118)
+.||||.-. ..+.+..+|+|-+.-+.. .........++..+++..+++.+|+.+..|++.++ ||-||||||
T Consensus 106 k~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~-----LS~Ge~rrv 180 (257)
T COG1119 106 KRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGS-----LSQGEQRRV 180 (257)
T ss_pred HHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhh-----cCHhHHHHH
Confidence 999999742 344556788887754332 11112123345567899999999999999999987 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecC
Q 048718 663 NVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE--GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGP 738 (1118)
Q Consensus 663 sIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~--G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~ 738 (1118)
-|||||+.+|++||||||++|||...+..+++.|.+++.. +.++|+|||+.++ +-..++++++|.+ |+++++|-
T Consensus 181 LiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eE-i~~~~th~lll~~-g~v~~~g~ 256 (257)
T COG1119 181 LIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEE-IPPCFTHRLLLKE-GEVVAQGK 256 (257)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhh-cccccceEEEeeC-Cceeeccc
Confidence 9999999999999999999999999999999999999854 8899999999876 5688999999976 68888773
No 334
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.4e-33 Score=312.90 Aligned_cols=226 Identities=25% Similarity=0.411 Sum_probs=191.6
Q ss_pred eEEEEEeEEEEEc--CCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CceeEEEECCEec---Ch
Q 048718 511 IEVAFKDLTITLK--GKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC---IMSGTILVNGKVA---SI 582 (1118)
Q Consensus 511 ~~l~~knLs~~~~--~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~---~~ 582 (1118)
..+.++||++.+. ++...++++|||+|++||.+||+|.||||||-..+.|+|+++.. .-+|+|.|+|.++ +.
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 3578999999885 33468999999999999999999999999999999999999741 2489999999875 22
Q ss_pred hhh---c-CeEEEEcCCCC--CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 048718 583 QSY---K-RIIGFVPQDDI--VHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISG 656 (1118)
Q Consensus 583 ~~~---r-~~IgyV~Qd~~--l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSG 656 (1118)
..+ | .+|+++||+|. |-|-.|+...|.-..+++ .++.+.+.++++-++|+.+|+.+-..+. +.++++|||
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl--~~yPHeLSG 160 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRL--DAYPHELSG 160 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhh--hhCCcccCc
Confidence 333 3 36999999984 556679999888876654 5667778888999999999997644332 236677999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEE
Q 048718 657 GQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVY 735 (1118)
Q Consensus 657 GERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~ 735 (1118)
||||||.||+||+.+|++||.||||++||...+.+|+++|++|.++ |..+++||||+.. +.+++|+|.||.+ |++++
T Consensus 161 GqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~i-Vr~~ADrV~VM~~-G~ivE 238 (534)
T COG4172 161 GQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGI-VRKFADRVYVMQH-GEIVE 238 (534)
T ss_pred chhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHH-HHHhhhhEEEEec-cEEee
Confidence 9999999999999999999999999999999999999999999865 9999999999985 5689999999986 69999
Q ss_pred ecChhhH
Q 048718 736 HGPVKKV 742 (1118)
Q Consensus 736 ~G~~~~l 742 (1118)
.|..+++
T Consensus 239 ~~~t~~l 245 (534)
T COG4172 239 TGTTETL 245 (534)
T ss_pred cCcHHHH
Confidence 9998776
No 335
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-33 Score=305.71 Aligned_cols=187 Identities=27% Similarity=0.372 Sum_probs=163.0
Q ss_pred eEEEEEeEEEEEcCCc-------ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChh
Q 048718 511 IEVAFKDLTITLKGKN-------KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQ 583 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~-------k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~ 583 (1118)
..++++||++.|..+. ..+++||||+|++||+++|+|+||||||||-|+|.|+++ |++|+|+++|+++...
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~--pt~G~i~f~g~~i~~~ 80 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE--PTSGEILFEGKDITKL 80 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC--CCCceEEEcCcchhhc
Confidence 3578899999886321 379999999999999999999999999999999999998 7999999999874321
Q ss_pred hhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHH
Q 048718 584 SYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH-IRDSLVGTVEKRGISGGQRKRV 662 (1118)
Q Consensus 584 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~-~~dt~vg~~~~rgLSGGERQRV 662 (1118)
. +.+..+++.++|+.+||.. .+++++. +|||||||||
T Consensus 81 --~-----------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPh-----elSGGQrQRi 118 (268)
T COG4608 81 --S-----------------------------------KEERRERVLELLEKVGLPEEFLYRYPH-----ELSGGQRQRI 118 (268)
T ss_pred --c-----------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCc-----ccCchhhhhH
Confidence 1 2334567899999999864 5666665 4999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhh
Q 048718 663 NVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKK 741 (1118)
Q Consensus 663 sIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~ 741 (1118)
+|||||+.+|+++++|||||+||...+.+++++|+++.++ |.|.++++||.+. +..++|++.||.. |++|+.|+.++
T Consensus 119 ~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~v-v~~isdri~VMy~-G~iVE~g~~~~ 196 (268)
T COG4608 119 GIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSV-VRYISDRIAVMYL-GKIVEIGPTEE 196 (268)
T ss_pred HHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHh-hhhhcccEEEEec-CceeEecCHHH
Confidence 9999999999999999999999999999999999999865 9999999999985 5689999999987 69999999988
Q ss_pred HH
Q 048718 742 VE 743 (1118)
Q Consensus 742 l~ 743 (1118)
+.
T Consensus 197 ~~ 198 (268)
T COG4608 197 VF 198 (268)
T ss_pred Hh
Confidence 73
No 336
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.8e-34 Score=305.44 Aligned_cols=207 Identities=26% Similarity=0.385 Sum_probs=181.2
Q ss_pred eeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC--hhhhcCeEEEEc-CCCCCCCCCCH
Q 048718 528 HLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS--IQSYKRIIGFVP-QDDIVHGNLTV 604 (1118)
Q Consensus 528 ~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~--~~~~r~~IgyV~-Qd~~l~~~LTV 604 (1118)
.+++||||+|++|++++++|+|||||||+||+|+|++. |++|.|.++|.+.- .+.+-+.+++|+ |.-.+...+-+
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~--p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL--PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPA 115 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc--cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechh
Confidence 58999999999999999999999999999999999998 68999999997642 234556788876 55566667778
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 048718 605 EENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGL 684 (1118)
Q Consensus 605 ~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGL 684 (1118)
.|.+......+ +++..+-+++.+.+.+.|+|+...+.++.. ||-|||.|+.||.+|+++|+||||||||-||
T Consensus 116 ~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~-----LSlGqRmraeLaaaLLh~p~VLfLDEpTvgL 187 (325)
T COG4586 116 LDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPVRK-----LSLGQRMRAELAAALLHPPKVLFLDEPTVGL 187 (325)
T ss_pred hhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhhhh-----ccchHHHHHHHHHHhcCCCcEEEecCCccCc
Confidence 88887655443 567778888999999999999888888754 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHHHHH
Q 048718 685 DSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVEEYF 746 (1118)
Q Consensus 685 D~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~~yf 746 (1118)
|..++..|.+.|++..+ ++.||+++||+.+. +.++||+|++|+. |+++|.|+.+++.+-|
T Consensus 188 DV~aq~~ir~Flke~n~~~~aTVllTTH~~~d-i~~lc~rv~~I~~-Gqlv~dg~l~~l~~~f 248 (325)
T COG4586 188 DVNAQANIREFLKEYNEERQATVLLTTHIFDD-IATLCDRVLLIDQ-GQLVFDGTLAQLQEQF 248 (325)
T ss_pred chhHHHHHHHHHHHHHHhhCceEEEEecchhh-HHHhhhheEEeeC-CcEeecccHHHHHHHh
Confidence 99999999999999985 59999999999985 6799999999986 6999999999887655
No 337
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=8.5e-34 Score=292.07 Aligned_cols=221 Identities=25% Similarity=0.436 Sum_probs=191.8
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECC-EecCh----hhh
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNG-KVASI----QSY 585 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG-~~~~~----~~~ 585 (1118)
..+.++||++++. +-.+|+++||+|.+||+-+|||||||||||+|.+|+|..+ |++|+|+++| .++.. ...
T Consensus 4 ~iL~~~~vsVsF~--GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr--p~~G~v~f~g~~dl~~~~e~~IA 79 (249)
T COG4674 4 IILYLDGVSVSFG--GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR--PQEGEVLFDGDTDLTKLPEHRIA 79 (249)
T ss_pred ceEEEeceEEEEc--ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC--CCcceEEEcCchhhccCCHHHHH
Confidence 4578999999994 4789999999999999999999999999999999999998 6899999999 55432 234
Q ss_pred cCeEEEEcCCCCCCCCCCHHHHHHHHHhhccC-----CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 048718 586 KRIIGFVPQDDIVHGNLTVEENLWFSARCRLS-----ADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 586 r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~-----~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQ 660 (1118)
|..||--||.|..|..+||+|||.++.....+ ......+.+.+++++|+..||.+.++...+. ||-||||
T Consensus 80 r~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~-----LSHGqKQ 154 (249)
T COG4674 80 RAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAAL-----LSHGQKQ 154 (249)
T ss_pred HhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhh-----hccchhh
Confidence 66799999999999999999999998653211 0112233456899999999999999998887 9999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
++.|++-|+.+|++|+||||++|+--.......++|+.++. +.+|+++.||+.+ +.+++++|.||.+ |.+...|+.+
T Consensus 155 wLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~F-vr~~A~~VTVlh~-G~VL~EGsld 231 (249)
T COG4674 155 WLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMGF-VREIADKVTVLHE-GSVLAEGSLD 231 (249)
T ss_pred hhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHHH-HHHhhheeEEEec-cceeecccHH
Confidence 99999999999999999999999999999999999999875 5799999999987 5689999999987 5899999998
Q ss_pred hHH
Q 048718 741 KVE 743 (1118)
Q Consensus 741 ~l~ 743 (1118)
++.
T Consensus 232 ~v~ 234 (249)
T COG4674 232 EVQ 234 (249)
T ss_pred Hhh
Confidence 874
No 338
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.3e-33 Score=308.22 Aligned_cols=200 Identities=22% Similarity=0.260 Sum_probs=164.5
Q ss_pred eEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEE-----------ECCEecCh--h
Q 048718 517 DLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTIL-----------VNGKVASI--Q 583 (1118)
Q Consensus 517 nLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~-----------inG~~~~~--~ 583 (1118)
+|+++|+ .++.+|+|+| .+++||+++|+||||||||||||+|+|+++ +++|+|. ++|.++.. .
T Consensus 5 ~~~~~y~-~~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~--p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 5 EPVHRYG-PNSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLK--PNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred Ccceeec-CcchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEeeccccchhhhhccCchhhhhhH
Confidence 5788884 2346999999 599999999999999999999999999998 6899996 77876532 1
Q ss_pred h-hc--CeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 048718 584 S-YK--RIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 584 ~-~r--~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQ 660 (1118)
. .+ ..++|++|+..+++. ++.+++.+... ....+..+.++++.+||.+..++.+.+ |||||||
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l~--------~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~q 146 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPK-AVKGKVGELLK--------KKDERGKLDELVDQLELRHVLDRNIDQ-----LSGGELQ 146 (255)
T ss_pred HhhhcccceeeecchhccCch-HHHHHHHHHhc--------hhHHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHH
Confidence 1 11 247999999888874 88888876531 112334678999999998877777665 9999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEec
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHG 737 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G 737 (1118)
||+||++|+.+|++++|||||++||+.++..+.+.|++++++|+|||+++|+++. +.+++|++++|. | ++++.|
T Consensus 147 rv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~-~~~~ad~i~~l~-~-~~~~~~ 220 (255)
T cd03236 147 RVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAV-LDYLSDYIHCLY-G-EPGAYG 220 (255)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH-HHHhCCEEEEEC-C-CCCcce
Confidence 9999999999999999999999999999999999999998778999999999875 456899999994 3 455433
No 339
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-34 Score=318.45 Aligned_cols=222 Identities=29% Similarity=0.441 Sum_probs=185.4
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcC
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKR 587 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 587 (1118)
..+.|.+++|.|. ..+++|+++||.+++|+.+||+|+||+||||++++|-.+++ +.+|.|.+||+++. ...+|+
T Consensus 261 g~v~F~~V~F~y~-~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD--~~sG~I~id~qdir~vtq~slR~ 337 (497)
T COG5265 261 GAVAFINVSFAYD-PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD--VNSGSITIDGQDIRDVTQQSLRR 337 (497)
T ss_pred ceEEEEEEEeecc-ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC--CcCceEEEcchhHHHhHHHHHHH
Confidence 4589999999996 56899999999999999999999999999999999999998 68999999998864 356889
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
.||.||||..||. -|...|+.|+.......++....+.+.++.+++. |.+..++.||+.+ -.|||||||||+|||+
T Consensus 338 aIg~VPQDtvLFN-Dti~yni~ygr~~at~eev~aaa~~aqi~~fi~~--lP~gy~t~Vgerg-lklSggekqrvaiar~ 413 (497)
T COG5265 338 AIGIVPQDTVLFN-DTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQS--LPEGYDTGVGERG-LKLSGGEKQRVAIART 413 (497)
T ss_pred HhCcCcccceehh-hhHHHHHhccCccccHHHHHHHHHHhhhhHHHHh--Cchhhhcccchhe-eeccCchHHHHHHHHH
Confidence 9999999999995 4999999997532211111112223334455553 4778899999721 2389999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 668 MVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 668 Ll~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
++++|+||+|||.||+||..+.+++...|++.. .|+|.+++.|.++.. --+|.++||++ |+|++.|.-+++.
T Consensus 414 ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlsti--~~adeiivl~~-g~i~erg~h~~ll 485 (497)
T COG5265 414 ILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLSTI--IDADEIIVLDN-GRIVERGTHEELL 485 (497)
T ss_pred HhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhhc--cCCceEEEeeC-CEEEecCcHHHHH
Confidence 999999999999999999999999999999876 689999999999853 46999999976 6999999987765
No 340
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=7e-33 Score=339.55 Aligned_cols=206 Identities=23% Similarity=0.339 Sum_probs=171.0
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEE
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIG 590 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 590 (1118)
..|+++||++.|. ++.+|+||||+|.+|++++|+|||||||||||++|+|+++ |++|+|.+ |.. -.||
T Consensus 318 ~~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~-------~~i~ 385 (635)
T PRK11147 318 IVFEMENVNYQID--GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTK-------LEVA 385 (635)
T ss_pred ceEEEeeeEEEEC--CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCC-------cEEE
Confidence 3589999999994 4679999999999999999999999999999999999987 68999998 432 1599
Q ss_pred EEcCCC-CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHHHHHHHH
Q 048718 591 FVPQDD-IVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-HIRDSLVGTVEKRGISGGQRKRVNVGLEM 668 (1118)
Q Consensus 591 yV~Qd~-~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-~~~dt~vg~~~~rgLSGGERQRVsIArAL 668 (1118)
|++|+. .+++.+||.||+.++.... .... ....+.++++.+++. +..++++++ |||||||||+||++|
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGekqRl~la~al 455 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEV---MVNG--RPRHVLGYLQDFLFHPKRAMTPVKA-----LSGGERNRLLLARLF 455 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccc---cccc--hHHHHHHHHHhcCCCHHHHhChhhh-----CCHHHHHHHHHHHHH
Confidence 999985 5888999999998754211 0111 123577889999996 467777776 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEe-cCcEEEEecChhhH
Q 048718 669 VMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLA-KGGVIVYHGPVKKV 742 (1118)
Q Consensus 669 l~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~-~GG~iv~~G~~~~l 742 (1118)
+.+|+||||||||+|||+.++..+.+.|+++ +.|||+||||... +..++|++++|. +|....|.|+.++.
T Consensus 456 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~~-~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 456 LKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQF-VDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHHH-HHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 9999999999999999999999999988775 4599999999875 467899999997 55444567776654
No 341
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-32 Score=337.52 Aligned_cols=202 Identities=25% Similarity=0.387 Sum_probs=170.0
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEE
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIG 590 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 590 (1118)
..|+++||++.|+ ++.+|+|+||+|.+||+++|+||||||||||||+|+|+.+ |++|+|.+++. ..+|
T Consensus 311 ~~l~~~~l~~~y~--~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~--------~~ig 378 (638)
T PRK10636 311 PLLKMEKVSAGYG--DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG--------IKLG 378 (638)
T ss_pred ceEEEEeeEEEeC--CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC--------EEEE
Confidence 3589999999994 4679999999999999999999999999999999999997 68999999742 2599
Q ss_pred EEcCCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHHHHHHH
Q 048718 591 FVPQDD--IVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-HIRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 591 yV~Qd~--~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-~~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
|++|+. .+.+..||.+++... . + ......+.++|+.+++. +..++++++ |||||||||+||++
T Consensus 379 y~~Q~~~~~l~~~~~~~~~~~~~---~-~-----~~~~~~~~~~L~~~~l~~~~~~~~~~~-----LSgGekqRl~La~~ 444 (638)
T PRK10636 379 YFAQHQLEFLRADESPLQHLARL---A-P-----QELEQKLRDYLGGFGFQGDKVTEETRR-----FSGGEKARLVLALI 444 (638)
T ss_pred EecCcchhhCCccchHHHHHHHh---C-c-----hhhHHHHHHHHHHcCCChhHhcCchhh-----CCHHHHHHHHHHHH
Confidence 999974 345667888776421 1 1 11234578899999996 467788776 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEE-EecChhhHH
Q 048718 668 MVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIV-YHGPVKKVE 743 (1118)
Q Consensus 668 Ll~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv-~~G~~~~l~ 743 (1118)
|+.+|+||||||||+|||+.++..+.+.|+++ .| |||+||||... +.+++|++++|.+ |+++ +.|+.++..
T Consensus 445 l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~~-~~~~~d~i~~l~~-G~i~~~~g~~~~~~ 516 (638)
T PRK10636 445 VWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRHL-LRSTTDDLYLVHD-GKVEPFDGDLEDYQ 516 (638)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEcCCCHHHHH
Confidence 99999999999999999999999999999886 34 99999999875 5688999999976 5776 889987754
No 342
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.5e-33 Score=289.52 Aligned_cols=214 Identities=27% Similarity=0.407 Sum_probs=174.2
Q ss_pred EEEeEEEEEcC---CcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChh---hhcC
Q 048718 514 AFKDLTITLKG---KNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQ---SYKR 587 (1118)
Q Consensus 514 ~~knLs~~~~~---~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~---~~r~ 587 (1118)
.++|+.+.+.. ..+++|+++|++|..|+++.|+|.||||||||+++|+|-+. +++|+|.|+|.+++.. +...
T Consensus 3 ~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~--~t~G~I~Idg~dVtk~~~~~RA~ 80 (263)
T COG1101 3 SLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK--PTSGQILIDGVDVTKKSVAKRAN 80 (263)
T ss_pred ccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc--cCCceEEECceecccCCHHHHhh
Confidence 34555555532 24789999999999999999999999999999999999998 7999999999987542 2234
Q ss_pred eEEEEcCCCC--CCCCCCHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHHc--CCCccccccccCccCCCCCHHHHH
Q 048718 588 IIGFVPQDDI--VHGNLTVEENLWFSARCRLSADLPK---AEKVLVVERVIESL--GLQHIRDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 588 ~IgyV~Qd~~--l~~~LTV~EnL~f~a~lr~~~~~~~---~~~~~~v~~lL~~l--gL~~~~dt~vg~~~~rgLSGGERQ 660 (1118)
.++-|||||. .++.|||+||+.++......++... ...+....+-++.+ ||++..++++|- |||||||
T Consensus 81 ~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~igl-----LSGGQRQ 155 (263)
T COG1101 81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGL-----LSGGQRQ 155 (263)
T ss_pred HHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhh-----ccchHHH
Confidence 5888999974 5899999999999864322222222 22333344555554 668888999987 9999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEe
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYH 736 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~ 736 (1118)
-|++++|-++.|+||+|||-|++|||.++..+++.-.++.++ +.|.+||||+++.++ ++-+|.|+|+. |+||.+
T Consensus 156 alsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al-~yG~RlImLh~-G~IvlD 230 (263)
T COG1101 156 ALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDAL-DYGNRLIMLHS-GKIVLD 230 (263)
T ss_pred HHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHH-hhCCeEEEEeC-CeEEEE
Confidence 999999999999999999999999999999999998888754 889999999998765 89999999975 688875
No 343
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=9.6e-33 Score=339.39 Aligned_cols=199 Identities=21% Similarity=0.382 Sum_probs=164.0
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEE
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGF 591 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 591 (1118)
.++++||++.|++ ++++|+|+|++|++||+++|+||||||||||+++|+|+++ +.+|+|.+++ ++.++|
T Consensus 451 ~i~~~nv~~~~~~-~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~--~~~G~i~~~~--------~~~i~~ 519 (659)
T TIGR00954 451 GIKFENIPLVTPN-GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP--VYGGRLTKPA--------KGKLFY 519 (659)
T ss_pred eEEEEeeEEECCC-CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEeecC--------CCcEEE
Confidence 5899999999853 3579999999999999999999999999999999999987 6789998864 467999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhcc--CCCCCHHHHHHHHHHHHHHcCCCcccccccc----CccCCCCCHHHHHHHHHH
Q 048718 592 VPQDDIVHGNLTVEENLWFSARCRL--SADLPKAEKVLVVERVIESLGLQHIRDSLVG----TVEKRGISGGQRKRVNVG 665 (1118)
Q Consensus 592 V~Qd~~l~~~LTV~EnL~f~a~lr~--~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg----~~~~rgLSGGERQRVsIA 665 (1118)
|+|++.+++. ||+||+.++..... ..... .+.++++++.+||.+..++..| ......|||||||||+||
T Consensus 520 v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~----~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iA 594 (659)
T TIGR00954 520 VPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLS----DKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMA 594 (659)
T ss_pred ECCCCCCCCc-CHHHHHhcCCChhhhhccCCC----HHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHH
Confidence 9999998877 99999988642210 01111 2346788999999876554321 012356999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCc
Q 048718 666 LEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGG 731 (1118)
Q Consensus 666 rALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG 731 (1118)
|||+++|++|||||||+|||+.++..+.+.|++ .|+|+|+++|+++. .+.+|++++|+.+|
T Consensus 595 Ral~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~--~~~~d~il~l~~~g 655 (659)
T TIGR00954 595 RLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSL--WKYHEYLLYMDGRG 655 (659)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHH--HHhCCEEEEEeCCC
Confidence 999999999999999999999999999998865 38999999999875 37899999997544
No 344
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-32 Score=331.41 Aligned_cols=207 Identities=23% Similarity=0.353 Sum_probs=163.8
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFV 592 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV 592 (1118)
|.++||+++|+ ++.+|+||||+|.+||+++|+||||||||||||+|+|+++ |++|+|.++|.. .++|+
T Consensus 2 i~i~nls~~~g--~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~--pd~G~I~~~~~~--------~i~~~ 69 (638)
T PRK10636 2 IVFSSLQIRRG--VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS--ADGGSYTFPGNW--------QLAWV 69 (638)
T ss_pred EEEEEEEEEeC--CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCCC--------EEEEE
Confidence 67999999994 4679999999999999999999999999999999999987 689999998741 37888
Q ss_pred cCCCCCCCCCCHHHHHHHHHh-----------------------hcc-CCCCCHHHHHHHHHHHHHHcCCC-cccccccc
Q 048718 593 PQDDIVHGNLTVEENLWFSAR-----------------------CRL-SADLPKAEKVLVVERVIESLGLQ-HIRDSLVG 647 (1118)
Q Consensus 593 ~Qd~~l~~~LTV~EnL~f~a~-----------------------lr~-~~~~~~~~~~~~v~~lL~~lgL~-~~~dt~vg 647 (1118)
+|+...+ ..|+.+.+.-... +.. .......+...+++++++.+||. +..++.++
T Consensus 70 ~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~ 148 (638)
T PRK10636 70 NQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVS 148 (638)
T ss_pred ecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchh
Confidence 8865333 2466554431100 000 00000112234688999999997 56788887
Q ss_pred CccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEE
Q 048718 648 TVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILL 727 (1118)
Q Consensus 648 ~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL 727 (1118)
+ |||||||||+||++|+.+|+||||||||++||+.+...+.+.|+++ +.|||+||||... +.+.+|++++|
T Consensus 149 ~-----LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~~-l~~~~d~i~~L 219 (638)
T PRK10636 149 D-----FSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRDF-LDPIVDKIIHI 219 (638)
T ss_pred h-----cCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHHH-HHHhcCEEEEE
Confidence 6 9999999999999999999999999999999999999999988764 5699999999875 56789999999
Q ss_pred ecCcEEE-EecChhhH
Q 048718 728 AKGGVIV-YHGPVKKV 742 (1118)
Q Consensus 728 ~~GG~iv-~~G~~~~l 742 (1118)
.+ |+++ |.|+.+..
T Consensus 220 ~~-G~i~~~~g~~~~~ 234 (638)
T PRK10636 220 EQ-QSLFEYTGNYSSF 234 (638)
T ss_pred eC-CEEEEecCCHHHH
Confidence 86 5664 77877643
No 345
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=8.4e-32 Score=332.36 Aligned_cols=207 Identities=23% Similarity=0.387 Sum_probs=167.8
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEE
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIG 590 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 590 (1118)
..++++||++.|++ ++.+|+|+||+|++||+++|+||||||||||||+|+|+++ |++|+|.+++ +..||
T Consensus 507 ~~L~~~~ls~~y~~-~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~--------~~~ig 575 (718)
T PLN03073 507 PIISFSDASFGYPG-GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSA--------KVRMA 575 (718)
T ss_pred ceEEEEeeEEEeCC-CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECC--------ceeEE
Confidence 46899999999942 3469999999999999999999999999999999999998 6899999875 23699
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHHHHh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH-IRDSLVGTVEKRGISGGQRKRVNVGLEMV 669 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~-~~dt~vg~~~~rgLSGGERQRVsIArALl 669 (1118)
|++|+. +..+++.++..+......+ ... ...+.++++.+||.+ ..++.+++ |||||||||+||++|+
T Consensus 576 yv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~~~~-----LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 576 VFSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQPMYT-----LSGGQKSRVAFAKITF 643 (718)
T ss_pred EEeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCCccc-----cCHHHHHHHHHHHHHh
Confidence 999985 3456676665432211111 111 235788999999974 56777665 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEE-EecChhhHHHH
Q 048718 670 MEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIV-YHGPVKKVEEY 745 (1118)
Q Consensus 670 ~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv-~~G~~~~l~~y 745 (1118)
.+|++|||||||+|||+.++..+++.|+.. .| |||++|||+.. +..++|++++|.+ |+++ +.|+.++.+++
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~~-i~~~~drv~~l~~-G~i~~~~g~~~~~~~~ 715 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEHL-ISGSVDELWVVSE-GKVTPFHGTFHDYKKT 715 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHHH-HHHhCCEEEEEEC-CEEEEeCCCHHHHHHH
Confidence 999999999999999999999998888654 34 99999999875 5678999999976 5777 78888765544
No 346
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.3e-32 Score=359.28 Aligned_cols=205 Identities=24% Similarity=0.435 Sum_probs=170.1
Q ss_pred EEEEEeEEEEEcCC-cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEE
Q 048718 512 EVAFKDLTITLKGK-NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIG 590 (1118)
Q Consensus 512 ~l~~knLs~~~~~~-~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 590 (1118)
.++++|++|+|+.. ++++|+|+|++|++||.++|+||+|||||||+++|.|.++ +.+|.+. .+++.|+
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~--~~~G~i~---------~~~~~Ia 682 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS--HAETSSV---------VIRGSVA 682 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc--ccCCCEE---------EecCcEE
Confidence 58999999999642 3679999999999999999999999999999999999998 5777652 3567899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCCCCCHHHHHHHH
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGL-------QHIRDSLVGTVEKRGISGGQRKRVN 663 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL-------~~~~dt~vg~~~~rgLSGGERQRVs 663 (1118)
||+|++.+|. -||+|||.|+.. ..++ +.+++++..+| .+..+|.+|+ ....|||||||||+
T Consensus 683 yv~Q~p~Lf~-gTIreNI~fg~~------~~~e----~~~~vl~~~~L~~di~~Lp~Gd~T~IGe-~G~~LSGGQkQRIa 750 (1495)
T PLN03232 683 YVPQVSWIFN-ATVRENILFGSD------FESE----RYWRAIDVTALQHDLDLLPGRDLTEIGE-RGVNISGGQKQRVS 750 (1495)
T ss_pred EEcCcccccc-ccHHHHhhcCCc------cCHH----HHHHHHHHhCCHHHHHhCCCCCCceecC-CCcccCHHHHHHHH
Confidence 9999999996 499999999742 1222 34455555444 4456788887 34569999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 664 VGLEMVMEPSLLILDEPTSGLDSSSSQLLLRA-LRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 664 IArALl~~P~lLlLDEPTsGLD~~sa~~i~~~-Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
||||++++|+|+|||||||+||+.++..+++. ++.+ .+|+|+|++||+++. ...+|++++|.+ |++++.|+.+++
T Consensus 751 LARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~~--l~~aD~Ii~L~~-G~i~~~Gt~~eL 826 (1495)
T PLN03232 751 MARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLHF--LPLMDRIILVSE-GMIKEEGTFAEL 826 (1495)
T ss_pred HHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChhh--HHhCCEEEEEeC-CEEEEecCHHHH
Confidence 99999999999999999999999999988765 4443 468999999999874 478999999975 699999998887
Q ss_pred H
Q 048718 743 E 743 (1118)
Q Consensus 743 ~ 743 (1118)
.
T Consensus 827 ~ 827 (1495)
T PLN03232 827 S 827 (1495)
T ss_pred H
Confidence 4
No 347
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=6e-32 Score=272.46 Aligned_cols=143 Identities=29% Similarity=0.495 Sum_probs=130.4
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFV 592 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV 592 (1118)
++++|+++.|. +..+|+++||++++||+++|+||||||||||+++|+|+++ +.+|+|.++|. ..++|+
T Consensus 1 l~~~~l~~~~~--~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~~~--------~~i~~~ 68 (144)
T cd03221 1 IELENLSKTYG--GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE--PDEGIVTWGST--------VKIGYF 68 (144)
T ss_pred CEEEEEEEEEC--CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCe--------EEEEEE
Confidence 36889999994 3479999999999999999999999999999999999998 68999999984 468999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCC
Q 048718 593 PQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEP 672 (1118)
Q Consensus 593 ~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P 672 (1118)
+| ||+||+|||+|||||+.+|
T Consensus 69 ~~-----------------------------------------------------------lS~G~~~rv~laral~~~p 89 (144)
T cd03221 69 EQ-----------------------------------------------------------LSGGEKMRLALAKLLLENP 89 (144)
T ss_pred cc-----------------------------------------------------------CCHHHHHHHHHHHHHhcCC
Confidence 98 9999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecC
Q 048718 673 SLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKG 730 (1118)
Q Consensus 673 ~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~G 730 (1118)
++++|||||+|||+.++..+.+.|+++ +.|+|+++|+++. +.+.+|++++|.+|
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~~-~~~~~d~v~~l~~g 143 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRYF-LDQVATKIIELEDG 143 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHHH-HHHhCCEEEEEeCC
Confidence 999999999999999999999999876 4799999999875 45788999999764
No 348
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.2e-32 Score=359.02 Aligned_cols=204 Identities=25% Similarity=0.457 Sum_probs=170.9
Q ss_pred EEEEEeEEEEEcCC-cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCce-eEEEECCEecChhhhcCeE
Q 048718 512 EVAFKDLTITLKGK-NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMS-GTILVNGKVASIQSYKRII 589 (1118)
Q Consensus 512 ~l~~knLs~~~~~~-~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~s-G~I~inG~~~~~~~~r~~I 589 (1118)
.++++|++++|+.. ++++|+|+|++|++||.++|+||+|||||||+++|.|.++ +.+ |+|.+ ++.|
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~--~~~GG~I~l----------~~~I 681 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP--PRSDASVVI----------RGTV 681 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc--cCCCceEEE----------cCeE
Confidence 58999999999642 3679999999999999999999999999999999999998 678 89974 4579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCCCCCHHHHHHH
Q 048718 590 GFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGL-------QHIRDSLVGTVEKRGISGGQRKRV 662 (1118)
Q Consensus 590 gyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL-------~~~~dt~vg~~~~rgLSGGERQRV 662 (1118)
+||+|++.+|. .||+|||.|+.. ..+ ++.+++++..+| .+..+|.+|+ ....|||||||||
T Consensus 682 ayv~Q~p~Lfn-gTIreNI~fg~~------~d~----e~y~~vl~a~~L~~di~~LP~Gd~T~IGe-~G~~LSGGQKQRI 749 (1622)
T PLN03130 682 AYVPQVSWIFN-ATVRDNILFGSP------FDP----ERYERAIDVTALQHDLDLLPGGDLTEIGE-RGVNISGGQKQRV 749 (1622)
T ss_pred EEEcCccccCC-CCHHHHHhCCCc------ccH----HHHHHHHHHhCcHHHHHhCCCcccccccC-CCCCCCHHHHHHH
Confidence 99999999996 599999999742 111 235556665554 3445788886 3456999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhh
Q 048718 663 NVGLEMVMEPSLLILDEPTSGLDSSSSQLLLR-ALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKK 741 (1118)
Q Consensus 663 sIArALl~~P~lLlLDEPTsGLD~~sa~~i~~-~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~ 741 (1118)
+|||||.++|+|+|||||||+||+.++..+++ .|+.+ .+|+|+|++||+++. ...+|+|++|.+ |++++.|+.++
T Consensus 750 aLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~-l~~kTvIlVTH~l~~--l~~aD~Ii~L~~-G~i~e~Gt~~e 825 (1622)
T PLN03130 750 SMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDE-LRGKTRVLVTNQLHF--LSQVDRIILVHE-GMIKEEGTYEE 825 (1622)
T ss_pred HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHH-hcCCEEEEEECCHhH--HHhCCEEEEEeC-CEEEEeCCHHH
Confidence 99999999999999999999999999998875 45544 368999999999864 478999999975 69999999988
Q ss_pred HH
Q 048718 742 VE 743 (1118)
Q Consensus 742 l~ 743 (1118)
+.
T Consensus 826 L~ 827 (1622)
T PLN03130 826 LS 827 (1622)
T ss_pred HH
Confidence 74
No 349
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=2.5e-32 Score=270.90 Aligned_cols=192 Identities=29% Similarity=0.440 Sum_probs=167.1
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CceeEEEECCEecCh-hhhcCeEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC-IMSGTILVNGKVASI-QSYKRIIG 590 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~-~~sG~I~inG~~~~~-~~~r~~Ig 590 (1118)
+.++||+... .+.-+|-+||++|.+||++-|||||||||||||.-+.|.+.+. ..+|++++|++.++. ...+++||
T Consensus 3 l~l~nvsl~l--~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~G 80 (213)
T COG4136 3 LCLKNVSLRL--PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIG 80 (213)
T ss_pred eeeeeeeecC--CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhee
Confidence 6788998766 3467999999999999999999999999999999999998742 359999999998754 34578899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
++|||+.+||+++|.+||.|+.. ..+....++..++..+++.||....++.+.+ ||||||-||++-|+|+.
T Consensus 81 iLFQD~lLFphlsVg~Nl~fAlp----~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~t-----lSGGQrARvaL~R~Lla 151 (213)
T COG4136 81 ILFQDALLFPHLSVGQNLLFALP----ATLKGNARRNAANAALERSGLDGAFHQDPAT-----LSGGQRARVALLRALLA 151 (213)
T ss_pred eeecccccccccccccceEEecC----cccccHHHHhhHHHHHHHhccchhhhcChhh-----cCcchHHHHHHHHHHHh
Confidence 99999999999999999999853 3344445667789999999999988887765 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEEcCCcH
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREA-LEGVNICTVVHQPSY 715 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la-~~G~TIIvvtHq~~~ 715 (1118)
.|+.++||||+|.||..-+.++.+.+-... ..|..+|++|||...
T Consensus 152 ~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~D 197 (213)
T COG4136 152 QPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQD 197 (213)
T ss_pred CcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccccc
Confidence 999999999999999999999999765544 459999999999764
No 350
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.98 E-value=2.9e-31 Score=325.29 Aligned_cols=206 Identities=23% Similarity=0.346 Sum_probs=161.5
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEE
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGF 591 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 591 (1118)
.|+++||+++|. ++.+|+||||+|++||+++|+||||||||||||+|+|+.+ |++|+|.++|.. .++|
T Consensus 3 ~l~i~~ls~~~~--~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~--p~~G~I~~~~~~--------~~~~ 70 (635)
T PRK11147 3 LISIHGAWLSFS--DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL--LDDGRIIYEQDL--------IVAR 70 (635)
T ss_pred EEEEeeEEEEeC--CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEeCCCC--------EEEE
Confidence 488999999994 4679999999999999999999999999999999999987 689999998731 2677
Q ss_pred EcCCCCCCCCCCHHHHHHHHH------------------------------hhcc-CCCCCHHHHHHHHHHHHHHcCCCc
Q 048718 592 VPQDDIVHGNLTVEENLWFSA------------------------------RCRL-SADLPKAEKVLVVERVIESLGLQH 640 (1118)
Q Consensus 592 V~Qd~~l~~~LTV~EnL~f~a------------------------------~lr~-~~~~~~~~~~~~v~~lL~~lgL~~ 640 (1118)
++|++......+|.+++..+. .+.. ...........+++++++.+||..
T Consensus 71 l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 150 (635)
T PRK11147 71 LQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDP 150 (635)
T ss_pred eccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCC
Confidence 777654333346666542110 0000 000000112346888999999963
Q ss_pred cccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhc
Q 048718 641 IRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRM 720 (1118)
Q Consensus 641 ~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~ 720 (1118)
++.+++ |||||||||+||++|+.+|+||||||||++||+.++..+.+.|+++ +.|||+||||... +.+.
T Consensus 151 --~~~~~~-----LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvlivsHd~~~-l~~~ 219 (635)
T PRK11147 151 --DAALSS-----LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFISHDRSF-IRNM 219 (635)
T ss_pred --CCchhh-----cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEEeCCHHH-HHHh
Confidence 666665 9999999999999999999999999999999999999999999876 3599999999875 5678
Q ss_pred cCcEEEEecCcEEE-EecChhh
Q 048718 721 FDDLILLAKGGVIV-YHGPVKK 741 (1118)
Q Consensus 721 ~D~vivL~~GG~iv-~~G~~~~ 741 (1118)
+|++++|.+ |+++ |.|+.++
T Consensus 220 ~d~i~~L~~-G~i~~~~g~~~~ 240 (635)
T PRK11147 220 ATRIVDLDR-GKLVSYPGNYDQ 240 (635)
T ss_pred cCeEEEEEC-CEEEEecCCHHH
Confidence 999999986 5775 6688764
No 351
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=1.7e-31 Score=278.49 Aligned_cols=153 Identities=26% Similarity=0.333 Sum_probs=133.1
Q ss_pred EeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCC
Q 048718 516 KDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQD 595 (1118)
Q Consensus 516 knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd 595 (1118)
.||++.|. ++.+++++ ++|++||+++|+||||||||||+|+|+|+++ +++|+|.++|.. ++|++|+
T Consensus 4 ~~l~~~~~--~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~---------i~~~~q~ 69 (177)
T cd03222 4 PDCVKRYG--VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI--PNGDNDEWDGIT---------PVYKPQY 69 (177)
T ss_pred CCeEEEEC--CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCcEEEECCEE---------EEEEccc
Confidence 56888884 46789885 8999999999999999999999999999998 689999999853 7898885
Q ss_pred CCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEE
Q 048718 596 DIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLL 675 (1118)
Q Consensus 596 ~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lL 675 (1118)
.. |||||||||+|||+|+.+|+++
T Consensus 70 ~~--------------------------------------------------------LSgGq~qrv~laral~~~p~ll 93 (177)
T cd03222 70 ID--------------------------------------------------------LSGGELQRVAIAAALLRNATFY 93 (177)
T ss_pred CC--------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 32 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEEcCCcHHHHhccCcEEEEecCcEEEEe--cChh
Q 048718 676 ILDEPTSGLDSSSSQLLLRALRREALEG-VNICTVVHQPSYALFRMFDDLILLAKGGVIVYH--GPVK 740 (1118)
Q Consensus 676 lLDEPTsGLD~~sa~~i~~~Lr~la~~G-~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~--G~~~ 740 (1118)
+|||||+|||+.++..+.+.|+++++++ .|||+++|+++. +.+++|++++|.++. .++. |++.
T Consensus 94 lLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~-~~~~~d~i~~l~~~~-~~~~~~~~~~ 159 (177)
T cd03222 94 LFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAV-LDYLSDRIHVFEGEP-GVYGIASQPK 159 (177)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHH-HHHhCCEEEEEcCCC-ccceeccCCc
Confidence 9999999999999999999999987664 999999999875 456899999997653 3433 5543
No 352
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.9e-31 Score=277.87 Aligned_cols=155 Identities=25% Similarity=0.326 Sum_probs=131.7
Q ss_pred CcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCH
Q 048718 525 KNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTV 604 (1118)
Q Consensus 525 ~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV 604 (1118)
..+++|+|+||+|++||+++|+||||||||||||+|.+ .+|+|.++|... ...+..++|++|
T Consensus 6 ~~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~~--~~~~~~~~~~~q---------- 67 (176)
T cd03238 6 ANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFLP--KFSRNKLIFIDQ---------- 67 (176)
T ss_pred eeeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCccc--ccccccEEEEhH----------
Confidence 34679999999999999999999999999999999853 479999988632 112345788877
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHHHHhhC--CCEEEEeCCC
Q 048718 605 EENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH-IRDSLVGTVEKRGISGGQRKRVNVGLEMVME--PSLLILDEPT 681 (1118)
Q Consensus 605 ~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~-~~dt~vg~~~~rgLSGGERQRVsIArALl~~--P~lLlLDEPT 681 (1118)
.++++.++|.. ..++++.+ ||||||||++||+||+.+ |++|||||||
T Consensus 68 -------------------------~~~l~~~~L~~~~~~~~~~~-----LSgGq~qrl~laral~~~~~p~llLlDEPt 117 (176)
T cd03238 68 -------------------------LQFLIDVGLGYLTLGQKLST-----LSGGELQRVKLASELFSEPPGTLFILDEPS 117 (176)
T ss_pred -------------------------HHHHHHcCCCccccCCCcCc-----CCHHHHHHHHHHHHHhhCCCCCEEEEeCCc
Confidence 13567788865 35666554 999999999999999999 9999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEec
Q 048718 682 SGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAK 729 (1118)
Q Consensus 682 sGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~ 729 (1118)
+|||+.++..+.+.|+++.+.|+|||++||+++. + +.+|++++|.+
T Consensus 118 ~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~-~-~~~d~i~~l~~ 163 (176)
T cd03238 118 TGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDV-L-SSADWIIDFGP 163 (176)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEECC
Confidence 9999999999999999987779999999999875 3 67999999965
No 353
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.97 E-value=8e-32 Score=340.01 Aligned_cols=224 Identities=27% Similarity=0.471 Sum_probs=203.0
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh----hhhc
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI----QSYK 586 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r 586 (1118)
..+..++|++.|...++ +++++|+.|++||+.+++|+|||||||++|+|.|..+ +++|++.++|.++.. .+.+
T Consensus 563 ~~~~~~~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~--~t~G~a~i~g~~i~~~~~~~~~~ 639 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK--PTSGEALIKGHDITVSTDFQQVR 639 (885)
T ss_pred ceEEEcceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc--CCcceEEEecCccccccchhhhh
Confidence 45788999999964333 9999999999999999999999999999999999998 789999999987642 2367
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 048718 587 RIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGL 666 (1118)
Q Consensus 587 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIAr 666 (1118)
+.+||+||+|.+++.||.+|+|.+.++++ +++..+..+.++.+++.+||.+..++.++. +|||+|+|+++|.
T Consensus 640 ~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~~~-----ySgG~kRkLs~ai 711 (885)
T KOG0059|consen 640 KQLGYCPQFDALWEELTGREHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQVRT-----YSGGNKRRLSFAI 711 (885)
T ss_pred hhcccCCchhhhhhhccHHHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccchhh-----CCCcchhhHHHHH
Confidence 88999999999999999999999999876 566666777799999999999999999887 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHHHHH
Q 048718 667 EMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVEEYF 746 (1118)
Q Consensus 667 ALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~~yf 746 (1118)
||+.+|++++|||||+|+||.+++.+.++++++.++|+.||++||.+++. ..+|||+.+|.+ |++.-.|++++++..|
T Consensus 712 alig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~-EaLCtR~aImv~-G~l~ciGs~q~LKsrf 789 (885)
T KOG0059|consen 712 ALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEA-EALCTRTAIMVI-GQLRCIGSPQELKSRY 789 (885)
T ss_pred HHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH-HHHhhhhheeec-CeeEEecChHHHHhhc
Confidence 99999999999999999999999999999999998888999999999865 689999999987 5899999999999766
Q ss_pred H
Q 048718 747 A 747 (1118)
Q Consensus 747 ~ 747 (1118)
.
T Consensus 790 G 790 (885)
T KOG0059|consen 790 G 790 (885)
T ss_pred C
Confidence 3
No 354
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=1.1e-30 Score=278.91 Aligned_cols=202 Identities=25% Similarity=0.301 Sum_probs=179.5
Q ss_pred ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHH
Q 048718 527 KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEE 606 (1118)
Q Consensus 527 k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~E 606 (1118)
..+|+||||++++||.++|+|+||||||||||+|+|.++ |++|+|.++|+....-.+ .+ .+.|.+|.+|
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~--Pt~G~v~v~G~v~~li~l--g~-------Gf~pelTGre 108 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK--PTSGKVKVTGKVAPLIEL--GA-------GFDPELTGRE 108 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC--CCCceEEEcceEehhhhc--cc-------CCCcccchHH
Confidence 579999999999999999999999999999999999998 799999999974322111 12 3457799999
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048718 607 NLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDS 686 (1118)
Q Consensus 607 nL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~ 686 (1118)
|+.+-..+. ++.+.+.+++++++++.-+|.+..|.++.+ +|-||+-|++.|.|...+|+|||+||-.+-.|+
T Consensus 109 Ni~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pvkt-----YSSGM~aRLaFsia~~~~pdILllDEvlavGD~ 180 (249)
T COG1134 109 NIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPVKT-----YSSGMYARLAFSVATHVEPDILLLDEVLAVGDA 180 (249)
T ss_pred HHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCchhh-----ccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCH
Confidence 999977653 567888889999999999999999999876 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHHHHHHhc
Q 048718 687 SSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVEEYFASL 749 (1118)
Q Consensus 687 ~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~~yf~~l 749 (1118)
.-++.-.+.++++.++++|||+++|+++. +.++||++++|.+ |++++.|.++++.+++...
T Consensus 181 ~F~~K~~~rl~e~~~~~~tiv~VSHd~~~-I~~~Cd~~i~l~~-G~i~~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 181 AFQEKCLERLNELVEKNKTIVLVSHDLGA-IKQYCDRAIWLEH-GQIRMEGSPEEVIPAYEED 241 (249)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECCHHH-HHHhcCeeEEEeC-CEEEEcCCHHHHHHHHHHh
Confidence 99999999999998888999999999975 7899999999976 6999999999998887653
No 355
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.97 E-value=2.5e-31 Score=351.36 Aligned_cols=209 Identities=22% Similarity=0.383 Sum_probs=169.8
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEE
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGF 591 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 591 (1118)
.++++|+++.|+...+++|+|+|++|++||+++|+|||||||||||++|+|+++ +.+|+|.++| .|+|
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~--~~~G~i~~~g----------~i~y 703 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVHMKG----------SVAY 703 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--cCCcEEEECC----------EEEE
Confidence 589999999996444679999999999999999999999999999999999998 6899999987 4899
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHH--HHHHHcCC-CccccccccCccCCCCCHHHHHHHHHHHHH
Q 048718 592 VPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVE--RVIESLGL-QHIRDSLVGTVEKRGISGGQRKRVNVGLEM 668 (1118)
Q Consensus 592 V~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~--~lL~~lgL-~~~~dt~vg~~~~rgLSGGERQRVsIArAL 668 (1118)
|+|++.++ +.||+|||.|+... .++..++.++ .+.+.+++ .+..+|.+|+ .+..|||||||||+|||||
T Consensus 704 v~Q~~~l~-~~Ti~eNI~~g~~~------~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~-~g~~LSGGQkqRiaLARAl 775 (1522)
T TIGR00957 704 VPQQAWIQ-NDSLRENILFGKAL------NEKYYQQVLEACALLPDLEILPSGDRTEIGE-KGVNLSGGQKQRVSLARAV 775 (1522)
T ss_pred EcCCcccc-CCcHHHHhhcCCcc------CHHHHHHHHHHhCCHHHHHhcCCCCCceecC-CCCCCCHHHHHHHHHHHHH
Confidence 99999887 46999999986421 1111111111 11222322 3344567775 4567999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH--HHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 669 VMEPSLLILDEPTSGLDSSSSQLLLRALRRE--ALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 669 l~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~l--a~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
+.+|+|++|||||++||+.++..+++.+... ..+|+|+|++||+++.. ..+|++++|.+ |++++.|+.+++.
T Consensus 776 ~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l--~~~D~ii~l~~-G~i~~~g~~~~l~ 849 (1522)
T TIGR00957 776 YSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYL--PQVDVIIVMSG-GKISEMGSYQELL 849 (1522)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhh--hhCCEEEEecC-CeEEeeCCHHHHH
Confidence 9999999999999999999999999998753 23589999999998753 56999999975 6999999998874
No 356
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=1.8e-31 Score=323.69 Aligned_cols=190 Identities=24% Similarity=0.280 Sum_probs=159.0
Q ss_pred eEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEE-----------ECCEecChh--
Q 048718 517 DLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTIL-----------VNGKVASIQ-- 583 (1118)
Q Consensus 517 nLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~-----------inG~~~~~~-- 583 (1118)
+++++|+ ++..+|++++ .+++||+++|+||||||||||||+|+|+++ |++|+|. ++|.++...
T Consensus 78 ~~~~~yg-~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~--p~~G~i~~~~~~~~~~~~~~G~~l~~~~~ 153 (590)
T PRK13409 78 EPVHRYG-VNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI--PNLGDYEEEPSWDEVLKRFRGTELQNYFK 153 (590)
T ss_pred CceEEec-CCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCccccCCCcHHHHHHHhCChHHHHHHH
Confidence 3788884 3357999999 999999999999999999999999999998 6899997 899765321
Q ss_pred h---hcCeEEEEcCCCCCCCC---CCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 048718 584 S---YKRIIGFVPQDDIVHGN---LTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGG 657 (1118)
Q Consensus 584 ~---~r~~IgyV~Qd~~l~~~---LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGG 657 (1118)
. .+..+++.+|....+|. .||+|+|.+. +....++++++.+||.+..++.+++ ||||
T Consensus 154 ~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~~-----LSgG 216 (590)
T PRK13409 154 KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDISE-----LSGG 216 (590)
T ss_pred HHhccCcceeecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChhh-----CCHH
Confidence 1 12345666665444333 3999998642 1224578999999999888988876 9999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEec
Q 048718 658 QRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAK 729 (1118)
Q Consensus 658 ERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~ 729 (1118)
|||||+||++|+.+|+||||||||++||+.++..+.+.|+++++ |+|||+++|+++. +..++|++++|.+
T Consensus 217 e~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~-l~~~~D~v~vl~~ 286 (590)
T PRK13409 217 ELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAV-LDYLADNVHIAYG 286 (590)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHH-HHHhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999988 9999999999975 5688999999964
No 357
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=3.5e-31 Score=269.90 Aligned_cols=220 Identities=22% Similarity=0.371 Sum_probs=186.5
Q ss_pred EEEEeEEEEEcC-------CcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChh--
Q 048718 513 VAFKDLTITLKG-------KNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQ-- 583 (1118)
Q Consensus 513 l~~knLs~~~~~-------~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~-- 583 (1118)
++++||++++.. ....+++.|||+++.|+.+||+|.||||||||.|+|+|.++ |++|+|++||+++.-.
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~--PTsG~il~n~~~L~~~Dy 82 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGEILINDHPLHFGDY 82 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC--CCCceEEECCccccccch
Confidence 567778777642 22468999999999999999999999999999999999998 7999999999876432
Q ss_pred hh-cCeEEEEcCCCC--CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHH
Q 048718 584 SY-KRIIGFVPQDDI--VHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-HIRDSLVGTVEKRGISGGQR 659 (1118)
Q Consensus 584 ~~-r~~IgyV~Qd~~--l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-~~~dt~vg~~~~rgLSGGER 659 (1118)
.+ .+.|-++|||+. +-|.+.+.+-|.+.+++. .++....+.+++-+.|..+||- +.++-++ .-||-|||
T Consensus 83 ~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~--T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~-----~~la~~QK 155 (267)
T COG4167 83 SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLN--TDLEPEQRRKQIFETLRMVGLLPDHANYYP-----HMLAPGQK 155 (267)
T ss_pred HhhhhheeeeecCCccccChhhhhhhHhcchhhhc--ccCChHHHHHHHHHHHHHhccCccccccch-----hhcCchhH
Confidence 23 357999999985 567889999888887654 4566677778899999999984 4455444 45999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecC
Q 048718 660 KRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGP 738 (1118)
Q Consensus 660 QRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~ 738 (1118)
|||++||||+.+|+|+|.||...+||...+.+++++.-++.++ |.+-|.++.+... +..+.|+|+||++ |++|+.|.
T Consensus 156 QRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~-iKHi~D~viVM~E-G~vvE~G~ 233 (267)
T COG4167 156 QRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGM-IKHISDQVLVMHE-GEVVERGS 233 (267)
T ss_pred HHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhH-hhhhcccEEEEec-CceeecCC
Confidence 9999999999999999999999999999999999999888854 9999999999874 6789999999987 58999999
Q ss_pred hhhHH
Q 048718 739 VKKVE 743 (1118)
Q Consensus 739 ~~~l~ 743 (1118)
+.++.
T Consensus 234 t~~v~ 238 (267)
T COG4167 234 TADVL 238 (267)
T ss_pred hhhhh
Confidence 98763
No 358
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.3e-30 Score=265.11 Aligned_cols=152 Identities=39% Similarity=0.672 Sum_probs=136.3
Q ss_pred EEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcCeEEE
Q 048718 515 FKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKRIIGF 591 (1118)
Q Consensus 515 ~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~Igy 591 (1118)
++++++.|. ++.+|+++|++|++||+++|+|+||||||||+++|+|+++ +.+|+|+++|.+... ..+++.++|
T Consensus 2 ~~~~~~~~~--~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~~~~i~~ 77 (157)
T cd00267 2 IENLSFRYG--GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEELRRRIGY 77 (157)
T ss_pred eEEEEEEeC--CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccCCHHHHHhceEE
Confidence 678999985 3479999999999999999999999999999999999997 689999999986532 245677999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 048718 592 VPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVME 671 (1118)
Q Consensus 592 V~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~ 671 (1118)
++| |||||+||++||++|+.+
T Consensus 78 ~~q-----------------------------------------------------------lS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 78 VPQ-----------------------------------------------------------LSGGQRQRVALARALLLN 98 (157)
T ss_pred Eee-----------------------------------------------------------CCHHHHHHHHHHHHHhcC
Confidence 999 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecC
Q 048718 672 PSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKG 730 (1118)
Q Consensus 672 P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~G 730 (1118)
|++++|||||+|||..++..+.+.|+++...+.|+++++|+++. +...+|++++|.+|
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~-~~~~~d~i~~l~~g 156 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPEL-AELAADRVIVLKDG 156 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEeCc
Confidence 99999999999999999999999999987668999999999876 44668999999763
No 359
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.97 E-value=2.4e-30 Score=341.29 Aligned_cols=195 Identities=23% Similarity=0.387 Sum_probs=156.1
Q ss_pred ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHH
Q 048718 527 KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEE 606 (1118)
Q Consensus 527 k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~E 606 (1118)
+++|+|+|++|++||+++|+|||||||||||++|+|+.+ +.+|+|.++| .|+||+|++.+++. ||+|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~--~~~G~i~~~g----------~iayv~Q~~~l~~~-Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE--PSEGKIKHSG----------RISFSPQTSWIMPG-TIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECC----------EEEEEeCCCccCCc-cHHH
Confidence 469999999999999999999999999999999999998 6899999988 38999999999875 9999
Q ss_pred HHHHHHhhccCCCCCHHH-HHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048718 607 NLWFSARCRLSADLPKAE-KVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLD 685 (1118)
Q Consensus 607 nL~f~a~lr~~~~~~~~~-~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD 685 (1118)
||.|+.... ....... +...+++.++.+ .+..+|.+|+ ....|||||||||+|||||+.+|+|+||||||+|||
T Consensus 506 NI~~g~~~~--~~~~~~~~~~~~L~~~l~~l--~~g~~t~vg~-~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD 580 (1490)
T TIGR01271 506 NIIFGLSYD--EYRYTSVIKACQLEEDIALF--PEKDKTVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFTHLD 580 (1490)
T ss_pred HHHhccccc--hHHHHHHHHHHhHHHHHHhc--cccccccccC-cCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 999874211 0000000 001122223322 2233566665 356799999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 686 SSSSQLLLRA-LRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 686 ~~sa~~i~~~-Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
+.++..+++. ++.+. +|+|+|++||+++.. ..+|++++|.+ |++++.|+.+++.
T Consensus 581 ~~~~~~i~~~~l~~~~-~~~tvilvtH~~~~~--~~ad~ii~l~~-g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 581 VVTEKEIFESCLCKLM-SNKTRILVTSKLEHL--KKADKILLLHE-GVCYFYGTFSELQ 635 (1490)
T ss_pred HHHHHHHHHHHHHHHh-cCCeEEEEeCChHHH--HhCCEEEEEEC-CEEEEEcCHHHHH
Confidence 9999999985 56554 589999999998753 56999999975 6899999998874
No 360
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=7.9e-30 Score=303.78 Aligned_cols=210 Identities=27% Similarity=0.404 Sum_probs=174.1
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEE
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIG 590 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 590 (1118)
..|.++||++.| +.+.+|+|+|+++.+|+.+||||+||||||||||+|+|... +++|+|...+. -+|+
T Consensus 2 ~~i~~~~ls~~~--g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~--~~~G~i~~~~~--------~~v~ 69 (530)
T COG0488 2 SMITLENLSLAY--GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE--PDSGEVTRPKG--------LRVG 69 (530)
T ss_pred ceEEEeeeEEee--CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc--CCCCeEeecCC--------ceEE
Confidence 358899999999 46889999999999999999999999999999999999997 68999987542 2599
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccC--CC-------------------------CCHHHHHHHHHHHHHHcCCCcccc
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLS--AD-------------------------LPKAEKVLVVERVIESLGLQHIRD 643 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~--~~-------------------------~~~~~~~~~v~~lL~~lgL~~~~d 643 (1118)
|++|++.+.+..||.+.+.-+..-... .. ......+.++..++..||+.+. +
T Consensus 70 ~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~ 148 (530)
T COG0488 70 YLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-D 148 (530)
T ss_pred EeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-c
Confidence 999999999999999988765421000 00 0001123567788888999877 8
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCc
Q 048718 644 SLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDD 723 (1118)
Q Consensus 644 t~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~ 723 (1118)
+.+++ ||||||.||+||++|+.+|+||+|||||+.||..+..-+.+.|+.. .| |+|+||||-.+ +-+.+++
T Consensus 149 ~~~~~-----LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR~F-Ld~V~t~ 219 (530)
T COG0488 149 RPVSS-----LSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDRYF-LDNVATH 219 (530)
T ss_pred Cchhh-----cCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCHHH-HHHHhhh
Confidence 88877 9999999999999999999999999999999999999888888643 57 99999999765 6789999
Q ss_pred EEEEecCcEEEEecChhhH
Q 048718 724 LILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 724 vivL~~GG~iv~~G~~~~l 742 (1118)
++-|+.|....|.|..+..
T Consensus 220 I~~ld~g~l~~y~Gny~~~ 238 (530)
T COG0488 220 ILELDRGKLTPYKGNYSSY 238 (530)
T ss_pred eEEecCCceeEecCCHHHH
Confidence 9999887677888887643
No 361
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.4e-30 Score=265.02 Aligned_cols=188 Identities=28% Similarity=0.392 Sum_probs=163.4
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh--hhhcCeEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI--QSYKRIIG 590 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~Ig 590 (1118)
++.+||+... +.+.++.++||++.+||++-|.||||||||||||+|+|+.+ |.+|+|.++|..++. +.+.+.+-
T Consensus 3 L~a~~L~~~R--~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~--p~~G~v~~~~~~i~~~~~~~~~~l~ 78 (209)
T COG4133 3 LEAENLSCER--GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR--PDAGEVYWQGEPIQNVRESYHQALL 78 (209)
T ss_pred chhhhhhhcc--CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC--CCCCeEEecCCCCccchhhHHHHHH
Confidence 4456676655 45789999999999999999999999999999999999998 799999999977643 23566788
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
|+--.+.+-+.|||.|||.|....... .. ...+.+.++.+||....|.+++. ||-||||||+|||-+++
T Consensus 79 yLGH~~giK~eLTa~ENL~F~~~~~~~--~~----~~~i~~Al~~vgL~g~~dlp~~~-----LSAGQqRRvAlArL~ls 147 (209)
T COG4133 79 YLGHQPGIKTELTALENLHFWQRFHGS--GN----AATIWEALAQVGLAGLEDLPVGQ-----LSAGQQRRVALARLWLS 147 (209)
T ss_pred HhhccccccchhhHHHHHHHHHHHhCC--Cc----hhhHHHHHHHcCcccccccchhh-----cchhHHHHHHHHHHHcC
Confidence 888888888999999999998765432 11 23478899999999999999987 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcH
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSY 715 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~ 715 (1118)
.+++.||||||++||......+-..+..-+.+|-.||.+|||+..
T Consensus 148 ~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 148 PAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 999999999999999999999999888877788899999999864
No 362
>PTZ00243 ABC transporter; Provisional
Probab=99.97 E-value=9.8e-30 Score=336.08 Aligned_cols=196 Identities=28% Similarity=0.452 Sum_probs=153.0
Q ss_pred cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHH
Q 048718 526 NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVE 605 (1118)
Q Consensus 526 ~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~ 605 (1118)
++.+|+|+|++|++||+++|+|||||||||||++|+|+++ +++|+|.++ +.|+|++|++.++ +.||+
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~--~~~G~i~~~----------~~i~yv~Q~~~l~-~~Tv~ 738 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE--ISEGRVWAE----------RSIAYVPQQAWIM-NATVR 738 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEEC----------CeEEEEeCCCccC-CCcHH
Confidence 4679999999999999999999999999999999999998 689999763 4699999999887 46999
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHHHc--CCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 048718 606 ENLWFSARCRLSADLPKAEKVLVVERVIESL--GLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSG 683 (1118)
Q Consensus 606 EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~l--gL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsG 683 (1118)
|||.|+.... .....+..+...+++.++.+ |+. +.+++ ....|||||||||+|||||+.+|+|+||||||++
T Consensus 739 enI~~~~~~~-~~~~~~~~~~~~l~~~l~~l~~g~~----t~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLDEP~sa 812 (1560)
T PTZ00243 739 GNILFFDEED-AARLADAVRVSQLEADLAQLGGGLE----TEIGE-KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSA 812 (1560)
T ss_pred HHHHcCChhh-HHHHHHHHHHhhhHHHHHHhhccch----HHhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence 9999853210 00000001111234445555 443 33433 3445999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 684 LDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 684 LD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
||+.++..+++.+......|+|+|++||+++.. ..+|++++|.+ |++++.|+.+++.
T Consensus 813 LD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~--~~ad~ii~l~~-G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 813 LDAHVGERVVEECFLGALAGKTRVLATHQVHVV--PRADYVVALGD-GRVEFSGSSADFM 869 (1560)
T ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHH--HhCCEEEEEEC-CEEEEecCHHHHH
Confidence 999999998875432233589999999998753 67999999976 6899999988764
No 363
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=7.7e-30 Score=258.38 Aligned_cols=216 Identities=27% Similarity=0.362 Sum_probs=168.5
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEe---cC-----hh
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKV---AS-----IQ 583 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~---~~-----~~ 583 (1118)
-+.+.+|++.|. ...--+||||.+.|||+++|+|.|||||||||++|++.+. |+.|+|.|.-.+ .+ +.
T Consensus 6 LL~V~~lsk~Yg--~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~--p~~G~v~Y~~r~~~~~dl~~msEa 81 (258)
T COG4107 6 LLSVSGLSKLYG--PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT--PDAGTVTYRMRDGQPRDLYTMSEA 81 (258)
T ss_pred ceeehhhhhhhC--CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC--CCCCeEEEEcCCCCchhHhhhchH
Confidence 578899999994 3557899999999999999999999999999999999998 789999996532 21 11
Q ss_pred ----hhcCeEEEEcCCCC--CCC----CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCC
Q 048718 584 ----SYKRIIGFVPQDDI--VHG----NLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRG 653 (1118)
Q Consensus 584 ----~~r~~IgyV~Qd~~--l~~----~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rg 653 (1118)
-.|..-|||.|+|. +-. .-.|.|-++-.. .......++...++++.+.+...+ +. +.++.
T Consensus 82 eRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G------~RHYG~iR~~a~~WL~~VEI~~~R---iD-D~Prt 151 (258)
T COG4107 82 ERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIG------ARHYGNIRAEAQDWLEEVEIDLDR---ID-DLPRT 151 (258)
T ss_pred HHHHHhhhccceeecCccccceeeeccCCccchhHHhhh------hhhhhhHHHHHHHHHHhcccCccc---cc-Ccccc
Confidence 13456899999974 221 123344332111 112234556678899999886422 21 35677
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcE
Q 048718 654 ISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGV 732 (1118)
Q Consensus 654 LSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~ 732 (1118)
+||||+||+.|||-|++.|+++|+||||.|||...+.+++++++.+..+ |.+++++|||+..+ --++|+.++|.+ |+
T Consensus 152 FSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~Va-rLla~rlmvmk~-g~ 229 (258)
T COG4107 152 FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVA-RLLADRLMVMKQ-GQ 229 (258)
T ss_pred cchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHH-HHhhhcceeecC-CC
Confidence 9999999999999999999999999999999999999999999999865 99999999998643 346788888865 68
Q ss_pred EEEecChhhHH
Q 048718 733 IVYHGPVKKVE 743 (1118)
Q Consensus 733 iv~~G~~~~l~ 743 (1118)
+++.|-.+.+.
T Consensus 230 vve~GLTDrvL 240 (258)
T COG4107 230 VVESGLTDRVL 240 (258)
T ss_pred Eeccccccccc
Confidence 99999887653
No 364
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=1.6e-29 Score=321.19 Aligned_cols=218 Identities=23% Similarity=0.367 Sum_probs=182.7
Q ss_pred ceEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhc
Q 048718 510 TIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYK 586 (1118)
Q Consensus 510 ~~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r 586 (1118)
...|+|+|++++|..+...||+|||++|+|||-+||+|+.|||||||+++|-++.. +.+|+|.|||.++. ...+|
T Consensus 1136 ~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e--~~~G~I~IDgvdI~~igL~dLR 1213 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE--PAEGEILIDGVDISKIGLHDLR 1213 (1381)
T ss_pred CCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC--ccCCeEEEcCeecccccHHHHH
Confidence 35799999999997666789999999999999999999999999999999999998 68999999999874 46899
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 048718 587 RIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVL-----VVERVIESLGLQHIRDSLVGTVEKRGISGGQRKR 661 (1118)
Q Consensus 587 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~-----~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQR 661 (1118)
++++.+||||.+|.. |||.||.=.- ..++++.-+ ...+.++ .+....|..|.+ +...+|-||||.
T Consensus 1214 srlsIIPQdPvLFsG-TvR~NLDPf~------e~sD~~IW~ALe~~~Lk~~v~--~~p~~Ld~~v~e-gG~N~SvGQRQL 1283 (1381)
T KOG0054|consen 1214 SRLSIIPQDPVLFSG-TVRFNLDPFD------EYSDDEIWEALERCQLKDVVS--SLPGGLDSEVSE-GGENFSVGQRQL 1283 (1381)
T ss_pred hcCeeeCCCCceecC-ccccccCccc------ccCHHHHHHHHHHhChHHHHh--hCCcCCCceecC-CCccCChHHHHH
Confidence 999999999999976 9999996321 223333221 2223333 233446677764 556799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhh
Q 048718 662 VNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKK 741 (1118)
Q Consensus 662 VsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~ 741 (1118)
|++||||+++++||+|||+|++.|+.+-..|.+.||+.= .+.|||.|.|+.+.. --+|+|+||++ |+++++|+|.+
T Consensus 1284 lCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~TV--md~DrVlVld~-G~v~EfdsP~~ 1359 (1381)
T KOG0054|consen 1284 LCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNTV--MDSDRVLVLDA-GRVVEFDSPAE 1359 (1381)
T ss_pred HHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccchh--hhcCeEEEeeC-CeEeecCChHH
Confidence 999999999999999999999999999999999998743 479999999999864 35899999987 69999999998
Q ss_pred HH
Q 048718 742 VE 743 (1118)
Q Consensus 742 l~ 743 (1118)
+.
T Consensus 1360 Ll 1361 (1381)
T KOG0054|consen 1360 LL 1361 (1381)
T ss_pred HH
Confidence 75
No 365
>PLN03073 ABC transporter F family; Provisional
Probab=99.96 E-value=9.1e-30 Score=314.39 Aligned_cols=221 Identities=22% Similarity=0.285 Sum_probs=159.2
Q ss_pred CceEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CCCceeEEEECCEec-----Ch
Q 048718 509 PTIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVP-GCIMSGTILVNGKVA-----SI 582 (1118)
Q Consensus 509 ~~~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~-~~~~sG~I~inG~~~-----~~ 582 (1118)
....|.++||+++|. ++.+|+|+||+|.+||.++|+||||||||||||+|+|+.. +.|..|+|.+.++.. ..
T Consensus 174 ~~~~I~i~nls~~y~--~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~ 251 (718)
T PLN03073 174 AIKDIHMENFSISVG--GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTA 251 (718)
T ss_pred CceeEEEceEEEEeC--CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCH
Confidence 345799999999994 4579999999999999999999999999999999999742 235678887644321 10
Q ss_pred ------------hhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccC---------------CCCCHHHHHHHHHHHHHH
Q 048718 583 ------------QSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLS---------------ADLPKAEKVLVVERVIES 635 (1118)
Q Consensus 583 ------------~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~---------------~~~~~~~~~~~v~~lL~~ 635 (1118)
..++..++|++|++.+... ++.++.........+ ..........++.++++.
T Consensus 252 ~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~ 330 (718)
T PLN03073 252 LQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAG 330 (718)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence 0012336677765433211 111111000000000 000001233457778888
Q ss_pred cCCC-ccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCc
Q 048718 636 LGLQ-HIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPS 714 (1118)
Q Consensus 636 lgL~-~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~ 714 (1118)
+||. +..++.+++ |||||||||+||++|+.+|+||||||||++||+.+...+.+.|+++ +.|||+++|+..
T Consensus 331 lgl~~~~~~~~~~~-----LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd~~ 402 (718)
T PLN03073 331 LSFTPEMQVKATKT-----FSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHARE 402 (718)
T ss_pred CCCChHHHhCchhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHH
Confidence 8885 456777766 9999999999999999999999999999999999999999999875 689999999987
Q ss_pred HHHHhccCcEEEEecCcEEE-EecChhhH
Q 048718 715 YALFRMFDDLILLAKGGVIV-YHGPVKKV 742 (1118)
Q Consensus 715 ~~i~~~~D~vivL~~GG~iv-~~G~~~~l 742 (1118)
. +.+.+|++++|.+ |+++ |.|+.++.
T Consensus 403 ~-l~~~~d~i~~l~~-g~i~~~~g~~~~~ 429 (718)
T PLN03073 403 F-LNTVVTDILHLHG-QKLVTYKGDYDTF 429 (718)
T ss_pred H-HHHhCCEEEEEEC-CEEEEeCCCHHHH
Confidence 5 5678999999986 5764 78887654
No 366
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.96 E-value=4.1e-29 Score=246.96 Aligned_cols=134 Identities=41% Similarity=0.733 Sum_probs=119.7
Q ss_pred eeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcCeEEEEcCCCCCCCCCCHHH
Q 048718 530 MRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKRIIGFVPQDDIVHGNLTVEE 606 (1118)
Q Consensus 530 L~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~IgyV~Qd~~l~~~LTV~E 606 (1118)
|+|||++|++||+++|+|+||||||||+++|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP--PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH--ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc--cccccccccccccccccccccccccccccccccccccccccc
Confidence 789999999999999999999999999999999998 589999999998754 456788999999999999999999
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 048718 607 NLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTS 682 (1118)
Q Consensus 607 nL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTs 682 (1118)
| .....++++++.+++.+..++.++. ....|||||||||+||+||+.+|++|||||||+
T Consensus 79 ~----------------~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N----------------ESDERIEEVLKKLGLEDLLDRKIGQ-RASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H----------------HHHHHHHHHHHHTTHGGGTGSBGTS-CGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c----------------ccccccccccccccccccccccccc-ccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9 1223588899999998888888754 336699999999999999999999999999996
No 367
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=3.7e-28 Score=262.31 Aligned_cols=193 Identities=21% Similarity=0.286 Sum_probs=135.7
Q ss_pred CcceeeeeeEEEEeCCeEEEEECCCCCcHHHHH-HHHHcCCCCCCceeEEEEC-----------C-E-ecChhhhc-CeE
Q 048718 525 KNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFL-SALKGRVPGCIMSGTILVN-----------G-K-VASIQSYK-RII 589 (1118)
Q Consensus 525 ~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLL-kiLaGl~~~~~~sG~I~in-----------G-~-~~~~~~~r-~~I 589 (1118)
.+.++|++|||+|++||+++|+|+||||||||+ ..|.. .|++.+. | . .......+ ...
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSP 78 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-------HHHHHHhhcccchhhhhhcccCccccccccCCCc
Confidence 456799999999999999999999999999996 44431 1221110 0 0 00001111 124
Q ss_pred EEEcCCCC--CCCCCCHHH---HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHH
Q 048718 590 GFVPQDDI--VHGNLTVEE---NLWFSARCRLSADLPKAEKVLVVERVIESLGLQH-IRDSLVGTVEKRGISGGQRKRVN 663 (1118)
Q Consensus 590 gyV~Qd~~--l~~~LTV~E---nL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~-~~dt~vg~~~~rgLSGGERQRVs 663 (1118)
.+..|++. +.+..+|.. ...+...+. .......+ .++++.+||.+ ..+.++.+ |||||||||+
T Consensus 79 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~~~~-----LSgG~~qrv~ 147 (226)
T cd03270 79 AIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRSAPT-----LSGGEAQRIR 147 (226)
T ss_pred eEEecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCccCc-----CCHHHHHHHH
Confidence 44444432 234446543 222221111 11112222 46789999976 46777665 9999999999
Q ss_pred HHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEe-----cCcEEEEe
Q 048718 664 VGLEMVMEP--SLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLA-----KGGVIVYH 736 (1118)
Q Consensus 664 IArALl~~P--~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~-----~GG~iv~~ 736 (1118)
||++|+.+| ++|||||||+|||+.++..+.+.|++++++|.|+|++||+++. + +.+|++++|. ++|+|+++
T Consensus 148 laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~-~-~~~d~i~~l~~~~~~~~G~iv~~ 225 (226)
T cd03270 148 LATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDT-I-RAADHVIDIGPGAGVHGGEIVAQ 225 (226)
T ss_pred HHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHH-H-HhCCEEEEeCCCccccCCEEEec
Confidence 999999998 5999999999999999999999999998779999999999875 4 6899999992 34789987
Q ss_pred c
Q 048718 737 G 737 (1118)
Q Consensus 737 G 737 (1118)
|
T Consensus 226 g 226 (226)
T cd03270 226 G 226 (226)
T ss_pred C
Confidence 6
No 368
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=5.2e-28 Score=307.53 Aligned_cols=207 Identities=26% Similarity=0.486 Sum_probs=174.1
Q ss_pred ceEEEEEeEEEEEcCC-cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCe
Q 048718 510 TIEVAFKDLTITLKGK-NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRI 588 (1118)
Q Consensus 510 ~~~l~~knLs~~~~~~-~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~ 588 (1118)
...++++|.+++.... ..+.|+|||++|++|+.+||+|+-|||||+||.+|.|..+ ..+|+|.++|.
T Consensus 516 ~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~--~~sG~v~v~gs---------- 583 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP--KLSGSVAVNGS---------- 583 (1381)
T ss_pred CceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc--cccceEEEcCe----------
Confidence 3468999999998642 3459999999999999999999999999999999999998 68999999985
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCCCCCHHHHHH
Q 048718 589 IGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH-------IRDSLVGTVEKRGISGGQRKR 661 (1118)
Q Consensus 589 IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~-------~~dt~vg~~~~rgLSGGERQR 661 (1118)
++||+|.+-++. -||+|||.|+... . +++-+++++...|.+ .-.|.+|+ ..-.||||||||
T Consensus 584 iaYv~Q~pWI~n-gTvreNILFG~~~------d----~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGE-rGinLSGGQKqR 651 (1381)
T KOG0054|consen 584 VAYVPQQPWIQN-GTVRENILFGSPY------D----EERYDKVIKACALKKDLEILPFGDLTEIGE-RGINLSGGQKQR 651 (1381)
T ss_pred EEEeccccHhhC-CcHHHhhhcCccc------c----HHHHHHHHHHccCHhHHhhcCCCCcceecC-CccCCcHhHHHH
Confidence 899999999985 4999999998532 1 234566666666543 33466675 334599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhh
Q 048718 662 VNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKK 741 (1118)
Q Consensus 662 VsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~ 741 (1118)
|++|||+-++++|++||.|.|++|+.....+++..-....+++|+|++|||... ...+|.|++|.+ |+|++.|+.+|
T Consensus 652 IsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~--L~~ad~Iivl~~-G~I~~~Gty~e 728 (1381)
T KOG0054|consen 652 ISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQF--LPHADQIIVLKD-GKIVESGTYEE 728 (1381)
T ss_pred HHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhh--hhhCCEEEEecC-CeEecccCHHH
Confidence 999999999999999999999999999999998654444568999999999764 478999999975 79999999998
Q ss_pred HH
Q 048718 742 VE 743 (1118)
Q Consensus 742 l~ 743 (1118)
+.
T Consensus 729 l~ 730 (1381)
T KOG0054|consen 729 LL 730 (1381)
T ss_pred HH
Confidence 86
No 369
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.7e-28 Score=245.64 Aligned_cols=206 Identities=22% Similarity=0.344 Sum_probs=168.6
Q ss_pred EEEEEeEEEEEc----C-CcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEe--cC---
Q 048718 512 EVAFKDLTITLK----G-KNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKV--AS--- 581 (1118)
Q Consensus 512 ~l~~knLs~~~~----~-~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~--~~--- 581 (1118)
.+.++||++++. + -.-++|+|+||+++.||.+++=||||||||||||+|-|-+. +++|+|++.-.. ++
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~--~d~G~I~v~H~g~~vdl~~ 81 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL--PDEGQILVRHEGEWVDLVT 81 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC--CCCceEEEEeCcchhhhhc
Confidence 366778877763 1 12479999999999999999999999999999999999987 799999985421 11
Q ss_pred --h----hhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCCCC
Q 048718 582 --I----QSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHI-RDSLVGTVEKRGI 654 (1118)
Q Consensus 582 --~----~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~-~dt~vg~~~~rgL 654 (1118)
. .-.++.||||.|--...|..+..|-++-.+.. .+++.+..+.++..++.+|+|.+. .+-.+. .+
T Consensus 82 a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~---~gv~~~~a~~~a~~Ll~rLnlperLW~LaPa-----TF 153 (235)
T COG4778 82 AEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA---RGVPREVARAKAADLLTRLNLPERLWSLAPA-----TF 153 (235)
T ss_pred cChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHH---cCCCHHHHHHHHHHHHHHcCCCHHHhcCCCc-----cc
Confidence 1 12356799999988888888888877766543 366777778889999999999754 333333 49
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEe
Q 048718 655 SGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLA 728 (1118)
Q Consensus 655 SGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~ 728 (1118)
||||+|||.|||.++.|-+||+|||||+.||..++.-++++|++-+..|..+|=|-||-+. -...+||++-+.
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeev-re~vadR~~~~~ 226 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEV-REAVADRLLDVS 226 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHH-HHHHhhheeecc
Confidence 9999999999999999999999999999999999999999999887889999999999653 356788887764
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=1.7e-27 Score=262.35 Aligned_cols=198 Identities=23% Similarity=0.328 Sum_probs=153.7
Q ss_pred cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHH-----cCCCC---CC-----------ceeEEEECCEecCh----
Q 048718 526 NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALK-----GRVPG---CI-----------MSGTILVNGKVASI---- 582 (1118)
Q Consensus 526 ~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLa-----Gl~~~---~~-----------~sG~I~inG~~~~~---- 582 (1118)
..+-|+|||..|+.|++++|.|+||||||||++.+. ..... .+ ..--|.++..++..
T Consensus 7 ~~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs 86 (261)
T cd03271 7 RENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRS 86 (261)
T ss_pred chhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCC
Confidence 346799999999999999999999999999998552 11000 01 11246666654321
Q ss_pred ---------hhhc----------------CeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC
Q 048718 583 ---------QSYK----------------RIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLG 637 (1118)
Q Consensus 583 ---------~~~r----------------~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lg 637 (1118)
...| ..+.|..++...+..|||.|++.|..... . ..++.++++.+|
T Consensus 87 ~~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~------~---~~~~~~~L~~vg 157 (261)
T cd03271 87 NPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP------K---IARKLQTLCDVG 157 (261)
T ss_pred cHHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh------h---HHHHHHHHHHcC
Confidence 0011 12567777766678899999999876532 1 234678999999
Q ss_pred CCc-cccccccCccCCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCC
Q 048718 638 LQH-IRDSLVGTVEKRGISGGQRKRVNVGLEMVME---PSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQP 713 (1118)
Q Consensus 638 L~~-~~dt~vg~~~~rgLSGGERQRVsIArALl~~---P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~ 713 (1118)
|.+ ..+..+.+ |||||||||.||++|+.+ |+++||||||+|||+.....+++.|+++.++|.|||+++|++
T Consensus 158 L~~l~l~~~~~~-----LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~ 232 (261)
T cd03271 158 LGYIKLGQPATT-----LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNL 232 (261)
T ss_pred CchhhhcCcccc-----CCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 987 46666655 999999999999999996 799999999999999999999999999988899999999998
Q ss_pred cHHHHhccCcEEEEe-----cCcEEEEecCh
Q 048718 714 SYALFRMFDDLILLA-----KGGVIVYHGPV 739 (1118)
Q Consensus 714 ~~~i~~~~D~vivL~-----~GG~iv~~G~~ 739 (1118)
+. + +.+|++++|. +||++++.|++
T Consensus 233 ~~-i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 233 DV-I-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HH-H-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 75 3 5799999994 56899999874
No 371
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=1.4e-26 Score=276.17 Aligned_cols=204 Identities=27% Similarity=0.396 Sum_probs=168.1
Q ss_pred ceEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeE
Q 048718 510 TIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRII 589 (1118)
Q Consensus 510 ~~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~I 589 (1118)
...++++|+++.|.++ +.+++++||.|.+|+.+||+||||+|||||||+|+|... +.+|+|.+.-. -.|
T Consensus 319 ~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~--~~~G~v~~g~~--------v~i 387 (530)
T COG0488 319 KLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG--PLSGTVKVGET--------VKI 387 (530)
T ss_pred CeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc--cCCceEEeCCc--------eEE
Confidence 4579999999999543 789999999999999999999999999999999999987 56999987532 358
Q ss_pred EEEcCCC-CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHHH
Q 048718 590 GFVPQDD-IVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH-IRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 590 gyV~Qd~-~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~-~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
||..|+. .+.+..|+.|++.-... ... +..+...|..|++.. ...++|+. ||||||.||.+|+.
T Consensus 388 gyf~Q~~~~l~~~~t~~d~l~~~~~-----~~~----e~~~r~~L~~f~F~~~~~~~~v~~-----LSGGEk~Rl~La~l 453 (530)
T COG0488 388 GYFDQHRDELDPDKTVLEELSEGFP-----DGD----EQEVRAYLGRFGFTGEDQEKPVGV-----LSGGEKARLLLAKL 453 (530)
T ss_pred EEEEehhhhcCccCcHHHHHHhhCc-----ccc----HHHHHHHHHHcCCChHHHhCchhh-----cCHhHHHHHHHHHH
Confidence 9999986 44577899999875421 111 345788999999964 45677766 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 668 MVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 668 Ll~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
|+.+|.+|||||||+.||..+...+.++|... .-|||+||||..+ +-+.+++++++.+ +...+.|..++..
T Consensus 454 l~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~F-l~~va~~i~~~~~-~~~~~~g~y~~y~ 524 (530)
T COG0488 454 LLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRYF-LDRVATRIWLVED-KVEEFEGGYEDYL 524 (530)
T ss_pred hccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHHH-HHhhcceEEEEcC-ceeEcCCCHHHHH
Confidence 99999999999999999999999999988765 4599999999876 6788999999975 4445557766544
No 372
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.94 E-value=3.1e-27 Score=250.27 Aligned_cols=168 Identities=17% Similarity=0.255 Sum_probs=132.7
Q ss_pred eeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-------CceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCC
Q 048718 531 RSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC-------IMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLT 603 (1118)
Q Consensus 531 ~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~-------~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LT 603 (1118)
+++++++.+| +++|+|||||||||||++|+|+..+. ...|++.++|.+......++.|+||||++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 5789999999 99999999999999999999987421 22457888887653333457899999998776
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeC
Q 048718 604 VEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMV----MEPSLLILDE 679 (1118)
Q Consensus 604 V~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl----~~P~lLlLDE 679 (1118)
|.. . . ..+++++++. .+..++.+.+ |||||||||+||++|+ .+|++++|||
T Consensus 89 ------~~~--~-----~----~~~~~~~l~~---~~~~~~~~~~-----LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YSI--I-----S----QGDVSEIIEA---PGKKVQRLSL-----LSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------eeE--E-----e----hhhHHHHHhC---CCccccchhh-----cCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 111 0 0 1245666666 4445666654 9999999999999997 4679999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCc
Q 048718 680 PTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGG 731 (1118)
Q Consensus 680 PTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG 731 (1118)
||+|||+.....+.+.|+++++ +.|||++||+++. .+.+|+++.+.+.+
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~~--~~~~d~v~~~~~~~ 192 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKGT--MEAADRLYGVTMQE 192 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHH--HhhcceEEEEEecc
Confidence 9999999999999999998865 6899999999874 36899999997653
No 373
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.94 E-value=1.1e-25 Score=263.42 Aligned_cols=214 Identities=28% Similarity=0.442 Sum_probs=178.8
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh----hhhc
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI----QSYK 586 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r 586 (1118)
..+++++++.. ..++|+||++++||+++|-|-=|||+|-|+++|.|..+ +.+|+|.++|+++.. ...+
T Consensus 262 ~~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~ 333 (500)
T COG1129 262 PVLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIK 333 (500)
T ss_pred cEEEEecCCCC------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHH
Confidence 45677777642 26899999999999999999999999999999999776 579999999998643 2456
Q ss_pred CeEEEEcCC---CCCCCCCCHHHHHHHHHhhccC-C-CCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHH
Q 048718 587 RIIGFVPQD---DIVHGNLTVEENLWFSARCRLS-A-DLPKAEKVLVVERVIESLGLQH-IRDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 587 ~~IgyV~Qd---~~l~~~LTV~EnL~f~a~lr~~-~-~~~~~~~~~~v~~lL~~lgL~~-~~dt~vg~~~~rgLSGGERQ 660 (1118)
..|+|||+| ..++..++|.+|+.++...+.. . -+.....++.++++++.|++.. ..+..+++ ||||.+|
T Consensus 334 ~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~-----LSGGNQQ 408 (500)
T COG1129 334 AGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGT-----LSGGNQQ 408 (500)
T ss_pred cCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhc-----CCchhhh
Confidence 789999987 5688899999999988322211 1 2445555667899999999853 34566665 9999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecCh
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPV 739 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~ 739 (1118)
+|.|||.|..+|+||||||||+|.|.-++.+|.++|++++.+|++||++|.++.+ +..++|||+||.+ |+++..-+.
T Consensus 409 KVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpE-ll~~~DRIlVm~~-Gri~~e~~~ 485 (500)
T COG1129 409 KVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPE-LLGLSDRILVMRE-GRIVGELDR 485 (500)
T ss_pred hHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHH-HHhhCCEEEEEEC-CEEEEEecc
Confidence 9999999999999999999999999999999999999999999999999999875 6689999999986 688764433
No 374
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=6.4e-26 Score=246.00 Aligned_cols=189 Identities=17% Similarity=0.288 Sum_probs=132.3
Q ss_pred cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--------------CCcee--------EEEECCEec---
Q 048718 526 NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPG--------------CIMSG--------TILVNGKVA--- 580 (1118)
Q Consensus 526 ~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~--------------~~~sG--------~I~inG~~~--- 580 (1118)
++.++++++ |++++|+|||||||||||++|++++.. .+.+| +|.+++.+.
T Consensus 14 ~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~ 88 (243)
T cd03272 14 DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFP 88 (243)
T ss_pred cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccC
Confidence 456888886 789999999999999999999843210 01234 555555221
Q ss_pred ---ChhhhcCeEEEEcCCCCCCC-CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 048718 581 ---SIQSYKRIIGFVPQDDIVHG-NLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISG 656 (1118)
Q Consensus 581 ---~~~~~r~~IgyV~Qd~~l~~-~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSG 656 (1118)
.....++.++|++|+..+++ ..|..|...+.............. ....++.+.+++.+..+..+. .|||
T Consensus 89 ~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~--~~qg~i~~l~~l~~~~~~~~~-----~lS~ 161 (243)
T cd03272 89 IDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYI--VPQGKINSLTNMKQDEQQEMQ-----QLSG 161 (243)
T ss_pred CCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEE--EEcCchHHhhhcccccccccc-----ccCH
Confidence 11235677999999888877 467777666654432221100000 001123334555544555554 4999
Q ss_pred HHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEec
Q 048718 657 GQRKRVNVGLEMVM----EPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAK 729 (1118)
Q Consensus 657 GERQRVsIArALl~----~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~ 729 (1118)
|||||++||++|+. +|+++++||||+|||+.++..+.+.|+++.+ +.++|+++|+++ +.+.+|++++|.-
T Consensus 162 G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~~--~~~~~d~i~~l~~ 235 (243)
T cd03272 162 GQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRPE--LLEVADKFYGVKF 235 (243)
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHhhCCEEEEEEE
Confidence 99999999999974 5899999999999999999999999998865 788888888854 5689999999863
No 375
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.92 E-value=3.5e-26 Score=232.26 Aligned_cols=207 Identities=24% Similarity=0.376 Sum_probs=173.2
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcCe
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKRI 588 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~ 588 (1118)
.+.++||...- -|-.+|+.+..||++-++|||||||||||-.++|+++ .+|+|.++|.++.. .++.+.
T Consensus 3 l~qln~v~~~t------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~---~sGsi~~~G~~l~~~~~~eLArh 73 (248)
T COG4138 3 LMQLNDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GSGSIQFAGQPLEAWSATELARH 73 (248)
T ss_pred eeeeccccccc------cccccccccccceEEEEECCCCccHHHHHHHHhCCCC---CCceEEECCcchhHHhHhHHHHH
Confidence 35677776532 4678999999999999999999999999999999996 69999999998642 345555
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 048718 589 IGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEM 668 (1118)
Q Consensus 589 IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArAL 668 (1118)
-+|+.|+..-...|-|...|.+.- +..+....++++...++|.+...+.+.. |||||-|||-+|...
T Consensus 74 RAYLsQqq~p~f~mpV~~YL~L~q--------P~~~~a~~i~~i~~~L~l~DKL~Rs~~q-----LSGGEWQRVRLAav~ 140 (248)
T COG4138 74 RAYLSQQQTPPFAMPVWHYLTLHQ--------PDKTRTELLNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVV 140 (248)
T ss_pred HHHHhhccCCcchhhhhhhhhhcC--------chHHHHHHHHHHHhhhcccchhhhhhhh-----cCcccceeeEEeEEE
Confidence 689888766555788999887542 3344556688899999999888877765 999999999999877
Q ss_pred hh-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhh
Q 048718 669 VM-------EPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKK 741 (1118)
Q Consensus 669 l~-------~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~ 741 (1118)
+. ..++|+||||.++||......+-+.|.++...|.+|||+.||.+-. .+.+|++++|.+ |+++..|..++
T Consensus 141 LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhT-LrhA~~~wLL~r-G~l~~~G~~~e 218 (248)
T COG4138 141 LQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHT-LRHAHRAWLLKR-GKLLASGRREE 218 (248)
T ss_pred EEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhH-HHHHHHHHHHhc-CeEEeecchhh
Confidence 64 3469999999999999999999999999999999999999999976 488999999987 68999999887
Q ss_pred H
Q 048718 742 V 742 (1118)
Q Consensus 742 l 742 (1118)
+
T Consensus 219 V 219 (248)
T COG4138 219 V 219 (248)
T ss_pred h
Confidence 6
No 376
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.92 E-value=9.4e-25 Score=233.52 Aligned_cols=193 Identities=19% Similarity=0.186 Sum_probs=133.0
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEe-CCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCE--ecChhhhcCe
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLS-PGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGK--VASIQSYKRI 588 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~-~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~--~~~~~~~r~~ 588 (1118)
.|+++|+. +|.+ . ++|+|... +|++++|+|||||||||||++|++.+.+ +..+....+.. .+.....+..
T Consensus 5 ~i~l~nf~-~y~~--~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g-~~~~~~~~~~~~~~~~~~~~~~~ 77 (213)
T cd03279 5 KLELKNFG-PFRE--E---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYG-KTPRYGRQENLRSVFAPGEDTAE 77 (213)
T ss_pred EEEEECCc-CcCC--c---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEec-CccccccchhHHHHhcCCCccEE
Confidence 57788876 5532 2 45666543 5899999999999999999999965422 23333333210 1112234567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 048718 589 IGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEM 668 (1118)
Q Consensus 589 IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArAL 668 (1118)
|++++|++.... ++.... ++...+..+.+ .++..++.+..+..+++ ||||||||++||++|
T Consensus 78 v~~~f~~~~~~~--~~~r~~----------gl~~~~~~~~~--~l~~g~l~~~l~~~~~~-----lS~G~~~r~~la~al 138 (213)
T cd03279 78 VSFTFQLGGKKY--RVERSR----------GLDYDQFTRIV--LLPQGEFDRFLARPVST-----LSGGETFLASLSLAL 138 (213)
T ss_pred EEEEEEECCeEE--EEEEec----------CCCHHHHHHhh--hhhhcchHHHhcCCccc-----cCHHHHHHHHHHHHH
Confidence 999999864321 121111 22222211111 23444455556666654 999999999999999
Q ss_pred hh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCc
Q 048718 669 VM----------EPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGG 731 (1118)
Q Consensus 669 l~----------~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG 731 (1118)
+. +|+++||||||++||+.+...+.+.|++++++|.|+|++||+++. +...+|+++++.+||
T Consensus 139 ~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~-~~~~~~~i~~~~~~~ 210 (213)
T cd03279 139 ALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEEL-KERIPQRLEVIKTPG 210 (213)
T ss_pred HhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHH-HHhhCcEEEEEecCC
Confidence 85 578999999999999999999999999988779999999999875 456778888887765
No 377
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.92 E-value=2.5e-25 Score=243.43 Aligned_cols=179 Identities=20% Similarity=0.220 Sum_probs=135.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCE-ec-Ch----hhhcCeEEEEcCCC---------CCCCCCCH
Q 048718 540 GRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGK-VA-SI----QSYKRIIGFVPQDD---------IVHGNLTV 604 (1118)
Q Consensus 540 GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~-~~-~~----~~~r~~IgyV~Qd~---------~l~~~LTV 604 (1118)
..+++|+|||||||||||++|++++.+ ...|++.+.|. ++ .. ...+..|++++|++ .+.+.+||
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~-~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGI-TNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcc-cccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 459999999999999999999999863 12468887775 21 11 11234799999985 34567899
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC--------------------ccccccccCccCCCCCHHHHHHHHH
Q 048718 605 EENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ--------------------HIRDSLVGTVEKRGISGGQRKRVNV 664 (1118)
Q Consensus 605 ~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~--------------------~~~dt~vg~~~~rgLSGGERQRVsI 664 (1118)
.+++.++...+...+ .+....+.+.++++.+||. +..+.++ +.||||||||++|
T Consensus 104 ~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~-----~~lS~G~~qr~~l 177 (251)
T cd03273 104 TRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESL-----TELSGGQRSLVAL 177 (251)
T ss_pred EEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccc-----cccCHHHHHHHHH
Confidence 998876532211000 0112235688899999986 2233444 4599999999999
Q ss_pred HHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEe
Q 048718 665 GLEMV----MEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLA 728 (1118)
Q Consensus 665 ArALl----~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~ 728 (1118)
|++|+ .+|+++++||||++||+..+..+.+.|+++. +|.++|++||+++ +.+.+|+++-+.
T Consensus 178 a~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~~--~~~~~d~v~~~~ 242 (251)
T cd03273 178 SLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKEG--MFNNANVLFRTR 242 (251)
T ss_pred HHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCHH--HHHhCCEEEEEE
Confidence 99998 5789999999999999999999999999885 5889999999953 557899998775
No 378
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.92 E-value=2.1e-26 Score=246.66 Aligned_cols=189 Identities=14% Similarity=0.238 Sum_probs=141.4
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhc-CeEE
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYK-RIIG 590 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r-~~Ig 590 (1118)
.|+++|.. .| +++.+|+++++ ++++|+||||||||||+++|.-. +|.+. ...+ +.++
T Consensus 5 ~l~l~nfk-~~--~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~------------~G~~~--~~~~~~~i~ 62 (212)
T cd03274 5 KLVLENFK-SY--AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV------------FGFRA--SKMRQKKLS 62 (212)
T ss_pred EEEEECcc-cC--CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH------------hccCH--HHhhhhhHH
Confidence 35666664 55 35679999987 89999999999999999999732 23221 1222 5689
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhcc-----CCCCCHHHHHH--HHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRL-----SADLPKAEKVL--VVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVN 663 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~-----~~~~~~~~~~~--~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVs 663 (1118)
+++|+..+++.+|+.|++.+...... ..+........ ..+++++.++|.+..++.++. ||+|||||++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~-----lS~G~~~r~~ 137 (212)
T cd03274 63 DLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISN-----LSGGEKTLSS 137 (212)
T ss_pred HHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhh-----cCHHHHHHHH
Confidence 99999988999999988766543210 00111111000 125666778888777877765 9999999999
Q ss_pred HHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecC
Q 048718 664 VGLEMVM----EPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKG 730 (1118)
Q Consensus 664 IArALl~----~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~G 730 (1118)
||++++. +|++++|||||+|||+.++..+.+.|++++ ++.|+|++||+++ +.+.+|++++|...
T Consensus 138 la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs~~~~--~~~~~d~v~~~~~~ 205 (212)
T cd03274 138 LALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT-KNAQFIVISLRNN--MFELADRLVGIYKT 205 (212)
T ss_pred HHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECcHH--HHHhCCEEEEEEec
Confidence 9999974 579999999999999999999999999975 4678899999954 56899999999753
No 379
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.91 E-value=1.1e-24 Score=232.05 Aligned_cols=167 Identities=22% Similarity=0.323 Sum_probs=127.3
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHH----cCCCCCCceeEEEECCEecChhhhcCeEEEEcCCC-----CCCCCCCH
Q 048718 534 TGKLSPGRVSAVMGPSGAGKTTFLSALK----GRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDD-----IVHGNLTV 604 (1118)
Q Consensus 534 Sl~I~~GEi~aIlGpnGSGKSTLLkiLa----Gl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~-----~l~~~LTV 604 (1118)
++++.+| +++|+|||||||||||++|. |... +..|.+..+...+.....+..|++++|++ .+...+||
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~--~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~ 93 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP--PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAI 93 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC--cccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence 4556677 99999999999999999995 7765 34565542221122233456799999987 44455689
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH------HHHHHHHhhCCCEEEEe
Q 048718 605 EENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKR------VNVGLEMVMEPSLLILD 678 (1118)
Q Consensus 605 ~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQR------VsIArALl~~P~lLlLD 678 (1118)
.||+.+.. .++ +++.+ +..+. .||+||+|| ++||++|+.+|+++++|
T Consensus 94 ~~~~~~~~---------~~~----~~~~~---------~~~~~-----~LS~G~~~~~~la~rlala~al~~~p~illlD 146 (204)
T cd03240 94 LENVIFCH---------QGE----SNWPL---------LDMRG-----RCSGGEKVLASLIIRLALAETFGSNCGILALD 146 (204)
T ss_pred hhceeeec---------hHH----HHHHH---------hcCcc-----ccCccHHHHHHHHHHHHHHHHhccCCCEEEEc
Confidence 99886531 111 22232 34444 499999996 78999999999999999
Q ss_pred CCCCCCCHHHHH-HHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcE
Q 048718 679 EPTSGLDSSSSQ-LLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGV 732 (1118)
Q Consensus 679 EPTsGLD~~sa~-~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~ 732 (1118)
|||++||+..+. .+.+.|++++++ |.+||++||+++. ...+|+++.|.++|+
T Consensus 147 EP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~--~~~~d~i~~l~~~~~ 200 (204)
T cd03240 147 EPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEEL--VDAADHIYRVEKDGR 200 (204)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHH--HhhCCEEEEEeeCCC
Confidence 999999999999 999999998866 8899999999764 367999999988764
No 380
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.91 E-value=1.1e-23 Score=274.36 Aligned_cols=217 Identities=20% Similarity=0.296 Sum_probs=156.9
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHH---------HHHcCCCCC---------------
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLS---------ALKGRVPGC--------------- 567 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLk---------iLaGl~~~~--------------- 567 (1118)
.+++++++ ...|+|+|++|++||+++|.|+||||||||++ .|.|...+.
T Consensus 600 ~L~l~~~~-------~~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKAT-------KHNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEeccc-------cCCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 46677764 23799999999999999999999999999999 455542210
Q ss_pred -------CceeEEEECCEecChh---------hhc--CeEEEEcCC-------------------C--------------
Q 048718 568 -------IMSGTILVNGKVASIQ---------SYK--RIIGFVPQD-------------------D-------------- 596 (1118)
Q Consensus 568 -------~~sG~I~inG~~~~~~---------~~r--~~IgyV~Qd-------------------~-------------- 596 (1118)
+-++.++|-|.--..+ +.+ ....|.|+. +
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 0111233222100000 000 011222221 0
Q ss_pred -----CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHh-
Q 048718 597 -----IVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHI-RDSLVGTVEKRGISGGQRKRVNVGLEMV- 669 (1118)
Q Consensus 597 -----~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~-~dt~vg~~~~rgLSGGERQRVsIArALl- 669 (1118)
..+..+||.|+|.++..-.........+..+++ ++|+.+||.+. .+..+.+ |||||||||+||++|+
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~t-----LSGGE~QRV~LAraL~~ 826 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSS-----LSGGEIQRLKLAYELLA 826 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcccc-----CCHHHHHHHHHHHHHhh
Confidence 245678999999987653221112233344456 48899999876 6777765 9999999999999998
Q ss_pred --hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEe-----cCcEEEEecChhhH
Q 048718 670 --MEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLA-----KGGVIVYHGPVKKV 742 (1118)
Q Consensus 670 --~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~-----~GG~iv~~G~~~~l 742 (1118)
.+|++|||||||+|||+.+...+++.|++++++|.|||+++|+++. + +.+|++++|. ++|++++.|+++++
T Consensus 827 ~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~-i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel 904 (1809)
T PRK00635 827 PSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHV-V-KVADYVLELGPEGGNLGGYLLASCSPEEL 904 (1809)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEccCCCCCCCEEEEeCCHHHH
Confidence 6999999999999999999999999999998889999999999875 4 7999999995 35799999999886
Q ss_pred H
Q 048718 743 E 743 (1118)
Q Consensus 743 ~ 743 (1118)
.
T Consensus 905 ~ 905 (1809)
T PRK00635 905 I 905 (1809)
T ss_pred H
Confidence 4
No 381
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.91 E-value=2.8e-23 Score=261.13 Aligned_cols=126 Identities=32% Similarity=0.419 Sum_probs=107.2
Q ss_pred CCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHHHHhhCC---CEEEE
Q 048718 602 LTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH-IRDSLVGTVEKRGISGGQRKRVNVGLEMVMEP---SLLIL 677 (1118)
Q Consensus 602 LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~-~~dt~vg~~~~rgLSGGERQRVsIArALl~~P---~lLlL 677 (1118)
|||.|++.|...+. + .....++|+.+||.+ ..+..+.+ |||||||||.||++|+.+| +|+||
T Consensus 792 ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~~~~t-----LSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQPATT-----LSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccCCccc-----CCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78999998875432 1 123467899999986 46776665 9999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEe-----cCcEEEEecChhhHH
Q 048718 678 DEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLA-----KGGVIVYHGPVKKVE 743 (1118)
Q Consensus 678 DEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~-----~GG~iv~~G~~~~l~ 743 (1118)
||||+|||+.....+++.|+++.++|.|||+++|+++. + +.+|++++|. ++|++++.|+++++.
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~-i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDV-I-KTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-H-HhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 99999999999999999999998789999999999875 3 5799999994 568999999998764
No 382
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.90 E-value=2.3e-23 Score=247.97 Aligned_cols=198 Identities=26% Similarity=0.418 Sum_probs=159.7
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEE
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIG 590 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 590 (1118)
..|.++||++.-+. ++..|++.++.|++||-+.|.||||||||||+|+|+|+.+ .-+|.|.+- -...+-
T Consensus 391 ~~i~~~nl~l~~p~-~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP--~g~G~I~~P--------~~~~~l 459 (604)
T COG4178 391 HGITLENLSLRTPD-GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWP--WGSGRISMP--------ADSALL 459 (604)
T ss_pred ceeEEeeeeEECCC-CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCc--cCCCceecC--------CCCceE
Confidence 56999999999864 3589999999999999999999999999999999999998 346776542 123589
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccC-ccCCCCCHHHHHHHHHHHHHh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGT-VEKRGISGGQRKRVNVGLEMV 669 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~-~~~rgLSGGERQRVsIArALl 669 (1118)
|+||.|.+... |.+|-|.|+... ...+++ .+.++|..+||.+..++.-+. .-.+.||+||||||++||.|+
T Consensus 460 flpQ~PY~p~G-tLre~l~YP~~~---~~~~d~----~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL 531 (604)
T COG4178 460 FLPQRPYLPQG-TLREALCYPNAA---PDFSDA----ELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLL 531 (604)
T ss_pred EecCCCCCCCc-cHHHHHhCCCCC---CCCChH----HHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHH
Confidence 99999988766 999999886432 123333 367889999998876654322 123569999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecC
Q 048718 670 MEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKG 730 (1118)
Q Consensus 670 ~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~G 730 (1118)
++|++++|||.|++||+.++..+.+.|++.. .+.|||.|.|++... .+.++.+-+.+.
T Consensus 532 ~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~tl~--~~h~~~l~l~~~ 589 (604)
T COG4178 532 HKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPTLW--NFHSRQLELLDD 589 (604)
T ss_pred cCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchhhH--HHHhhheeeccc
Confidence 9999999999999999999999999997642 489999999998754 566776666543
No 383
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.90 E-value=7.1e-23 Score=235.86 Aligned_cols=223 Identities=22% Similarity=0.365 Sum_probs=186.4
Q ss_pred ceEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEec----Chh-h
Q 048718 510 TIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVA----SIQ-S 584 (1118)
Q Consensus 510 ~~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~----~~~-~ 584 (1118)
...++++||++.-. .+...+++|||+|+.||+++|.|-.|-|-+-|+.+|+|+.+ +.+|+|.++|+++ +.. .
T Consensus 255 ~~vL~V~~L~v~~~-~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~--~~~G~I~l~G~~v~~~~~~~~~ 331 (501)
T COG3845 255 EVVLEVEDLSVKDR-RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK--PASGRILLNGKDVLGRLSPRER 331 (501)
T ss_pred CeEEEEeeeEeecC-CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc--cCCceEEECCEeccccCCHHHH
Confidence 45799999998653 23578999999999999999999999999999999999997 4569999999986 232 3
Q ss_pred hcCeEEEEcCCC---CCCCCCCHHHHHHHHHhhccC----CCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCH
Q 048718 585 YKRIIGFVPQDD---IVHGNLTVEENLWFSARCRLS----ADLPKAEKVLVVERVIESLGLQH-IRDSLVGTVEKRGISG 656 (1118)
Q Consensus 585 ~r~~IgyV~Qd~---~l~~~LTV~EnL~f~a~lr~~----~~~~~~~~~~~v~~lL~~lgL~~-~~dt~vg~~~~rgLSG 656 (1118)
.+..++|||+|- .+.+.+|+.||+.+....+.+ .-.......+...++++.+++.. -.+.++ +.|||
T Consensus 332 r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a-----~~LSG 406 (501)
T COG3845 332 RRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPA-----RSLSG 406 (501)
T ss_pred HhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcch-----hhcCC
Confidence 456799999985 466789999999887543211 12345566778899999998862 233334 45999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEe
Q 048718 657 GQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYH 736 (1118)
Q Consensus 657 GERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~ 736 (1118)
|.+||+-+||+|..+|++|+..+||.|||..+.+.|.+.|.++++.|+.|++++.++++ ++.++|++.||.+ |+++..
T Consensus 407 GNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDE-il~lsDrIaVi~~-Gri~~~ 484 (501)
T COG3845 407 GNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDE-ILELSDRIAVIYE-GRIVGI 484 (501)
T ss_pred cceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHH-HHHhhheeeeeeC-Cceecc
Confidence 99999999999999999999999999999999999999999999999999999999985 6799999999986 699888
Q ss_pred cChhhH
Q 048718 737 GPVKKV 742 (1118)
Q Consensus 737 G~~~~l 742 (1118)
.++++.
T Consensus 485 ~~~~~~ 490 (501)
T COG3845 485 VPPEEA 490 (501)
T ss_pred cccccC
Confidence 777653
No 384
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.90 E-value=5.2e-24 Score=237.78 Aligned_cols=207 Identities=21% Similarity=0.319 Sum_probs=167.7
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcC
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKR 587 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~ 587 (1118)
..++++|+.|.|... .-=+..||++|++||++-|+|.||||||||+++|.|++. |++|+|++||++++. .++|+
T Consensus 321 ~~lelrnvrfay~~~-~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~--PqsG~I~ldg~pV~~e~ledYR~ 397 (546)
T COG4615 321 KTLELRNVRFAYQDN-AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ--PQSGEILLDGKPVSAEQLEDYRK 397 (546)
T ss_pred cceeeeeeeeccCcc-cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC--CCCCceeECCccCCCCCHHHHHH
Confidence 469999999999643 245789999999999999999999999999999999998 799999999998864 46888
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
-++-||-|..+|+.+=- ++... ....++..++++.|.|...-.-|+-..-.||.|||||+++-.|
T Consensus 398 LfSavFsDyhLF~~ll~------------~e~~a---s~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~A 462 (546)
T COG4615 398 LFSAVFSDYHLFDQLLG------------PEGKA---SPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLA 462 (546)
T ss_pred HHHHHhhhHhhhHhhhC------------CccCC---ChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHH
Confidence 88989998888865311 11111 1234778888888876543333333334699999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecC
Q 048718 668 MVMEPSLLILDEPTSGLDSSSSQLLLRALRRE-ALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGP 738 (1118)
Q Consensus 668 Ll~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~l-a~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~ 738 (1118)
|+-+.+|+++||=-+.-||.-++.+.+.+--+ .+.|+||+.||||-. -|..+||++.+.+ |++++.-+
T Consensus 463 llEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~--YF~~ADrll~~~~-G~~~e~tg 531 (546)
T COG4615 463 LLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH--YFIHADRLLEMRN-GQLSELTG 531 (546)
T ss_pred HHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCch--hhhhHHHHHHHhc-Cceeeccc
Confidence 99999999999999999999999999876554 456999999999965 5789999999976 68877543
No 385
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.88 E-value=5.4e-23 Score=237.57 Aligned_cols=207 Identities=19% Similarity=0.289 Sum_probs=162.5
Q ss_pred CceEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCe
Q 048718 509 PTIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRI 588 (1118)
Q Consensus 509 ~~~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~ 588 (1118)
+...+.++|++|.|.++ ..++++++|-|..++.+|+|||||+|||||||++.|.+. |..|.|.-.-. -.
T Consensus 386 p~pvi~~~nv~F~y~~~-~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~~H--------~~ 454 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDN-PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRHSH--------NK 454 (614)
T ss_pred CCCeEEEeccccCCCCc-chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--ccccccccccc--------cc
Confidence 34568899999999643 379999999999999999999999999999999999998 67888754321 12
Q ss_pred EEEEcCC--CCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHH
Q 048718 589 IGFVPQD--DIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHI-RDSLVGTVEKRGISGGQRKRVNVG 665 (1118)
Q Consensus 589 IgyV~Qd--~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~-~dt~vg~~~~rgLSGGERQRVsIA 665 (1118)
+++.-|+ +.+--+.++.|++.-... . ....+.+..+|.++||... .+.++. .||+|||+||..|
T Consensus 455 ~~~y~Qh~~e~ldl~~s~le~~~~~~~----~----~~~~e~~r~ilgrfgLtgd~q~~p~~-----~LS~Gqr~rVlFa 521 (614)
T KOG0927|consen 455 LPRYNQHLAEQLDLDKSSLEFMMPKFP----D----EKELEEMRSILGRFGLTGDAQVVPMS-----QLSDGQRRRVLFA 521 (614)
T ss_pred chhhhhhhHhhcCcchhHHHHHHHhcc----c----cchHHHHHHHHHHhCCCccccccchh-----hcccccchhHHHH
Confidence 3444443 233335677777653321 1 1223457889999999844 445554 4999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 666 LEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 666 rALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
+.++..|.||+|||||+|||..+...+.++|.+. .-+||+++||... +-+.++++.+..+++...+.|....-+
T Consensus 522 ~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfrl-I~qVaeEi~~c~~~~~~~~~G~i~~yk 595 (614)
T KOG0927|consen 522 RLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFRL-ISQVAEEIWVCENGTVTKWDGDIEIYK 595 (614)
T ss_pred HHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhhH-HHHHHHHhHhhccCceeecCccHHHHH
Confidence 9999999999999999999999999998888764 3479999999875 678999999999888888888865443
No 386
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.88 E-value=8.7e-22 Score=247.40 Aligned_cols=126 Identities=29% Similarity=0.413 Sum_probs=104.9
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHHHHhh---CCCEEE
Q 048718 601 NLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH-IRDSLVGTVEKRGISGGQRKRVNVGLEMVM---EPSLLI 676 (1118)
Q Consensus 601 ~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~-~~dt~vg~~~~rgLSGGERQRVsIArALl~---~P~lLl 676 (1118)
.|||.|.+.|..... . .....++|+.+||.+ ..++.+.+ |||||+|||.||++|+. +|+++|
T Consensus 789 ~~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~~~~t-----LSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQPATT-----LSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcCcccc-----CCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 478888888875432 1 113457889999976 35666655 99999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEe-----cCcEEEEecChhhH
Q 048718 677 LDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLA-----KGGVIVYHGPVKKV 742 (1118)
Q Consensus 677 LDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~-----~GG~iv~~G~~~~l 742 (1118)
|||||+|||+.....+++.|+++.++|.|||+++|+++. + +.+|++++|. +||++++.|+++++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~-i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDV-I-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 999999999999999999999998789999999999874 3 6799999994 56899999998764
No 387
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.87 E-value=1.4e-21 Score=221.71 Aligned_cols=189 Identities=25% Similarity=0.366 Sum_probs=149.4
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEE
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIG 590 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 590 (1118)
..+++.++.++|. ..-|.-=.++|..||+++|+||||-|||||.++|+|.+. |++|+ . ..-+|+
T Consensus 341 ~lv~y~~~~k~~g---~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik--Pdeg~----~-------~~~~vS 404 (591)
T COG1245 341 TLVEYPDLKKTYG---DFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK--PDEGS----E-------EDLKVS 404 (591)
T ss_pred eeeecchheeecC---ceEEEecCCeeecceEEEEECCCCcchHHHHHHHhcccc--CCCCC----C-------ccceEe
Confidence 3456666666663 234555567778899999999999999999999999998 67876 1 123488
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
|=||--.--...||++.|.-......... -...++++-|+|....++.+.+ |||||.|||+||.+|.+
T Consensus 405 yKPQyI~~~~~gtV~~~l~~~~~~~~~~s-------~~~~ei~~pl~l~~i~e~~v~~-----LSGGELQRvaIaa~L~r 472 (591)
T COG1245 405 YKPQYISPDYDGTVEDLLRSAIRSAFGSS-------YFKTEIVKPLNLEDLLERPVDE-----LSGGELQRVAIAAALSR 472 (591)
T ss_pred ecceeecCCCCCcHHHHHHHhhhhhcccc-------hhHHhhcCccchHHHHhccccc-----CCchhHHHHHHHHHhcc
Confidence 88886444456799998876544321111 1245778889999999998876 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEe
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLA 728 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~ 728 (1118)
+++|++||||++-||.+.+..+.+.||+... .++|.+++-||.-.. --+.|+++|..
T Consensus 473 eADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~-dyvsDr~ivF~ 530 (591)
T COG1245 473 EADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMI-DYVSDRLIVFE 530 (591)
T ss_pred ccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehh-hhhhceEEEEe
Confidence 9999999999999999999999999999985 489999999998653 34678888774
No 388
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.85 E-value=1.9e-21 Score=202.46 Aligned_cols=227 Identities=18% Similarity=0.251 Sum_probs=169.6
Q ss_pred EEEEeEEEEEcC--CcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeEEEECCEec---Chhhh
Q 048718 513 VAFKDLTITLKG--KNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC--IMSGTILVNGKVA---SIQSY 585 (1118)
Q Consensus 513 l~~knLs~~~~~--~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~--~~sG~I~inG~~~---~~~~~ 585 (1118)
+.++||+..+.. +...++++||+++..||+-+++|.||||||-..|+|.|..+.. .+.....+++.++ +.++.
T Consensus 4 LDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~R 83 (330)
T COG4170 4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred ccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHh
Confidence 456777777642 3457999999999999999999999999999999999987621 1233445555442 22222
Q ss_pred ----cCeEEEEcCCCC--CCCCCCHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 048718 586 ----KRIIGFVPQDDI--VHGNLTVEENLWFSARCRLSADLPK---AEKVLVVERVIESLGLQHIRDSLVGTVEKRGISG 656 (1118)
Q Consensus 586 ----r~~IgyV~Qd~~--l~~~LTV~EnL~f~a~lr~~~~~~~---~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSG 656 (1118)
.+.|+++||++. +-|.-+|...|.-....++.++.-- .-++.++-++|..+|+.+..|-. ..++.+|--
T Consensus 84 Rk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM--~SYP~ElTe 161 (330)
T COG4170 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIM--RSYPYELTE 161 (330)
T ss_pred hhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHH--HhCcchhcc
Confidence 246899999985 4455555554443322222111100 11344567889999997655432 235566999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEE
Q 048718 657 GQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAKGGVIVY 735 (1118)
Q Consensus 657 GERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~ 735 (1118)
||-|+|.||.|++.+|++||.||||+.+|+.++.+++++|..+.+ +|.||++++||... +-+.+|++-||+- |+.++
T Consensus 162 GE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~-is~W~d~i~VlYC-GQ~~E 239 (330)
T COG4170 162 GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQM-ISQWADKINVLYC-GQTVE 239 (330)
T ss_pred CcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHH-HHHHhhheEEEEe-ccccc
Confidence 999999999999999999999999999999999999999999985 58999999999864 6789999999987 57899
Q ss_pred ecChhhHH
Q 048718 736 HGPVKKVE 743 (1118)
Q Consensus 736 ~G~~~~l~ 743 (1118)
.++.+++.
T Consensus 240 Sa~~e~l~ 247 (330)
T COG4170 240 SAPSEELV 247 (330)
T ss_pred ccchhHHh
Confidence 99988764
No 389
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.85 E-value=5.9e-21 Score=202.63 Aligned_cols=166 Identities=22% Similarity=0.199 Sum_probs=119.9
Q ss_pred eeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEE--CCEec----ChhhhcCeEEEEcCCCCCCCCCC
Q 048718 530 MRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILV--NGKVA----SIQSYKRIIGFVPQDDIVHGNLT 603 (1118)
Q Consensus 530 L~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~i--nG~~~----~~~~~r~~IgyV~Qd~~l~~~LT 603 (1118)
++++++.+.+| +.+|+|||||||||||.+|..... |+... .|... ........|.+++|+..++++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~-----~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~-- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG-----GKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN-- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc-----CCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCC--
Confidence 36677777787 889999999999999999975432 11111 12111 001123458888888766541
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH----hhCCCEEEEeC
Q 048718 604 VEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEM----VMEPSLLILDE 679 (1118)
Q Consensus 604 V~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArAL----l~~P~lLlLDE 679 (1118)
. .....+..++++++. .+..++++++ ||+|||||++||++| +.+|++++|||
T Consensus 84 -----------~-----~~~~~~~~~~~~l~~---~~~~~~~~~~-----lS~G~k~r~~ia~al~~~~~~~p~illlDE 139 (198)
T cd03276 84 -----------P-----LCVLSQDMARSFLTS---NKAAVRDVKT-----LSGGERSFSTVCLLLSLWEVMESPFRCLDE 139 (198)
T ss_pred -----------c-----CCHHHHHHHHHHhcc---ccccCCcccc-----cChhHHHHHHHHHHHHHhcccCCCEEEecC
Confidence 0 001112356677765 5556666655 999999999999999 58999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC---CCEEEEEEcCCcHHHHhccCcEEEEec
Q 048718 680 PTSGLDSSSSQLLLRALRREALE---GVNICTVVHQPSYALFRMFDDLILLAK 729 (1118)
Q Consensus 680 PTsGLD~~sa~~i~~~Lr~la~~---G~TIIvvtHq~~~~i~~~~D~vivL~~ 729 (1118)
||+|||+.++..+.+.|+++..+ +.|||+++|+++.. ..+|+|.+|..
T Consensus 140 P~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i--~~~d~v~~~~~ 190 (198)
T cd03276 140 FDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGL--ASSDDVKVFRM 190 (198)
T ss_pred cccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccccc--ccccceeEEEe
Confidence 99999999999999999988643 35899999999864 34599999865
No 390
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.85 E-value=2e-21 Score=224.64 Aligned_cols=216 Identities=24% Similarity=0.397 Sum_probs=145.7
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChh---hhc-
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQ---SYK- 586 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~---~~r- 586 (1118)
-.+.+.++++++. ++.+++|++|++.+|+-++|+|+|||||||+|++|+|...|.|..=.++.-.+..... ...
T Consensus 74 ~dvk~~sls~s~~--g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~ 151 (614)
T KOG0927|consen 74 RDVKIESLSLSFH--GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQA 151 (614)
T ss_pred ccceeeeeeeccC--CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHH
Confidence 4578999999994 4789999999999999999999999999999999999987654433333322221110 000
Q ss_pred ---------CeEEEEcCCCCCC-CC--CCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-CccccccccCccCCC
Q 048718 587 ---------RIIGFVPQDDIVH-GN--LTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGL-QHIRDSLVGTVEKRG 653 (1118)
Q Consensus 587 ---------~~IgyV~Qd~~l~-~~--LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL-~~~~dt~vg~~~~rg 653 (1118)
.++.|.-++-... +. .--.+++.- +. ..+..+....++..+|..+|. .+..++.+.+
T Consensus 152 v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~----r~-~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~----- 221 (614)
T KOG0927|consen 152 VVMETDHERKRLEYLAEDLAQACDDKEKDELDELYE----RL-DEMDNDTFEAKAAKILHGLGFLSEMQDKKVKD----- 221 (614)
T ss_pred HhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHH----HH-HhhCchhHHHHHHHHHHhcCCCHhHHHHHhhc-----
Confidence 0111110000000 00 000001100 00 011222233445566666654 5667777765
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEEcCCcHHHHhccCcEEEEecCcE
Q 048718 654 ISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGV-NICTVVHQPSYALFRMFDDLILLAKGGV 732 (1118)
Q Consensus 654 LSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~-TIIvvtHq~~~~i~~~~D~vivL~~GG~ 732 (1118)
||||+|.|+++||+|..+|++|+|||||++||..+..-+-+.|.+. .. ++++++|.-+. +-..|.+|+-|..+.-
T Consensus 222 ~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~---d~~~lVi~sh~QDf-ln~vCT~Ii~l~~kkl 297 (614)
T KOG0927|consen 222 LSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY---DRIILVIVSHSQDF-LNGVCTNIIHLDNKKL 297 (614)
T ss_pred cCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc---cCceEEEEecchhh-hhhHhhhhheecccce
Confidence 9999999999999999999999999999999999988887777554 44 89999998765 6688999999987544
Q ss_pred EEEecChhhH
Q 048718 733 IVYHGPVKKV 742 (1118)
Q Consensus 733 iv~~G~~~~l 742 (1118)
+.|.|+.+..
T Consensus 298 ~~y~Gnydqy 307 (614)
T KOG0927|consen 298 IYYEGNYDQY 307 (614)
T ss_pred eeecCCHHHH
Confidence 7788887653
No 391
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.85 E-value=1.7e-21 Score=213.15 Aligned_cols=180 Identities=14% Similarity=0.217 Sum_probs=120.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEe--cC------h--hhhcCeEEEEcCCCCC-CCCCCHHHHHH
Q 048718 541 RVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKV--AS------I--QSYKRIIGFVPQDDIV-HGNLTVEENLW 609 (1118)
Q Consensus 541 Ei~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~--~~------~--~~~r~~IgyV~Qd~~l-~~~LTV~EnL~ 609 (1118)
.+++|+|||||||||||++|++... +..|++..++.. +. . ....-.+.|..|++.. .-..++.+...
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~--~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~ 100 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLG--EKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSS 100 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC--CCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCce
Confidence 3999999999999999999999885 335666544321 00 0 0112234444444321 10111111110
Q ss_pred HHHhhccCC-CCCHHHHHHHHHHHHHHcCCCccccc---------cccCc--------cCCCCCHHHHHHHHHHHHHhhC
Q 048718 610 FSARCRLSA-DLPKAEKVLVVERVIESLGLQHIRDS---------LVGTV--------EKRGISGGQRKRVNVGLEMVME 671 (1118)
Q Consensus 610 f~a~lr~~~-~~~~~~~~~~v~~lL~~lgL~~~~dt---------~vg~~--------~~rgLSGGERQRVsIArALl~~ 671 (1118)
..+... ... ...++++++.+|+...... .+.+. .+..||||||||++||++|+.+
T Consensus 101 ---~~~ingk~~s----~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~ 173 (247)
T cd03275 101 ---SYRINGKVVS----LKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIH 173 (247)
T ss_pred ---EEEECCEEec----HHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHh
Confidence 011111 111 2346788888998532111 11111 1256999999999999999975
Q ss_pred ----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCc
Q 048718 672 ----PSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGG 731 (1118)
Q Consensus 672 ----P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG 731 (1118)
|+++||||||+|||+..+..+.+.|++++++|.++|++||+++ +.+.+|++++|.+.+
T Consensus 174 ~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~--~~~~~d~i~~~~~~~ 235 (247)
T cd03275 174 SYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEE--FFSKADALVGVYRDQ 235 (247)
T ss_pred ccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHH--HHhhCCeEEEEEecC
Confidence 8999999999999999999999999998877999999999954 458899999998765
No 392
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.84 E-value=1.4e-20 Score=219.07 Aligned_cols=206 Identities=21% Similarity=0.327 Sum_probs=159.1
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEE
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIG 590 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 590 (1118)
..|++++|++.-+.++..+++|+|++|..|+-+.|.||||+|||+|||+|+|+.+ ..+|.|.--.+.. -+.+-
T Consensus 432 n~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp--~~~G~l~k~~~~~-----~~~lf 504 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP--STGGKLTKPTDGG-----PKDLF 504 (659)
T ss_pred ceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc--cCCCeEEecccCC-----CCceE
Confidence 5699999999887545668899999999999999999999999999999999997 4688886533211 14589
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccC------ccCCCCCHHHHHHHHH
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGT------VEKRGISGGQRKRVNV 664 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~------~~~rgLSGGERQRVsI 664 (1118)
||||.|.+--. |.||.+.|+...-.+ ..+....+++.+.|+.++|.|...+.-|- +--..||+||+||++.
T Consensus 505 flPQrPYmt~G-TLRdQvIYP~~~~~~--~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ 581 (659)
T KOG0060|consen 505 FLPQRPYMTLG-TLRDQVIYPLKAEDM--DSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAF 581 (659)
T ss_pred EecCCCCcccc-chhheeeccCccccc--cccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHH
Confidence 99999987655 999999987432111 11112234567788888887765443221 1123599999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCc
Q 048718 665 GLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGG 731 (1118)
Q Consensus 665 ArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG 731 (1118)
||-+.++|++-||||.||++|......+.+.+|+ .|.|.|-|.|..+.. +.=|.++-|.-+|
T Consensus 582 ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkSL~--kfHd~~L~~~g~g 643 (659)
T KOG0060|consen 582 ARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRKSLW--KFHDYVLRMDGRG 643 (659)
T ss_pred HHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHHHHH--hhhhEEEEecCCC
Confidence 9999999999999999999999999999887765 499999999998754 5556666675434
No 393
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=4.2e-20 Score=207.53 Aligned_cols=192 Identities=27% Similarity=0.382 Sum_probs=149.9
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEE
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIG 590 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 590 (1118)
..+-+.||+|.|+ +.++++++++|-|.-...++|+||||.||||||++|.|.+. |..|+..-| .|-+||
T Consensus 585 PvLGlH~VtFgy~-gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~--P~~GE~RKn--------hrL~iG 653 (807)
T KOG0066|consen 585 PVLGLHDVTFGYP-GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD--PNDGELRKN--------HRLRIG 653 (807)
T ss_pred CeeecccccccCC-CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC--CCcchhhcc--------ceeeee
Confidence 4578899999997 45789999999999999999999999999999999999998 577765432 344689
Q ss_pred EEcCCCC--CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 048718 591 FVPQDDI--VHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEM 668 (1118)
Q Consensus 591 yV~Qd~~--l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArAL 668 (1118)
+.-|+.. |-..-|.-|.|.-.. +++..+ +...|..+||...++|. .+..|||||+-||++|.--
T Consensus 654 ~FdQh~~E~L~~Eetp~EyLqr~F------Nlpyq~----ARK~LG~fGL~sHAHTi----kikdLSGGQKaRValaeLa 719 (807)
T KOG0066|consen 654 WFDQHANEALNGEETPVEYLQRKF------NLPYQE----ARKQLGTFGLASHAHTI----KIKDLSGGQKARVALAELA 719 (807)
T ss_pred chhhhhHHhhccccCHHHHHHHhc------CCChHH----HHHHhhhhhhhhccceE----eeeecCCcchHHHHHHHHh
Confidence 9888643 333446666654322 233333 45678899998766663 3456999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCc
Q 048718 669 VMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGG 731 (1118)
Q Consensus 669 l~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG 731 (1118)
+..|+||||||||++||..+...+.++|++. .-.|||++||.... .+.-..++|+.+.|
T Consensus 720 l~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRLi-~eT~C~LwVvE~Q~ 778 (807)
T KOG0066|consen 720 LGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERLI-VETDCNLWVVENQG 778 (807)
T ss_pred cCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEeccccee-eecCceEEEEccCC
Confidence 9999999999999999999999999988775 34799999997753 34455677776654
No 394
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=4.8e-20 Score=212.38 Aligned_cols=204 Identities=22% Similarity=0.301 Sum_probs=140.8
Q ss_pred ceEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeE
Q 048718 510 TIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRII 589 (1118)
Q Consensus 510 ~~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~I 589 (1118)
..+|...++++.| +.+.+|.+-++++..|..++|+||||+|||||||+|+. |.|..... ..+.+.
T Consensus 78 ~~Di~~~~fdLa~--G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~--------~~v~~f~v---eqE~~g-- 142 (582)
T KOG0062|consen 78 SKDIHIDNFDLAY--GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN--------GQVSGFHV---EQEVRG-- 142 (582)
T ss_pred ccceeeeeeeeee--cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh--------cCcCccCc---hhheec--
Confidence 4568888899999 45789999999999999999999999999999999987 12211111 111221
Q ss_pred EEEcCC-CCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHH
Q 048718 590 GFVPQD-DIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHI-RDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 590 gyV~Qd-~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~-~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
-|++-. ..+...+++.+-|.--..+ .... ...+...++|.-||.+.. ....++ .||||-|-|+++|||
T Consensus 143 ~~t~~~~~~l~~D~~~~dfl~~e~~l--~~~~---~l~ei~~~~L~glGFt~emq~~pt~-----slSGGWrMrlaLARA 212 (582)
T KOG0062|consen 143 DDTEALQSVLESDTERLDFLAEEKEL--LAGL---TLEEIYDKILAGLGFTPEMQLQPTK-----SLSGGWRMRLALARA 212 (582)
T ss_pred cchHHHhhhhhccHHHHHHHHhhhhh--hccc---hHHHHHHHHHHhCCCCHHHHhcccc-----ccCcchhhHHHHHHH
Confidence 122211 1223333333333221111 0011 223344558888998754 344444 499999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 668 MVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 668 Ll~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
|..+|+||+|||||+.||..+..-+.+.|... +.|+|+|+||-.+ +-..+.+||-+.....=.|.|..++.
T Consensus 213 lf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHDr~F-Ln~V~tdIIH~~~~kL~~YkGN~~~F 283 (582)
T KOG0062|consen 213 LFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHDRNF-LNTVCTDIIHLENLKLDYYKGNYSQF 283 (582)
T ss_pred HhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEeccHHH-HHHHHHHHHHHhhhhhhhhcCcHHHH
Confidence 99999999999999999999988888877654 5899999999775 55677788877543223577776654
No 395
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.80 E-value=4.3e-19 Score=184.77 Aligned_cols=211 Identities=24% Similarity=0.345 Sum_probs=159.4
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEec-Ch-------
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVA-SI------- 582 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~-~~------- 582 (1118)
..|++.++.|+|+. ..+++-|+|+.++.|....++|.||||||||||+|+|..- ...|.|.++|++. ..
T Consensus 12 ~aievsgl~f~y~~-~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm--v~~~~v~VlgrsaFhDt~l~~Sg 88 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKV-SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM--VGGGVVQVLGRSAFHDTSLESSG 88 (291)
T ss_pred ceEEEeccEEeccc-CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc--ccCCeEEEcCcCccccccccccC
Confidence 45889999999974 3589999999999999999999999999999999999864 2359999999753 10
Q ss_pred ------hhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 048718 583 ------QSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISG 656 (1118)
Q Consensus 583 ------~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSG 656 (1118)
.++.+.+++.-+- -+...+++.+ +.|+..- ... ++-+++++.|.+.-.. +. +.+|-
T Consensus 89 dl~YLGgeW~~~~~~agev-plq~D~sae~-mifgV~g-----~dp----~Rre~LI~iLDIdl~W--Rm-----HkvSD 150 (291)
T KOG2355|consen 89 DLSYLGGEWSKTVGIAGEV-PLQGDISAEH-MIFGVGG-----DDP----ERREKLIDILDIDLRW--RM-----HKVSD 150 (291)
T ss_pred ceeEecccccccccccccc-cccccccHHH-HHhhccC-----CCh----hHhhhhhhheeccceE--EE-----eeccc
Confidence 1233334443322 2334566655 4454321 111 2456778877765322 11 23999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEE
Q 048718 657 GQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAKGGVIVY 735 (1118)
Q Consensus 657 GERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~ 735 (1118)
|||+||.|++.|++.-++|+|||-|-.||...+.++++.|++..+ +|.||+..||--+- +.....+++.|. +|+++.
T Consensus 151 GqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDG-Le~Wpthl~yi~-~Gkl~~ 228 (291)
T KOG2355|consen 151 GQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDG-LETWPTHLVYIK-SGKLVD 228 (291)
T ss_pred cchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccc-hhhcchhEEEec-CCeeee
Confidence 999999999999999999999999999999999999999999885 59999999998763 567777888886 478887
Q ss_pred ecChhhHHH
Q 048718 736 HGPVKKVEE 744 (1118)
Q Consensus 736 ~G~~~~l~~ 744 (1118)
.-+.+++.+
T Consensus 229 ~l~~~~i~e 237 (291)
T KOG2355|consen 229 NLKYQKIKE 237 (291)
T ss_pred ccccchhhh
Confidence 666666554
No 396
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=1.1e-18 Score=201.19 Aligned_cols=208 Identities=22% Similarity=0.309 Sum_probs=160.9
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEE
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIG 590 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 590 (1118)
..+++.+|+|.|..+.-+++.++++.++.-+..+++|+||+||||++|++.|... |.+|.+.+.+ |.+|+
T Consensus 361 p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~--------r~ri~ 430 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP--------RLRIK 430 (582)
T ss_pred CeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc--------cceec
Confidence 4689999999996433379999999999999999999999999999999999876 5788776654 56799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHI-RDSLVGTVEKRGISGGQRKRVNVGLEMV 669 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~-~dt~vg~~~~rgLSGGERQRVsIArALl 669 (1118)
|-.|...=+-.+.|-+- .+..+.+ .+.++++ +++-+..|||+.. ....+ .+||||||-||++|....
T Consensus 431 ~f~Qhhvd~l~~~v~~v-d~~~~~~--pG~~~ee----~r~hl~~~Gl~g~la~~si-----~~LSGGQKsrvafA~~~~ 498 (582)
T KOG0062|consen 431 YFAQHHVDFLDKNVNAV-DFMEKSF--PGKTEEE----IRRHLGSFGLSGELALQSI-----ASLSGGQKSRVAFAACTW 498 (582)
T ss_pred chhHhhhhHHHHHhHHH-HHHHHhC--CCCCHHH----HHHHHHhcCCCchhhhccc-----cccCCcchhHHHHHHHhc
Confidence 99998655545555443 3333333 2334433 5677899999743 33333 459999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHHH
Q 048718 670 MEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVEE 744 (1118)
Q Consensus 670 ~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~~ 744 (1118)
.+|.+|+|||||+.||..+-..+.++|+.. +-.||+||||.+. +-..|+.+++..+|...-..|...+-+.
T Consensus 499 ~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~f-i~~~c~E~Wvve~g~vt~ieg~~~~yKk 569 (582)
T KOG0062|consen 499 NNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEEF-ISSLCKELWVVEDGKVTPIEGGIDKYKK 569 (582)
T ss_pred CCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHHH-HhhcCceeEEEcCCcEEeeeccHHHHHH
Confidence 999999999999999999999999888765 3479999999875 5688999999987544445666644443
No 397
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.77 E-value=2.7e-18 Score=184.44 Aligned_cols=78 Identities=15% Similarity=0.268 Sum_probs=64.9
Q ss_pred CCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-C-CEEEEEEcCCcHHHHhccC--c
Q 048718 652 RGISGGQRKRVNVGLEM----VMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-G-VNICTVVHQPSYALFRMFD--D 723 (1118)
Q Consensus 652 rgLSGGERQRVsIArAL----l~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G-~TIIvvtHq~~~~i~~~~D--~ 723 (1118)
..||||||||+.++.+| +.+|+++++||||+|||+.++..+++.|++++++ | .++|++||++... .+.+| +
T Consensus 125 ~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~-~~~~~~~~ 203 (213)
T cd03277 125 HHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPG-LNYHEKMT 203 (213)
T ss_pred hhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccC-CcccCceE
Confidence 45999999999877554 5899999999999999999999999999998765 5 5799999997654 35665 6
Q ss_pred EEEEecC
Q 048718 724 LILLAKG 730 (1118)
Q Consensus 724 vivL~~G 730 (1118)
+++|.+|
T Consensus 204 v~~l~~g 210 (213)
T cd03277 204 VLCVYNG 210 (213)
T ss_pred EEEEecC
Confidence 7777654
No 398
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.77 E-value=4.6e-19 Score=201.59 Aligned_cols=168 Identities=28% Similarity=0.367 Sum_probs=125.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh----hhhc-------------C--eEEEEcCC--
Q 048718 537 LSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI----QSYK-------------R--IIGFVPQD-- 595 (1118)
Q Consensus 537 I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r-------------~--~IgyV~Qd-- 595 (1118)
.++|++++|+||||-||||-+|+|+|.+.| .=|+ +++.+ +. +.+| . ++..=+|-
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~P--NLG~--~~~pp-~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd 171 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKP--NLGR--YEDPP-SWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVD 171 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCcccc--CCCC--CCCCC-CHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHH
Confidence 369999999999999999999999999874 2221 11211 10 0111 0 12223332
Q ss_pred --CCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCC
Q 048718 596 --DIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPS 673 (1118)
Q Consensus 596 --~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~ 673 (1118)
|..+-. ||.|-|.-.- .+-..+++++.|+|.+..|+.+.+ |||||.|||+||.+++++++
T Consensus 172 ~iPk~~KG-~v~elLk~~d------------e~g~~devve~l~L~nvl~r~v~~-----LSGGELQr~aIaa~l~rdAD 233 (591)
T COG1245 172 LIPKVVKG-KVGELLKKVD------------ERGKFDEVVERLGLENVLDRDVSE-----LSGGELQRVAIAAALLRDAD 233 (591)
T ss_pred HHHHHhcc-hHHHHHHhhh------------hcCcHHHHHHHhcchhhhhhhhhh-----cCchHHHHHHHHHHHhccCC
Confidence 222222 6666554211 112478999999999999998876 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEe
Q 048718 674 LLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLA 728 (1118)
Q Consensus 674 lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~ 728 (1118)
++++|||||-||...+....+.+|++++.+++||++.||+.. +--+.|-+.++.
T Consensus 234 vY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLav-LD~lsD~vhI~Y 287 (591)
T COG1245 234 VYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAV-LDYLSDFVHILY 287 (591)
T ss_pred EEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHH-HHHhhheeEEEe
Confidence 999999999999999999999999999889999999999753 334556666664
No 399
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.77 E-value=2.1e-18 Score=183.04 Aligned_cols=147 Identities=18% Similarity=0.136 Sum_probs=106.8
Q ss_pred eeeeeEEEEeCC-eEEEEECCCCCcHHHHHHHHH--------cCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCC
Q 048718 529 LMRSVTGKLSPG-RVSAVMGPSGAGKTTFLSALK--------GRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVH 599 (1118)
Q Consensus 529 IL~nVSl~I~~G-Ei~aIlGpnGSGKSTLLkiLa--------Gl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~ 599 (1118)
-+-++|+++.+| ++++|.||||||||||||+|+ |..- |... ...++|..|....
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~v--p~~~--------------~~~~~~~~~~~~~- 78 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPI--PAAE--------------GSSLPVFENIFAD- 78 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCc--cccc--------------cccCcCccEEEEe-
Confidence 345789999999 489999999999999999998 3221 1100 0123333332111
Q ss_pred CCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 048718 600 GNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDE 679 (1118)
Q Consensus 600 ~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDE 679 (1118)
+++.+..+..++ .+|+||||++.|+++ +.+|+++++||
T Consensus 79 ------------------------------------lg~~~~l~~~~s-----~fs~g~~~~~~i~~~-~~~p~llllDE 116 (200)
T cd03280 79 ------------------------------------IGDEQSIEQSLS-----TFSSHMKNIARILQH-ADPDSLVLLDE 116 (200)
T ss_pred ------------------------------------cCchhhhhcCcc-----hHHHHHHHHHHHHHh-CCCCcEEEEcC
Confidence 111111222223 399999999999987 48999999999
Q ss_pred CCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEec
Q 048718 680 PTSGLDSSSSQLLLR-ALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHG 737 (1118)
Q Consensus 680 PTsGLD~~sa~~i~~-~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G 737 (1118)
||+|||+..+..+.. .++.+.+.|.++|++||+. .+.+++|++++|.+ |++++.+
T Consensus 117 p~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~-g~l~~~~ 172 (200)
T cd03280 117 LGSGTDPVEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVEN-ASMEFDP 172 (200)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEE-EEEEEec
Confidence 999999999999975 6777776789999999984 35689999999976 6887763
No 400
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.74 E-value=1.3e-17 Score=174.43 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEec
Q 048718 654 ISGGQRKRVNVGLEMV----MEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAK 729 (1118)
Q Consensus 654 LSGGERQRVsIArALl----~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~ 729 (1118)
||||||||++||++|+ .+|+++++||||++||+..+..+.+.|+++++.|.++|+++|+++. .+.+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~--~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEM--FENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHH--HhhCCeEEEEEE
Confidence 9999999999999996 6999999999999999999999999999988778999999999764 468999999976
Q ss_pred C
Q 048718 730 G 730 (1118)
Q Consensus 730 G 730 (1118)
.
T Consensus 173 ~ 173 (178)
T cd03239 173 V 173 (178)
T ss_pred e
Confidence 3
No 401
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.74 E-value=2.8e-18 Score=197.42 Aligned_cols=187 Identities=21% Similarity=0.377 Sum_probs=140.0
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEE
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIG 590 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 590 (1118)
.+|.++|+-+-.+. ...++..++|.|++|-.+.|+||||||||+|+|+|+|+.| . ++|.-..+ .+..+-
T Consensus 480 ~gI~lenIpvItP~-~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP--v------y~g~L~~P--~~~~mF 548 (728)
T KOG0064|consen 480 NGIILENIPVITPA-GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP--V------YNGLLSIP--RPNNIF 548 (728)
T ss_pred cceEEecCceeccC-cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCc--c------cCCeeecC--CCcceE
Confidence 35788888776653 4568899999999999999999999999999999999997 3 34432111 234599
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhc--cCCCCCHHHHHHHHHHHHHHcCCCccccccccCcc----CCCCCHHHHHHHHH
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCR--LSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVE----KRGISGGQRKRVNV 664 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr--~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~----~rgLSGGERQRVsI 664 (1118)
|+||.|.+- .-|.+|.+-|.-..- ..++..+. ....+|+.+.|+|...+-.|-+- ..-||||||||+++
T Consensus 549 YIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d~----dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~m 623 (728)
T KOG0064|consen 549 YIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTDQ----DLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGM 623 (728)
T ss_pred eccCCCccC-cCcccceeecCCcHHHHHhcCCCHH----HHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHH
Confidence 999999766 447777776642110 01223332 35667777777766555443221 22499999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHH
Q 048718 665 GLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYA 716 (1118)
Q Consensus 665 ArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~ 716 (1118)
||.+-++|+..+|||-||+..+.....+.++.+. .|.+.|-++|+|+.-
T Consensus 624 ARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrpslw 672 (728)
T KOG0064|consen 624 ARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPSLW 672 (728)
T ss_pred HHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCccHH
Confidence 9999999999999999999999888888876654 499999999999854
No 402
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.73 E-value=3.6e-18 Score=181.60 Aligned_cols=137 Identities=20% Similarity=0.173 Sum_probs=104.0
Q ss_pred ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHH
Q 048718 527 KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEE 606 (1118)
Q Consensus 527 k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~E 606 (1118)
+.|++|+++. .|++++|+||||||||||||+|+|... +...|.++.. -.+++|.+.+|+.+|+.|
T Consensus 14 ~~v~n~i~l~--~g~~~~ltGpNg~GKSTllr~i~~~~~-------l~~~G~~v~a------~~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 14 KRVANDIDME--KKNGILITGSNMSGKSTFLRTIGVNVI-------LAQAGAPVCA------SSFELPPVKIFTSIRVSD 78 (199)
T ss_pred CeecceEEEc--CCcEEEEECCCCCChHHHHHHHHHHHH-------HHHcCCEEec------CccCcccceEEEeccchh
Confidence 4688888776 579999999999999999999998652 1123433321 136778888899999999
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048718 607 NLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDS 686 (1118)
Q Consensus 607 nL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~ 686 (1118)
|+.++... ...+. .++.++++.+++ .+|+++++||||+|||+
T Consensus 79 ~l~~~~s~------~~~e~-~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~ 120 (199)
T cd03283 79 DLRDGISY------FYAEL-RRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNS 120 (199)
T ss_pred ccccccCh------HHHHH-HHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCH
Confidence 99876421 12222 456777776652 69999999999999999
Q ss_pred HHHHHHHH-HHHHHHHCCCEEEEEEcCCcHH
Q 048718 687 SSSQLLLR-ALRREALEGVNICTVVHQPSYA 716 (1118)
Q Consensus 687 ~sa~~i~~-~Lr~la~~G~TIIvvtHq~~~~ 716 (1118)
..+..+.. .++.+.+.|.++|++||+++..
T Consensus 121 ~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~ 151 (199)
T cd03283 121 RERQAASAAVLKFLKNKNTIGIISTHDLELA 151 (199)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCcHHHH
Confidence 99987764 6787777799999999998753
No 403
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.73 E-value=1.7e-17 Score=186.87 Aligned_cols=180 Identities=28% Similarity=0.431 Sum_probs=136.4
Q ss_pred ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC------CCceeEEEECCEecChhhhcCeEEEEcCCC-CCC
Q 048718 527 KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPG------CIMSGTILVNGKVASIQSYKRIIGFVPQDD-IVH 599 (1118)
Q Consensus 527 k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~------~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~-~l~ 599 (1118)
..+|+|+|++|+||++++|+|+|||||||||++|+|.... .|++|.|.+--.. ..+.+|-.. .-|
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt--------~~a~iPge~Ep~f 467 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT--------VSALIPGEYEPEF 467 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc--------hhhccCccccccc
Confidence 5699999999999999999999999999999999998542 2567777653211 224455432 123
Q ss_pred CCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCcc--ccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 048718 600 GNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHI--RDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLIL 677 (1118)
Q Consensus 600 ~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~--~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlL 677 (1118)
..-|+.|.+.- ...+. ....++|++.||.+- ..... +.||-|||.|+.||.++..+|.+++.
T Consensus 468 ~~~tilehl~s-----~tGD~------~~AveILnraGlsDAvlyRr~f-----~ELStGQKeR~KLAkllaerpn~~~i 531 (593)
T COG2401 468 GEVTILEHLRS-----KTGDL------NAAVEILNRAGLSDAVLYRRKF-----SELSTGQKERAKLAKLLAERPNVLLI 531 (593)
T ss_pred CchhHHHHHhh-----ccCch------hHHHHHHHhhccchhhhhhccH-----hhcCcchHHHHHHHHHHhcCCCcEEh
Confidence 34566666531 11111 125678999999753 23333 35999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhc-cCcEEEEecCc
Q 048718 678 DEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRM-FDDLILLAKGG 731 (1118)
Q Consensus 678 DEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~-~D~vivL~~GG 731 (1118)
||--+.||+.++..+.+-|.+++++ |.|++++||+++. +-.+ =|.++.+.-|+
T Consensus 532 DEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv-~~AL~PD~li~vgYg~ 586 (593)
T COG2401 532 DEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV-GNALRPDTLILVGYGK 586 (593)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHH-HhccCCceeEEeeccc
Confidence 9999999999999999999999965 9999999999875 3344 57787776654
No 404
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.73 E-value=1.5e-16 Score=191.40 Aligned_cols=129 Identities=33% Similarity=0.486 Sum_probs=104.2
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCC---CEEEE
Q 048718 601 NLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEP---SLLIL 677 (1118)
Q Consensus 601 ~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P---~lLlL 677 (1118)
.|||.|-..|.... +. ..+.-+.|..+||.-.. .|+ ..-.|||||.|||-+|.+|.... .+++|
T Consensus 783 ~MTveEA~~FF~~~------p~---I~rkLqtL~dVGLgYi~---LGQ-patTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI------PK---IARKLQTLVDVGLGYIK---LGQ-PATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc------hH---HHHHHHHHHHcCcceEe---cCC-ccccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 47888888887532 21 22344566778886432 222 12349999999999999999888 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEe-----cCcEEEEecChhhHHH
Q 048718 678 DEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLA-----KGGVIVYHGPVKKVEE 744 (1118)
Q Consensus 678 DEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~-----~GG~iv~~G~~~~l~~ 744 (1118)
||||+||-......+++.|.+|...|.|||+|.|+++ +.+.+|.|+=|. +||+||..|+|+++.+
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLd--VIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccc--eEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 9999999999999999999999999999999999987 458999998884 6789999999999863
No 405
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.72 E-value=6.5e-17 Score=211.89 Aligned_cols=127 Identities=24% Similarity=0.359 Sum_probs=104.2
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhhC---CCEEE
Q 048718 601 NLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHI-RDSLVGTVEKRGISGGQRKRVNVGLEMVME---PSLLI 676 (1118)
Q Consensus 601 ~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~-~dt~vg~~~~rgLSGGERQRVsIArALl~~---P~lLl 676 (1118)
.|||.|.+.|... .+ +..+.-+.|..+||... ..+... .|||||.||+-||..|..+ +.+++
T Consensus 1660 ~mtv~ea~~~F~~------~~---~i~~~L~~L~~vGLgYl~LGq~~~-----tLSGGE~qRikLa~~l~~~~~~~~lyi 1725 (1809)
T PRK00635 1660 QTPIEEVAETFPF------LK---KIQKPLQALIDNGLGYLPLGQNLS-----SLSLSEKIAIKIAKFLYLPPKHPTLFL 1725 (1809)
T ss_pred cCCHHHHHHHhhc------cH---HHHHHHHHHHHcCCCeeeCCCcCC-----ccCchHHHHHHHHHHHhcCCCCCcEEE
Confidence 4788888777632 11 22345677888999764 233333 4999999999999999875 78999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEe-----cCcEEEEecChhhHH
Q 048718 677 LDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLA-----KGGVIVYHGPVKKVE 743 (1118)
Q Consensus 677 LDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~-----~GG~iv~~G~~~~l~ 743 (1118)
|||||.||++.....+++.|++|...|.|||+|.|+++ +.+.+|.++-|. +||+||+.|+++++.
T Consensus 1726 lDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~--~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~ 1795 (1809)
T PRK00635 1726 LDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPA--LLKQADYLIEMGPGSGKTGGKILFSGPPKDIS 1795 (1809)
T ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH--HHHhCCEEEEcCCCcccCCCEEEEEeCHHHHh
Confidence 99999999999999999999999999999999999976 447799999885 578999999999985
No 406
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=3.4e-17 Score=182.28 Aligned_cols=76 Identities=24% Similarity=0.368 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEe
Q 048718 653 GISGGQRKRVNVGLEMVM----EPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLA 728 (1118)
Q Consensus 653 gLSGGERQRVsIArALl~----~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~ 728 (1118)
.|||||+||++||++++. +|+++++||||++||+.....+.+.|+++.. +.|+|+++|++. +...+|++++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 399999999999997654 9999999999999999999999999998864 789999999986 347999999998
Q ss_pred cCc
Q 048718 729 KGG 731 (1118)
Q Consensus 729 ~GG 731 (1118)
+++
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 753
No 407
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.69 E-value=9.2e-17 Score=165.12 Aligned_cols=74 Identities=30% Similarity=0.510 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEec
Q 048718 654 ISGGQRKRVNVGLEMVM----EPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAK 729 (1118)
Q Consensus 654 LSGGERQRVsIArALl~----~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~ 729 (1118)
||+||+||++||++|+. +|+++|+|||++|||+.....+.+.|.++..+|.++|++||+++. .+.+|+++.|..
T Consensus 78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~--~~~~d~~~~l~~ 155 (162)
T cd03227 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPEL--AELADKLIHIKK 155 (162)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH--HHhhhhEEEEEE
Confidence 99999999999999997 789999999999999999999999998887568899999999874 467899999864
No 408
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.68 E-value=6.5e-17 Score=174.83 Aligned_cols=153 Identities=20% Similarity=0.198 Sum_probs=113.5
Q ss_pred cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEE-EEcCCCCCCCCCCH
Q 048718 526 NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIG-FVPQDDIVHGNLTV 604 (1118)
Q Consensus 526 ~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig-yV~Qd~~l~~~LTV 604 (1118)
.+.+.+|+++++.+|++++|.||||+||||||++|+-. .+..++| |||.+...++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~--------------------~~la~~g~~vpa~~~~~~---- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI--------------------VLMAQIGCFVPCDSADIP---- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH--------------------HHHHHhCCCcCcccEEEe----
Confidence 35689999999999999999999999999999999821 1122233 5555432221
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC--
Q 048718 605 EENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEM--VMEPSLLILDEP-- 680 (1118)
Q Consensus 605 ~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArAL--l~~P~lLlLDEP-- 680 (1118)
.+++++..+|+.+.. . +++|.|+++++.+++++ +.+|+++|||||
T Consensus 72 -----------------------~~~~il~~~~l~d~~---~-----~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~ 120 (222)
T cd03285 72 -----------------------IVDCILARVGASDSQ---L-----KGVSTFMAEMLETAAILKSATENSLIIIDELGR 120 (222)
T ss_pred -----------------------ccceeEeeeccccch---h-----cCcChHHHHHHHHHHHHHhCCCCeEEEEecCcC
Confidence 123445556665332 2 35999999999999999 899999999999
Q ss_pred -CCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecC
Q 048718 681 -TSGLDSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGP 738 (1118)
Q Consensus 681 -TsGLD~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~ 738 (1118)
|++||+...... .++.+.+ .|.++|++||+ .++.+++|++..+.+ |++...+.
T Consensus 121 gT~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~-g~~~~~~~ 175 (222)
T cd03285 121 GTSTYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPNVKN-LHVTALTD 175 (222)
T ss_pred CCChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEE-EEEEEEEe
Confidence 999999887543 3344443 48899999997 346689999988876 68776653
No 409
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.65 E-value=5.4e-16 Score=195.90 Aligned_cols=136 Identities=24% Similarity=0.396 Sum_probs=109.4
Q ss_pred CCCCHHHHHHHHHhhccCCC---CC---HHHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhhCC
Q 048718 600 GNLTVEENLWFSARCRLSAD---LP---KAEKVLVVERVIESLGLQHI-RDSLVGTVEKRGISGGQRKRVNVGLEMVMEP 672 (1118)
Q Consensus 600 ~~LTV~EnL~f~a~lr~~~~---~~---~~~~~~~v~~lL~~lgL~~~-~dt~vg~~~~rgLSGGERQRVsIArALl~~P 672 (1118)
..|||.|.+.|.-.+..+.. .. -.+...+++ .|+.+||.+. .|+.+.+ |||||+|||.||++|+.+|
T Consensus 435 ~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~-----LSgGE~QRv~LA~aL~~~~ 508 (943)
T PRK00349 435 SELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGT-----LSGGEAQRIRLATQIGSGL 508 (943)
T ss_pred hcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhh-----CCHHHHHHHHHHHHHhhCC
Confidence 36899999998544322110 00 012334454 6888999876 7888876 9999999999999999997
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEe-----cCcEEEEecChhhHH
Q 048718 673 --SLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLA-----KGGVIVYHGPVKKVE 743 (1118)
Q Consensus 673 --~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~-----~GG~iv~~G~~~~l~ 743 (1118)
+||||||||+|||+..+..++++|+++++.|.|||+|+|+++. + ..+|++++|. +||++++.|+++++.
T Consensus 509 ~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~-i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 509 TGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDT-I-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred CCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 9999999999999999999999999998889999999999875 3 4699999992 357999999998863
No 410
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.65 E-value=9.3e-16 Score=193.46 Aligned_cols=135 Identities=25% Similarity=0.386 Sum_probs=106.5
Q ss_pred CCCHHHHHHHHHhhccCCCCCH------HHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhhCC-
Q 048718 601 NLTVEENLWFSARCRLSADLPK------AEKVLVVERVIESLGLQHI-RDSLVGTVEKRGISGGQRKRVNVGLEMVMEP- 672 (1118)
Q Consensus 601 ~LTV~EnL~f~a~lr~~~~~~~------~~~~~~v~~lL~~lgL~~~-~dt~vg~~~~rgLSGGERQRVsIArALl~~P- 672 (1118)
.|||.|.+.|...+........ .+...++ +.|..+||.+. .++.+.+ |||||+|||.||++|+.+|
T Consensus 434 ~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~~t-----LSGGE~QRv~LA~aL~~~~~ 507 (924)
T TIGR00630 434 ELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAAGT-----LSGGEAQRIRLATQIGSGLT 507 (924)
T ss_pred cCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCcCc-----CCHHHHHHHHHHHHHhhCCC
Confidence 6899999988765432210000 1112222 23677888765 5777765 9999999999999999986
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEe-----cCcEEEEecChhhHH
Q 048718 673 -SLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLA-----KGGVIVYHGPVKKVE 743 (1118)
Q Consensus 673 -~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~-----~GG~iv~~G~~~~l~ 743 (1118)
.+|||||||+|||+.....+++.|+++.++|.|||+|+|+++. + ..+|++++|. +||++++.|+++++.
T Consensus 508 ~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~-i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 508 GVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEET-I-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHH-H-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 8999999999999999999999999998889999999999874 3 5899999993 468999999998763
No 411
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.3e-16 Score=179.78 Aligned_cols=221 Identities=24% Similarity=0.345 Sum_probs=152.3
Q ss_pred ceEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEec--------C
Q 048718 510 TIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVA--------S 581 (1118)
Q Consensus 510 ~~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~--------~ 581 (1118)
.+.|.++|.+.+- .++.++.|-|+.|-.|..++++||||-||||||+-|+.+.-..|..=.|++-.+.+ +
T Consensus 262 a~DIKiEnF~ISA--~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~ 339 (807)
T KOG0066|consen 262 AMDIKIENFDISA--QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAID 339 (807)
T ss_pred cccceeeeeeeec--ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHH
Confidence 4578888888776 34678999999999999999999999999999999998742222222333333211 0
Q ss_pred h--hhhcCeEEEEcCCCC-----CCCCCCHHHHHHHHH-hhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCC
Q 048718 582 I--QSYKRIIGFVPQDDI-----VHGNLTVEENLWFSA-RCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRG 653 (1118)
Q Consensus 582 ~--~~~r~~IgyV~Qd~~-----l~~~LTV~EnL~f~a-~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rg 653 (1118)
. +.-.++..++..... .-...|+.|-|.-.+ .++.- .....+.++.++|.-||.+.-...++.+ .
T Consensus 340 tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELrai---GA~sAEarARRILAGLGFskEMQ~rPt~----k 412 (807)
T KOG0066|consen 340 TVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAI---GADSAEARARRILAGLGFSKEMQERPTT----K 412 (807)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHh---ccccchhHHHHHHhhcCCChhHhcCCcc----c
Confidence 0 000111222222111 123457777664322 22211 1122345678899999987654444433 4
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEE
Q 048718 654 ISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVI 733 (1118)
Q Consensus 654 LSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~i 733 (1118)
+|||-|-||++||||..+|.+|.|||||+.||.....-+-+.|..+. +|.++++||-.+ +-..|.+||.|+....-
T Consensus 413 FSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQgF-LD~VCtdIIHLD~qkLh 488 (807)
T KOG0066|consen 413 FSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQGF-LDSVCTDIIHLDNQKLH 488 (807)
T ss_pred cCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccch-HHHHHHHHhhhhhhhhh
Confidence 99999999999999999999999999999999988777777776653 699999999886 56789999999876545
Q ss_pred EEecChhhHH
Q 048718 734 VYHGPVKKVE 743 (1118)
Q Consensus 734 v~~G~~~~l~ 743 (1118)
.|.|...-.+
T Consensus 489 yYrGNY~~FK 498 (807)
T KOG0066|consen 489 YYRGNYTLFK 498 (807)
T ss_pred hhcchHHHHH
Confidence 6777765443
No 412
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.62 E-value=3.6e-16 Score=166.12 Aligned_cols=156 Identities=15% Similarity=0.146 Sum_probs=101.2
Q ss_pred eeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHHH
Q 048718 528 HLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEEN 607 (1118)
Q Consensus 528 ~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~En 607 (1118)
.+..|+ ++.+|++++|+|||||||||||++|++..-. ...|... ...+..++|..|. +..+...++
T Consensus 19 ~~~~~~--~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~-~~~g~~~--------~~~~~~i~~~dqi---~~~~~~~d~ 84 (202)
T cd03243 19 FVPNDI--NLGSGRLLLITGPNMGGKSTYLRSIGLAVLL-AQIGCFV--------PAESASIPLVDRI---FTRIGAEDS 84 (202)
T ss_pred eEeeeE--EEcCCeEEEEECCCCCccHHHHHHHHHHHHH-HHcCCCc--------cccccccCCcCEE---EEEecCccc
Confidence 344444 4558999999999999999999999954310 0122110 0112234443322 111111111
Q ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048718 608 LWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSS 687 (1118)
Q Consensus 608 L~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~ 687 (1118)
....++ .++++++ |++.+.+++.+|+++|+||||+|||+.
T Consensus 85 ----------------------------------i~~~~s-----~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~ 124 (202)
T cd03243 85 ----------------------------------ISDGRS-----TFMAELL-ELKEILSLATPRSLVLIDELGRGTSTA 124 (202)
T ss_pred ----------------------------------ccCCce-----eHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHH
Confidence 111112 2565555 577777889999999999999999999
Q ss_pred HHHHHHH-HHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 688 SSQLLLR-ALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 688 sa~~i~~-~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
....+.. .++.+.+.+.++|++||+.+ +.+.++++..+.. +++...+...
T Consensus 125 ~~~~l~~~ll~~l~~~~~~vi~~tH~~~--~~~~~~~~~~l~~-~~~~~~~~~~ 175 (202)
T cd03243 125 EGLAIAYAVLEHLLEKGCRTLFATHFHE--LADLPEQVPGVKN-LHMEELITTG 175 (202)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEECChHH--HHHHhhcCCCeEE-EEEEEEecCC
Confidence 8888765 46666666899999999965 4568888888876 5777776543
No 413
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.60 E-value=1.2e-15 Score=162.93 Aligned_cols=137 Identities=16% Similarity=0.163 Sum_probs=100.3
Q ss_pred cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEE-EEcCCCCCCCCCCH
Q 048718 526 NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIG-FVPQDDIVHGNLTV 604 (1118)
Q Consensus 526 ~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig-yV~Qd~~l~~~LTV 604 (1118)
++.+.+|+++.+++|++++|+||||+||||||++|+++.- ..++| || +..++.+++
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~--------------------la~~G~~v---pa~~~~l~~ 71 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI--------------------MAQIGCFV---PAEYATLPI 71 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH--------------------HHHcCCCc---chhhcCccC
Confidence 4579999999999999999999999999999999998641 11122 23 334455667
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 048718 605 EENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGL 684 (1118)
Q Consensus 605 ~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGL 684 (1118)
.|+|.... +..+..++..+ .+|+|++|+ ..+.+++.+|++++||||++|+
T Consensus 72 ~d~I~~~~------------------------~~~d~~~~~~S-----~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt 121 (204)
T cd03282 72 FNRLLSRL------------------------SNDDSMERNLS-----TFASEMSET-AYILDYADGDSLVLIDELGRGT 121 (204)
T ss_pred hhheeEec------------------------CCccccchhhh-----HHHHHHHHH-HHHHHhcCCCcEEEeccccCCC
Confidence 77664321 22221222222 389999965 5566789999999999999999
Q ss_pred CHHHHHHHH-HHHHHHHHCCCEEEEEEcCCcH
Q 048718 685 DSSSSQLLL-RALRREALEGVNICTVVHQPSY 715 (1118)
Q Consensus 685 D~~sa~~i~-~~Lr~la~~G~TIIvvtHq~~~ 715 (1118)
|+.....+. ..++.+.+.|.++|++||+.+.
T Consensus 122 ~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l 153 (204)
T cd03282 122 SSADGFAISLAILECLIKKESTVFFATHFRDI 153 (204)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEECChHHH
Confidence 998766654 4567777779999999999764
No 414
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=2.7e-14 Score=158.56 Aligned_cols=75 Identities=19% Similarity=0.260 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhcc--
Q 048718 653 GISGGQRKRVNVGLEMV---------MEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMF-- 721 (1118)
Q Consensus 653 gLSGGERQRVsIArALl---------~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~-- 721 (1118)
-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.|+++ + .+++++|+... +.+.+
T Consensus 183 ~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~---~-q~ii~~~~~~~-~~~~~~~ 257 (270)
T cd03242 183 FGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR---V-QTFVTTTDLAD-FDALWLR 257 (270)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC---C-CEEEEeCCchh-ccchhcc
Confidence 48999999999999985 799999999999999999999999988764 2 35556655443 33455
Q ss_pred -CcEEEEecCcEE
Q 048718 722 -DDLILLAKGGVI 733 (1118)
Q Consensus 722 -D~vivL~~GG~i 733 (1118)
++++.+.+ |++
T Consensus 258 ~~~i~~l~~-g~i 269 (270)
T cd03242 258 RAQIFRVDA-GTL 269 (270)
T ss_pred CccEEEEeC-cEE
Confidence 56777765 554
No 415
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.54 E-value=3.2e-14 Score=161.29 Aligned_cols=176 Identities=26% Similarity=0.345 Sum_probs=135.5
Q ss_pred ceeeeeeEEEEeCC-----eEEEEECCCCCcHHHHHHHHHcCCCCCCce-eEEEECCEecChhhhcCeEEEEcCCCCCCC
Q 048718 527 KHLMRSVTGKLSPG-----RVSAVMGPSGAGKTTFLSALKGRVPGCIMS-GTILVNGKVASIQSYKRIIGFVPQDDIVHG 600 (1118)
Q Consensus 527 k~IL~nVSl~I~~G-----Ei~aIlGpnGSGKSTLLkiLaGl~~~~~~s-G~I~inG~~~~~~~~r~~IgyV~Qd~~l~~ 600 (1118)
+.-+.++.+.|+.| |++..+|.||-|||||+++|+|.++ |++ |+|-. -.|+|=||...--.
T Consensus 349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~--pd~~~e~p~-----------lnVSykpqkispK~ 415 (592)
T KOG0063|consen 349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK--PDEGGEIPV-----------LNVSYKPQKISPKR 415 (592)
T ss_pred eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCC--CCccCcccc-----------cceeccccccCccc
Confidence 45677788888777 5789999999999999999999987 343 33321 23677777644334
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 048718 601 NLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEP 680 (1118)
Q Consensus 601 ~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEP 680 (1118)
.-||++.+.--.+- .-.....+.++++-|.+++..|.-|.+ |||||.|||+||..|-..+++++.|||
T Consensus 416 ~~tvR~ll~~kIr~-------ay~~pqF~~dvmkpL~ie~i~dqevq~-----lSggelQRval~KOGGKpAdvYliDEp 483 (592)
T KOG0063|consen 416 EGTVRQLLHTKIRD-------AYMHPQFVNDVMKPLQIENIIDQEVQG-----LSGGELQRVALALCLGKPADVYLIDEP 483 (592)
T ss_pred cchHHHHHHHHhHh-------hhcCHHHHHhhhhhhhHHHHHhHHhhc-----CCchhhHHHHHHHhcCCCCceEEecCc
Confidence 56888876532211 111224578889989888888887765 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH-HCCCEEEEEEcCCcHHHHhccCcEEEEe
Q 048718 681 TSGLDSSSSQLLLRALRREA-LEGVNICTVVHQPSYALFRMFDDLILLA 728 (1118)
Q Consensus 681 TsGLD~~sa~~i~~~Lr~la-~~G~TIIvvtHq~~~~i~~~~D~vivL~ 728 (1118)
.+-||+..+..--+.+++.. ..++|-.++.||.-.+.| ++|++++..
T Consensus 484 sAylDSeQRi~AskvikRfilhakktafvVEhdfImaTY-ladrvivf~ 531 (592)
T KOG0063|consen 484 SAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATY-LADRVIVFE 531 (592)
T ss_pred hhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHh-hcceeEEEe
Confidence 99999999999888888876 558999999999655543 678777763
No 416
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.49 E-value=8.6e-14 Score=150.05 Aligned_cols=159 Identities=18% Similarity=0.125 Sum_probs=105.2
Q ss_pred cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHH
Q 048718 526 NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVE 605 (1118)
Q Consensus 526 ~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~ 605 (1118)
++.+.+|+++..++ ++++|+||||+|||||||+|++..- -|+ .|..+. ..+..++|+.| +++.+++.
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~----l~~---~g~~vp--~~~~~i~~~~~---i~~~~~~~ 83 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIAL----LAQ---IGSFVP--ASKAEIGVVDR---IFTRIGAS 83 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHH----Hhc---cCCeec--cccceecceee---EeccCCch
Confidence 34688999999877 9999999999999999999987542 111 121111 12356788765 56778888
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC---CC
Q 048718 606 ENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEP---TS 682 (1118)
Q Consensus 606 EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEP---Ts 682 (1118)
|++..+... . ..|+++++.+...+.+|++++|||| |+
T Consensus 84 ~~ls~g~s~---------------------------------------f-~~e~~~l~~~l~~~~~~~llllDEp~~gt~ 123 (216)
T cd03284 84 DDLAGGRST---------------------------------------F-MVEMVETANILNNATERSLVLLDEIGRGTS 123 (216)
T ss_pred hhhccCcch---------------------------------------H-HHHHHHHHHHHHhCCCCeEEEEecCCCCCC
Confidence 877543100 0 1223344444444679999999999 88
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 683 GLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 683 GLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
+||.... ....++.+.+. +.++|++||+.+ +.++.|++..+.+ +++...+..+++
T Consensus 124 ~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~~--l~~l~~~~~~v~~-~~~~~~~~~~~l 179 (216)
T cd03284 124 TYDGLSI--AWAIVEYLHEKIGAKTLFATHYHE--LTELEGKLPRVKN-FHVAVKEKGGGV 179 (216)
T ss_pred hHHHHHH--HHHHHHHHHhccCCcEEEEeCcHH--HHHHhhcCCCeEE-EEEEEEeeCCeE
Confidence 8887652 23344455555 889999999964 4577887766655 566665554443
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.48 E-value=1.4e-13 Score=153.07 Aligned_cols=139 Identities=23% Similarity=0.258 Sum_probs=96.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC----hhhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhcc
Q 048718 541 RVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS----IQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRL 616 (1118)
Q Consensus 541 Ei~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~----~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~ 616 (1118)
.-++|+||||||||||+++|+|++. +.+|+|.++|+++. ..++.+.++++||++ +...++|.||..-
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~--~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~k------ 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS--TGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCPK------ 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC--CCCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccchH------
Confidence 5789999999999999999999998 68999999998863 234455678888875 3445666554211
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 048718 617 SADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRAL 696 (1118)
Q Consensus 617 ~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~L 696 (1118)
.+ | ..+..+.++|+++++|||++ ...+..++
T Consensus 183 ------~~--------------------------------~-----~~~~i~~~~P~villDE~~~------~e~~~~l~ 213 (270)
T TIGR02858 183 ------AE--------------------------------G-----MMMLIRSMSPDVIVVDEIGR------EEDVEALL 213 (270)
T ss_pred ------HH--------------------------------H-----HHHHHHhCCCCEEEEeCCCc------HHHHHHHH
Confidence 00 1 12222336999999999974 23344444
Q ss_pred HHHHHCCCEEEEEEcCCcHHHH------------hccCcEEEEecCcEEEEecChhh
Q 048718 697 RREALEGVNICTVVHQPSYALF------------RMFDDLILLAKGGVIVYHGPVKK 741 (1118)
Q Consensus 697 r~la~~G~TIIvvtHq~~~~i~------------~~~D~vivL~~GG~iv~~G~~~~ 741 (1118)
+.+ ..|.++|+++|+.+..-. ..||++++|+++ + ..|.+++
T Consensus 214 ~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~-~--~~g~~~~ 266 (270)
T TIGR02858 214 EAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRR-K--GPGTVEA 266 (270)
T ss_pred HHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecC-C--CCCceee
Confidence 444 469999999998665222 668999999764 3 4455543
No 418
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.37 E-value=1.2e-13 Score=143.90 Aligned_cols=197 Identities=21% Similarity=0.225 Sum_probs=140.9
Q ss_pred HHHHHHHHHHhhhhhhhhHHH-HHHHHHHHHHHHHHHhhccc-C--ccccchhhHHHHHHHHHH-HHhhhhHHHHHHhhh
Q 048718 868 VQYRYFLGRVGKQRLREAKIQ-VVDYLILLLAGICIGTLAKV-S--DENFGATGYTHTVIAVSL-LCKIAALRSFSLDKL 942 (1118)
Q Consensus 868 ~Q~~~L~~R~~~q~~Rd~~~~-~~~~~~~ll~GlilG~l~~~-~--~~~~g~~g~~~~vi~~~~-~~~i~al~~F~~Er~ 942 (1118)
||++.+++|.+++.+||+... ...++..++.++++|.++.. . ++.+...+.++..+.... .........+..|+.
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGFNRPGLIFGSIIFSFFSSISGSSISFERERG 80 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhcccccccccccceeeehhhHHhhhhhcccchhhhhhhcc
Confidence 699999999999999999888 78888888888888888742 2 222222333332222222 233444478899999
Q ss_pred HHHhhcCCCCC-HHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCcch-hHHHHHHHHHHHHHHHHHHHHHHHhcC-chh
Q 048718 943 HYWRESASGMS-SLAFFLSKDTVDHFNTLIKPLVYLSMFYFFNNPRSS-VTDNYLVLACLVYCVTGIAYIMAICFE-PGP 1019 (1118)
Q Consensus 943 vf~RE~~sG~y-~~aYflAk~l~dlp~~lv~piif~si~Y~m~g~~~~-~~~~~~v~l~l~~~~~~lg~~lsi~~~-~~~ 1019 (1118)
.+.||+.++.| ..+|+++|.+.+++..++..++++.+.|++.|.+.. +...++.+++...+..++|..++.... ...
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~ 160 (210)
T PF01061_consen 81 TLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFESFFLFLLILLLSILCSSGLGLLLAALFPSFRD 160 (210)
T ss_pred ccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccccchheecccccccccccccccccccchhhhhh
Confidence 99999999996 579999999999999999999999999999887664 322333444455556677777765443 333
Q ss_pred HHHHHHHHHHHHh----hhcCCCcchhhhhccccccHHHHHHHHHHHhc
Q 048718 1020 AQLWSVLLPVVLT----LIATNNDNNRFVERISDLSYTKWALEAFVVSN 1064 (1118)
Q Consensus 1020 a~l~s~l~p~v~~----l~~~~~~iP~~~~Wl~yiS~~rYa~Eal~ine 1064 (1118)
++....++..++. .+.+.+.+|++++|+.|++|++|++|++..++
T Consensus 161 ~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~ 209 (210)
T PF01061_consen 161 ASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAAL 209 (210)
T ss_pred hhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333222222 33456788999999999999999999988764
No 419
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.36 E-value=2.9e-13 Score=142.33 Aligned_cols=67 Identities=19% Similarity=0.177 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHC-CCEEEEEEcCCcHHHHhccCc
Q 048718 654 ISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLL-RALRREALE-GVNICTVVHQPSYALFRMFDD 723 (1118)
Q Consensus 654 LSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~-~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~ 723 (1118)
+|+|++|...+.. .+.+|+++++|||++|+|+.....+. ..++.+.++ +.++|++||+++ +.+++|+
T Consensus 62 fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~--l~~~~~~ 130 (185)
T smart00534 62 FMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE--LTKLADE 130 (185)
T ss_pred HHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH--HHHHhhc
Confidence 8888776433333 34599999999999999999888775 456666664 889999999974 4566664
No 420
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.36 E-value=1.2e-12 Score=163.83 Aligned_cols=135 Identities=21% Similarity=0.243 Sum_probs=92.5
Q ss_pred eEEEEeCC-eEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHHHHHHH
Q 048718 533 VTGKLSPG-RVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFS 611 (1118)
Q Consensus 533 VSl~I~~G-Ei~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~ 611 (1118)
+|+.+.+| ++++|.||||+|||||||+|+|..-. +..| .+||..... .+.+.+.+..
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~-aq~G------------------~~Vpa~~~~--~~~~~d~i~~- 371 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALM-FQSG------------------IPIPANEHS--EIPYFEEIFA- 371 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHH-HHhC------------------CCccCCccc--cccchhheee-
Confidence 78888877 99999999999999999999987210 1122 133433210 0111111110
Q ss_pred HhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 048718 612 ARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQL 691 (1118)
Q Consensus 612 a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~ 691 (1118)
.+... +.+. ..+ ..+|+|+++++.|++.+ .+|+++|+|||++|+|+.....
T Consensus 372 -------~i~~~------~si~----------~~L-----StfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~a 422 (771)
T TIGR01069 372 -------DIGDE------QSIE----------QNL-----STFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSA 422 (771)
T ss_pred -------ecChH------hHHh----------hhh-----hHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHH
Confidence 00000 0111 111 23999999999999877 8999999999999999999999
Q ss_pred HH-HHHHHHHHCCCEEEEEEcCCcHHHH
Q 048718 692 LL-RALRREALEGVNICTVVHQPSYALF 718 (1118)
Q Consensus 692 i~-~~Lr~la~~G~TIIvvtHq~~~~i~ 718 (1118)
+. .+|+.+...|.++|++||+.+...+
T Consensus 423 la~aiLe~l~~~g~~viitTH~~eL~~~ 450 (771)
T TIGR01069 423 LAISILEYLLKQNAQVLITTHYKELKAL 450 (771)
T ss_pred HHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 84 6777777779999999999875443
No 421
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.32 E-value=9e-12 Score=134.16 Aligned_cols=133 Identities=15% Similarity=0.164 Sum_probs=87.8
Q ss_pred eeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcC--CCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCC-CCCHH
Q 048718 529 LMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGR--VPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHG-NLTVE 605 (1118)
Q Consensus 529 IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl--~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~-~LTV~ 605 (1118)
|-+|+++.=..+.+++|.||||+|||||||.|+.. +. ..|.+.... .-.++|..|....+. ..++.
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la---~~G~~v~a~--------~~~~~~~d~i~~~l~~~~si~ 86 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLA---HIGSFVPAD--------SATIGLVDKIFTRMSSRESVS 86 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHH---hCCCeeEcC--------CcEEeeeeeeeeeeCCccChh
Confidence 44455543112389999999999999999999842 22 234433211 234677777533221 11221
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048718 606 ENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLD 685 (1118)
Q Consensus 606 EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD 685 (1118)
+++ +. . .-|.||++++++++.+|+++|+|||++|+|
T Consensus 87 ~~~------------------------------S~----f----------~~el~~l~~~l~~~~~~slvllDE~~~gtd 122 (213)
T cd03281 87 SGQ------------------------------SA----F----------MIDLYQVSKALRLATRRSLVLIDEFGKGTD 122 (213)
T ss_pred hcc------------------------------ch----H----------HHHHHHHHHHHHhCCCCcEEEeccccCCCC
Confidence 111 10 0 245699999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHC---CCEEEEEEcCCcHH
Q 048718 686 SSSSQLL-LRALRREALE---GVNICTVVHQPSYA 716 (1118)
Q Consensus 686 ~~sa~~i-~~~Lr~la~~---G~TIIvvtHq~~~~ 716 (1118)
+.....+ ...|+.+.+. +.++|++||+++..
T Consensus 123 ~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~ 157 (213)
T cd03281 123 TEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELF 157 (213)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHH
Confidence 9765555 4578887654 34899999997653
No 422
>PRK00064 recF recombination protein F; Reviewed
Probab=99.29 E-value=6.3e-11 Score=137.20 Aligned_cols=77 Identities=25% Similarity=0.339 Sum_probs=61.6
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhcc-
Q 048718 652 RGISGGQRKRVNVGLEMV---------MEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMF- 721 (1118)
Q Consensus 652 rgLSGGERQRVsIArALl---------~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~- 721 (1118)
..+|+||+|++.||+.|+ .+|+||+||||+++||+..+..+++.|.++ +..+++++|+... +...+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~~-~~~~~~ 347 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLED-LADLLE 347 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChhh-hhhhhc
Confidence 458999999999999886 799999999999999999999999888653 4578899998654 33333
Q ss_pred -CcEEEEecCcEE
Q 048718 722 -DDLILLAKGGVI 733 (1118)
Q Consensus 722 -D~vivL~~GG~i 733 (1118)
++++.|.+ |++
T Consensus 348 ~~~i~~v~~-G~i 359 (361)
T PRK00064 348 NAKIFHVEQ-GKI 359 (361)
T ss_pred cCcEEEEeC-CEE
Confidence 46777765 554
No 423
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.27 E-value=6.3e-12 Score=121.27 Aligned_cols=74 Identities=19% Similarity=0.171 Sum_probs=62.0
Q ss_pred ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcCeEEEEcCCCCCCCCCC
Q 048718 527 KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKRIIGFVPQDDIVHGNLT 603 (1118)
Q Consensus 527 k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~IgyV~Qd~~l~~~LT 603 (1118)
+.+|+++++++++||+++|+||||||||||+++|. +|+|.++|.++.. ...++.++|++|+ +| ..|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~--------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf-~~t 70 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI--------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GL-EIR 70 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh--------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cc-hhh
Confidence 46899999999999999999999999999999986 5889999987632 3455667888887 44 359
Q ss_pred HHHHHHHH
Q 048718 604 VEENLWFS 611 (1118)
Q Consensus 604 V~EnL~f~ 611 (1118)
|+|||.++
T Consensus 71 i~~Ni~~~ 78 (107)
T cd00820 71 LRLNIFLI 78 (107)
T ss_pred HHhhceee
Confidence 99999884
No 424
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.26 E-value=1.8e-11 Score=131.32 Aligned_cols=88 Identities=25% Similarity=0.386 Sum_probs=63.8
Q ss_pred HHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC
Q 048718 628 VVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMV----MEPSLLILDEPTSGLDSSSSQLLLRALRREALEG 703 (1118)
Q Consensus 628 ~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl----~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G 703 (1118)
.+.+.+..+++... .||||||.+++||.-|+ ...++++|||+.++||...+..+.+.|+++.+ +
T Consensus 122 ~~~~~l~~~~i~~~-----------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~-~ 189 (220)
T PF02463_consen 122 DLEELLPEVGISPE-----------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK-Q 189 (220)
T ss_dssp HHHHHHHCTTTTTT-----------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-T
T ss_pred cccccccccccccc-----------ccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence 34555665555432 39999999999997664 57899999999999999999999999998764 4
Q ss_pred CEEEEEEcCCcHHHHhccCcEEEEec
Q 048718 704 VNICTVVHQPSYALFRMFDDLILLAK 729 (1118)
Q Consensus 704 ~TIIvvtHq~~~~i~~~~D~vivL~~ 729 (1118)
.-+|++||++. ++..+|+.+.+..
T Consensus 190 ~Q~ii~Th~~~--~~~~a~~~~~v~~ 213 (220)
T PF02463_consen 190 SQFIITTHNPE--MFEDADKLIGVTM 213 (220)
T ss_dssp SEEEEE-S-HH--HHTT-SEEEEEEE
T ss_pred ccccccccccc--ccccccccccccc
Confidence 67999999965 5688998877654
No 425
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.25 E-value=1.2e-11 Score=140.65 Aligned_cols=169 Identities=27% Similarity=0.259 Sum_probs=118.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEE-----E------ECCEecChhhhcCe-------EEEEcCCCCCC
Q 048718 538 SPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTI-----L------VNGKVASIQSYKRI-------IGFVPQDDIVH 599 (1118)
Q Consensus 538 ~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I-----~------inG~~~~~~~~r~~-------IgyV~Qd~~l~ 599 (1118)
+||++++++|.||-||||-|++|+|.+++ .-|.- + +.|..+ ..+..+ .-.=||.-..+
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kp--nlg~~~~pp~w~~il~~frgsel--q~yftk~le~~lk~~~kpQyvd~i 173 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKP--NLGRYDNPPDWQEILTYFRGSEL--QNYFTKILEDNLKAIIKPQYVDQI 173 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCC--CCCCCCCCcchHHHhhhhhhHHH--hhhhhhhccccccCcCChHHHHHH
Confidence 58999999999999999999999999874 22210 0 001000 000000 00011111111
Q ss_pred C---CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 048718 600 G---NLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLI 676 (1118)
Q Consensus 600 ~---~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLl 676 (1118)
| ..+|.++|.- ...+...+++++.+.|.+..++-+.. |||||.||.+||.+-+.++++.+
T Consensus 174 pr~~k~~v~~~l~~------------~~~r~~~~~~~~~~~L~~~~~re~~~-----lsggelqrfaia~~~vq~advyM 236 (592)
T KOG0063|consen 174 PRAVKGTVGSLLDR------------KDERDNKEEVCDQLDLNNLLDREVEQ-----LSGGELQRFAIAMVCVQKADVYM 236 (592)
T ss_pred HHHHHHHHHHHHHH------------HhhcccHHHHHHHHHHhhHHHhhhhh-----cccchhhhhhhhhhhhhhcceeE
Confidence 1 1133333321 11223467788888999888887766 99999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEe
Q 048718 677 LDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLA 728 (1118)
Q Consensus 677 LDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~ 728 (1118)
+|||.+-||...+..-...||.+..-..=||+|.||++. +--+.|-+..|.
T Consensus 237 FDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsV-LDylSDFiCcLY 287 (592)
T KOG0063|consen 237 FDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSV-LDYLSDFICCLY 287 (592)
T ss_pred ecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechH-HHhhhcceeEEe
Confidence 999999999999999999999998778899999999985 344677777775
No 426
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.20 E-value=1.1e-10 Score=126.63 Aligned_cols=135 Identities=17% Similarity=0.206 Sum_probs=89.2
Q ss_pred ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC-CCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHH
Q 048718 527 KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRV-PGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVE 605 (1118)
Q Consensus 527 k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~-~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~ 605 (1118)
+.+.+|+++.+.+|++++|+||||+||||||++|++.. . +..|.....- .-.++|..| ++-.+...
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~l--a~~G~~v~a~--------~~~~~~~~~---i~~~~~~~ 84 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIM--AQIGSFVPAS--------SATLSIFDS---VLTRMGAS 84 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHH--HhCCCEEEcC--------ceEEeccce---EEEEecCc
Confidence 56899999999999999999999999999999999943 2 3455543221 112333222 11111111
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCC--HHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 048718 606 ENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGIS--GGQRKRVNVGLEMVMEPSLLILDEPTSG 683 (1118)
Q Consensus 606 EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLS--GGERQRVsIArALl~~P~lLlLDEPTsG 683 (1118)
|++.- ++| ..|-+|++-....+.+++++|+|||.+|
T Consensus 85 d~~~~------------------------------------------~~StF~~e~~~~~~il~~~~~~sLvllDE~~~g 122 (222)
T cd03287 85 DSIQH------------------------------------------GMSTFMVELSETSHILSNCTSRSLVILDELGRG 122 (222)
T ss_pred ccccc------------------------------------------ccchHHHHHHHHHHHHHhCCCCeEEEEccCCCC
Confidence 11100 011 2344555555555678999999999999
Q ss_pred CCHHHHHHH-HHHHHHHHHC-CCEEEEEEcCCcHH
Q 048718 684 LDSSSSQLL-LRALRREALE-GVNICTVVHQPSYA 716 (1118)
Q Consensus 684 LD~~sa~~i-~~~Lr~la~~-G~TIIvvtHq~~~~ 716 (1118)
.|+.....+ ...++.+.+. +.++|++||+++..
T Consensus 123 T~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~ 157 (222)
T cd03287 123 TSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLG 157 (222)
T ss_pred CChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHH
Confidence 987777665 4566777765 88999999998753
No 427
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.20 E-value=2.4e-11 Score=129.78 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 048718 658 QRKRVNVGLEMVMEPSLLILDEPT-----SGLDSSSSQLLLRALRREAL 701 (1118)
Q Consensus 658 ERQRVsIArALl~~P~lLlLDEPT-----sGLD~~sa~~i~~~Lr~la~ 701 (1118)
|++++.||++++.+|+++++|||| +|||+.++..+.+.|++++.
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 99999999999999999864
No 428
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.12 E-value=6.6e-11 Score=148.69 Aligned_cols=79 Identities=19% Similarity=0.207 Sum_probs=62.3
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCc
Q 048718 653 GISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLR-ALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGG 731 (1118)
Q Consensus 653 gLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~-~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG 731 (1118)
.+|+||+|++.|++++ .+|+++|+|||++|+|+.....+.. +|..+...|.++|++||+++... ...++..++ + +
T Consensus 390 tfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~-~~~~~~~v~-~-~ 465 (782)
T PRK00409 390 TFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKA-LMYNREGVE-N-A 465 (782)
T ss_pred HHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHH-HHhcCCCeE-E-E
Confidence 3999999999999998 8999999999999999999988865 56667677899999999976543 334444444 2 3
Q ss_pred EEEE
Q 048718 732 VIVY 735 (1118)
Q Consensus 732 ~iv~ 735 (1118)
.+.+
T Consensus 466 ~~~~ 469 (782)
T PRK00409 466 SVEF 469 (782)
T ss_pred EEEE
Confidence 4444
No 429
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.11 E-value=1.4e-10 Score=140.88 Aligned_cols=77 Identities=27% Similarity=0.439 Sum_probs=67.9
Q ss_pred CCCCHHHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhc
Q 048718 652 RGISGGQRKRVNVGLEMV----------MEPSLLILDEPT-SGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRM 720 (1118)
Q Consensus 652 rgLSGGERQRVsIArALl----------~~P~lLlLDEPT-sGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~ 720 (1118)
..|||||||||+||++|+ .+|++||||||| ++||+.....+.+.|+.+ .|.+||++||++.. ...
T Consensus 467 ~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~~--~~~ 542 (562)
T PHA02562 467 ASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDHD--PQK 542 (562)
T ss_pred hhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchhc--hhh
Confidence 359999999999999887 599999999998 789999999999999988 58899999999753 467
Q ss_pred cCcEEEEecCcE
Q 048718 721 FDDLILLAKGGV 732 (1118)
Q Consensus 721 ~D~vivL~~GG~ 732 (1118)
+|++++|.+.|.
T Consensus 543 ~d~~~~l~~~~~ 554 (562)
T PHA02562 543 FDRHLKMEKVGR 554 (562)
T ss_pred hhcEEEEEEECC
Confidence 999999987443
No 430
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.08 E-value=1.4e-09 Score=118.61 Aligned_cols=148 Identities=20% Similarity=0.231 Sum_probs=90.7
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHH-HHHHHcCCCCCCceeEEEECCEecChhhhcCeE
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTF-LSALKGRVPGCIMSGTILVNGKVASIQSYKRII 589 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTL-LkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~I 589 (1118)
+.+.+++|...+.+ -+++|++++|.|+||+||||| ++.+.+..+. | ..+
T Consensus 6 ~~~~~~~ld~~l~g-----------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~----g---------------~~~ 55 (230)
T PRK08533 6 IELSRDELHKRLGG-----------GIPAGSLILIEGDESTGKSILSQRLAYGFLQN----G---------------YSV 55 (230)
T ss_pred EEEEEeeeehhhCC-----------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC----C---------------CcE
Confidence 44556666665532 268999999999999999999 7888887541 1 123
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 048718 590 GFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMV 669 (1118)
Q Consensus 590 gyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl 669 (1118)
.|+.. ..|..+.+.....+.. + +++.... +.-...+.. ..+|+++.++..+.+.+-
T Consensus 56 ~yi~~------e~~~~~~~~~~~~~g~--~---------~~~~~~~-~~l~~~~~~------~~~~~~~~~~~~l~~il~ 111 (230)
T PRK08533 56 SYVST------QLTTTEFIKQMMSLGY--D---------INKKLIS-GKLLYIPVY------PLLSGNSEKRKFLKKLMN 111 (230)
T ss_pred EEEeC------CCCHHHHHHHHHHhCC--c---------hHHHhhc-CcEEEEEec------ccccChHHHHHHHHHHHH
Confidence 44432 2355555554432211 1 1111110 100011111 126777665555444333
Q ss_pred h----CCCEEEEeCCCCCC----CHHHHHHHHHHHHHHHHCCCEEEEEEcC
Q 048718 670 M----EPSLLILDEPTSGL----DSSSSQLLLRALRREALEGVNICTVVHQ 712 (1118)
Q Consensus 670 ~----~P~lLlLDEPTsGL----D~~sa~~i~~~Lr~la~~G~TIIvvtHq 712 (1118)
. +|+++++||||+++ |+....++.+.|+.+++.|.|+++++|.
T Consensus 112 ~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~~ 162 (230)
T PRK08533 112 TRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTANP 162 (230)
T ss_pred HHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 3 69999999999999 8888888999999888778877665543
No 431
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.08 E-value=2.1e-09 Score=126.99 Aligned_cols=171 Identities=19% Similarity=0.257 Sum_probs=113.4
Q ss_pred ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEec---C--------hhhhcCeEEEEcCC
Q 048718 527 KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVA---S--------IQSYKRIIGFVPQD 595 (1118)
Q Consensus 527 k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~---~--------~~~~r~~IgyV~Qd 595 (1118)
..+++++ +.+.+|+.++|+|+||+|||||+++|+|+.+ ++.|.|.+.|+.. . ...+++.|++|.+.
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~--~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~ 222 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS--ADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATS 222 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC--CCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECC
Confidence 5689999 9999999999999999999999999999987 5789999966432 1 12356778999875
Q ss_pred CCCCCCCCHHHHH--HHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCccCCCCC-HHHHHH-HHHHHHHh
Q 048718 596 DIVHGNLTVEENL--WFSARCRLSADLPKAEKVLVVERVIESLGLQH--IRDSLVGTVEKRGIS-GGQRKR-VNVGLEMV 669 (1118)
Q Consensus 596 ~~l~~~LTV~EnL--~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~--~~dt~vg~~~~rgLS-GGERQR-VsIArALl 669 (1118)
+.- +.+-+ .+.+ ..+.+.+..-|-.- ..|. |+ --|-+| +++ ++
T Consensus 223 ~~~-----~~~r~~~~~~a--------------~~iAEyfr~~g~~Vll~~Ds---------ltr~A~A~rEisl---~~ 271 (438)
T PRK07721 223 DQP-----ALMRIKGAYTA--------------TAIAEYFRDQGLNVMLMMDS---------VTRVAMAQREIGL---AV 271 (438)
T ss_pred CCC-----HHHHHHHHHHH--------------HHHHHHHHHCCCcEEEEEeC---------hHHHHHHHHHHHH---hc
Confidence 432 11111 1111 01112222223110 1111 11 011111 111 12
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--CCC-----EEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhh
Q 048718 670 MEPSLLILDEPTSGLDSSSSQLLLRALRREAL--EGV-----NICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKK 741 (1118)
Q Consensus 670 ~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~--~G~-----TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~ 741 (1118)
.+|+ .|+|+|+....++.+.++++.. .|. ||++.+||++. ..+|++.++.+ |+++..+...+
T Consensus 272 ge~P------~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~d-G~Ivls~~la~ 340 (438)
T PRK07721 272 GEPP------TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILD-GHFVLDRQLAN 340 (438)
T ss_pred CCCC------ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecC-EEEEEeccHHH
Confidence 2332 4789999999999999999873 575 99999999984 57999999976 69999988654
No 432
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.07 E-value=2.3e-10 Score=139.69 Aligned_cols=76 Identities=26% Similarity=0.369 Sum_probs=68.5
Q ss_pred CCCCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEE
Q 048718 652 RGISGGQRKRVNVGLEMVME----PSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILL 727 (1118)
Q Consensus 652 rgLSGGERQRVsIArALl~~----P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL 727 (1118)
+.+||||+|||+||++++.. |++|||||||+|||+.++..+.+.|+++++ +.+||++||++... ..+|++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~~~--~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQVA--AHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHHHH--HhcCeEEEE
Confidence 35899999999999999985 699999999999999999999999999874 89999999998643 689999999
Q ss_pred ecC
Q 048718 728 AKG 730 (1118)
Q Consensus 728 ~~G 730 (1118)
.++
T Consensus 516 ~k~ 518 (563)
T TIGR00634 516 EKE 518 (563)
T ss_pred EEc
Confidence 763
No 433
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.06 E-value=3.8e-10 Score=146.74 Aligned_cols=79 Identities=19% Similarity=0.243 Sum_probs=70.7
Q ss_pred CCCCCHHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhc
Q 048718 651 KRGISGGQRKRVNVGLEMVM----------EPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRM 720 (1118)
Q Consensus 651 ~rgLSGGERQRVsIArALl~----------~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~ 720 (1118)
++.|||||++||+||++|+. +|++||+||||+|||+.+...++++|+.+...|++|++|||++.. ....
T Consensus 948 ~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~-~~~~ 1026 (1042)
T TIGR00618 948 SATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEF-RERI 1026 (1042)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHH-HHhh
Confidence 34599999999999999986 799999999999999999999999999998789999999999876 4577
Q ss_pred cCcEEEEecC
Q 048718 721 FDDLILLAKG 730 (1118)
Q Consensus 721 ~D~vivL~~G 730 (1118)
+|+|+|+..+
T Consensus 1027 ~~~i~v~~~~ 1036 (1042)
T TIGR00618 1027 PHRILVKKTN 1036 (1042)
T ss_pred CCEEEEEECC
Confidence 8888888643
No 434
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.06 E-value=4.1e-10 Score=117.97 Aligned_cols=63 Identities=21% Similarity=0.399 Sum_probs=53.4
Q ss_pred CCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCc
Q 048718 652 RGISGGQRKRVNVGLEMVMEP---SLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPS 714 (1118)
Q Consensus 652 rgLSGGERQRVsIArALl~~P---~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~ 714 (1118)
..+|.|++|.+.|+..|...+ .++++|||-++|+|..+..+++.|+.+...+.-+|++||.|.
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 347999999999999988777 899999999999999999999999877665788999999975
No 435
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.05 E-value=1.3e-09 Score=113.15 Aligned_cols=145 Identities=21% Similarity=0.147 Sum_probs=95.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC-CCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGR-VPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADL 620 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl-~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~ 620 (1118)
++.|.||+|+|||||.--++-. .. +| ..+.|+.= ..|..+.+.....+ +.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~----------~g---------~~v~~~s~------e~~~~~~~~~~~~~----g~ 51 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLA----------RG---------EPGLYVTL------EESPEELIENAESL----GW 51 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH----------CC---------CcEEEEEC------CCCHHHHHHHHHHc----CC
Confidence 3689999999999988755432 11 01 12334321 22444444443322 11
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHH
Q 048718 621 PKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRK------RVNVGLEMVMEPSLLILDEPTSGLD---SSSSQL 691 (1118)
Q Consensus 621 ~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQ------RVsIArALl~~P~lLlLDEPTsGLD---~~sa~~ 691 (1118)
.. ++ +...|+....+..+. .+|+|++| +.........+|+++++||||+.+| ......
T Consensus 52 ~~-------~~-l~~~g~l~~~d~~~~-----~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~ 118 (187)
T cd01124 52 DL-------ER-LEDEGLLAIVDADPD-----EIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLE 118 (187)
T ss_pred Ch-------HH-HHhcCCeEEEecCcc-----ccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHH
Confidence 11 11 223444444454443 48999998 4555555667999999999999999 888888
Q ss_pred HHHHHHHHHHCCCEEEEEEcCCcH--------HHHhccCcEEEEe
Q 048718 692 LLRALRREALEGVNICTVVHQPSY--------ALFRMFDDLILLA 728 (1118)
Q Consensus 692 i~~~Lr~la~~G~TIIvvtHq~~~--------~i~~~~D~vivL~ 728 (1118)
+.+.++.+++.|.|+|+++|+... .+..++|.++.|.
T Consensus 119 i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 119 IRRLLFALKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred HHHHHHHHHHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 888898888889999999998653 1456788888885
No 436
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.05 E-value=4.1e-11 Score=132.01 Aligned_cols=180 Identities=17% Similarity=0.176 Sum_probs=102.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEEC--CE-ecChhhhcC---eEEEEcCCCCCCCCC---CHHH
Q 048718 536 KLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVN--GK-VASIQSYKR---IIGFVPQDDIVHGNL---TVEE 606 (1118)
Q Consensus 536 ~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~in--G~-~~~~~~~r~---~IgyV~Qd~~l~~~L---TV~E 606 (1118)
.+..||.++|+||+|+|||||++.|.+.......+..+.+- |. ..+..++.+ .+-++-+-+. .+.. ..+.
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~~~~~~~~~~~ 90 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-PPERHVQVAEM 90 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-CHHHHHHHHHH
Confidence 56799999999999999999999999987521112232221 21 122222221 1222333222 1100 0001
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH--------HHHHHHHHHHhhCCCEEEEe
Q 048718 607 NLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQ--------RKRVNVGLEMVMEPSLLILD 678 (1118)
Q Consensus 607 nL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGE--------RQRVsIArALl~~P~lLlLD 678 (1118)
-+..+...+. .+..- .-.+|++- .+....++.++. ..+.+|||+ +||+++||++..+++|.+|
T Consensus 91 ~~~~a~~~~~-~G~~v---ll~iDei~---r~a~a~~ev~~~-~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l- 161 (249)
T cd01128 91 VLEKAKRLVE-HGKDV---VILLDSIT---RLARAYNTVVPP-SGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII- 161 (249)
T ss_pred HHHHHHHHHH-CCCCE---EEEEECHH---Hhhhhhhhcccc-CCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe-
Confidence 1111111100 00000 00000000 111222333332 334589999 9999999999999999999
Q ss_pred CCCCCCCHHHHHH-HHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecC
Q 048718 679 EPTSGLDSSSSQL-LLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKG 730 (1118)
Q Consensus 679 EPTsGLD~~sa~~-i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~G 730 (1118)
||+.+|+.+... ++ +..+...+.|.|+++|++.. ...+|.|.+|..|
T Consensus 162 -~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~--~~~~paI~vl~s~ 209 (249)
T cd01128 162 -ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAE--RRIFPAIDILKSG 209 (249)
T ss_pred -eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhh--CCCCCeEEEcCCC
Confidence 999999755544 54 44444457899999999764 4789999999875
No 437
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.05 E-value=1.9e-09 Score=131.07 Aligned_cols=136 Identities=25% Similarity=0.414 Sum_probs=103.6
Q ss_pred CCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHH------HHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhhCC
Q 048718 600 GNLTVEENLWFSARCRLSADLPKAEKVLVVERV------IESLGLQHI-RDSLVGTVEKRGISGGQRKRVNVGLEMVMEP 672 (1118)
Q Consensus 600 ~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~l------L~~lgL~~~-~dt~vg~~~~rgLSGGERQRVsIArALl~~P 672 (1118)
..|++.|.+.|...+.+.. ......+..+.++ |..+||... .++..++ |||||.||+-||..+=++=
T Consensus 427 ~~msi~~~~~f~~~l~l~~-~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a~T-----LSGGEaQRIRLAtqiGS~L 500 (935)
T COG0178 427 SEMSIADALEFFENLKLSE-KEKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAGT-----LSGGEAQRIRLATQIGSGL 500 (935)
T ss_pred hhccHHHHHHHHHhCCCch-hhHHHHHHHHHHHHHHHHHHHHcCcCcccccccCCC-----cChhHHHHHHHHHHhcccc
Confidence 4578889888887665322 1111122223333 334577643 4555554 9999999999999987653
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEe-----cCcEEEEecChhhHH
Q 048718 673 --SLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLA-----KGGVIVYHGPVKKVE 743 (1118)
Q Consensus 673 --~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~-----~GG~iv~~G~~~~l~ 743 (1118)
=+++||||+-||-+..-.++++.|++|+..|-|+|+|.||.+ ..+.+|.++=|. +||+|++.|+++++.
T Consensus 501 tGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDed--ti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~ 576 (935)
T COG0178 501 TGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDED--TIRAADHIIDIGPGAGEHGGEIVAEGTPEELL 576 (935)
T ss_pred eeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHH--HHhhcCEEEeeCCCCCcCCCEEEEccCHHHHH
Confidence 467999999999999999999999999999999999999964 558899998874 579999999999885
No 438
>PRK10869 recombination and repair protein; Provisional
Probab=99.04 E-value=4.7e-10 Score=136.46 Aligned_cols=75 Identities=21% Similarity=0.367 Sum_probs=68.1
Q ss_pred CCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEe
Q 048718 653 GISGGQRKRVNVGLEMVM----EPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLA 728 (1118)
Q Consensus 653 gLSGGERQRVsIArALl~----~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~ 728 (1118)
.+||||+|||+||++++. +|+++|+|||++|||..++..+.+.|++++. +.+||+|||++.. ...+|+++++.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~~--~~~ad~~~~v~ 506 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQV--AGCGHQHFFVS 506 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHH--HHhCCEEEEEe
Confidence 489999999999999997 5899999999999999999999999999864 6899999999864 47999999997
Q ss_pred cC
Q 048718 729 KG 730 (1118)
Q Consensus 729 ~G 730 (1118)
++
T Consensus 507 k~ 508 (553)
T PRK10869 507 KE 508 (553)
T ss_pred cc
Confidence 63
No 439
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.03 E-value=4e-10 Score=122.02 Aligned_cols=139 Identities=17% Similarity=0.142 Sum_probs=91.1
Q ss_pred cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHH
Q 048718 526 NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVE 605 (1118)
Q Consensus 526 ~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~ 605 (1118)
++.+-+|+++.+++|++++|.||||+|||||+++|++..-- ...| -.+..+ ...++++ +.+|..+...
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~l-a~~G------~~vpa~--~~~i~~~---~~i~~~~~~~ 83 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIM-AQMG------MDVPAK--SMRLSLV---DRIFTRIGAR 83 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHH-HHcC------CccCcc--ccEeccc---cEEEEecCcc
Confidence 35789999999999999999999999999999999986320 0011 111111 1112221 1222222223
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048718 606 ENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLD 685 (1118)
Q Consensus 606 EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD 685 (1118)
|++..+. +. + .-|-+|++-....+.+|+++++|||.+|+|
T Consensus 84 d~~~~~~--------------------------St-------------F-~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~ 123 (218)
T cd03286 84 DDIMKGE--------------------------ST-------------F-MVELSETANILRHATPDSLVILDELGRGTS 123 (218)
T ss_pred cccccCc--------------------------ch-------------H-HHHHHHHHHHHHhCCCCeEEEEecccCCCC
Confidence 3322110 00 0 124455555555567899999999999999
Q ss_pred HHHHHHHHHH-HHHHHHC-CCEEEEEEcCCcHH
Q 048718 686 SSSSQLLLRA-LRREALE-GVNICTVVHQPSYA 716 (1118)
Q Consensus 686 ~~sa~~i~~~-Lr~la~~-G~TIIvvtHq~~~~ 716 (1118)
+.....+... ++.+.+. +.++|++||+++..
T Consensus 124 ~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~ 156 (218)
T cd03286 124 THDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLC 156 (218)
T ss_pred chHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 9999999888 7777765 89999999997753
No 440
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.92 E-value=3.1e-09 Score=106.26 Aligned_cols=63 Identities=24% Similarity=0.205 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHH
Q 048718 654 ISGGQRKRVNVGLEMVMEPSLLILDEPTS----------GLDSSSSQLLLRALRREALEGVNICTVVHQPSYA 716 (1118)
Q Consensus 654 LSGGERQRVsIArALl~~P~lLlLDEPTs----------GLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~ 716 (1118)
.+.++.+++..+++...+|+++++||+++ ++|......+.+++....+.+.|+|+++|.....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 45666778888999999999999999995 4555555666665555445699999999987644
No 441
>PRK03918 chromosome segregation protein; Provisional
Probab=98.91 E-value=2.6e-09 Score=136.68 Aligned_cols=77 Identities=30% Similarity=0.333 Sum_probs=67.5
Q ss_pred CCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcE
Q 048718 651 KRGISGGQRK------RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDL 724 (1118)
Q Consensus 651 ~rgLSGGERQ------RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~v 724 (1118)
+..|||||++ |++||++++.+|+++||||||+|||+..+..+.+.|+.+...+.+||++||++. +...+|++
T Consensus 786 ~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~--~~~~~d~~ 863 (880)
T PRK03918 786 LTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEE--LKDAADYV 863 (880)
T ss_pred hhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHH--HHHhCCeE
Confidence 4569999999 555666888999999999999999999999999999988766889999999975 45789999
Q ss_pred EEEec
Q 048718 725 ILLAK 729 (1118)
Q Consensus 725 ivL~~ 729 (1118)
++|.+
T Consensus 864 ~~l~~ 868 (880)
T PRK03918 864 IRVSL 868 (880)
T ss_pred EEEEe
Confidence 99984
No 442
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.90 E-value=1.4e-09 Score=141.28 Aligned_cols=76 Identities=26% Similarity=0.291 Sum_probs=64.5
Q ss_pred CCCCCHHHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccC
Q 048718 651 KRGISGGQRKRVNVGLEMVM--------EPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFD 722 (1118)
Q Consensus 651 ~rgLSGGERQRVsIArALl~--------~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D 722 (1118)
++.|||||+++|+||++|+. +|++||+||||++||+.+...+++.|+.+...|++|++|||.... .+..+
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l--~~~i~ 1024 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAM--KERIP 1024 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHH--HHhcc
Confidence 34599999999999999996 899999999999999999999999999998889999999997543 34444
Q ss_pred cEEEEe
Q 048718 723 DLILLA 728 (1118)
Q Consensus 723 ~vivL~ 728 (1118)
..|.+.
T Consensus 1025 ~qi~V~ 1030 (1047)
T PRK10246 1025 VQIKVK 1030 (1047)
T ss_pred ceEEEE
Confidence 334443
No 443
>PRK13695 putative NTPase; Provisional
Probab=98.89 E-value=8.2e-10 Score=114.72 Aligned_cols=78 Identities=12% Similarity=0.119 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecC
Q 048718 653 GISGGQRKRVNVGLEMVMEPSLLILDEP--TSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKG 730 (1118)
Q Consensus 653 gLSGGERQRVsIArALl~~P~lLlLDEP--TsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~G 730 (1118)
.+||+++-++.+++..+.+|+++++||| +.++|. .+.+.|..+.+.|.++|+++|+.. +....|++..+.+
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~----~~~~~l~~~~~~~~~~i~v~h~~~--~~~~~~~i~~~~~- 150 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKSP----KFVKAVEEVLDSEKPVIATLHRRS--VHPFVQEIKSRPG- 150 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhH----HHHHHHHHHHhCCCeEEEEECchh--hHHHHHHHhccCC-
Confidence 3999999999999999999999999995 445543 345666666667899999999853 3467899888865
Q ss_pred cEEEEec
Q 048718 731 GVIVYHG 737 (1118)
Q Consensus 731 G~iv~~G 737 (1118)
|++++.-
T Consensus 151 ~~i~~~~ 157 (174)
T PRK13695 151 GRVYELT 157 (174)
T ss_pred cEEEEEc
Confidence 6776653
No 444
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.84 E-value=8.1e-09 Score=117.29 Aligned_cols=143 Identities=18% Similarity=0.173 Sum_probs=91.5
Q ss_pred eeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEe-cChhhhcCeEEEEcCCCCCCCCCCHHHHHHH
Q 048718 532 SVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKV-ASIQSYKRIIGFVPQDDIVHGNLTVEENLWF 610 (1118)
Q Consensus 532 nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~-~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f 610 (1118)
=+++.++.|+.++|.||+|||||||+++|+++++ +..|.|.+.... .... .+..+.++.+...-
T Consensus 136 ~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~--~~~~iv~ied~~El~~~-~~~~~~l~~~~~~~------------ 200 (308)
T TIGR02788 136 FLRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP--KDERIITIEDTREIFLP-HPNYVHLFYSKGGQ------------ 200 (308)
T ss_pred HHHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC--ccccEEEEcCccccCCC-CCCEEEEEecCCCC------------
Confidence 3567788999999999999999999999999997 456777664321 0000 01222222211000
Q ss_pred HHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048718 611 SARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQ 690 (1118)
Q Consensus 611 ~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~ 690 (1118)
+ ...++ ..-.++.+|-.+|+++++|||.+ .
T Consensus 201 ------------------------------------~---~~~~~----~~~~l~~~Lr~~pd~ii~gE~r~-------~ 230 (308)
T TIGR02788 201 ------------------------------------G---LAKVT----PKDLLQSCLRMRPDRIILGELRG-------D 230 (308)
T ss_pred ------------------------------------C---cCccC----HHHHHHHHhcCCCCeEEEeccCC-------H
Confidence 0 00011 11245567778999999999996 3
Q ss_pred HHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 691 LLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 691 ~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
++.+.|+.+...+.+++.++|..+. .+..||++.|.. |++...|.+.++
T Consensus 231 e~~~~l~a~~~g~~~~i~T~Ha~~~--~~~~~Rl~~l~~-~~~~~~g~~~~~ 279 (308)
T TIGR02788 231 EAFDFIRAVNTGHPGSITTLHAGSP--EEAFEQLALMVK-SSQAGLGLDFAY 279 (308)
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCCH--HHHHHHHHHHhh-ccccccCCCHHH
Confidence 4556666665333467999999884 356899988866 466666766554
No 445
>PRK01156 chromosome segregation protein; Provisional
Probab=98.81 E-value=1.9e-08 Score=129.29 Aligned_cols=79 Identities=24% Similarity=0.307 Sum_probs=67.3
Q ss_pred CCCCCHHHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HC-C-CEEEEEEcCCcHHHHhcc
Q 048718 651 KRGISGGQRKRVNV------GLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREA-LE-G-VNICTVVHQPSYALFRMF 721 (1118)
Q Consensus 651 ~rgLSGGERQRVsI------ArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la-~~-G-~TIIvvtHq~~~~i~~~~ 721 (1118)
+..|||||++||+| |++|+.+|++++|||||++||+.....+.+.|+... .. | .++|++||++.. ...+
T Consensus 799 ~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~--~~~~ 876 (895)
T PRK01156 799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHREL--LSVA 876 (895)
T ss_pred cccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHH--HHhc
Confidence 55699999999975 589999999999999999999999999999998644 33 3 489999999874 3789
Q ss_pred CcEEEEec-Cc
Q 048718 722 DDLILLAK-GG 731 (1118)
Q Consensus 722 D~vivL~~-GG 731 (1118)
|+++.+.. ||
T Consensus 877 d~ii~~~~~~~ 887 (895)
T PRK01156 877 DVAYEVKKSSG 887 (895)
T ss_pred CeEEEEEecCC
Confidence 99999984 55
No 446
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.80 E-value=5e-08 Score=124.03 Aligned_cols=78 Identities=22% Similarity=0.202 Sum_probs=62.4
Q ss_pred HhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHH--------HhccCcEEEEecCcEEEEecC
Q 048718 668 MVMEPSLLILDEPTSGL-DSSSSQLLLRALRREALEGVNICTVVHQPSYAL--------FRMFDDLILLAKGGVIVYHGP 738 (1118)
Q Consensus 668 Ll~~P~lLlLDEPTsGL-D~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i--------~~~~D~vivL~~GG~iv~~G~ 738 (1118)
+..+|.++++|||+.+| |+..+..+.+.++.+++.|.+++++||+++... .+.+|.+++|.+ |++...|.
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n-~~a~~~~~ 727 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPN-GAAREPGT 727 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCC-ccccccch
Confidence 35799999999999999 799999999999999888999999999987642 367898998865 56655553
Q ss_pred hhhHHHHHHhcC
Q 048718 739 VKKVEEYFASLG 750 (1118)
Q Consensus 739 ~~~l~~yf~~lG 750 (1118)
. ++.+.+|
T Consensus 728 ~----~~~~~~g 735 (818)
T PRK13830 728 R----EFYERIG 735 (818)
T ss_pred H----HHHHHcC
Confidence 3 3445555
No 447
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.80 E-value=8.3e-09 Score=137.14 Aligned_cols=65 Identities=23% Similarity=0.387 Sum_probs=58.7
Q ss_pred CCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----CCCEEEEEEcCCcHH
Q 048718 652 RGISGGQRK------RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREAL-----EGVNICTVVHQPSYA 716 (1118)
Q Consensus 652 rgLSGGERQ------RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~-----~G~TIIvvtHq~~~~ 716 (1118)
..||||||| |++||++|+.+|++|+|||||+|||+.+...+.+.|..+.. .|.+||+|||++...
T Consensus 1198 ~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~ 1273 (1311)
T TIGR00606 1198 GRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFV 1273 (1311)
T ss_pred CCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHH
Confidence 359999999 99999999999999999999999999999999999888742 378999999998753
No 448
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.77 E-value=2.5e-08 Score=117.45 Aligned_cols=169 Identities=17% Similarity=0.133 Sum_probs=113.3
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFV 592 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV 592 (1118)
++-+.++..+.. +.++++++ +.+.+|+.++|+|+||+|||||+++|+|..+ ++.|.|.+.|+.
T Consensus 131 ~~r~~i~~~l~T-GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~--~~~gvI~~iGer------------- 193 (432)
T PRK06793 131 FEREEITDVFET-GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK--ADINVISLVGER------------- 193 (432)
T ss_pred hheechhhccCC-CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCC--CCeEEEEeCCCC-------------
Confidence 344555555542 35688885 9999999999999999999999999999986 466766555532
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh---
Q 048718 593 PQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMV--- 669 (1118)
Q Consensus 593 ~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl--- 669 (1118)
..+|.|.+..-+. .-|+.+. ..+ .....-|.|+|+|+..+.+.+
T Consensus 194 --------g~ev~e~~~~~l~---------------------~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~~iAEy 240 (432)
T PRK06793 194 --------GREVKDFIRKELG---------------------EEGMRKS--VVV--VATSDESHLMQLRAAKLATSIAEY 240 (432)
T ss_pred --------cccHHHHHHHHhh---------------------hccccee--EEE--EECCCCCHHHHHHHHHHHHHHHHH
Confidence 1366666543221 0111110 011 122458999999999998888
Q ss_pred ----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecCh
Q 048718 670 ----MEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPV 739 (1118)
Q Consensus 670 ----~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~ 739 (1118)
.++-+|++|+||+..|+. .++-..+.+.-..|.+..+.+|.+ .+++.+.+ . ++|.|...+.+
T Consensus 241 fr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~--~L~ERag~---~-~~GSiT~~~tv 306 (432)
T PRK06793 241 FRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMK--KLLERSGK---T-QKGSITGIYTV 306 (432)
T ss_pred HHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccch--hHHHHhcc---C-CCcceEEEEEE
Confidence 789999999999999996 555555555544578888888843 23444433 3 45676655543
No 449
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.68 E-value=7.2e-08 Score=100.79 Aligned_cols=77 Identities=25% Similarity=0.276 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCc
Q 048718 653 GISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGG 731 (1118)
Q Consensus 653 gLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG 731 (1118)
..|-||-=---+.+. ..+--|.|||||-++|.|.-+.+++..|+.+++.|.-+||+||.|-...+ =-..++-++++|
T Consensus 129 ~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAi-P~A~I~~~~~~g 205 (233)
T COG3910 129 HMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAI-PGAEIYEISESG 205 (233)
T ss_pred hhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeC-CCcEEEEEecCC
Confidence 368888644334433 45678999999999999999999999999999999999999999853211 123555555555
No 450
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.68 E-value=5.5e-08 Score=116.04 Aligned_cols=150 Identities=23% Similarity=0.303 Sum_probs=94.8
Q ss_pred eeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHHHH
Q 048718 529 LMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENL 608 (1118)
Q Consensus 529 IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL 608 (1118)
++++.+..+..|++++++||||+||||++..|++.+. ...| .++|++|.+|. ...++.|+|
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~--~~~G--------------~~kV~LI~~Dt---~RigA~EQL 305 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV--MRHG--------------ASKVALLTTDS---YRIGGHEQL 305 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH--HhcC--------------CCeEEEEeCCc---cchhHHHHH
Confidence 4566777778899999999999999999999999763 1122 13588999886 357899999
Q ss_pred HHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH-HHHHHHHHhhCC-----CEEEEeCCCC
Q 048718 609 WFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRK-RVNVGLEMVMEP-----SLLILDEPTS 682 (1118)
Q Consensus 609 ~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQ-RVsIArALl~~P-----~lLlLDEPTs 682 (1118)
.+.+.... ++........+..++..+|.+....++.+ ...+++. .+.-..+++.++ .+|+||.++.
T Consensus 306 r~~AeilG---Vpv~~~~~~~Dl~~aL~~L~d~d~VLIDT-----aGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 306 RIYGKILG---VPVHAVKDAADLRLALSELRNKHIVLIDT-----IGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred HHHHHHhC---CCeeccCCchhHHHHHHhccCCCeEEeCC-----CCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 98776532 11111112234455566777665555554 2222322 234455555555 6899999988
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEEc
Q 048718 683 GLDSSSSQLLLRALRREALEGVNICTVVH 711 (1118)
Q Consensus 683 GLD~~sa~~i~~~Lr~la~~G~TIIvvtH 711 (1118)
+ ..+.+.++.....+.+-++.|+
T Consensus 378 ~------~~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 378 G------DTLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred H------HHHHHHHHHhccCCCCEEEEeC
Confidence 7 3344445544444555555555
No 451
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.67 E-value=4e-07 Score=99.09 Aligned_cols=156 Identities=15% Similarity=0.154 Sum_probs=91.8
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHH-cCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHHHHHHHH
Q 048718 534 TGKLSPGRVSAVMGPSGAGKTTFLSALK-GRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSA 612 (1118)
Q Consensus 534 Sl~I~~GEi~aIlGpnGSGKSTLLkiLa-Gl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a 612 (1118)
.+=+++|.++.|.|++|+|||||...++ +... . ...+.|+.-+. +..+.+.-..
T Consensus 19 ~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~---~----------------g~~~~y~~~e~------~~~~~~~~~~ 73 (234)
T PRK06067 19 GGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK---Q----------------GKKVYVITTEN------TSKSYLKQME 73 (234)
T ss_pred CCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh---C----------------CCEEEEEEcCC------CHHHHHHHHH
Confidence 3457899999999999999999999875 2221 0 12344444321 2333222211
Q ss_pred hhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCC---CCHH
Q 048718 613 RCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM--EPSLLILDEPTSG---LDSS 687 (1118)
Q Consensus 613 ~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~--~P~lLlLDEPTsG---LD~~ 687 (1118)
... ... ++.+. .|.....+..+.. ....|.++++.+.+...++. +|+++++||||+. +|..
T Consensus 74 ~~g--~~~---------~~~~~-~g~l~i~~~~~~~--~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~ 139 (234)
T PRK06067 74 SVK--IDI---------SDFFL-WGYLRIFPLNTEG--FEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEED 139 (234)
T ss_pred HCC--CCh---------hHHHh-CCCceEEeccccc--cccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHH
Confidence 111 010 01100 0111111111111 11256788999999999997 9999999999964 4555
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEcCCcHH------HHhccCcEEEEe
Q 048718 688 SSQLLLRALRREALEGVNICTVVHQPSYA------LFRMFDDLILLA 728 (1118)
Q Consensus 688 sa~~i~~~Lr~la~~G~TIIvvtHq~~~~------i~~~~D~vivL~ 728 (1118)
...++++.++.+++.|.|+++++|+.... +..++|.++.|.
T Consensus 140 ~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~ 186 (234)
T PRK06067 140 DILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLR 186 (234)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEE
Confidence 55566666776677799999999986531 234556565553
No 452
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.67 E-value=2.8e-08 Score=129.99 Aligned_cols=76 Identities=18% Similarity=0.260 Sum_probs=66.1
Q ss_pred CCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEE
Q 048718 651 KRGISGGQRKRVNVGLEMV----MEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLIL 726 (1118)
Q Consensus 651 ~rgLSGGERQRVsIArALl----~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~viv 726 (1118)
+..||||||+|++||++++ .+|+++||||||++||+.+...+.+.|+.++. +.++|+|||++.. ...+|+++.
T Consensus 1087 ~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~--~~~~d~~~~ 1163 (1179)
T TIGR02168 1087 LSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGT--MEVADQLYG 1163 (1179)
T ss_pred ccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhH--HHHhhhHee
Confidence 4569999999999999985 67799999999999999999999999998864 4789999999874 467999876
Q ss_pred Eec
Q 048718 727 LAK 729 (1118)
Q Consensus 727 L~~ 729 (1118)
+..
T Consensus 1164 ~~~ 1166 (1179)
T TIGR02168 1164 VTM 1166 (1179)
T ss_pred eee
Confidence 653
No 453
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.61 E-value=3.7e-06 Score=91.35 Aligned_cols=153 Identities=11% Similarity=0.096 Sum_probs=97.1
Q ss_pred hhhHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCcch-hHHHHHHHHHHHHHHHHHHHHHHHhcCc-
Q 048718 940 DKLHYWRESASGMSSLAFFLSKDTVDHFNTLIKPLVYLSMFYFFNNPRSS-VTDNYLVLACLVYCVTGIAYIMAICFEP- 1017 (1118)
Q Consensus 940 Er~vf~RE~~sG~y~~aYflAk~l~dlp~~lv~piif~si~Y~m~g~~~~-~~~~~~v~l~l~~~~~~lg~~lsi~~~~- 1017 (1118)
|+.++.|=..+......|+++|.+..++..++..+++..+.|++.+.... +...++..+++.++..++|..++.....
T Consensus 75 ~~g~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~ 154 (236)
T TIGR01247 75 QFGFLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKPSGVIPTLVLAFIVGVALSGLGVAIAARMDSM 154 (236)
T ss_pred HhCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 34444454555667789999999999999888888888877776553322 2222222333334456777777765543
Q ss_pred hhHHHHH-H-HHH--HHHhhhcCCCcchhhhhccccccHHHHHHHHHHHhcccccCCceeccccccccccccccCCchhh
Q 048718 1018 GPAQLWS-V-LLP--VVLTLIATNNDNNRFVERISDLSYTKWALEAFVVSNAKRYRGIWLITRCGALYSKGYDLNDFFPG 1093 (1118)
Q Consensus 1018 ~~a~l~s-~-l~p--~v~~l~~~~~~iP~~~~Wl~yiS~~rYa~Eal~ine~~~y~g~~~~~~c~~L~~~G~~~~~~~~~ 1093 (1118)
..++... . ..| ++.+.+.+.+.+|.+++|+.+++|.+|+.|++-..- .| +-...+++.+
T Consensus 155 ~~~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~----~~-------------~~~~~~~~~~ 217 (236)
T TIGR01247 155 EGFQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYL----AG-------------VSPTFPLEQD 217 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHH----hC-------------CCcccchHHH
Confidence 2222222 1 122 222345567889999999999999999999965431 11 1112345567
Q ss_pred HHHHHHHHHHHHHHHH
Q 048718 1094 LMRLILAGILSRTIAF 1109 (1118)
Q Consensus 1094 i~iL~~~~v~fRvlay 1109 (1118)
+++|+++++++-+++-
T Consensus 218 ~~~l~~~~~~~~~l~~ 233 (236)
T TIGR01247 218 LLVLTLLAVIFVGIAA 233 (236)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8899999888877764
No 454
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=98.60 E-value=1.1e-06 Score=93.67 Aligned_cols=150 Identities=8% Similarity=0.045 Sum_probs=102.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Q 048718 948 SASGMSSLAFFLSKDTVDHFNTLIKPLVYLSMFYFFNNPRS-SVTDNYLVLACLVYCVTGIAYIMAICFEPGPAQLWSVL 1026 (1118)
Q Consensus 948 ~~sG~y~~aYflAk~l~dlp~~lv~piif~si~Y~m~g~~~-~~~~~~~v~l~l~~~~~~lg~~lsi~~~~~~a~l~s~l 1026 (1118)
..+......++++|.+...+..++..+++..+.||+.|.+. .+...+++.++...+..+++.+++..+.. .++..+.+
T Consensus 53 ~~~p~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~l~~~~~~~lg~~l~~~~~~-~~~~~~~~ 131 (208)
T TIGR03062 53 LPKSARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPAHPPATFGFAILTSLTFMAIIQFLVALFGN-VGRFLALV 131 (208)
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCc-chHHHHHH
Confidence 34455667899999999999999999999988888777553 34333444445555666777777766542 23322222
Q ss_pred HHHHH----hhhcCCCcchhhhhccccccHHHHHHHHHHHhcccccCCceeccccccccccccccCCchhhHHHHHHHHH
Q 048718 1027 LPVVL----TLIATNNDNNRFVERISDLSYTKWALEAFVVSNAKRYRGIWLITRCGALYSKGYDLNDFFPGLMRLILAGI 1102 (1118)
Q Consensus 1027 ~p~v~----~l~~~~~~iP~~~~Wl~yiS~~rYa~Eal~ine~~~y~g~~~~~~c~~L~~~G~~~~~~~~~i~iL~~~~v 1102 (1118)
+.++. +.+.+.+.+|.|++|+.+++|.+|+++++-... +.|. ....+.++++|+++++
T Consensus 132 ~~~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~---~~~~---------------~~~~~~~~~~L~~~~~ 193 (208)
T TIGR03062 132 LLVLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLI---SGGN---------------DGTLWQAVAVLLLILV 193 (208)
T ss_pred HHHHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHH---hCCc---------------HHHHHHHHHHHHHHHH
Confidence 11111 223456889999999999999999999986553 1121 2245678899999999
Q ss_pred HHHHHHHHHHHhhc
Q 048718 1103 LSRTIAFFCMITLQ 1116 (1118)
Q Consensus 1103 ~fRvlayi~L~~~~ 1116 (1118)
++.++++...+..+
T Consensus 194 v~~~la~~~~~~~~ 207 (208)
T TIGR03062 194 VFLALSLLSARRKR 207 (208)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999888776443
No 455
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.58 E-value=1.9e-07 Score=99.61 Aligned_cols=57 Identities=21% Similarity=0.321 Sum_probs=42.8
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEe
Q 048718 663 NVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLA 728 (1118)
Q Consensus 663 sIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~ 728 (1118)
+|+++|..+|+++++||+. |..+...++ +.+..|..++.++|..+.. +..|+++.+.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~~~~--~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTNSAA--KTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCCcHH--HHHhHHHhhc
Confidence 5788999999999999996 665443333 3456799999999998743 5678876664
No 456
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.57 E-value=1.4e-06 Score=83.33 Aligned_cols=118 Identities=30% Similarity=0.377 Sum_probs=76.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSA 618 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~ 618 (1118)
++..+.|+||+|+||||+++.|+...... ..+-+.++........ .....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~-~~~~~~~~~~~~~~~~------------------~~~~~----------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPP-GGGVIYIDGEDILEEV------------------LDQLL----------- 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCC-CCCEEEECCEEccccC------------------HHHHH-----------
Confidence 36789999999999999999999988621 1134444443211100 00000
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH----
Q 048718 619 DLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLR---- 694 (1118)
Q Consensus 619 ~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~---- 694 (1118)
.... . .......+++..+..++++--.+|.++++||+..-.+.........
T Consensus 51 --------------~~~~------~-----~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~ 105 (148)
T smart00382 51 --------------LIIV------G-----GKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEEL 105 (148)
T ss_pred --------------hhhh------h-----ccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhh
Confidence 0000 0 0112367788888888888888899999999999999988877664
Q ss_pred --HHHHHHHCCCEEEEEEc
Q 048718 695 --ALRREALEGVNICTVVH 711 (1118)
Q Consensus 695 --~Lr~la~~G~TIIvvtH 711 (1118)
........+..+|+++|
T Consensus 106 ~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 106 RLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred HHHHHHHhcCCCEEEEEeC
Confidence 12222345778888888
No 457
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.57 E-value=3.2e-07 Score=100.35 Aligned_cols=136 Identities=26% Similarity=0.418 Sum_probs=83.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECC-EecChhhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCC
Q 048718 540 GRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNG-KVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSA 618 (1118)
Q Consensus 540 GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG-~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~ 618 (1118)
|.+..|+||+|+|||||+--|+=-.. .|.=.+++ ... .-...+-|+.=++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va----~G~~~~g~~~~~---~~~~~Vlyi~~Ed---------------------- 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMA----LGKNLFGGGLKV---TEPGRVVYLSAED---------------------- 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHh----cCccccCCcccc---CCCceEEEEECCC----------------------
Confidence 67899999999999999988863221 12111111 100 0123445543221
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH----------------HHhhCCCEEEEeCCCC
Q 048718 619 DLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGL----------------EMVMEPSLLILDEPTS 682 (1118)
Q Consensus 619 ~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIAr----------------ALl~~P~lLlLDEPTs 682 (1118)
+..+...++..+...+++.+..+... +.+|+.|++.+++ ....+|+++++| |++
T Consensus 52 --~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~ 121 (239)
T cd01125 52 --PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLV 121 (239)
T ss_pred --CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChH
Confidence 12223334555556565544333322 2245555554443 335799999999 765
Q ss_pred ------CCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCc
Q 048718 683 ------GLDSSSSQLLLRALRREALE-GVNICTVVHQPS 714 (1118)
Q Consensus 683 ------GLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~ 714 (1118)
.+|+.....+++.|++++++ |.+||+++|...
T Consensus 122 ~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 122 SFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 47999999999999998864 999999999864
No 458
>PRK02224 chromosome segregation protein; Provisional
Probab=98.54 E-value=1.4e-07 Score=121.19 Aligned_cols=78 Identities=33% Similarity=0.420 Sum_probs=67.0
Q ss_pred CCCCCHHHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEEcCCcHHH
Q 048718 651 KRGISGGQRK------RVNVGLEMVME-----P-SLLILDEPTSGLDSSSSQLLLRALRREALEGV-NICTVVHQPSYAL 717 (1118)
Q Consensus 651 ~rgLSGGERQ------RVsIArALl~~-----P-~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~-TIIvvtHq~~~~i 717 (1118)
+..||||||+ |++||++++.+ | +++|+||||++||+.....+.+.|+.+...|. +||++||++...
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~- 857 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELV- 857 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHH-
Confidence 4579999999 99999999864 3 67999999999999999999999999876564 799999998653
Q ss_pred HhccCcEEEEecC
Q 048718 718 FRMFDDLILLAKG 730 (1118)
Q Consensus 718 ~~~~D~vivL~~G 730 (1118)
..+|++++|.++
T Consensus 858 -~~ad~~~~~~~~ 869 (880)
T PRK02224 858 -GAADDLVRVEKD 869 (880)
T ss_pred -HhcCeeEEeecC
Confidence 679999999753
No 459
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.53 E-value=5.3e-08 Score=114.85 Aligned_cols=51 Identities=16% Similarity=0.356 Sum_probs=44.7
Q ss_pred ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcee-EEEECCEecC
Q 048718 527 KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSG-TILVNGKVAS 581 (1118)
Q Consensus 527 k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG-~I~inG~~~~ 581 (1118)
+.+|++||+++++||+++|+|||||||||||+ +|+.. +++| +|.++|.++.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~--~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK--FSEGYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC--CCCCCEEEECCEECC
Confidence 46899999999999999999999999999999 67766 4566 8999998763
No 460
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.51 E-value=1.5e-07 Score=123.52 Aligned_cols=76 Identities=16% Similarity=0.233 Sum_probs=67.1
Q ss_pred CCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEE
Q 048718 651 KRGISGGQRKRVNVGLEMVM----EPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLIL 726 (1118)
Q Consensus 651 ~rgLSGGERQRVsIArALl~----~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~viv 726 (1118)
+..||||||++++||++|+. +|+++|||||+++||+.....+.+.|+.++. +..+|++||++. ++..+|+++.
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~~ 1148 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAIG 1148 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeEe
Confidence 45799999999999999985 7899999999999999999999999988764 468999999975 4589999988
Q ss_pred Eec
Q 048718 727 LAK 729 (1118)
Q Consensus 727 L~~ 729 (1118)
+..
T Consensus 1149 ~~~ 1151 (1164)
T TIGR02169 1149 VTM 1151 (1164)
T ss_pred EEE
Confidence 764
No 461
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.45 E-value=3.4e-07 Score=96.58 Aligned_cols=81 Identities=21% Similarity=0.233 Sum_probs=60.9
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCC--CCCCCCCHHHHHHH
Q 048718 533 VTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDD--IVHGNLTVEENLWF 610 (1118)
Q Consensus 533 VSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~--~l~~~LTV~EnL~f 610 (1118)
+.+.+++|+.++|+||||||||||+++|+|+++ +..|.|.+.+...-....+..++++.|.+ ...+..|+.+.+..
T Consensus 18 l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~--~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (186)
T cd01130 18 LWLAVEARKNILISGGTGSGKTTLLNALLAFIP--PDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRS 95 (186)
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC--CCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHH
Confidence 344567899999999999999999999999997 57899999874321112344566666554 34667899999988
Q ss_pred HHhhc
Q 048718 611 SARCR 615 (1118)
Q Consensus 611 ~a~lr 615 (1118)
+++..
T Consensus 96 ~lR~~ 100 (186)
T cd01130 96 ALRMR 100 (186)
T ss_pred HhccC
Confidence 87654
No 462
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=98.43 E-value=3.6e-05 Score=85.20 Aligned_cols=225 Identities=10% Similarity=0.006 Sum_probs=119.2
Q ss_pred HHHHHHHHhhhhhhh-hHHHHHHHHHHHHHHHHHHhhcccC-ccccchhhHH-HH---HHHHH--HHHhhhhH-HHHHH-
Q 048718 870 YRYFLGRVGKQRLRE-AKIQVVDYLILLLAGICIGTLAKVS-DENFGATGYT-HT---VIAVS--LLCKIAAL-RSFSL- 939 (1118)
Q Consensus 870 ~~~L~~R~~~q~~Rd-~~~~~~~~~~~ll~GlilG~l~~~~-~~~~g~~g~~-~~---vi~~~--~~~~i~al-~~F~~- 939 (1118)
...+.+|.+++.+|+ +......++.-++.-+++|..+... +...| ..|. |. +++++ ..+..... ..+..
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g-~~y~~f~~pg~l~~~~~~~~~~~~~~~~~~~~ 85 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDG-VSYAAFLAAGMVATSAMTASTFETIYATFARM 85 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999 7666655555444444444443211 11111 1121 11 11111 11111111 12333
Q ss_pred -hhhHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhccccC-CcchhHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 048718 940 -DKLHYWRESASGMSSLAFFLSKDTVDHFNTLIKPLVYLSMFYFFNN-PRSSVTDNYLVLACLVYCVTGIAYIMAICFEP 1017 (1118)
Q Consensus 940 -Er~vf~RE~~sG~y~~aYflAk~l~dlp~~lv~piif~si~Y~m~g-~~~~~~~~~~v~l~l~~~~~~lg~~lsi~~~~ 1017 (1118)
|+..+.|=..+-+....++++|.+.+....++..++.+.+.+++.. +...+...+.++++...+..++|.+++.....
T Consensus 86 r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~g~~~~~~~l~~~~~~ll~~l~~~~lg~~~a~~~~~ 165 (253)
T TIGR01291 86 RVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTATLGYIEWWSLIYILPVIALTGLAFASLSMLVAALAPS 165 (253)
T ss_pred HHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445555555666778999999998876655555544444443322 22222112223333444455788888765432
Q ss_pred -hhHHHHH--HHHHHHH--hhhcCCCcchhhhhccccccHHHHHHHHHHHhcccccCCceeccccccccccccccCCchh
Q 048718 1018 -GPAQLWS--VLLPVVL--TLIATNNDNNRFVERISDLSYTKWALEAFVVSNAKRYRGIWLITRCGALYSKGYDLNDFFP 1092 (1118)
Q Consensus 1018 -~~a~l~s--~l~p~v~--~l~~~~~~iP~~~~Wl~yiS~~rYa~Eal~ine~~~y~g~~~~~~c~~L~~~G~~~~~~~~ 1092 (1118)
..++... ++.|+++ +.+.+.+.+|.+++++.++.|..|+.|++-..- . |-+..+++.
T Consensus 166 ~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~----~--------------g~~~~~~~~ 227 (253)
T TIGR01291 166 YAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVM----L--------------GGPGTQVGL 227 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHH----h--------------CCCcHHHHH
Confidence 2222222 2223222 234466789999999999999999999954331 1 111123445
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 048718 1093 GLMRLILAGILSRTIAFFCMI 1113 (1118)
Q Consensus 1093 ~i~iL~~~~v~fRvlayi~L~ 1113 (1118)
.+++++++++++-+++....+
T Consensus 228 ~~~~l~~~~vv~~~la~~~fr 248 (253)
T TIGR01291 228 HLGALCLYAVVPFFISAALLR 248 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 678888888877776655443
No 463
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=98.42 E-value=3.2e-05 Score=84.04 Aligned_cols=213 Identities=11% Similarity=0.035 Sum_probs=115.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhcccCccccchhhHHH-HHH--HHHHHHhhhhHHHHHHh--hhHHHhhcCCCCCHHH
Q 048718 882 LREAKIQVVDYLILLLAGICIGTLAKVSDENFGATGYTH-TVI--AVSLLCKIAALRSFSLD--KLHYWRESASGMSSLA 956 (1118)
Q Consensus 882 ~Rd~~~~~~~~~~~ll~GlilG~l~~~~~~~~g~~g~~~-~vi--~~~~~~~i~al~~F~~E--r~vf~RE~~sG~y~~a 956 (1118)
+|||.....-+.+-+++-++++.++....+ .+...+.. ..+ .....+.+..-.....| ...+.|=+.+.+.+.+
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~er~~G~l~rl~~~P~~~~~ 80 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSVT-HNRGATFIPVLMALAAISTAFTGQAIAVARDRRYGALKRLGATPLPRLG 80 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCccC-CcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHhcCCCcHHH
Confidence 577777766666666655555655543110 11111110 011 11112222222334444 4566677777788899
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccccCCcch--hHHHHHHHHHHHHHHHHHHHHHHHhc----CchhHHHHHHH--HH
Q 048718 957 FFLSKDTVDHFNTLIKPLVYLSMFYFFNNPRSS--VTDNYLVLACLVYCVTGIAYIMAICF----EPGPAQLWSVL--LP 1028 (1118)
Q Consensus 957 YflAk~l~dlp~~lv~piif~si~Y~m~g~~~~--~~~~~~v~l~l~~~~~~lg~~lsi~~----~~~~a~l~s~l--~p 1028 (1118)
|+++|.+..++..++..+++. +++++.|.+.. ....+++.++......+++..++.+. +++.+.....+ +|
T Consensus 81 ~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~p 159 (232)
T TIGR00025 81 ILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGALTALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANLVWFI 159 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 999998877777665544444 45566665432 22222222233333344555554433 11111222211 22
Q ss_pred H--HHhhhcCCCcchhhhhccccccHHHHHHHHHHHhcccccCCceeccccccccccccccCCchhhHHHHHHHHHHHHH
Q 048718 1029 V--VLTLIATNNDNNRFVERISDLSYTKWALEAFVVSNAKRYRGIWLITRCGALYSKGYDLNDFFPGLMRLILAGILSRT 1106 (1118)
Q Consensus 1029 ~--v~~l~~~~~~iP~~~~Wl~yiS~~rYa~Eal~ine~~~y~g~~~~~~c~~L~~~G~~~~~~~~~i~iL~~~~v~fRv 1106 (1118)
+ +.+.+.+.+.+|.|++|+.+++|.+|+.+++-... .| |-+....+.++++++++.+++..
T Consensus 160 ~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~----~~-------------~~~~~~~~~~~~~l~~~~~v~~~ 222 (232)
T TIGR00025 160 FALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAA----TV-------------SVDTFGAVRDLVVVLAFWVALAA 222 (232)
T ss_pred HHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHH----cC-------------CCChhhHHHHHHHHHHHHHHHHH
Confidence 2 12345567899999999999999999999865431 11 22233445677888888888877
Q ss_pred HHHHHHH
Q 048718 1107 IAFFCMI 1113 (1118)
Q Consensus 1107 layi~L~ 1113 (1118)
++...++
T Consensus 223 la~~~~~ 229 (232)
T TIGR00025 223 LAAIRLR 229 (232)
T ss_pred HHHHHHh
Confidence 7766554
No 464
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.40 E-value=1.6e-08 Score=121.53 Aligned_cols=161 Identities=22% Similarity=0.251 Sum_probs=97.0
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHH--HcCCCCCCceeEEEECCEecChhhh---cCeEEEEcCCCCCCCCCCHHHHH
Q 048718 534 TGKLSPGRVSAVMGPSGAGKTTFLSAL--KGRVPGCIMSGTILVNGKVASIQSY---KRIIGFVPQDDIVHGNLTVEENL 608 (1118)
Q Consensus 534 Sl~I~~GEi~aIlGpnGSGKSTLLkiL--aGl~~~~~~sG~I~inG~~~~~~~~---r~~IgyV~Qd~~l~~~LTV~EnL 608 (1118)
.+=+.+|.++.|.|++|||||||..-+ .|.... .+.-+++.... +...+ .+.+|+..++..--..+-+.+
T Consensus 15 ~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~--ge~~lyvs~eE-~~~~l~~~~~~~G~~~~~~~~~g~l~~~~-- 89 (484)
T TIGR02655 15 HGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHF--DEPGVFVTFEE-SPQDIIKNARSFGWDLQKLVDEGKLFILD-- 89 (484)
T ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEEEEec-CHHHHHHHHHHcCCCHHHHhhcCceEEEe--
Confidence 445789999999999999999999876 454431 13344444432 11111 233455444221000000000
Q ss_pred HHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH--HHHhhCCCEEEEeCCCCCCCH
Q 048718 609 WFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVG--LEMVMEPSLLILDEPTSGLDS 686 (1118)
Q Consensus 609 ~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIA--rALl~~P~lLlLDEPTsGLD~ 686 (1118)
. .+.. ....+++.+++.+..+..... +|+|++|||.|+ .+|...|+.+ .
T Consensus 90 ---------~-~~~~----~~~~~~~~~~l~~~l~~i~~~-----ls~g~~qRVvIDSl~aL~~~~~~~----------~ 140 (484)
T TIGR02655 90 ---------A-SPDP----EGQDVVGGFDLSALIERINYA-----IRKYKAKRVSIDSVTAVFQQYDAV----------S 140 (484)
T ss_pred ---------c-Cchh----ccccccccCCHHHHHHHHHHH-----HHHhCCcEEEEeehhHhhhhcCch----------H
Confidence 0 0000 011233445555555555544 999999999999 6666665443 4
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEcCCcHH--------HHhccCcEEEEe
Q 048718 687 SSSQLLLRALRREALEGVNICTVVHQPSYA--------LFRMFDDLILLA 728 (1118)
Q Consensus 687 ~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~--------i~~~~D~vivL~ 728 (1118)
..+..+.+.++.+++.|.|+|+++|+.+.. ...++|.|+.|.
T Consensus 141 ~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 141 VVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 677888888988888899999999987531 134678888885
No 465
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.37 E-value=3.8e-06 Score=107.63 Aligned_cols=53 Identities=17% Similarity=0.108 Sum_probs=48.5
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHH
Q 048718 664 VGLEMVMEPSLLILDEPTSGL-DSSSSQLLLRALRREALEGVNICTVVHQPSYA 716 (1118)
Q Consensus 664 IArALl~~P~lLlLDEPTsGL-D~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~ 716 (1118)
|++++..+|.++++|||+.+| |+..+..+.+.++.+++.|.+++++||+++..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~ 733 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDA 733 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 677888999999999999999 79999999999999988899999999998764
No 466
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.36 E-value=3.4e-07 Score=96.96 Aligned_cols=113 Identities=20% Similarity=0.189 Sum_probs=66.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLP 621 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~ 621 (1118)
+++|.||||||||||.+.|++++. .| .+.++.+|+.+. .++..+......... ..+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~----~~----------------~~~v~~~D~~~~-~~~~~~~~~~~~~~~---~~~ 56 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG----NP----------------KVVIISQDSYYK-DLSHEELEERKNNNY---DHP 56 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC----CC----------------CeEEEEeccccc-ccccccHHHhccCCC---CCC
Confidence 589999999999999999999863 12 234444444332 223333222111100 111
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048718 622 KAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDS 686 (1118)
Q Consensus 622 ~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~ 686 (1118)
.........+.+..+......+.++-+ .|.|++++..+ .+.+++++|+|.|..+.++
T Consensus 57 ~~~~~~~~~~~l~~l~~~~~~~~p~~d-----~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 57 DAFDFDLLISHLQDLKNGKSVEIPVYD-----FKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred CcccHHHHHHHHHHHHCCCCEeccccc-----cccCcccCCce---ecCCCCEEEEechhhccch
Confidence 111112334556666554444444433 78888776555 5788999999999999886
No 467
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.29 E-value=3.1e-07 Score=99.40 Aligned_cols=41 Identities=32% Similarity=0.399 Sum_probs=30.5
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHH--cCCCCCCceeEEEECC
Q 048718 534 TGKLSPGRVSAVMGPSGAGKTTFLSALK--GRVPGCIMSGTILVNG 577 (1118)
Q Consensus 534 Sl~I~~GEi~aIlGpnGSGKSTLLkiLa--Gl~~~~~~sG~I~inG 577 (1118)
.+=+++|++++|.|++|+|||||...++ ++.+ .++.+++..
T Consensus 14 ~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~---g~~~~~is~ 56 (229)
T TIGR03881 14 EGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD---GDPVIYVTT 56 (229)
T ss_pred cCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEEc
Confidence 3557899999999999999999988655 4333 234556654
No 468
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.28 E-value=1.3e-06 Score=103.25 Aligned_cols=87 Identities=17% Similarity=0.206 Sum_probs=67.7
Q ss_pred ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-ceeEEEECCEecCh---h------hhcCeEEEEcCCC
Q 048718 527 KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCI-MSGTILVNGKVASI---Q------SYKRIIGFVPQDD 596 (1118)
Q Consensus 527 k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~-~sG~I~inG~~~~~---~------~~r~~IgyV~Qd~ 596 (1118)
..+|+++ +.|.+||.++|+|+||+|||||+++|+|+.++.. .-|.|-.+|.++.. . ..|..+++++|+.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 5799999 9999999999999999999999999999986311 12445445543321 1 1245799999999
Q ss_pred CCCCCCCHHHHHHHHHhh
Q 048718 597 IVHGNLTVEENLWFSARC 614 (1118)
Q Consensus 597 ~l~~~LTV~EnL~f~a~l 614 (1118)
..+..+++.+++.+.+..
T Consensus 222 s~~~rl~a~e~a~~iAEy 239 (434)
T PRK07196 222 SPLMRIKATELCHAIATY 239 (434)
T ss_pred ChhhhHHHHHHHHHHHHH
Confidence 999999999999877654
No 469
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.27 E-value=1.2e-06 Score=101.98 Aligned_cols=60 Identities=27% Similarity=0.346 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcH
Q 048718 653 GISGGQRKRVNVGLEMVM---------EPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSY 715 (1118)
Q Consensus 653 gLSGGERQRVsIArALl~---------~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~ 715 (1118)
-+|.||+|++.||..|+. +|+||+||||+++||+..+..+++.|+.. |..+++++|++..
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~~ 343 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLDH 343 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChhh
Confidence 489999999999999999 99999999999999999999999988653 6799999998753
No 470
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.26 E-value=5.9e-06 Score=95.50 Aligned_cols=56 Identities=20% Similarity=0.313 Sum_probs=42.5
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEE
Q 048718 663 NVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILL 727 (1118)
Q Consensus 663 sIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL 727 (1118)
+|+++|-.+|+++++||+. |+.+....++ .+..|.+++.++|..+.. ...+|++-|
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~~~--~~~~Rl~~~ 242 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNSAA--QTIERIIDV 242 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCCHH--HHHHHHHHh
Confidence 4677888999999999997 8887765444 345799999999987643 556776554
No 471
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.22 E-value=3.6e-06 Score=108.70 Aligned_cols=80 Identities=29% Similarity=0.349 Sum_probs=69.1
Q ss_pred cCCCCCHHHHHHHHHHHHHh------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhcc
Q 048718 650 EKRGISGGQRKRVNVGLEMV------ME--PSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMF 721 (1118)
Q Consensus 650 ~~rgLSGGERQRVsIArALl------~~--P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~ 721 (1118)
.+..|||||+=.++||.+|+ .+ -++|||||||..||+.+...++++|..+...+.+|+||||+.. +.+.+
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~ee--l~e~~ 889 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEE--LKERA 889 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHH--HHHhC
Confidence 34569999999888877765 35 6999999999999999999999999999888999999999965 45799
Q ss_pred CcEEEEecCc
Q 048718 722 DDLILLAKGG 731 (1118)
Q Consensus 722 D~vivL~~GG 731 (1118)
|.++.+.+.|
T Consensus 890 ~~~i~V~k~~ 899 (908)
T COG0419 890 DVRIRVKKDG 899 (908)
T ss_pred CeEEEEEecC
Confidence 9999987644
No 472
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.21 E-value=3.6e-06 Score=99.73 Aligned_cols=84 Identities=19% Similarity=0.264 Sum_probs=66.8
Q ss_pred ceEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECC---EecCh----
Q 048718 510 TIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNG---KVASI---- 582 (1118)
Q Consensus 510 ~~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG---~~~~~---- 582 (1118)
...++.++++..|.. +..+++.++ .|.+||.++|+||||+||||||++|+++.+ ++.|.|.+.| +++..
T Consensus 137 p~~~~r~~v~~~l~T-Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~--pd~gvv~liGergrev~e~~~~ 212 (450)
T PRK06002 137 PPAMTRARVETGLRT-GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA--FDTVVIALVGERGREVREFLED 212 (450)
T ss_pred CCCeEeecceEEcCC-CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCeeeeeecccCCccHHHHhHH
Confidence 345788889988863 367899996 899999999999999999999999999987 5789998865 43321
Q ss_pred ---hhhcCeEEEEcCCCC
Q 048718 583 ---QSYKRIIGFVPQDDI 597 (1118)
Q Consensus 583 ---~~~r~~IgyV~Qd~~ 597 (1118)
...++.|+||+|.+.
T Consensus 213 ~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 213 TLADNLKKAVAVVATSDE 230 (450)
T ss_pred HHHHhhCCeEEEEEcCCC
Confidence 113467999999864
No 473
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.14 E-value=2.3e-05 Score=93.36 Aligned_cols=173 Identities=20% Similarity=0.227 Sum_probs=104.5
Q ss_pred ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-----------hhhcCeEEEEcCC
Q 048718 527 KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-----------QSYKRIIGFVPQD 595 (1118)
Q Consensus 527 k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-----------~~~r~~IgyV~Qd 595 (1118)
..+++++ +.+.+||.++|+|+||+|||||+++|+|..+ ++.|.+...|..... ..+++.+.++.+.
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~--~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~ 227 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE--ADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATS 227 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECC
Confidence 5789999 9999999999999999999999999999987 567777666643211 1123334444443
Q ss_pred CCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCccCCCCC-HHHHHHHHHHHHHhhCC
Q 048718 596 DIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH--IRDSLVGTVEKRGIS-GGQRKRVNVGLEMVMEP 672 (1118)
Q Consensus 596 ~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~--~~dt~vg~~~~rgLS-GGERQRVsIArALl~~P 672 (1118)
+. ++.+-..-+ .. .. .+.+.+...|-.- ..|. |+ --|-+| .|+
T Consensus 228 d~-----~p~~r~~~~-~~----------a~-t~AE~frd~G~~Vll~~Ds---------lTr~A~A~R-Eis------- 273 (440)
T TIGR01026 228 DQ-----SPLLRLKGA-YV----------AT-AIAEYFRDQGKDVLLLMDS---------VTRFAMAQR-EIG------- 273 (440)
T ss_pred CC-----CHHHHHHHH-HH----------HH-HHHHHHHHCCCCEEEEEeC---------hHHHHHHHH-HHH-------
Confidence 32 121111100 00 00 1112222223210 1111 11 011122 111
Q ss_pred CEEEEeCC--CCCCCHHHHHHHHHHHHHHHHCCC-------EEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 673 SLLILDEP--TSGLDSSSSQLLLRALRREALEGV-------NICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 673 ~lLlLDEP--TsGLD~~sa~~i~~~Lr~la~~G~-------TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
+.+.|| +.|+|+.....+.+++.+....+. ||++..||..+ ..+|.+..+.+ |+++..+...+.
T Consensus 274 --l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~d---pi~d~~~~i~d-G~ivLsr~la~~ 346 (440)
T TIGR01026 274 --LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNE---PIADSVRGILD-GHIVLSRALAQR 346 (440)
T ss_pred --HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCCc---chhhhhccccc-eEEEEecchhhC
Confidence 223564 569999999999999988776566 78888898754 36788888876 699988776543
No 474
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.07 E-value=2.4e-06 Score=89.71 Aligned_cols=67 Identities=19% Similarity=0.191 Sum_probs=46.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChh-hhc-CeEEEEcCCCCCCCCCCHHHHHHHH
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQ-SYK-RIIGFVPQDDIVHGNLTVEENLWFS 611 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~-~~r-~~IgyV~Qd~~l~~~LTV~EnL~f~ 611 (1118)
+||+++|+|+||||||||+++|+|++.+ +.++|.++... ..+ ...|+.+|+...++.+++.+++.+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYS 70 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence 6999999999999999999999998862 57788664321 111 2356667765555555666555543
No 475
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.07 E-value=9.2e-06 Score=107.43 Aligned_cols=44 Identities=25% Similarity=0.384 Sum_probs=36.0
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECC
Q 048718 533 VTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNG 577 (1118)
Q Consensus 533 VSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG 577 (1118)
+++..+.+++++|+|++|+|||||++.+.+.... ...|.+++++
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~-~F~g~vfv~~ 243 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR-QFQSSVFIDR 243 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhh-cCCeEEEeec
Confidence 3455678899999999999999999999877642 3578898876
No 476
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.06 E-value=6.8e-05 Score=83.19 Aligned_cols=38 Identities=26% Similarity=0.376 Sum_probs=32.7
Q ss_pred ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 527 KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 527 k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-+.|+++.+-+.+|+++.|.|++|+|||||+..++-..
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35688888889999999999999999999999887543
No 477
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.06 E-value=8.7e-06 Score=104.22 Aligned_cols=138 Identities=22% Similarity=0.247 Sum_probs=82.3
Q ss_pred ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHH
Q 048718 527 KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEE 606 (1118)
Q Consensus 527 k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~E 606 (1118)
..|-+|+++. ..+.++.|.|||++||||+||.++-..-- ..-| .|||=+..- +.+.+
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~il-Aq~G------------------~~VPa~~a~---i~~~d 651 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLL-AQIG------------------SFVPAESAR---IGIVD 651 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHH-HhcC------------------CceeccceE---ecccC
Confidence 3466777777 66789999999999999999998754210 0011 223322111 11111
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCC---C
Q 048718 607 NLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMV--MEPSLLILDEP---T 681 (1118)
Q Consensus 607 nL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl--~~P~lLlLDEP---T 681 (1118)
. ++.++|-. |.. ..|+|-=+.....++..|- ++++++|+||| |
T Consensus 652 ~------------------------I~triga~---d~i-----~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGT 699 (854)
T PRK05399 652 R------------------------IFTRIGAS---DDL-----ASGRSTFMVEMTETANILNNATERSLVLLDEIGRGT 699 (854)
T ss_pred e------------------------eeeccCcc---ccc-----ccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCC
Confidence 1 11111111 111 1346666666666666655 49999999999 8
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCc
Q 048718 682 SGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDD 723 (1118)
Q Consensus 682 sGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~ 723 (1118)
+.+|..+ ....+++.+.+. |.+++++||..+ +.+++++
T Consensus 700 s~~dg~a--ia~aile~l~~~~~~~~l~aTH~~e--l~~l~~~ 738 (854)
T PRK05399 700 STYDGLS--IAWAVAEYLHDKIGAKTLFATHYHE--LTELEEK 738 (854)
T ss_pred CcchhHH--HHHHHHHHHHhcCCceEEEEechHH--HHHHhhh
Confidence 8888444 344456666655 588999999954 4456554
No 478
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=98.04 E-value=0.0011 Score=73.22 Aligned_cols=194 Identities=10% Similarity=0.098 Sum_probs=103.6
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhccc----Cc-cccc-hhhHH-HHH---HHHH-HHHhh-hhH
Q 048718 867 FVQYRYFLGRVGKQRLREAKIQVVDYLILLLAGICIGTLAKV----SD-ENFG-ATGYT-HTV---IAVS-LLCKI-AAL 934 (1118)
Q Consensus 867 ~~Q~~~L~~R~~~q~~Rd~~~~~~~~~~~ll~GlilG~l~~~----~~-~~~g-~~g~~-~~v---i~~~-~~~~i-~al 934 (1118)
+++++.+++|.++...|++......++.-++.-+++|..+.. .. ...+ ..+|. |.+ +.+. +...+ .++
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~~~ 80 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQSSL 80 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 468899999999999999988877776666666666554421 10 0011 11121 111 1111 11111 111
Q ss_pred H-HHHHhhhHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCcch---hHHHHHHHHHHHHHHHHHHHH
Q 048718 935 R-SFSLDKLHYWRESASGMSSLAFFLSKDTVDHFNTLIKPLVYLSMFYFFNNPRSS---VTDNYLVLACLVYCVTGIAYI 1010 (1118)
Q Consensus 935 ~-~F~~Er~vf~RE~~sG~y~~aYflAk~l~dlp~~lv~piif~si~Y~m~g~~~~---~~~~~~v~l~l~~~~~~lg~~ 1010 (1118)
. ....|+..+.|=+.....+..+.++|.+......++.-+++..+.+++ |.... +.....++++..++..++|.+
T Consensus 81 ~~~~~r~~g~~~~l~~~p~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~-g~~~~~~~~l~~~~~~~l~~~~~~~lgl~ 159 (253)
T TIGR03861 81 SMVYDREMGSMRVLLTSPLPRPFLLFCKLLASALISLLQVYAFLAIAALV-GVQPPVWGYVSVLPALVLVAFMLGALGLA 159 (253)
T ss_pred HhHHhHhcCHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 112233355555556667778999999998876655544444443333 32211 211222333344556678888
Q ss_pred HHHhcCc-hhHHHHH-H-HHHHHH--hhhcCC---CcchhhhhccccccHHHHHHHHHH
Q 048718 1011 MAICFEP-GPAQLWS-V-LLPVVL--TLIATN---NDNNRFVERISDLSYTKWALEAFV 1061 (1118)
Q Consensus 1011 lsi~~~~-~~a~l~s-~-l~p~v~--~l~~~~---~~iP~~~~Wl~yiS~~rYa~Eal~ 1061 (1118)
++..... ..++... . +.|+++ +.+-.. ++.|.|++|+.++.|..|..|++-
T Consensus 160 la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R 218 (253)
T TIGR03861 160 LSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVR 218 (253)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHH
Confidence 8776432 2333222 1 122211 122222 335889999999999999999864
No 479
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.02 E-value=9.3e-05 Score=94.61 Aligned_cols=50 Identities=16% Similarity=0.092 Sum_probs=44.5
Q ss_pred HHhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHCCCEEEEEEcCCcHH
Q 048718 667 EMVMEPSLLILDEPTSGLD-SSSSQLLLRALRREALEGVNICTVVHQPSYA 716 (1118)
Q Consensus 667 ALl~~P~lLlLDEPTsGLD-~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~ 716 (1118)
.+..+|.++++|||...|| +..+..+.+.++.+++.|..++++||+++..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~ 688 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDA 688 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 4567899999999999999 8889999999999988888999999998653
No 480
>PRK14079 recF recombination protein F; Provisional
Probab=98.01 E-value=1e-05 Score=93.77 Aligned_cols=73 Identities=22% Similarity=0.239 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCc
Q 048718 653 GISGGQRKRVNVGLEMV---------MEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDD 723 (1118)
Q Consensus 653 gLSGGERQRVsIArALl---------~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~ 723 (1118)
-+|+||+|++.||..|+ .+|++++||||+++||...+..+++.|... ..++|.+++.+ ..+|+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~~~-----~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTEAP-----PGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCCCC-----CCCce
Confidence 38999999999999999 899999999999999999999998888543 23344434322 46899
Q ss_pred EEEEecCcEEE
Q 048718 724 LILLAKGGVIV 734 (1118)
Q Consensus 724 vivL~~GG~iv 734 (1118)
++.|.+ |++.
T Consensus 335 ~~~~~~-~~~~ 344 (349)
T PRK14079 335 TLRIEA-GVFT 344 (349)
T ss_pred EEEEec-cEec
Confidence 999976 5553
No 481
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.99 E-value=9e-06 Score=108.61 Aligned_cols=58 Identities=24% Similarity=0.377 Sum_probs=51.5
Q ss_pred CCCCHHHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcC
Q 048718 652 RGISGGQRKRVN----VGLE--------MVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQ 712 (1118)
Q Consensus 652 rgLSGGERQRVs----IArA--------Ll~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq 712 (1118)
.+||||||||++ +|++ +..+|++++|||||+|||+.+...++++|..+ |.++||++|.
T Consensus 1246 ~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~ 1315 (1353)
T TIGR02680 1246 GPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSER 1315 (1353)
T ss_pred cCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccc
Confidence 579999999996 5645 55899999999999999999999999999877 7889999887
No 482
>PRK15066 inner membrane transport permease; Provisional
Probab=97.96 E-value=0.0015 Score=72.33 Aligned_cols=231 Identities=14% Similarity=0.059 Sum_probs=115.8
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHH-HHHHHHHHHHHHhhcccCc-cccchhhHHHH---HHHHHHH--HhhhhHHHHHH
Q 048718 867 FVQYRYFLGRVGKQRLREAKIQVVD-YLILLLAGICIGTLAKVSD-ENFGATGYTHT---VIAVSLL--CKIAALRSFSL 939 (1118)
Q Consensus 867 ~~Q~~~L~~R~~~q~~Rd~~~~~~~-~~~~ll~GlilG~l~~~~~-~~~g~~g~~~~---vi~~~~~--~~i~al~~F~~ 939 (1118)
++-++.+.+|..+...|++...... ++..++..+++|.+++... +.-+.....|. ++.+.++ +...+...+..
T Consensus 7 ~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~~~~~~~~i~~ 86 (257)
T PRK15066 7 WIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNSYSNVASSFFS 86 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788999999888887543333 3444555666665543211 10011111111 1111111 11222233444
Q ss_pred hh--hHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCcch-hHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 048718 940 DK--LHYWRESASGMSSLAFFLSKDTVDHFNTLIKPLVYLSMFYFFNNPRSS-VTDNYLVLACLVYCVTGIAYIMAICF- 1015 (1118)
Q Consensus 940 Er--~vf~RE~~sG~y~~aYflAk~l~dlp~~lv~piif~si~Y~m~g~~~~-~~~~~~v~l~l~~~~~~lg~~lsi~~- 1015 (1118)
++ ....|=..+-+.+..+.+++.+......++..++...+.+.+.+.... ....+..+++...+....|..++...
T Consensus 87 ~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~~~~~~l~~~ll~~~~f~~~gl~~a~~~~ 166 (257)
T PRK15066 87 AKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVHHWGIVLLTVLLTAILFSLGGLINAVFAK 166 (257)
T ss_pred HHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44 122222344566678888888876655444434333333333243322 11111122222222223355555433
Q ss_pred CchhHHHHH--HHHHHHH--hhhcCCCcchhhhhccccccHHHHHHHHHHHhcccccCCceeccccccccccccccCCch
Q 048718 1016 EPGPAQLWS--VLLPVVL--TLIATNNDNNRFVERISDLSYTKWALEAFVVSNAKRYRGIWLITRCGALYSKGYDLNDFF 1091 (1118)
Q Consensus 1016 ~~~~a~l~s--~l~p~v~--~l~~~~~~iP~~~~Wl~yiS~~rYa~Eal~ine~~~y~g~~~~~~c~~L~~~G~~~~~~~ 1091 (1118)
....++... ++.|+++ +.+.+.+.+|.+++|+.++.|+.|..|++=..- - |.+....+
T Consensus 167 ~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~----~--------------g~~~~~~~ 228 (257)
T PRK15066 167 SFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGF----L--------------GISDVPLW 228 (257)
T ss_pred cHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHH----c--------------CCCCccHH
Confidence 222333222 2222222 223455778999999999999999999864321 0 11112345
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Q 048718 1092 PGLMRLILAGILSRTIAFFCMITL 1115 (1118)
Q Consensus 1092 ~~i~iL~~~~v~fRvlayi~L~~~ 1115 (1118)
.++++++++++++-+++....+..
T Consensus 229 ~~l~~l~~~~~v~~~la~~~~~r~ 252 (257)
T PRK15066 229 LAFAVLLVFIVVLYLLAWYLLERG 252 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 678888899888888877766543
No 483
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=97.85 E-value=0.00023 Score=91.24 Aligned_cols=48 Identities=25% Similarity=0.182 Sum_probs=42.7
Q ss_pred HhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHCCCEEEEEEcCCcH
Q 048718 668 MVMEPSLLILDEPTSGLD-SSSSQLLLRALRREALEGVNICTVVHQPSY 715 (1118)
Q Consensus 668 Ll~~P~lLlLDEPTsGLD-~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~ 715 (1118)
+-.+|.++++|||+.+|| +..+..+.+.++.+++.|.+++++||+++.
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 680 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLAD 680 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence 345899999999999999 788899999999988889999999999864
No 484
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.81 E-value=0.00022 Score=74.56 Aligned_cols=65 Identities=17% Similarity=0.157 Sum_probs=43.8
Q ss_pred HHHHHHHcCCC-ccccccccCccCCCCCHHHHHHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Q 048718 629 VERVIESLGLQ-HIRDSLVGTVEKRGISGGQRKRVN--VGLEMVM-EPSLLILDEPTSGLDSSSSQLLLRALRREALE 702 (1118)
Q Consensus 629 v~~lL~~lgL~-~~~dt~vg~~~~rgLSGGERQRVs--IArALl~-~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~ 702 (1118)
+.+.++.+++. -..-+++. .+|+||+|++. +++.+-. ++++ .|||++|.....++.+.|.++.++
T Consensus 127 i~~~l~~~~~~~iiv~nK~D-----l~~~~~~~~~~~~i~~~l~~~~~~~----~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 127 MIEWLKEYGIPVLIVLTKAD-----KLKKGERKKQLKKVRKALKFGDDEV----ILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHcCCcEEEEEECcc-----cCCHHHHHHHHHHHHHHHHhcCCce----EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 44555655553 22233333 38999999987 5555543 3443 399999999999999999887654
No 485
>PRK01889 GTPase RsgA; Reviewed
Probab=97.78 E-value=2.9e-05 Score=90.37 Aligned_cols=77 Identities=22% Similarity=0.330 Sum_probs=58.0
Q ss_pred eeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHHHHH
Q 048718 530 MRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLW 609 (1118)
Q Consensus 530 L~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~ 609 (1118)
++.+.-.+++|++++|+|+||+|||||+++|+|... +..|+|.+++........++.+++++|+..++.+ ....++.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~--~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~~ 261 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV--QKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMRELQ 261 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc--cceeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhhc
Confidence 444445567899999999999999999999999987 5899999987432222345679999998877754 3444443
No 486
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.76 E-value=0.00016 Score=70.13 Aligned_cols=55 Identities=25% Similarity=0.299 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----CCCEEEEEEcCCc
Q 048718 659 RKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREAL-----EGVNICTVVHQPS 714 (1118)
Q Consensus 659 RQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~-----~G~TIIvvtHq~~ 714 (1118)
++..........++.++++||.-.. ++.....+.+.+..... .+..+|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 3445555666778999999998765 55666777777776642 4678888888644
No 487
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.76 E-value=1e-05 Score=86.63 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=26.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 538 SPGRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 538 ~~GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
++|++++|+||||||||||++.|+++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999999999875
No 488
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.76 E-value=3.9e-05 Score=76.59 Aligned_cols=43 Identities=9% Similarity=0.146 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHHH-----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 048718 653 GISGGQRKRVNVGLEM-----VMEPSLLILDEPTSGLDSSSSQLLLRALRRE 699 (1118)
Q Consensus 653 gLSGGERQRVsIArAL-----l~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~l 699 (1118)
.++++++++....... ...++++ |+|++|.....++++.|.++
T Consensus 122 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 122 KLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred cCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 3788988887666553 2345555 99999999999999888754
No 489
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.72 E-value=9e-05 Score=91.97 Aligned_cols=112 Identities=21% Similarity=0.237 Sum_probs=70.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCC------CceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHHHHHHHH
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRVPGC------IMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSA 612 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~~~~------~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a 612 (1118)
..+.++|+||||+|||||+++|.+..... ...+-|.++|...... .+ ...+-.|+.
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d-~~-----------------~i~~~llg~ 235 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWD-PR-----------------EVTNPLLGS 235 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCC-HH-----------------HHhHHhcCC
Confidence 34579999999999999999999876410 1123455555432100 00 001111110
Q ss_pred hhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 048718 613 RCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLL 692 (1118)
Q Consensus 613 ~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i 692 (1118)
... .......+.++.+|+.+..+..+.. +||| +||||| +..||+..+..+
T Consensus 236 -------~~~-~~~~~a~~~l~~~gl~~~~~g~v~~-----asgG----------------vL~LDE-i~~Ld~~~Q~~L 285 (615)
T TIGR02903 236 -------VHD-PIYQGARRDLAETGVPEPKTGLVTD-----AHGG----------------VLFIDE-IGELDPLLQNKL 285 (615)
T ss_pred -------ccH-HHHHHHHHHHHHcCCCchhcCchhh-----cCCC----------------eEEEec-cccCCHHHHHHH
Confidence 111 1112344567788888777666654 8888 999999 899999999998
Q ss_pred HHHHHH
Q 048718 693 LRALRR 698 (1118)
Q Consensus 693 ~~~Lr~ 698 (1118)
++.|++
T Consensus 286 l~~Le~ 291 (615)
T TIGR02903 286 LKVLED 291 (615)
T ss_pred HHHHhh
Confidence 888864
No 490
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.71 E-value=6.9e-05 Score=87.71 Aligned_cols=54 Identities=20% Similarity=0.370 Sum_probs=48.4
Q ss_pred eEEEEEeEEEEEcCCcceeee-----------eeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 511 IEVAFKDLTITLKGKNKHLMR-----------SVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~-----------nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
..+.|+||++.|+. ++.+|+ |+.+.|.+|+.++|+||+|+|||||++.|+..+.
T Consensus 129 ~ri~Fe~LTf~YP~-er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 129 NRVLFENLTPLYPN-ERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCeEEEEeeecCCC-ccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 35899999999974 457897 9999999999999999999999999999998764
No 491
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.70 E-value=3.8e-05 Score=81.03 Aligned_cols=71 Identities=15% Similarity=0.094 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcH-HHHhccCcEEEEec
Q 048718 657 GQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSY-ALFRMFDDLILLAK 729 (1118)
Q Consensus 657 GERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~-~i~~~~D~vivL~~ 729 (1118)
|+-+|..||..+..+|+.+.++| +.|||....++.+.+++....|.+|++.+|.+.. .+...+|.++++..
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~ 132 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDV 132 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEEC
Confidence 77899999999999999998887 7899999999999998876557799999998743 24467888877753
No 492
>PRK06315 type III secretion system ATPase; Provisional
Probab=97.69 E-value=7.9e-05 Score=88.56 Aligned_cols=110 Identities=13% Similarity=0.145 Sum_probs=69.7
Q ss_pred ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECC---EecC---hhhh---cCeEEEE-----
Q 048718 527 KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNG---KVAS---IQSY---KRIIGFV----- 592 (1118)
Q Consensus 527 k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG---~~~~---~~~~---r~~IgyV----- 592 (1118)
..+++++ +.+.+||.++|+|+||+|||||+++|+|+.+. ...|.|.+.| +++. ...+ ..+.+++
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~-~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats 229 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEE-ADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTS 229 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhccccc-CCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCC
Confidence 4689998 99999999999999999999999999998842 2457777755 3321 1111 1234445
Q ss_pred cCCCCC--CCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC
Q 048718 593 PQDDIV--HGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ 639 (1118)
Q Consensus 593 ~Qd~~l--~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~ 639 (1118)
+|++.. .+.+ |...+.-..+.+........+...++.++++.++|.
T Consensus 230 ~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 230 DQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 888642 2333 444444333322111112344556788888888884
No 493
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.66 E-value=4.6e-05 Score=80.32 Aligned_cols=36 Identities=39% Similarity=0.683 Sum_probs=29.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEec
Q 048718 540 GRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVA 580 (1118)
Q Consensus 540 GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~ 580 (1118)
|++++|+||||||||||+++|++... + .+.+++..+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~--~---~~~~~~~~~ 37 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ--T---QLLVAHRYI 37 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC--C---eEEEcCEEC
Confidence 78999999999999999999999875 2 466666543
No 494
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=97.66 E-value=0.0019 Score=70.21 Aligned_cols=161 Identities=16% Similarity=0.115 Sum_probs=93.4
Q ss_pred hhhHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhccccC--CcchhHHHHHHHHHHHHHHHHHHHHHH-HhcC
Q 048718 940 DKLHYWRESASGMSSLAFFLSKDTVDHFNTLIKPLVYLSMFYFFNN--PRSSVTDNYLVLACLVYCVTGIAYIMA-ICFE 1016 (1118)
Q Consensus 940 Er~vf~RE~~sG~y~~aYflAk~l~dlp~~lv~piif~si~Y~m~g--~~~~~~~~~~v~l~l~~~~~~lg~~ls-i~~~ 1016 (1118)
+...+.|=..+..++..+++++.+.......+.-.+...++.++.| +...+.....+.++......++|.+++ +...
T Consensus 116 ~~g~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 195 (286)
T COG0842 116 EFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLGSLLLLLLLLLLLLLATVALGLLLSTFAKS 195 (286)
T ss_pred hhCcHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444445455666656677777766665543333333333333333 444443334444445555556666444 1222
Q ss_pred -chhHHHHHHHHHH----HHhhhcCCCcchhhhhccccccHHHHHHHHHHHhcccccCCceeccccccccccccccCCch
Q 048718 1017 -PGPAQLWSVLLPV----VLTLIATNNDNNRFVERISDLSYTKWALEAFVVSNAKRYRGIWLITRCGALYSKGYDLNDFF 1091 (1118)
Q Consensus 1017 -~~~a~l~s~l~p~----v~~l~~~~~~iP~~~~Wl~yiS~~rYa~Eal~ine~~~y~g~~~~~~c~~L~~~G~~~~~~~ 1091 (1118)
...++..+.++.+ +.+.+.+.+.+|.+++|+.++.|.+|+.+++-... .+ |-.....+
T Consensus 196 ~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~----~~-------------~~~~~~~~ 258 (286)
T COG0842 196 QLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVY----LG-------------GWRNDGIW 258 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHH----hC-------------CCchhhHH
Confidence 1122222222222 22334567888999999999999999999977552 11 11111256
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcc
Q 048718 1092 PGLMRLILAGILSRTIAFFCMITLQK 1117 (1118)
Q Consensus 1092 ~~i~iL~~~~v~fRvlayi~L~~~~k 1117 (1118)
..+++|+++++++-+++.+.++...+
T Consensus 259 ~~~~~l~~~~~v~~~~~~~~~~~~~~ 284 (286)
T COG0842 259 ISLLILLLFAVVFLLLGLLLLRRRRK 284 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 78899999999999999998887654
No 495
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.66 E-value=5.3e-05 Score=82.60 Aligned_cols=72 Identities=18% Similarity=0.244 Sum_probs=48.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeE----EEECCEecChhhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhh
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGT----ILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARC 614 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~----I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~l 614 (1118)
+..+++|.||||||||||++.|+++++ +..|. |.+++.... ...+...|++++.+ .+..+++.+.+.+...+
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~--~~~g~~~v~i~~D~~~~~-~~~~~~~g~~~~~~-~~~~~d~~~~~~~l~~l 107 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQ--QDGELPAIQVPMDGFHLD-NAVLDAHGLRPRKG-APETFDVAGLAALLRRL 107 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhh--hccCCceEEEecccccCC-HHHHHhcccccccC-CCCCCCHHHHHHHHHHH
Confidence 468999999999999999999999997 46676 555553222 12334457776643 33456777666554443
No 496
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.65 E-value=3.5e-05 Score=87.18 Aligned_cols=74 Identities=8% Similarity=0.054 Sum_probs=51.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEec--ChhhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhc
Q 048718 541 RVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVA--SIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCR 615 (1118)
Q Consensus 541 Ei~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~--~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr 615 (1118)
.++||.||||||||||+++|.+++...+.+|.|.+-+.+. .....++..++. |+..+.+.+++.+.+.+...++
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence 5999999999999999999999886334567776644331 111223335554 6666677788888887765554
No 497
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.64 E-value=5.5e-05 Score=66.53 Aligned_cols=35 Identities=34% Similarity=0.617 Sum_probs=27.8
Q ss_pred eeeEEEEeC-CeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 531 RSVTGKLSP-GRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 531 ~nVSl~I~~-GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
++.++++.+ |++++|.|+|||||||||.+|.=.+-
T Consensus 13 ~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 13 DGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred CCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 334556654 67999999999999999999976654
No 498
>PRK08149 ATP synthase SpaL; Validated
Probab=97.64 E-value=8.5e-05 Score=87.98 Aligned_cols=71 Identities=15% Similarity=0.176 Sum_probs=54.9
Q ss_pred cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CceeEEEECCEecCh---h----hhcCeEEEEcCCCC
Q 048718 526 NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGC-IMSGTILVNGKVASI---Q----SYKRIIGFVPQDDI 597 (1118)
Q Consensus 526 ~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~-~~sG~I~inG~~~~~---~----~~r~~IgyV~Qd~~ 597 (1118)
+..+|+++ +.+.+||.++|+|+||+|||||+++|+++..+. ..-|.|-.+|+++.. . ..++++++|+....
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd 216 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSD 216 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCC
Confidence 35799999 999999999999999999999999999988631 123889899987532 1 12356788876543
No 499
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=97.63 E-value=0.00011 Score=69.15 Aligned_cols=46 Identities=35% Similarity=0.554 Sum_probs=35.5
Q ss_pred CCCHHHHH-HHHHHHHHh------h------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048718 653 GISGGQRK-RVNVGLEMV------M------EPSLLILDEPTSGLDSSSSQLLLRALRR 698 (1118)
Q Consensus 653 gLSGGERQ-RVsIArALl------~------~P~lLlLDEPTsGLD~~sa~~i~~~Lr~ 698 (1118)
++|||||| .++++.+++ . .|.+++||||+++||+.....++++|++
T Consensus 32 ~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 32 TLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 49999994 444444332 2 3799999999999999999999999874
No 500
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.61 E-value=4.3e-05 Score=87.64 Aligned_cols=72 Identities=15% Similarity=0.099 Sum_probs=53.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---------hhhcCeEEEEcCCCCCCCCCCHHHHH
Q 048718 538 SPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---------QSYKRIIGFVPQDDIVHGNLTVEENL 608 (1118)
Q Consensus 538 ~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---------~~~r~~IgyV~Qd~~l~~~LTV~EnL 608 (1118)
++|++++|+||||+||||++..|++.+. +..|+|.+.+.+... ...+..+.+++|.....|..++.+++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~--~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l 189 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK--AQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAI 189 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHH
Confidence 4789999999999999999999999986 356789887755311 12245688998876555555666766
Q ss_pred HHH
Q 048718 609 WFS 611 (1118)
Q Consensus 609 ~f~ 611 (1118)
..+
T Consensus 190 ~~~ 192 (318)
T PRK10416 190 QAA 192 (318)
T ss_pred HHH
Confidence 544
Done!