Query 048718
Match_columns 1118
No_of_seqs 682 out of 3620
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 21:41:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048718.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048718hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 3.5E-46 1.2E-50 425.6 29.5 220 512-743 24-252 (366)
2 3tif_A Uncharacterized ABC tra 100.0 3.3E-46 1.1E-50 403.0 27.6 220 513-742 2-232 (235)
3 3gfo_A Cobalt import ATP-bindi 100.0 6.2E-46 2.1E-50 410.0 28.8 219 512-743 7-232 (275)
4 3rlf_A Maltose/maltodextrin im 100.0 7.3E-46 2.5E-50 425.3 30.3 218 512-743 3-222 (381)
5 3fvq_A Fe(3+) IONS import ATP- 100.0 3.3E-46 1.1E-50 425.4 27.0 218 512-743 4-227 (359)
6 2olj_A Amino acid ABC transpor 100.0 1.3E-45 4.4E-50 405.0 30.0 218 512-743 24-247 (263)
7 1b0u_A Histidine permease; ABC 100.0 1.1E-45 3.9E-50 405.0 29.1 218 512-743 6-241 (262)
8 2pcj_A ABC transporter, lipopr 100.0 2.3E-45 8E-50 393.5 28.3 212 512-738 4-222 (224)
9 1vpl_A ABC transporter, ATP-bi 100.0 4.1E-45 1.4E-49 399.6 29.9 220 511-744 14-235 (256)
10 1g6h_A High-affinity branched- 100.0 2.7E-45 9.1E-50 400.7 25.8 219 512-741 7-239 (257)
11 1z47_A CYSA, putative ABC-tran 100.0 6.3E-45 2.2E-49 414.7 29.4 220 511-743 13-234 (355)
12 2it1_A 362AA long hypothetical 100.0 6.7E-45 2.3E-49 415.6 29.4 218 512-743 3-222 (362)
13 1g29_1 MALK, maltose transport 100.0 9.5E-45 3.2E-49 416.0 30.6 218 512-743 3-228 (372)
14 2yyz_A Sugar ABC transporter, 100.0 5.7E-45 1.9E-49 415.8 27.9 218 512-743 3-222 (359)
15 1oxx_K GLCV, glucose, ABC tran 100.0 6E-45 2.1E-49 415.1 26.1 218 512-743 3-229 (353)
16 4g1u_C Hemin import ATP-bindin 100.0 7.4E-45 2.5E-49 399.5 25.9 216 511-742 10-235 (266)
17 1ji0_A ABC transporter; ATP bi 100.0 9.4E-45 3.2E-49 392.7 25.9 217 512-743 6-227 (240)
18 1v43_A Sugar-binding transport 100.0 1.1E-44 3.6E-49 415.4 26.8 218 512-743 11-230 (372)
19 2yz2_A Putative ABC transporte 100.0 3.3E-44 1.1E-48 394.1 26.4 219 512-743 2-226 (266)
20 3d31_A Sulfate/molybdate ABC t 100.0 2.6E-44 8.8E-49 409.0 25.4 213 513-743 2-216 (348)
21 2onk_A Molybdate/tungstate ABC 100.0 6.9E-44 2.4E-48 386.3 24.3 212 513-743 2-215 (240)
22 2d2e_A SUFC protein; ABC-ATPas 100.0 1.6E-43 5.6E-48 385.1 26.5 220 512-741 3-230 (250)
23 2ihy_A ABC transporter, ATP-bi 100.0 7.4E-44 2.5E-48 394.2 22.8 221 511-742 20-250 (279)
24 2ixe_A Antigen peptide transpo 100.0 1.9E-43 6.4E-48 389.3 21.1 221 512-743 16-244 (271)
25 2ff7_A Alpha-hemolysin translo 100.0 3.4E-43 1.2E-47 382.2 22.3 216 511-743 6-231 (247)
26 2zu0_C Probable ATP-dependent 100.0 1.7E-42 6E-47 380.7 27.8 231 512-751 20-260 (267)
27 2nq2_C Hypothetical ABC transp 100.0 1.8E-42 6.2E-47 377.9 27.3 210 512-742 4-215 (253)
28 3nh6_A ATP-binding cassette SU 100.0 3.7E-43 1.3E-47 393.2 21.1 215 511-743 52-276 (306)
29 2qi9_C Vitamin B12 import ATP- 100.0 1.3E-42 4.4E-47 378.4 23.2 207 512-742 4-220 (249)
30 1sgw_A Putative ABC transporte 100.0 1.1E-42 3.6E-47 371.1 17.3 199 510-727 8-206 (214)
31 1mv5_A LMRA, multidrug resista 100.0 1.6E-42 5.6E-47 375.6 18.1 215 513-743 2-225 (243)
32 2ghi_A Transport protein; mult 100.0 2.7E-41 9.4E-46 369.9 25.0 214 512-743 17-241 (260)
33 2pjz_A Hypothetical protein ST 100.0 6.4E-41 2.2E-45 367.8 23.0 208 513-743 2-214 (263)
34 3gd7_A Fusion complex of cysti 100.0 6.4E-41 2.2E-45 386.2 19.0 215 511-743 18-241 (390)
35 2pze_A Cystic fibrosis transme 100.0 1.7E-40 5.8E-45 356.9 20.9 204 512-743 6-217 (229)
36 2cbz_A Multidrug resistance-as 100.0 3.3E-40 1.1E-44 356.6 21.6 210 512-743 3-216 (237)
37 3b60_A Lipid A export ATP-bind 100.0 1.3E-39 4.6E-44 393.2 25.8 217 511-743 340-566 (582)
38 4a82_A Cystic fibrosis transme 100.0 4E-40 1.4E-44 397.6 20.5 216 511-743 338-563 (578)
39 3qf4_A ABC transporter, ATP-bi 100.0 1.9E-40 6.6E-45 401.0 17.6 217 511-744 340-566 (587)
40 2yl4_A ATP-binding cassette SU 100.0 1.1E-39 3.8E-44 394.9 23.2 219 511-743 339-569 (595)
41 3b5x_A Lipid A export ATP-bind 100.0 1.2E-39 4E-44 393.8 22.1 217 511-743 340-566 (582)
42 3qf4_B Uncharacterized ABC tra 100.0 1.7E-39 5.8E-44 393.6 16.1 215 511-743 353-577 (598)
43 4f4c_A Multidrug resistance pr 100.0 2.9E-38 9.9E-43 412.0 19.7 219 511-744 1075-1304(1321)
44 2bbs_A Cystic fibrosis transme 100.0 1.1E-37 3.9E-42 346.5 17.4 199 512-743 40-246 (290)
45 4f4c_A Multidrug resistance pr 100.0 1.8E-37 6.2E-42 404.6 19.7 216 511-743 414-640 (1321)
46 3g5u_A MCG1178, multidrug resi 100.0 1.1E-36 3.7E-41 396.4 19.8 218 511-743 386-612 (1284)
47 3g5u_A MCG1178, multidrug resi 100.0 6.1E-36 2.1E-40 389.3 19.6 218 511-743 1029-1257(1284)
48 3bk7_A ABC transporter ATP-bin 100.0 1.6E-34 5.3E-39 350.2 21.9 206 511-744 356-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 1.9E-34 6.4E-39 345.4 20.1 206 511-744 286-493 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 8.4E-34 2.9E-38 339.6 20.4 207 510-742 267-475 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 6.6E-33 2.2E-37 335.8 17.3 203 516-744 350-559 (608)
52 3ux8_A Excinuclease ABC, A sub 100.0 8.1E-33 2.8E-37 339.2 15.0 207 526-743 30-297 (670)
53 3bk7_A ABC transporter ATP-bin 100.0 3E-33 1E-37 338.9 11.1 192 516-729 95-303 (607)
54 1yqt_A RNAse L inhibitor; ATP- 100.0 5.6E-33 1.9E-37 332.7 11.8 192 516-729 25-233 (538)
55 2iw3_A Elongation factor 3A; a 100.0 2.7E-31 9.3E-36 333.2 23.7 200 510-744 433-635 (986)
56 2iw3_A Elongation factor 3A; a 100.0 3.9E-32 1.3E-36 340.9 13.5 208 511-738 670-981 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 4.1E-31 1.4E-35 324.1 17.6 199 526-743 334-639 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 7.8E-30 2.7E-34 308.9 12.0 193 517-729 82-296 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 9.5E-30 3.2E-34 304.6 9.0 189 518-729 5-212 (538)
60 3pih_A Uvrabc system protein A 100.0 2.7E-28 9.1E-33 305.7 18.3 201 527-743 597-901 (916)
61 2r6f_A Excinuclease ABC subuni 100.0 2.3E-28 7.9E-33 304.8 17.1 210 511-743 628-941 (972)
62 2vf7_A UVRA2, excinuclease ABC 100.0 3.2E-28 1.1E-32 302.9 17.9 210 511-743 501-826 (842)
63 2ygr_A Uvrabc system protein A 99.9 9.5E-28 3.3E-32 300.3 18.0 210 511-743 646-959 (993)
64 4aby_A DNA repair protein RECN 99.9 2.8E-26 9.5E-31 264.4 18.8 203 528-736 49-380 (415)
65 2npi_A Protein CLP1; CLP1-PCF1 99.9 2.3E-29 8E-34 295.9 -8.6 196 513-742 119-336 (460)
66 1e69_A Chromosome segregation 99.9 1.4E-23 4.8E-28 235.6 14.8 202 531-742 16-311 (322)
67 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 3.4E-23 1.2E-27 236.9 16.0 82 651-735 277-364 (365)
68 3b85_A Phosphate starvation-in 99.9 2.9E-26 1E-30 243.3 -8.9 146 526-715 12-160 (208)
69 4gp7_A Metallophosphoesterase; 99.9 4.2E-24 1.4E-28 218.6 3.1 144 532-715 1-161 (171)
70 1tq4_A IIGP1, interferon-induc 99.9 4.4E-25 1.5E-29 256.1 -11.7 170 527-724 36-247 (413)
71 1znw_A Guanylate kinase, GMP k 99.9 1.1E-25 3.6E-30 236.6 -17.7 183 527-731 9-205 (207)
72 1ye8_A Protein THEP1, hypothet 99.8 1.7E-22 5.8E-27 209.2 3.9 145 542-735 2-159 (178)
73 2v9p_A Replication protein E1; 99.8 1.8E-25 6.1E-30 250.0 -22.3 169 513-749 102-271 (305)
74 3b9q_A Chloroplast SRP recepto 99.8 2.7E-22 9.3E-27 224.2 -0.6 172 530-730 90-282 (302)
75 3sop_A Neuronal-specific septi 99.8 9.1E-23 3.1E-27 224.5 -4.4 148 542-714 4-151 (270)
76 2dpy_A FLII, flagellum-specifi 99.8 2.6E-22 8.8E-27 234.9 -9.4 191 512-742 131-342 (438)
77 2og2_A Putative signal recogni 99.8 3E-21 1E-25 220.5 -0.5 153 531-712 148-313 (359)
78 2vf7_A UVRA2, excinuclease ABC 99.8 2.9E-19 1E-23 222.6 15.7 110 625-742 356-473 (842)
79 1z6g_A Guanylate kinase; struc 99.8 1.3E-23 4.4E-28 223.4 -20.6 152 528-701 11-175 (218)
80 2pt7_A CAG-ALFA; ATPase, prote 99.8 1E-20 3.6E-25 213.8 0.1 131 528-730 159-290 (330)
81 3aez_A Pantothenate kinase; tr 99.8 2.6E-22 8.9E-27 225.3 -13.1 123 537-686 87-209 (312)
82 1cr0_A DNA primase/helicase; R 99.8 5.1E-20 1.7E-24 203.2 3.7 183 527-730 22-235 (296)
83 2o5v_A DNA replication and rep 99.8 2E-18 6.8E-23 197.3 14.7 81 653-742 265-354 (359)
84 3qkt_A DNA double-strand break 99.8 5.4E-18 1.8E-22 191.7 16.5 75 652-728 247-327 (339)
85 3pih_A Uvrabc system protein A 99.8 7.3E-19 2.5E-23 220.8 9.9 164 555-743 383-559 (916)
86 2jeo_A Uridine-cytidine kinase 99.8 5.1E-20 1.7E-24 198.4 -0.6 156 525-713 10-165 (245)
87 2o8b_B DNA mismatch repair pro 99.7 2.1E-19 7.3E-24 228.7 2.9 171 512-739 750-937 (1022)
88 4ad8_A DNA repair protein RECN 99.7 3E-18 1E-22 204.3 10.8 76 652-730 395-473 (517)
89 1tf7_A KAIC; homohexamer, hexa 99.7 4.9E-21 1.7E-25 228.7 -14.8 168 526-729 24-209 (525)
90 1tf7_A KAIC; homohexamer, hexa 99.7 5.2E-18 1.8E-22 202.6 10.0 155 534-730 275-443 (525)
91 2obl_A ESCN; ATPase, hydrolase 99.7 1.5E-19 5.2E-24 205.7 -4.1 191 513-742 46-253 (347)
92 2ehv_A Hypothetical protein PH 99.7 6.5E-19 2.2E-23 187.4 0.2 165 535-729 25-207 (251)
93 2r6f_A Excinuclease ABC subuni 99.7 3.1E-17 1.1E-21 205.3 15.0 135 601-743 451-599 (972)
94 2ygr_A Uvrabc system protein A 99.7 4.3E-17 1.5E-21 204.6 12.9 132 600-743 467-616 (993)
95 3thx_A DNA mismatch repair pro 99.7 4.4E-17 1.5E-21 205.4 12.4 166 512-742 631-811 (934)
96 2qnr_A Septin-2, protein NEDD5 99.7 2E-19 6.9E-24 200.6 -7.9 164 516-714 2-168 (301)
97 4a74_A DNA repair and recombin 99.7 4.2E-18 1.4E-22 178.9 1.0 152 535-730 20-200 (231)
98 3asz_A Uridine kinase; cytidin 99.7 1.2E-19 4.2E-24 189.6 -11.5 146 537-714 3-162 (211)
99 2eyu_A Twitching motility prot 99.7 7.6E-18 2.6E-22 184.5 1.5 131 528-728 15-146 (261)
100 3thx_B DNA mismatch repair pro 99.7 5.5E-18 1.9E-22 213.1 0.2 145 526-724 659-805 (918)
101 1rj9_A FTSY, signal recognitio 99.7 4.4E-18 1.5E-22 190.3 -1.9 149 539-714 101-259 (304)
102 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 3.2E-16 1.1E-20 157.9 11.4 76 651-728 55-136 (148)
103 1ewq_A DNA mismatch repair pro 99.6 2.6E-17 8.8E-22 204.1 2.1 144 512-715 550-700 (765)
104 1w1w_A Structural maintenance 99.6 9.2E-16 3.1E-20 178.6 14.6 75 653-729 333-411 (430)
105 3szr_A Interferon-induced GTP- 99.6 6.6E-18 2.3E-22 205.2 -5.5 191 512-742 10-235 (608)
106 1nlf_A Regulatory protein REPA 99.6 2.3E-15 8E-20 164.9 10.3 152 536-715 26-183 (279)
107 2w0m_A SSO2452; RECA, SSPF, un 99.6 1.1E-16 3.9E-21 167.5 -0.6 167 527-729 9-191 (235)
108 1wb9_A DNA mismatch repair pro 99.6 5.3E-16 1.8E-20 193.4 4.8 155 526-736 594-750 (800)
109 1pui_A ENGB, probable GTP-bind 99.6 1.8E-17 6E-22 171.9 -7.2 176 513-705 4-202 (210)
110 1pzn_A RAD51, DNA repair and r 99.6 5.2E-17 1.8E-21 184.8 -4.2 143 529-714 119-287 (349)
111 2i3b_A HCR-ntpase, human cance 99.6 1.3E-17 4.5E-22 174.4 -9.6 156 540-736 1-168 (189)
112 2qag_C Septin-7; cell cycle, c 99.5 1.4E-16 4.9E-21 185.3 -3.4 164 512-714 11-178 (418)
113 3jvv_A Twitching mobility prot 99.5 1.2E-15 4E-20 174.3 3.5 126 536-729 119-245 (356)
114 2qag_B Septin-6, protein NEDD5 99.5 1E-15 3.5E-20 178.1 -6.1 185 514-712 18-218 (427)
115 1s96_A Guanylate kinase, GMP k 99.5 2.1E-15 7.2E-20 161.1 -3.5 148 535-746 11-162 (219)
116 2cvh_A DNA repair and recombin 99.4 2.7E-13 9.3E-18 141.4 12.3 154 528-730 7-185 (220)
117 1zp6_A Hypothetical protein AT 99.4 4E-16 1.4E-20 160.1 -9.5 139 537-699 6-147 (191)
118 2gza_A Type IV secretion syste 99.4 2.9E-15 1E-19 171.1 -4.1 136 530-730 165-302 (361)
119 3kta_B Chromosome segregation 99.4 8.3E-13 2.8E-17 136.4 14.0 89 652-743 63-157 (173)
120 2bbw_A Adenylate kinase 4, AK4 99.4 2.4E-16 8.2E-21 169.5 -14.6 147 539-703 26-200 (246)
121 2bdt_A BH3686; alpha-beta prot 99.4 1.9E-17 6.6E-22 170.3 -22.6 172 540-742 2-182 (189)
122 1nij_A Hypothetical protein YJ 99.4 1.2E-16 4.2E-21 179.3 -19.1 156 541-714 5-190 (318)
123 1lw7_A Transcriptional regulat 99.4 3.4E-16 1.2E-20 178.5 -16.5 162 529-727 157-341 (365)
124 2rcn_A Probable GTPase ENGC; Y 99.4 2.9E-13 1E-17 154.4 6.0 141 528-700 204-345 (358)
125 2yhs_A FTSY, cell division pro 99.4 2.3E-14 8E-19 169.0 -3.5 154 530-712 283-448 (503)
126 2ewv_A Twitching motility prot 99.4 8.3E-14 2.8E-18 159.9 1.1 130 528-727 126-256 (372)
127 2f1r_A Molybdopterin-guanine d 99.3 7.7E-15 2.6E-19 151.2 -7.5 136 541-703 3-163 (171)
128 3e70_C DPA, signal recognition 99.3 2.1E-13 7E-18 154.2 0.4 143 538-713 127-279 (328)
129 1htw_A HI0065; nucleotide-bind 99.3 1.2E-14 4E-19 147.9 -9.0 85 518-610 13-97 (158)
130 1n0w_A DNA repair protein RAD5 99.3 2.4E-12 8.1E-17 136.2 8.3 151 535-729 19-208 (243)
131 2qm8_A GTPase/ATPase; G protei 99.3 9.4E-15 3.2E-19 165.5 -12.2 171 516-700 33-259 (337)
132 3auy_A DNA double-strand break 99.3 1.4E-11 4.8E-16 140.9 12.8 77 652-731 279-362 (371)
133 1odf_A YGR205W, hypothetical 3 99.3 3.1E-13 1.1E-17 150.2 -1.7 134 538-688 29-169 (290)
134 1udx_A The GTP-binding protein 99.2 3E-13 1E-17 157.4 -4.0 166 530-720 147-315 (416)
135 2yv5_A YJEQ protein; hydrolase 99.2 5.2E-13 1.8E-17 149.0 -2.3 121 538-667 163-301 (302)
136 1p9r_A General secretion pathw 99.2 8E-15 2.7E-19 170.7 -18.4 145 513-677 144-315 (418)
137 3ec2_A DNA replication protein 99.2 1.4E-11 4.9E-16 125.6 6.8 48 669-716 98-146 (180)
138 2kjq_A DNAA-related protein; s 99.1 1.9E-11 6.5E-16 122.7 5.2 45 669-714 81-126 (149)
139 1sxj_E Activator 1 40 kDa subu 99.1 3.6E-11 1.2E-15 134.9 7.6 136 543-715 39-176 (354)
140 3c8u_A Fructokinase; YP_612366 99.1 2.1E-13 7.4E-18 143.0 -10.0 149 537-723 19-168 (208)
141 2oap_1 GSPE-2, type II secreti 99.1 1.6E-13 5.6E-18 163.4 -15.7 172 527-715 247-452 (511)
142 3lda_A DNA repair protein RAD5 99.1 4.6E-10 1.6E-14 130.1 12.9 53 660-712 260-327 (400)
143 1in4_A RUVB, holliday junction 99.0 1.2E-12 4.1E-17 147.5 -11.0 151 526-701 30-194 (334)
144 1u0l_A Probable GTPase ENGC; p 99.0 3.4E-11 1.2E-15 134.1 0.1 103 537-648 166-291 (301)
145 1sq5_A Pantothenate kinase; P- 99.0 5.1E-13 1.8E-17 149.2 -15.3 140 513-686 38-199 (308)
146 1lvg_A Guanylate kinase, GMP k 99.0 7.1E-14 2.4E-18 146.2 -22.0 152 538-728 2-172 (198)
147 2x8a_A Nuclear valosin-contain 99.0 2.1E-13 7.3E-18 150.0 -20.1 141 527-695 33-189 (274)
148 1t9h_A YLOQ, probable GTPase E 98.9 2.9E-11 9.9E-16 135.5 -4.0 118 536-661 169-303 (307)
149 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 7.7E-13 2.6E-17 152.8 -18.3 170 536-740 16-209 (392)
150 2r6a_A DNAB helicase, replicat 98.9 8.4E-10 2.9E-14 129.5 4.4 179 527-730 190-399 (454)
151 2dr3_A UPF0273 protein PH0284; 98.8 1.6E-10 5.6E-15 122.2 -2.2 60 670-729 127-196 (247)
152 1vma_A Cell division protein F 98.8 2.7E-09 9.2E-14 119.5 5.1 112 534-700 98-212 (306)
153 1ls1_A Signal recognition part 98.7 2.5E-08 8.5E-13 110.9 10.6 118 531-699 91-209 (295)
154 2ius_A DNA translocase FTSK; n 98.7 5.5E-10 1.9E-14 132.8 -3.1 164 532-714 159-343 (512)
155 1iy2_A ATP-dependent metallopr 98.7 1.5E-11 5.3E-16 134.4 -17.1 124 527-674 62-190 (278)
156 2zr9_A Protein RECA, recombina 98.7 2.5E-08 8.5E-13 113.6 8.7 146 536-737 57-236 (349)
157 3tr0_A Guanylate kinase, GMP k 98.7 1.1E-09 3.6E-14 113.2 -2.7 68 534-607 1-71 (205)
158 3euj_A Chromosome partition pr 98.7 6.6E-09 2.2E-13 122.9 3.1 51 527-580 17-67 (483)
159 1ixz_A ATP-dependent metallopr 98.6 2.2E-11 7.5E-16 131.0 -16.9 124 527-674 38-166 (254)
160 3k1j_A LON protease, ATP-depen 98.6 4.3E-10 1.5E-14 136.6 -7.8 161 525-698 45-227 (604)
161 1oix_A RAS-related protein RAB 98.6 4E-09 1.4E-13 108.5 0.3 38 660-699 152-189 (191)
162 2px0_A Flagellar biosynthesis 98.6 3.5E-08 1.2E-12 109.9 5.3 140 538-735 103-246 (296)
163 3hr8_A Protein RECA; alpha and 98.4 1E-07 3.4E-12 108.9 5.2 71 536-608 57-128 (356)
164 1qhl_A Protein (cell division 98.4 9E-09 3.1E-13 110.6 -4.3 73 511-595 8-91 (227)
165 3lnc_A Guanylate kinase, GMP k 98.4 6.4E-09 2.2E-13 110.4 -5.4 39 527-565 14-53 (231)
166 2f9l_A RAB11B, member RAS onco 98.3 2E-07 7E-12 95.9 4.3 37 662-700 130-166 (199)
167 1svm_A Large T antigen; AAA+ f 98.3 9.8E-10 3.3E-14 126.4 -15.1 144 527-682 156-312 (377)
168 4eun_A Thermoresistant glucoki 98.3 3.1E-08 1.1E-12 103.0 -3.7 59 535-599 24-84 (200)
169 2qtf_A Protein HFLX, GTP-bindi 98.2 2.2E-06 7.4E-11 98.2 10.0 148 542-701 181-353 (364)
170 2ce7_A Cell division protein F 98.2 9.8E-07 3.3E-11 104.4 6.2 59 656-714 93-165 (476)
171 4a1f_A DNAB helicase, replicat 98.2 9.5E-07 3.2E-11 100.2 5.1 128 529-711 35-164 (338)
172 3nwj_A ATSK2; P loop, shikimat 98.1 2.8E-07 9.5E-12 100.4 -2.1 52 512-564 17-72 (250)
173 3kta_A Chromosome segregation 98.1 1.5E-06 5E-11 88.3 3.4 34 531-565 18-51 (182)
174 2j41_A Guanylate kinase; GMP, 98.0 1.1E-06 3.9E-11 90.4 1.9 30 536-565 2-31 (207)
175 2e87_A Hypothetical protein PH 98.0 6E-06 2.1E-10 93.8 8.0 60 653-714 231-293 (357)
176 2dhr_A FTSH; AAA+ protein, hex 98.0 5.5E-08 1.9E-12 115.6 -10.7 129 528-682 54-187 (499)
177 1jjv_A Dephospho-COA kinase; P 98.0 1.2E-06 4.1E-11 90.9 0.5 127 542-728 4-131 (206)
178 1zu4_A FTSY; GTPase, signal re 97.9 1.4E-06 4.7E-11 98.1 0.6 80 529-610 94-186 (320)
179 2xau_A PRE-mRNA-splicing facto 97.9 8.3E-06 2.9E-10 101.9 7.4 74 653-727 190-265 (773)
180 4e22_A Cytidylate kinase; P-lo 97.9 7.8E-07 2.7E-11 96.2 -1.9 57 538-596 25-96 (252)
181 3uie_A Adenylyl-sulfate kinase 97.9 7.1E-07 2.4E-11 92.7 -3.4 51 527-580 12-64 (200)
182 3a00_A Guanylate kinase, GMP k 97.8 2.4E-06 8.2E-11 87.7 0.1 26 540-565 1-26 (186)
183 2dy1_A Elongation factor G; tr 97.8 6.4E-06 2.2E-10 101.3 3.8 133 534-715 3-138 (665)
184 3vaa_A Shikimate kinase, SK; s 97.8 9.2E-06 3.2E-10 84.2 3.6 39 526-564 11-49 (199)
185 3t34_A Dynamin-related protein 97.8 4.1E-05 1.4E-09 86.8 8.6 34 527-563 24-57 (360)
186 3tqc_A Pantothenate kinase; bi 97.7 3.9E-07 1.3E-11 102.7 -8.2 24 542-565 94-117 (321)
187 1fnn_A CDC6P, cell division co 97.7 7.4E-05 2.5E-09 83.9 9.4 44 670-714 124-170 (389)
188 1knq_A Gluconate kinase; ALFA/ 97.7 1.6E-06 5.5E-11 87.5 -3.9 37 538-580 6-42 (175)
189 3b9p_A CG5977-PA, isoform A; A 97.7 0.00018 6E-09 78.6 11.6 71 655-725 97-184 (297)
190 1kgd_A CASK, peripheral plasma 97.6 2.1E-05 7.3E-10 80.3 3.3 36 539-575 4-39 (180)
191 3bh0_A DNAB-like replicative h 97.6 3.5E-05 1.2E-09 86.1 5.2 131 528-711 56-189 (315)
192 2z4s_A Chromosomal replication 97.6 1.7E-05 5.6E-10 92.9 1.4 70 670-740 193-264 (440)
193 2vp4_A Deoxynucleoside kinase; 97.5 1.9E-05 6.5E-10 83.9 1.5 38 537-580 17-54 (230)
194 2z43_A DNA repair and recombin 97.5 0.00064 2.2E-08 76.1 13.3 140 535-713 102-258 (324)
195 1v5w_A DMC1, meiotic recombina 97.5 0.00047 1.6E-08 78.0 12.3 140 535-713 117-274 (343)
196 2qt1_A Nicotinamide riboside k 97.4 6.5E-05 2.2E-09 77.9 4.1 29 536-564 17-45 (207)
197 3tau_A Guanylate kinase, GMP k 97.4 6.7E-05 2.3E-09 78.5 3.9 28 538-565 6-33 (208)
198 1rz3_A Hypothetical protein rb 97.4 2.9E-05 1E-09 80.7 0.3 39 537-577 19-57 (201)
199 2q6t_A DNAB replication FORK h 97.3 0.00099 3.4E-08 77.8 13.0 153 528-711 188-361 (444)
200 3cf0_A Transitional endoplasmi 97.3 0.00027 9.1E-09 78.2 6.7 28 538-565 47-74 (301)
201 3kl4_A SRP54, signal recogniti 97.3 0.00038 1.3E-08 81.4 8.2 27 539-565 96-122 (433)
202 3cr8_A Sulfate adenylyltranfer 97.2 6.8E-05 2.3E-09 90.3 0.7 42 536-579 365-408 (552)
203 1kag_A SKI, shikimate kinase I 97.2 0.00014 4.9E-09 72.7 2.6 27 539-565 3-29 (173)
204 2qby_A CDC6 homolog 1, cell di 97.1 0.0001 3.5E-09 82.3 1.5 27 539-565 44-70 (386)
205 3ney_A 55 kDa erythrocyte memb 97.1 0.00019 6.3E-09 75.6 2.9 28 538-565 17-44 (197)
206 3llm_A ATP-dependent RNA helic 97.1 0.00011 3.9E-09 78.0 1.1 67 655-723 162-229 (235)
207 1ypw_A Transitional endoplasmi 97.0 0.00048 1.6E-08 86.5 5.4 30 536-565 234-263 (806)
208 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00041 1.4E-08 69.3 3.8 30 532-562 16-45 (149)
209 2p67_A LAO/AO transport system 96.9 7.7E-05 2.6E-09 84.3 -2.6 49 527-577 43-91 (341)
210 3m6a_A ATP-dependent protease 96.8 0.00019 6.5E-09 86.2 0.0 47 529-578 98-144 (543)
211 1mky_A Probable GTP-binding pr 96.8 0.00095 3.2E-08 77.8 5.8 40 541-580 181-230 (439)
212 1l8q_A Chromosomal replication 96.8 0.0023 8E-08 70.9 8.2 46 669-714 96-142 (324)
213 3ice_A Transcription terminati 96.7 0.00017 5.7E-09 83.1 -1.2 52 512-564 133-198 (422)
214 2qag_A Septin-2, protein NEDD5 96.7 4.3E-05 1.5E-09 87.2 -6.3 89 512-610 17-105 (361)
215 4eaq_A DTMP kinase, thymidylat 96.7 0.00056 1.9E-08 73.0 2.7 36 530-565 13-51 (229)
216 2www_A Methylmalonic aciduria 96.7 0.00038 1.3E-08 79.0 1.1 38 539-578 73-110 (349)
217 1u94_A RECA protein, recombina 96.7 0.03 1E-06 63.8 16.7 28 536-563 59-86 (356)
218 3h4m_A Proteasome-activating n 96.6 0.0029 9.9E-08 68.4 7.5 27 539-565 50-76 (285)
219 1m7g_A Adenylylsulfate kinase; 96.6 0.00046 1.6E-08 72.0 0.9 39 538-578 23-63 (211)
220 2w58_A DNAI, primosome compone 96.6 0.0022 7.6E-08 65.8 6.1 24 541-564 55-78 (202)
221 1cke_A CK, MSSA, protein (cyti 96.6 0.0011 3.7E-08 69.2 3.6 58 539-596 4-74 (227)
222 2gj8_A MNME, tRNA modification 96.5 0.0025 8.6E-08 63.9 6.0 27 538-564 2-28 (172)
223 3lxx_A GTPase IMAP family memb 96.5 0.0085 2.9E-07 63.4 10.3 24 542-565 31-54 (239)
224 2pez_A Bifunctional 3'-phospho 96.5 0.0014 4.6E-08 66.3 3.7 28 538-565 3-30 (179)
225 1m2o_B GTP-binding protein SAR 96.5 0.0022 7.4E-08 65.4 5.1 35 528-563 12-46 (190)
226 3d8b_A Fidgetin-like protein 1 96.4 0.011 3.9E-07 66.8 11.0 26 539-564 116-141 (357)
227 2qor_A Guanylate kinase; phosp 96.4 0.0012 4.1E-08 68.4 2.7 29 537-565 9-37 (204)
228 2b8t_A Thymidine kinase; deoxy 96.4 0.0044 1.5E-07 66.3 7.0 52 671-727 89-149 (223)
229 1q57_A DNA primase/helicase; d 96.4 0.018 6.1E-07 68.2 12.9 33 530-562 232-264 (503)
230 3qks_A DNA double-strand break 96.4 0.0018 6.1E-08 67.8 3.8 31 532-563 16-46 (203)
231 3bos_A Putative DNA replicatio 96.3 0.0015 5E-08 67.9 3.0 45 670-714 103-149 (242)
232 1y63_A LMAJ004144AAA protein; 96.3 0.0016 5.5E-08 66.5 3.2 32 532-563 2-33 (184)
233 3bgw_A DNAB-like replicative h 96.3 0.0045 1.5E-07 72.6 7.0 35 529-563 186-220 (444)
234 2i1q_A DNA repair and recombin 96.3 0.013 4.3E-07 65.2 10.2 28 535-562 93-120 (322)
235 2if2_A Dephospho-COA kinase; a 96.1 0.0024 8.2E-08 65.7 3.0 21 542-562 3-23 (204)
236 1f6b_A SAR1; gtpases, N-termin 96.1 0.0011 3.8E-08 68.1 0.4 36 527-563 13-48 (198)
237 1xwi_A SKD1 protein; VPS4B, AA 96.0 0.039 1.3E-06 61.6 12.4 26 539-564 44-69 (322)
238 2wjg_A FEOB, ferrous iron tran 95.9 0.0063 2.1E-07 60.9 5.0 22 542-563 9-30 (188)
239 2p5t_B PEZT; postsegregational 95.9 0.0017 6E-08 69.8 0.9 37 538-578 30-66 (253)
240 3auy_A DNA double-strand break 95.9 0.0059 2E-07 69.5 5.2 31 530-561 16-46 (371)
241 2yvu_A Probable adenylyl-sulfa 95.8 0.0044 1.5E-07 62.9 3.6 28 538-565 11-38 (186)
242 1xp8_A RECA protein, recombina 95.8 0.071 2.4E-06 61.0 13.9 27 536-562 70-96 (366)
243 2ffh_A Protein (FFH); SRP54, s 95.8 0.0019 6.5E-08 75.4 0.9 46 531-580 91-136 (425)
244 3cm0_A Adenylate kinase; ATP-b 95.8 0.0044 1.5E-07 62.5 3.5 26 538-563 2-27 (186)
245 2qz4_A Paraplegin; AAA+, SPG7, 95.8 0.022 7.6E-07 60.3 9.0 25 540-564 39-63 (262)
246 1ega_A Protein (GTP-binding pr 95.8 0.0034 1.2E-07 69.6 2.7 52 654-712 101-158 (301)
247 3t61_A Gluconokinase; PSI-biol 95.7 0.0041 1.4E-07 64.0 2.9 25 540-564 18-42 (202)
248 2v1u_A Cell division control p 95.7 0.0072 2.5E-07 67.4 5.0 26 539-564 43-68 (387)
249 2wji_A Ferrous iron transport 95.7 0.0054 1.8E-07 60.8 3.5 23 542-564 5-27 (165)
250 2ohf_A Protein OLA1, GTP-bindi 95.7 0.0042 1.4E-07 71.8 3.0 42 536-577 18-68 (396)
251 2ga8_A Hypothetical 39.9 kDa p 95.6 0.0013 4.4E-08 75.1 -1.5 38 528-565 10-49 (359)
252 3kb2_A SPBC2 prophage-derived 95.6 0.0058 2E-07 60.4 3.4 23 542-564 3-25 (173)
253 1qhx_A CPT, protein (chloramph 95.6 0.0065 2.2E-07 60.8 3.7 26 540-565 3-28 (178)
254 1sxj_C Activator 1 40 kDa subu 95.6 0.0014 4.6E-08 73.5 -1.6 39 527-565 31-71 (340)
255 1j8m_F SRP54, signal recogniti 95.5 0.0015 5.1E-08 72.7 -1.7 42 533-577 92-133 (297)
256 1q3t_A Cytidylate kinase; nucl 95.3 0.0079 2.7E-07 63.7 3.5 27 538-564 14-40 (236)
257 1lv7_A FTSH; alpha/beta domain 95.3 0.0055 1.9E-07 65.5 2.2 23 543-565 48-70 (257)
258 1kht_A Adenylate kinase; phosp 95.3 0.0089 3E-07 60.1 3.6 26 539-564 2-27 (192)
259 2rhm_A Putative kinase; P-loop 95.3 0.0077 2.6E-07 60.9 3.1 27 538-564 3-29 (193)
260 3cmw_A Protein RECA, recombina 95.3 0.035 1.2E-06 74.4 10.1 29 536-564 728-756 (1706)
261 2zej_A Dardarin, leucine-rich 95.2 0.0082 2.8E-07 60.5 3.0 23 542-564 4-26 (184)
262 3lw7_A Adenylate kinase relate 95.1 0.01 3.4E-07 58.3 3.3 19 542-560 3-21 (179)
263 1np6_A Molybdopterin-guanine d 95.1 0.0098 3.4E-07 61.1 3.3 37 541-577 7-44 (174)
264 2ze6_A Isopentenyl transferase 95.0 0.011 3.9E-07 63.7 3.5 24 541-564 2-25 (253)
265 1vht_A Dephospho-COA kinase; s 95.0 0.013 4.3E-07 61.1 3.7 24 539-562 3-26 (218)
266 2v54_A DTMP kinase, thymidylat 95.0 0.012 4.1E-07 60.1 3.4 26 539-564 3-28 (204)
267 1gvn_B Zeta; postsegregational 95.0 0.012 4E-07 65.0 3.6 35 539-577 32-66 (287)
268 2plr_A DTMP kinase, probable t 94.9 0.014 4.9E-07 59.6 3.9 27 539-565 3-29 (213)
269 2jaq_A Deoxyguanosine kinase; 94.9 0.013 4.6E-07 59.5 3.5 24 542-565 2-25 (205)
270 3trf_A Shikimate kinase, SK; a 94.9 0.014 4.7E-07 58.9 3.5 26 539-564 4-29 (185)
271 3r20_A Cytidylate kinase; stru 94.9 0.013 4.4E-07 63.1 3.5 25 540-564 9-33 (233)
272 4dcu_A GTP-binding protein ENG 94.9 0.036 1.2E-06 64.8 7.6 54 657-714 88-142 (456)
273 1ly1_A Polynucleotide kinase; 94.9 0.015 5E-07 57.9 3.7 22 541-562 3-24 (181)
274 3iij_A Coilin-interacting nucl 94.8 0.013 4.5E-07 59.0 3.1 26 538-563 9-34 (180)
275 2qp9_X Vacuolar protein sortin 94.7 0.061 2.1E-06 60.9 8.5 26 539-564 83-108 (355)
276 4b4t_J 26S protease regulatory 94.7 0.13 4.5E-06 59.5 11.4 23 543-565 185-207 (405)
277 2wwf_A Thymidilate kinase, put 94.6 0.016 5.6E-07 59.4 3.5 27 538-564 8-34 (212)
278 2c95_A Adenylate kinase 1; tra 94.6 0.016 5.5E-07 58.6 3.2 27 538-564 7-33 (196)
279 4ag6_A VIRB4 ATPase, type IV s 94.6 0.013 4.3E-07 67.0 2.6 36 539-576 34-69 (392)
280 1gtv_A TMK, thymidylate kinase 94.6 0.0084 2.9E-07 61.7 1.0 24 542-565 2-25 (214)
281 1uf9_A TT1252 protein; P-loop, 94.6 0.019 6.3E-07 58.5 3.6 24 540-563 8-31 (203)
282 1ex7_A Guanylate kinase; subst 94.5 0.017 5.8E-07 60.0 3.2 24 542-565 3-26 (186)
283 1tev_A UMP-CMP kinase; ploop, 94.5 0.02 7E-07 57.5 3.8 25 539-563 2-26 (196)
284 1via_A Shikimate kinase; struc 94.5 0.018 6.1E-07 57.8 3.2 23 542-564 6-28 (175)
285 3vfd_A Spastin; ATPase, microt 94.5 0.17 5.7E-06 57.7 11.7 26 539-564 147-172 (389)
286 2bwj_A Adenylate kinase 5; pho 94.5 0.0063 2.1E-07 61.8 -0.2 28 537-564 9-36 (199)
287 1nn5_A Similar to deoxythymidy 94.5 0.019 6.4E-07 59.0 3.4 27 538-564 7-33 (215)
288 1nks_A Adenylate kinase; therm 94.4 0.018 6.3E-07 57.8 3.2 23 542-564 3-25 (194)
289 3cmw_A Protein RECA, recombina 94.4 0.53 1.8E-05 63.3 17.4 35 529-563 370-406 (1706)
290 3io5_A Recombination and repai 94.3 0.027 9.1E-07 63.5 4.4 25 536-561 25-49 (333)
291 1xx6_A Thymidine kinase; NESG, 94.2 0.058 2E-06 56.1 6.5 52 671-727 81-141 (191)
292 1aky_A Adenylate kinase; ATP:A 94.2 0.026 8.9E-07 58.8 3.7 27 538-564 2-28 (220)
293 3k53_A Ferrous iron transport 94.1 0.021 7.1E-07 61.8 2.9 23 542-564 5-27 (271)
294 3ihw_A Centg3; RAS, centaurin, 94.1 0.05 1.7E-06 54.9 5.5 22 542-563 22-43 (184)
295 1z2a_A RAS-related protein RAB 94.0 0.025 8.4E-07 55.0 3.0 23 542-564 7-29 (168)
296 2vli_A Antibiotic resistance p 94.0 0.02 6.7E-07 57.4 2.3 26 539-564 4-29 (183)
297 2erx_A GTP-binding protein DI- 94.0 0.028 9.5E-07 54.7 3.3 23 542-564 5-27 (172)
298 1kao_A RAP2A; GTP-binding prot 93.9 0.027 9.2E-07 54.4 3.1 23 542-564 5-27 (167)
299 2ged_A SR-beta, signal recogni 93.9 0.026 8.9E-07 56.7 3.1 23 542-564 50-72 (193)
300 2nzj_A GTP-binding protein REM 93.9 0.028 9.7E-07 55.0 3.3 23 542-564 6-28 (175)
301 2z0h_A DTMP kinase, thymidylat 93.9 0.03 1E-06 56.7 3.4 23 542-564 2-24 (197)
302 3cmu_A Protein RECA, recombina 93.9 0.12 4E-06 70.4 9.9 35 529-563 370-406 (2050)
303 1u8z_A RAS-related protein RAL 93.8 0.028 9.7E-07 54.3 3.0 23 542-564 6-28 (168)
304 3ake_A Cytidylate kinase; CMP 93.8 0.029 1E-06 57.2 3.3 23 542-564 4-26 (208)
305 2ce2_X GTPase HRAS; signaling 93.8 0.026 9E-07 54.3 2.7 23 542-564 5-27 (166)
306 4b4t_L 26S protease subunit RP 93.8 0.37 1.3E-05 56.4 12.8 26 539-564 214-239 (437)
307 1zd8_A GTP:AMP phosphotransfer 93.8 0.029 1E-06 58.8 3.3 27 538-564 5-31 (227)
308 3q72_A GTP-binding protein RAD 93.8 0.024 8.2E-07 55.2 2.4 23 542-564 4-26 (166)
309 2dyk_A GTP-binding protein; GT 93.8 0.03 1E-06 54.1 3.1 23 542-564 3-25 (161)
310 1z0j_A RAB-22, RAS-related pro 93.7 0.031 1.1E-06 54.4 3.1 23 542-564 8-30 (170)
311 3q85_A GTP-binding protein REM 93.7 0.032 1.1E-06 54.4 3.2 22 543-564 5-26 (169)
312 3hu3_A Transitional endoplasmi 93.7 0.078 2.7E-06 62.9 7.1 27 538-564 236-262 (489)
313 1xjc_A MOBB protein homolog; s 93.7 0.033 1.1E-06 57.1 3.3 24 541-564 5-28 (169)
314 3fb4_A Adenylate kinase; psych 93.7 0.034 1.1E-06 57.6 3.4 23 542-564 2-24 (216)
315 1ek0_A Protein (GTP-binding pr 93.7 0.031 1.1E-06 54.2 3.0 23 542-564 5-27 (170)
316 1z08_A RAS-related protein RAB 93.7 0.032 1.1E-06 54.4 3.1 23 542-564 8-30 (170)
317 2cdn_A Adenylate kinase; phosp 93.7 0.038 1.3E-06 56.7 3.7 26 539-564 19-44 (201)
318 1g16_A RAS-related protein SEC 93.6 0.03 1E-06 54.5 2.7 23 542-564 5-27 (170)
319 2pbr_A DTMP kinase, thymidylat 93.6 0.036 1.2E-06 55.8 3.4 23 542-564 2-24 (195)
320 1c1y_A RAS-related protein RAP 93.6 0.033 1.1E-06 54.0 3.0 23 542-564 5-27 (167)
321 3tw8_B RAS-related protein RAB 93.6 0.03 1E-06 55.1 2.8 23 542-564 11-33 (181)
322 1ko7_A HPR kinase/phosphatase; 93.6 0.056 1.9E-06 60.7 5.3 36 527-563 132-167 (314)
323 1wms_A RAB-9, RAB9, RAS-relate 93.6 0.033 1.1E-06 54.8 3.1 23 542-564 9-31 (177)
324 1ky3_A GTP-binding protein YPT 93.6 0.034 1.2E-06 54.7 3.1 23 542-564 10-32 (182)
325 1jal_A YCHF protein; nucleotid 93.5 0.048 1.6E-06 62.4 4.6 38 540-577 2-48 (363)
326 4b4t_K 26S protease regulatory 93.5 0.33 1.1E-05 56.6 11.8 24 541-564 207-230 (428)
327 1zuh_A Shikimate kinase; alpha 93.5 0.04 1.4E-06 54.7 3.5 24 541-564 8-31 (168)
328 3a4m_A L-seryl-tRNA(SEC) kinas 93.5 0.042 1.4E-06 59.3 3.9 26 538-563 2-27 (260)
329 2fn4_A P23, RAS-related protei 93.5 0.033 1.1E-06 54.7 2.8 23 542-564 11-33 (181)
330 1svi_A GTP-binding protein YSX 93.4 0.032 1.1E-06 56.0 2.7 23 542-564 25-47 (195)
331 1e6c_A Shikimate kinase; phosp 93.4 0.034 1.2E-06 55.1 2.9 24 541-564 3-26 (173)
332 3dl0_A Adenylate kinase; phosp 93.4 0.039 1.3E-06 57.2 3.4 23 542-564 2-24 (216)
333 3clv_A RAB5 protein, putative; 93.4 0.036 1.2E-06 55.3 3.1 23 542-564 9-31 (208)
334 3lxw_A GTPase IMAP family memb 93.4 0.036 1.2E-06 59.4 3.3 24 542-565 23-46 (247)
335 2orv_A Thymidine kinase; TP4A 93.4 0.31 1E-05 52.5 10.4 53 670-728 89-150 (234)
336 1qf9_A UMP/CMP kinase, protein 93.4 0.041 1.4E-06 55.2 3.4 25 540-564 6-30 (194)
337 1ukz_A Uridylate kinase; trans 93.4 0.043 1.5E-06 56.2 3.6 26 539-564 14-39 (203)
338 4dsu_A GTPase KRAS, isoform 2B 93.4 0.037 1.3E-06 54.9 3.1 23 542-564 6-28 (189)
339 1zak_A Adenylate kinase; ATP:A 93.4 0.033 1.1E-06 58.1 2.8 26 539-564 4-29 (222)
340 1r2q_A RAS-related protein RAB 93.4 0.038 1.3E-06 53.6 3.0 22 542-563 8-29 (170)
341 2lkc_A Translation initiation 93.3 0.047 1.6E-06 53.7 3.7 26 539-564 7-32 (178)
342 2pt5_A Shikimate kinase, SK; a 93.3 0.044 1.5E-06 54.1 3.5 23 542-564 2-24 (168)
343 3pqc_A Probable GTP-binding pr 93.3 0.035 1.2E-06 55.4 2.7 23 542-564 25-47 (195)
344 2iyv_A Shikimate kinase, SK; t 93.3 0.035 1.2E-06 55.9 2.7 24 541-564 3-26 (184)
345 2hxs_A RAB-26, RAS-related pro 93.2 0.044 1.5E-06 53.9 3.3 23 542-564 8-30 (178)
346 3bc1_A RAS-related protein RAB 93.2 0.04 1.4E-06 54.7 3.0 23 542-564 13-35 (195)
347 1fzq_A ADP-ribosylation factor 93.2 0.033 1.1E-06 55.9 2.4 22 542-563 18-39 (181)
348 2cxx_A Probable GTP-binding pr 93.2 0.037 1.3E-06 55.1 2.7 22 543-564 4-25 (190)
349 1upt_A ARL1, ADP-ribosylation 93.2 0.042 1.4E-06 53.6 3.0 23 541-563 8-30 (171)
350 3dm5_A SRP54, signal recogniti 93.2 0.48 1.6E-05 55.6 12.4 27 539-565 99-125 (443)
351 3t1o_A Gliding protein MGLA; G 93.1 0.049 1.7E-06 54.4 3.4 24 542-565 16-39 (198)
352 2oil_A CATX-8, RAS-related pro 93.1 0.043 1.5E-06 55.2 3.1 23 542-564 27-49 (193)
353 4b4t_H 26S protease regulatory 93.1 0.23 8E-06 58.4 9.6 28 538-565 241-268 (467)
354 1r8s_A ADP-ribosylation factor 93.1 0.045 1.6E-06 53.1 3.0 21 543-563 3-23 (164)
355 3tlx_A Adenylate kinase 2; str 93.1 0.053 1.8E-06 58.0 3.8 26 539-564 28-53 (243)
356 3b1v_A Ferrous iron uptake tra 93.0 0.048 1.6E-06 59.7 3.5 23 542-564 5-27 (272)
357 1z0f_A RAB14, member RAS oncog 93.0 0.047 1.6E-06 53.6 3.0 23 542-564 17-39 (179)
358 2y8e_A RAB-protein 6, GH09086P 93.0 0.043 1.5E-06 53.8 2.7 23 542-564 16-38 (179)
359 2a9k_A RAS-related protein RAL 93.0 0.046 1.6E-06 54.0 3.0 23 542-564 20-42 (187)
360 2g6b_A RAS-related protein RAB 92.9 0.047 1.6E-06 53.8 3.0 23 542-564 12-34 (180)
361 2efe_B Small GTP-binding prote 92.9 0.05 1.7E-06 53.7 3.1 23 542-564 14-36 (181)
362 2j9r_A Thymidine kinase; TK1, 92.8 0.23 7.7E-06 52.9 8.2 52 671-727 101-161 (214)
363 1moz_A ARL1, ADP-ribosylation 92.8 0.031 1.1E-06 55.4 1.4 23 540-562 18-40 (183)
364 3con_A GTPase NRAS; structural 92.8 0.05 1.7E-06 54.4 3.0 23 542-564 23-45 (190)
365 2bov_A RAla, RAS-related prote 92.7 0.052 1.8E-06 54.9 3.0 23 542-564 16-38 (206)
366 1vg8_A RAS-related protein RAB 92.7 0.052 1.8E-06 55.0 3.1 23 542-564 10-32 (207)
367 1wf3_A GTP-binding protein; GT 92.7 0.056 1.9E-06 59.9 3.5 23 542-564 9-31 (301)
368 1uj2_A Uridine-cytidine kinase 92.7 0.058 2E-06 57.7 3.4 24 541-564 23-46 (252)
369 3umf_A Adenylate kinase; rossm 92.6 0.064 2.2E-06 57.0 3.7 27 538-564 27-53 (217)
370 1nrj_B SR-beta, signal recogni 92.6 0.054 1.8E-06 55.7 3.0 23 542-564 14-36 (218)
371 2bme_A RAB4A, RAS-related prot 92.6 0.051 1.7E-06 54.0 2.7 23 542-564 12-34 (186)
372 3iev_A GTP-binding protein ERA 92.6 0.058 2E-06 59.8 3.5 23 542-564 12-34 (308)
373 2gf0_A GTP-binding protein DI- 92.6 0.052 1.8E-06 54.5 2.8 22 542-563 10-31 (199)
374 1jbk_A CLPB protein; beta barr 92.6 0.07 2.4E-06 52.6 3.7 26 539-564 42-67 (195)
375 3t5d_A Septin-7; GTP-binding p 92.6 0.046 1.6E-06 59.3 2.5 23 542-564 10-32 (274)
376 3tkl_A RAS-related protein RAB 92.6 0.057 1.9E-06 54.1 3.0 23 542-564 18-40 (196)
377 2gf9_A RAS-related protein RAB 92.5 0.058 2E-06 54.1 3.0 23 542-564 24-46 (189)
378 2xb4_A Adenylate kinase; ATP-b 92.5 0.064 2.2E-06 56.3 3.5 23 542-564 2-24 (223)
379 3be4_A Adenylate kinase; malar 92.5 0.059 2E-06 56.2 3.1 26 539-564 4-29 (217)
380 1ksh_A ARF-like protein 2; sma 92.4 0.058 2E-06 53.8 2.9 25 540-564 18-42 (186)
381 3kkq_A RAS-related protein M-R 92.4 0.061 2.1E-06 53.4 3.0 23 542-564 20-42 (183)
382 2xtp_A GTPase IMAP family memb 92.4 0.057 1.9E-06 57.6 3.0 23 542-564 24-46 (260)
383 1mh1_A RAC1; GTP-binding, GTPa 92.4 0.062 2.1E-06 53.2 3.0 22 542-563 7-28 (186)
384 1m7b_A RND3/RHOE small GTP-bin 92.3 0.058 2E-06 54.0 2.7 23 542-564 9-31 (184)
385 1zbd_A Rabphilin-3A; G protein 92.3 0.067 2.3E-06 54.2 3.2 23 542-564 10-32 (203)
386 4fcw_A Chaperone protein CLPB; 92.3 0.071 2.4E-06 58.0 3.6 27 539-565 46-72 (311)
387 2grj_A Dephospho-COA kinase; T 92.3 0.072 2.5E-06 55.4 3.4 25 539-563 11-35 (192)
388 2fg5_A RAB-22B, RAS-related pr 92.3 0.06 2.1E-06 54.4 2.8 23 542-564 25-47 (192)
389 3iby_A Ferrous iron transport 92.2 0.061 2.1E-06 58.1 2.9 23 542-564 3-25 (256)
390 1z06_A RAS-related protein RAB 92.2 0.068 2.3E-06 53.6 3.1 23 542-564 22-44 (189)
391 3cbq_A GTP-binding protein REM 92.2 0.051 1.8E-06 55.5 2.2 22 542-563 25-46 (195)
392 1jwy_B Dynamin A GTPase domain 92.2 0.066 2.2E-06 58.7 3.2 23 542-564 26-48 (315)
393 1ltq_A Polynucleotide kinase; 92.2 0.076 2.6E-06 57.8 3.7 23 541-563 3-25 (301)
394 3oes_A GTPase rhebl1; small GT 92.1 0.062 2.1E-06 54.7 2.7 23 542-564 26-48 (201)
395 3t5g_A GTP-binding protein RHE 92.1 0.064 2.2E-06 53.1 2.7 22 542-563 8-29 (181)
396 1e4v_A Adenylate kinase; trans 92.1 0.071 2.4E-06 55.4 3.1 23 542-564 2-24 (214)
397 1x3s_A RAS-related protein RAB 92.1 0.071 2.4E-06 53.3 3.0 23 542-564 17-39 (195)
398 2dby_A GTP-binding protein; GD 92.1 0.064 2.2E-06 61.4 3.0 21 543-563 4-24 (368)
399 2wsm_A Hydrogenase expression/ 92.1 0.069 2.4E-06 55.1 3.0 24 541-564 31-54 (221)
400 2r8r_A Sensor protein; KDPD, P 92.1 0.065 2.2E-06 57.5 2.8 49 664-712 77-126 (228)
401 3bwd_D RAC-like GTP-binding pr 92.1 0.072 2.5E-06 52.6 3.0 23 542-564 10-32 (182)
402 3a8t_A Adenylate isopentenyltr 92.0 0.12 4.1E-06 58.6 5.1 27 539-565 39-65 (339)
403 2bcg_Y Protein YP2, GTP-bindin 92.0 0.065 2.2E-06 54.5 2.7 23 542-564 10-32 (206)
404 2a5j_A RAS-related protein RAB 92.0 0.073 2.5E-06 53.6 3.1 23 542-564 23-45 (191)
405 3dz8_A RAS-related protein RAB 92.0 0.067 2.3E-06 53.9 2.7 23 542-564 25-47 (191)
406 3v9p_A DTMP kinase, thymidylat 92.0 0.066 2.3E-06 57.2 2.8 29 537-565 22-50 (227)
407 1ak2_A Adenylate kinase isoenz 92.0 0.087 3E-06 55.6 3.7 26 539-564 15-40 (233)
408 2il1_A RAB12; G-protein, GDP, 92.0 0.067 2.3E-06 54.1 2.7 23 542-564 28-50 (192)
409 3cph_A RAS-related protein SEC 91.9 0.074 2.5E-06 54.1 3.0 23 542-564 22-44 (213)
410 1zd9_A ADP-ribosylation factor 91.9 0.075 2.6E-06 53.5 3.0 23 542-564 24-46 (188)
411 2f6r_A COA synthase, bifunctio 91.9 0.073 2.5E-06 58.3 3.2 23 540-562 75-97 (281)
412 4dhe_A Probable GTP-binding pr 91.9 0.041 1.4E-06 56.7 1.1 23 542-564 31-53 (223)
413 2cjw_A GTP-binding protein GEM 91.9 0.076 2.6E-06 54.1 3.0 22 542-563 8-29 (192)
414 1zj6_A ADP-ribosylation factor 91.9 0.075 2.6E-06 53.2 2.9 23 542-564 18-40 (187)
415 3reg_A RHO-like small GTPase; 91.9 0.077 2.6E-06 53.5 3.0 23 542-564 25-47 (194)
416 4bas_A ADP-ribosylation factor 91.9 0.072 2.5E-06 53.5 2.8 24 541-564 18-41 (199)
417 2atv_A RERG, RAS-like estrogen 91.9 0.078 2.7E-06 53.6 3.1 23 542-564 30-52 (196)
418 2o52_A RAS-related protein RAB 91.8 0.075 2.6E-06 54.2 3.0 23 542-564 27-49 (200)
419 2qmh_A HPR kinase/phosphorylas 91.8 0.13 4.5E-06 54.2 4.8 36 528-564 23-58 (205)
420 2f7s_A C25KG, RAS-related prot 91.8 0.084 2.9E-06 54.2 3.3 23 542-564 27-49 (217)
421 2zts_A Putative uncharacterize 91.8 0.11 3.6E-06 54.4 4.1 45 669-713 133-182 (251)
422 2p5s_A RAS and EF-hand domain 91.8 0.08 2.7E-06 53.8 3.1 23 542-564 30-52 (199)
423 2h57_A ADP-ribosylation factor 91.8 0.059 2E-06 54.1 2.0 23 542-564 23-45 (190)
424 3a1s_A Iron(II) transport prot 91.7 0.082 2.8E-06 57.1 3.3 23 542-564 7-29 (258)
425 2qu8_A Putative nucleolar GTP- 91.7 0.077 2.6E-06 55.4 2.9 22 542-563 31-52 (228)
426 3sr0_A Adenylate kinase; phosp 91.7 0.09 3.1E-06 55.2 3.4 23 542-564 2-24 (206)
427 2h17_A ADP-ribosylation factor 91.7 0.07 2.4E-06 53.2 2.5 23 542-564 23-45 (181)
428 3i8s_A Ferrous iron transport 91.7 0.078 2.7E-06 57.7 3.0 23 542-564 5-27 (274)
429 2aka_B Dynamin-1; fusion prote 91.6 0.072 2.5E-06 57.7 2.7 23 542-564 28-50 (299)
430 2iwr_A Centaurin gamma 1; ANK 91.6 0.068 2.3E-06 52.8 2.3 23 542-564 9-31 (178)
431 3llu_A RAS-related GTP-binding 91.6 0.082 2.8E-06 53.7 2.9 24 542-565 22-45 (196)
432 2q3h_A RAS homolog gene family 91.5 0.094 3.2E-06 53.0 3.2 23 542-564 22-44 (201)
433 4edh_A DTMP kinase, thymidylat 91.5 0.11 3.8E-06 54.8 3.8 28 538-565 4-31 (213)
434 2fv8_A H6, RHO-related GTP-bin 91.5 0.082 2.8E-06 54.1 2.8 23 542-564 27-49 (207)
435 3zvl_A Bifunctional polynucleo 91.5 0.088 3E-06 60.9 3.3 27 538-564 256-282 (416)
436 2ew1_A RAS-related protein RAB 91.4 0.082 2.8E-06 54.4 2.7 23 542-564 28-50 (201)
437 2p65_A Hypothetical protein PF 91.4 0.09 3.1E-06 51.9 2.9 25 540-564 43-67 (187)
438 3tqf_A HPR(Ser) kinase; transf 91.4 0.19 6.4E-06 52.0 5.3 35 527-562 4-38 (181)
439 1a7j_A Phosphoribulokinase; tr 91.4 0.054 1.9E-06 59.8 1.4 26 539-564 4-29 (290)
440 3c5c_A RAS-like protein 12; GD 91.3 0.096 3.3E-06 52.8 3.1 23 542-564 23-45 (187)
441 2fu5_C RAS-related protein RAB 91.2 0.064 2.2E-06 53.2 1.6 22 542-563 10-31 (183)
442 2fh5_B SR-beta, signal recogni 91.2 0.098 3.3E-06 53.6 3.0 23 542-564 9-31 (214)
443 2j1l_A RHO-related GTP-binding 91.2 0.096 3.3E-06 54.1 3.0 22 542-563 36-57 (214)
444 1gwn_A RHO-related GTP-binding 91.1 0.093 3.2E-06 54.1 2.7 23 542-564 30-52 (205)
445 3cmu_A Protein RECA, recombina 91.1 0.25 8.4E-06 67.3 7.4 36 529-564 719-756 (2050)
446 1njg_A DNA polymerase III subu 91.0 0.12 4E-06 52.7 3.4 43 670-714 125-167 (250)
447 2gco_A H9, RHO-related GTP-bin 91.0 0.097 3.3E-06 53.3 2.7 23 542-564 27-49 (201)
448 2h92_A Cytidylate kinase; ross 90.9 0.09 3.1E-06 54.4 2.4 25 540-564 3-27 (219)
449 2b6h_A ADP-ribosylation factor 90.8 0.094 3.2E-06 53.2 2.4 22 542-563 31-52 (192)
450 3def_A T7I23.11 protein; chlor 90.7 0.11 3.7E-06 55.9 3.0 23 542-564 38-60 (262)
451 2atx_A Small GTP binding prote 90.7 0.11 3.8E-06 52.2 2.8 23 542-564 20-42 (194)
452 3lv8_A DTMP kinase, thymidylat 90.6 0.13 4.3E-06 55.4 3.4 27 539-565 26-52 (236)
453 1h65_A Chloroplast outer envel 90.6 0.11 3.8E-06 56.0 2.9 23 542-564 41-63 (270)
454 2ocp_A DGK, deoxyguanosine kin 90.6 0.14 4.8E-06 54.2 3.6 26 540-565 2-27 (241)
455 3d3q_A TRNA delta(2)-isopenten 90.5 0.13 4.5E-06 58.3 3.4 25 541-565 8-32 (340)
456 1p5z_B DCK, deoxycytidine kina 90.5 0.094 3.2E-06 56.3 2.2 28 538-565 22-49 (263)
457 3cpj_B GTP-binding protein YPT 90.4 0.13 4.4E-06 53.3 3.1 23 542-564 15-37 (223)
458 4djt_A GTP-binding nuclear pro 90.4 0.061 2.1E-06 55.2 0.6 23 542-564 13-35 (218)
459 2hf9_A Probable hydrogenase ni 90.3 0.13 4.4E-06 53.2 3.0 23 542-564 40-62 (226)
460 3tmk_A Thymidylate kinase; pho 90.2 0.15 5.1E-06 54.1 3.4 28 538-565 3-30 (216)
461 2hup_A RAS-related protein RAB 90.2 0.13 4.4E-06 52.6 2.8 23 542-564 31-53 (201)
462 2g3y_A GTP-binding protein GEM 90.2 0.15 5E-06 53.5 3.3 23 542-564 39-61 (211)
463 4tmk_A Protein (thymidylate ki 90.2 0.15 5.2E-06 53.8 3.4 27 539-565 2-28 (213)
464 2yc2_C IFT27, small RAB-relate 90.1 0.064 2.2E-06 54.2 0.4 22 542-563 22-43 (208)
465 3exa_A TRNA delta(2)-isopenten 90.0 0.19 6.4E-06 56.5 4.1 26 540-565 3-28 (322)
466 2x77_A ADP-ribosylation factor 90.0 0.092 3.1E-06 52.6 1.4 22 542-563 24-45 (189)
467 3ld9_A DTMP kinase, thymidylat 89.9 0.19 6.4E-06 53.7 3.8 28 538-565 19-46 (223)
468 3cnl_A YLQF, putative uncharac 89.8 0.16 5.6E-06 55.2 3.4 25 541-565 100-124 (262)
469 4gzl_A RAS-related C3 botulinu 89.8 0.14 4.9E-06 52.4 2.7 22 542-563 32-53 (204)
470 1sky_E F1-ATPase, F1-ATP synth 89.8 0.18 6.2E-06 59.5 3.9 35 529-564 141-175 (473)
471 2j0v_A RAC-like GTP-binding pr 89.7 0.14 4.9E-06 52.2 2.7 23 542-564 11-33 (212)
472 3crm_A TRNA delta(2)-isopenten 89.7 0.17 5.7E-06 57.0 3.5 25 541-565 6-30 (323)
473 1sxj_D Activator 1 41 kDa subu 89.7 0.047 1.6E-06 60.4 -1.1 42 671-714 133-174 (353)
474 3q3j_B RHO-related GTP-binding 89.5 0.17 5.7E-06 52.4 3.0 23 542-564 29-51 (214)
475 2orw_A Thymidine kinase; TMTK, 88.9 0.22 7.4E-06 51.2 3.4 39 671-714 76-114 (184)
476 3gmt_A Adenylate kinase; ssgci 88.7 0.21 7.3E-06 53.6 3.2 24 541-564 9-32 (230)
477 2chg_A Replication factor C sm 88.6 0.22 7.6E-06 50.1 3.2 22 543-564 41-62 (226)
478 3foz_A TRNA delta(2)-isopenten 88.4 0.27 9.1E-06 55.2 3.9 26 540-565 10-35 (316)
479 3n70_A Transport activator; si 88.4 0.25 8.4E-06 48.3 3.2 26 540-565 24-49 (145)
480 3syl_A Protein CBBX; photosynt 88.3 0.24 8.3E-06 53.8 3.4 26 539-564 66-91 (309)
481 1ypw_A Transitional endoplasmi 88.2 0.081 2.8E-06 66.4 -0.5 32 534-565 505-536 (806)
482 2vhj_A Ntpase P4, P4; non- hyd 88.1 0.26 8.9E-06 55.6 3.6 28 535-562 118-145 (331)
483 3p32_A Probable GTPase RV1496/ 87.9 0.29 9.8E-06 55.3 3.8 25 540-564 79-103 (355)
484 3eph_A TRNA isopentenyltransfe 87.8 0.27 9.3E-06 57.0 3.5 26 540-565 2-27 (409)
485 2hjg_A GTP-binding protein ENG 87.8 0.22 7.6E-06 57.8 2.8 23 542-564 5-27 (436)
486 1puj_A YLQF, conserved hypothe 87.8 0.29 9.8E-06 53.8 3.6 25 540-564 120-144 (282)
487 2x2e_A Dynamin-1; nitration, h 87.7 0.16 5.6E-06 57.1 1.7 23 542-564 33-55 (353)
488 1wxq_A GTP-binding protein; st 87.7 0.24 8.1E-06 57.2 3.0 79 628-722 181-262 (397)
489 2r62_A Cell division protease 87.7 0.13 4.5E-06 54.9 0.8 22 543-564 47-68 (268)
490 3th5_A RAS-related C3 botulinu 87.5 0.11 3.6E-06 53.0 0.0 21 542-562 32-52 (204)
491 3gj0_A GTP-binding nuclear pro 87.2 0.2 6.7E-06 51.7 1.8 22 542-563 17-39 (221)
492 1d2n_A N-ethylmaleimide-sensit 87.1 0.33 1.1E-05 52.1 3.5 25 540-564 64-88 (272)
493 1f5n_A Interferon-induced guan 87.0 0.24 8.3E-06 60.1 2.7 34 529-565 30-63 (592)
494 3uk6_A RUVB-like 2; hexameric 87.0 0.31 1.1E-05 54.3 3.4 27 539-565 69-95 (368)
495 3r7w_A Gtpase1, GTP-binding pr 86.9 0.34 1.2E-05 53.5 3.6 24 541-564 4-27 (307)
496 3l0i_B RAS-related protein RAB 86.7 0.075 2.6E-06 54.0 -1.8 23 542-564 35-57 (199)
497 3euj_A Chromosome partition pr 86.6 0.79 2.7E-05 54.3 6.7 70 652-728 378-464 (483)
498 1ofh_A ATP-dependent HSL prote 86.6 0.32 1.1E-05 52.4 3.1 26 540-565 50-75 (310)
499 3ec1_A YQEH GTPase; atnos1, at 86.5 0.3 1E-05 55.7 2.9 25 539-563 161-185 (369)
500 2qpt_A EH domain-containing pr 86.5 0.29 1E-05 58.8 3.0 24 541-564 66-89 (550)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=3.5e-46 Score=425.65 Aligned_cols=220 Identities=24% Similarity=0.384 Sum_probs=197.2
Q ss_pred EEEEEeEEEEEcCC--cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh------h
Q 048718 512 EVAFKDLTITLKGK--NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI------Q 583 (1118)
Q Consensus 512 ~l~~knLs~~~~~~--~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------~ 583 (1118)
.|+++||+++|..+ ..++|+||||+|++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. .
T Consensus 24 mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~i~~~~~~~~~ 101 (366)
T 3tui_C 24 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELTTLSESELT 101 (366)
T ss_dssp CEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECSSCCHHHHH
T ss_pred eEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHH
Confidence 58999999999642 3579999999999999999999999999999999999998 689999999998642 1
Q ss_pred hhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 048718 584 SYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVN 663 (1118)
Q Consensus 584 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVs 663 (1118)
.+|+.||||||++.+++.+||+||+.|++..+ ..++.+.+++++++|+.+||.+..++++++ |||||||||+
T Consensus 102 ~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~-----LSGGqkQRVa 173 (366)
T 3tui_C 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPSN-----LSGGQKQRVA 173 (366)
T ss_dssp HHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCCTTT-----SCHHHHHHHH
T ss_pred HHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChhh-----CCHHHHHHHH
Confidence 34678999999999999999999999987653 345666777899999999999999988876 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 664 VGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 664 IArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
|||||+.+|+||||||||+|||+.++..+++.|+++++ .|+|||+|||+++. +.+++|++++|.+ |++++.|+++++
T Consensus 174 IArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~-~~~~aDrv~vl~~-G~iv~~g~~~ev 251 (366)
T 3tui_C 174 IARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDV-VKRICDCVAVISN-GELIEQDTVSEV 251 (366)
T ss_dssp HHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHH-HHHHCSEEEEEET-TEEEECCBHHHH
T ss_pred HHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEEEEEC-CEEEEEcCHHHH
Confidence 99999999999999999999999999999999999975 49999999999975 4678999999976 699999999876
Q ss_pred H
Q 048718 743 E 743 (1118)
Q Consensus 743 ~ 743 (1118)
.
T Consensus 252 ~ 252 (366)
T 3tui_C 252 F 252 (366)
T ss_dssp H
T ss_pred H
Confidence 3
No 2
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=3.3e-46 Score=403.03 Aligned_cols=220 Identities=23% Similarity=0.335 Sum_probs=189.5
Q ss_pred EEEEeEEEEEcCCc--ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hh---
Q 048718 513 VAFKDLTITLKGKN--KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QS--- 584 (1118)
Q Consensus 513 l~~knLs~~~~~~~--k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~--- 584 (1118)
|+++||+++|+++. +++|+||||+|++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. ..
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~ 79 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTNDLDDDELTK 79 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHHHH
Confidence 68999999996332 469999999999999999999999999999999999998 689999999988642 11
Q ss_pred -hcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHH
Q 048718 585 -YKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHI-RDSLVGTVEKRGISGGQRKRV 662 (1118)
Q Consensus 585 -~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~-~dt~vg~~~~rgLSGGERQRV 662 (1118)
.++.||||||++.+++.+||+||+.++...+........+..+++.++++.+||.+. .++++.+ |||||||||
T Consensus 80 ~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGq~QRv 154 (235)
T 3tif_A 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQ-----LSGGQQQRV 154 (235)
T ss_dssp HHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGG-----SCHHHHHHH
T ss_pred HhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhh-----CCHHHHHHH
Confidence 234699999999999999999999998764322234555666778999999999875 4777766 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhh
Q 048718 663 NVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKK 741 (1118)
Q Consensus 663 sIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~ 741 (1118)
+|||||+.+|+||||||||+|||+.++.++++.|++++++ |+|||++||+++. .+++|++++|.+ |++++.+++++
T Consensus 155 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~--~~~~d~i~~l~~-G~i~~~~~~~~ 231 (235)
T 3tif_A 155 AIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV--ARFGERIIYLKD-GEVEREEKLRG 231 (235)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHH--HTTSSEEEEEET-TEEEEEEECC-
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHH--HHhCCEEEEEEC-CEEEEEcChhh
Confidence 9999999999999999999999999999999999999865 9999999999863 478999999976 69999998776
Q ss_pred H
Q 048718 742 V 742 (1118)
Q Consensus 742 l 742 (1118)
+
T Consensus 232 ~ 232 (235)
T 3tif_A 232 F 232 (235)
T ss_dssp -
T ss_pred h
Confidence 4
No 3
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=6.2e-46 Score=410.01 Aligned_cols=219 Identities=27% Similarity=0.433 Sum_probs=193.5
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC--h---hhhc
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS--I---QSYK 586 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~--~---~~~r 586 (1118)
.|+++||+++|++ .+.+|+||||+|++||+++|+||||||||||||+|+|+++ |++|+|.++|+++. . ..++
T Consensus 7 ~l~i~~ls~~y~~-~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i~~~~~~~~~~~ 83 (275)
T 3gfo_A 7 ILKVEELNYNYSD-GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPIDYSRKGIMKLR 83 (275)
T ss_dssp EEEEEEEEEECTT-SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCCSHHHHHHHH
T ss_pred EEEEEEEEEEECC-CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEECCcccccHHHHh
Confidence 5899999999953 3569999999999999999999999999999999999998 68999999999873 1 2456
Q ss_pred CeEEEEcCCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 048718 587 RIIGFVPQDDI-VHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVG 665 (1118)
Q Consensus 587 ~~IgyV~Qd~~-l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIA 665 (1118)
+.||||||++. .+..+||+||+.|+.... ..+..+..++++++++.+||.+..++++++ |||||||||+||
T Consensus 84 ~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----LSgGqkQRv~iA 155 (275)
T 3gfo_A 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPTHC-----LSFGQKKRVAIA 155 (275)
T ss_dssp HSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBGGG-----SCHHHHHHHHHH
T ss_pred CcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCccc-----CCHHHHHHHHHH
Confidence 78999999973 344789999999987642 345666677899999999999999988876 999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 666 LEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREA-LEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 666 rALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la-~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
|||+.+|+||||||||+|||+.++..+++.|++++ ++|+|||++||+++. +.+++|++++|.+ |++++.|+++++.
T Consensus 156 raL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~-~~~~~drv~~l~~-G~i~~~g~~~~~~ 232 (275)
T 3gfo_A 156 GVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI-VPLYCDNVFVMKE-GRVILQGNPKEVF 232 (275)
T ss_dssp HHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSS-GGGGCSEEEEEET-TEEEEEECHHHHT
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHH-HHHhCCEEEEEEC-CEEEEECCHHHHh
Confidence 99999999999999999999999999999999997 569999999999986 4578999999976 6999999998863
No 4
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=7.3e-46 Score=425.33 Aligned_cols=218 Identities=28% Similarity=0.402 Sum_probs=197.7
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-hhhcCeEE
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-QSYKRIIG 590 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Ig 590 (1118)
.|+++||+++|. ++.+|+||||+|++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. ...++.||
T Consensus 3 ~l~~~~l~~~yg--~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~~~~~~~~r~ig 78 (381)
T 3rlf_A 3 SVQLQNVTKAWG--EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGVG 78 (381)
T ss_dssp CEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCGGGSCEE
T ss_pred EEEEEeEEEEEC--CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEECCCCCHHHCCEE
Confidence 488999999994 5789999999999999999999999999999999999998 689999999998743 23457799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
||||++.+||++||+|||.|+++.+ ..++.+.+++++++++.+||.+..++++.+ |||||||||+|||||+.
T Consensus 79 ~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~-----LSGGqrQRVaiArAL~~ 150 (381)
T 3rlf_A 79 MVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVA 150 (381)
T ss_dssp EECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCGGG-----SCHHHHHHHHHHHHHHH
T ss_pred EEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhH-----CCHHHHHHHHHHHHHHc
Confidence 9999999999999999999998654 356667778899999999999999988876 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
+|+||||||||++||+..+.++.+.|+++.++ |+|+|++|||+++ +..++|++++|.+ |+++..|+++++.
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~e-a~~~aDri~vl~~-G~i~~~g~~~~l~ 222 (381)
T 3rlf_A 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVE-AMTLADKIVVLDA-GRVAQVGKPLELY 222 (381)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHH-HHHHCSEEEEEET-TEEEEEECHHHHH
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHH-HHHhCCEEEEEEC-CEEEEEeCHHHHH
Confidence 99999999999999999999999999999765 9999999999976 4689999999976 6999999998873
No 5
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=3.3e-46 Score=425.36 Aligned_cols=218 Identities=23% Similarity=0.389 Sum_probs=194.0
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEec----Ch-hhhc
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVA----SI-QSYK 586 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~----~~-~~~r 586 (1118)
.|+++||+++|. ++.+|+||||+|++||+++|+||||||||||||+|+|+++ |++|+|.++|+++ .. ...+
T Consensus 4 ~l~i~~ls~~y~--~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i~~~~~~~~~~~ 79 (359)
T 3fvq_A 4 ALHIGHLSKSFQ--NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTIFSKNTNLPVRE 79 (359)
T ss_dssp CEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEESSSCBCCGGG
T ss_pred EEEEEeEEEEEC--CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEECcccccccchhh
Confidence 488999999994 5789999999999999999999999999999999999998 6899999999876 21 2346
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 048718 587 RIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGL 666 (1118)
Q Consensus 587 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIAr 666 (1118)
+.||||||++.+||++||+|||.|++..+ ..++.+.+++++++++.+||.+..++++++ |||||||||+|||
T Consensus 80 r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~-----LSGGq~QRValAr 151 (359)
T 3fvq_A 80 RRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYPHE-----LSGGQQQRAALAR 151 (359)
T ss_dssp SCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCGGG-----SCHHHHHHHHHHH
T ss_pred CCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCChhh-----CCHHHHHHHHHHH
Confidence 78999999999999999999999986543 234455567899999999999999998876 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 667 EMVMEPSLLILDEPTSGLDSSSSQLLLRALRREA-LEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 667 ALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la-~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
||+.+|+||||||||+|||+..+.++.+.|+++. +.|+|+|++|||.++ +..++|++++|.+ |+++..|+++++.
T Consensus 152 AL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~e-a~~~aDri~vl~~-G~i~~~g~~~el~ 227 (359)
T 3fvq_A 152 ALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREE-ALQYADRIAVMKQ-GRILQTASPHELY 227 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHH-HHHHCSEEEEEET-TEEEEEECHHHHH
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHHCCEEEEEEC-CEEEEEeCHHHHH
Confidence 9999999999999999999999999999887775 569999999999976 4589999999976 6999999998874
No 6
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.3e-45 Score=405.01 Aligned_cols=218 Identities=24% Similarity=0.448 Sum_probs=192.5
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC-----hhhhc
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS-----IQSYK 586 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~-----~~~~r 586 (1118)
.|+++||++.|. ++++|+||||+|++||+++|+||||||||||||+|+|+++ |++|+|.++|+++. ...++
T Consensus 24 ~l~i~~l~~~y~--~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~ 99 (263)
T 2olj_A 24 MIDVHQLKKSFG--SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAKDTNLNKVR 99 (263)
T ss_dssp SEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEESSSTTCCHHHHH
T ss_pred eEEEEeEEEEEC--CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEECCCccccHHHHh
Confidence 489999999994 4679999999999999999999999999999999999998 68999999998863 12346
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHH-hhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 048718 587 RIIGFVPQDDIVHGNLTVEENLWFSA-RCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVG 665 (1118)
Q Consensus 587 ~~IgyV~Qd~~l~~~LTV~EnL~f~a-~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIA 665 (1118)
+.||||||++.+++.+||+||+.|+. ... .....+..++++++++.+||.+..++++++ |||||||||+||
T Consensus 100 ~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----LSgGqkQRv~lA 171 (263)
T 2olj_A 100 EEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYPDS-----LSGGQAQRVAIA 171 (263)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCGGG-----SCHHHHHHHHHH
T ss_pred CcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCChhh-----CCHHHHHHHHHH
Confidence 67999999999999999999999964 322 234444556789999999999988888876 999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 666 LEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 666 rALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
|||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++. +.+++|++++|.+ |++++.|+++++.
T Consensus 172 raL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~-~~~~~d~v~~l~~-G~i~~~g~~~~~~ 247 (263)
T 2olj_A 172 RALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGF-AREVGDRVLFMDG-GYIIEEGKPEDLF 247 (263)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-HHHHCSEEEEEET-TEEEEEECHHHHH
T ss_pred HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH-HHHhCCEEEEEEC-CEEEEECCHHHHH
Confidence 99999999999999999999999999999999998779999999999875 4578999999976 6999999988764
No 7
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-45 Score=405.00 Aligned_cols=218 Identities=26% Similarity=0.397 Sum_probs=192.4
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---------
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI--------- 582 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--------- 582 (1118)
.|+++||+++|. ++++|+||||+|++||+++|+||||||||||||+|+|+++ |++|+|.++|+++..
T Consensus 6 ~l~i~~l~~~y~--~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~ 81 (262)
T 1b0u_A 6 KLHVIDLHKRYG--GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDKDGQLK 81 (262)
T ss_dssp CEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCEEECTTSSEE
T ss_pred eEEEeeEEEEEC--CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccccccccccc
Confidence 489999999994 4679999999999999999999999999999999999998 689999999988641
Q ss_pred -------hhhcCeEEEEcCCCCCCCCCCHHHHHHHHH-hhccCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCCC
Q 048718 583 -------QSYKRIIGFVPQDDIVHGNLTVEENLWFSA-RCRLSADLPKAEKVLVVERVIESLGLQHI-RDSLVGTVEKRG 653 (1118)
Q Consensus 583 -------~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a-~lr~~~~~~~~~~~~~v~~lL~~lgL~~~-~dt~vg~~~~rg 653 (1118)
..+++.||||||++.+++.+||+||+.++. ..+ .....+.+++++++++.+||.+. .++++++
T Consensus 82 ~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~----- 153 (262)
T 1b0u_A 82 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQGKYPVH----- 153 (262)
T ss_dssp ESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHTSCGGG-----
T ss_pred ccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhcCCccc-----
Confidence 234667999999999999999999999964 322 23444455678999999999988 8888876
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEE
Q 048718 654 ISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVI 733 (1118)
Q Consensus 654 LSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~i 733 (1118)
|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++. +.+++|++++|.+ |++
T Consensus 154 LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~-~~~~~d~v~~l~~-G~i 231 (262)
T 1b0u_A 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF-ARHVSSHVIFLHQ-GKI 231 (262)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHH-HHHHCSEEEEEET-TEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999998779999999999875 4578999999976 699
Q ss_pred EEecChhhHH
Q 048718 734 VYHGPVKKVE 743 (1118)
Q Consensus 734 v~~G~~~~l~ 743 (1118)
++.|+++++.
T Consensus 232 ~~~g~~~~~~ 241 (262)
T 1b0u_A 232 EEEGDPEQVF 241 (262)
T ss_dssp EEEECHHHHH
T ss_pred EEeCCHHHHH
Confidence 9999988763
No 8
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2.3e-45 Score=393.51 Aligned_cols=212 Identities=24% Similarity=0.340 Sum_probs=187.4
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---h---hh
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---Q---SY 585 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~---~~ 585 (1118)
.++++||+++|. ++++|+||||+|++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. . .+
T Consensus 4 ~l~~~~l~~~y~--~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~ 79 (224)
T 2pcj_A 4 ILRAENIKKVIR--GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEVDYTNEKELSLL 79 (224)
T ss_dssp EEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEECCSSCHHHHHHH
T ss_pred EEEEEeEEEEEC--CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCCCCHHHHHHH
Confidence 488999999994 4679999999999999999999999999999999999998 689999999988642 1 22
Q ss_pred c-CeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 048718 586 K-RIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNV 664 (1118)
Q Consensus 586 r-~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsI 664 (1118)
+ +.|+||||++.+++.+||+||+.++...+ .....+..++++++++.+||.+..++++++ |||||||||+|
T Consensus 80 ~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~qrv~l 151 (224)
T 2pcj_A 80 RNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKPYE-----LSGGEQQRVAI 151 (224)
T ss_dssp HHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGGG-----SCHHHHHHHHH
T ss_pred HhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHHHH
Confidence 3 67999999999999999999999976543 233444456789999999999988888876 99999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecC
Q 048718 665 GLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGP 738 (1118)
Q Consensus 665 ArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~ 738 (1118)
||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++. + +.+|++++|.+ |++++.|+
T Consensus 152 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~-~-~~~d~v~~l~~-G~i~~~g~ 222 (224)
T 2pcj_A 152 ARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL-A-ELTHRTLEMKD-GKVVGEIT 222 (224)
T ss_dssp HHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-H-TTSSEEEEEET-TEEEEEEE
T ss_pred HHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH-H-HhCCEEEEEEC-CEEEEEee
Confidence 999999999999999999999999999999999998779999999999764 4 78999999976 68999885
No 9
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.1e-45 Score=399.57 Aligned_cols=220 Identities=29% Similarity=0.417 Sum_probs=194.1
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh--hhhcCe
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI--QSYKRI 588 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~ 588 (1118)
..|+++||++.|. ++.+|+||||+|++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. ..+++.
T Consensus 14 ~~l~i~~l~~~y~--~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~ 89 (256)
T 1vpl_A 14 GAVVVKDLRKRIG--KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVVEEPHEVRKL 89 (256)
T ss_dssp CCEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTCHHHHHTT
T ss_pred CeEEEEEEEEEEC--CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCccHHHHhhc
Confidence 4589999999994 4689999999999999999999999999999999999998 689999999988642 345678
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 048718 589 IGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEM 668 (1118)
Q Consensus 589 IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArAL 668 (1118)
||||||++.+++.+||+||+.++...+ .....+..++++++++.+||.+..++++++ |||||||||+|||||
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----LSgGq~qRv~lAraL 161 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVST-----YSKGMVRKLLIARAL 161 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBGGG-----CCHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCChhh-----CCHHHHHHHHHHHHH
Confidence 999999999999999999999976433 223444456788999999999988888876 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHHH
Q 048718 669 VMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVEE 744 (1118)
Q Consensus 669 l~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~~ 744 (1118)
+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++. +..++|++++|.+ |++++.|+++++.+
T Consensus 162 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~-~~~~~d~v~~l~~-G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 162 MVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLE-VEFLCDRIALIHN-GTIVETGTVEELKE 235 (256)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHH-HTTTCSEEEEEET-TEEEEEEEHHHHHH
T ss_pred HcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH-HHHHCCEEEEEEC-CEEEEecCHHHHHH
Confidence 99999999999999999999999999999998779999999999875 4578999999976 68999999887753
No 10
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2.7e-45 Score=400.75 Aligned_cols=219 Identities=22% Similarity=0.367 Sum_probs=190.5
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh----hhhcC
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI----QSYKR 587 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r~ 587 (1118)
.|+++||+++|. ++++|+||||+|++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. ...++
T Consensus 7 ~l~i~~l~~~y~--~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~ 82 (257)
T 1g6h_A 7 ILRTENIVKYFG--EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDITNKEPAELYHY 82 (257)
T ss_dssp EEEEEEEEEEET--TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHH
T ss_pred EEEEeeeEEEEC--CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHhC
Confidence 589999999994 4679999999999999999999999999999999999998 689999999998642 12456
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhh-ccCC---------CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARC-RLSA---------DLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGG 657 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~l-r~~~---------~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGG 657 (1118)
.||||||++.+++.+||+||+.++... .... .....+.+++++++++.+||.+..++++++ ||||
T Consensus 83 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG 157 (257)
T 1g6h_A 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE-----LSGG 157 (257)
T ss_dssp TEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGG-----SCHH
T ss_pred CEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchh-----CCHH
Confidence 799999999999999999999987532 1000 012233446789999999999988888876 9999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEec
Q 048718 658 QRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHG 737 (1118)
Q Consensus 658 ERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G 737 (1118)
|||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++. +.+++|++++|.+ |++++.|
T Consensus 158 qkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~-~~~~~d~v~~l~~-G~i~~~g 235 (257)
T 1g6h_A 158 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFN-GQIIAEG 235 (257)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCST-TGGGCSEEEEEET-TEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEEEEC-CEEEEEe
Confidence 9999999999999999999999999999999999999999998779999999999986 4578999999976 6899999
Q ss_pred Chhh
Q 048718 738 PVKK 741 (1118)
Q Consensus 738 ~~~~ 741 (1118)
++++
T Consensus 236 ~~~~ 239 (257)
T 1g6h_A 236 RGEE 239 (257)
T ss_dssp ESHH
T ss_pred CHHH
Confidence 9887
No 11
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=6.3e-45 Score=414.71 Aligned_cols=220 Identities=25% Similarity=0.410 Sum_probs=196.4
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-hhhcCeE
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-QSYKRII 589 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~I 589 (1118)
..|+++||+++|+ +++++|+||||+|++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. ...++.|
T Consensus 13 ~~l~~~~l~~~y~-g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~i 89 (355)
T 1z47_A 13 MTIEFVGVEKIYP-GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRVTDLPPQKRNV 89 (355)
T ss_dssp EEEEEEEEEECCT-TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCGGGSSE
T ss_pred ceEEEEEEEEEEc-CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECCcCChhhCcE
Confidence 4689999999993 23579999999999999999999999999999999999998 689999999998742 2346789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 048718 590 GFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMV 669 (1118)
Q Consensus 590 gyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl 669 (1118)
|||||++.+|+++||+||+.|++..+ ..++.+.+++++++++.+||.+..++++++ |||||||||+|||||+
T Consensus 90 g~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~-----LSGGq~QRvalArAL~ 161 (355)
T 1z47_A 90 GLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFPHE-----LSGGQQQRVALARALA 161 (355)
T ss_dssp EEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCGGG-----SCHHHHHHHHHHHHHT
T ss_pred EEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCccc-----CCHHHHHHHHHHHHHH
Confidence 99999999999999999999987643 345555667899999999999999988876 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 670 MEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 670 ~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
.+|+||||||||+|||+.++.++.+.|+++.++ |+|+|++|||+++ +..++|++++|.+ |+++..|+++++.
T Consensus 162 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~-a~~~adri~vl~~-G~i~~~g~~~~l~ 234 (355)
T 1z47_A 162 PRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEE-ALEVADRVLVLHE-GNVEQFGTPEEVY 234 (355)
T ss_dssp TCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHH-HHHHCSEEEEEET-TEEEEEECHHHHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHH-HHHhCCEEEEEEC-CEEEEEcCHHHHH
Confidence 999999999999999999999999999999765 9999999999876 4578999999976 6999999998873
No 12
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=6.7e-45 Score=415.61 Aligned_cols=218 Identities=28% Similarity=0.413 Sum_probs=195.0
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-hhhcCeEE
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-QSYKRIIG 590 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Ig 590 (1118)
.|+++||+++|. ++++|+||||+|++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. ...++.||
T Consensus 3 ~l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig 78 (362)
T 2it1_A 3 EIKLENIVKKFG--NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVTELPPKDRNVG 78 (362)
T ss_dssp CEEEEEEEEESS--SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGTTEE
T ss_pred EEEEEeEEEEEC--CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCCHhHCcEE
Confidence 378999999993 4679999999999999999999999999999999999998 689999999998743 23457799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
||||++.+|+++||+||+.|+++.+ ..++.+.+++++++++.+||.+..++++++ |||||||||+|||||+.
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~-----LSGGq~QRvalArAL~~ 150 (362)
T 2it1_A 79 LVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYPWQ-----LSGGQQQRVAIARALVK 150 (362)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGGG-----SCHHHHHHHHHHHHHTT
T ss_pred EEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCChhh-----CCHHHHHHHHHHHHHHc
Confidence 9999999999999999999987643 234555667899999999999999988876 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
+|+||||||||+|||+.++.++.+.|+++.++ |+|+|++|||.++ +..++|++++|.+ |++++.|+++++.
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~-a~~~adri~vl~~-G~i~~~g~~~~~~ 222 (362)
T 2it1_A 151 EPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAE-ALAMADRIAVIRE-GEILQVGTPDEVY 222 (362)
T ss_dssp CCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH-HHHHCSEEEEEET-TEEEEEECHHHHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHH-HHHhCCEEEEEEC-CEEEEEcCHHHHH
Confidence 99999999999999999999999999999754 9999999999875 4589999999976 6999999998873
No 13
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=9.5e-45 Score=416.01 Aligned_cols=218 Identities=28% Similarity=0.403 Sum_probs=194.9
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-------hh
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-------QS 584 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-------~~ 584 (1118)
.|+++||+++|. ++++|+||||+|++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. ..
T Consensus 3 ~l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~~~~~~~ 78 (372)
T 1g29_1 3 GVRLVDVWKVFG--EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVADPEKGIFVPP 78 (372)
T ss_dssp EEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEEEGGGTEECCG
T ss_pred EEEEEeEEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECccccccccCCH
Confidence 488999999994 4679999999999999999999999999999999999998 689999999987532 22
Q ss_pred hcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 048718 585 YKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNV 664 (1118)
Q Consensus 585 ~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsI 664 (1118)
.++.||||||++.+|+++||+||+.|+++.+ ..++.+.+++++++++.+||.+..++++++ |||||||||+|
T Consensus 79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~-----LSGGq~QRval 150 (372)
T 1g29_1 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPRE-----LSGGQRQRVAL 150 (372)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGGG-----SCHHHHHHHHH
T ss_pred hHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCccc-----CCHHHHHHHHH
Confidence 4578999999999999999999999987643 344555667899999999999999988876 99999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 665 GLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 665 ArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
||||+.+|+||||||||+|||+.++.++.+.|+++.++ |.|+|++|||.++ +..++|++++|.+ |++++.|+++++.
T Consensus 151 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~-a~~~adri~vl~~-G~i~~~g~~~~l~ 228 (372)
T 1g29_1 151 GRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVE-AMTMGDRIAVMNR-GVLQQVGSPDEVY 228 (372)
T ss_dssp HHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH-HHHHCSEEEEEET-TEEEEEECHHHHH
T ss_pred HHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHH-HHHhCCEEEEEeC-CEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999754 9999999999875 4589999999976 6999999998874
No 14
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=5.7e-45 Score=415.78 Aligned_cols=218 Identities=27% Similarity=0.381 Sum_probs=193.6
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-hhhcCeEE
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-QSYKRIIG 590 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Ig 590 (1118)
.|+++||+++|. ++++|+||||+|++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. ...++.||
T Consensus 3 ~l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig 78 (359)
T 2yyz_A 3 SIRVVNLKKYFG--KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVNDIPPKYREVG 78 (359)
T ss_dssp CEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGTTEE
T ss_pred EEEEEEEEEEEC--CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECCCCChhhCcEE
Confidence 378999999994 4679999999999999999999999999999999999998 689999999998743 23457899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
||||++.+|+++||+||+.|+++.+ ..++.+.+++++++++.+||.+..++++++ |||||||||+|||||+.
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~-----LSgGq~QRvalArAL~~ 150 (359)
T 2yyz_A 79 MVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKPTQ-----LSGGQQQRVALARALVK 150 (359)
T ss_dssp EECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCGGG-----SCHHHHHHHHHHHHHTT
T ss_pred EEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChhh-----CCHHHHHHHHHHHHHHc
Confidence 9999999999999999999976432 233444456789999999999999988876 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
+|+||||||||+|||+.++.++.+.|+++.++ |.|+|++|||.++ +..++|++++|.+ |+++..|+++++.
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~-~~~~adri~vl~~-G~i~~~g~~~~l~ 222 (359)
T 2yyz_A 151 QPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAE-AMTMASRIAVFNQ-GKLVQYGTPDEVY 222 (359)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHH-HHHHCSEEEEEET-TEEEEEECHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH-HHHhCCEEEEEEC-CEEEEeCCHHHHH
Confidence 99999999999999999999999999999754 9999999999875 4578999999976 6999999998874
No 15
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=6e-45 Score=415.09 Aligned_cols=218 Identities=29% Similarity=0.428 Sum_probs=194.3
Q ss_pred EEEEEeEEEEEcCCcce--eeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh------h
Q 048718 512 EVAFKDLTITLKGKNKH--LMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI------Q 583 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~--IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------~ 583 (1118)
.|+++||+++|. +++ +|+||||+|++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. .
T Consensus 3 ~l~i~~l~~~y~--~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~ 78 (353)
T 1oxx_K 3 RIIVKNVSKVFK--KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVASNGKLIVP 78 (353)
T ss_dssp CEEEEEEEEEEG--GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEEEETTEESSC
T ss_pred EEEEEeEEEEEC--CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECcccccccCC
Confidence 378999999994 356 9999999999999999999999999999999999998 689999999987532 2
Q ss_pred hhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 048718 584 SYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVN 663 (1118)
Q Consensus 584 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVs 663 (1118)
..++.||||||++.+|+++||+||+.|+++.+ ..++.+.+++++++++.+||.+..++++++ |||||||||+
T Consensus 79 ~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~-----LSGGq~QRva 150 (353)
T 1oxx_K 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPRE-----LSGAQQQRVA 150 (353)
T ss_dssp GGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGGG-----SCHHHHHHHH
T ss_pred hhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCChhh-----CCHHHHHHHH
Confidence 35678999999999999999999999986532 345555667899999999999999988876 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 664 VGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 664 IArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
|||||+.+|+||||||||+|||+.++.++.+.|+++.++ |+|+|++|||+++ +..++|++++|.+ |+++..|+++++
T Consensus 151 lAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~-~~~~adri~vl~~-G~i~~~g~~~~l 228 (353)
T 1oxx_K 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPAD-IFAIADRVGVLVK-GKLVQVGKPEDL 228 (353)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHH-HHHHCSEEEEEET-TEEEEEECHHHH
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEEcCHHHH
Confidence 999999999999999999999999999999999999754 9999999999875 4588999999976 699999999887
Q ss_pred H
Q 048718 743 E 743 (1118)
Q Consensus 743 ~ 743 (1118)
.
T Consensus 229 ~ 229 (353)
T 1oxx_K 229 Y 229 (353)
T ss_dssp H
T ss_pred H
Confidence 3
No 16
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=7.4e-45 Score=399.51 Aligned_cols=216 Identities=25% Similarity=0.358 Sum_probs=191.0
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcC
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKR 587 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~ 587 (1118)
..|+++||++.|. ++++|+||||+|++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. ..+++
T Consensus 10 ~~l~~~~l~~~~~--~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~ 85 (266)
T 4g1u_C 10 ALLEASHLHYHVQ--QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS--PSHGECHLLGQNLNSWQPKALAR 85 (266)
T ss_dssp CEEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC--CSSCEEEETTEETTTSCHHHHHH
T ss_pred ceEEEEeEEEEeC--CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECCcCCHHHHhh
Confidence 4689999999994 5789999999999999999999999999999999999998 689999999998642 34566
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
.++|++|++.+++.+||+||+.++..... ..+.+++++++++.+||.+..++.+++ |||||||||+||||
T Consensus 86 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~QRv~iAra 155 (266)
T 4g1u_C 86 TRAVMRQYSELAFPFSVSEVIQMGRAPYG-----GSQDRQALQQVMAQTDCLALAQRDYRV-----LSGGEQQRVQLARV 155 (266)
T ss_dssp HEEEECSCCCCCSCCBHHHHHHGGGTTSC-----STTHHHHHHHHHHHTTCSTTTTSBGGG-----CCHHHHHHHHHHHH
T ss_pred eEEEEecCCccCCCCCHHHHHHhhhhhcC-----cHHHHHHHHHHHHHcCChhHhcCCccc-----CCHHHHHHHHHHHH
Confidence 79999999999889999999998764321 112345688999999999988888876 99999999999999
Q ss_pred Hhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 668 MVM------EPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 668 Ll~------~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
|+. +|+||||||||+|||+.++.++++.|++++++ |+|||++||+++. +.+++|++++|.+ |++++.|+++
T Consensus 156 L~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~-~~~~~d~v~vl~~-G~i~~~g~~~ 233 (266)
T 4g1u_C 156 LAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNL-AALYADRIMLLAQ-GKLVACGTPE 233 (266)
T ss_dssp HHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHH-HHHHCSEEEEEET-TEEEEEECHH
T ss_pred HhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHH-HHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999 99999999999999999999999999999865 6799999999876 4578999999976 6999999998
Q ss_pred hH
Q 048718 741 KV 742 (1118)
Q Consensus 741 ~l 742 (1118)
++
T Consensus 234 ~~ 235 (266)
T 4g1u_C 234 EV 235 (266)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 17
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=9.4e-45 Score=392.65 Aligned_cols=217 Identities=27% Similarity=0.392 Sum_probs=188.0
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hh-hcC
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QS-YKR 587 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~-~r~ 587 (1118)
.++++||+++|. ++++|+||||+|++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. .. .++
T Consensus 6 ~l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~ 81 (240)
T 1ji0_A 6 VLEVQSLHVYYG--AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDITNKPAHVINRM 81 (240)
T ss_dssp EEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHT
T ss_pred eEEEEeEEEEEC--CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCCHHHHHhC
Confidence 589999999994 3679999999999999999999999999999999999998 689999999998642 12 345
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC-CCccccccccCccCCCCCHHHHHHHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLG-LQHIRDSLVGTVEKRGISGGQRKRVNVGL 666 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lg-L~~~~dt~vg~~~~rgLSGGERQRVsIAr 666 (1118)
.||||||++.+++.+||+||+.++.... ....+..+.++++++.++ |.+..++++++ |||||||||+|||
T Consensus 82 ~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~-----LSgGq~qrv~lAr 152 (240)
T 1ji0_A 82 GIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQLGGT-----LSGGEQQMLAIGR 152 (240)
T ss_dssp TEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSBSSS-----SCHHHHHHHHHHH
T ss_pred CEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCChhh-----CCHHHHHHHHHHH
Confidence 6999999999999999999999864211 112233456788999994 98888887766 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 667 EMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 667 ALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++. +.+++|++++|.+ |++++.|+++++.
T Consensus 153 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~-~~~~~d~v~~l~~-G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 153 ALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALG-ALKVAHYGYVLET-GQIVLEGKASELL 227 (240)
T ss_dssp HHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHH-HHHHCSEEEEEET-TEEEEEEEHHHHH
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEEEEC-CEEEEEcCHHHHh
Confidence 9999999999999999999999999999999998789999999999865 4578999999976 6899999987763
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.1e-44 Score=415.36 Aligned_cols=218 Identities=28% Similarity=0.393 Sum_probs=188.3
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-hhhcCeEE
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-QSYKRIIG 590 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Ig 590 (1118)
.|+++||+++|. ++.+|+||||+|++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. ...++.||
T Consensus 11 ~l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig 86 (372)
T 1v43_A 11 EVKLENLTKRFG--NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPKDRNIS 86 (372)
T ss_dssp CEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGGTEE
T ss_pred eEEEEEEEEEEC--CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCCCChhhCcEE
Confidence 489999999994 4679999999999999999999999999999999999998 689999999998743 23456799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
||||++.+|+++||+||+.|+++.+ ..++.+.+++++++++.+||.+..++++++ |||||||||+|||||+.
T Consensus 87 ~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~-----LSGGq~QRvalArAL~~ 158 (372)
T 1v43_A 87 MVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPAQ-----LSGGQRQRVAVARAIVV 158 (372)
T ss_dssp EEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCTTT-----CCSSCHHHHHHHHHHTT
T ss_pred EEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCChhh-----CCHHHHHHHHHHHHHhc
Confidence 9999999999999999999975432 345555667899999999999999988876 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
+|+||||||||+|||+.++.++.+.|+++.++ |.|+|++|||.++ +..++|++++|.+ |+++..|+++++.
T Consensus 159 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~-a~~~adri~vl~~-G~i~~~g~~~~l~ 230 (372)
T 1v43_A 159 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVE-AMTMGDRIAVMNR-GQLLQIGSPTEVY 230 (372)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH-HHHHCSEEEEEET-TEEEEEECHHHHH
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEeCCHHHHH
Confidence 99999999999999999999999999999765 9999999999875 4589999999976 6999999998874
No 19
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=3.3e-44 Score=394.08 Aligned_cols=219 Identities=26% Similarity=0.396 Sum_probs=188.9
Q ss_pred EEEEEeEEEEEcCCc---ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCe
Q 048718 512 EVAFKDLTITLKGKN---KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRI 588 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~---k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~ 588 (1118)
.++++||+++|..++ +++|+||||+|++||+++|+||||||||||||+|+|+++ |++|+|.++|+++....+++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~ 79 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKKGYEIRRN 79 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCHHHHGGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECchHHhhhh
Confidence 378999999995223 579999999999999999999999999999999999998 689999999988754345778
Q ss_pred EEEEcCCC-CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCccCCCCCHHHHHHHHHH
Q 048718 589 IGFVPQDD-IVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ--HIRDSLVGTVEKRGISGGQRKRVNVG 665 (1118)
Q Consensus 589 IgyV~Qd~-~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~--~~~dt~vg~~~~rgLSGGERQRVsIA 665 (1118)
||||+|++ .+++.+||+||+.|+..... ...+.+++++++++.+||. +..++++++ |||||||||+||
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~----~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~-----LSgGq~qRv~lA 150 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFY----PDRDPVPLVKKAMEFVGLDFDSFKDRVPFF-----LSGGEKRRVAIA 150 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTC----TTSCSHHHHHHHHHHTTCCHHHHTTCCGGG-----SCHHHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcC----CHHHHHHHHHHHHHHcCcCCcccccCChhh-----CCHHHHHHHHHH
Confidence 99999995 46677999999998753211 1112234578999999999 888888876 999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 666 LEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 666 rALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
|||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++. +..++|++++|.+ |++++.|+++++.
T Consensus 151 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~-~~~~~d~v~~l~~-G~i~~~g~~~~~~ 226 (266)
T 2yz2_A 151 SVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIET-VINHVDRVVVLEK-GKKVFDGTRMEFL 226 (266)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTT-TGGGCSEEEEEET-TEEEEEEEHHHHH
T ss_pred HHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEeCCHHHHh
Confidence 99999999999999999999999999999999998779999999999986 4568999999976 6899999988764
No 20
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2.6e-44 Score=408.95 Aligned_cols=213 Identities=27% Similarity=0.389 Sum_probs=189.5
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-hhhcCeEEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-QSYKRIIGF 591 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Igy 591 (1118)
|+++||+++|. ++ +|+||||+|++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. ...++.|||
T Consensus 2 l~~~~l~~~y~--~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~ 76 (348)
T 3d31_A 2 IEIESLSRKWK--NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKHDIAF 76 (348)
T ss_dssp EEEEEEEEECS--SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTTSCHHHHTCEE
T ss_pred EEEEEEEEEEC--CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECCCCchhhCcEEE
Confidence 68999999994 35 9999999999999999999999999999999999998 689999999998742 234677999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 048718 592 VPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVME 671 (1118)
Q Consensus 592 V~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~ 671 (1118)
|||++.+|+++||+||+.|++..+. .++. ++++++++.+||.+..++++++ |||||||||+|||||+.+
T Consensus 77 v~Q~~~l~~~ltv~enl~~~~~~~~---~~~~---~~v~~~l~~~~L~~~~~~~~~~-----LSgGq~QRvalAraL~~~ 145 (348)
T 3d31_A 77 VYQNYSLFPHMNVKKNLEFGMRMKK---IKDP---KRVLDTARDLKIEHLLDRNPLT-----LSGGEQQRVALARALVTN 145 (348)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHC---CCCH---HHHHHHHHHTTCTTTTTSCGGG-----SCHHHHHHHHHHHHTTSC
T ss_pred EecCcccCCCCCHHHHHHHHHHHcC---CCHH---HHHHHHHHHcCCchHhcCChhh-----CCHHHHHHHHHHHHHHcC
Confidence 9999999999999999999876431 1112 4688999999999999988876 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 672 PSLLILDEPTSGLDSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 672 P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
|+||||||||+|||+.++.++.+.|+++.+ .|+|+|++|||.++ +..++|++++|.+ |++++.|+++++.
T Consensus 146 P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~-~~~~adri~vl~~-G~i~~~g~~~~~~ 216 (348)
T 3d31_A 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTE-ARIMADRIAVVMD-GKLIQVGKPEEIF 216 (348)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHH-HHHHCSEEEEESS-SCEEEEECHHHHH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEECCHHHHH
Confidence 999999999999999999999999999975 49999999999875 4589999999976 6899999998763
No 21
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=6.9e-44 Score=386.31 Aligned_cols=212 Identities=31% Similarity=0.452 Sum_probs=185.7
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-hhhcCeEEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-QSYKRIIGF 591 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Igy 591 (1118)
++++||+++|+ + +|+||||+|++ |+++|+||||||||||||+|+|+++ |++|+|.++|+++.. ...++.|||
T Consensus 2 l~~~~l~~~y~--~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~i~~ 74 (240)
T 2onk_A 2 FLKVRAEKRLG--N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGF 74 (240)
T ss_dssp CEEEEEEEEET--T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBC
T ss_pred EEEEEEEEEeC--C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCchhhCcEEE
Confidence 57899999994 2 59999999999 9999999999999999999999998 689999999988642 234678999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 048718 592 VPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVME 671 (1118)
Q Consensus 592 V~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~ 671 (1118)
|||++.+++.+||+||+.|+...+ . ....+++++++++.+||.+..++++++ |||||||||+|||||+.+
T Consensus 75 v~q~~~l~~~ltv~enl~~~~~~~---~--~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGqkqRv~lAral~~~ 144 (240)
T 2onk_A 75 VPQDYALFPHLSVYRNIAYGLRNV---E--RVERDRRVREMAEKLGIAHLLDRKPAR-----LSGGERQRVALARALVIQ 144 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTS---C--HHHHHHHHHHHHHTTTCTTTTTCCGGG-----SCHHHHHHHHHHHHHTTC
T ss_pred EcCCCccCCCCcHHHHHHHHHHHc---C--CchHHHHHHHHHHHcCCHHHhcCChhh-----CCHHHHHHHHHHHHHHcC
Confidence 999999999999999999864321 1 112245688999999999988888876 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 672 PSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 672 P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
|++|||||||+|||+.++..+++.|++++++ |+|||++||+++. +.+++|++++|.+ |++++.|+++++.
T Consensus 145 p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~-~~~~~d~i~~l~~-G~i~~~g~~~~~~ 215 (240)
T 2onk_A 145 PRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE-AAMLADEVAVMLN-GRIVEKGKLKELF 215 (240)
T ss_dssp CSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHH-HHHHCSEEEEEET-TEEEEEECHHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEECCHHHHH
Confidence 9999999999999999999999999999754 9999999999875 4578999999976 6999999988764
No 22
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.6e-43 Score=385.11 Aligned_cols=220 Identities=24% Similarity=0.362 Sum_probs=180.4
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcC--CCCCCceeEEEECCEecCh---hh-h
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGR--VPGCIMSGTILVNGKVASI---QS-Y 585 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl--~~~~~~sG~I~inG~~~~~---~~-~ 585 (1118)
.++++||+++|. ++++|+||||+|++||+++|+||||||||||||+|+|+ ++ |++|+|.++|+++.. .. .
T Consensus 3 ~l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~--p~~G~I~~~g~~~~~~~~~~~~ 78 (250)
T 2d2e_A 3 QLEIRDLWASID--GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT--VERGEILLDGENILELSPDERA 78 (250)
T ss_dssp EEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE--EEEEEEEETTEECTTSCHHHHH
T ss_pred eEEEEeEEEEEC--CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCEECCCCCHHHHH
Confidence 488999999994 46799999999999999999999999999999999998 55 689999999998642 12 2
Q ss_pred cCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-CccccccccCccCCCCCHHHHHHHHH
Q 048718 586 KRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGL-QHIRDSLVGTVEKRGISGGQRKRVNV 664 (1118)
Q Consensus 586 r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL-~~~~dt~vg~~~~rgLSGGERQRVsI 664 (1118)
+..++||+|++.+++.+||+||+.++............+..++++++++.+|| .+..++++++ +|||||||||+|
T Consensus 79 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~----~LSgGqkQrv~i 154 (250)
T 2d2e_A 79 RKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNE----GFSGGEKKRNEI 154 (250)
T ss_dssp HTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTC----C----HHHHHHH
T ss_pred hCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCccc----CCCHHHHHHHHH
Confidence 45699999999999999999999987532111112233444678899999999 4777777642 399999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhc-cCcEEEEecCcEEEEecChhh
Q 048718 665 GLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRM-FDDLILLAKGGVIVYHGPVKK 741 (1118)
Q Consensus 665 ArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~-~D~vivL~~GG~iv~~G~~~~ 741 (1118)
||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++. +... +|++++|.+ |++++.|+++.
T Consensus 155 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~-~~~~~~d~v~~l~~-G~i~~~g~~~~ 230 (250)
T 2d2e_A 155 LQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRI-LNYIQPDKVHVMMD-GRVVATGGPEL 230 (250)
T ss_dssp HHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGG-GGTSCCSEEEEEET-TEEEEEESHHH
T ss_pred HHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhcCCEEEEEEC-CEEEEEeCHHH
Confidence 999999999999999999999999999999999986679999999999875 3456 599999976 68999999873
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=7.4e-44 Score=394.15 Aligned_cols=221 Identities=23% Similarity=0.356 Sum_probs=186.4
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC-----hhhh
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS-----IQSY 585 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~-----~~~~ 585 (1118)
..|+++||++.|. ++++|+||||+|++||+++|+||||||||||||+|+|+++ |++|+|.++|+++. ...+
T Consensus 20 ~~l~~~~l~~~y~--~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~ 95 (279)
T 2ihy_A 20 MLIQLDQIGRMKQ--GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFGKMPGKVGYSAETV 95 (279)
T ss_dssp EEEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTBCCC---CCHHHH
T ss_pred ceEEEEeEEEEEC--CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECCEEcccccCCHHHH
Confidence 3589999999994 4679999999999999999999999999999999999998 68999999998764 2345
Q ss_pred cCeEEEEcCCCCCC--CCCCHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 048718 586 KRIIGFVPQDDIVH--GNLTVEENLWFSARCRLS-ADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRV 662 (1118)
Q Consensus 586 r~~IgyV~Qd~~l~--~~LTV~EnL~f~a~lr~~-~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRV 662 (1118)
++.||||+|++.++ +.+||+||+.++...... ......+..++++++++.+||.+..++++++ |||||||||
T Consensus 96 ~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LSgGqkqRv 170 (279)
T 2ihy_A 96 RQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGY-----LSTGEKQRV 170 (279)
T ss_dssp HTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGG-----SCHHHHHHH
T ss_pred cCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhh-----CCHHHHHHH
Confidence 67899999997543 357999999886321100 0111223345688999999999988888876 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEE--EEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 663 NVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNI--CTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 663 sIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TI--IvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|| |++||+++. +.+++|++++|.+ |++++.|+++
T Consensus 171 ~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~-~~~~~d~v~~l~~-G~i~~~g~~~ 248 (279)
T 2ihy_A 171 MIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEE-ITANFSKILLLKD-GQSIQQGAVE 248 (279)
T ss_dssp HHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGG-CCTTCCEEEEEET-TEEEEEEEHH
T ss_pred HHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHH-HHHhCCEEEEEEC-CEEEEECCHH
Confidence 99999999999999999999999999999999999997669999 999999875 4578999999976 6899999987
Q ss_pred hH
Q 048718 741 KV 742 (1118)
Q Consensus 741 ~l 742 (1118)
++
T Consensus 249 ~~ 250 (279)
T 2ihy_A 249 DI 250 (279)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 24
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.9e-43 Score=389.28 Aligned_cols=221 Identities=23% Similarity=0.374 Sum_probs=182.6
Q ss_pred EEEEEeEEEEEcC-CcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcC
Q 048718 512 EVAFKDLTITLKG-KNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKR 587 (1118)
Q Consensus 512 ~l~~knLs~~~~~-~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~ 587 (1118)
.|+++||++.|.+ +++.+|+||||+|++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. ..+++
T Consensus 16 ~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGGBCHHHHHH
T ss_pred eEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEcccCCHHHHhc
Confidence 4899999999953 12679999999999999999999999999999999999998 689999999988632 34567
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHc--CCCccccccccCccCCCCCHHHHHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLS-ADLPKAEKVLVVERVIESL--GLQHIRDSLVGTVEKRGISGGQRKRVNV 664 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~-~~~~~~~~~~~v~~lL~~l--gL~~~~dt~vg~~~~rgLSGGERQRVsI 664 (1118)
.||||||++.+++ .||+|||.|+...... ...........++++++.+ ||.+..++++++ |||||||||+|
T Consensus 94 ~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~-----LSgGq~QRv~l 167 (271)
T 2ixe_A 94 QVAAVGQEPLLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQ-----LSGGQRQAVAL 167 (271)
T ss_dssp HEEEECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTT-----SCHHHHHHHHH
T ss_pred cEEEEecCCcccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCC-----CCHHHHHHHHH
Confidence 8999999998887 5999999986421100 0000111223356778888 787777777665 99999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 665 GLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 665 ArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
||||+.+|+||||||||+|||+.++..+++.|+++.+ +|+|||++||+++.. ..+|++++|.+ |++++.|+++++.
T Consensus 168 AraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~--~~~d~v~~l~~-G~i~~~g~~~~l~ 244 (271)
T 2ixe_A 168 ARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLA--ERAHHILFLKE-GSVCEQGTHLQLM 244 (271)
T ss_dssp HHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHH--TTCSEEEEEET-TEEEEEECHHHHH
T ss_pred HHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHH--HhCCEEEEEEC-CEEEEECCHHHHH
Confidence 9999999999999999999999999999999999864 489999999998753 45999999976 6899999988764
No 25
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=3.4e-43 Score=382.21 Aligned_cols=216 Identities=25% Similarity=0.452 Sum_probs=181.3
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcC
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKR 587 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~ 587 (1118)
..++++||+++|.++++.+|+||||+|++||+++|+||||||||||||+|+|+++ |++|+|.++|.++.. ..+++
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~~~~~~~~~~~~ 83 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLALADPNWLRR 83 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTSCHHHHHH
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHHHHHh
Confidence 4689999999994334679999999999999999999999999999999999998 689999999998642 34567
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccc-------cCccCCCCCHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLV-------GTVEKRGISGGQRK 660 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~v-------g~~~~rgLSGGERQ 660 (1118)
.||||||++.+++ +||+|||.++.. .... +.++++++.++|.+..++.+ +. .+..|||||||
T Consensus 84 ~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~~~LSgGq~q 152 (247)
T 2ff7_A 84 QVGVVLQDNVLLN-RSIIDNISLANP-----GMSV----EKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLSGGQRQ 152 (247)
T ss_dssp HEEEECSSCCCTT-SBHHHHHTTTCT-----TCCH----HHHHHHHHHHTCHHHHHTSTTGGGCBCST-TTTCCCHHHHH
T ss_pred cEEEEeCCCcccc-ccHHHHHhccCC-----CCCH----HHHHHHHHHhChHHHHHhCcchhhhhhhC-CCCCCCHHHHH
Confidence 8999999998886 699999988521 1122 23567778888866554432 21 34569999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
||+|||||+.+|+||||||||+|||+.++..+++.|+++. +|+|||++||+++.. +.+|++++|.+ |++++.|+++
T Consensus 153 Rv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~~--~~~d~v~~l~~-G~i~~~g~~~ 228 (247)
T 2ff7_A 153 RIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTV--KNADRIIVMEK-GKIVEQGKHK 228 (247)
T ss_dssp HHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGGG--TTSSEEEEEET-TEEEEEECHH
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHH--HhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999999999999999985 699999999998753 46999999976 6899999988
Q ss_pred hHH
Q 048718 741 KVE 743 (1118)
Q Consensus 741 ~l~ 743 (1118)
++.
T Consensus 229 ~l~ 231 (247)
T 2ff7_A 229 ELL 231 (247)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 26
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.7e-42 Score=380.71 Aligned_cols=231 Identities=26% Similarity=0.333 Sum_probs=189.2
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhh-cC
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSY-KR 587 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~-r~ 587 (1118)
.|+++||++.|. ++++|+||||+|++||+++|+||||||||||||+|+|+....|++|+|.++|+++.. ... ++
T Consensus 20 ~l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 20 MLSIKDLHVSVE--DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp CEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred eEEEEeEEEEEC--CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 489999999993 468999999999999999999999999999999999995211689999999988632 122 34
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHh-hc---cCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSAR-CR---LSADLPKAEKVLVVERVIESLGLQ-HIRDSLVGTVEKRGISGGQRKRV 662 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~-lr---~~~~~~~~~~~~~v~~lL~~lgL~-~~~dt~vg~~~~rgLSGGERQRV 662 (1118)
.|+||+|++.+++.+||.||+.+... .. ........+..++++++++.+||. +..+++++. .|||||||||
T Consensus 98 ~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~----~LSgGq~QRv 173 (267)
T 2zu0_C 98 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNV----GFSGGEKKRN 173 (267)
T ss_dssp TEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTT----TCCHHHHHHH
T ss_pred CEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCccc----CCCHHHHHHH
Confidence 59999999999999999999987642 11 111223444456789999999996 567776641 3999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhc-cCcEEEEecCcEEEEecChhh
Q 048718 663 NVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRM-FDDLILLAKGGVIVYHGPVKK 741 (1118)
Q Consensus 663 sIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~-~D~vivL~~GG~iv~~G~~~~ 741 (1118)
+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++.. ... +|++++|.+ |++++.|++++
T Consensus 174 ~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~-~~~~~d~v~~l~~-G~i~~~g~~~~ 251 (267)
T 2zu0_C 174 DILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRIL-DYIKPDYVHVLYQ-GRIVKSGDFTL 251 (267)
T ss_dssp HHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGG-GTSCCSEEEEEET-TEEEEEECTTH
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHH-HhhcCCEEEEEEC-CEEEEEcCHHH
Confidence 999999999999999999999999999999999998876699999999998753 344 899999976 68999999887
Q ss_pred HHHHHHhcCC
Q 048718 742 VEEYFASLGI 751 (1118)
Q Consensus 742 l~~yf~~lG~ 751 (1118)
+.. ++..++
T Consensus 252 ~~~-~~~~~~ 260 (267)
T 2zu0_C 252 VKQ-LEEQGY 260 (267)
T ss_dssp HHH-HHTTTC
T ss_pred Hhh-hhhcch
Confidence 653 344433
No 27
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.8e-42 Score=377.88 Aligned_cols=210 Identities=26% Similarity=0.395 Sum_probs=181.7
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEE
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGF 591 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 591 (1118)
.++++||++.|.. ++++|+||||+|++||+++|+||||||||||||+|+|+++ |++|+|. +++.|||
T Consensus 4 ~l~i~~l~~~y~~-~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~----------~~~~i~~ 70 (253)
T 2nq2_C 4 ALSVENLGFYYQA-ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIE----------VYQSIGF 70 (253)
T ss_dssp EEEEEEEEEEETT-TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC--CSEEEEE----------ECSCEEE
T ss_pred eEEEeeEEEEeCC-CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEE----------EeccEEE
Confidence 4889999999941 4679999999999999999999999999999999999998 6899998 2467999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 592 VPQDDIVHGNLTVEENLWFSARCRLS-ADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 592 V~Qd~~l~~~LTV~EnL~f~a~lr~~-~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
|||++.+++.+||+||+.++...... .........++++++++.+||.+..++++++ |||||||||+|||||+.
T Consensus 71 v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~qrv~lAraL~~ 145 (253)
T 2nq2_C 71 VPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTS-----LSGGQRQLILIARAIAS 145 (253)
T ss_dssp ECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGG-----SCHHHHHHHHHHHHHHT
T ss_pred EcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhh-----CCHHHHHHHHHHHHHHc
Confidence 99999999899999999987532111 0011223345688999999999988888776 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
+|+||||||||+|||+.++..+++.|++++++ |+|||++||+++. +.+++|++++|.+ |+ ++.|+++++
T Consensus 146 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~-~~~~~d~v~~l~~-G~-~~~g~~~~~ 215 (253)
T 2nq2_C 146 ECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ-VVAIANKTLLLNK-QN-FKFGETRNI 215 (253)
T ss_dssp TCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHH-HHHHCSEEEEEET-TE-EEEEEHHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEeC-Ce-EecCCHHHH
Confidence 99999999999999999999999999999876 9999999999875 4578999999976 58 899988765
No 28
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=3.7e-43 Score=393.20 Aligned_cols=215 Identities=27% Similarity=0.440 Sum_probs=180.6
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcC
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKR 587 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~ 587 (1118)
..|+++||+++|++ ++.+|+||||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..+|+
T Consensus 52 ~~i~~~~vs~~y~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~G~~i~~~~~~~~r~ 128 (306)
T 3nh6_A 52 GRIEFENVHFSYAD-GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD--ISSGCIRIDGQDISQVTQASLRS 128 (306)
T ss_dssp CCEEEEEEEEESST-TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC--CSEEEEEETTEETTSBCHHHHHH
T ss_pred CeEEEEEEEEEcCC-CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCcEEEECCEEcccCCHHHHhc
Confidence 46999999999963 4679999999999999999999999999999999999998 689999999998743 45678
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCCCCCHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH-------IRDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~-------~~dt~vg~~~~rgLSGGERQ 660 (1118)
.||||||++.+|+ .||+|||.|+... .... .+.++++.+++.+ ..++.+++ ....|||||||
T Consensus 129 ~i~~v~Q~~~lf~-~Tv~eNi~~~~~~-----~~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSGGqrQ 197 (306)
T 3nh6_A 129 HIGVVPQDTVLFN-DTIADNIRYGRVT-----AGND----EVEAAAQAAGIHDAIMAFPEGYRTQVGE-RGLKLSGGEKQ 197 (306)
T ss_dssp TEEEECSSCCCCS-EEHHHHHHTTSTT-----CCHH----HHHHHHHHHTCHHHHHHSTTGGGCEEST-TSBCCCHHHHH
T ss_pred ceEEEecCCccCc-ccHHHHHHhhccc-----CCHH----HHHHHHHHhCcHHHHHhccchhhhHhcC-CcCCCCHHHHH
Confidence 8999999999985 5999999987431 1222 2444555555543 33455553 44569999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
||+|||||+.+|+||||||||++||+.++..|++.|+++. +++|+|+|+|+++.. ..+|++++|.+ |++++.|+.+
T Consensus 198 RvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~~--~~aD~i~vl~~-G~iv~~G~~~ 273 (306)
T 3nh6_A 198 RVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVVAHRLSTV--VNADQILVIKD-GCIVERGRHE 273 (306)
T ss_dssp HHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH-TTSEEEEECCSHHHH--HTCSEEEEEET-TEEEEEECHH
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEEcChHHH--HcCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999999999999999886 478999999998753 45999999976 6999999998
Q ss_pred hHH
Q 048718 741 KVE 743 (1118)
Q Consensus 741 ~l~ 743 (1118)
++.
T Consensus 274 el~ 276 (306)
T 3nh6_A 274 ALL 276 (306)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 29
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.3e-42 Score=378.36 Aligned_cols=207 Identities=22% Similarity=0.324 Sum_probs=182.4
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcCe
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKRI 588 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 588 (1118)
.++++||++. ++|+||||+|++||+++|+||||||||||||+|+|+++ |+ |+|.++|+++. ...+++.
T Consensus 4 ~l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~~~~~~~~~~~ 74 (249)
T 2qi9_C 4 VMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLEAWSATKLALH 74 (249)
T ss_dssp EEEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGGGSCHHHHHHH
T ss_pred EEEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECCcCCHHHHhce
Confidence 4789999874 59999999999999999999999999999999999998 68 99999998863 2345677
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 048718 589 IGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEM 668 (1118)
Q Consensus 589 IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArAL 668 (1118)
||||+|++.+++.+||+||+.++.. .. .. .++++++++.+||.+..++.+++ |||||||||+|||||
T Consensus 75 i~~v~q~~~~~~~~tv~e~l~~~~~---~~-~~----~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~qrv~lAraL 141 (249)
T 2qi9_C 75 RAYLSQQQTPPFATPVWHYLTLHQH---DK-TR----TELLNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVV 141 (249)
T ss_dssp EEEECSCCCCCTTCBHHHHHHTTCS---ST-TC----HHHHHHHHHHTTCGGGTTSBGGG-----CCHHHHHHHHHHHHH
T ss_pred EEEECCCCccCCCCcHHHHHHHhhc---cC-Cc----HHHHHHHHHHcCChhHhcCChhh-----CCHHHHHHHHHHHHH
Confidence 9999999999999999999988531 11 11 34578999999999988888766 999999999999999
Q ss_pred hhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhh
Q 048718 669 VMEPS-------LLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKK 741 (1118)
Q Consensus 669 l~~P~-------lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~ 741 (1118)
+.+|+ +|||||||+|||+.++..+.+.|++++++|+|||++||+++. +.+++|++++|.+ |++++.|++++
T Consensus 142 ~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~-~~~~~d~v~~l~~-G~i~~~g~~~~ 219 (249)
T 2qi9_C 142 LQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNH-TLRHAHRAWLLKG-GKMLASGRREE 219 (249)
T ss_dssp HHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-HHHHCSEEEEEET-TEEEEEEEHHH
T ss_pred HcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEeCCHHH
Confidence 99999 999999999999999999999999998779999999999875 4578999999976 68999999877
Q ss_pred H
Q 048718 742 V 742 (1118)
Q Consensus 742 l 742 (1118)
+
T Consensus 220 ~ 220 (249)
T 2qi9_C 220 V 220 (249)
T ss_dssp H
T ss_pred H
Confidence 5
No 30
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-42 Score=371.13 Aligned_cols=199 Identities=21% Similarity=0.334 Sum_probs=172.6
Q ss_pred ceEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeE
Q 048718 510 TIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRII 589 (1118)
Q Consensus 510 ~~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~I 589 (1118)
+..|+++||+++|+ + ++|+||||+|++||+++|+||||||||||||+|+|+++ |++|+|.++|+++. .+++.|
T Consensus 8 ~~~l~~~~ls~~y~--~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~--~~~~~i 80 (214)
T 1sgw_A 8 GSKLEIRDLSVGYD--K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPIT--KVKGKI 80 (214)
T ss_dssp -CEEEEEEEEEESS--S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGG--GGGGGE
T ss_pred CceEEEEEEEEEeC--C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEhh--hhcCcE
Confidence 34689999999994 4 79999999999999999999999999999999999998 68999999998875 357789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 048718 590 GFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMV 669 (1118)
Q Consensus 590 gyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl 669 (1118)
+||||++.+++.+||+||+.++...+.. ... .++++++++.+||.+. ++++.+ |||||||||+||+||+
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~----~~~~~~~l~~~gl~~~-~~~~~~-----LSgGqkqrv~laraL~ 149 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGV-KVN----KNEIMDALESVEVLDL-KKKLGE-----LSQGTIRRVQLASTLL 149 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTC-CCC----HHHHHHHHHHTTCCCT-TSBGGG-----SCHHHHHHHHHHHHTT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCC-chH----HHHHHHHHHHcCCCcC-CCChhh-----CCHHHHHHHHHHHHHH
Confidence 9999999999999999999997653211 111 2457889999999887 777665 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEE
Q 048718 670 MEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILL 727 (1118)
Q Consensus 670 ~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL 727 (1118)
.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++. +...+|+++++
T Consensus 150 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~-~~~~~d~v~~~ 206 (214)
T 1sgw_A 150 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS-YCDVNENLHKY 206 (214)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT-TSSEEEEGGGG
T ss_pred hCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEe
Confidence 9999999999999999999999999999997668999999999986 44666666554
No 31
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.6e-42 Score=375.63 Aligned_cols=215 Identities=25% Similarity=0.414 Sum_probs=181.6
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcCeE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKRII 589 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~I 589 (1118)
++++||+++|+ +++++|+||||+|++||+++|+||||||||||||+|+|+++ |++|+|.++|+++.. ..+++.|
T Consensus 2 l~~~~l~~~y~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i 78 (243)
T 1mv5_A 2 LSARHVDFAYD-DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPIDNISLENWRSQI 78 (243)
T ss_dssp EEEEEEEECSS-SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEESTTTSCSCCTTTC
T ss_pred EEEEEEEEEeC-CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHHHHHhhE
Confidence 68999999994 34679999999999999999999999999999999999998 689999999988642 3456789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CccCCCCCHHHHHHHH
Q 048718 590 GFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVG------TVEKRGISGGQRKRVN 663 (1118)
Q Consensus 590 gyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg------~~~~rgLSGGERQRVs 663 (1118)
+||||++.+++ .||+|||.|+.. . .... +.++++++.+++.+..++.+. ...+..|||||||||+
T Consensus 79 ~~v~q~~~l~~-~tv~enl~~~~~---~-~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~ 149 (243)
T 1mv5_A 79 GFVSQDSAIMA-GTIRENLTYGLE---G-DYTD----EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLA 149 (243)
T ss_dssp CEECCSSCCCC-EEHHHHTTSCTT---S-CSCH----HHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHH
T ss_pred EEEcCCCcccc-ccHHHHHhhhcc---C-CCCH----HHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHH
Confidence 99999998887 599999987531 1 1122 246788899999876655431 1134569999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 664 VGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 664 IArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
|||||+.+|+||||||||+|||+.++..+++.|+++. +|+|||++||+++. + ..+|++++|.+ |++++.|+++++.
T Consensus 150 lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~-~-~~~d~v~~l~~-G~i~~~g~~~~~~ 225 (243)
T 1mv5_A 150 IARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLST-I-VDADKIYFIEK-GQITGSGKHNELV 225 (243)
T ss_dssp HHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHH-H-HHCSEEEEEET-TEECCCSCHHHHH
T ss_pred HHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHH-H-HhCCEEEEEEC-CEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999987 69999999999874 3 46999999976 6899999988764
No 32
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=2.7e-41 Score=369.87 Aligned_cols=214 Identities=29% Similarity=0.458 Sum_probs=177.2
Q ss_pred EEEEEeEEEEEcCC-cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcC
Q 048718 512 EVAFKDLTITLKGK-NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKR 587 (1118)
Q Consensus 512 ~l~~knLs~~~~~~-~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~ 587 (1118)
.|+++||++.|.+. .+++|+||||+|++||+++|+||||||||||||+|+|+++ + +|+|.++|+++.. ..+++
T Consensus 17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i~~~~~~~~~~ 93 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNVNKYNRNSIRS 93 (260)
T ss_dssp CEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEGGGBCHHHHHT
T ss_pred eEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEhhhcCHHHHhc
Confidence 48999999999532 2469999999999999999999999999999999999997 4 8999999988632 34677
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccCCCCCHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHI-------RDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~-------~dt~vg~~~~rgLSGGERQ 660 (1118)
.|+||||++.+++ .||+|||.|+.. .... +.+.++++.++|.+. .++.++. .+..|||||||
T Consensus 94 ~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~-~~~~LSgGqkq 162 (260)
T 2ghi_A 94 IIGIVPQDTILFN-ETIKYNILYGKL-----DATD----EEVIKATKSAQLYDFIEALPKKWDTIVGN-KGMKLSGGERQ 162 (260)
T ss_dssp TEEEECSSCCCCS-EEHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEESS-SSBCCCHHHHH
T ss_pred cEEEEcCCCcccc-cCHHHHHhccCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccccccC-CcCcCCHHHHH
Confidence 8999999999886 699999988521 1122 234566666666443 3333332 34569999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
||+|||||+.+|+||||||||+|||+.++..+++.|+++. +|+|||++||+++.. ..+|++++|.+ |++++.|+++
T Consensus 163 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~~~tviivtH~~~~~--~~~d~i~~l~~-G~i~~~g~~~ 238 (260)
T 2ghi_A 163 RIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-KNRTLIIIAHRLSTI--SSAESIILLNK-GKIVEKGTHK 238 (260)
T ss_dssp HHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGS--TTCSEEEEEET-TEEEEEECHH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHHHH--HhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999999999999999985 489999999998753 46999999976 6999999988
Q ss_pred hHH
Q 048718 741 KVE 743 (1118)
Q Consensus 741 ~l~ 743 (1118)
++.
T Consensus 239 ~l~ 241 (260)
T 2ghi_A 239 DLL 241 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 33
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=6.4e-41 Score=367.79 Aligned_cols=208 Identities=22% Similarity=0.333 Sum_probs=179.1
Q ss_pred EEEEeEEEEEcCC--cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEE
Q 048718 513 VAFKDLTITLKGK--NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIG 590 (1118)
Q Consensus 513 l~~knLs~~~~~~--~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 590 (1118)
++++||+++|.++ .+.+|+|+||+|+ ||+++|+||||||||||||+|+|++ + ++|+|.++|+++.....++.|+
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p--~~G~I~~~g~~~~~~~~~~~i~ 77 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P--YSGNIFINGMEVRKIRNYIRYS 77 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C--CEEEEEETTEEGGGCSCCTTEE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C--CCcEEEECCEECcchHHhhheE
Confidence 6899999999421 1679999999999 9999999999999999999999998 4 7999999998764211256799
Q ss_pred -EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHHHHHHHH
Q 048718 591 -FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-HIRDSLVGTVEKRGISGGQRKRVNVGLEM 668 (1118)
Q Consensus 591 -yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-~~~dt~vg~~~~rgLSGGERQRVsIArAL 668 (1118)
||||++.+ .+||+||+.++.... ... .++++++++.+||. +..++++++ |||||||||+|||||
T Consensus 78 ~~v~Q~~~l--~~tv~enl~~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~~~~-----LSgGqkqRv~lAraL 143 (263)
T 2pjz_A 78 TNLPEAYEI--GVTVNDIVYLYEELK---GLD----RDLFLEMLKALKLGEEILRRKLYK-----LSAGQSVLVRTSLAL 143 (263)
T ss_dssp ECCGGGSCT--TSBHHHHHHHHHHHT---CCC----HHHHHHHHHHTTCCGGGGGSBGGG-----SCHHHHHHHHHHHHH
T ss_pred EEeCCCCcc--CCcHHHHHHHhhhhc---chH----HHHHHHHHHHcCCChhHhcCChhh-----CCHHHHHHHHHHHHH
Confidence 99999887 889999999976432 111 23578899999998 888888776 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccC-cEEEEecCcEEEEecChhhHH
Q 048718 669 VMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFD-DLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 669 l~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D-~vivL~~GG~iv~~G~~~~l~ 743 (1118)
+.+|++|||||||+|||+.++..+++.|+++++ |||++||+++. +.+++| ++++|.+ |++++.|+++++.
T Consensus 144 ~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~~-~~~~~d~~i~~l~~-G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 144 ASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELDM-LNLYKEYKAYFLVG-NRLQGPISVSELL 214 (263)
T ss_dssp HTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGGG-GGGCTTSEEEEEET-TEEEEEEEHHHHH
T ss_pred HhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHHH-HHHhcCceEEEEEC-CEEEEecCHHHHH
Confidence 999999999999999999999999999988743 99999999875 457899 9999976 6899999988764
No 34
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.4e-41 Score=386.19 Aligned_cols=215 Identities=20% Similarity=0.346 Sum_probs=182.7
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcC
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKR 587 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~ 587 (1118)
..|+++||+++|..+++.+|+||||+|++||+++|+||||||||||||+|+|+++ ++|+|.++|+++.. ..+++
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~i~~~~~~~~rr 94 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSWDSITLEQWRK 94 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCBTTSSCHHHHHH
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEECCcCChHHHhC
Confidence 4589999999996445789999999999999999999999999999999999985 68999999987642 34577
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccC------ccCCCCCHHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGT------VEKRGISGGQRKR 661 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~------~~~rgLSGGERQR 661 (1118)
.||||||++.+|+ +||+||+.+.. ... .++++++++.++|.+..++++.. .....||||||||
T Consensus 95 ~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQR 163 (390)
T 3gd7_A 95 AFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQL 163 (390)
T ss_dssp TEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHH
T ss_pred CEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHH
Confidence 8999999999997 69999996421 112 23477899999998877776643 1223499999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhh
Q 048718 662 VNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKK 741 (1118)
Q Consensus 662 VsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~ 741 (1118)
|+|||||+.+|+||||||||+|||+.++.++.+.|+++. .+.|+|+++|+.+ . ..++|++++|.+ |++++.|++++
T Consensus 164 valARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e-~-~~~aDri~vl~~-G~i~~~g~~~e 239 (390)
T 3gd7_A 164 MCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE-A-MLECDQFLVIEE-NKVRQYDSILE 239 (390)
T ss_dssp HHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG-G-GTTCSEEEEEET-TEEEEESSHHH
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH-H-HHhCCEEEEEEC-CEEEEECCHHH
Confidence 999999999999999999999999999999999998753 5899999999975 3 367999999976 69999999988
Q ss_pred HH
Q 048718 742 VE 743 (1118)
Q Consensus 742 l~ 743 (1118)
+.
T Consensus 240 l~ 241 (390)
T 3gd7_A 240 LY 241 (390)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.7e-40 Score=356.94 Aligned_cols=204 Identities=23% Similarity=0.371 Sum_probs=166.9
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEE
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGF 591 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 591 (1118)
.++++||++.|+.+++++|+||||+|++||+++|+||||||||||||+|+|+++ |++|+|.++| .|+|
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g----------~i~~ 73 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG----------RISF 73 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEECS----------CEEE
T ss_pred eEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCccEEEECC----------EEEE
Confidence 589999999995445689999999999999999999999999999999999998 6899999998 3899
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCccCCCCCHHHHHHHHH
Q 048718 592 VPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIR-------DSLVGTVEKRGISGGQRKRVNV 664 (1118)
Q Consensus 592 V~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~-------dt~vg~~~~rgLSGGERQRVsI 664 (1118)
|+|++.+++. ||+||+.|+.. .... .++++++.+++.+.. ++.+++ .+..|||||||||+|
T Consensus 74 v~q~~~~~~~-tv~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LSgGqkqrv~l 141 (229)
T 2pze_A 74 CSQFSWIMPG-TIKENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARISL 141 (229)
T ss_dssp ECSSCCCCSB-CHHHHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCT-TCTTSCHHHHHHHHH
T ss_pred EecCCcccCC-CHHHHhhccCC------cChH----HHHHHHHHhCcHHHHHhCcccccccccC-CCCcCCHHHHHHHHH
Confidence 9999998885 99999988531 1111 133444555554322 222322 345699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 665 GLEMVMEPSLLILDEPTSGLDSSSSQLLLRA-LRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 665 ArALl~~P~lLlLDEPTsGLD~~sa~~i~~~-Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
||||+.+|+||||||||+|||+.++..+++. ++++. +|+|||++||+++. + ..+|++++|.+ |++++.|+++++.
T Consensus 142 Aral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~-~-~~~d~v~~l~~-G~i~~~g~~~~~~ 217 (229)
T 2pze_A 142 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHE-GSSYFYGTFSELQ 217 (229)
T ss_dssp HHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHH-H-HHCSEEEEEET-TEEEEEECHHHHH
T ss_pred HHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHH-H-HhCCEEEEEEC-CEEEEECCHHHHH
Confidence 9999999999999999999999999999996 45553 48999999999865 3 45999999976 6899999988764
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=3.3e-40 Score=356.58 Aligned_cols=210 Identities=22% Similarity=0.386 Sum_probs=164.2
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEE
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGF 591 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 591 (1118)
.++++||++.|..+++.+|+||||+|++||+++|+||||||||||||+|+|+++ |++|+|.++| .|+|
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g----------~i~~ 70 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG----------SVAY 70 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----------CEEE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----------EEEE
Confidence 378999999995334679999999999999999999999999999999999998 6899999998 3899
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 592 VPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH-IRDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 592 V~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~-~~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
|+|++.+ +.+||+|||.++... . ....+.......+++.+++.. ..++.++ ..+..|||||||||+|||||+.
T Consensus 71 v~Q~~~~-~~~tv~enl~~~~~~--~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGqkqRv~lAraL~~ 144 (237)
T 2cbz_A 71 VPQQAWI-QNDSLRENILFGCQL--E--EPYYRSVIQACALLPDLEILPSGDRTEIG-EKGVNLSGGQKQRVSLARAVYS 144 (237)
T ss_dssp ECSSCCC-CSEEHHHHHHTTSCC--C--TTHHHHHHHHTTCHHHHTTSTTGGGSEES-TTSBCCCHHHHHHHHHHHHHHH
T ss_pred EcCCCcC-CCcCHHHHhhCcccc--C--HHHHHHHHHHHhhHHHHHhcccccccccc-CCCCCCCHHHHHHHHHHHHHhc
Confidence 9999865 578999999886421 1 111111001111222333321 1112222 1345699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALR---REALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr---~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
+|+||||||||+|||+.++..+++.|+ .+. +|+|||++||+++.. ..+|++++|.+ |++++.|+++++.
T Consensus 145 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~~--~~~d~v~~l~~-G~i~~~g~~~~~~ 216 (237)
T 2cbz_A 145 NADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSYL--PQVDVIIVMSG-GKISEMGSYQELL 216 (237)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTTG--GGSSEEEEEET-TEEEEEECHHHHH
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHHH--HhCCEEEEEeC-CEEEEeCCHHHHh
Confidence 999999999999999999999999985 333 589999999999853 57999999976 6899999988764
No 37
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.3e-39 Score=393.23 Aligned_cols=217 Identities=25% Similarity=0.411 Sum_probs=184.3
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcC
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKR 587 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~ 587 (1118)
..++++||+++|+++++++|+|+|++|++||+++|+||||||||||+|+|+|+++ |++|+|.+||+++.. ..+|+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~~~~~~~~~~~~ 417 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYTLASLRN 417 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEETTTBCHHHHHH
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC--CCCCeEEECCEEccccCHHHHHh
Confidence 3599999999995333679999999999999999999999999999999999998 689999999998742 45677
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccCCCCCHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHI-------RDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~-------~dt~vg~~~~rgLSGGERQ 660 (1118)
.|+||||++.+|+. ||+|||.++.. + ...+ +.++++++.+++.+. .++.+|+ ....|||||||
T Consensus 418 ~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~~----~~~~~~l~~~~l~~~~~~~p~g~~~~~~~-~~~~LSgGq~q 487 (582)
T 3b60_A 418 QVALVSQNVHLFND-TVANNIAYART---E-EYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLSGGQRQ 487 (582)
T ss_dssp TEEEECSSCCCCSS-BHHHHHHTTTT---S-CCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSCHHHHH
T ss_pred hCeEEccCCcCCCC-CHHHHHhccCC---C-CCCH----HHHHHHHHHcCCHHHHHhccccccccccC-CCCCCCHHHHH
Confidence 89999999999875 99999998631 1 1222 236677777777543 4556654 45679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
||+|||||+++|+||+|||||++||+.++..+.+.|+++.+ |+|+|+++|+++.. +.+|++++|++ |++++.|+.+
T Consensus 488 rl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~--~~~d~i~~l~~-G~i~~~g~~~ 563 (582)
T 3b60_A 488 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLSTI--EQADEIVVVED-GIIVERGTHS 563 (582)
T ss_dssp HHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGGT--TTCSEEEEEET-TEEEEEECHH
T ss_pred HHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHHH--HhCCEEEEEEC-CEEEEecCHH
Confidence 99999999999999999999999999999999999999864 99999999998753 57999999976 6999999998
Q ss_pred hHH
Q 048718 741 KVE 743 (1118)
Q Consensus 741 ~l~ 743 (1118)
++.
T Consensus 564 ~l~ 566 (582)
T 3b60_A 564 ELL 566 (582)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 38
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=4e-40 Score=397.60 Aligned_cols=216 Identities=25% Similarity=0.399 Sum_probs=182.8
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcC
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKR 587 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 587 (1118)
..++++||+++|+++++++|+|+|++|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++. ...+|+
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~~~~~~~~~~r~ 415 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHNIKDFLTGSLRN 415 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEEGGGSCHHHHHH
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHHHHhh
Confidence 4699999999997555689999999999999999999999999999999999998 68999999999864 345678
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCCCCCHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGL-------QHIRDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL-------~~~~dt~vg~~~~rgLSGGERQ 660 (1118)
.||||+|++.+|+. ||+||+.++.. ...++ .+.+.++..++ .+..++.+|+ ....|||||||
T Consensus 416 ~i~~v~Q~~~l~~~-tv~eni~~~~~-----~~~~~----~~~~~~~~~~~~~~~~~lp~g~~t~~~~-~g~~LSgGq~Q 484 (578)
T 4a82_A 416 QIGLVQQDNILFSD-TVKENILLGRP-----TATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSGGQKQ 484 (578)
T ss_dssp TEEEECSSCCCCSS-BHHHHHGGGCS-----SCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSCHHHHH
T ss_pred heEEEeCCCccCcc-cHHHHHhcCCC-----CCCHH----HHHHHHHHhCcHHHHHhCcchhhhhhcc-CCCcCCHHHHH
Confidence 89999999999976 99999988631 11222 24445555544 3345666664 45679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
||+|||||+++|++|+|||||+|||+.++..+.+.|+++. +|+|+|+++|+++.. +.+|++++|++ |++++.|+.+
T Consensus 485 rv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~--~~~d~i~~l~~-G~i~~~g~~~ 560 (578)
T 4a82_A 485 RLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLSTI--THADKIVVIEN-GHIVETGTHR 560 (578)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGT--TTCSEEEEEET-TEEEEEECHH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHH--HcCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999999999999998874 579999999999853 56999999976 6999999998
Q ss_pred hHH
Q 048718 741 KVE 743 (1118)
Q Consensus 741 ~l~ 743 (1118)
++.
T Consensus 561 el~ 563 (578)
T 4a82_A 561 ELI 563 (578)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 39
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.9e-40 Score=401.03 Aligned_cols=217 Identities=24% Similarity=0.405 Sum_probs=181.8
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcC
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKR 587 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 587 (1118)
..++++||+++|+++++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+||+++. ...+|+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i~i~g~~i~~~~~~~~r~ 417 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID--PERGRVEVDELDVRTVKLKDLRG 417 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC--CSEEEEEESSSBGGGBCHHHHHH
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEECCEEcccCCHHHHHh
Confidence 4699999999997556789999999999999999999999999999999999998 68999999998864 345688
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCCCCCHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGL-------QHIRDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL-------~~~~dt~vg~~~~rgLSGGERQ 660 (1118)
.|+||||++.+|+. ||+|||.++.. ....++ +.+.++..++ .+..++.+++ .+..|||||||
T Consensus 418 ~i~~v~Q~~~lf~~-tv~eni~~~~~-----~~~~~~----~~~~~~~~~~~~~i~~l~~g~~~~~~~-~~~~LSgGqrQ 486 (587)
T 3qf4_A 418 HISAVPQETVLFSG-TIKENLKWGRE-----DATDDE----IVEAAKIAQIHDFIISLPEGYDSRVER-GGRNFSGGQKQ 486 (587)
T ss_dssp HEEEECSSCCCCSE-EHHHHHTTTCS-----SCCHHH----HHHHHHHTTCHHHHHTSSSGGGCEECS-SSCSSCHHHHH
T ss_pred heEEECCCCcCcCc-cHHHHHhccCC-----CCCHHH----HHHHHHHhCcHHHHHhcccchhhHhcC-CCCCcCHHHHH
Confidence 89999999999965 99999987632 122222 2233333333 3345666664 45679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
||+|||||+++|+||+|||||++||+.++.++.+.|+++. +|+|+|+++|+++. ...+|++++|++ |++++.|+.+
T Consensus 487 rv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--~~~~d~i~vl~~-G~i~~~g~~~ 562 (587)
T 3qf4_A 487 RLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPT--ALLADKILVLHE-GKVAGFGTHK 562 (587)
T ss_dssp HHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHH--HTTSSEEEEEET-TEEEEEECHH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHH--HHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999999999999998874 58999999999875 368999999976 6999999999
Q ss_pred hHHH
Q 048718 741 KVEE 744 (1118)
Q Consensus 741 ~l~~ 744 (1118)
++.+
T Consensus 563 el~~ 566 (587)
T 3qf4_A 563 ELLE 566 (587)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8753
No 40
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.1e-39 Score=394.92 Aligned_cols=219 Identities=26% Similarity=0.398 Sum_probs=183.9
Q ss_pred eE-EEEEeEEEEEcCC-cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhh
Q 048718 511 IE-VAFKDLTITLKGK-NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSY 585 (1118)
Q Consensus 511 ~~-l~~knLs~~~~~~-~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~ 585 (1118)
.. ++++||+++|+++ ++++|+|+|++|++||+++|+||||||||||+|+|+|+++ |++|+|.+||+++.. ..+
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~i~~~~~~~~ 416 (595)
T 2yl4_A 339 QGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD--PASGTISLDGHDIRQLNPVWL 416 (595)
T ss_dssp CCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC--CSEEEEEETTEETTTBCHHHH
T ss_pred CCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCEEhhhCCHHHH
Confidence 35 9999999999643 3579999999999999999999999999999999999998 689999999998742 456
Q ss_pred cCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCCCCCHHH
Q 048718 586 KRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH-------IRDSLVGTVEKRGISGGQ 658 (1118)
Q Consensus 586 r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~-------~~dt~vg~~~~rgLSGGE 658 (1118)
|+.|+||+|++.+|+ .||+|||.++.... ....+ +.++++++.+|+.+ ..|+.+|+ .+..|||||
T Consensus 417 ~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~--~~~~~----~~~~~~~~~~~l~~~~~~l~~g~~~~~~~-~~~~LSgGq 488 (595)
T 2yl4_A 417 RSKIGTVSQEPILFS-CSIAENIAYGADDP--SSVTA----EEIQRVAEVANAVAFIRNFPQGFNTVVGE-KGVLLSGGQ 488 (595)
T ss_dssp HHSEEEECSSCCCCS-SBHHHHHHTTSSST--TTSCH----HHHHHHHHHTTCHHHHHTSSSGGGCBCSS-SSCCCCHHH
T ss_pred HhceEEEccCCcccC-CCHHHHHhhcCCCc--cccCH----HHHHHHHHHcCCHHHHHhCcccccccccC-CCCcCCHHH
Confidence 778999999999987 59999999864210 11222 34677788887643 35667765 456799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecC
Q 048718 659 RKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGP 738 (1118)
Q Consensus 659 RQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~ 738 (1118)
||||+|||||+++|+||+|||||++||+.++..+.+.|+++.+ |+|+|+++|+++. + +.+|++++|++ |++++.|+
T Consensus 489 ~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~-G~i~~~g~ 564 (595)
T 2yl4_A 489 KQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLST-I-KNANMVAVLDQ-GKITEYGK 564 (595)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHH-H-HHSSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHH-H-HcCCEEEEEEC-CEEEEECC
Confidence 9999999999999999999999999999999999999999875 8999999999875 3 56999999976 69999999
Q ss_pred hhhHH
Q 048718 739 VKKVE 743 (1118)
Q Consensus 739 ~~~l~ 743 (1118)
.+++.
T Consensus 565 ~~~l~ 569 (595)
T 2yl4_A 565 HEELL 569 (595)
T ss_dssp SCC--
T ss_pred HHHHH
Confidence 88764
No 41
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.2e-39 Score=393.78 Aligned_cols=217 Identities=26% Similarity=0.439 Sum_probs=184.0
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcC
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKR 587 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 587 (1118)
..++++||+++|+++++++|+|+|++|++||+++|+||||||||||+|+|+|+++ |++|+|.+||+++. ...+|+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~~~~~~~~~~~~ 417 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD--VDSGSICLDGHDVRDYKLTNLRR 417 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEhhhCCHHHHhc
Confidence 4699999999996433679999999999999999999999999999999999998 68999999998863 345788
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccCCCCCHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHI-------RDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~-------~dt~vg~~~~rgLSGGERQ 660 (1118)
.||||||++.+|+. ||+|||.++.. + ...+ +.++++++.+|+.+. .++.+|+ ....|||||||
T Consensus 418 ~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~~----~~~~~~~~~~~l~~~~~~~p~g~~t~~~~-~~~~LSgGq~q 487 (582)
T 3b5x_A 418 HFALVSQNVHLFND-TIANNIAYAAE---G-EYTR----EQIEQAARQAHAMEFIENMPQGLDTVIGE-NGTSLSGGQRQ 487 (582)
T ss_pred CeEEEcCCCccccc-cHHHHHhccCC---C-CCCH----HHHHHHHHHCCCHHHHHhCcccccchhcC-CCCcCCHHHHH
Confidence 89999999999875 99999998631 1 1222 246677777777544 3455554 45679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
||+|||||+++|+||+|||||++||+.++..+.+.|+++. +|+|+|+++|+++. + +.+|++++|++ |++++.|+.+
T Consensus 488 r~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~-~-~~~d~i~~l~~-G~i~~~g~~~ 563 (582)
T 3b5x_A 488 RVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-KNKTVLVIAHRLST-I-EQADEILVVDE-GEIIERGRHA 563 (582)
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999999999999999886 48999999999875 3 57999999976 6999999998
Q ss_pred hHH
Q 048718 741 KVE 743 (1118)
Q Consensus 741 ~l~ 743 (1118)
++.
T Consensus 564 ~l~ 566 (582)
T 3b5x_A 564 DLL 566 (582)
T ss_pred HHH
Confidence 874
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.7e-39 Score=393.56 Aligned_cols=215 Identities=27% Similarity=0.405 Sum_probs=179.7
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcC
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKR 587 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 587 (1118)
..++++||+++|+ +++++|+|+|++|++||+++|+||||||||||+|+|+|+++ |++|+|.+||+++. ...+|+
T Consensus 353 ~~i~~~~v~~~y~-~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~i~~~~~~~~r~ 429 (598)
T 3qf4_B 353 GEIEFKNVWFSYD-KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD--VDRGQILVDGIDIRKIKRSSLRS 429 (598)
T ss_dssp CCEEEEEEECCSS-SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC--CSEEEEEETTEEGGGSCHHHHHH
T ss_pred CeEEEEEEEEECC-CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCeEEEECCEEhhhCCHHHHHh
Confidence 4699999999995 34679999999999999999999999999999999999998 68999999999864 345788
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCCCHHHHH
Q 048718 588 IIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-------HIRDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 588 ~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-------~~~dt~vg~~~~rgLSGGERQ 660 (1118)
.||||+|++.+|+ .||+|||.++.. ...++ .+.++++..++. +..++.+|+ ....|||||||
T Consensus 430 ~i~~v~Q~~~lf~-~tv~eni~~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~-~g~~LSgGq~Q 498 (598)
T 3qf4_B 430 SIGIVLQDTILFS-TTVKENLKYGNP-----GATDE----EIKEAAKLTHSDHFIKHLPEGYETVLTD-NGEDLSQGQRQ 498 (598)
T ss_dssp HEEEECTTCCCCS-SBHHHHHHSSST-----TCCTT----HHHHHTTTTTCHHHHHTSTTGGGCBCHH-HHTTSCHHHHH
T ss_pred ceEEEeCCCcccc-ccHHHHHhcCCC-----CCCHH----HHHHHHHHhCCHHHHHhccccccchhcC-CCCCCCHHHHH
Confidence 8999999999986 599999988632 11111 233444444443 334555553 34569999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChh
Q 048718 661 RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVK 740 (1118)
Q Consensus 661 RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~ 740 (1118)
||+|||||+++|+||+|||||++||+.++..+.+.|+++. +|+|+|+++|+++.. +.+|++++|++ |++++.|+.+
T Consensus 499 rv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~--~~~d~i~~l~~-G~i~~~g~~~ 574 (598)
T 3qf4_B 499 LLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNTI--KNADLIIVLRD-GEIVEMGKHD 574 (598)
T ss_dssp HHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTHH--HHCSEEEEECS-SSEEECSCHH
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHH--HcCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999999999999999885 589999999999853 56999999976 6899999998
Q ss_pred hHH
Q 048718 741 KVE 743 (1118)
Q Consensus 741 ~l~ 743 (1118)
++.
T Consensus 575 ~l~ 577 (598)
T 3qf4_B 575 ELI 577 (598)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 43
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.9e-38 Score=412.03 Aligned_cols=219 Identities=24% Similarity=0.438 Sum_probs=187.7
Q ss_pred eEEEEEeEEEEEcCC-cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhc
Q 048718 511 IEVAFKDLTITLKGK-NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYK 586 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~-~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r 586 (1118)
..|+|+||+|+|+.+ +.+||+||||+|++||.+||+||||||||||+++|.|+++ |++|+|++||.++. ...+|
T Consensus 1075 g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~di~~i~~~~lR 1152 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSEIKTLNPEHTR 1152 (1321)
T ss_dssp CCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEETTTBCHHHHH
T ss_pred CeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc--CCCCEEEECCEEhhhCCHHHHH
Confidence 469999999999643 4579999999999999999999999999999999999998 68999999999874 46789
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCCCCCHHHH
Q 048718 587 RIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGL-------QHIRDSLVGTVEKRGISGGQR 659 (1118)
Q Consensus 587 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL-------~~~~dt~vg~~~~rgLSGGER 659 (1118)
++|+|||||+.+|.. ||+|||.|+.. +.+.++++ +.++++..++ .+..||.+|+ ....||||||
T Consensus 1153 ~~i~~V~Qdp~LF~g-TIreNI~~gld---~~~~sd~e----i~~Al~~a~l~~~I~~Lp~GldT~vge-~G~~LSgGQr 1223 (1321)
T 4f4c_A 1153 SQIAIVSQEPTLFDC-SIAENIIYGLD---PSSVTMAQ----VEEAARLANIHNFIAELPEGFETRVGD-RGTQLSGGQK 1223 (1321)
T ss_dssp TTEEEECSSCCCCSE-EHHHHHSSSSC---TTTSCHHH----HHHHHHHTTCHHHHHTSTTTTCSEETT-TSCSSCHHHH
T ss_pred hheEEECCCCEeeCc-cHHHHHhccCC---CCCCCHHH----HHHHHHHhCChHHHHcCcCCCCCEecC-CCcccCHHHH
Confidence 999999999999965 99999988742 22334433 4455555544 5567899986 4556999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecCh
Q 048718 660 KRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPV 739 (1118)
Q Consensus 660 QRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~ 739 (1118)
||++|||||+++|+|||||||||+||+.+...|.+.|+++. +|+|+|+|+|+++. ...+|+|+||++ |+|+++|++
T Consensus 1224 QriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~-G~IvE~Gth 1299 (1321)
T 4f4c_A 1224 QRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVSN-GTIIEKGTH 1299 (1321)
T ss_dssp HHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEESS-SSEEEEECH
T ss_pred HHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999999999998754 58999999999984 368999999975 699999999
Q ss_pred hhHHH
Q 048718 740 KKVEE 744 (1118)
Q Consensus 740 ~~l~~ 744 (1118)
+++.+
T Consensus 1300 ~eLl~ 1304 (1321)
T 4f4c_A 1300 TQLMS 1304 (1321)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99863
No 44
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.1e-37 Score=346.55 Aligned_cols=199 Identities=22% Similarity=0.372 Sum_probs=152.8
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEE
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGF 591 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 591 (1118)
.++++||++.+ +++|+||||+|++||+++|+||||||||||||+|+|+++ |++|+|.++| .|+|
T Consensus 40 ~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g----------~i~~ 103 (290)
T 2bbs_A 40 SLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG----------RISF 103 (290)
T ss_dssp ----------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS----------CEEE
T ss_pred eEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC----------EEEE
Confidence 58899999842 579999999999999999999999999999999999998 6899999998 3899
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCccCCCCCHHHHHHHHH
Q 048718 592 VPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRD-------SLVGTVEKRGISGGQRKRVNV 664 (1118)
Q Consensus 592 V~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~d-------t~vg~~~~rgLSGGERQRVsI 664 (1118)
|||++.+++. ||+||+. +.. .... .++++++.+++.+..+ +.++. .+..|||||||||+|
T Consensus 104 v~Q~~~l~~~-tv~enl~-~~~------~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~QRv~l 170 (290)
T 2bbs_A 104 CSQNSWIMPG-TIKENII-GVS------YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARISL 170 (290)
T ss_dssp ECSSCCCCSS-BHHHHHH-TTC------CCHH----HHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHHHH
T ss_pred EeCCCccCcc-cHHHHhh-Ccc------cchH----HHHHHHHHhChHHHHHhccccccchhcC-ccCcCCHHHHHHHHH
Confidence 9999988875 9999997 321 1111 2334555555543322 22221 235699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHH
Q 048718 665 GLEMVMEPSLLILDEPTSGLDSSSSQLLLRAL-RREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVE 743 (1118)
Q Consensus 665 ArALl~~P~lLlLDEPTsGLD~~sa~~i~~~L-r~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~ 743 (1118)
||||+.+|+||||||||+|||+.++..+++.| +++. +|+|||++||+++. + ..+|++++|.+ |++++.|+++++.
T Consensus 171 AraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~-~-~~~d~i~~l~~-G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 171 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHE-GSSYFYGTFSELQ 246 (290)
T ss_dssp HHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHH-H-HHSSEEEEEET-TEEEEEECHHHHH
T ss_pred HHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHH-H-HcCCEEEEEEC-CeEEEeCCHHHHh
Confidence 99999999999999999999999999999964 4443 58999999999865 3 46999999976 6899999998764
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.8e-37 Score=404.57 Aligned_cols=216 Identities=25% Similarity=0.431 Sum_probs=185.9
Q ss_pred eEEEEEeEEEEEcC-CcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhc
Q 048718 511 IEVAFKDLTITLKG-KNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYK 586 (1118)
Q Consensus 511 ~~l~~knLs~~~~~-~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r 586 (1118)
..|+|+||+|+|+. .++++|+||||+|++||.+||+||||||||||+++|.|+++ |.+|+|.+||.++. ...+|
T Consensus 414 g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~--~~~G~I~idG~~i~~~~~~~lr 491 (1321)
T 4f4c_A 414 GDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD--VLKGKITIDGVDVRDINLEFLR 491 (1321)
T ss_dssp CCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC--CSEEEEEETTEETTTSCHHHHH
T ss_pred CcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccc--cccCcccCCCccchhccHHHHh
Confidence 46999999999974 34689999999999999999999999999999999999998 68999999999864 35688
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCCCCCHHHH
Q 048718 587 RIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLG-------LQHIRDSLVGTVEKRGISGGQR 659 (1118)
Q Consensus 587 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lg-------L~~~~dt~vg~~~~rgLSGGER 659 (1118)
+.||||+|++.+|.. ||+|||.|+.. ...+++ +.++++..+ |.+..+|.+|+ ....||||||
T Consensus 492 ~~i~~v~Q~~~Lf~~-TI~eNI~~g~~-----~~~~~~----v~~a~~~a~l~~~i~~lp~G~~T~vGe-~G~~LSGGQk 560 (1321)
T 4f4c_A 492 KNVAVVSQEPALFNC-TIEENISLGKE-----GITREE----MVAACKMANAEKFIKTLPNGYNTLVGD-RGTQLSGGQK 560 (1321)
T ss_dssp HHEEEECSSCCCCSE-EHHHHHHTTCT-----TCCHHH----HHHHHHHTTCHHHHHHSTTTTSSEESS-SSCCCCHHHH
T ss_pred hcccccCCcceeeCC-chhHHHhhhcc-----cchHHH----HHHHHHHccchhHHHcCCCCCccEecC-CCCCCCHHHH
Confidence 899999999999964 99999998742 223333 344444433 45677899997 4456999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecCh
Q 048718 660 KRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPV 739 (1118)
Q Consensus 660 QRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~ 739 (1118)
||++|||||+++|+|||||||||+||+.++..+.+.|+++. +|+|+|+|+|+++. .+.+|+|++|++ |+|++.|+.
T Consensus 561 QRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls~--i~~aD~Iivl~~-G~ive~Gth 636 (1321)
T 4f4c_A 561 QRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLST--IRNADLIISCKN-GQVVEVGDH 636 (1321)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTTT--TTTCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHHH--HHhCCEEEEeeC-CeeeccCCH
Confidence 99999999999999999999999999999999999998875 58999999999984 478999999976 699999999
Q ss_pred hhHH
Q 048718 740 KKVE 743 (1118)
Q Consensus 740 ~~l~ 743 (1118)
+++.
T Consensus 637 ~eL~ 640 (1321)
T 4f4c_A 637 RALM 640 (1321)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.1e-36 Score=396.38 Aligned_cols=218 Identities=27% Similarity=0.462 Sum_probs=181.5
Q ss_pred eEEEEEeEEEEEcCC-cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhc
Q 048718 511 IEVAFKDLTITLKGK-NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYK 586 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~-~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r 586 (1118)
..|+++||+++|+++ ++++|+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++. ...+|
T Consensus 386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~--~~~G~i~i~g~~i~~~~~~~~r 463 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD--PLDGMVSIDGQDIRTINVRYLR 463 (1284)
T ss_dssp CCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC--CSEEEEEETTEEGGGSCHHHHH
T ss_pred CeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEHHhCCHHHHH
Confidence 469999999999643 3579999999999999999999999999999999999998 68999999999864 34577
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 048718 587 RIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLV-----VERVIESLGLQHIRDSLVGTVEKRGISGGQRKR 661 (1118)
Q Consensus 587 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~-----v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQR 661 (1118)
+.||||+|++.+|+. ||+|||.|+.. ....++..+. +++.++. |.+..++.+|+ .+..||||||||
T Consensus 464 ~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~~~~~~~~~~~~~~~~~~~i~~--l~~g~~t~~~~-~g~~LSgGq~Qr 534 (1284)
T 3g5u_A 464 EIIGVVSQEPVLFAT-TIAENIRYGRE-----DVTMDEIEKAVKEANAYDFIMK--LPHQFDTLVGE-RGAQLSGGQKQR 534 (1284)
T ss_dssp HHEEEECSSCCCCSS-CHHHHHHHHCS-----SCCHHHHHHHHHHTTCHHHHHH--STTGGGCCCSS-SSCSSCHHHHHH
T ss_pred hheEEEcCCCccCCc-cHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHHh--ccccccccccC-CCCccCHHHHHH
Confidence 889999999999976 99999999742 1223222111 1223332 34556777875 456799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhh
Q 048718 662 VNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKK 741 (1118)
Q Consensus 662 VsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~ 741 (1118)
|+|||||+++|+||||||||++||+.++..+.+.|+.+. +|+|+|+++|+++. + ..+|++++|++ |++++.|+.++
T Consensus 535 iaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-i-~~~d~i~vl~~-G~i~~~g~~~~ 610 (1284)
T 3g5u_A 535 IAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLST-V-RNADVIAGFDG-GVIVEQGNHDE 610 (1284)
T ss_dssp HHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHH-H-TTCSEEEECSS-SCCCCEECHHH
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEEC-CEEEEECCHHH
Confidence 999999999999999999999999999999999998764 58999999999875 3 56999999975 69999999988
Q ss_pred HH
Q 048718 742 VE 743 (1118)
Q Consensus 742 l~ 743 (1118)
+.
T Consensus 611 l~ 612 (1284)
T 3g5u_A 611 LM 612 (1284)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=6.1e-36 Score=389.32 Aligned_cols=218 Identities=24% Similarity=0.439 Sum_probs=182.0
Q ss_pred eEEEEEeEEEEEcCC-cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhc
Q 048718 511 IEVAFKDLTITLKGK-NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYK 586 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~-~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r 586 (1118)
..++++||+++|++. +.++|+||||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++. ...+|
T Consensus 1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~i~~~~~~~~r 1106 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKEIKQLNVQWLR 1106 (1284)
T ss_dssp CCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSCTTSSCHHHHT
T ss_pred CcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEEcccCCHHHHH
Confidence 469999999999643 3479999999999999999999999999999999999998 68999999998764 34578
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCCCCCHHHH
Q 048718 587 RIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLG-------LQHIRDSLVGTVEKRGISGGQR 659 (1118)
Q Consensus 587 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lg-------L~~~~dt~vg~~~~rgLSGGER 659 (1118)
+.|+||||++.+|+ .||+|||.++... .....++ +.+.++..+ +.+..|+.+|+ ....||||||
T Consensus 1107 ~~i~~v~Q~~~l~~-~ti~eNi~~~~~~---~~~~~~~----i~~~~~~~~~~~~i~~l~~gldt~vge-~G~~LSgGq~ 1177 (1284)
T 3g5u_A 1107 AQLGIVSQEPILFD-CSIAENIAYGDNS---RVVSYEE----IVRAAKEANIHQFIDSLPDKYNTRVGD-KGTQLSGGQK 1177 (1284)
T ss_dssp TSCEEEESSCCCCS-SBHHHHHTCCCSS---CCCCHHH----HHHHHHHHTCHHHHSSTTTGGGCBCST-TSCSSCHHHH
T ss_pred hceEEECCCCcccc-ccHHHHHhccCCC---CCCCHHH----HHHHHHHhCcHHHHHhCccccccccCC-CCCccCHHHH
Confidence 89999999998885 6999999876321 1223333 223333333 45567788885 5567999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecCh
Q 048718 660 KRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPV 739 (1118)
Q Consensus 660 QRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~ 739 (1118)
|||+|||||+++|+||||||||+|||+.++..+.+.|+++ .+|+|+|+++|+++. + ..+|++++|.+ |++++.|++
T Consensus 1178 Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~~-G~i~~~g~~ 1253 (1284)
T 3g5u_A 1178 QRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQN-GKVKEHGTH 1253 (1284)
T ss_dssp HHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEET-BEEEEEECH
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-HcCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999999999999999999999999874 468999999999986 3 56999999976 799999999
Q ss_pred hhHH
Q 048718 740 KKVE 743 (1118)
Q Consensus 740 ~~l~ 743 (1118)
+++.
T Consensus 1254 ~~l~ 1257 (1284)
T 3g5u_A 1254 QQLL 1257 (1284)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.6e-34 Score=350.19 Aligned_cols=206 Identities=24% Similarity=0.308 Sum_probs=176.7
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEE
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIG 590 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 590 (1118)
..++++||++.|.+ ..|++++|+|++||+++|+||||||||||||+|+|+++ |++|+|.+ +..||
T Consensus 356 ~~l~~~~l~~~~~~---~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~----------~~~i~ 420 (607)
T 3bk7_A 356 TLVEYPRLVKDYGS---FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKVEW----------DLTVA 420 (607)
T ss_dssp EEEEECCEEEECSS---CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBSCCCC----------CCCEE
T ss_pred eEEEEeceEEEecc---eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEE----------eeEEE
Confidence 56899999999842 47999999999999999999999999999999999998 68999875 24699
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
|+||+..+.+.+||.|++.+...... ....+++++++.+||.+..++.+++ |||||||||+||+||+.
T Consensus 421 ~v~Q~~~~~~~~tv~e~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~-----LSGGe~QRv~iAraL~~ 488 (607)
T 3bk7_A 421 YKPQYIKAEYEGTVYELLSKIDSSKL-------NSNFYKTELLKPLGIIDLYDRNVED-----LSGGELQRVAIAATLLR 488 (607)
T ss_dssp EECSSCCCCCSSBHHHHHHHHHHHHH-------HCHHHHHHTHHHHTCTTTTTSBGGG-----CCHHHHHHHHHHHHHTS
T ss_pred EEecCccCCCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCCchHhcCChhh-----CCHHHHHHHHHHHHHHh
Confidence 99999888788999998876411110 1124578899999999888888876 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEEcCCcHHHHhccCcEEEEec-CcEEEEecChhhHHH
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREA-LEGVNICTVVHQPSYALFRMFDDLILLAK-GGVIVYHGPVKKVEE 744 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la-~~G~TIIvvtHq~~~~i~~~~D~vivL~~-GG~iv~~G~~~~l~~ 744 (1118)
+|+||||||||+|||+.++..+++.|++++ +.|.|||++|||++. +..++|++++|.+ .|+++..|+++++..
T Consensus 489 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~-~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM-IDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-HHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999999999999999999997 469999999999876 4578999999973 256778899987754
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.9e-34 Score=345.44 Aligned_cols=206 Identities=24% Similarity=0.312 Sum_probs=176.1
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEE
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIG 590 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 590 (1118)
..++++||++.|.+ ..|+++||+|++||+++|+||||||||||||+|+|+++ |++|+|.+ ...||
T Consensus 286 ~~l~~~~l~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~----------~~~i~ 350 (538)
T 1yqt_A 286 TLVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKIEW----------DLTVA 350 (538)
T ss_dssp EEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBCCCCC----------CCCEE
T ss_pred eEEEEeeEEEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEE----------CceEE
Confidence 56899999999842 47999999999999999999999999999999999998 68999875 24699
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
||+|+..+.+.+||.|++......... ..+.++++++.+||.+..++.+++ |||||||||+||++|+.
T Consensus 351 ~v~Q~~~~~~~~tv~~~~~~~~~~~~~-------~~~~~~~~l~~~~l~~~~~~~~~~-----LSGGe~qrv~lAraL~~ 418 (538)
T 1yqt_A 351 YKPQYIKADYEGTVYELLSKIDASKLN-------SNFYKTELLKPLGIIDLYDREVNE-----LSGGELQRVAIAATLLR 418 (538)
T ss_dssp EECSSCCCCCSSBHHHHHHHHHHHHHT-------CHHHHHHTTTTTTCGGGTTSBGGG-----CCHHHHHHHHHHHHHTS
T ss_pred EEecCCcCCCCCcHHHHHHhhhccCCC-------HHHHHHHHHHHcCChhhhcCChhh-----CCHHHHHHHHHHHHHHh
Confidence 999998877889999988754111110 123578899999998888888876 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEec-CcEEEEecChhhHHH
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAK-GGVIVYHGPVKKVEE 744 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~-GG~iv~~G~~~~l~~ 744 (1118)
+|+||||||||+|||+.++.++++.|+++++ .|.|||++|||+++ +..++|++++|.+ .|+++..|+++++..
T Consensus 419 ~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~-~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM-IDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHH-HHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 9999999999999999999999999999874 59999999999876 4578999999974 257788899987754
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=8.4e-34 Score=339.57 Aligned_cols=207 Identities=21% Similarity=0.327 Sum_probs=173.7
Q ss_pred ceEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeE
Q 048718 510 TIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRII 589 (1118)
Q Consensus 510 ~~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~I 589 (1118)
...++++|+++.|.+ ..|+++|++|++||+++|+||||||||||||+|+|+++ |++|+|.++| ..+
T Consensus 267 ~~~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~---------~~i 332 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEK---------QIL 332 (538)
T ss_dssp CEEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSC---------CCE
T ss_pred cceEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECC---------eee
Confidence 356889999999842 56888899999999999999999999999999999998 6899998764 358
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 048718 590 GFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMV 669 (1118)
Q Consensus 590 gyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl 669 (1118)
+|++|+......+||.||+.+...... .. ....++++++.+||.+..++.+++ |||||||||+|||||+
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~----~~--~~~~~~~~l~~~~l~~~~~~~~~~-----LSGGq~QRv~iAraL~ 401 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDAL----ST--SSWFFEEVTKRLNLHRLLESNVND-----LSGGELQKLYIAATLA 401 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTT----CT--TSHHHHHTTTTTTGGGCTTSBGGG-----CCHHHHHHHHHHHHHH
T ss_pred EeechhcccccCCCHHHHHHHhhhhcc----ch--hHHHHHHHHHHcCCHHHhcCChhh-----CCHHHHHHHHHHHHHH
Confidence 999999777678899999987422110 01 123468899999999988888876 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEecC-cEEEEecChhhH
Q 048718 670 MEPSLLILDEPTSGLDSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAKG-GVIVYHGPVKKV 742 (1118)
Q Consensus 670 ~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~G-G~iv~~G~~~~l 742 (1118)
.+|+||||||||+|||+.++.++++.|+++++ .|.|||+||||+++ +..++|++++|..+ |.....+++.++
T Consensus 402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~-~~~~aDri~vl~~~~~~~~~~~~~~~~ 475 (538)
T 3ozx_A 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSI-HDYIADRIIVFKGEPEKAGLATSPVTL 475 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-HHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEeCCcceeccCCChHHH
Confidence 99999999999999999999999999999975 59999999999976 45789999999742 345556666544
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-33 Score=335.76 Aligned_cols=203 Identities=20% Similarity=0.236 Sum_probs=168.2
Q ss_pred EeEEEEEcCCcceeeeeeEEEEeCC-----eEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEE
Q 048718 516 KDLTITLKGKNKHLMRSVTGKLSPG-----RVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIG 590 (1118)
Q Consensus 516 knLs~~~~~~~k~IL~nVSl~I~~G-----Ei~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 590 (1118)
+++++.|+ ..+.+|+++||++.+| |+++|+||||||||||||+|+|+++ |++|+. . .+..++
T Consensus 350 ~~~~~~y~-~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~--p~~G~~------~----~~~~i~ 416 (608)
T 3j16_B 350 ASRAFSYP-SLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK--PDEGQD------I----PKLNVS 416 (608)
T ss_dssp SSSCCEEC-CEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC--CSBCCC------C----CSCCEE
T ss_pred cceeEEec-CcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC--CCCCcC------c----cCCcEE
Confidence 45667774 2346899999999999 7899999999999999999999998 578852 1 134699
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
|++|+.......||+|++..... ..... ...++++++.++|.+..++.+++ |||||||||+|||||+.
T Consensus 417 ~~~q~~~~~~~~tv~e~~~~~~~----~~~~~---~~~~~~~l~~l~l~~~~~~~~~~-----LSGGqkQRv~iAraL~~ 484 (608)
T 3j16_B 417 MKPQKIAPKFPGTVRQLFFKKIR----GQFLN---PQFQTDVVKPLRIDDIIDQEVQH-----LSGGELQRVAIVLALGI 484 (608)
T ss_dssp EECSSCCCCCCSBHHHHHHHHCS----STTTS---HHHHHHTHHHHTSTTTSSSBSSS-----CCHHHHHHHHHHHHTTS
T ss_pred EecccccccCCccHHHHHHHHhh----ccccc---HHHHHHHHHHcCChhhhcCChhh-----CCHHHHHHHHHHHHHHh
Confidence 99999776667899998764321 11111 23467899999999999988876 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEEcCCcHHHHhccCcEEEEec-CcEEEEecChhhHHH
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREA-LEGVNICTVVHQPSYALFRMFDDLILLAK-GGVIVYHGPVKKVEE 744 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la-~~G~TIIvvtHq~~~~i~~~~D~vivL~~-GG~iv~~G~~~~l~~ 744 (1118)
+|+||||||||+|||+.++.++++.|++++ +.|.|||++|||+++ +..++|++++|.+ .|+++..|+++++..
T Consensus 485 ~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~-~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIM-ATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp CCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHH-HHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 999999999999999999999999999987 459999999999976 4578999999975 268899999988753
No 52
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.98 E-value=8.1e-33 Score=339.17 Aligned_cols=207 Identities=23% Similarity=0.309 Sum_probs=140.1
Q ss_pred cceeeeeeEEEEeCCeEEEEECCCCCcHHHHH---------------------HHHHcCCCCCCc-------eeEEEECC
Q 048718 526 NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFL---------------------SALKGRVPGCIM-------SGTILVNG 577 (1118)
Q Consensus 526 ~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLL---------------------kiLaGl~~~~~~-------sG~I~inG 577 (1118)
.+++|+||||+|++||+++|+||||||||||| ++|.|+.. ++ .|.|.++|
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~--~~~~~i~~~~~~i~~~~ 107 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK--PDVDAIEGLSPAISIDQ 107 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC----------------CCCSEEESCCCEEEESS
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc--CCccceeccccceEecC
Confidence 35799999999999999999999999999998 88888776 34 56677777
Q ss_pred EecChhhhcCeEEEEcCCCC-------------------CCCCCCHHHHHHHHHhhccCCCCCHHHHH------HHHHHH
Q 048718 578 KVASIQSYKRIIGFVPQDDI-------------------VHGNLTVEENLWFSARCRLSADLPKAEKV------LVVERV 632 (1118)
Q Consensus 578 ~~~~~~~~r~~IgyV~Qd~~-------------------l~~~LTV~EnL~f~a~lr~~~~~~~~~~~------~~v~~l 632 (1118)
.+... ..++.+|||+|... .++.+||+||+.+......... ...... .....+
T Consensus 108 ~~~~~-~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 185 (670)
T 3ux8_A 108 KTTSR-NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGF 185 (670)
T ss_dssp CC------CCBHHHHTTCC-------------------------CC---------------------------CHHHHHH
T ss_pred chhhc-cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHH
Confidence 54321 12344555555433 2457899999988533221110 000000 111245
Q ss_pred HHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Q 048718 633 IESLGLQHI-RDSLVGTVEKRGISGGQRKRVNVGLEMVMEPS--LLILDEPTSGLDSSSSQLLLRALRREALEGVNICTV 709 (1118)
Q Consensus 633 L~~lgL~~~-~dt~vg~~~~rgLSGGERQRVsIArALl~~P~--lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvv 709 (1118)
++.+||.+. .++++++ |||||||||+|||||+.+|+ ||||||||+|||+.++..+++.|++++++|.|||+|
T Consensus 186 l~~~gL~~~~~~~~~~~-----LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~v 260 (670)
T 3ux8_A 186 LQNVGLDYLTLSRSAGT-----LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVV 260 (670)
T ss_dssp HHHTTCTTCCTTCBGGG-----SCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHcCCchhhhcCCccc-----CCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 888999875 6788776 99999999999999999998 999999999999999999999999998889999999
Q ss_pred EcCCcHHHHhccCcEEEEe-----cCcEEEEecChhhHH
Q 048718 710 VHQPSYALFRMFDDLILLA-----KGGVIVYHGPVKKVE 743 (1118)
Q Consensus 710 tHq~~~~i~~~~D~vivL~-----~GG~iv~~G~~~~l~ 743 (1118)
|||++. + ..+|++++|. ++|++++.|+++++.
T Consensus 261 tHd~~~-~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 261 EHDEDT-M-LAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp CCCHHH-H-HHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred eCCHHH-H-hhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 999874 3 5699999992 357899999998764
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.98 E-value=3e-33 Score=338.94 Aligned_cols=192 Identities=24% Similarity=0.258 Sum_probs=158.4
Q ss_pred EeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEE---------EECCEecCh---h
Q 048718 516 KDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTI---------LVNGKVASI---Q 583 (1118)
Q Consensus 516 knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I---------~inG~~~~~---~ 583 (1118)
+||+++|.+ ...+|+|+| +|++||+++|+||||||||||||+|+|+++ |++|++ .++|.++.. .
T Consensus 95 ~~ls~~yg~-~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~--p~~G~~~~~~~~~~~~~~G~~~~~~~~~ 170 (607)
T 3bk7_A 95 EDCVHRYGV-NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI--PNLCEDNDSWDNVIRAFRGNELQNYFER 170 (607)
T ss_dssp GSEEEECST-TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC--CCTTTTCCCHHHHHHHTTTSTHHHHHHH
T ss_pred CCeEEEECC-CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC--CCCCccccccchhhheeCCEehhhhhhh
Confidence 788999942 225999999 999999999999999999999999999998 578885 456654321 0
Q ss_pred --hhcCeEEEEcCCCCCCC---CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH
Q 048718 584 --SYKRIIGFVPQDDIVHG---NLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQ 658 (1118)
Q Consensus 584 --~~r~~IgyV~Qd~~l~~---~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGE 658 (1118)
..+..+++++|....++ ..||.|++... .. .++++++++.+||.+..++.+++ |||||
T Consensus 171 ~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~------~~------~~~~~~~L~~lgL~~~~~~~~~~-----LSGGe 233 (607)
T 3bk7_A 171 LKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV------DE------VGKFEEVVKELELENVLDRELHQ-----LSGGE 233 (607)
T ss_dssp HHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT------CC------SSCHHHHHHHTTCTTGGGSBGGG-----CCHHH
T ss_pred hhhhhcceEEeechhhhchhhccccHHHHhhhh------HH------HHHHHHHHHHcCCCchhCCChhh-----CCHHH
Confidence 12345889999754322 23999998641 11 12467899999999999998876 99999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEec
Q 048718 659 RKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAK 729 (1118)
Q Consensus 659 RQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~ 729 (1118)
||||+||+||+.+|+||||||||+|||+.++..+++.|++++++|.|||+++||++. +..++|++++|.+
T Consensus 234 kQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~-~~~~adri~vl~~ 303 (607)
T 3bk7_A 234 LQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAV-LDYLSDVIHVVYG 303 (607)
T ss_dssp HHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-HHHHCSEEEEEES
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHH-HHhhCCEEEEECC
Confidence 999999999999999999999999999999999999999998789999999999875 4578999999964
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.98 E-value=5.6e-33 Score=332.71 Aligned_cols=192 Identities=22% Similarity=0.250 Sum_probs=158.2
Q ss_pred EeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEE---------EECCEecCh---h
Q 048718 516 KDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTI---------LVNGKVASI---Q 583 (1118)
Q Consensus 516 knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I---------~inG~~~~~---~ 583 (1118)
+||+++|.+ ...+|+||| +|++||+++|+||||||||||||+|+|+++ |++|++ .++|.++.. .
T Consensus 25 ~~ls~~yg~-~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~--p~~G~~~~~~~~~~~~~~g~~~~~~~~~ 100 (538)
T 1yqt_A 25 EDCVHRYGV-NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI--PNLCGDNDSWDGVIRAFRGNELQNYFEK 100 (538)
T ss_dssp CCEEEECST-TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC--CCTTTTCCSHHHHHHHTTTSTHHHHHHH
T ss_pred cCcEEEECC-ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCccCcchhhhHHhhCCccHHHHHHH
Confidence 478999942 225899999 999999999999999999999999999997 578885 356654321 1
Q ss_pred --hhcCeEEEEcCCCCCCCC---CCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH
Q 048718 584 --SYKRIIGFVPQDDIVHGN---LTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQ 658 (1118)
Q Consensus 584 --~~r~~IgyV~Qd~~l~~~---LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGE 658 (1118)
..+..+++++|+...++. .||.|++.... . .++++++++.+||.+..++++++ |||||
T Consensus 101 ~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~------~------~~~~~~~l~~lgl~~~~~~~~~~-----LSgGe 163 (538)
T 1yqt_A 101 LKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD------E------TGKLEEVVKALELENVLEREIQH-----LSGGE 163 (538)
T ss_dssp HHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC------S------SSCHHHHHHHTTCTTTTTSBGGG-----CCHHH
T ss_pred HHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh------H------HHHHHHHHHHcCCChhhhCChhh-----CCHHH
Confidence 123458999997544332 38999885311 0 12467899999999888888876 99999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEec
Q 048718 659 RKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAK 729 (1118)
Q Consensus 659 RQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~ 729 (1118)
||||+||+||+.+|+||||||||++||+.++..+++.|++++++|.|||+|||+++. +.+++|++++|.+
T Consensus 164 kQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~-~~~~~dri~vl~~ 233 (538)
T 1yqt_A 164 LQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAV-LDYLSDIIHVVYG 233 (538)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-HHHHCSEEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEcC
Confidence 999999999999999999999999999999999999999998789999999999875 5678999999964
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=2.7e-31 Score=333.19 Aligned_cols=200 Identities=19% Similarity=0.331 Sum_probs=165.5
Q ss_pred ceEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeE
Q 048718 510 TIEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRII 589 (1118)
Q Consensus 510 ~~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~I 589 (1118)
+..+...|+++.|+ ++.+|+|+||+|++||+++|+||||||||||||+|+| |+| +|.+.. . +..+
T Consensus 433 ~~~L~~~~ls~~yg--~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~~-~--~~~~ 497 (986)
T 2iw3_A 433 GEDLCNCEFSLAYG--AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPTQ-E--ECRT 497 (986)
T ss_dssp SCEEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCCT-T--TSCE
T ss_pred cceeEEeeEEEEEC--CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCccc-c--ceeE
Confidence 45677779999994 4689999999999999999999999999999999995 222 343321 1 1247
Q ss_pred EEEcCCC-CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHHHHHHH
Q 048718 590 GFVPQDD-IVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-HIRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 590 gyV~Qd~-~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-~~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
+|++|+. .+++.+||.||+.+ .. . .. +.+++++++.+||. +..++++++ |||||||||+|||+
T Consensus 498 ~~v~q~~~~~~~~ltv~e~l~~--~~--~-~~-----~~~v~~~L~~lgL~~~~~~~~~~~-----LSGGqkQRvaLArA 562 (986)
T 2iw3_A 498 VYVEHDIDGTHSDTSVLDFVFE--SG--V-GT-----KEAIKDKLIEFGFTDEMIAMPISA-----LSGGWKMKLALARA 562 (986)
T ss_dssp EETTCCCCCCCTTSBHHHHHHT--TC--S-SC-----HHHHHHHHHHTTCCHHHHHSBGGG-----CCHHHHHHHHHHHH
T ss_pred EEEcccccccccCCcHHHHHHH--hh--c-CH-----HHHHHHHHHHcCCChhhhcCCccc-----CCHHHHHHHHHHHH
Confidence 8999984 67888999999976 11 1 11 34688999999995 677888876 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEE-EecChhhHHH
Q 048718 668 MVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIV-YHGPVKKVEE 744 (1118)
Q Consensus 668 Ll~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv-~~G~~~~l~~ 744 (1118)
|+.+|+||||||||+|||+.++..+.+.|++ .|.|||++||+.+. +.+++|++++|.+ |+++ +.|+.+++..
T Consensus 563 L~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~~-l~~~adrii~L~~-G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 563 VLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSVF-LDNVCEYIINYEG-LKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHHH-HHHHCSEEEEEET-TEEEEEESCHHHHHH
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHHH-HHHhCCEEEEEEC-CeeecCCCCHHHHHh
Confidence 9999999999999999999999999999987 68999999999875 5678999999976 5775 7899887643
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=3.9e-32 Score=340.86 Aligned_cols=208 Identities=24% Similarity=0.359 Sum_probs=162.4
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEE
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIG 590 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 590 (1118)
..|+++||+++|++.++++|+||||+|++||+++|+||||||||||||+|+|+++ |++|+|.++|. ..|+
T Consensus 670 ~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~--P~sG~I~~~~~--------~~I~ 739 (986)
T 2iw3_A 670 AIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL--PTSGEVYTHEN--------CRIA 739 (986)
T ss_dssp EEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC--CSEEEEEECTT--------CCEE
T ss_pred ceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEcCc--------cceE
Confidence 4599999999996434679999999999999999999999999999999999998 68999999862 2488
Q ss_pred EEcCCCCC----CCCCCHHHHHHHHHhhcc-------------C------------------------------------
Q 048718 591 FVPQDDIV----HGNLTVEENLWFSARCRL-------------S------------------------------------ 617 (1118)
Q Consensus 591 yV~Qd~~l----~~~LTV~EnL~f~a~lr~-------------~------------------------------------ 617 (1118)
|++|++.+ ....|+.|++.+...... +
T Consensus 740 yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~ 819 (986)
T 2iw3_A 740 YIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYEC 819 (986)
T ss_dssp EECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEE
T ss_pred eeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhh
Confidence 88887532 224678887765321000 0
Q ss_pred ---------------CCC--------C--------------------------HHHHHHHHHHHHHHcCCCc-c-ccccc
Q 048718 618 ---------------ADL--------P--------------------------KAEKVLVVERVIESLGLQH-I-RDSLV 646 (1118)
Q Consensus 618 ---------------~~~--------~--------------------------~~~~~~~v~~lL~~lgL~~-~-~dt~v 646 (1118)
..+ + ......+++++++.+||.+ . .++++
T Consensus 820 ~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~ 899 (986)
T 2iw3_A 820 SFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRI 899 (986)
T ss_dssp EEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCG
T ss_pred hhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCc
Confidence 000 0 0001245788999999975 3 56677
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEE
Q 048718 647 GTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLIL 726 (1118)
Q Consensus 647 g~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~viv 726 (1118)
++ |||||||||+|||+|+.+|+||||||||+|||+.+...+++.|+++ |.|||++||+.+. +.+++|++++
T Consensus 900 ~~-----LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e~-v~~l~DrViv 970 (986)
T 2iw3_A 900 RG-----LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAEF-TKNLTEEVWA 970 (986)
T ss_dssp GG-----CCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHHH-HTTTCCEEEC
T ss_pred cc-----cCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHHH-HHHhCCEEEE
Confidence 65 9999999999999999999999999999999999999998888654 6799999999875 4578999999
Q ss_pred EecCcEEEEecC
Q 048718 727 LAKGGVIVYHGP 738 (1118)
Q Consensus 727 L~~GG~iv~~G~ 738 (1118)
|.+ |+++..|+
T Consensus 971 L~~-G~Iv~~G~ 981 (986)
T 2iw3_A 971 VKD-GRMTPSGH 981 (986)
T ss_dssp CBT-TBCCC---
T ss_pred EEC-CEEEEeCC
Confidence 976 67877664
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=4.1e-31 Score=324.09 Aligned_cols=199 Identities=28% Similarity=0.374 Sum_probs=150.1
Q ss_pred cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHH----------------------cCCCCCCceeEEEECCEecChh
Q 048718 526 NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALK----------------------GRVPGCIMSGTILVNGKVASIQ 583 (1118)
Q Consensus 526 ~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLa----------------------Gl~~~~~~sG~I~inG~~~~~~ 583 (1118)
.+++|+||||+|++||+++|+||||||||||+++|. |+. +..|.|.++|.++...
T Consensus 334 ~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~---~~~~~i~~~~~~~~~~ 410 (670)
T 3ux8_A 334 REHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE---HLDKVIDIDQSPIGRT 410 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGG---GCSEEEECCSSCSCSS
T ss_pred cccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccc---ccCceeEeccccCCCC
Confidence 356899999999999999999999999999998764 222 1346788888654210
Q ss_pred h------h--------------------------------------cCeEEEEcCCCCCCC-------------------
Q 048718 584 S------Y--------------------------------------KRIIGFVPQDDIVHG------------------- 600 (1118)
Q Consensus 584 ~------~--------------------------------------r~~IgyV~Qd~~l~~------------------- 600 (1118)
. + ....|+++|+..+++
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (670)
T 3ux8_A 411 PRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETL 490 (670)
T ss_dssp TTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHH
T ss_pred CCcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhh
Confidence 0 0 011244444433322
Q ss_pred -------------CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHH
Q 048718 601 -------------NLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH-IRDSLVGTVEKRGISGGQRKRVNVGL 666 (1118)
Q Consensus 601 -------------~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~-~~dt~vg~~~~rgLSGGERQRVsIAr 666 (1118)
.+||.||+.|.... . ...++.+.++.+||.+ ..++++++ |||||||||+|||
T Consensus 491 ~~~~~~~~~~~~~~ltv~e~l~~~~~~-------~--~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgG~~qrv~iAr 556 (670)
T 3ux8_A 491 EVTYKGKNIAEVLDMTVEDALDFFASI-------P--KIKRKLETLYDVGLGYMKLGQPATT-----LSGGEAQRVKLAA 556 (670)
T ss_dssp TCCBTTBCHHHHHTSBHHHHHHHTTTC-------H--HHHHHHHHHHHTTCTTSBTTCCGGG-----CCHHHHHHHHHHH
T ss_pred heeecCCCHHHHhhCCHHHHHHHHHHh-------h--hHHHHHHHHHHcCCchhhccCCchh-----CCHHHHHHHHHHH
Confidence 47999999875321 1 1234567788899964 35666665 9999999999999
Q ss_pred HHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEe-----cCcEEEEecC
Q 048718 667 EMVMEP---SLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLA-----KGGVIVYHGP 738 (1118)
Q Consensus 667 ALl~~P---~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~-----~GG~iv~~G~ 738 (1118)
||+.+| +||||||||+|||+.++.++++.|++++++|+|||+||||++. + +.+|++++|. ++|++++.|+
T Consensus 557 aL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~-~-~~~d~i~~l~~~~g~~~G~i~~~g~ 634 (670)
T 3ux8_A 557 ELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDV-I-KTADYIIDLGPEGGDRGGQIVAVGT 634 (670)
T ss_dssp HHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH-H-TTCSEEEEEESSSGGGCCEEEEEEC
T ss_pred HHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-H-HhCCEEEEecCCcCCCCCEEEEecC
Confidence 999987 5999999999999999999999999998889999999999874 3 6799999993 3579999999
Q ss_pred hhhHH
Q 048718 739 VKKVE 743 (1118)
Q Consensus 739 ~~~l~ 743 (1118)
++++.
T Consensus 635 ~~~~~ 639 (670)
T 3ux8_A 635 PEEVA 639 (670)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98874
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.8e-30 Score=308.91 Aligned_cols=193 Identities=23% Similarity=0.244 Sum_probs=147.7
Q ss_pred eEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEE-----------ECCEecCh---
Q 048718 517 DLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTIL-----------VNGKVASI--- 582 (1118)
Q Consensus 517 nLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~-----------inG~~~~~--- 582 (1118)
|++++|.. ....|++++ .+++||+++|+||||||||||||+|+|+++ |++|+|. +.|.....
T Consensus 82 ~~~~~Y~~-~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~--P~~G~i~~~~~~~~~~~~~~g~~~~~~~~ 157 (608)
T 3j16_B 82 HVTHRYSA-NSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK--PNLGRFDDPPEWQEIIKYFRGSELQNYFT 157 (608)
T ss_dssp TEEEECST-TSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC--CCTTTTCCSSCHHHHHHHTTTSTHHHHHH
T ss_pred CeEEEECC-CceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC--CCCceEecccchhhhhheecChhhhhhhh
Confidence 46777742 345777777 689999999999999999999999999998 6889872 33322110
Q ss_pred hhhcCe--EEEEcCCCCC------CCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCC
Q 048718 583 QSYKRI--IGFVPQDDIV------HGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGI 654 (1118)
Q Consensus 583 ~~~r~~--IgyV~Qd~~l------~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgL 654 (1118)
....+. ..+.+|.... -+..++.+++.... ... ..+++++++.+||.+..++.+++ |
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~------~~~----~~~~~~~l~~~gl~~~~~~~~~~-----L 222 (608)
T 3j16_B 158 KMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM------EKS----PEDVKRYIKILQLENVLKRDIEK-----L 222 (608)
T ss_dssp HHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC------CSC----HHHHHHHHHHHTCTGGGGSCTTT-----C
T ss_pred HHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh------hhH----HHHHHHHHHHcCCcchhCCChHH-----C
Confidence 011112 2344443211 11235666654321 111 23578999999999999998876 9
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEec
Q 048718 655 SGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAK 729 (1118)
Q Consensus 655 SGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~ 729 (1118)
||||||||+||+||+.+|+||||||||+|||+.++..+.+.|++++++|+|||+++|+++. +..++|++++|..
T Consensus 223 SgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~-~~~~~drv~vl~~ 296 (608)
T 3j16_B 223 SGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSV-LDYLSDFVCIIYG 296 (608)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHH-HHHHCSEEEEEES
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999998789999999999976 5688999999964
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.96 E-value=9.5e-30 Score=304.60 Aligned_cols=189 Identities=23% Similarity=0.189 Sum_probs=143.9
Q ss_pred EEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEE-----------EECCEecCh---h
Q 048718 518 LTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTI-----------LVNGKVASI---Q 583 (1118)
Q Consensus 518 Ls~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I-----------~inG~~~~~---~ 583 (1118)
.+.+|.. +.--|.++.. +++||++||+||||||||||||+|+|+++ |++|+| .++|.++.. .
T Consensus 5 ~~~~~~~-~~f~l~~l~~-~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~--p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~ 80 (538)
T 3ozx_A 5 VIHRYKV-NGFKLFGLPT-PKNNTILGVLGKNGVGKTTVLKILAGEII--PNFGDPNSKVGKDEVLKRFRGKEIYNYFKE 80 (538)
T ss_dssp EEEESST-TSCEEECCCC-CCTTEEEEEECCTTSSHHHHHHHHTTSSC--CCTTCTTSCCCHHHHHHHHTTSTTHHHHHH
T ss_pred CceecCC-CceeecCCCC-CCCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCccccccchhhHHhhcCCeeHHHHHHH
Confidence 4556642 2223333332 36999999999999999999999999998 688988 566754321 0
Q ss_pred hh--cCeEEEEcCCCCCC---CCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH
Q 048718 584 SY--KRIIGFVPQDDIVH---GNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQ 658 (1118)
Q Consensus 584 ~~--r~~IgyV~Qd~~l~---~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGE 658 (1118)
.. ...+..+.|..... ...||.|++.... . +.+++++++.+||.+..++.+++ |||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~------~------~~~~~~~l~~l~l~~~~~~~~~~-----LSgGe 143 (538)
T 3ozx_A 81 LYSNELKIVHKIQYVEYASKFLKGTVNEILTKID------E------RGKKDEVKELLNMTNLWNKDANI-----LSGGG 143 (538)
T ss_dssp HHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC------C------SSCHHHHHHHTTCGGGTTSBGGG-----CCHHH
T ss_pred HhhcccchhhccchhhhhhhhccCcHHHHhhcch------h------HHHHHHHHHHcCCchhhcCChhh-----CCHHH
Confidence 01 12344555543221 2348888664210 0 12367889999999999988876 99999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEec
Q 048718 659 RKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAK 729 (1118)
Q Consensus 659 RQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~ 729 (1118)
||||+||+||+.+|+||||||||++||+.++..+.+.|+++++ |+|||+|+|+++. +..++|++++|.+
T Consensus 144 ~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~~-~~~~~d~i~vl~~ 212 (538)
T 3ozx_A 144 LQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLIV-LDYLTDLIHIIYG 212 (538)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHHH-HHHHCSEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChHH-HHhhCCEEEEecC
Confidence 9999999999999999999999999999999999999999865 9999999999975 5688999999964
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.95 E-value=2.7e-28 Score=305.74 Aligned_cols=201 Identities=24% Similarity=0.374 Sum_probs=152.6
Q ss_pred ceeeeeeEEEEeCCeEEEEECCCCCcHHHHH---------HHHHcCCCC-C---Cce------eEEEECCEecCh-----
Q 048718 527 KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFL---------SALKGRVPG-C---IMS------GTILVNGKVASI----- 582 (1118)
Q Consensus 527 k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLL---------kiLaGl~~~-~---~~s------G~I~inG~~~~~----- 582 (1118)
...|+|||++|++|++++|+|+||||||||+ +.+.+.... . +.+ +.|.+++.++..
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 4579999999999999999999999999997 444443321 0 122 335555443210
Q ss_pred -hh--------------------------------------hcCeEEEEcCCCCCCC-----------------------
Q 048718 583 -QS--------------------------------------YKRIIGFVPQDDIVHG----------------------- 600 (1118)
Q Consensus 583 -~~--------------------------------------~r~~IgyV~Qd~~l~~----------------------- 600 (1118)
.. ..+..||+.++..+++
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 00 0123577877766655
Q ss_pred ---------CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 601 ---------NLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHI-RDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 601 ---------~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~-~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
.+||.|++.|... .+ ...++.++|+.+||... .+..+.+ |||||||||+|||||+.
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~------~~---~~~~~~~~L~~vGL~~~~lgq~~~~-----LSGGErQRV~LAraL~~ 822 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKN------IP---SIKRTLQVLHDVGLGYVKLGQPATT-----LSGGEAQRIKLASELRK 822 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTT------CH---HHHHHHHHHHHTTGGGSBTTCCSTT-----CCHHHHHHHHHHHHHTS
T ss_pred ccCCHHHHhhCCHHHHHHHHhc------ch---hHHHHHHHHHHcCCchhhccCCccC-----CCHHHHHHHHHHHHHhh
Confidence 3688888887532 11 22356789999999753 3455544 99999999999999998
Q ss_pred CC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEe-----cCcEEEEecChhhH
Q 048718 671 EP---SLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLA-----KGGVIVYHGPVKKV 742 (1118)
Q Consensus 671 ~P---~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~-----~GG~iv~~G~~~~l 742 (1118)
+| +||||||||+|||+.+...+++.|++++++|.|||+|+|+++. + ..+|++++|. ++|++++.|+++++
T Consensus 823 ~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~-i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel 900 (916)
T 3pih_A 823 RDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDV-I-KNADHIIDLGPEGGKEGGYIVATGTPEEI 900 (916)
T ss_dssp CCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH-H-TTCSEEEEEESSSGGGCCEEEEEESHHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEecCCCCCCCCEEEEEcCHHHH
Confidence 75 7999999999999999999999999998889999999999864 3 6699999994 56899999999987
Q ss_pred H
Q 048718 743 E 743 (1118)
Q Consensus 743 ~ 743 (1118)
.
T Consensus 901 ~ 901 (916)
T 3pih_A 901 A 901 (916)
T ss_dssp H
T ss_pred H
Confidence 4
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.95 E-value=2.3e-28 Score=304.84 Aligned_cols=210 Identities=26% Similarity=0.364 Sum_probs=160.5
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHH-cCC---------CCCC---cee------
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALK-GRV---------PGCI---MSG------ 571 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLa-Gl~---------~~~~---~sG------ 571 (1118)
..|++++++ ...|+|||++|++||+++|+|+||||||||+++|. |.+ .+.. ..|
T Consensus 628 ~~L~v~~l~-------~~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 628 RWLEVVGAR-------EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp CEEEEEEEC-------SSSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred eEEEEecCc-------ccccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 357888874 23799999999999999999999999999999853 211 1111 124
Q ss_pred EEEECCEecCh--h-----------hh---------cCeEEEEcCCCCCC----------------------C-------
Q 048718 572 TILVNGKVASI--Q-----------SY---------KRIIGFVPQDDIVH----------------------G------- 600 (1118)
Q Consensus 572 ~I~inG~~~~~--~-----------~~---------r~~IgyV~Qd~~l~----------------------~------- 600 (1118)
.|.++|.++.. . .. .+.+||++|...+. +
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 58888876521 0 00 12357877753221 1
Q ss_pred -------------------------CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCC
Q 048718 601 -------------------------NLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH-IRDSLVGTVEKRGI 654 (1118)
Q Consensus 601 -------------------------~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~-~~dt~vg~~~~rgL 654 (1118)
.|||.|++.|... .. . ..++.++|+.+||.. ..++.+++ |
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~------~~-~--~~~~~~~L~~~gL~~~~l~~~~~~-----L 846 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS------IP-K--IKRKLETLYDVGLGYMKLGQPATT-----L 846 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS------CH-H--HHHHHHHHHHTTCSSSBTTCCGGG-----C
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc------ch-h--HHHHHHHHHHcCCCcccccCchhh-----C
Confidence 3678888876421 11 1 123568999999987 66777766 9
Q ss_pred CHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEe---
Q 048718 655 SGGQRKRVNVGLEMVMEP---SLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLA--- 728 (1118)
Q Consensus 655 SGGERQRVsIArALl~~P---~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~--- 728 (1118)
||||||||+||++|+.+| +||||||||+|||+.++..+++.|++++++|.|||+++|+++. + ..+|++++|.
T Consensus 847 SGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~-i-~~aDrIivL~p~g 924 (972)
T 2r6f_A 847 SGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDV-I-KTADYIIDLGPEG 924 (972)
T ss_dssp CHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH-H-TTCSEEEEECSSS
T ss_pred CHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH-H-HhCCEEEEEcCCC
Confidence 999999999999999865 9999999999999999999999999998889999999999875 3 6899999994
Q ss_pred --cCcEEEEecChhhHH
Q 048718 729 --KGGVIVYHGPVKKVE 743 (1118)
Q Consensus 729 --~GG~iv~~G~~~~l~ 743 (1118)
++|++++.|+++++.
T Consensus 925 G~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 925 GDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp TTSCCSEEEEESHHHHH
T ss_pred CCCCCEEEEecCHHHHH
Confidence 457999999998764
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.95 E-value=3.2e-28 Score=302.86 Aligned_cols=210 Identities=23% Similarity=0.347 Sum_probs=157.1
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHH-HHcCCC-------C----------------
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSA-LKGRVP-------G---------------- 566 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLki-LaGl~~-------~---------------- 566 (1118)
..|+++|+++ .+|+|||++|++||+++|+|+||||||||++. |+|++. +
T Consensus 501 ~~L~v~~l~~-------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~ 573 (842)
T 2vf7_A 501 GWLELNGVTR-------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGS 573 (842)
T ss_dssp CEEEEEEEEE-------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CC
T ss_pred ceEEEEeeee-------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccc
Confidence 4588999874 26999999999999999999999999999996 765431 1
Q ss_pred CCcee-------EEEECCEecChh-------------hhc---------CeEEEEcC----------------------C
Q 048718 567 CIMSG-------TILVNGKVASIQ-------------SYK---------RIIGFVPQ----------------------D 595 (1118)
Q Consensus 567 ~~~sG-------~I~inG~~~~~~-------------~~r---------~~IgyV~Q----------------------d 595 (1118)
.+.+| .|.++|.++... ..| +.+||.++ +
T Consensus 574 ~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~ 653 (842)
T 2vf7_A 574 ARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVE 653 (842)
T ss_dssp CEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEET
T ss_pred ccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchh
Confidence 12467 789998765210 011 11122221 1
Q ss_pred CCCC------------------------CC--------CCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCcc-c
Q 048718 596 DIVH------------------------GN--------LTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHI-R 642 (1118)
Q Consensus 596 ~~l~------------------------~~--------LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~-~ 642 (1118)
-.++ .. +||.|++.|.. . .. ...++.++|+.+||... .
T Consensus 654 ~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~------~-~~--~~~~~~~~L~~~gL~~~~l 724 (842)
T 2vf7_A 654 LLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFA------D-ES--AIFRALDTLREVGLGYLRL 724 (842)
T ss_dssp TCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT------T-SH--HHHHHHHHHHHTTCTTSBT
T ss_pred hhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhh------c-ch--HHHHHHHHHHHcCCCcccc
Confidence 1111 12 34555544421 1 11 12357899999999873 5
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHh
Q 048718 643 DSLVGTVEKRGISGGQRKRVNVGLEMVME---PSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFR 719 (1118)
Q Consensus 643 dt~vg~~~~rgLSGGERQRVsIArALl~~---P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~ 719 (1118)
++.+.+ |||||||||+||++|+.+ |+||||||||+|||+.+...+++.|++++++|.|||+++|+++. + +
T Consensus 725 ~~~~~~-----LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~-i-~ 797 (842)
T 2vf7_A 725 GQPATE-----LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQV-V-A 797 (842)
T ss_dssp TCCGGG-----CCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH-H-T
T ss_pred cCCccc-----CCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH-H-H
Confidence 666665 999999999999999996 79999999999999999999999999999889999999999875 4 7
Q ss_pred ccCcEEEEe-----cCcEEEEecChhhHH
Q 048718 720 MFDDLILLA-----KGGVIVYHGPVKKVE 743 (1118)
Q Consensus 720 ~~D~vivL~-----~GG~iv~~G~~~~l~ 743 (1118)
.+|++++|. ++|++++.|+++++.
T Consensus 798 ~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 798 ASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp TCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred hCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 899999994 467999999998763
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.95 E-value=9.5e-28 Score=300.25 Aligned_cols=210 Identities=23% Similarity=0.376 Sum_probs=157.6
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHH-c----CCCCC-Ccee-------------
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALK-G----RVPGC-IMSG------------- 571 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLa-G----l~~~~-~~sG------------- 571 (1118)
..|++++++ ..+|+|||++|++||+++|+|+||||||||+++|. | .+.+. +..|
T Consensus 646 ~~L~v~~l~-------~~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 718 (993)
T 2ygr_A 646 RQLTVVGAR-------EHNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDK 718 (993)
T ss_dssp SEEEEEEEC-------STTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSE
T ss_pred ceEEEecCc-------cccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccce
Confidence 457888874 23799999999999999999999999999999853 2 22110 1223
Q ss_pred EEEECCEecCh--h-----------h---------hcCeEEEEcCCCCCC----------------------C-------
Q 048718 572 TILVNGKVASI--Q-----------S---------YKRIIGFVPQDDIVH----------------------G------- 600 (1118)
Q Consensus 572 ~I~inG~~~~~--~-----------~---------~r~~IgyV~Qd~~l~----------------------~------- 600 (1118)
.|.+++.++.. . . ..+.+||++|...+. +
T Consensus 719 ~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce 798 (993)
T 2ygr_A 719 LVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCE 798 (993)
T ss_dssp EECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECT
T ss_pred EEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeeh
Confidence 35556554310 0 0 012357777753221 1
Q ss_pred -------------------------CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCC
Q 048718 601 -------------------------NLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQH-IRDSLVGTVEKRGI 654 (1118)
Q Consensus 601 -------------------------~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~-~~dt~vg~~~~rgL 654 (1118)
.+||.|++.|... .+ . ..++.++|+.+||.. ..++.+.+ |
T Consensus 799 ~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~------~~-~--~~~~~~~L~~lgL~~~~l~~~~~~-----L 864 (993)
T 2ygr_A 799 VCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEP------IA-G--VHRYLRTLVDVGLGYVRLGQPAPT-----L 864 (993)
T ss_dssp TTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTT------CH-H--HHHHHHHHHHTTGGGSBTTCCGGG-----S
T ss_pred hccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhc------ch-H--HHHHHHHHHHcCCCcccccCcccc-----C
Confidence 3577777776432 11 1 123568899999987 56777665 9
Q ss_pred CHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEe---
Q 048718 655 SGGQRKRVNVGLEMVMEP---SLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLA--- 728 (1118)
Q Consensus 655 SGGERQRVsIArALl~~P---~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~--- 728 (1118)
||||||||+||++|+.+| +||||||||+|||+.+...+++.|++++++|.|||+++|+++. + +.+|++++|.
T Consensus 865 SGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~-i-~~aDrIivL~p~g 942 (993)
T 2ygr_A 865 SGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDV-I-KTSDWIIDLGPEG 942 (993)
T ss_dssp CHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH-H-TTCSEEEEEESSS
T ss_pred CHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH-H-HhCCEEEEECCCc
Confidence 999999999999999865 9999999999999999999999999998889999999999875 3 6899999995
Q ss_pred --cCcEEEEecChhhHH
Q 048718 729 --KGGVIVYHGPVKKVE 743 (1118)
Q Consensus 729 --~GG~iv~~G~~~~l~ 743 (1118)
++|++++.|+++++.
T Consensus 943 g~~~G~Iv~~G~~~el~ 959 (993)
T 2ygr_A 943 GAGGGTVVAQGTPEDVA 959 (993)
T ss_dssp TTSCSEEEEEECHHHHH
T ss_pred CCCCCEEEEecCHHHHH
Confidence 468999999998874
No 64
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.94 E-value=2.8e-26 Score=264.36 Aligned_cols=203 Identities=22% Similarity=0.254 Sum_probs=144.3
Q ss_pred eeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC------------------------------------CCcee
Q 048718 528 HLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPG------------------------------------CIMSG 571 (1118)
Q Consensus 528 ~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~------------------------------------~~~sG 571 (1118)
.+|+++++++.+| +++|+|||||||||||++|.++..+ .+.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4799999999999 9999999999999999999877642 12378
Q ss_pred EEEECCEecCh---hhhc-CeEEEEcCCCCCCCCCCHHHHHHHHHhhcc-----------------------CCCCC---
Q 048718 572 TILVNGKVASI---QSYK-RIIGFVPQDDIVHGNLTVEENLWFSARCRL-----------------------SADLP--- 621 (1118)
Q Consensus 572 ~I~inG~~~~~---~~~r-~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~-----------------------~~~~~--- 621 (1118)
+|.+||++++. ..+. ..+++++|++.++.. +..+...|.-.... .....
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 99999998764 2233 348999999876643 55544443211100 00000
Q ss_pred -------------------------------HHHHHHHHHHHHHHcCCCccc----------------cc---cccC---
Q 048718 622 -------------------------------KAEKVLVVERVIESLGLQHIR----------------DS---LVGT--- 648 (1118)
Q Consensus 622 -------------------------------~~~~~~~v~~lL~~lgL~~~~----------------dt---~vg~--- 648 (1118)
.......+++.++.+++.+.. +. .+..
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 000123345556666664310 00 0100
Q ss_pred ---ccCCC-CCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccC
Q 048718 649 ---VEKRG-ISGGQRKRVNVGLEMVMEP--SLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFD 722 (1118)
Q Consensus 649 ---~~~rg-LSGGERQRVsIArALl~~P--~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D 722 (1118)
...+. |||||||||+||++|+.+| +||||||||+|||+.++..|.+.|++++ +|.|||+|||++. +...+|
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~--~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQ--IAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHH--HHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHH--HHhhcC
Confidence 01111 6999999999999999999 9999999999999999999999999987 6899999999985 347899
Q ss_pred cEEEE----ecCcEEEEe
Q 048718 723 DLILL----AKGGVIVYH 736 (1118)
Q Consensus 723 ~vivL----~~GG~iv~~ 736 (1118)
++++| .+ |+++..
T Consensus 364 ~i~~l~k~~~~-G~~~~~ 380 (415)
T 4aby_A 364 HHYKVEKQVED-GRTVSH 380 (415)
T ss_dssp EEEEEEEEEET-TEEEEE
T ss_pred eEEEEEEeccC-CceEEE
Confidence 99999 65 566544
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.3e-29 Score=295.94 Aligned_cols=196 Identities=15% Similarity=0.141 Sum_probs=152.1
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcee-E-EEECCEecChhhhcCeEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSG-T-ILVNGKVASIQSYKRIIG 590 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG-~-I~inG~~~~~~~~r~~Ig 590 (1118)
++++||++.| .++|+++++|++++|+||||||||||+|+|+|+.. +++| + |.++|. .++.++
T Consensus 119 i~~~nl~~~y--------~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~------~~~~i~ 182 (460)
T 2npi_A 119 KYIYNLHFML--------EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD------PQQPIF 182 (460)
T ss_dssp HHHHHHHHHH--------HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC------TTSCSS
T ss_pred hhhhhhhehh--------hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC------ccCCee
Confidence 4566666555 27999999999999999999999999999999997 6899 9 999982 367799
Q ss_pred EEcCCCC---CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 048718 591 FVPQDDI---VHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 591 yV~Qd~~---l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
|+||+.. +.+.+||+||+ |+....... . ...++.++++.+||.+..+ + ..|||||||||+||++
T Consensus 183 ~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~--~---~~~~~~~ll~~~gl~~~~~--~-----~~LSgGq~qrlalAra 249 (460)
T 2npi_A 183 TVPGCISATPISDILDAQLPT-WGQSLTSGA--T---LLHNKQPMVKNFGLERINE--N-----KDLYLECISQLGQVVG 249 (460)
T ss_dssp SCSSCCEEEECCSCCCTTCTT-CSCBCBSSC--C---SSCCBCCEECCCCSSSGGG--C-----HHHHHHHHHHHHHHHH
T ss_pred eeccchhhcccccccchhhhh-cccccccCc--c---hHHHHHHHHHHhCCCcccc--h-----hhhhHHHHHHHHHHHH
Confidence 9999984 34567999998 654321110 0 0123456778889887655 3 3499999999999999
Q ss_pred --HhhCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCc--H---HHHhccCc-----EEEEecC
Q 048718 668 --MVMEPSL----LILDE-PTSGLDSSSSQLLLRALRREALEGVNICTVVHQPS--Y---ALFRMFDD-----LILLAKG 730 (1118)
Q Consensus 668 --Ll~~P~l----LlLDE-PTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~--~---~i~~~~D~-----vivL~~G 730 (1118)
|+.+|++ ||||| ||++||+. ...+.+++++ .|+|+|+++|+.+ . .+.+++|+ +++|.++
T Consensus 250 ~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~ 325 (460)
T 2npi_A 250 QRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKL 325 (460)
T ss_dssp HHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCC
T ss_pred HHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCC
Confidence 9999999 99999 99999999 4444444433 3889999999987 2 24478999 9999734
Q ss_pred cEEEEecChhhH
Q 048718 731 GVIVYHGPVKKV 742 (1118)
Q Consensus 731 G~iv~~G~~~~l 742 (1118)
|+++ .|+++++
T Consensus 326 G~iv-~g~~~~~ 336 (460)
T 2npi_A 326 DGVS-AVDDVYK 336 (460)
T ss_dssp TTCC-CCCHHHH
T ss_pred CcEE-ECCHHHH
Confidence 5677 8988765
No 66
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.90 E-value=1.4e-23 Score=235.65 Aligned_cols=202 Identities=19% Similarity=0.251 Sum_probs=129.6
Q ss_pred eeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--------------------------------------------
Q 048718 531 RSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPG-------------------------------------------- 566 (1118)
Q Consensus 531 ~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~-------------------------------------------- 566 (1118)
+++++++.+| +++|+|||||||||||++|..++..
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3678888899 9999999999999999999955310
Q ss_pred ----CCceeEEEECCEecChh---hhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccC--CC-----C---CHHHHHHHH
Q 048718 567 ----CIMSGTILVNGKVASIQ---SYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLS--AD-----L---PKAEKVLVV 629 (1118)
Q Consensus 567 ----~~~sG~I~inG~~~~~~---~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~--~~-----~---~~~~~~~~v 629 (1118)
.+.+|.+.+||.+.... .....+++.+|+..+++.-++.+++......+.. .. . ......+..
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 01247889999876532 2334567666665544333444444322110000 00 0 000000111
Q ss_pred ---------------------HHHHHHcCC------CccccccccCccCCCCCHHHHHHHHHHHHHh----hCCCEEEEe
Q 048718 630 ---------------------ERVIESLGL------QHIRDSLVGTVEKRGISGGQRKRVNVGLEMV----MEPSLLILD 678 (1118)
Q Consensus 630 ---------------------~~lL~~lgL------~~~~dt~vg~~~~rgLSGGERQRVsIArALl----~~P~lLlLD 678 (1118)
.++++. |+ .+..+..+ ..|||||||||+||++|+ .+|+|||||
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~~~~~~~~~~~~~~~-----~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllD 248 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDA-GFEISIRKPGRRDQKL-----SLLSGGEKALVGLALLFALMEIKPSPFYVLD 248 (322)
T ss_dssp HHHHHHHHTSCEEEC---------------CCEEECTTSCCCBG-----GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEE
T ss_pred HHHHHHhcCCceEEEEeeccccccccC-CeEEEEecCccccCch-----hhCCHHHHHHHHHHHHHHHhccCCCCEEEEe
Confidence 112221 22 12233333 359999999999999997 588999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcE--EEEecCcEEEEecChhhH
Q 048718 679 EPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDL--ILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 679 EPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~v--ivL~~GG~iv~~G~~~~l 742 (1118)
|||++||+..+..+.+.|+++. +|.+||++||+++ +.+.+|++ ++|.+|...+.....++.
T Consensus 249 Ep~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~v~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 249 EVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHGVTMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp SCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEEEEESSSCEEEEECCC---
T ss_pred CCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEEEEEeCCEEEEEEEEcchh
Confidence 9999999999999999999874 5889999999964 45789976 777777666766666553
No 67
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.89 E-value=3.4e-23 Score=236.92 Aligned_cols=82 Identities=26% Similarity=0.421 Sum_probs=73.9
Q ss_pred CCCCCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcE
Q 048718 651 KRGISGGQRKRVNVGLEMV------MEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDL 724 (1118)
Q Consensus 651 ~rgLSGGERQRVsIArALl------~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~v 724 (1118)
+..|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|+++...|.|||+|||+++. .+.+|++
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~--~~~~d~~ 354 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF--SEAFDRK 354 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH--HTTCSCE
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH--HHhCCEE
Confidence 3459999999999999999 7999999999999999999999999999998789999999999864 4789999
Q ss_pred EEEecCcEEEE
Q 048718 725 ILLAKGGVIVY 735 (1118)
Q Consensus 725 ivL~~GG~iv~ 735 (1118)
++|.+ |+++.
T Consensus 355 ~~l~~-G~i~~ 364 (365)
T 3qf7_A 355 LRITG-GVVVN 364 (365)
T ss_dssp EEEET-TEEC-
T ss_pred EEEEC-CEEEe
Confidence 99976 67764
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.89 E-value=2.9e-26 Score=243.26 Aligned_cols=146 Identities=18% Similarity=0.220 Sum_probs=102.2
Q ss_pred cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHH
Q 048718 526 NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVE 605 (1118)
Q Consensus 526 ~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~ 605 (1118)
++.+|+|| ++||+++|+|||||||||||++|+|+ + |++|+|............++.||||||++ +
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~--p~~G~I~~~~~~~~~~~~~~~ig~v~q~~--------~ 76 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A--LQSKQVSRIILTRPAVEAGEKLGFLPGTL--------N 76 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H--HHTTSCSEEEEEECSCCTTCCCCSSCC-----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C--CcCCeeeeEEecCCchhhhcceEEecCCH--------H
Confidence 35789996 89999999999999999999999999 7 68898842111111123567899999986 4
Q ss_pred HHH-HHHHhh--ccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 048718 606 ENL-WFSARC--RLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTS 682 (1118)
Q Consensus 606 EnL-~f~a~l--r~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTs 682 (1118)
||+ .+.... ....... ...++++++. | | ||||||+|||||+.+|+||||||||+
T Consensus 77 enl~~~~~~~~~~~~~~~~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDEPts 133 (208)
T 3b85_A 77 EKIDPYLRPLHDALRDMVE----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDEAQN 133 (208)
T ss_dssp ---CTTTHHHHHHHTTTSC----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECSGGG
T ss_pred HHHHHHHHHHHHHHHHhcc----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 554 231100 0000001 1234555543 2 3 99999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcH
Q 048718 683 GLDSSSSQLLLRALRREALEGVNICTVVHQPSY 715 (1118)
Q Consensus 683 GLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~ 715 (1118)
| ++..+.+.|+++ .+|+||| +|||++.
T Consensus 134 ~----~~~~l~~~l~~l-~~g~tii-vtHd~~~ 160 (208)
T 3b85_A 134 T----TPAQMKMFLTRL-GFGSKMV-VTGDITQ 160 (208)
T ss_dssp C----CHHHHHHHHTTB-CTTCEEE-EEEC---
T ss_pred c----cHHHHHHHHHHh-cCCCEEE-EECCHHH
Confidence 9 888999999888 6689999 9999763
No 69
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.88 E-value=4.2e-24 Score=218.61 Aligned_cols=144 Identities=15% Similarity=0.231 Sum_probs=101.8
Q ss_pred eeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCC-CCCCHHHHHHH
Q 048718 532 SVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVH-GNLTVEENLWF 610 (1118)
Q Consensus 532 nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~-~~LTV~EnL~f 610 (1118)
||||++++||+++|+||||||||||+|++.+-.. .++ ...++ |+++|++... ..-++.+.+..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--------~~~-----~d~~~---g~~~~~~~~~~~~~~~~~~~~~ 64 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--------VIS-----SDFCR---GLMSDDENDQTVTGAAFDVLHY 64 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--------EEE-----HHHHH---HHHCSSTTCGGGHHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--------EEc-----cHHHH---HHhcCcccchhhHHHHHHHHHH
Confidence 6899999999999999999999999999653211 111 11122 6677764311 00111222111
Q ss_pred HHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH---
Q 048718 611 SARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSS--- 687 (1118)
Q Consensus 611 ~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~--- 687 (1118)
... .....|.....+.. ...||||||||+||++|+.+|++|+|||||++||+.
T Consensus 65 -----------------~~~-~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 65 -----------------IVS-KRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp -----------------HHH-HHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred -----------------HHH-HHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 111 12234554444332 237999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHHCCCEEEEEEcCCcH
Q 048718 688 -------------SSQLLLRALRREALEGVNICTVVHQPSY 715 (1118)
Q Consensus 688 -------------sa~~i~~~Lr~la~~G~TIIvvtHq~~~ 715 (1118)
...++.+.|++++++|.|+|+++|++++
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~ 161 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEE 161 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHH
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHH
Confidence 5588899998888779999999999865
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.86 E-value=4.4e-25 Score=256.14 Aligned_cols=170 Identities=14% Similarity=0.173 Sum_probs=135.5
Q ss_pred ceeeeeeEEEEeCCe--------------------EEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhc
Q 048718 527 KHLMRSVTGKLSPGR--------------------VSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYK 586 (1118)
Q Consensus 527 k~IL~nVSl~I~~GE--------------------i~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r 586 (1118)
+.+|++||++|++|+ +++|+||||||||||+|+|+|+.+ +++|+|.++|.+.. +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~--p~~GsI~~~g~~~t----~ 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN--EEEGAAKTGVVEVT----M 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT--TSTTSCCCCC--------C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC--ccCceEEECCeecc----e
Confidence 468999999999999 999999999999999999999998 68999999997542 2
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH--HHHHHHH
Q 048718 587 RIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGG--QRKRVNV 664 (1118)
Q Consensus 587 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGG--ERQRVsI 664 (1118)
.+|++|++ .++.+|+.||+.++. . +..++++++.++|.+.. ..+ . |||| ||||+.|
T Consensus 110 --~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~-~~~-----~-lS~G~~~kqrv~l 167 (413)
T 1tq4_A 110 --ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYD-FFI-----I-ISATRFKKNDIDI 167 (413)
T ss_dssp --CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCS-EEE-----E-EESSCCCHHHHHH
T ss_pred --eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccC-CeE-----E-eCCCCccHHHHHH
Confidence 27899985 577899999876542 1 12367889999987642 222 2 9999 9999999
Q ss_pred HHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----HCC----CEEEEEEcCCcH-HHHhccCcE
Q 048718 665 GLEMVM----------EPSLLILDEPTSGLDSSSSQLLLRALRREA-----LEG----VNICTVVHQPSY-ALFRMFDDL 724 (1118)
Q Consensus 665 ArALl~----------~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la-----~~G----~TIIvvtHq~~~-~i~~~~D~v 724 (1118)
|++|+. +|++++|||||+|||+.++.++++.|+++. +.| .+|++++|+.+. .+.+++|++
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999999999884 222 568889998663 234455544
No 71
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.86 E-value=1.1e-25 Score=236.62 Aligned_cols=183 Identities=16% Similarity=0.139 Sum_probs=123.1
Q ss_pred ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHH
Q 048718 527 KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEE 606 (1118)
Q Consensus 527 k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~E 606 (1118)
.++|+| .+|++||+++|+||||||||||+|+|+|+++ ...+.+.+.+.+.. ...++.++|+||++.+|+.+|+.+
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~-~~~~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPR-PGEVDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCC-TTCCBTTTBEECCHHHHHHHHHTT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCc-ccccCCCeeEecCHHHHHHHHhcC
Confidence 457777 6899999999999999999999999999985 23332222222111 123567999999988888888888
Q ss_pred HHHHHHhhcc---CCCCCHHHHHHHHHHH------HHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 048718 607 NLWFSARCRL---SADLPKAEKVLVVERV------IESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLIL 677 (1118)
Q Consensus 607 nL~f~a~lr~---~~~~~~~~~~~~v~~l------L~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlL 677 (1118)
++.+...... ....++.+.++++++. ++.+|+.+.++.++.. || +|+.+|++++|
T Consensus 84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----lS-----------~l~~~p~~~~L 147 (207)
T 1znw_A 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEA-----VT-----------VFLAPPSWQDL 147 (207)
T ss_dssp CEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTS-----EE-----------EEEECSCHHHH
T ss_pred CceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCc-----EE-----------EEEECCCHHHH
Confidence 7643211100 0122344444555555 5566666666665544 77 89999999999
Q ss_pred eCCCCCC----CHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEecCc
Q 048718 678 DEPTSGL----DSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAKGG 731 (1118)
Q Consensus 678 DEPTsGL----D~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~GG 731 (1118)
||||+|| |+..+.++.+.++++.. .|.|+|+++|++++ +.+++|++++|.+.|
T Consensus 148 Dep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~-~~~~~d~i~~l~~p~ 205 (207)
T 1znw_A 148 QARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLES-ACAELVSLLVGTAPG 205 (207)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHH-HHHHHHHHHC-----
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHH-HHHHHHHHHHhccCC
Confidence 9999998 78899999999999975 58999999999986 568999999985543
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.85 E-value=1.7e-22 Score=209.20 Aligned_cols=145 Identities=15% Similarity=0.143 Sum_probs=99.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEec---ChhhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVA---SIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSA 618 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~---~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~ 618 (1118)
.++|+||||||||||+++|+|++. |.++|.+. .....++.+||++|+. ++.+++ ++ .. .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~--~- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-FS-SK--F- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-EE-ET--T-
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-HH-hh--c-
Confidence 589999999999999999999874 33444332 1113467799999975 222332 10 00 0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHH
Q 048718 619 DLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLE-----MVMEPSLLILDE--PTSGLDSSSSQL 691 (1118)
Q Consensus 619 ~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArA-----Ll~~P~lLlLDE--PTsGLD~~sa~~ 691 (1118)
. .-.+..++++. .|||||||||+||++ |+.+|++|+||| ||++||+.....
T Consensus 64 -~----------------~~~~~~~~~~~-----~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 64 -F----------------TSKKLVGSYGV-----NVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp -C----------------CCSSEETTEEE-----CHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred -C----------------Ccccccccccc-----CcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 0 00123344444 499999999999996 999999999999 999999999998
Q ss_pred HHHHHHHHHHCCCEEEEEEc---CCcHHHHhccCcEEEEecCcEEEE
Q 048718 692 LLRALRREALEGVNICTVVH---QPSYALFRMFDDLILLAKGGVIVY 735 (1118)
Q Consensus 692 i~~~Lr~la~~G~TIIvvtH---q~~~~i~~~~D~vivL~~GG~iv~ 735 (1118)
+.+.|++ .+.|+|+++| +.. .+..++|+ .+|++++
T Consensus 122 l~~~l~~---~~~~~i~~~H~~h~~~-~~~~i~~r-----~~~~i~~ 159 (178)
T 1ye8_A 122 VRQIMHD---PNVNVVATIPIRDVHP-LVKEIRRL-----PGAVLIE 159 (178)
T ss_dssp HHHHHTC---TTSEEEEECCSSCCSH-HHHHHHTC-----TTCEEEE
T ss_pred HHHHHhc---CCCeEEEEEccCCCch-HHHHHHhc-----CCcEEEE
Confidence 8887765 4777999996 433 34566775 3456654
No 73
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.84 E-value=1.8e-25 Score=250.01 Aligned_cols=169 Identities=14% Similarity=0.233 Sum_probs=131.1
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFV 592 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV 592 (1118)
|+++||++.|. +.+|++||++|++|++++|+||||||||||+++|+|++ +|+| ++|+
T Consensus 102 i~~~~vs~~y~---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I---------------~~~v 158 (305)
T 2v9p_A 102 FNYQNIELITF---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSV---------------LSFA 158 (305)
T ss_dssp HHHTTCCHHHH---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEE---------------ECGG
T ss_pred EEEEEEEEEcC---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceE---------------EEEe
Confidence 66788998884 57999999999999999999999999999999999987 5777 3567
Q ss_pred cCCCCCCCCCCHHH-HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 048718 593 PQDDIVHGNLTVEE-NLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVME 671 (1118)
Q Consensus 593 ~Qd~~l~~~LTV~E-nL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~ 671 (1118)
+|++.++.. |++| ||.|... ... .+.+.++.+ |.+..+ +..|||||||| ||||+.+
T Consensus 159 ~q~~~lf~~-ti~~~ni~~~~~------~~~-----~~~~~i~~~-L~~gld-------g~~LSgGqkQR---ARAll~~ 215 (305)
T 2v9p_A 159 NHKSHFWLA-SLADTRAALVDD------ATH-----ACWRYFDTY-LRNALD-------GYPVSIDRKHK---AAVQIKA 215 (305)
T ss_dssp GTTSGGGGG-GGTTCSCEEEEE------ECH-----HHHHHHHHT-TTGGGG-------TCCEECCCSSC---CCCEECC
T ss_pred cCccccccc-cHHHHhhccCcc------ccH-----HHHHHHHHH-hHccCC-------ccCcCHHHHHH---HHHHhCC
Confidence 888877764 7876 7766311 111 245566654 444444 23599999999 9999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHHHHHHhc
Q 048718 672 PSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVEEYFASL 749 (1118)
Q Consensus 672 P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~~yf~~l 749 (1118)
|+||| |++||+.++..+.. ++|+++. .+.+|++ +|.+ |++++.|+.+++..+|..+
T Consensus 216 p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~~--~~~aD~i-vl~~-G~iv~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 216 PPLLV----TSNIDVQAEDRYLY--------------LHSRVQT--FRFEQPC-TDES-GEQPFNITDADWKSFFVRL 271 (305)
T ss_dssp CCEEE----EESSCSTTCGGGGG--------------GTTTEEE--EECCCCC-CCC----CCCCCCHHHHHHHHHHS
T ss_pred CCEEE----ECCCCHHHHHHHHH--------------HhCCHHH--HHhCCEE-EEeC-CEEEEeCCHHHHHHHHHHH
Confidence 99999 99999999888752 1888763 4789999 8865 7999999999986666543
No 74
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.83 E-value=2.7e-22 Score=224.15 Aligned_cols=172 Identities=16% Similarity=0.157 Sum_probs=131.1
Q ss_pred eeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-------hhh--cCeEEEEcCCCC-CC
Q 048718 530 MRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-------QSY--KRIIGFVPQDDI-VH 599 (1118)
Q Consensus 530 L~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-------~~~--r~~IgyV~Qd~~-l~ 599 (1118)
++++|+++++|++++|+||||||||||++.|+|+++ +.+|+|.++|.+... ..+ +..|+|++|++. ++
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 356788889999999999999999999999999987 578999999987532 122 346999999998 88
Q ss_pred CCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCC--EEEE
Q 048718 600 GNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPS--LLIL 677 (1118)
Q Consensus 600 ~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~--lLlL 677 (1118)
+.+||+|++.++.... .. ..+++.+|+.+..+.++++ || |||++||++|+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~~~----~d--------~~lldt~gl~~~~~~~~~e-----LS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLMEE-----LI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHHTT----CS--------EEEECCCCCSSCCHHHHHH-----HH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHHcC----Cc--------chHHhcCCCCcchhHHHHH-----HH---HHHHHHHHhhccCCCeeEEEE
Confidence 8899999999864311 00 1356678888877777765 99 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEEcCCc--------HHHHhccCcEEEEecC
Q 048718 678 DEPTSGLDSSSSQLLLRALRREA-LEGVNICTVVHQPS--------YALFRMFDDLILLAKG 730 (1118)
Q Consensus 678 DEPTsGLD~~sa~~i~~~Lr~la-~~G~TIIvvtHq~~--------~~i~~~~D~vivL~~G 730 (1118)
| ||+|||+... ++.+. ..|.|+|++||... .......+.+.++..|
T Consensus 228 D-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~G 282 (302)
T 3b9q_A 228 D-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVG 282 (302)
T ss_dssp E-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECS
T ss_pred e-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCC
Confidence 9 9999999854 24454 35899999999422 1122344566666553
No 75
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.83 E-value=9.1e-23 Score=224.51 Aligned_cols=148 Identities=19% Similarity=0.177 Sum_probs=99.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLP 621 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~ 621 (1118)
.++|+||||||||||+|+|+|+.. +++|+|.++|.++.....++.++|++|++.+++.+||.||+.|+..... .. .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~-~~-~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN-EN-C 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC-TT-C
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc-HH-H
Confidence 489999999999999999999987 6899999999876544456789999999999999999999999754321 11 1
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048718 622 KAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREAL 701 (1118)
Q Consensus 622 ~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~ 701 (1118)
. +.+.++++ .+..+..+++ |||||||||+|||+++. ++++||||.|||+.. .+.++.+..
T Consensus 80 ~----~~i~~~~~----~~~~~~~~~~-----LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 W----EPIEKYIN----EQYEKFLKEE-----VNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp S----HHHHHHHH----HHHHHHHHHH-----SCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred H----HHHHHHHH----HHHHhhhHHh-----cCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 1 11233332 2334455554 99999999999999886 999999999999987 445556655
Q ss_pred CCCEEEEEEcCCc
Q 048718 702 EGVNICTVVHQPS 714 (1118)
Q Consensus 702 ~G~TIIvvtHq~~ 714 (1118)
. ++||+++|..+
T Consensus 140 ~-~~vI~Vi~K~D 151 (270)
T 3sop_A 140 V-VNIIPVIAKAD 151 (270)
T ss_dssp T-SEEEEEETTGG
T ss_pred c-CcEEEEEeccc
Confidence 5 89999999854
No 76
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.80 E-value=2.6e-22 Score=234.91 Aligned_cols=191 Identities=15% Similarity=0.080 Sum_probs=150.0
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCE---ecCh------
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGK---VASI------ 582 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~---~~~~------ 582 (1118)
.++++++++.|.. +..+|+++ +.|.+||+++|+|||||||||||++|+|+.+ ++.|.|.++|+ ++..
T Consensus 131 ~l~~~~v~~~~~t-g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~--~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 131 PLQRTPIEHVLDT-GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR--ADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp TTTSCCCCSBCCC-SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCHHHHHHHHHTTT
T ss_pred ceEEeccceecCC-CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC--CCeEEEEEeceecHHHHHHHHhhc
Confidence 3677888888842 36799999 9999999999999999999999999999997 68999999997 3321
Q ss_pred --hhhcCeEEEEcCC-CCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 048718 583 --QSYKRIIGFVPQD-DIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQR 659 (1118)
Q Consensus 583 --~~~r~~IgyV~Qd-~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGER 659 (1118)
..+++.++|++|+ +.+++++||.+|+.+.+....... ..+ ....+. ...||+||
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~-------~~v---------~~~ld~------l~~lS~g~- 263 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRG-------QHV---------LLIMDS------LTRYAMAQ- 263 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT-------CEE---------EEEEEC------HHHHHHHH-
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCC-------CCH---------HHHHHh------HHHHHHHH-
Confidence 2356789999995 556778899999988764321000 000 111121 23499999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---C-CC-----EEEEEEcCCcHHHHhccCcEEEEecC
Q 048718 660 KRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREAL---E-GV-----NICTVVHQPSYALFRMFDDLILLAKG 730 (1118)
Q Consensus 660 QRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~---~-G~-----TIIvvtHq~~~~i~~~~D~vivL~~G 730 (1118)
|||+|| +.+|++ |+|||+.+...+.+.|+++.+ + |. ||++++||++. ..+|++++|.+
T Consensus 264 qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~~---~iad~v~~l~d- 330 (438)
T 2dpy_A 264 REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQD---PIADSARAILD- 330 (438)
T ss_dssp HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSCC---HHHHHHHHHSS-
T ss_pred HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCccc---hhhceEEEEeC-
Confidence 999999 889988 999999999999999988865 3 64 89999999982 57899999975
Q ss_pred cEEEEecChhhH
Q 048718 731 GVIVYHGPVKKV 742 (1118)
Q Consensus 731 G~iv~~G~~~~l 742 (1118)
|+++..|+..++
T Consensus 331 G~Ivl~~~~~~~ 342 (438)
T 2dpy_A 331 GHIVLSRRLAEA 342 (438)
T ss_dssp EEEEECHHHHHT
T ss_pred cEEEEeCCHHHc
Confidence 799998877654
No 77
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.80 E-value=3e-21 Score=220.48 Aligned_cols=153 Identities=18% Similarity=0.183 Sum_probs=124.5
Q ss_pred eeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-------hhh--cCeEEEEcCCCC-CCC
Q 048718 531 RSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-------QSY--KRIIGFVPQDDI-VHG 600 (1118)
Q Consensus 531 ~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-------~~~--r~~IgyV~Qd~~-l~~ 600 (1118)
.++|+++++|++++|+||||||||||++.|+|+++ +.+|+|.++|.+... ..+ +..|+|++|++. ++|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc--ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 46788889999999999999999999999999987 578999999987532 112 346999999988 888
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCC--EEEEe
Q 048718 601 NLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPS--LLILD 678 (1118)
Q Consensus 601 ~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~--lLlLD 678 (1118)
.+||+|++.++.... .. ..+++.+|+.+..+.++.+ || |||++||++|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~~~----~d--------~~lldt~Gl~~~~~~~~~e-----LS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLMEE-----LI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHHTT----CS--------EEEEECCCCSSCCHHHHHH-----HH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHhCC----CH--------HHHHHhcCCChhhhhHHHH-----HH---HHHHHHHHHHhcCCCceEEEEc
Confidence 899999999875311 00 1345678888877777765 99 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEEcC
Q 048718 679 EPTSGLDSSSSQLLLRALRREA-LEGVNICTVVHQ 712 (1118)
Q Consensus 679 EPTsGLD~~sa~~i~~~Lr~la-~~G~TIIvvtHq 712 (1118)
||+|||+.+.. +.+. ..|.|+|++||.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKL 313 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESC
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecC
Confidence 99999998653 3444 358999999994
No 78
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.79 E-value=2.9e-19 Score=222.64 Aligned_cols=110 Identities=30% Similarity=0.468 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048718 625 KVLVVERVIESLGLQHI-RDSLVGTVEKRGISGGQRKRVNVGLEMVMEP--SLLILDEPTSGLDSSSSQLLLRALRREAL 701 (1118)
Q Consensus 625 ~~~~v~~lL~~lgL~~~-~dt~vg~~~~rgLSGGERQRVsIArALl~~P--~lLlLDEPTsGLD~~sa~~i~~~Lr~la~ 701 (1118)
...+++ .+..+||.+. .++.+.+ |||||||||.||++|+++| .||||||||+|||+.....++++|++|..
T Consensus 356 i~~rl~-~L~~vGL~~l~l~r~~~t-----LSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~ 429 (842)
T 2vf7_A 356 LVKRLD-VLLHLGLGYLGLDRSTPT-----LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKR 429 (842)
T ss_dssp HHHHHH-HHHHTTCTTSBTTCBGGG-----SCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT
T ss_pred HHHHHH-HHHhCCCCcCCccCCcCc-----CCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHH
Confidence 344555 5788999865 6887776 9999999999999999999 59999999999999999999999999988
Q ss_pred CCCEEEEEEcCCcHHHHhccCcEEEEe-----cCcEEEEecChhhH
Q 048718 702 EGVNICTVVHQPSYALFRMFDDLILLA-----KGGVIVYHGPVKKV 742 (1118)
Q Consensus 702 ~G~TIIvvtHq~~~~i~~~~D~vivL~-----~GG~iv~~G~~~~l 742 (1118)
.|.|||+|+|+++ +.+.+|++++|. +||++++.|+++++
T Consensus 430 ~G~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~ 473 (842)
T 2vf7_A 430 GGNSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEGL 473 (842)
T ss_dssp TTCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGGG
T ss_pred cCCEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHHH
Confidence 8999999999986 346899999994 57899999999875
No 79
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.79 E-value=1.3e-23 Score=223.44 Aligned_cols=152 Identities=13% Similarity=0.126 Sum_probs=101.0
Q ss_pred eeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh----hhhcCeEEEEcCCCCCCCCCC
Q 048718 528 HLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI----QSYKRIIGFVPQDDIVHGNLT 603 (1118)
Q Consensus 528 ~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r~~IgyV~Qd~~l~~~LT 603 (1118)
.-|+||||+|++|++++|+||||||||||+++|+|++ + |+|.+ |.+... ...++.++|++|++.+|+.++
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~---p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF---P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS---T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC---C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence 4699999999999999999999999999999999987 2 88998 755421 123567899999987765443
Q ss_pred -HHHHHHH---HHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH-----HHHHhhCCCE
Q 048718 604 -VEENLWF---SARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNV-----GLEMVMEPSL 674 (1118)
Q Consensus 604 -V~EnL~f---~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsI-----ArALl~~P~l 674 (1118)
+.+++.+ ....+ +.+. ..++++++...+. ..+ ..|||||+||++| +++++.+|++
T Consensus 85 ~~~~~l~~~~~~~~~~---g~~~----~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~ 148 (218)
T 1z6g_A 85 KNEDFLEYDNYANNFY---GTLK----SEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPST 148 (218)
T ss_dssp HTTCEEEEEEETTEEE---EEEH----HHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCH
T ss_pred hccchhhhhhcccccC---CCcH----HHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCH
Confidence 1112211 11100 1122 2356666643321 111 3499999999999 8999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048718 675 LILDEPTSGLDSSSSQLLLRALRREAL 701 (1118)
Q Consensus 675 LlLDEPTsGLD~~sa~~i~~~Lr~la~ 701 (1118)
++|||||+++|..+...+.+.|+.+..
T Consensus 149 ~~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 149 DVLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999988877643
No 80
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.78 E-value=1e-20 Score=213.76 Aligned_cols=131 Identities=18% Similarity=0.204 Sum_probs=106.8
Q ss_pred eeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEec-ChhhhcCeEEEEcCCCCCCCCCCHHH
Q 048718 528 HLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVA-SIQSYKRIIGFVPQDDIVHGNLTVEE 606 (1118)
Q Consensus 528 ~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~-~~~~~r~~IgyV~Qd~~l~~~LTV~E 606 (1118)
++++++++.+++|++++|+|||||||||||++|+|+++ +.+|.|.++|.+. .....++.+++++
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~--~~~g~i~i~~~~e~~~~~~~~~i~~~~------------- 223 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP--KEERIISIEDTEEIVFKHHKNYTQLFF------------- 223 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC--TTSCEEEEESSCCCCCSSCSSEEEEEC-------------
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCcEEEECCeeccccccchhEEEEEe-------------
Confidence 38999999999999999999999999999999999998 5899999998542 1111334445443
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048718 607 NLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDS 686 (1118)
Q Consensus 607 nL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~ 686 (1118)
+ |||+||++||+||..+|++|++||||+
T Consensus 224 ----------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~---- 251 (330)
T 2pt7_A 224 ----------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS---- 251 (330)
T ss_dssp ----------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS----
T ss_pred ----------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh----
Confidence 0 799999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecC
Q 048718 687 SSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKG 730 (1118)
Q Consensus 687 ~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~G 730 (1118)
.++.+.|+.+...+.|+|+++|+.+ ..+.+|++++|.+|
T Consensus 252 ---~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g 290 (330)
T 2pt7_A 252 ---SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSS 290 (330)
T ss_dssp ---THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcC
Confidence 2456677766544458999999988 34789999999765
No 81
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.78 E-value=2.6e-22 Score=225.25 Aligned_cols=123 Identities=15% Similarity=0.120 Sum_probs=98.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhcc
Q 048718 537 LSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRL 616 (1118)
Q Consensus 537 I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~ 616 (1118)
+++|++++|+||||||||||+++|+|+++ +..|. +.++||+|++.+++. |++||+.+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~--~~~G~--------------~~v~~v~qd~~~~~~-t~~e~~~~~~~--- 146 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA--RWDHH--------------PRVDLVTTDGFLYPN-AELQRRNLMHR--- 146 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH--TSTTC--------------CCEEEEEGGGGBCCH-HHHHHTTCTTC---
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc--ccCCC--------------CeEEEEecCccCCcc-cHHHHHHHHHh---
Confidence 78999999999999999999999999987 33331 458999999999988 99999865321
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048718 617 SADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDS 686 (1118)
Q Consensus 617 ~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~ 686 (1118)
.+.+.....+.+.++|+.++ .+..+..+.. |||||+|||+||++++.+|+|||+|||+..+|+
T Consensus 147 -~g~~~~~d~~~~~~~L~~l~-~~~~~~~~~~-----lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 147 -KGFPESYNRRALMRFVTSVK-SGSDYACAPV-----YSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp -TTSGGGBCHHHHHHHHHHHH-TTCSCEEEEE-----EETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred -cCCChHHHHHHHHHHHHHhC-CCcccCCccc-----CChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 12222222345778888887 5444555544 999999999999999999999999999999986
No 82
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.77 E-value=5.1e-20 Score=203.24 Aligned_cols=183 Identities=16% Similarity=0.094 Sum_probs=121.9
Q ss_pred ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcee-EEEECCEecChhhhcCeEEEEcCCCCCCCCCCHH
Q 048718 527 KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSG-TILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVE 605 (1118)
Q Consensus 527 k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG-~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~ 605 (1118)
.++|+++++.+++|++++|+||||||||||++.|+|... +.+| .|.+.+.......+++++.++.+... +++.
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~--~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG--TAMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH--HTSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH--HHcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhc
Confidence 358999999999999999999999999999999999986 3457 67554433333334444444444322 1233
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH-HHHHHHHHHHhhCCCEEEEeCCCC--
Q 048718 606 ENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQ-RKRVNVGLEMVMEPSLLILDEPTS-- 682 (1118)
Q Consensus 606 EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGE-RQRVsIArALl~~P~lLlLDEPTs-- 682 (1118)
+++..+. + ...+..+.++++++..++. .+..+ ..+|.+| +||+. |+++..+|++||+||||+
T Consensus 96 ~~l~~~~-~------~~~~~~~~~~~~l~~~~l~--i~~~~-----~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~ 160 (296)
T 1cr0_A 96 DSLKREI-I------ENGKFDQWFDELFGNDTFH--LYDSF-----AEAETDRLLAKLA-YMRSGLGCDVIILDHISIVV 160 (296)
T ss_dssp HHHHHHH-H------HHTHHHHHHHHHHSSSCEE--EECCC-----CSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---
T ss_pred cccccCC-C------CHHHHHHHHHHHhccCCEE--EECCC-----CCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccC
Confidence 4444321 1 1112223344444322221 11111 2388998 67777 999999999999999999
Q ss_pred -C---CCH-HHHHHHHHHHHHHHHC-CCEEEEEEcCC--cH-------------------HHHhccCcEEEEecC
Q 048718 683 -G---LDS-SSSQLLLRALRREALE-GVNICTVVHQP--SY-------------------ALFRMFDDLILLAKG 730 (1118)
Q Consensus 683 -G---LD~-~sa~~i~~~Lr~la~~-G~TIIvvtHq~--~~-------------------~i~~~~D~vivL~~G 730 (1118)
+ +|. ....++++.|+.++++ |.|||+++|+. +. .+.+.+|++++|.+|
T Consensus 161 ~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~ 235 (296)
T 1cr0_A 161 SASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (296)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecC
Confidence 5 555 6678899999999865 99999999995 31 466789999999874
No 83
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.76 E-value=2e-18 Score=197.28 Aligned_cols=81 Identities=21% Similarity=0.124 Sum_probs=72.1
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCc
Q 048718 653 GISGGQRKRVNVGLEMV---------MEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDD 723 (1118)
Q Consensus 653 gLSGGERQRVsIArALl---------~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~ 723 (1118)
.|||||||||+||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. +. .+|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~----~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP----GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT----TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc----cCCE
Confidence 59999999999999999 8999999999999999999999999997763 688889994 42 6899
Q ss_pred EEEEecCcEEEEecChhhH
Q 048718 724 LILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 724 vivL~~GG~iv~~G~~~~l 742 (1118)
+++|.+ |+++..|+++++
T Consensus 337 i~~l~~-G~i~~~g~~~~~ 354 (359)
T 2o5v_A 337 TLRAQA-GRFTPVADEEMQ 354 (359)
T ss_dssp EEEEET-TEEEECCCTTTS
T ss_pred EEEEEC-CEEEecCCHHHH
Confidence 999976 699999998765
No 84
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.76 E-value=5.4e-18 Score=191.72 Aligned_cols=75 Identities=33% Similarity=0.406 Sum_probs=67.7
Q ss_pred CCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEE
Q 048718 652 RGISGGQRK------RVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLI 725 (1118)
Q Consensus 652 rgLSGGERQ------RVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vi 725 (1118)
..||||||| ||++|++|+.+|++|||||||+|||+..+..+++.|+++..+|.|||++||+++ +.+.+|+++
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~--~~~~~d~~~ 324 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADHVI 324 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSEEE
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH--HHHhCCEEE
Confidence 459999999 677888888999999999999999999999999999998777899999999954 568999999
Q ss_pred EEe
Q 048718 726 LLA 728 (1118)
Q Consensus 726 vL~ 728 (1118)
+|.
T Consensus 325 ~l~ 327 (339)
T 3qkt_A 325 RIS 327 (339)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 85
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.75 E-value=7.3e-19 Score=220.77 Aligned_cols=164 Identities=22% Similarity=0.340 Sum_probs=124.9
Q ss_pred HHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCC-CC-HH---HHHHHH
Q 048718 555 TFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSAD-LP-KA---EKVLVV 629 (1118)
Q Consensus 555 TLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~-~~-~~---~~~~~v 629 (1118)
|...+..+++. +..|+|.++|+++.. +..+||.|++.|......... .. .. ......
T Consensus 383 ~C~~C~g~rl~--~~~~~V~i~G~~i~~----------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 444 (916)
T 3pih_A 383 TCSVCGGRRLN--REALSVKINGLNIHE----------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKR 444 (916)
T ss_dssp ECTTTCSCCBC--TTGGGEEETTEEHHH----------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHH
T ss_pred cchhcccccCC--hHhcCcEECCccHHH----------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHH
Confidence 33445555665 578999999987532 234678888877544322211 10 00 111234
Q ss_pred HHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEE
Q 048718 630 ERVIESLGLQHI-RDSLVGTVEKRGISGGQRKRVNVGLEMVMEPS--LLILDEPTSGLDSSSSQLLLRALRREALEGVNI 706 (1118)
Q Consensus 630 ~~lL~~lgL~~~-~dt~vg~~~~rgLSGGERQRVsIArALl~~P~--lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TI 706 (1118)
.+.|..+||.+. .++.+++ |||||||||+||++|+++|+ ||||||||+|||+.....+++.|++++++|.||
T Consensus 445 ~~~L~~vgL~~l~l~r~~~~-----LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tv 519 (916)
T 3pih_A 445 LEFLVDVGLEYLTLSRSATT-----LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTV 519 (916)
T ss_dssp HHHHHTTTCTTCBTTSBGGG-----CCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEE
T ss_pred HHHHHHcCCccccccCCccc-----CCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEE
Confidence 567888999865 5777776 99999999999999999887 999999999999999999999999998789999
Q ss_pred EEEEcCCcHHHHhccCcEEEEe-----cCcEEEEecChhhHH
Q 048718 707 CTVVHQPSYALFRMFDDLILLA-----KGGVIVYHGPVKKVE 743 (1118)
Q Consensus 707 IvvtHq~~~~i~~~~D~vivL~-----~GG~iv~~G~~~~l~ 743 (1118)
|+|+||++. + ..+|++++|. ++|++++.|+++++.
T Consensus 520 ivVtHd~~~-~-~~aD~ii~lgpgag~~~G~iv~~G~~~e~~ 559 (916)
T 3pih_A 520 IVVEHDEEV-I-RNADHIIDIGPGGGTNGGRVVFQGTVDELL 559 (916)
T ss_dssp EEECCCHHH-H-HTCSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred EEEeCCHHH-H-HhCCEEEEEcCCcccCCCEEEEeechhhhh
Confidence 999999864 3 5699999993 468999999998874
No 86
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.75 E-value=5.1e-20 Score=198.44 Aligned_cols=156 Identities=13% Similarity=0.049 Sum_probs=101.7
Q ss_pred CcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCH
Q 048718 525 KNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTV 604 (1118)
Q Consensus 525 ~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV 604 (1118)
+++.+|+||||++++|++++|+||||||||||+++|+|++ |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 3467999999999999999999999999999999999975 222232 2467799999996 6778999
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 048718 605 EENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGL 684 (1118)
Q Consensus 605 ~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGL 684 (1118)
.|++.+....... ..+.......+.+.++.+ .+..+..+. .||+||+||+.+ ++++.+|+++|+|||...+
T Consensus 76 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~l--~~~~~~~~~-----~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNF-DHPDAFDNDLMHRTLKNI--VEGKTVEVP-----TYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCT-TSGGGBCHHHHHHHHHHH--HTTCCEEEC-----CEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCC-CCcccccHHHHHHHHHHH--HCCCCeecc-----cccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 9999876432211 111111112234444443 344445554 499999999988 5888999999999998888
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEEcCC
Q 048718 685 DSSSSQLLLRALRREALEGVNICTVVHQP 713 (1118)
Q Consensus 685 D~~sa~~i~~~Lr~la~~G~TIIvvtHq~ 713 (1118)
|.. ++++ .+.+|++++|+.
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~~ 165 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDSD 165 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCHH
T ss_pred cHH--------HHHh--cCeEEEEECCHH
Confidence 763 2222 378999999973
No 87
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.74 E-value=2.1e-19 Score=228.68 Aligned_cols=171 Identities=17% Similarity=0.158 Sum_probs=119.4
Q ss_pred EEEEEe-----EEEEEcCCcceeeeeeEEEEeC-------CeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEe
Q 048718 512 EVAFKD-----LTITLKGKNKHLMRSVTGKLSP-------GRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKV 579 (1118)
Q Consensus 512 ~l~~kn-----Ls~~~~~~~k~IL~nVSl~I~~-------GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~ 579 (1118)
.|+++| |++.|. +++.|++|+++.+++ |++++|+||||||||||||+| |++. +
T Consensus 750 ~l~i~~~rHP~l~~~~~-~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~--~----------- 814 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFF-GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA--V----------- 814 (1022)
T ss_dssp CEEEEEECCCC-------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH--H-----------
T ss_pred eEEEEeccccEEEEEec-CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH--H-----------
Confidence 489999 988884 346799999999987 999999999999999999999 9874 1
Q ss_pred cChhhhcCeEE-EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH
Q 048718 580 ASIQSYKRIIG-FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQ 658 (1118)
Q Consensus 580 ~~~~~~r~~Ig-yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGE 658 (1118)
..++| ||||+.. .+||.|+|.. + +|+.+...... ..+|+++
T Consensus 815 ------~aqiG~~Vpq~~~---~l~v~d~I~~----r--------------------ig~~d~~~~~~-----stf~~em 856 (1022)
T 2o8b_B 815 ------MAQMGCYVPAEVC---RLTPIDRVFT----R--------------------LGASDRIMSGE-----STFFVEL 856 (1022)
T ss_dssp ------HHTTTCCEESSEE---EECCCSBEEE----E--------------------CC--------------CHHHHHH
T ss_pred ------HhheeEEeccCcC---CCCHHHHHHH----H--------------------cCCHHHHhhch-----hhhHHHH
Confidence 12355 9999863 4566665421 1 12221111111 2267766
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHHC-CCEEEEEEcCCcHHHHhccCcEEEEecCcEEE--
Q 048718 659 RKRVNVGLEMVMEPSLLILDEPTSGLDSSSS-QLLLRALRREALE-GVNICTVVHQPSYALFRMFDDLILLAKGGVIV-- 734 (1118)
Q Consensus 659 RQRVsIArALl~~P~lLlLDEPTsGLD~~sa-~~i~~~Lr~la~~-G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv-- 734 (1118)
+ ++++|++++++|+|+||||||+|+|+... ..++..|+.+.++ |.++|++||+++.. ...+|++.++ + |++.
T Consensus 857 ~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~-~~~~d~~~v~-~-g~~~~~ 932 (1022)
T 2o8b_B 857 S-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLV-EDYSQNVAVR-L-GHMACM 932 (1022)
T ss_dssp H-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHH-HHTSSCSSEE-E-EEEEEC
T ss_pred H-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HHhCCcceee-c-CeEEEE
Confidence 6 49999999999999999999999999985 5577888888876 99999999998754 4578888776 3 5776
Q ss_pred EecCh
Q 048718 735 YHGPV 739 (1118)
Q Consensus 735 ~~G~~ 739 (1118)
+.|++
T Consensus 933 ~~~~~ 937 (1022)
T 2o8b_B 933 VENEC 937 (1022)
T ss_dssp -----
T ss_pred EecCc
Confidence 44554
No 88
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.74 E-value=3e-18 Score=204.30 Aligned_cols=76 Identities=20% Similarity=0.270 Sum_probs=69.6
Q ss_pred CCC-CHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEe
Q 048718 652 RGI-SGGQRKRVNVGLEMVMEP--SLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLA 728 (1118)
Q Consensus 652 rgL-SGGERQRVsIArALl~~P--~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~ 728 (1118)
..| ||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |.|||+|||++.. ...+|++++|.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~--~~~~d~~~~~~ 471 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQI--AARAHHHYKVE 471 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHH--HHHSSEEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHH--HHhCCEEEEEe
Confidence 457 999999999999999999 99999999999999999999999999987 8999999999864 35799999996
Q ss_pred cC
Q 048718 729 KG 730 (1118)
Q Consensus 729 ~G 730 (1118)
++
T Consensus 472 ~~ 473 (517)
T 4ad8_A 472 KQ 473 (517)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 89
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.73 E-value=4.9e-21 Score=228.68 Aligned_cols=168 Identities=18% Similarity=0.184 Sum_probs=120.7
Q ss_pred cceeeeeeEE-EEeCCeEEEEECCCCCcHHHHHHH--HHcCCCCCCceeEEEECCEecCh--hhhcCeEEEEcCCCCCCC
Q 048718 526 NKHLMRSVTG-KLSPGRVSAVMGPSGAGKTTFLSA--LKGRVPGCIMSGTILVNGKVASI--QSYKRIIGFVPQDDIVHG 600 (1118)
Q Consensus 526 ~k~IL~nVSl-~I~~GEi~aIlGpnGSGKSTLLki--LaGl~~~~~~sG~I~inG~~~~~--~~~r~~IgyV~Qd~~l~~ 600 (1118)
+.++|++|++ .|++||+++|+||||||||||+++ ++|+.+ +.+|.|+++|.+... ...++.+||++|++...+
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~--~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~ 101 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE--FDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEG 101 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccC
Confidence 4679999999 999999999999999999999999 789986 468999999976321 233467899999754321
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 048718 601 NLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEP 680 (1118)
Q Consensus 601 ~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEP 680 (1118)
+ +.+ .... . .+ ...++++.++|.+..+..+.. |||| +|+++++|||
T Consensus 102 ~------l~~---~~~~-~-~~-----~~~~~l~~~~l~~~~~~~~~~-----LS~g-------------~~~~lilDe~ 147 (525)
T 1tf7_A 102 K------LFI---LDAS-P-DP-----EGQEVVGGFDLSALIERINYA-----IQKY-------------RARRVSIDSV 147 (525)
T ss_dssp S------EEE---EECC-C-CS-----SCCSCCSSHHHHHHHHHHHHH-----HHHH-------------TCSEEEEECS
T ss_pred c------EEE---EecC-c-cc-----chhhhhcccCHHHHHHHHHHH-----HHHc-------------CCCEEEECCH
Confidence 1 100 0000 0 00 011122333333333433332 6665 5789999999
Q ss_pred CC-----CCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHH--------HHhccCcEEEEec
Q 048718 681 TS-----GLDSSSSQLLLRALRREALEGVNICTVVHQPSYA--------LFRMFDDLILLAK 729 (1118)
Q Consensus 681 Ts-----GLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~--------i~~~~D~vivL~~ 729 (1118)
|+ +||+..+..+.++++.+++.|+|||+++|+++.. +..++|++++|.+
T Consensus 148 t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 148 TSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp TTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 98 4699999999999999987899999999999863 3345999999976
No 90
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.72 E-value=5.2e-18 Score=202.59 Aligned_cols=155 Identities=16% Similarity=0.142 Sum_probs=118.1
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHHHHHHHHh
Q 048718 534 TGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSAR 613 (1118)
Q Consensus 534 Sl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~ 613 (1118)
++.|.+|++++|+||||||||||++.|+|...+ .|+ +.+.|++|++. .++.+++ .+
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~--------------~vi~~~~ee~~----~~l~~~~---~~ 330 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA---NKE--------------RAILFAYEESR----AQLLRNA---YS 330 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTC--------------CEEEEESSSCH----HHHHHHH---HT
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCC--------------CEEEEEEeCCH----HHHHHHH---HH
Confidence 458999999999999999999999999998752 232 23567777642 1222222 11
Q ss_pred hccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----H
Q 048718 614 CRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSS-----S 688 (1118)
Q Consensus 614 lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~-----s 688 (1118)
. +.. +++ +..+|+.+..+..+. .|||||+||+.+|+++..+|++|++| ||+|||.. .
T Consensus 331 --~--g~~-------~~~-~~~~g~~~~~~~~p~-----~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 331 --W--GMD-------FEE-MERQNLLKIVCAYPE-----SAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp --T--SCC-------HHH-HHHTTSEEECCCCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred --c--CCC-------HHH-HHhCCCEEEEEeccc-----cCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 1 122 112 234666666666554 49999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEcCCc---------HHHHhccCcEEEEecC
Q 048718 689 SQLLLRALRREALEGVNICTVVHQPS---------YALFRMFDDLILLAKG 730 (1118)
Q Consensus 689 a~~i~~~Lr~la~~G~TIIvvtHq~~---------~~i~~~~D~vivL~~G 730 (1118)
+..+.++++.+++.|.|||+++|+.. ..+..++|++++|.++
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~g 443 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYV 443 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEE
Confidence 99999999998888999999999981 2345789999999763
No 91
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.71 E-value=1.5e-19 Score=205.67 Aligned_cols=191 Identities=13% Similarity=0.140 Sum_probs=136.3
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh----------
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---------- 582 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---------- 582 (1118)
++.+++++.|.. +..+|+++ +.|.+||+++|+|||||||||||++|+|+.+ ++.|.|.+.|++...
T Consensus 46 i~~~~l~~~~~t-g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~--~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 46 LLRQVIDQPFIL-GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS--ADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp TTCCCCCSEECC-SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred eeecccceecCC-CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC--CCEEEEEEecccHHHHHHHHHhhhh
Confidence 566778888852 46799999 9999999999999999999999999999997 678999998864211
Q ss_pred hhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 048718 583 QSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRV 662 (1118)
Q Consensus 583 ~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRV 662 (1118)
..+++.+.+++|.+. ...+.+.-.... ..+.+.+...+ .+... .. ..+..||+|| |||
T Consensus 122 ~~~~~~v~~~~~~~~-----~~~~r~~~~~~~------------~~~ae~~~~~~-~~vl~-~l--d~~~~lS~g~-r~v 179 (347)
T 2obl_A 122 STLSKCVLVVTTSDR-----PALERMKAAFTA------------TTIAEYFRDQG-KNVLL-MM--DSVTRYARAA-RDV 179 (347)
T ss_dssp HHHTTEEEEEECTTS-----CHHHHHHHHHHH------------HHHHHHHHTTT-CEEEE-EE--ETHHHHHHHH-HHH
T ss_pred hhhhceEEEEECCCC-----CHHHHHHHHHHH------------HHHHHHHHhcc-ccHHH-HH--hhHHHHHHHH-HHH
Confidence 124556888888542 233332211100 00111111111 11110 00 1123499999 899
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--CCC-----EEEEEEcCCcHHHHhccCcEEEEecCcEEEE
Q 048718 663 NVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREAL--EGV-----NICTVVHQPSYALFRMFDDLILLAKGGVIVY 735 (1118)
Q Consensus 663 sIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~--~G~-----TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~ 735 (1118)
++| +.+|++ |+|||+....++.+.++++.+ .|. ||++++||++. .++|++++|.+ |+++.
T Consensus 180 ~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~~---~i~d~v~~i~d-G~Ivl 246 (347)
T 2obl_A 180 GLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVND---PIGDEVRSILD-GHIVL 246 (347)
T ss_dssp HHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCCC---HHHHHHHHHCS-EEEEB
T ss_pred HHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCCC---hhhhheEEeeC-cEEEE
Confidence 999 688877 999999999999999998864 477 89999999983 56899999976 79999
Q ss_pred ecChhhH
Q 048718 736 HGPVKKV 742 (1118)
Q Consensus 736 ~G~~~~l 742 (1118)
.|+..++
T Consensus 247 ~~~l~~~ 253 (347)
T 2obl_A 247 TRELAEE 253 (347)
T ss_dssp CHHHHTT
T ss_pred eCCHHHc
Confidence 8877654
No 92
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.71 E-value=6.5e-19 Score=187.37 Aligned_cols=165 Identities=15% Similarity=0.098 Sum_probs=106.6
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHH--cCCCCCCceeEEEECCEecCh--hhhcCeEEEEcCCCCCCCCCCHHHHHHH
Q 048718 535 GKLSPGRVSAVMGPSGAGKTTFLSALK--GRVPGCIMSGTILVNGKVASI--QSYKRIIGFVPQDDIVHGNLTVEENLWF 610 (1118)
Q Consensus 535 l~I~~GEi~aIlGpnGSGKSTLLkiLa--Gl~~~~~~sG~I~inG~~~~~--~~~r~~IgyV~Qd~~l~~~LTV~EnL~f 610 (1118)
+-|++|++++|+||||||||||+++|+ |+.. +..|.+.+++..... ....+.++|++|+....+.+++.+++..
T Consensus 25 Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 102 (251)
T 2ehv_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE--YGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSS 102 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC----
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccc
Confidence 378999999999999999999999999 6633 246777777653221 1223457788777655555555554332
Q ss_pred HHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC-----
Q 048718 611 SARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLD----- 685 (1118)
Q Consensus 611 ~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD----- 685 (1118)
..... . ...... . ...+.++..+...+..-..+|+++++||||++||
T Consensus 103 ~~~~~------~----~~~~~~-------------~-----~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~ 154 (251)
T 2ehv_A 103 VVGLP------S----EEKFVL-------------E-----DRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEE 154 (251)
T ss_dssp -------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSG
T ss_pred ccccc------c----ccceec-------------c-----CcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCH
Confidence 11100 0 000000 0 0133455554445555568999999999999998
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHH--------Hhcc-CcEEEEec
Q 048718 686 SSSSQLLLRALRREALEGVNICTVVHQPSYAL--------FRMF-DDLILLAK 729 (1118)
Q Consensus 686 ~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i--------~~~~-D~vivL~~ 729 (1118)
+..+..+.++++.+++.|+|||+++|+.+... ..++ |++++|.+
T Consensus 155 ~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 155 RKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp GGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 67777799999888877999999999987641 4678 99999963
No 93
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.71 E-value=3.1e-17 Score=205.27 Aligned_cols=135 Identities=25% Similarity=0.384 Sum_probs=110.5
Q ss_pred CCCHHHHHHHHHhhccCCC---CCH---HHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhhCC-
Q 048718 601 NLTVEENLWFSARCRLSAD---LPK---AEKVLVVERVIESLGLQHI-RDSLVGTVEKRGISGGQRKRVNVGLEMVMEP- 672 (1118)
Q Consensus 601 ~LTV~EnL~f~a~lr~~~~---~~~---~~~~~~v~~lL~~lgL~~~-~dt~vg~~~~rgLSGGERQRVsIArALl~~P- 672 (1118)
.|||.|++.|...+.++.. ... .+...++ +.|+.+||.+. .++.+++ |||||||||.||++|.++|
T Consensus 451 ~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~t-----LSGGEkQRV~LA~aL~~~~~ 524 (972)
T 2r6f_A 451 AMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGT-----LSGGEAQRIRLATQIGSRLT 524 (972)
T ss_dssp TSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGG-----CCHHHHHHHHHHHHHTTCCC
T ss_pred hCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCcccc-----CCHHHHHHHHHHHHHhhCCC
Confidence 5899999999765532210 000 2233445 35889999865 6888876 9999999999999999985
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEe-----cCcEEEEecChhhHH
Q 048718 673 -SLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLA-----KGGVIVYHGPVKKVE 743 (1118)
Q Consensus 673 -~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~-----~GG~iv~~G~~~~l~ 743 (1118)
+||||||||+|||+.....++++|++|...|.|||+|+|+++. + +.+|++++|. +||++++.|+++++.
T Consensus 525 ~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~-i-~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 525 GVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDT-M-LAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp SCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHH-H-HSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred CCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-H-HhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 9999999999999999999999999998889999999999864 3 6799999994 578999999998753
No 94
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.69 E-value=4.3e-17 Score=204.59 Aligned_cols=132 Identities=23% Similarity=0.340 Sum_probs=109.3
Q ss_pred CCCCHHHHHHHHHhhccCCCCCH----------HHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHH
Q 048718 600 GNLTVEENLWFSARCRLSADLPK----------AEKVLVVERVIESLGLQHI-RDSLVGTVEKRGISGGQRKRVNVGLEM 668 (1118)
Q Consensus 600 ~~LTV~EnL~f~a~lr~~~~~~~----------~~~~~~v~~lL~~lgL~~~-~dt~vg~~~~rgLSGGERQRVsIArAL 668 (1118)
..+||.|.+.|...+. ++. .+...++ +.|+.+||... .++.+++ |||||||||.||++|
T Consensus 467 ~~ltV~e~l~f~enl~----l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~~t-----LSGGEkQRV~LA~aL 536 (993)
T 2ygr_A 467 CELSIADCADFLNALT----LGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAAAT-----LSGGEAQRIRLATQI 536 (993)
T ss_dssp SHHHHHHHHHTTTTTT----SCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBGGG-----CCHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHhcC----CCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCccc-----CCHHHHHHHHHHHHH
Confidence 4579999998843332 222 2233444 35788999865 6888776 999999999999999
Q ss_pred hhC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEe-----cCcEEEEecChhh
Q 048718 669 VME--PSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLA-----KGGVIVYHGPVKK 741 (1118)
Q Consensus 669 l~~--P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~-----~GG~iv~~G~~~~ 741 (1118)
.++ |+||||||||+|||+.....+++.|++|.+.|.|||+|+|+++. .+.+|++++|. +||++++.|++++
T Consensus 537 ~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~--i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e 614 (993)
T 2ygr_A 537 GSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDT--IEHADWIVDIGPGAGEHGGRIVHSGPYDE 614 (993)
T ss_dssp TTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH--HHTCSEEEEECSSSGGGCCSCCEEECHHH
T ss_pred hhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHH--HHhCCEEEEecCccccCCCEEEEeeCHHH
Confidence 999 58999999999999999999999999998889999999999864 36799999994 5789999999987
Q ss_pred HH
Q 048718 742 VE 743 (1118)
Q Consensus 742 l~ 743 (1118)
+.
T Consensus 615 ~~ 616 (993)
T 2ygr_A 615 LL 616 (993)
T ss_dssp HH
T ss_pred hh
Confidence 64
No 95
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.69 E-value=4.4e-17 Score=205.41 Aligned_cols=166 Identities=15% Similarity=0.135 Sum_probs=114.7
Q ss_pred EEEEEeEEEEEcC---CcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHH--------cCCCCCCceeEEEECCEec
Q 048718 512 EVAFKDLTITLKG---KNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALK--------GRVPGCIMSGTILVNGKVA 580 (1118)
Q Consensus 512 ~l~~knLs~~~~~---~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLa--------Gl~~~~~~sG~I~inG~~~ 580 (1118)
.+.+++...-+-. +.+.|++|+++.+.+|++++|+||||||||||||+|+ |..- |.++.
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~v--pa~~~-------- 700 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFV--PCESA-------- 700 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCB--SEEEE--------
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcc--ccccc--------
Confidence 3556554432211 2357999999999999999999999999999999993 4322 11111
Q ss_pred ChhhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 048718 581 SIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRK 660 (1118)
Q Consensus 581 ~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQ 660 (1118)
.++.+ +.+ +..+|+.+ .. .+++|+|+++
T Consensus 701 -------~~~~~---d~i----------------------------------~~~ig~~d---~l-----~~~lStf~~e 728 (934)
T 3thx_A 701 -------EVSIV---DCI----------------------------------LARVGAGD---SQ-----LKGVSTFMAE 728 (934)
T ss_dssp -------EEECC---SEE----------------------------------EEECC-----------------CHHHHH
T ss_pred -------cchHH---HHH----------------------------------HHhcCchh---hH-----HHhHhhhHHH
Confidence 01110 001 11122211 11 1348999999
Q ss_pred HHHHHHHH--hhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEe
Q 048718 661 RVNVGLEM--VMEPSLLILDEPTSGLDSSSSQLL-LRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYH 736 (1118)
Q Consensus 661 RVsIArAL--l~~P~lLlLDEPTsGLD~~sa~~i-~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~ 736 (1118)
++.+|++| +++|+|+||||||+|||+.....+ ..+++.+.+ .|.++|++||+.+ +.+++|++..+.+ |++...
T Consensus 729 ~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~e--l~~lad~~~~v~n-g~v~~~ 805 (934)
T 3thx_A 729 MLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHE--LTALANQIPTVNN-LHVTAL 805 (934)
T ss_dssp HHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGG--GGGGGGTCTTEEE-EEEEEE
T ss_pred HHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHH--HHHHhcccceeEe-eEEEEE
Confidence 88888888 999999999999999999999888 566777776 4999999999965 4478999988876 688887
Q ss_pred cChhhH
Q 048718 737 GPVKKV 742 (1118)
Q Consensus 737 G~~~~l 742 (1118)
++.+++
T Consensus 806 ~~~~~l 811 (934)
T 3thx_A 806 TTEETL 811 (934)
T ss_dssp EETTEE
T ss_pred ecCCcE
Confidence 776543
No 96
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.69 E-value=2e-19 Score=200.63 Aligned_cols=164 Identities=13% Similarity=0.061 Sum_probs=86.3
Q ss_pred EeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcC-CCCCCceeEEEECCEecChhhhcCeEEEEcC
Q 048718 516 KDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGR-VPGCIMSGTILVNGKVASIQSYKRIIGFVPQ 594 (1118)
Q Consensus 516 knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl-~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Q 594 (1118)
.||++.| +++.++++++|+| +|+||||+|||||++.|.|. .. +.+| |.++|.+.....-.+.++|++|
T Consensus 2 ~~l~~~~--~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q 70 (301)
T 2qnr_A 2 SNLPNQV--HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIE 70 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC
T ss_pred CCCcceE--CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEec
Confidence 3677788 3568999999998 99999999999999999997 54 5788 8888876532222356899999
Q ss_pred CCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCE
Q 048718 595 DDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSL 674 (1118)
Q Consensus 595 d~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~l 674 (1118)
++.+...+||.|++.++..... .+.....++.+. +..+.++. ++|||||||+.+||+++ +
T Consensus 71 ~~~~~~~ltv~Dt~g~~~~~~~-----~e~~~~l~~~l~------~~~~~~~~-----~~sgg~rqrv~~ara~~----l 130 (301)
T 2qnr_A 71 ERGVKLRLTVVDTPGYGDAINC-----RDCFKTIISYID------EQFERYLH-----DESGLNRRHIIDNRVHC----C 130 (301)
T ss_dssp ---CCEEEEEEEEC----------------CTTHHHHHH------HHHHHHHH-----HHTSSCCTTCCCCCCCE----E
T ss_pred CCCcccCcchhhhhhhhhhcCc-----HHHHHHHHHHHH------HHHHHHHH-----HhCHHhhhhhhhhhhhh----e
Confidence 9888888999999887643210 000011122221 22344444 49999999999999886 9
Q ss_pred EEEeCCCC-CCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCCc
Q 048718 675 LILDEPTS-GLDSSSSQLLLRALRREALE-GVNICTVVHQPS 714 (1118)
Q Consensus 675 LlLDEPTs-GLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~~ 714 (1118)
|++||||+ |||+... +.++.+... +.++|++.||+.
T Consensus 131 l~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 131 FYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp EEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred eeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 99999998 5999873 455555543 778888899864
No 97
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.68 E-value=4.2e-18 Score=178.89 Aligned_cols=152 Identities=20% Similarity=0.192 Sum_probs=95.4
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-----ceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHHHHH
Q 048718 535 GKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCI-----MSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLW 609 (1118)
Q Consensus 535 l~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~-----~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~ 609 (1118)
+-|++||+++|+||||||||||+++|+|...+.+ ..|.|++++.... ..+.+++++|+..+++. ||.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---CHHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---CHHHHHHHHHHcCCCHH-HHhhcEE
Confidence 4689999999999999999999999999654212 2346666654210 01123344443333322 3333322
Q ss_pred HHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH-HHHHHHHHHHhh-------CCCEEEEeCCC
Q 048718 610 FSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQ-RKRVNVGLEMVM-------EPSLLILDEPT 681 (1118)
Q Consensus 610 f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGE-RQRVsIArALl~-------~P~lLlLDEPT 681 (1118)
+. +..++++ ++++..+++++. +|+++++||||
T Consensus 96 ~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 96 VA----------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp EE----------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred EE----------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 11 1133333 333555555555 99999999999
Q ss_pred CCCCHH-------H-----HHHHHHHHHHHHH-CCCEEEEEEcCCcH---HHHhccCcEEEEecC
Q 048718 682 SGLDSS-------S-----SQLLLRALRREAL-EGVNICTVVHQPSY---ALFRMFDDLILLAKG 730 (1118)
Q Consensus 682 sGLD~~-------s-----a~~i~~~Lr~la~-~G~TIIvvtHq~~~---~i~~~~D~vivL~~G 730 (1118)
++||+. . ..++++.|+++++ .|.|||+++|.... .+...+|.+++|.++
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 999984 1 2367888888775 49999999995442 255788999999764
No 98
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.67 E-value=1.2e-19 Score=189.63 Aligned_cols=146 Identities=20% Similarity=0.234 Sum_probs=115.0
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCC--CCCCHHHHHHHHHhh
Q 048718 537 LSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVH--GNLTVEENLWFSARC 614 (1118)
Q Consensus 537 I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~--~~LTV~EnL~f~a~l 614 (1118)
.++|++++|+||||||||||+++|+|++. + .++|++|++.++ ..+|+.+++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~--~-------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~- 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG--E-------------------RVALLPMDHYYKDLGHLPLEERLRVNYD- 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG--G-------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT-
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC--C-------------------CeEEEecCccccCcccccHHHhcCCCCC-
Confidence 46899999999999999999999999864 1 489999999887 56899998765321
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH----HHHHHHHHHHhhCCCEEEEeCCCCC-------
Q 048718 615 RLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQ----RKRVNVGLEMVMEPSLLILDEPTSG------- 683 (1118)
Q Consensus 615 r~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGE----RQRVsIArALl~~P~lLlLDEPTsG------- 683 (1118)
.+... ....+.++++.+++.+..+.++.+ +|+|| +||+++|++++.+|+++++||||++
T Consensus 61 -~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~-----~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 61 -HPDAF----DLALYLEHAQALLRGLPVEMPVYD-----FRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp -SGGGB----CHHHHHHHHHHHHTTCCEEECCEE-----TTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred -Chhhh----hHHHHHHHHHHHHcCCCcCCCccc-----CcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 11111 123466778888887766655443 99996 4789999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHH-HCCCEEEEEEcCCc
Q 048718 684 LDSSSSQLLLRALRREA-LEGVNICTVVHQPS 714 (1118)
Q Consensus 684 LD~~sa~~i~~~Lr~la-~~G~TIIvvtHq~~ 714 (1118)
||+.....+.+.+++.. ..|.|++.++|+..
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999888764 56999999999843
No 99
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.67 E-value=7.6e-18 Score=184.47 Aligned_cols=131 Identities=15% Similarity=0.200 Sum_probs=97.9
Q ss_pred eeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc-eeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHH
Q 048718 528 HLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIM-SGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEE 606 (1118)
Q Consensus 528 ~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~-sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~E 606 (1118)
++|++++ +++|++++|+|||||||||||++|+|+++ +. +|+|.++|.++ .|++|+..-+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i---------~~~~~~~~~~------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPI---------EYVFKHKKSI------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSC---------CSCCCCSSSE-------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcc---------eeecCCccee-------
Confidence 4899999 89999999999999999999999999987 56 89999988653 2333321100
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048718 607 NLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDS 686 (1118)
Q Consensus 607 nL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~ 686 (1118)
. .. ..+|+.. . .+ |++||++|..+|++|++|||| |+
T Consensus 75 -------v--~q---------------~~~gl~~------~-----~l------~~~la~aL~~~p~illlDEp~---D~ 110 (261)
T 2eyu_A 75 -------V--NQ---------------REVGEDT------K-----SF------ADALRAALREDPDVIFVGEMR---DL 110 (261)
T ss_dssp -------E--EE---------------EEBTTTB------S-----CH------HHHHHHHHHHCCSEEEESCCC---SH
T ss_pred -------e--eH---------------HHhCCCH------H-----HH------HHHHHHHHhhCCCEEEeCCCC---CH
Confidence 0 00 0123321 1 12 899999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEe
Q 048718 687 SSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLA 728 (1118)
Q Consensus 687 ~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~ 728 (1118)
.+...++ +. +..|.+|++++|+.+ ....+|++++|.
T Consensus 111 ~~~~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~ 146 (261)
T 2eyu_A 111 ETVETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTS
T ss_pred HHHHHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhc
Confidence 8866544 33 356999999999987 347788888774
No 100
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.66 E-value=5.5e-18 Score=213.06 Aligned_cols=145 Identities=15% Similarity=0.148 Sum_probs=99.4
Q ss_pred cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHH
Q 048718 526 NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVE 605 (1118)
Q Consensus 526 ~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~ 605 (1118)
++.|++||++.+++|++++|+||||||||||||+|+++... ...|. .+... ...+++ -+.++..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~-aq~g~------~vpa~--~~~i~~---~d~i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM-AQIGS------YVPAE--EATIGI---VDGIFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH-HHHTC------CBSSS--EEEEEC---CSEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH-hhcCc------cccch--hhhhhH---HHHHHHhCChH
Confidence 46799999999999999999999999999999999875310 00110 00000 011221 11122222222
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048718 606 ENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLD 685 (1118)
Q Consensus 606 EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD 685 (1118)
+++ .... ..+|+||+|++.|+++ +++|+|+||||||+|||
T Consensus 727 d~l----------------------------------~~~~-----stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 727 DNI----------------------------------YKGR-----STFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred HHH----------------------------------HHhH-----HHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 211 1112 2389999999999999 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHH-CCCEEEEEEcCCcHHHHhccCcE
Q 048718 686 SSSSQLLL-RALRREAL-EGVNICTVVHQPSYALFRMFDDL 724 (1118)
Q Consensus 686 ~~sa~~i~-~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~v 724 (1118)
+.....+. .+++.+.+ .|.|+|++||+++. .+++|+.
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el--~~l~~~~ 805 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPPV--CELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGGG--GGHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHH--HHHHhhc
Confidence 99999998 67777765 59999999999764 3556543
No 101
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.65 E-value=4.4e-18 Score=190.33 Aligned_cols=149 Identities=17% Similarity=0.160 Sum_probs=108.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-------hhh--cCeEEEEcCCCCCCCCCCHHHHHH
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-------QSY--KRIIGFVPQDDIVHGNLTVEENLW 609 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-------~~~--r~~IgyV~Qd~~l~~~LTV~EnL~ 609 (1118)
+|++++|+||||||||||++.|+|+++ +.+|+|.++|.+... ..+ +..++|++|++.++|.+||+|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~--~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ--NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 699999999999999999999999997 579999999987531 112 346899999999999899999998
Q ss_pred HHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 048718 610 FSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSS 689 (1118)
Q Consensus 610 f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa 689 (1118)
++.... .. ..+++..|+.+..+.. ++..++||++|||+|+.+|+.++| .||+.+.
T Consensus 179 ~~~~~~--~d----------~~llDt~G~~~~~~~~--------~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 179 AMKARG--YD----------LLFVDTAGRLHTKHNL--------MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHHHT--CS----------EEEECCCCCCTTCHHH--------HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHhCC--CC----------EEEecCCCCCCchHHH--------HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 764211 00 0123334444333222 455669999999999999994444 4555555
Q ss_pred HHHHHHHHHHHHC-CCEEEEEEcCCc
Q 048718 690 QLLLRALRREALE-GVNICTVVHQPS 714 (1118)
Q Consensus 690 ~~i~~~Lr~la~~-G~TIIvvtHq~~ 714 (1118)
.++++.++.+.+. |.|+|++||+..
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 5666667777654 899999999843
No 102
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.65 E-value=3.2e-16 Score=157.91 Aligned_cols=76 Identities=32% Similarity=0.373 Sum_probs=69.0
Q ss_pred CCCCCHHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcE
Q 048718 651 KRGISGGQRKRVNVG------LEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDL 724 (1118)
Q Consensus 651 ~rgLSGGERQRVsIA------rALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~v 724 (1118)
+..|||||||||+|| ++|+.+|++|||||||+|||+.++..+.+.|+++..+|.|||++||+.. +.+.+|++
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~--~~~~~d~i 132 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADHV 132 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSEE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH--HHHhCCEE
Confidence 345999999999876 8999999999999999999999999999999998767899999999984 45889999
Q ss_pred EEEe
Q 048718 725 ILLA 728 (1118)
Q Consensus 725 ivL~ 728 (1118)
++|.
T Consensus 133 i~l~ 136 (148)
T 1f2t_B 133 IRIS 136 (148)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9995
No 103
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.64 E-value=2.6e-17 Score=204.06 Aligned_cols=144 Identities=19% Similarity=0.177 Sum_probs=105.7
Q ss_pred EEEEEeEEEEEcC-CcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEE
Q 048718 512 EVAFKDLTITLKG-KNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIG 590 (1118)
Q Consensus 512 ~l~~knLs~~~~~-~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 590 (1118)
.+.+++...-+-. +++.+++|++++ |++++|+||||||||||||+|+|+... +..|.+. . ..+..++
T Consensus 550 ~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~v------p--a~~~~i~ 617 (765)
T 1ewq_A 550 RLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSFV------P--AEEAHLP 617 (765)
T ss_dssp SEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCCB------S--SSEEEEC
T ss_pred cEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCcee------e--hhcccee
Confidence 3566665322211 335799999998 999999999999999999999998521 2345431 1 1234578
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH--
Q 048718 591 FVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEM-- 668 (1118)
Q Consensus 591 yV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArAL-- 668 (1118)
+++| +++.+++.||+.+ ++|+|+++++.++++|
T Consensus 618 ~v~~---i~~~~~~~d~l~~------------------------------------------g~S~~~~e~~~la~il~~ 652 (765)
T 1ewq_A 618 LFDG---IYTRIGASDDLAG------------------------------------------GKSTFMVEMEEVALILKE 652 (765)
T ss_dssp CCSE---EEEECCC------------------------------------------------CCSHHHHHHHHHHHHHHH
T ss_pred eHHH---hhccCCHHHHHHh------------------------------------------cccHHHHHHHHHHHHHHh
Confidence 8776 5566676665421 3789999999999999
Q ss_pred hhCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHHHHCCCEEEEEEcCCcH
Q 048718 669 VMEPSLLILDEP---TSGLDSSSS-QLLLRALRREALEGVNICTVVHQPSY 715 (1118)
Q Consensus 669 l~~P~lLlLDEP---TsGLD~~sa-~~i~~~Lr~la~~G~TIIvvtHq~~~ 715 (1118)
+++|+++||||| |++||..+. ..+++.|++ .|.++|++||+.+.
T Consensus 653 a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~l 700 (765)
T 1ewq_A 653 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFEL 700 (765)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHHH
T ss_pred ccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHHH
Confidence 999999999999 999998875 567777765 58999999999754
No 104
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.64 E-value=9.2e-16 Score=178.62 Aligned_cols=75 Identities=20% Similarity=0.341 Sum_probs=67.6
Q ss_pred CCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEe
Q 048718 653 GISGGQRKRVNVGLEMV----MEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLA 728 (1118)
Q Consensus 653 gLSGGERQRVsIArALl----~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~ 728 (1118)
.||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++..+|.++|++||+.. +...+|++++|.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~--~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNT--MFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHH--HHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHH--HHHhCCEEEEEE
Confidence 49999999999999999 589999999999999999999999999987655889999999954 457899999987
Q ss_pred c
Q 048718 729 K 729 (1118)
Q Consensus 729 ~ 729 (1118)
.
T Consensus 411 ~ 411 (430)
T 1w1w_A 411 R 411 (430)
T ss_dssp E
T ss_pred E
Confidence 4
No 105
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.62 E-value=6.6e-18 Score=205.20 Aligned_cols=191 Identities=18% Similarity=0.215 Sum_probs=116.3
Q ss_pred EEEEEeEEEEEcCCcceeeeee----------EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC
Q 048718 512 EVAFKDLTITLKGKNKHLMRSV----------TGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS 581 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nV----------Sl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~ 581 (1118)
.+.++||+..|..+.+++|+.+ ++.++. ++|+|||||||||||++|+|+..| ..+|.|+++|.++.
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEE
Confidence 3677888888853223444443 255543 999999999999999999999862 26999999998742
Q ss_pred ------hhhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCC
Q 048718 582 ------IQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGIS 655 (1118)
Q Consensus 582 ------~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLS 655 (1118)
...+++.+||++|++.+++.+||+||+.++........ .+ +|
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~----------------~~----------------~s 133 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG----------------MG----------------IS 133 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS----------------SC----------------CC
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc----------------cc----------------cc
Confidence 13467889999999999999999999988643211000 01 11
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHHC--CCEEEEEEcCCcHH------HHhcc
Q 048718 656 GGQRKRVNVGLEMVMEPSLLILDEP------TSGLDSSSSQLLLRALRREALE--GVNICTVVHQPSYA------LFRMF 721 (1118)
Q Consensus 656 GGERQRVsIArALl~~P~lLlLDEP------TsGLD~~sa~~i~~~Lr~la~~--G~TIIvvtHq~~~~------i~~~~ 721 (1118)
++++.++.+....|+++++||| |+|||+..+..+.++++++..+ +.++++++|+.+.+ +.+..
T Consensus 134 ---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v 210 (608)
T 3szr_A 134 ---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEV 210 (608)
T ss_dssp ---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHH
T ss_pred ---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHH
Confidence 1222233334458999999999 9999999999999999997533 67888999997632 22222
Q ss_pred -----CcEEEEecCcEEEEecChhhH
Q 048718 722 -----DDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 722 -----D~vivL~~GG~iv~~G~~~~l 742 (1118)
..++|+.+ +.++..|+.+++
T Consensus 211 ~~~g~rtI~VlTK-~Dlv~~g~~~~~ 235 (608)
T 3szr_A 211 DPEGDRTIGILTK-PDLVDKGTEDKV 235 (608)
T ss_dssp CSSCCSEEEEEEC-GGGSSSSSTTCC
T ss_pred hhcCCceEEEecc-hhhcCcccHHHH
Confidence 23556655 345566655443
No 106
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.58 E-value=2.3e-15 Score=164.92 Aligned_cols=152 Identities=19% Similarity=0.221 Sum_probs=104.8
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhc
Q 048718 536 KLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCR 615 (1118)
Q Consensus 536 ~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr 615 (1118)
-+++|++++|+||||||||||++.|++... .|.+. .|.... ....+.|+..++... .+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~~-~g~~~~---~~~~v~~~~~e~~~~---~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPDL-LEVGEL---PTGPVIYLPAEDPPT---AIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCCT-TCCCCC---CCCCEEEEESSSCHH---HHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCCc-CCCccC---CCccEEEEECCCCHH---HHHHHHH---HHH
Confidence 368999999999999999999999998553 45553 343321 134578876654220 1111111 111
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHHH---H
Q 048718 616 LSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTS--GLDSSSS---Q 690 (1118)
Q Consensus 616 ~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTs--GLD~~sa---~ 690 (1118)
..... ...+++++.+++.+..+..+.. ||+||+|++ ++++.+|+++++||||+ ++|.... .
T Consensus 92 --~~~~~----~~~~~~~~~l~l~~~~~~~~~~-----ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 --AHLSA----EERQAVADGLLIQPLIGSLPNI-----MAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp --TTSCH----HHHHHHHHHEEECCCTTSCCCT-----TSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred --hhcCh----hhhhhccCceEEeecCCCCccc-----CCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 11222 2356678888887766655544 999998865 68889999999999999 9997544 7
Q ss_pred HHHHHHHHHHH-CCCEEEEEEcCCcH
Q 048718 691 LLLRALRREAL-EGVNICTVVHQPSY 715 (1118)
Q Consensus 691 ~i~~~Lr~la~-~G~TIIvvtHq~~~ 715 (1118)
++++.|+.+++ .|.|||+++|+...
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~~ 183 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASKG 183 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC---
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCCc
Confidence 88888988874 59999999999753
No 107
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.58 E-value=1.1e-16 Score=167.51 Aligned_cols=167 Identities=12% Similarity=0.119 Sum_probs=108.5
Q ss_pred ceeeeeeEE-EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhc---CeEEEEcCCCCCCCCC
Q 048718 527 KHLMRSVTG-KLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYK---RIIGFVPQDDIVHGNL 602 (1118)
Q Consensus 527 k~IL~nVSl-~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r---~~IgyV~Qd~~l~~~L 602 (1118)
.+.|+++.+ .+++|++++|+||||||||||++.|++... +..|.|.+.+.+.....++ ..+++.+|+.... .+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 85 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KL 85 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TE
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CE
Confidence 456788875 899999999999999999999999998764 3456665544322211111 0112222110000 00
Q ss_pred CHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCC
Q 048718 603 TVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPS--LLILDEP 680 (1118)
Q Consensus 603 TV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~--lLlLDEP 680 (1118)
.+ ++.....++ ...+ ....|.++.++...+.+...+|+ ++++|||
T Consensus 86 ~~------------------------~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~ 132 (235)
T 2w0m_A 86 II------------------------IDALMKEKE-----DQWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSV 132 (235)
T ss_dssp EE------------------------EECCC---------CTTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETG
T ss_pred EE------------------------EeccccccC-----ceee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECc
Confidence 00 000000000 0011 12359999999888888888999 9999999
Q ss_pred CCCC--CHHHHHHHHHHHHHHHH-CCCEEEEEEcCCc-------HHHHhccCcEEEEec
Q 048718 681 TSGL--DSSSSQLLLRALRREAL-EGVNICTVVHQPS-------YALFRMFDDLILLAK 729 (1118)
Q Consensus 681 TsGL--D~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~-------~~i~~~~D~vivL~~ 729 (1118)
|+++ |+....++++.|+++++ .|.|||+++|+.. ..+.+.+|++++|.+
T Consensus 133 ~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 133 SALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRR 191 (235)
T ss_dssp GGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred hHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEE
Confidence 9888 99999999999999875 5999999999983 236678999999975
No 108
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.58 E-value=5.3e-16 Score=193.36 Aligned_cols=155 Identities=14% Similarity=0.070 Sum_probs=105.9
Q ss_pred cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHH
Q 048718 526 NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVE 605 (1118)
Q Consensus 526 ~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~ 605 (1118)
++.+++|+++. ++|++++|+||||||||||||+|+|+... ...| ..+.. .+..+++++| ++..+++.
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~-~q~G------~~vpa--~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALM-AYIG------SYVPA--QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHH-HTTT------CCBSS--SEEEECCCCE---EEEEEC--
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHH-HhcC------cccch--hcccceeHHH---HHhhCCHH
Confidence 45799999999 99999999999999999999999997421 0112 11111 1234666655 55566766
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 048718 606 ENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLD 685 (1118)
Q Consensus 606 EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD 685 (1118)
|++..+. ..+|+|++ +++.+..++++|+++|||||++|+|
T Consensus 661 d~l~~~~---------------------------------------stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd 700 (800)
T 1wb9_A 661 DDLASGR---------------------------------------STFMVEMT-ETANILHNATEYSLVLMDEIGRGTS 700 (800)
T ss_dssp ------------------------------------------------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSS
T ss_pred HHHHhhh---------------------------------------hhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCC
Confidence 6653210 11566665 4555556789999999999999999
Q ss_pred HHHHHHH-HHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEe
Q 048718 686 SSSSQLL-LRALRREAL-EGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYH 736 (1118)
Q Consensus 686 ~~sa~~i-~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~ 736 (1118)
+.....+ ...|+.+.+ .|.++|++||+.+. ..++|++..+.+ |++.+.
T Consensus 701 ~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el--~~l~d~~~~v~n-~~~~~~ 750 (800)
T 1wb9_A 701 TYDGLSLAWACAENLANKIKALTLFATHYFEL--TQLPEKMEGVAN-VHLDAL 750 (800)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG--GGHHHHSTTEEE-EEEEEE
T ss_pred hhHHHHHHHHHHHHHHhccCCeEEEEeCCHHH--HHHhhhhhceEE-EEEEEE
Confidence 9887776 677888877 49999999999864 367887666654 455543
No 109
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.57 E-value=1.8e-17 Score=171.90 Aligned_cols=176 Identities=15% Similarity=0.025 Sum_probs=98.9
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC---CCCceeEEEECCEecChhhhcCeE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVP---GCIMSGTILVNGKVASIQSYKRII 589 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~---~~~~sG~I~inG~~~~~~~~r~~I 589 (1118)
|+++||++.|. ..+|++ +.+.+|+.++|+|+||||||||++.|+|... ..++.|.+.+.+... +...+
T Consensus 4 l~~~~~~~~~~---~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~----~~~~~ 74 (210)
T 1pui_A 4 LNYQQTHFVMS---APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFE----VADGK 74 (210)
T ss_dssp -------CEEE---ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEE----EETTE
T ss_pred hhhhhhhheee---cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEE----ecCCE
Confidence 67899999994 367888 8889999999999999999999999999871 014566654422100 00001
Q ss_pred EEEcCCCCCC----CCCC---HHHHHHHHHhh-cc----------CCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcc
Q 048718 590 GFVPQDDIVH----GNLT---VEENLWFSARC-RL----------SADLPKAEKVLVVERVIESLGLQHI-RDSLVGTVE 650 (1118)
Q Consensus 590 gyV~Qd~~l~----~~LT---V~EnL~f~a~l-r~----------~~~~~~~~~~~~v~~lL~~lgL~~~-~dt~vg~~~ 650 (1118)
-++ +.+.+. +.-. .+..+...... +. ...... ....+.++++..++... ..+++..
T Consensus 75 ~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~v~nK~D~-- 149 (210)
T 1pui_A 75 RLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNIAVLVLLTKADK-- 149 (210)
T ss_dssp EEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTCCEEEEEECGGG--
T ss_pred EEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCCCeEEEEecccC--
Confidence 111 111100 0000 11112111110 00 011111 12234556666777643 2444443
Q ss_pred CCCCCHHHHHH-HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCE
Q 048718 651 KRGISGGQRKR-VNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVN 705 (1118)
Q Consensus 651 ~rgLSGGERQR-VsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~T 705 (1118)
+|+||||| +.++++++.+|.++++|||||+||.....++++.|.++..+|.|
T Consensus 150 ---~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 150 ---LASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp ---SCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred ---CCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 99999999 89999999999999999999999999999999999988765544
No 110
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.57 E-value=5.2e-17 Score=184.82 Aligned_cols=143 Identities=20% Similarity=0.186 Sum_probs=99.7
Q ss_pred eeeee-EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCce----eE-EEECCEecChhhhcCeEEEEcCCCCCCCCC
Q 048718 529 LMRSV-TGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMS----GT-ILVNGKVASIQSYKRIIGFVPQDDIVHGNL 602 (1118)
Q Consensus 529 IL~nV-Sl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~s----G~-I~inG~~~~~~~~r~~IgyV~Qd~~l~~~L 602 (1118)
.|+.+ .+.|++|++++|+||||||||||++.|++.....+.+ |. |+|++.... .++++++++|...+++.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-
Confidence 45555 5889999999999999999999999999987311344 67 888875421 13446666776554432
Q ss_pred CHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh-------hCCCEE
Q 048718 603 TVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMV-------MEPSLL 675 (1118)
Q Consensus 603 TV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl-------~~P~lL 675 (1118)
++.||+.+... . -|++++|++.++++++ .+|++|
T Consensus 195 ~v~~ni~~~~~------~---------------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 195 EVLKHIYVARA------F---------------------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp HHGGGEEEEEC------C---------------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred HHhhCEEEEec------C---------------------------------ChHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 44444322100 0 1455666666666666 689999
Q ss_pred EEeCCCCCCCHHH------------HHHHHHHHHHHHH-CCCEEEEEEcCCc
Q 048718 676 ILDEPTSGLDSSS------------SQLLLRALRREAL-EGVNICTVVHQPS 714 (1118)
Q Consensus 676 lLDEPTsGLD~~s------------a~~i~~~Lr~la~-~G~TIIvvtHq~~ 714 (1118)
++||||++||+.. ..++++.|+.+++ .|.|||+++|...
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 9999999999852 3566677777765 4899999999865
No 111
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.56 E-value=1.3e-17 Score=174.35 Aligned_cols=156 Identities=19% Similarity=0.156 Sum_probs=101.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-hhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCC
Q 048718 540 GRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-QSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSA 618 (1118)
Q Consensus 540 GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~ 618 (1118)
|++++|+||||||||||+++|+|+++ .+| |.++|..... ..+++.+||++|+. .... +++. +..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~---~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l~---~~~--- 65 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK---SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPLS---RVG--- 65 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH---HTT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEEE---ECC---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc---cCC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehhh---ccc---
Confidence 78999999999999999999999985 578 9998876532 34678899999975 2111 1110 000
Q ss_pred CCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHHH
Q 048718 619 DLPKAEKVLVVERVIESLGLQH-IRDSLVGTVEKRGISGGQRKRV-NVGL---EMVMEPSLLILDE--PTSGLDSSSSQL 691 (1118)
Q Consensus 619 ~~~~~~~~~~v~~lL~~lgL~~-~~dt~vg~~~~rgLSGGERQRV-sIAr---ALl~~P~lLlLDE--PTsGLD~~sa~~ 691 (1118)
++..+ ..+..++. ....+|+|||+++ ++++ |++.+|+|||+|| ||..+|.....
T Consensus 66 -----------------~~~~~~~~~~~v~~-~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~- 126 (189)
T 2i3b_A 66 -----------------LEPPPGKRECRVGQ-YVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQ- 126 (189)
T ss_dssp -----------------CCCCSSSCCEESSS-SEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHH-
T ss_pred -----------------ccCCccccccccce-EEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHH-
Confidence 01111 01123332 2335999999998 4454 5899999999999 89889987544
Q ss_pred HHHHHHHHHHCCCEEEE--E--EcCCcHHHHhccCcEEEEecCcEEEEe
Q 048718 692 LLRALRREALEGVNICT--V--VHQPSYALFRMFDDLILLAKGGVIVYH 736 (1118)
Q Consensus 692 i~~~Lr~la~~G~TIIv--v--tHq~~~~i~~~~D~vivL~~GG~iv~~ 736 (1118)
.|+++.+...++|+ + +|+.+. .+.|++..+. +|+++.-
T Consensus 127 ---~l~~~l~~~~~~ilgti~vsh~~~~---~~vd~i~~~~-~~~i~~~ 168 (189)
T 2i3b_A 127 ---AVRQTLSTPGTIILGTIPVPKGKPL---ALVEEIRNRK-DVKVFNV 168 (189)
T ss_dssp ---HHHHHHHCSSCCEEEECCCCCSSCC---TTHHHHHTTC-CSEEEEC
T ss_pred ---HHHHHHhCCCcEEEEEeecCCCCch---HHHHHHeecC-CcEEEEe
Confidence 44444444555554 2 388641 3556666664 4676653
No 112
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.55 E-value=1.4e-16 Score=185.32 Aligned_cols=164 Identities=20% Similarity=0.130 Sum_probs=98.7
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEE
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGF 591 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 591 (1118)
.|.++||++.|. ++.+|++++|+| +|+|+||+|||||+++|+|...+.+..|.+.+++.. ....+.++|
T Consensus 11 ~l~~~~l~~~y~--~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~---t~~~~~i~~ 79 (418)
T 2qag_C 11 YVGFANLPNQVY--RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK---TVQVEQSKV 79 (418)
T ss_dssp ----CCCCCCTT--TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC--------CCEEEEEEC
T ss_pred cEEEEecceeEC--CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc---ceeeeeEEE
Confidence 478899998884 467999999998 999999999999999999997521222222222111 112356899
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 048718 592 VPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVME 671 (1118)
Q Consensus 592 V~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~ 671 (1118)
++|++.+++.+||.||+.++.... .......+.+.++. .++.+++||++|||+++.+
T Consensus 80 v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~~~~i~~~i~~-----------------~~~~~l~qr~~IaRal~~d 136 (418)
T 2qag_C 80 LIKEGGVQLLLTIVDTPGFGDAVD------NSNCWQPVIDYIDS-----------------KFEDYLNAESRVNRRQMPD 136 (418)
T ss_dssp C------CEEEEEEECC-----------------CHHHHHHHHH-----------------HHHHHTTTSCC-CCCCCCC
T ss_pred EEecCCcccceeeeechhhhhhcc------chhhHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhccC
Confidence 999988888899999998864321 00100111111210 2567788999999999999
Q ss_pred CC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCc
Q 048718 672 PS---LLILDEPT-SGLDSSSSQLLLRALRREALEGVNICTVVHQPS 714 (1118)
Q Consensus 672 P~---lLlLDEPT-sGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~ 714 (1118)
|+ +|++|||| .|||+... +.++.+. .+.+||+++|..+
T Consensus 137 ~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~~v~iIlVinK~D 178 (418)
T 2qag_C 137 NRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-EKVNIIPLIAKAD 178 (418)
T ss_dssp C-CCEEEEECCC-CCSCCHHHH----HHHHHHT-TTSEEEEEEESTT
T ss_pred CCeeEEEEEecCcccCCCHHHH----HHHHHHh-ccCcEEEEEEccc
Confidence 99 99999999 69998863 3344443 4788999988755
No 113
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.54 E-value=1.2e-15 Score=174.29 Aligned_cols=126 Identities=18% Similarity=0.224 Sum_probs=87.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc-eeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhh
Q 048718 536 KLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIM-SGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARC 614 (1118)
Q Consensus 536 ~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~-sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~l 614 (1118)
.+.+|++++|+|||||||||||++|+|+++ +. .|.|...+.+... ..+...++++|.......
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~--~~~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~~~------------- 182 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLN--NTKYHHILTIEDPIEF-VHESKKCLVNQREVHRDT------------- 182 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHH--HHCCCEEEEEESSCCS-CCCCSSSEEEEEEBTTTB-------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhccc--CCCCcEEEEccCcHHh-hhhccccceeeeeecccc-------------
Confidence 668999999999999999999999999986 34 4666543332211 122223444443221111
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 048718 615 RLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLR 694 (1118)
Q Consensus 615 r~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~ 694 (1118)
++-.+ +||++|..+|++|++|||| |..+..
T Consensus 183 ---------------------------------------~~~~~----~La~aL~~~PdvillDEp~---d~e~~~---- 212 (356)
T 3jvv_A 183 ---------------------------------------LGFSE----ALRSALREDPDIILVGEMR---DLETIR---- 212 (356)
T ss_dssp ---------------------------------------SCHHH----HHHHHTTSCCSEEEESCCC---SHHHHH----
T ss_pred ---------------------------------------CCHHH----HHHHHhhhCcCEEecCCCC---CHHHHH----
Confidence 11111 9999999999999999999 665543
Q ss_pred HHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEec
Q 048718 695 ALRREALEGVNICTVVHQPSYALFRMFDDLILLAK 729 (1118)
Q Consensus 695 ~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~ 729 (1118)
.+.+++..|.+|++++|+.+.. ..+|+++.|..
T Consensus 213 ~~~~~~~~G~~vl~t~H~~~~~--~~~dRli~l~~ 245 (356)
T 3jvv_A 213 LALTAAETGHLVFGTLHTTSAA--KTIDRVVDVFP 245 (356)
T ss_dssp HHHHHHHTTCEEEEEESCSSHH--HHHHHHHHTSC
T ss_pred HHHHHHhcCCEEEEEEccChHH--HHHHHHhhhcC
Confidence 4444566799999999998853 77899888743
No 114
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.46 E-value=1e-15 Score=178.08 Aligned_cols=185 Identities=12% Similarity=0.088 Sum_probs=116.8
Q ss_pred EEEeEEEEEcCCcceeeeeeEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEE
Q 048718 514 AFKDLTITLKGKNKHLMRSVTGKLSPGRV--SAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGF 591 (1118)
Q Consensus 514 ~~knLs~~~~~~~k~IL~nVSl~I~~GEi--~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 591 (1118)
++++ ++.|. +.+ |++||++|++|++ ++|+||||||||||||+|+|+.- .|.... . ......++.++|
T Consensus 18 ~~~~-~~~y~--~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~~~-~--~~~~~~~~~i~~ 86 (427)
T 2qag_B 18 PLAG-HVGFD--SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEPAT-H--TQPGVQLQSNTY 86 (427)
T ss_dssp CCCC-CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC--------------CCSSCEEEEEEE
T ss_pred EEee-EEEEC--Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCcCC-C--CCccceEeeEEE
Confidence 3444 55663 345 9999999999999 99999999999999999999852 121110 0 011123457999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhccCCCCC--HHHHHHHHHHHHHHc-CCCc----cccccccC------ccCCCCCHHH
Q 048718 592 VPQDDIVHGNLTVEENLWFSARCRLSADLP--KAEKVLVVERVIESL-GLQH----IRDSLVGT------VEKRGISGGQ 658 (1118)
Q Consensus 592 V~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~--~~~~~~~v~~lL~~l-gL~~----~~dt~vg~------~~~rgLSGGE 658 (1118)
++|++.+++.+||.||+.|+.......... ........+++|+.. ++.. ..|+.|.. ...++|+-.+
T Consensus 87 v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D 166 (427)
T 2qag_B 87 DLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD 166 (427)
T ss_dssp EEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH
T ss_pred EeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH
Confidence 999998888899999987753211000000 011223455566654 5432 22332110 1123577666
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHHCCCEEEEEEcC
Q 048718 659 RKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRR-EALEGVNICTVVHQ 712 (1118)
Q Consensus 659 RQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~-la~~G~TIIvvtHq 712 (1118)
+.|+++|..+++|+++||||..|.+.....+.+.+++ +...|..|+.++.+
T Consensus 167 ---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 167 ---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp ---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred ---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 7999999999999999999999999999999999986 66679999888765
No 115
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.45 E-value=2.1e-15 Score=161.06 Aligned_cols=148 Identities=16% Similarity=0.133 Sum_probs=99.4
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCH----HHHHHH
Q 048718 535 GKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTV----EENLWF 610 (1118)
Q Consensus 535 l~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV----~EnL~f 610 (1118)
-..++|++++|+||||||||||+++|+|+.++....|.|.+.+.+... ..++.++|+||++..|+.+++ .|++.+
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 356899999999999999999999999998621268999998865432 234568999998766554444 222211
Q ss_pred HHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048718 611 SARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQ 690 (1118)
Q Consensus 611 ~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~ 690 (1118)
... . .|.| +++ ++.++..++++||| ||+.++.
T Consensus 90 ~~~-------------------------------~------yg~~---~~~---v~~~l~~G~illLD-----LD~~~~~ 121 (219)
T 1s96_A 90 FGN-------------------------------Y------YGTS---REA---IEQVLATGVDVFLD-----IDWQGAQ 121 (219)
T ss_dssp TTE-------------------------------E------EEEE---HHH---HHHHHTTTCEEEEE-----CCHHHHH
T ss_pred Hhc-------------------------------c------CCCC---HHH---HHHHHhcCCeEEEE-----ECHHHHH
Confidence 100 0 0111 121 34455568999999 9999999
Q ss_pred HHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecCcEEEEecChhhHHHHH
Q 048718 691 LLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKGGVIVYHGPVKKVEEYF 746 (1118)
Q Consensus 691 ~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~GG~iv~~G~~~~l~~yf 746 (1118)
.+.+.+. ++.||++++|+++... + ++ +.+ | .++++++..-+
T Consensus 122 ~i~~~l~----~~~tI~i~th~~~~l~-~---Rl--~~r-G----~~~~e~i~~rl 162 (219)
T 1s96_A 122 QIRQKMP----HARSIFILPPSKIELD-R---RL--RGR-G----QDSEEVIAKRM 162 (219)
T ss_dssp HHHHHCT----TCEEEEEECSSHHHHH-H---HH--HTT-S----CSCHHHHHHHH
T ss_pred HHHHHcc----CCEEEEEECCCHHHHH-H---HH--HHc-C----CCCHHHHHHHH
Confidence 9998775 5899999999987532 2 32 433 4 57777776544
No 116
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.45 E-value=2.7e-13 Score=141.35 Aligned_cols=154 Identities=19% Similarity=0.172 Sum_probs=98.4
Q ss_pred eeeeeeE-EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHH
Q 048718 528 HLMRSVT-GKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEE 606 (1118)
Q Consensus 528 ~IL~nVS-l~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~E 606 (1118)
+.|+.+. +-+++|++++|+||||||||||++.|++ . ...+.+ |+..+.. .+..
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~--~~~~v~-----------------~i~~~~~----~~~~- 60 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L--SGKKVA-----------------YVDTEGG----FSPE- 60 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H--HCSEEE-----------------EEESSCC----CCHH-
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H--cCCcEE-----------------EEECCCC----CCHH-
Confidence 3455555 3689999999999999999999999999 2 112223 3322221 1111
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH--HHHHHHHHHHhhC-CCEEEEeCCCCC
Q 048718 607 NLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQ--RKRVNVGLEMVME-PSLLILDEPTSG 683 (1118)
Q Consensus 607 nL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGE--RQRVsIArALl~~-P~lLlLDEPTsG 683 (1118)
.+.-... . ..... +++++.+ .+. .+|+++ ++++..+++++.+ |+++++||||+.
T Consensus 61 ~~~~~~~-~--~~~~~-------~~~~~~~--------~~~-----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 61 RLVQMAE-T--RGLNP-------EEALSRF--------ILF-----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHH-T--TTCCH-------HHHHHHE--------EEE-----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHH-h--cCCCh-------HHHhhcE--------EEE-----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 1111000 0 01111 1222222 111 145553 6788889999986 999999999999
Q ss_pred CCHHH--------HHHHHHHHHHHHHC-CCEEEEEEcCCcH------------HHHhccCcEEEEecC
Q 048718 684 LDSSS--------SQLLLRALRREALE-GVNICTVVHQPSY------------ALFRMFDDLILLAKG 730 (1118)
Q Consensus 684 LD~~s--------a~~i~~~Lr~la~~-G~TIIvvtHq~~~------------~i~~~~D~vivL~~G 730 (1118)
||+.. ..++++.|+.++++ |.|||+++|.... .+...+|.+++|.+.
T Consensus 118 l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 118 YRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 99743 34566668888754 8999999998652 356789999999754
No 117
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.44 E-value=4e-16 Score=160.08 Aligned_cols=139 Identities=14% Similarity=0.006 Sum_probs=90.9
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChh-hhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhc
Q 048718 537 LSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQ-SYKRIIGFVPQDDIVHGNLTVEENLWFSARCR 615 (1118)
Q Consensus 537 I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~-~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr 615 (1118)
+++|++++|+||||||||||+++|+|+. ..|.|.++|.+.... ..++.++|++|+.. +.+||.|++.+.+...
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~----~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLP----GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRY 79 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCS----SSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhcc----CCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHH
Confidence 6799999999999999999999999983 479999998653211 12334678887654 4578999987754321
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCCccc--cccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 048718 616 LSADLPKAEKVLVVERVIESLGLQHIR--DSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLL 693 (1118)
Q Consensus 616 ~~~~~~~~~~~~~v~~lL~~lgL~~~~--dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~ 693 (1118)
...+.. ..++.++..+++.... +..+ ..+|+|++||+.++|++.++|+++ +|+.....+.
T Consensus 80 ~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~-----~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~ 141 (191)
T 1zp6_A 80 AKEGYF-----VILDGVVRPDWLPAFTALARPL-----HYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLH 141 (191)
T ss_dssp HHTSCE-----EEECSCCCTTTTHHHHTTCSCE-----EEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHH
T ss_pred hccCCe-----EEEeccCcHHHHHHHHhcCCCe-----EEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHH
Confidence 100000 0011111111221111 1222 249999999999999999999876 6887777776
Q ss_pred HHHHHH
Q 048718 694 RALRRE 699 (1118)
Q Consensus 694 ~~Lr~l 699 (1118)
+.++.+
T Consensus 142 ~~~~~l 147 (191)
T 1zp6_A 142 SQFADL 147 (191)
T ss_dssp HHTTCC
T ss_pred HHHhcc
Confidence 666544
No 118
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.44 E-value=2.9e-15 Score=171.14 Aligned_cols=136 Identities=18% Similarity=0.166 Sum_probs=100.0
Q ss_pred eeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEec-ChhhhcCeEEEEc-CCCCCCCCCCHHHH
Q 048718 530 MRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVA-SIQSYKRIIGFVP-QDDIVHGNLTVEEN 607 (1118)
Q Consensus 530 L~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~-~~~~~r~~IgyV~-Qd~~l~~~LTV~En 607 (1118)
++++++.|++|++++|+||||||||||+++|+|+++ +.+|.|+++|... .....++.++|++ |++.+
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~--~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~--------- 233 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP--FDQRLITIEDVPELFLPDHPNHVHLFYPSEAKE--------- 233 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC--TTSCEEEEESSSCCCCTTCSSEEEEECC--------------
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC--CCceEEEECCccccCccccCCEEEEeecCcccc---------
Confidence 499999999999999999999999999999999998 5899999998431 2223567899998 65431
Q ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048718 608 LWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSS 687 (1118)
Q Consensus 608 L~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~ 687 (1118)
+++++..+|..|+.+|..+|+.+++||++.
T Consensus 234 ---------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~----- 263 (361)
T 2gza_A 234 ---------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG----- 263 (361)
T ss_dssp --------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-----
T ss_pred ---------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH-----
Confidence 012223466777778888999999999985
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEecC
Q 048718 688 SSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLAKG 730 (1118)
Q Consensus 688 sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~~G 730 (1118)
.++.+.|+.+.....|++.++|..+. ...+||++.+..+
T Consensus 264 --~~~~~~l~~l~~g~~~~l~t~H~~~~--~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 264 --GEAYDFINVAASGHGGSITSCHAGSC--ELTFERLALMVLQ 302 (361)
T ss_dssp --THHHHHHHHHHTTCCSCEEEEECSSH--HHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHhcCCCeEEEEECCCCH--HHHHHHHHHHHhc
Confidence 24555666665444578999999763 4678888887654
No 119
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.43 E-value=8.3e-13 Score=136.39 Aligned_cols=89 Identities=13% Similarity=0.269 Sum_probs=70.9
Q ss_pred CCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEE
Q 048718 652 RGISGGQRKRVNVGLEMVM----EPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILL 727 (1118)
Q Consensus 652 rgLSGGERQRVsIArALl~----~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL 727 (1118)
..||||||||++||++|+. +|+++||||||+|||+.+...+.+.|+++.. +.++|+++|+.. +...+|+++.+
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~~--~~~~ad~i~~v 139 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRDV--MMANADKIIGV 139 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCHH--HHTTCSEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecHH--HHHhCCEEEEE
Confidence 4599999999999999974 4699999999999999999999999998764 468999999954 46899999866
Q ss_pred e-cCc-EEEEecChhhHH
Q 048718 728 A-KGG-VIVYHGPVKKVE 743 (1118)
Q Consensus 728 ~-~GG-~iv~~G~~~~l~ 743 (1118)
. ++| .-+.....++..
T Consensus 140 ~~~~g~s~~~~~~~~~~~ 157 (173)
T 3kta_B 140 SMRDGVSKVVSLSLEKAM 157 (173)
T ss_dssp EEETTEEEEEECCHHHHH
T ss_pred EecCCEEEEEEEEcHHHH
Confidence 4 234 234445555443
No 120
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.41 E-value=2.4e-16 Score=169.50 Aligned_cols=147 Identities=17% Similarity=0.215 Sum_probs=101.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHH---cCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhh-
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALK---GRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARC- 614 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLa---Gl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~l- 614 (1118)
++++++|+||||||||||+++|+ |+.. ++.|+|.++|.+.. ......+.+++|+..+++.+++.+++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAS-TEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTT-CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcC-ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999999999 9886 57888888764321 12233456677888888888999999875421
Q ss_pred -----ccCCCCCHHHHHHHHHHHHH--HcC------------CCccccccccCccCCCCCHHHHHHHHHHHHH-hhCCCE
Q 048718 615 -----RLSADLPKAEKVLVVERVIE--SLG------------LQHIRDSLVGTVEKRGISGGQRKRVNVGLEM-VMEPSL 674 (1118)
Q Consensus 615 -----r~~~~~~~~~~~~~v~~lL~--~lg------------L~~~~dt~vg~~~~rgLSGGERQRVsIArAL-l~~P~l 674 (1118)
... +.+... ..++.+.+ .++ +....++.++. ||| || ++| +.+|++
T Consensus 103 ~~~~~il~-g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~-----lSg----rv---~al~~~~P~~ 167 (246)
T 2bbw_A 103 RGQHWLLD-GFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHP-----PSG----RV---YNLDFNPPHV 167 (246)
T ss_dssp TTSCEEEE-SCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEET-----TTT----EE---EETTTSCCSS
T ss_pred CCCeEEEE-CCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcC-----CCC----Cc---cccccCCCcc
Confidence 011 111111 11222221 122 22223444443 998 66 777 999999
Q ss_pred EEEe----CCCCCCCHHHHHHHHHHHHHHHHCC
Q 048718 675 LILD----EPTSGLDSSSSQLLLRALRREALEG 703 (1118)
Q Consensus 675 LlLD----EPTsGLD~~sa~~i~~~Lr~la~~G 703 (1118)
++|| |||++||..+...+.+.|+.+.+++
T Consensus 168 lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 168 HGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp TTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred cccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 9999 9999999999999999998887554
No 121
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.40 E-value=1.9e-17 Score=170.27 Aligned_cols=172 Identities=13% Similarity=0.158 Sum_probs=110.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCC
Q 048718 540 GRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSAD 619 (1118)
Q Consensus 540 GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~ 619 (1118)
|++++|+||||||||||+++|++ +..|.|.++|.+... ...+++++|.....+.+|+++++.+.+.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~-----~~~g~~~i~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA-----QLDNSAYIEGDIINH---MVVGGYRPPWESDELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH-----HSSSEEEEEHHHHHT---TCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhc-----ccCCeEEEcccchhh---hhccccccCccchhHHHHHHHHHHHHHHHHHhcC
Confidence 78999999999999999999998 246889998854321 1235677776644455688888877543221000
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCccCCCC--CHHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHHHH
Q 048718 620 LPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGI--SGGQRKRVNVGL------EMVMEPSLLILDEPTSGLDSSSSQL 691 (1118)
Q Consensus 620 ~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgL--SGGERQRVsIAr------ALl~~P~lLlLDEPTsGLD~~sa~~ 691 (1118)
. ..+++.+. ....... .+.+ |+|++|++.++. +|+.+|+...+|+ +||+.....
T Consensus 74 ~---------~~ild~~~-~~~~~~~-----~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~ 135 (189)
T 2bdt_A 74 N---------DVVLDYIA-FPDEAEA-----LAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL 135 (189)
T ss_dssp C---------EEEEESCC-CHHHHHH-----HHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH
T ss_pred C---------cEEEeecc-CHHHHHH-----HHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH
Confidence 0 00011000 0000000 1124 888888888888 8999999888884 899988887
Q ss_pred HHHHHHHHHHCCCEEEEEEcC-CcHHHHhccCcEEEEecCcEEEEecChhhH
Q 048718 692 LLRALRREALEGVNICTVVHQ-PSYALFRMFDDLILLAKGGVIVYHGPVKKV 742 (1118)
Q Consensus 692 i~~~Lr~la~~G~TIIvvtHq-~~~~i~~~~D~vivL~~GG~iv~~G~~~~l 742 (1118)
.+.++.+...+.++|.++|. ++. +.+.+|+++ +.|+++..|+++-+
T Consensus 136 -~~~~~~~~~~~~~ii~tsh~~~~~-~e~~~~~i~---~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 136 -VEEFESKGIDERYFYNTSHLQPTN-LNDIVKNLK---TNPRFIFCMAGDPL 182 (189)
T ss_dssp -HHHHHHTTCCTTSEEECSSSCGGG-HHHHHHHHH---HCGGGSCC------
T ss_pred -HHHHhhcCCCccEEEeCCCCChhh-HHHHHHHHh---hCCcEEEeecCCch
Confidence 78787775567899999998 654 457899988 55789999988654
No 122
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.39 E-value=1.2e-16 Score=179.32 Aligned_cols=156 Identities=16% Similarity=0.120 Sum_probs=104.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCC------CCceeEEEECCEecChh------------------hhcCeEEEE---c
Q 048718 541 RVSAVMGPSGAGKTTFLSALKGRVPG------CIMSGTILVNGKVASIQ------------------SYKRIIGFV---P 593 (1118)
Q Consensus 541 Ei~aIlGpnGSGKSTLLkiLaGl~~~------~~~sG~I~inG~~~~~~------------------~~r~~IgyV---~ 593 (1118)
++++|+|+||||||||||.|.|+.++ .++.|+|.++|.++... .+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 68999999999999999999998621 15789999999875321 234457777 6
Q ss_pred CCCCCCCCCCHHHHHHHHHhhccCCC---CCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 048718 594 QDDIVHGNLTVEENLWFSARCRLSAD---LPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM 670 (1118)
Q Consensus 594 Qd~~l~~~LTV~EnL~f~a~lr~~~~---~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~ 670 (1118)
|+..+++.++|.||+.++........ .+.......++.++..+++.+..+... .+|+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEEE
Confidence 77666667788887754311000000 000001111222333445554444433 389999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCc
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPS 714 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~ 714 (1118)
+|+++ ||| .++.+.|+++. .+.+|++++|++.
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 99987 998 67777887764 5899999999854
No 123
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.38 E-value=3.4e-16 Score=178.47 Aligned_cols=162 Identities=15% Similarity=0.109 Sum_probs=99.4
Q ss_pred eeeeeEEEEeC--CeEEEEECCCCCcHHHHHHHHHcCCCCCCce----eEEEEC----CEec--ChhhhcCeEEEEcCCC
Q 048718 529 LMRSVTGKLSP--GRVSAVMGPSGAGKTTFLSALKGRVPGCIMS----GTILVN----GKVA--SIQSYKRIIGFVPQDD 596 (1118)
Q Consensus 529 IL~nVSl~I~~--GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~s----G~I~in----G~~~--~~~~~r~~IgyV~Qd~ 596 (1118)
+.+.|++.|.+ |+.++|+||||||||||+++|+|+++ +.+ |+|.++ |.+. ....+ +.|+|++|+.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~--~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~ 233 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN--TTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRY 233 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT--CEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC--CCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHH
Confidence 45678999999 99999999999999999999999997 567 666553 2111 00111 1133333321
Q ss_pred CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh-hCCCEE
Q 048718 597 IVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMV-MEPSLL 675 (1118)
Q Consensus 597 ~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl-~~P~lL 675 (1118)
.++ ..|+.|||.+. ..+..++.+ ..+|+|++||..+++++. .+|+++
T Consensus 234 ~~~-~~t~~~nl~~~--------------------------~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~ll 281 (365)
T 1lw7_A 234 IDY-AVRHSHKIAFI--------------------------DTDFITTQA-----FCIQYEGKAHPFLDSMIKEYPFDVT 281 (365)
T ss_dssp HHH-HHHHCSSEEEE--------------------------SSCHHHHHH-----HHHHHHSCCCHHHHHHHHHSCCSEE
T ss_pred HHH-HHhccCCEEEE--------------------------eCCchHHHH-----HHHHHcCCCCHHHHHHHhhcCCCEE
Confidence 111 01222221110 011111111 126677788888888775 699999
Q ss_pred EEeC---CC------CCCCHHHHHHHHHHHHHHHH-CCCEEEEEEcCCcHHHHhccCcEEEE
Q 048718 676 ILDE---PT------SGLDSSSSQLLLRALRREAL-EGVNICTVVHQPSYALFRMFDDLILL 727 (1118)
Q Consensus 676 lLDE---PT------sGLD~~sa~~i~~~Lr~la~-~G~TIIvvtHq~~~~i~~~~D~vivL 727 (1118)
+||| |+ .+||+..+..+.+.|+++.+ .|.+|++++|. .. ..++++.+.+|
T Consensus 282 lLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~-~~r~~~~i~~i 341 (365)
T 1lw7_A 282 ILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SY-LDRYNQVKAVI 341 (365)
T ss_dssp EEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SH-HHHHHHHHHHH
T ss_pred EECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CH-HHHHHHHHHHH
Confidence 9999 65 58999999999999988764 48899999875 32 23455554444
No 124
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.36 E-value=2.9e-13 Score=154.43 Aligned_cols=141 Identities=21% Similarity=0.176 Sum_probs=99.0
Q ss_pred eeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEEC-CEecChhhhcCeEEEEcCCCCCCCCCCHHH
Q 048718 528 HLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVN-GKVASIQSYKRIIGFVPQDDIVHGNLTVEE 606 (1118)
Q Consensus 528 ~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~in-G~~~~~~~~r~~IgyV~Qd~~l~~~LTV~E 606 (1118)
.-|+++++. .+|++++|+||||||||||+|+|+|+... +.+|+|.++ |.... ...+..+++++|+..+++++||+|
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE-ILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC-CCCC--------------CCCEEEECTTSCEEEECHHHHT
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc-cccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHH
Confidence 345666654 48999999999999999999999999861 368999987 75542 234567999999999998889988
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048718 607 NLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDS 686 (1118)
Q Consensus 607 nL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~ 686 (1118)
+ . + ..+...+....+.++++.+|+.+..+..+.+ +| ||+||++||+++ +++
T Consensus 281 ~---~--l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~-----lS-G~~~r~ala~gl---------------i~~ 331 (358)
T 2rcn_A 281 F---G--L---WHLEPEQITQGFVEFHDYLGHCKYRDCKHDA-----DP-GCAIREAVENGA---------------IAE 331 (358)
T ss_dssp C---C--C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCSSS-----CT-TCHHHHHHHHTS---------------SCH
T ss_pred h---h--h---cCCCHHHHHHHHHHHHHHcCCchhcCCCccc-----CC-HHHHHHHHHhcC---------------CCH
Confidence 4 1 1 1345555566788899999999888888765 99 999999999864 344
Q ss_pred HHHHHHHHHHHHHH
Q 048718 687 SSSQLLLRALRREA 700 (1118)
Q Consensus 687 ~sa~~i~~~Lr~la 700 (1118)
.-...+.++++++.
T Consensus 332 ~R~~~y~~l~~e~~ 345 (358)
T 2rcn_A 332 TRFENYHRILESMA 345 (358)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555543
No 125
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.36 E-value=2.3e-14 Score=168.97 Aligned_cols=154 Identities=13% Similarity=0.125 Sum_probs=106.1
Q ss_pred eeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-------hh--hcCeEEEEcCCCCCCC
Q 048718 530 MRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-------QS--YKRIIGFVPQDDIVHG 600 (1118)
Q Consensus 530 L~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-------~~--~r~~IgyV~Qd~~l~~ 600 (1118)
-+++||++++|++++|+|+||||||||++.|+|++. +..|+|.++|.+... .. .++.|+|++|+..+++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh--hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 468999999999999999999999999999999987 568999998765421 11 2567999999988888
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh-hCCC-EEEEe
Q 048718 601 NLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMV-MEPS-LLILD 678 (1118)
Q Consensus 601 ~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl-~~P~-lLlLD 678 (1118)
.+||++||.++..... + -.+++..|+.+.... +-.-.+|++.+++++. ..|. +||..
T Consensus 361 ~~tV~e~l~~a~~~~~--D----------vVLIDTaGrl~~~~~---------lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 361 ASVIFDAIQAAKARNI--D----------VLIADTAGRLQNKSH---------LMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHHTTC--S----------EEEECCCCSCCCHHH---------HHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHhcCC--C----------EEEEeCCCccchhhh---------HHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 8999999998753210 0 001222333222111 1122357888888764 4563 55555
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEcC
Q 048718 679 EPTSGLDSSSSQLLLRALRREAL-EGVNICTVVHQ 712 (1118)
Q Consensus 679 EPTsGLD~~sa~~i~~~Lr~la~-~G~TIIvvtHq 712 (1118)
++|+|.|.. +.++.+.. -|.|.|++||-
T Consensus 420 DattGq~al------~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 420 DASTGQNAV------SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp EGGGTHHHH------HHHHHHHHHTCCSEEEEECG
T ss_pred cCcccHHHH------HHHHHHHhhcCCCEEEEEcC
Confidence 588886554 23444443 48899999993
No 126
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.36 E-value=8.3e-14 Score=159.85 Aligned_cols=130 Identities=17% Similarity=0.252 Sum_probs=96.9
Q ss_pred eeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc-eeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHH
Q 048718 528 HLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIM-SGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEE 606 (1118)
Q Consensus 528 ~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~-sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~E 606 (1118)
.+|++++ +++|++++|+|||||||||||++|+|+++ +. +|.|.+.|.+... .++..++||+|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~~~e~-~~~~~~~~v~Q~~---------- 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEY-VFKHKKSIVNQRE---------- 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEESSCCS-CCCCSSSEEEEEE----------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecccHhh-hhccCceEEEeee----------
Confidence 3677766 78999999999999999999999999987 45 7999877655432 3456678888841
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048718 607 NLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDS 686 (1118)
Q Consensus 607 nL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~ 686 (1118)
+|+. + ..+ +.+|+++|..+|++|++|||| |+
T Consensus 191 -----------------------------~g~~------~-----~~~------~~~l~~~L~~~pd~illdE~~---d~ 221 (372)
T 2ewv_A 191 -----------------------------VGED------T-----KSF------ADALRAALREDPDVIFVGEMR---DL 221 (372)
T ss_dssp -----------------------------BTTT------B-----SCS------HHHHHHHTTSCCSEEEESCCC---SH
T ss_pred -----------------------------cCCC------H-----HHH------HHHHHHHhhhCcCEEEECCCC---CH
Confidence 2221 0 124 469999999999999999999 77
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEE
Q 048718 687 SSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILL 727 (1118)
Q Consensus 687 ~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL 727 (1118)
.+... +++. +..|.+++.++|+.+ +.+.+|+++.|
T Consensus 222 e~~~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l 256 (372)
T 2ewv_A 222 ETVET---ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDI 256 (372)
T ss_dssp HHHHH---HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHT
T ss_pred HHHHH---HHHH-HhcCCEEEEEECcch--HHHHHHHHHHh
Confidence 66443 3433 356899999999966 34677777655
No 127
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.35 E-value=7.7e-15 Score=151.19 Aligned_cols=136 Identities=16% Similarity=0.195 Sum_probs=89.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCc---eeEEEECCEec-C-----hhhhc-CeEE----EEcCCCCCCCCCCHHH
Q 048718 541 RVSAVMGPSGAGKTTFLSALKGRVPGCIM---SGTILVNGKVA-S-----IQSYK-RIIG----FVPQDDIVHGNLTVEE 606 (1118)
Q Consensus 541 Ei~aIlGpnGSGKSTLLkiLaGl~~~~~~---sG~I~inG~~~-~-----~~~~r-~~Ig----yV~Qd~~l~~~LTV~E 606 (1118)
++++|+|+||||||||+++|+|+++ +. .|.|.++|.++ + ...+| +.+| +++|+..+| +.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~--~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~ 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR--ERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH--HTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh--hcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec
Confidence 5899999999999999999999987 34 79999999763 1 22444 3566 889987765 110
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHH-cCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEE-------EEe
Q 048718 607 NLWFSARCRLSADLPKAEKVLVVERVIES-LGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLL-------ILD 678 (1118)
Q Consensus 607 nL~f~a~lr~~~~~~~~~~~~~v~~lL~~-lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lL-------lLD 678 (1118)
. .. +....++++++. +. ..|+.+++ +||||||||++||||++.+|++. +-|
T Consensus 77 ----------~---~~-~~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~ 135 (171)
T 2f1r_A 77 ----------V---SE-EEGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCD 135 (171)
T ss_dssp ----------C---CH-HHHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECS
T ss_pred ----------C---Ch-hhhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEec
Confidence 0 01 111235566665 53 46888876 59999999999999999999873 224
Q ss_pred CCCCC---CCHHHHHHHHHHHHHHHHCC
Q 048718 679 EPTSG---LDSSSSQLLLRALRREALEG 703 (1118)
Q Consensus 679 EPTsG---LD~~sa~~i~~~Lr~la~~G 703 (1118)
.|..+ +|......+.+.|.+...+|
T Consensus 136 ~~~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 136 ERVDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp SCCSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred CCcccCcccCcccHHHHHHHHHHHHhcc
Confidence 44322 34445567777776666565
No 128
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.31 E-value=2.1e-13 Score=154.18 Aligned_cols=143 Identities=10% Similarity=0.092 Sum_probs=100.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-------hhhcC--eEEEEcCCCCCCCCCCHHHHH
Q 048718 538 SPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-------QSYKR--IIGFVPQDDIVHGNLTVEENL 608 (1118)
Q Consensus 538 ~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-------~~~r~--~IgyV~Qd~~l~~~LTV~EnL 608 (1118)
++|++++|+||||||||||++.|+|+++ +..|+|.+.|.+... ..+++ .+.|++|+..+.|.+||+||+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 6899999999999999999999999987 578999999987532 11222 366999999999999999999
Q ss_pred HHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048718 609 WFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSS 688 (1118)
Q Consensus 609 ~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~s 688 (1118)
.++..... +. .+++..|+.+..+..+ ++.-.|++++..++.+++||.+|.
T Consensus 205 ~~~~~~~~--d~----------vliDtaG~~~~~~~l~------------~eL~~i~ral~~de~llvLDa~t~------ 254 (328)
T 3e70_C 205 QHAKARGI--DV----------VLIDTAGRSETNRNLM------------DEMKKIARVTKPNLVIFVGDALAG------ 254 (328)
T ss_dssp HHHHHHTC--SE----------EEEEECCSCCTTTCHH------------HHHHHHHHHHCCSEEEEEEEGGGT------
T ss_pred HHHHhccc--hh----------hHHhhccchhHHHHHH------------HHHHHHHHHhcCCCCEEEEecHHH------
Confidence 88643110 00 0122234333222222 222348899998888888885553
Q ss_pred HHHHHHHHHHHH-HCCCEEEEEEcCC
Q 048718 689 SQLLLRALRREA-LEGVNICTVVHQP 713 (1118)
Q Consensus 689 a~~i~~~Lr~la-~~G~TIIvvtHq~ 713 (1118)
+++++.++.+. ..+.|+|++||..
T Consensus 255 -~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 255 -NAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp -THHHHHHHHHHHHSCCCEEEEECGG
T ss_pred -HHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 35555666666 3589999999963
No 129
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.30 E-value=1.2e-14 Score=147.93 Aligned_cols=85 Identities=18% Similarity=0.097 Sum_probs=68.5
Q ss_pred EEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCC
Q 048718 518 LTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDI 597 (1118)
Q Consensus 518 Ls~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~ 597 (1118)
+++.| +++.+++++||+|++|++++|+||||||||||+|+|+|++ + .+|+|.++|.++......+ .|++|+..
T Consensus 13 ~~~~~--g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~~~~~--~~~~q~~~ 85 (158)
T 1htw_A 13 SMLRF--GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEEYNIA--GKMIYHFD 85 (158)
T ss_dssp HHHHH--HHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEEEEET--TEEEEEEE
T ss_pred HHHHH--HHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeeeccCC--Ccceeccc
Confidence 44444 3457899999999999999999999999999999999998 3 6899999997653111112 27999988
Q ss_pred CCCCCCHHHHHHH
Q 048718 598 VHGNLTVEENLWF 610 (1118)
Q Consensus 598 l~~~LTV~EnL~f 610 (1118)
++ .+||.||+.+
T Consensus 86 l~-~ltv~e~l~~ 97 (158)
T 1htw_A 86 LY-RLADPEELEF 97 (158)
T ss_dssp CT-TCSCTTHHHH
T ss_pred cc-cCCcHHHHHH
Confidence 88 8999999965
No 130
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.30 E-value=2.4e-12 Score=136.24 Aligned_cols=151 Identities=21% Similarity=0.261 Sum_probs=83.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc--CCCC---CCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHHHHH
Q 048718 535 GKLSPGRVSAVMGPSGAGKTTFLSALKG--RVPG---CIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLW 609 (1118)
Q Consensus 535 l~I~~GEi~aIlGpnGSGKSTLLkiLaG--l~~~---~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~ 609 (1118)
+-|++|++++|+||||||||||++.|++ ..++ ....|.+++++... + ...+-..
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~-----------------~----~~~~~~~ 77 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT-----------------F----RPERLLA 77 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC-----------------C----CHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC-----------------c----CHHHHHH
Confidence 4578999999999999999999999999 4431 01356666665431 0 1111000
Q ss_pred HHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH-HHHHHHHh--hCCCEEEEeCCCCCCCH
Q 048718 610 FSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKR-VNVGLEMV--MEPSLLILDEPTSGLDS 686 (1118)
Q Consensus 610 f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQR-VsIArALl--~~P~lLlLDEPTsGLD~ 686 (1118)
..... .... +++++.+. .. +..++.+... +.-+.+++ .+|+++++|||++.+|+
T Consensus 78 ~~~~~----g~~~-------~~~~~~~~-------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 78 VAERY----GLSG-------SDVLDNVA-------YA-----RAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHT----TCCH-------HHHHHTEE-------EE-----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHc----CCCH-------HHHhhCeE-------EE-----ecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 10000 0111 11122110 00 1244444332 33333444 58999999999999998
Q ss_pred H-------H-----HHHHHHHHHHHHHC-CCEEEEEEcCCcHH------------------HHhccCcEEEEec
Q 048718 687 S-------S-----SQLLLRALRREALE-GVNICTVVHQPSYA------------------LFRMFDDLILLAK 729 (1118)
Q Consensus 687 ~-------s-----a~~i~~~Lr~la~~-G~TIIvvtHq~~~~------------------i~~~~D~vivL~~ 729 (1118)
. . ..++++.|+.++++ |.|||+++|..... +...+|.+++|.+
T Consensus 135 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~ 208 (243)
T 1n0w_A 135 DYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 208 (243)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEE
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEE
Confidence 5 3 34566667777654 99999999965432 2226788888865
No 131
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.29 E-value=9.4e-15 Score=165.53 Aligned_cols=171 Identities=12% Similarity=0.108 Sum_probs=112.4
Q ss_pred EeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChh-------hhcCe
Q 048718 516 KDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQ-------SYKRI 588 (1118)
Q Consensus 516 knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~-------~~r~~ 588 (1118)
+++++.|. .+.+|+++++++.+|++++|+||||||||||+++|+|++. +.+|+|.+.|.+.... ..++.
T Consensus 33 ~~~~~~~~--~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~--~~~g~v~i~~~d~~~~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 33 RRADHRAA--VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT--AAGHKVAVLAVDPSSTRTGGSILGDKTR 108 (337)
T ss_dssp SSHHHHHH--HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred CCcccccC--hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh--hCCCEEEEEEEcCcccccccchHHHhhh
Confidence 34455552 3569999999999999999999999999999999999986 5789999999875321 24567
Q ss_pred EEEEcCCCCCCCCC------------CHHHHHHHHH-----------------------------hhccCCCCCHHH--H
Q 048718 589 IGFVPQDDIVHGNL------------TVEENLWFSA-----------------------------RCRLSADLPKAE--K 625 (1118)
Q Consensus 589 IgyV~Qd~~l~~~L------------TV~EnL~f~a-----------------------------~lr~~~~~~~~~--~ 625 (1118)
++|++|++.++... ++.|.+.... .+. ........ .
T Consensus 109 i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~-d~~~~~~~~~i 187 (337)
T 2qm8_A 109 MARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLM-LPGAGDELQGI 187 (337)
T ss_dssp STTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEE-CSCC------C
T ss_pred heeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEE-cCCCcccHHHH
Confidence 99999998877532 2333321110 000 00000000 0
Q ss_pred HHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 048718 626 VLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVM------EPSLLILDEPTSGLDSSSSQLLLRALRRE 699 (1118)
Q Consensus 626 ~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~------~P~lLlLDEPTsGLD~~sa~~i~~~Lr~l 699 (1118)
...+.++...+.+ +..|.. ....+|+|++|++.++++++. +|++++ ||+||.....++++.|.++
T Consensus 188 ~~~i~~~~~ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 188 KKGIFELADMIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp CTTHHHHCSEEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHhccccEEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 0001111111222 112211 113479999999999999987 688886 9999999999999999876
Q ss_pred H
Q 048718 700 A 700 (1118)
Q Consensus 700 a 700 (1118)
.
T Consensus 259 ~ 259 (337)
T 2qm8_A 259 R 259 (337)
T ss_dssp H
T ss_pred H
Confidence 4
No 132
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.27 E-value=1.4e-11 Score=140.89 Aligned_cols=77 Identities=26% Similarity=0.367 Sum_probs=67.2
Q ss_pred CCCCHHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcE
Q 048718 652 RGISGGQRKRV------NVGLEMVME-PSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDL 724 (1118)
Q Consensus 652 rgLSGGERQRV------sIArALl~~-P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~v 724 (1118)
..|||||+||| ++|++|+.+ |++|||||||+|||+..+..+.+.|+++. .+.+||++||++. +...+|++
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~~ 355 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADVI 355 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCEE
Confidence 46999999988 567889999 99999999999999999999999998864 3568999999975 45889999
Q ss_pred EEEecCc
Q 048718 725 ILLAKGG 731 (1118)
Q Consensus 725 ivL~~GG 731 (1118)
++|.+.|
T Consensus 356 ~~l~k~~ 362 (371)
T 3auy_A 356 INVKKDG 362 (371)
T ss_dssp EEEEESS
T ss_pred EEEEecC
Confidence 9998654
No 133
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.26 E-value=3.1e-13 Score=150.16 Aligned_cols=134 Identities=15% Similarity=0.170 Sum_probs=88.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHHHHHHHHh---h
Q 048718 538 SPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSAR---C 614 (1118)
Q Consensus 538 ~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~---l 614 (1118)
+++.+++|.|++|||||||.+.|++++.+ .| . -++.+.+|+||+.+++. ++++|+.++.. +
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g-----------~-~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY-----------G-GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH-----------G-GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC-----------C-CCceEEEeccccccCCh-HHHHHHhccccccch
Confidence 36789999999999999999999998851 12 0 13456677999998865 88999988631 0
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCC--cc--ccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048718 615 RLSADLPKAEKVLVVERVIESLGLQ--HI--RDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSS 688 (1118)
Q Consensus 615 r~~~~~~~~~~~~~v~~lL~~lgL~--~~--~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~s 688 (1118)
....+.+.......+.+.++.+... .. ....+. .+.+.+||||+||+.+|++...+|+|||+||+|++||+..
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence 1111112111223455666666332 10 111111 2345799999999999833333999999999999999853
No 134
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.23 E-value=3e-13 Score=157.40 Aligned_cols=166 Identities=16% Similarity=0.134 Sum_probs=96.8
Q ss_pred eeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHHHHH
Q 048718 530 MRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLW 609 (1118)
Q Consensus 530 L~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~ 609 (1118)
-++++++++.|+.++|+|+|||||||||++|+|..+ .+.+.+.. .+...+|+|.+++. ..+++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ft--Tl~p~~G~V~~~~~--~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFT--TLSPNLGVVEVSEE--ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTC--SSCCEEEEEECSSS--CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccc--eecceeeEEEecCc--ceEEEEeccc
Confidence 489999999999999999999999999999999853 12222211 12334555555430 0111111110
Q ss_pred HHHhhccCCCCCHHHH--HHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048718 610 FSARCRLSADLPKAEK--VLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSS 687 (1118)
Q Consensus 610 f~a~lr~~~~~~~~~~--~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~ 687 (1118)
+.........+..... .++++.++..+++. +..+. .||+||+||+.+|++|+..|.||++ +.||..
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~~~~-----~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DEPLK-----TLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SCHHH-----HHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCCHH-----HHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 0000000001111110 01122333334443 23333 4999999999999999999999999 999998
Q ss_pred HHHHHHHHHHHHH-HCCCEEEEEEcCCcHHHHhc
Q 048718 688 SSQLLLRALRREA-LEGVNICTVVHQPSYALFRM 720 (1118)
Q Consensus 688 sa~~i~~~Lr~la-~~G~TIIvvtHq~~~~i~~~ 720 (1118)
.+ +.++.+++.. ..|.+++.+|......+.++
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL 315 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSALTGAGLPAL 315 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHH
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHH
Confidence 77 4555555544 45777777665433333333
No 135
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.22 E-value=5.2e-13 Score=148.99 Aligned_cols=121 Identities=17% Similarity=0.178 Sum_probs=83.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEE---CCEecChh--hhc-CeEEEEcCCCCCC-----CCCCHHH
Q 048718 538 SPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILV---NGKVASIQ--SYK-RIIGFVPQDDIVH-----GNLTVEE 606 (1118)
Q Consensus 538 ~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~i---nG~~~~~~--~~r-~~IgyV~Qd~~l~-----~~LTV~E 606 (1118)
.+|++++|+||||||||||+|+|+ +.. +.+|+|.+ +|+..... .++ +.+|||+|++.+. +++|+ |
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 469999999999999999999999 877 68999999 88765421 122 3589999998653 68999 8
Q ss_pred HH--HHH----HhhccCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHHH
Q 048718 607 NL--WFS----ARCRLSADLPKAEKVLVVERVIESLGLQH-IRDSLVGTVEKRGISGGQRKRVNVGLE 667 (1118)
Q Consensus 607 nL--~f~----a~lr~~~~~~~~~~~~~v~~lL~~lgL~~-~~dt~vg~~~~rgLSGGERQRVsIArA 667 (1118)
++ .|+ ..++........+...+++++++.++|.+ ..+.++.. |||.++|++.|||+
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~-----ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKI-----IKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHH-----TTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHH-----HHHHHHHHHHHhcc
Confidence 88 454 11111110111122345889999999986 67777765 99988999999873
No 136
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.21 E-value=8e-15 Score=170.69 Aligned_cols=145 Identities=19% Similarity=0.187 Sum_probs=100.4
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-------hhh
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-------QSY 585 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-------~~~ 585 (1118)
+.+++|++.+ ....+|+++ +. ++|++++|+|||||||||||++|+|+++ +.+|.|.+.|.++.. ..+
T Consensus 144 ~~l~~Lg~~~--~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~--~~~g~I~~~ed~ie~~~~~~~q~~v 217 (418)
T 1p9r_A 144 LDLHSLGMTA--HNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELN--SSERNILTVEDPIEFDIDGIGQTQV 217 (418)
T ss_dssp CCGGGSCCCH--HHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHC--CTTSCEEEEESSCCSCCSSSEEEEC
T ss_pred CCHHHcCCCH--HHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcC--CCCCEEEEecccchhccCCcceEEE
Confidence 3445555544 234578888 53 8999999999999999999999999987 468999998876531 123
Q ss_pred cCeEEEEc---------CCCCC--CCC----CCHHHHHHHHHhhc-----cCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 048718 586 KRIIGFVP---------QDDIV--HGN----LTVEENLWFSARCR-----LSADLPKAEKVLVVERVIESLGLQHIRDSL 645 (1118)
Q Consensus 586 r~~IgyV~---------Qd~~l--~~~----LTV~EnL~f~a~lr-----~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~ 645 (1118)
++.+++++ |++.+ ++. .|+.+++.++..-+ ....-.. ..++ .|..+|+.+.. .
T Consensus 218 ~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~----~~i~-rL~~lgl~~~~--~ 290 (418)
T 1p9r_A 218 NPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAV----GAVT-RLRDMGIEPFL--I 290 (418)
T ss_dssp BGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSH----HHHH-HHHHHTCCHHH--H
T ss_pred ccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHH----HHHH-HHHHcCCcHHH--H
Confidence 34566665 88765 344 68999998764311 1111111 1233 46678887643 3
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 048718 646 VGTVEKRGISGGQRKRVNVGLEMVMEPSLLIL 677 (1118)
Q Consensus 646 vg~~~~rgLSGGERQRVsIArALl~~P~lLlL 677 (1118)
+. .|||||+|| ||++|+.+|+++.-
T Consensus 291 ~~-----~LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 291 SS-----SLLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp HH-----HEEEEEEEE--EEEEECTTTCEEEE
T ss_pred HH-----HHHHHHHHH--hhhhhcCCCCccCC
Confidence 33 499999999 99999999998763
No 137
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.19 E-value=1.4e-11 Score=125.60 Aligned_cols=48 Identities=15% Similarity=0.116 Sum_probs=42.5
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHH
Q 048718 669 VMEPSLLILDEPTS-GLDSSSSQLLLRALRREALEGVNICTVVHQPSYA 716 (1118)
Q Consensus 669 l~~P~lLlLDEPTs-GLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~ 716 (1118)
+.+|++|+||||++ ++|+..+..+.++|.....+|+++|++||.+...
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 45999999999995 9999999999999988877899999999997643
No 138
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.15 E-value=1.9e-11 Score=122.71 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=36.8
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCE-EEEEEcCCc
Q 048718 669 VMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVN-ICTVVHQPS 714 (1118)
Q Consensus 669 l~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~T-IIvvtHq~~ 714 (1118)
+.+|++|++|||++ +|...+..+.+++..+..+|++ +|+++|.+.
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence 45799999999998 6655588899999888877888 888888643
No 139
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.14 E-value=3.6e-11 Score=134.85 Aligned_cols=136 Identities=15% Similarity=0.169 Sum_probs=75.3
Q ss_pred EEEECCCCCcHHHHHHHHHc-CCCCCCceeEEEECCEecCh-hhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCC
Q 048718 543 SAVMGPSGAGKTTFLSALKG-RVPGCIMSGTILVNGKVASI-QSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADL 620 (1118)
Q Consensus 543 ~aIlGpnGSGKSTLLkiLaG-l~~~~~~sG~I~inG~~~~~-~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~ 620 (1118)
+.|.||||+|||||+++|++ +.. +..|.|.++|.+... ...+..+++++|.+.+.-..+ + .+ ..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~--~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~-------~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG--PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D---MG-------NN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC--TTCCC------------------CCEECSSEEEECCC----------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC--CCCCeEEecceeecccccccceeeeecccceEEecHh--h---cC-------Cc
Confidence 89999999999999999999 555 578999999876432 123566889998765421111 0 00 00
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048718 621 PKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREA 700 (1118)
Q Consensus 621 ~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la 700 (1118)
... .+.+.++.+......+... .||| +..+|+|+|+|||++ ||+.+...+.+.|.+..
T Consensus 105 ~~~----~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 105 DRI----VIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp CHH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred chH----HHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 111 1233333332111111111 2676 788999999999999 99999999999887753
Q ss_pred HCCCEEEEEEcCCcH
Q 048718 701 LEGVNICTVVHQPSY 715 (1118)
Q Consensus 701 ~~G~TIIvvtHq~~~ 715 (1118)
.+.++|+++|+++.
T Consensus 163 -~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 163 -KNIRLIMVCDSMSP 176 (354)
T ss_dssp -TTEEEEEEESCSCS
T ss_pred -CCCEEEEEeCCHHH
Confidence 46899999999764
No 140
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.14 E-value=2.1e-13 Score=143.02 Aligned_cols=149 Identities=17% Similarity=0.102 Sum_probs=83.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhcc
Q 048718 537 LSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRL 616 (1118)
Q Consensus 537 I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~ 616 (1118)
.++|++++|+||||||||||+++|+|++++ . | ..+|+|++++..+.. +..+++........
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~--~-g---------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA--Q-G---------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH--T-T---------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh--c-C---------------CceEEEecCCCcCCH-HHHHHhcccccCCC
Confidence 368999999999999999999999999862 1 2 135666666554422 22222110000000
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH-HHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 048718 617 SADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVG-LEMVMEPSLLILDEPTSGLDSSSSQLLLRA 695 (1118)
Q Consensus 617 ~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIA-rALl~~P~lLlLDEPTsGLD~~sa~~i~~~ 695 (1118)
+..... ..+.+++..+...+..+..+.+ ...++|+||+||+++| ++++.++.++++|||.-
T Consensus 80 ~~~~~~----~~~~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~------------- 141 (208)
T 3c8u_A 80 PETFDF----EGFQRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW------------- 141 (208)
T ss_dssp GGGBCH----HHHHHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-------------
T ss_pred CchhhH----HHHHHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh-------------
Confidence 101111 1123333333211212222222 2235899999999998 88888888888898841
Q ss_pred HHHHHHCCCEEEEEEcCCcHHHHhccCc
Q 048718 696 LRREALEGVNICTVVHQPSYALFRMFDD 723 (1118)
Q Consensus 696 Lr~la~~G~TIIvvtHq~~~~i~~~~D~ 723 (1118)
..+...--.++++.+..+..+.+...+
T Consensus 142 -~~l~~~~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 142 -RDLTAIWDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp -GGGGGTCSEEEEECCCHHHHHHHHHHH
T ss_pred -HHHHHhcCEEEEEeCCHHHHHHHHHHH
Confidence 111112235677777766545555555
No 141
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.08 E-value=1.6e-13 Score=163.45 Aligned_cols=172 Identities=15% Similarity=0.148 Sum_probs=102.1
Q ss_pred ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEe-cChhhhcCeEEEEcCCCCCCCCCCHH
Q 048718 527 KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKV-ASIQSYKRIIGFVPQDDIVHGNLTVE 605 (1118)
Q Consensus 527 k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~-~~~~~~r~~IgyV~Qd~~l~~~LTV~ 605 (1118)
..+++++++.+++|+.++|+|||||||||||++|+|+++ +.+|.|++.|.+ .... ....++++.|........|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~--~~~giitied~~E~~~~-~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP--PDAKVVSIEDTREIKLY-HENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC--TTCCEEEEESSCCCCCC-CSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC--CCCCEEEEcCcccccCC-CCCeEEEEeecccccCCcCHH
Confidence 457899999999999999999999999999999999997 689999998854 2211 134466666554322223444
Q ss_pred HHHHHHHhhccC----CCCCHHHHHH------------------HHHHHHHHcCC-----Cc----cccccccCccCCCC
Q 048718 606 ENLWFSARCRLS----ADLPKAEKVL------------------VVERVIESLGL-----QH----IRDSLVGTVEKRGI 654 (1118)
Q Consensus 606 EnL~f~a~lr~~----~~~~~~~~~~------------------~v~~lL~~lgL-----~~----~~dt~vg~~~~rgL 654 (1118)
+.+..+++.+.. ..+...+... .+.+++++|.+ .. ..+..+. ....+
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~--~~~~~ 401 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALV--QTMWV 401 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEE--EEEEE
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEE--EEEEE
Confidence 444333221100 0111001000 12233333322 11 0110000 12347
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE--EEcCCcH
Q 048718 655 SGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICT--VVHQPSY 715 (1118)
Q Consensus 655 SGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIv--vtHq~~~ 715 (1118)
||||+||+.++. + | |+|||+.....+++.|.++...|.|+++ ++|+++.
T Consensus 402 s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~e 452 (511)
T 2oap_1 402 RGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEK 452 (511)
T ss_dssp SSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHH
T ss_pred eCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHH
Confidence 999999987651 2 7 9999998766666666555545777764 7777654
No 142
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.07 E-value=4.6e-10 Score=130.07 Aligned_cols=53 Identities=23% Similarity=0.305 Sum_probs=38.5
Q ss_pred HHHHHHHHHh--hCCCEEEEeCCCCCCCHHHH------------HHHHHHHHHHHHC-CCEEEEEEcC
Q 048718 660 KRVNVGLEMV--MEPSLLILDEPTSGLDSSSS------------QLLLRALRREALE-GVNICTVVHQ 712 (1118)
Q Consensus 660 QRVsIArALl--~~P~lLlLDEPTsGLD~~sa------------~~i~~~Lr~la~~-G~TIIvvtHq 712 (1118)
+.+..+.+++ .+|+++++||||+.+|+... .++++.|++++++ |.|||+++|.
T Consensus 260 ~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 260 RLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp HHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 3343344433 46999999999999997543 6678888888865 9999999998
No 143
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.02 E-value=1.2e-12 Score=147.47 Aligned_cols=151 Identities=21% Similarity=0.240 Sum_probs=98.8
Q ss_pred cceeeeeeEEEEeCC-------eEEEEECCCCCcHHHHHHHHHcCCCC--CCceeEEEECCEecCh--hh-hcCeEEEEc
Q 048718 526 NKHLMRSVTGKLSPG-------RVSAVMGPSGAGKTTFLSALKGRVPG--CIMSGTILVNGKVASI--QS-YKRIIGFVP 593 (1118)
Q Consensus 526 ~k~IL~nVSl~I~~G-------Ei~aIlGpnGSGKSTLLkiLaGl~~~--~~~sG~I~inG~~~~~--~~-~r~~IgyV~ 593 (1118)
.+.+++++++.+++| +.++|+||||+|||||+++|+|.+.. .+.+|.+..++.++.. .. .++.|+|+.
T Consensus 30 ~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iD 109 (334)
T 1in4_A 30 QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFID 109 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEc
Confidence 356888888888876 89999999999999999999998721 1356666665543311 11 245799999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhccCCCC--CHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 048718 594 QDDIVHGNLTVEENLWFSARCRLSADL--PKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVME 671 (1118)
Q Consensus 594 Qd~~l~~~LTV~EnL~f~a~lr~~~~~--~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~ 671 (1118)
|.+.+.+ ++.|+|........ ... ........++..++.++|.. ..+.++. ||+|+|||+.++
T Consensus 110 E~~~l~~--~~~e~L~~~~~~~~-~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~-----Ls~~l~sR~~l~------ 174 (334)
T 1in4_A 110 EIHRLNK--AVEELLYSAIEDFQ-IDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGL-----LSSPLRSRFGII------ 174 (334)
T ss_dssp TGGGCCH--HHHHHHHHHHHTSC-CCC---------------CCCEEEE-EESCGGG-----SCHHHHTTCSEE------
T ss_pred chhhcCH--HHHHHHHHHHHhcc-cceeeccCcccccccccCCCeEEEE-ecCCccc-----CCHHHHHhcCce------
Confidence 9887765 78888865443211 000 01111223455555566654 5555554 999999998655
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048718 672 PSLLILDEPTSGLDSSSSQLLLRALRREAL 701 (1118)
Q Consensus 672 P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~ 701 (1118)
.+||+.+..++.++|++.++
T Consensus 175 ----------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 ----------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp ----------EECCCCCHHHHHHHHHHHHH
T ss_pred ----------eeCCCCCHHHHHHHHHHHHH
Confidence 78888889999999988774
No 144
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.01 E-value=3.4e-11 Score=134.13 Aligned_cols=103 Identities=17% Similarity=0.241 Sum_probs=69.0
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEE---CCEecChh--hh-cCeEEEEcCCCC-------------
Q 048718 537 LSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILV---NGKVASIQ--SY-KRIIGFVPQDDI------------- 597 (1118)
Q Consensus 537 I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~i---nG~~~~~~--~~-r~~IgyV~Qd~~------------- 597 (1118)
+..|++++|+||||||||||||+|+|+.. +.+|+|.+ +|+..... .+ .+.+|||+|++.
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 34799999999999999999999999998 68999999 88765321 11 235899999974
Q ss_pred ---CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccC
Q 048718 598 ---VHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQ-HIRDSLVGT 648 (1118)
Q Consensus 598 ---l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~-~~~dt~vg~ 648 (1118)
+||++|| ||+.|+.. . .. .+...++.++|+.+||. +..+.++..
T Consensus 244 ~~~l~~~~~~-~n~~~~~~-~-~~----~e~~~~v~~~l~~~~L~~~~~~~~~~~ 291 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDC-N-HV----DEPECGVKEAVENGEIAESRYENYVKM 291 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTC-C-SS----SCSSCHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCC-c-CC----CCCCcHHHHHHHcCCCCHHHHHHHHHH
Confidence 5889999 99988632 1 11 11234588999999995 666776654
No 145
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.00 E-value=5.1e-13 Score=149.16 Aligned_cols=140 Identities=11% Similarity=0.116 Sum_probs=95.8
Q ss_pred EEEEeEEEEEcCCcceeeeeeEEEE-------------------eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEE
Q 048718 513 VAFKDLTITLKGKNKHLMRSVTGKL-------------------SPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTI 573 (1118)
Q Consensus 513 l~~knLs~~~~~~~k~IL~nVSl~I-------------------~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I 573 (1118)
|+++||++.| .++++++++.+ ++|++++|+||||||||||+++|+|++...+.+|+|
T Consensus 38 i~~~~v~~~y----~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i 113 (308)
T 1sq5_A 38 LSLEEVAEIY----LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRV 113 (308)
T ss_dssp CCHHHHHHTH----HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred cchHhHHHHH----HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeE
Confidence 4566777766 35888888887 899999999999999999999999986511368999
Q ss_pred EE---CCEecChhhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCcc
Q 048718 574 LV---NGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVE 650 (1118)
Q Consensus 574 ~i---nG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~ 650 (1118)
.+ +|..... ..++.+|++ |+..+++.+|+.+++.+...++.... .+.. ...+
T Consensus 114 ~vi~~d~~~~~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~---------------~i~~-P~~~------- 168 (308)
T 1sq5_A 114 ELITTDGFLHPN-QVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVP---------------NVTA-PVYS------- 168 (308)
T ss_dssp EEEEGGGGBCCH-HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCS---------------CEEE-CCEE-------
T ss_pred EEEecCCccCcH-HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCC---------------ceec-cccc-------
Confidence 99 8865432 234567888 88778888999999988765432110 0000 0011
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 048718 651 KRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDS 686 (1118)
Q Consensus 651 ~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~ 686 (1118)
.+. .+|+..+.+.+.+++++|+|.|....+.
T Consensus 169 ---~~~--~~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 169 ---HLI--YDVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp ---TTT--TEECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred ---ccc--cCcccccceecCCCCEEEECchhhCCCc
Confidence 111 1233222244567899999999988774
No 146
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.97 E-value=7.1e-14 Score=146.17 Aligned_cols=152 Identities=24% Similarity=0.312 Sum_probs=81.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC-----------CCceeEEEECCEec---ChhhhcCeEEEEcCCCCCCCCCC
Q 048718 538 SPGRVSAVMGPSGAGKTTFLSALKGRVPG-----------CIMSGTILVNGKVA---SIQSYKRIIGFVPQDDIVHGNLT 603 (1118)
Q Consensus 538 ~~GEi~aIlGpnGSGKSTLLkiLaGl~~~-----------~~~sG~I~inG~~~---~~~~~r~~IgyV~Qd~~l~~~LT 603 (1118)
++|++++|+||||||||||+++|+|+++. .+..|+ ++|.+. +...+++.+ .|+..++ ..+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~-~~~ 75 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIE-HAE 75 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEE-EEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEe-eee
Confidence 58999999999999999999999998641 023444 344321 222233222 2333222 223
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH----HHHHHH-HHhhCCCEEEEe
Q 048718 604 VEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRK----RVNVGL-EMVMEPSLLILD 678 (1118)
Q Consensus 604 V~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQ----RVsIAr-ALl~~P~lLlLD 678 (1118)
+.+|+ ++ .+..+ ++++++. +.....+.. + .|-++ ++ +++ +++.+|++++||
T Consensus 76 ~~~n~-~g--------~~~~~----i~~~~~~-~~~~~~~~~--------~-~g~~~~~~~~~-~~~~~~l~~p~~~ild 131 (198)
T 1lvg_A 76 FSGNL-YG--------TSKEA----VRAVQAM-NRICVLDVD--------L-QGVRSIKKTDL-CPIYIFVQPPSLDVLE 131 (198)
T ss_dssp ETTEE-EE--------EEHHH----HHHHHHT-TCEEEEECC--------H-HHHHHHTTSSC-CCEEEEEECSCHHHHH
T ss_pred ecCcc-CC--------CCHHH----HHHHHHc-CCcEEEECC--------H-HHHHHHHhcCC-CcEEEEEeCCCHHHHH
Confidence 33332 11 12222 3333332 100011100 0 11111 12 455 678888899999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEEEe
Q 048718 679 EPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLILLA 728 (1118)
Q Consensus 679 EPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~vivL~ 728 (1118)
|+|+++|..+...|.+.|.....+ +.+.|.+ ..+|.+++++
T Consensus 132 e~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd 172 (198)
T 1lvg_A 132 QRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND 172 (198)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence 999999999999999988876543 2334521 4578877663
No 147
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.95 E-value=2.1e-13 Score=149.97 Aligned_cols=141 Identities=15% Similarity=0.140 Sum_probs=96.3
Q ss_pred ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcCeEEEEcCCC-CCCCCC
Q 048718 527 KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKRIIGFVPQDD-IVHGNL 602 (1118)
Q Consensus 527 k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~IgyV~Qd~-~l~~~L 602 (1118)
..+++++++.+++| ++|+||||+|||||+++|+|... .|.|.++|.++.. ....+.+++++|.. ...|.+
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~----~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG----LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT----CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC----CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence 45888999999999 99999999999999999999876 2799999865422 12344577888864 455666
Q ss_pred CHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 048718 603 TVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTS 682 (1118)
Q Consensus 603 TV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTs 682 (1118)
++.|++.+....+ .... .+ .+.+..++.+.. |||||+||+.|++++..+|++| ||++.
T Consensus 107 ~~~Deid~~~~~r-----~~~~----~~------~~~~~~~~~l~~-----Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 107 IFFDEVDALCPRR-----SDRE----TG------ASVRVVNQLLTE-----MDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EEEETCTTTCC------------------------CTTHHHHHHHH-----HHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred Eeeehhhhhhccc-----CCCc----ch------HHHHHHHHHHHh-----hhcccccCCEEEEeecCChhhC--CHhhc
Confidence 7777765432111 0000 00 122333444443 9999999999999999999985 98864
Q ss_pred ------------CCCHHHHHHHHHH
Q 048718 683 ------------GLDSSSSQLLLRA 695 (1118)
Q Consensus 683 ------------GLD~~sa~~i~~~ 695 (1118)
-.|...+.+|++.
T Consensus 165 r~gRfd~~i~~~~P~~~~r~~il~~ 189 (274)
T 2x8a_A 165 RPGRLDKTLFVGLPPPADRLAILKT 189 (274)
T ss_dssp STTSSCEEEECCSCCHHHHHHHHHH
T ss_pred CcccCCeEEEeCCcCHHHHHHHHHH
Confidence 2356666665553
No 148
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.94 E-value=2.9e-11 Score=135.46 Aligned_cols=118 Identities=19% Similarity=0.257 Sum_probs=66.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEE---CCEecChh-h-hcCeEEEEcCCCCCCC----CCCHHH
Q 048718 536 KLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILV---NGKVASIQ-S-YKRIIGFVPQDDIVHG----NLTVEE 606 (1118)
Q Consensus 536 ~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~i---nG~~~~~~-~-~r~~IgyV~Qd~~l~~----~LTV~E 606 (1118)
.+.+|++++|+||||+|||||+|+|+|+.. +.+|+|.+ +|+..... . ++..+||++|.+.+.. .+|+ |
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-H
Confidence 346899999999999999999999999987 57999998 77654321 1 2222799999987765 6899 8
Q ss_pred HHH--HHHh------hccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 048718 607 NLW--FSAR------CRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKR 661 (1118)
Q Consensus 607 nL~--f~a~------lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQR 661 (1118)
+|. |... ++........+....++++++.++|.+.+..... .++.|++||
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~-----~lls~~~~~ 303 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYV-----EFMTEIKDR 303 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH-----HHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHH-----HHHHHHhhc
Confidence 883 4311 1111100111122358899999999864433322 277777763
No 149
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.92 E-value=7.7e-13 Score=152.79 Aligned_cols=170 Identities=15% Similarity=0.121 Sum_probs=115.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC----CC------CCceeEEEECCEecCh----hhhcCe---EEEEcCCCCC
Q 048718 536 KLSPGRVSAVMGPSGAGKTTFLSALKGRV----PG------CIMSGTILVNGKVASI----QSYKRI---IGFVPQDDIV 598 (1118)
Q Consensus 536 ~I~~GEi~aIlGpnGSGKSTLLkiLaGl~----~~------~~~sG~I~inG~~~~~----~~~r~~---IgyV~Qd~~l 598 (1118)
.+++|+.++|+|+||||||||+|+|+|.. .. .|..|.|.++|..+.. ...++. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 44689999999999999999999999932 11 1578999998843211 011222 3578888888
Q ss_pred CCCCCHHHHH--HHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCC--CE
Q 048718 599 HGNLTVEENL--WFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEP--SL 674 (1118)
Q Consensus 599 ~~~LTV~EnL--~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P--~l 674 (1118)
...++..|+| .|...++. ++.++..++..+ +.. +..+||+. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~--d~~-----i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD--DAE-----IIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC--TTC-----SSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc--cce-----eeeecccc------------Ccchhh
Confidence 8888876665 44333221 111222222211 121 22366653 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HHCCCEEEEEEcCCcHHHHhccCcEE-EEecCc-EEEEecChh
Q 048718 675 LILDEPTSGLDSSSSQLLLRALRRE-ALEGVNICTVVHQPSYALFRMFDDLI-LLAKGG-VIVYHGPVK 740 (1118)
Q Consensus 675 LlLDEPTsGLD~~sa~~i~~~Lr~l-a~~G~TIIvvtHq~~~~i~~~~D~vi-vL~~GG-~iv~~G~~~ 740 (1118)
+++|||+.++|+......++.++.+ ...|.|++ +|.... +.+++|++. +|.+ | ++++.|+..
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~-~~~l~~~i~~~L~~-G~~~~~~~~~~ 209 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKE-EQAIIEKVYQYLTE-TKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHH-HHHHHHHHHHHHHT-TCSCGGGSCCC
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHH-HHHHHHHHHHHhcc-CCceeecCCCC
Confidence 9999999999999999999999887 66677764 998764 568899998 7755 6 677766654
No 150
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.86 E-value=8.4e-10 Score=129.53 Aligned_cols=179 Identities=16% Similarity=0.114 Sum_probs=108.7
Q ss_pred ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcee-EEEECCEecChhhhcCe-EEEEcCCCCCCCCCCH
Q 048718 527 KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSG-TILVNGKVASIQSYKRI-IGFVPQDDIVHGNLTV 604 (1118)
Q Consensus 527 k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG-~I~inG~~~~~~~~r~~-IgyV~Qd~~l~~~LTV 604 (1118)
-..|+++.+-+++|+++.|.|+||+|||||+..|++... +..| .|.|.+...+...+..+ ++... ....
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~--~~~g~~Vl~~s~E~s~~~l~~r~~~~~~-------~~~~ 260 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA--TKTNENVAIFSLEMSAQQLVMRMLCAEG-------NINA 260 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH--HHSSCCEEEEESSSCHHHHHHHHHHHHH-------TCCH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH--HhCCCcEEEEECCCCHHHHHHHHHHHHc-------CCCH
Confidence 356888888899999999999999999999999998653 1123 33333222111111100 00000 0000
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCC
Q 048718 605 EENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMV--MEPSLLILDEPTS 682 (1118)
Q Consensus 605 ~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl--~~P~lLlLDEPTs 682 (1118)
+.+ +. ......+ ..++.+.++.++..+..-... .++|++|.+ +.++.++ .+|+++++|+++.
T Consensus 261 -~~l------~~-g~l~~~~-~~~~~~a~~~l~~~~l~i~d~-----~~~s~~~i~--~~~~~l~~~~~~~livID~l~~ 324 (454)
T 2r6a_A 261 -QNL------RT-GKLTPED-WGKLTMAMGSLSNAGIYIDDT-----PSIRVSDIR--AKCRRLKQESGLGMIVIDYLQL 324 (454)
T ss_dssp -HHH------HT-SCCCHHH-HHHHHHHHHHHHSSCEEEECC-----TTCCHHHHH--HHHHHHHTTTCCCEEEEECGGG
T ss_pred -HHH------hc-CCCCHHH-HHHHHHHHHHHhcCCEEEECC-----CCCCHHHHH--HHHHHHHHHcCCCEEEEccHHH
Confidence 001 10 1223222 234555666654433222111 349999986 5667776 6899999999998
Q ss_pred CCCH--------HHHHHHHHHHHHHHHC-CCEEEEEEc---------C--CcH-------HHHhccCcEEEEecC
Q 048718 683 GLDS--------SSSQLLLRALRREALE-GVNICTVVH---------Q--PSY-------ALFRMFDDLILLAKG 730 (1118)
Q Consensus 683 GLD~--------~sa~~i~~~Lr~la~~-G~TIIvvtH---------q--~~~-------~i~~~~D~vivL~~G 730 (1118)
..+. ....++.+.|+.++++ |.+||+++| + |.. .+...+|.|++|.++
T Consensus 325 ~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~ 399 (454)
T 2r6a_A 325 IQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRD 399 (454)
T ss_dssp SCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEET
T ss_pred hccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecc
Confidence 7742 3346777888888855 999999999 2 321 355789999999765
No 151
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.84 E-value=1.6e-10 Score=122.19 Aligned_cols=60 Identities=15% Similarity=0.139 Sum_probs=44.3
Q ss_pred hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-HCCCEEEEEEcCCcHH-------HHhccCcEEEEec
Q 048718 670 MEPSLLILDEPTSGL--DSSSSQLLLRALRREA-LEGVNICTVVHQPSYA-------LFRMFDDLILLAK 729 (1118)
Q Consensus 670 ~~P~lLlLDEPTsGL--D~~sa~~i~~~Lr~la-~~G~TIIvvtHq~~~~-------i~~~~D~vivL~~ 729 (1118)
.+|+++++|+++..+ |+....+++..|.+++ +.|.|||+++|..... +.+.+|.++.|..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 6655566666666665 5699999999987641 3467788888864
No 152
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.79 E-value=2.7e-09 Score=119.52 Aligned_cols=112 Identities=19% Similarity=0.210 Sum_probs=77.5
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHHHHHHHHh
Q 048718 534 TGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSAR 613 (1118)
Q Consensus 534 Sl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~ 613 (1118)
++..++|++++|+|+|||||||+++.|++.+. +..|+|.+.+.+.. |. ...|.
T Consensus 98 ~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D~~----r~---------------~a~eq------ 150 (306)
T 1vma_A 98 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAADTF----RA---------------AAIEQ------ 150 (306)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECTT----CH---------------HHHHH------
T ss_pred cccCCCCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEccccc----cH---------------HHHHH------
Confidence 33456899999999999999999999999886 34567776654321 10 00111
Q ss_pred hccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH---HHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048718 614 CRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRV---NVGLEMVMEPSLLILDEPTSGLDSSSSQ 690 (1118)
Q Consensus 614 lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRV---sIArALl~~P~lLlLDEPTsGLD~~sa~ 690 (1118)
+..+++.+|+.. +. ..|||+.+++ +|++++..+|+++|+|||.. .....
T Consensus 151 ---------------L~~~~~~~gl~~-----~~-----~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~ 202 (306)
T 1vma_A 151 ---------------LKIWGERVGATV-----IS-----HSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKK 202 (306)
T ss_dssp ---------------HHHHHHHHTCEE-----EC-----CSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHH
T ss_pred ---------------HHHHHHHcCCcE-----Ee-----cCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHH
Confidence 233445556542 11 3789999999 99999999999999999974 33445
Q ss_pred HHHHHHHHHH
Q 048718 691 LLLRALRREA 700 (1118)
Q Consensus 691 ~i~~~Lr~la 700 (1118)
.+++.|+.+.
T Consensus 203 ~l~~eL~~l~ 212 (306)
T 1vma_A 203 NLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5666665553
No 153
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.73 E-value=2.5e-08 Score=110.93 Aligned_cols=118 Identities=19% Similarity=0.084 Sum_probs=81.9
Q ss_pred eeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHHHHHH
Q 048718 531 RSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLWF 610 (1118)
Q Consensus 531 ~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f 610 (1118)
+++++. +|++++|+|+||+||||++..|++.+. +..|+|.+.+.+..... ++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~~~~~------------------~~-~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQRPA------------------AR-EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCSSCHH------------------HH-HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcccHh------------------HH-HHH--
Confidence 677887 899999999999999999999999986 34677777665432110 00 000
Q ss_pred HHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHH
Q 048718 611 SARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEP-TSGLDSSSS 689 (1118)
Q Consensus 611 ~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEP-TsGLD~~sa 689 (1118)
..+.+..|+....... +..-.+.+|.+|+.++..+++++|+||| +.++|....
T Consensus 146 -------------------~~~~~~~~l~~~~~~~-------~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEVMD-------GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp -------------------HHHHHHHTCCEEECCT-------TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred -------------------HHhcccCCeEEEEcCC-------CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 0122334554321100 1234456789999998899999999999 999999888
Q ss_pred HHHHHHHHHH
Q 048718 690 QLLLRALRRE 699 (1118)
Q Consensus 690 ~~i~~~Lr~l 699 (1118)
.++.+.++.+
T Consensus 200 ~~l~~~~~~~ 209 (295)
T 1ls1_A 200 GELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhc
Confidence 8887776554
No 154
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.72 E-value=5.5e-10 Score=132.85 Aligned_cols=164 Identities=13% Similarity=0.071 Sum_probs=98.5
Q ss_pred eeEEEEeCCeEEEEECCCCCcHHHHHHHHHc--CCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCC--CHHHH
Q 048718 532 SVTGKLSPGRVSAVMGPSGAGKTTFLSALKG--RVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNL--TVEEN 607 (1118)
Q Consensus 532 nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaG--l~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~L--TV~En 607 (1118)
.+.+.+.++..++|.|++||||||+|++|.. +.. ...|+|.+.+.+.....+ +....+|++ +|.++
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~--~~p~~v~l~liDpK~~el--------~~~~~lPhl~~~Vvtd 228 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYK--AQPEDVRFIMIDPKMLEL--------SVYEGIPHLLTEVVTD 228 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTT--CCTTTEEEEEECCSSSGG--------GGGTTCTTBSSSCBCS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHh--CCCceEEEEEECCchhhh--------hhhccCCcccceeecC
Confidence 4667778899999999999999999999875 333 234666665554321111 111112222 22223
Q ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccc--cccCccCCCCCHHHHHHH----------HHHHHHhhCCC-E
Q 048718 608 LWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDS--LVGTVEKRGISGGQRKRV----------NVGLEMVMEPS-L 674 (1118)
Q Consensus 608 L~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt--~vg~~~~rgLSGGERQRV----------sIArALl~~P~-l 674 (1118)
...+...- .....+.+.+ .++++.+|+.+..+. .+. ..+||||+||. .+++++...|. +
T Consensus 229 ~~~a~~~L---~~~~~EmerR-~~ll~~~Gv~~i~~yn~~~~----~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~iv 300 (512)
T 2ius_A 229 MKDAANAL---RWCVNEMERR-YKLMSALGVRNLAGYNEKIA----EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIV 300 (512)
T ss_dssp HHHHHHHH---HHHHHHHHHH-HHHHHHTTCSSHHHHHHHHH----HHHHTTCCCBCTTC---------CCBCCCCCEEE
T ss_pred HHHHHHHH---HHHHHHHHHH-HHHHHHcCCccHHHHHHHHH----HHhhcCCcccccccccccchhccccccccCCcEE
Confidence 32222110 0112333334 467888888765332 221 13788888753 35666778898 7
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHH----CCCEEEEEEcCCc
Q 048718 675 LILDEPTSGLDSSSSQLLLRALRREAL----EGVNICTVVHQPS 714 (1118)
Q Consensus 675 LlLDEPTsGLD~~sa~~i~~~Lr~la~----~G~TIIvvtHq~~ 714 (1118)
+++||++.-+|.. ..++.+.|..+++ .|.++|++||+++
T Consensus 301 lvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 301 VLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 8999999988843 3455566655543 2789999999998
No 155
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.68 E-value=1.5e-11 Score=134.37 Aligned_cols=124 Identities=15% Similarity=0.154 Sum_probs=83.0
Q ss_pred ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcCeEEEEcCCCC-CCCCC
Q 048718 527 KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKRIIGFVPQDDI-VHGNL 602 (1118)
Q Consensus 527 k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~IgyV~Qd~~-l~~~L 602 (1118)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++.. ...++.+++++|... ..+.+
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 35788889999999 89999999999999999999874 6889998864311 122345677888753 55677
Q ss_pred CHHHHHHHHHhhccCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCE
Q 048718 603 TVEENLWFSARCRLSA-DLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSL 674 (1118)
Q Consensus 603 TV~EnL~f~a~lr~~~-~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~l 674 (1118)
++.|++......+... .....+....+.+++ . .|||||+||+.|++++..+|++
T Consensus 136 ~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll-------------~-----~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 136 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-------------V-----EMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEETHHHHHCC--------CHHHHHHHHHHH-------------H-----HHTTCCTTCCEEEEEEESCTTS
T ss_pred EehhhhHhhhcccccccCCcchHHHHHHHHHH-------------H-----HHhCCCCCCCEEEEEecCCchh
Confidence 8888885432211100 000111222233322 1 2899999999999999999876
No 156
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.68 E-value=2.5e-08 Score=113.57 Aligned_cols=146 Identities=20% Similarity=0.273 Sum_probs=83.1
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhc
Q 048718 536 KLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCR 615 (1118)
Q Consensus 536 ~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr 615 (1118)
-+++|+++.|.||||+|||||+..|+.... ... ..+.|+.-+..+- + . ++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~--~~g----------------~~vlyi~~E~~~~------~-~-~a---- 106 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQ--AAG----------------GIAAFIDAEHALD------P-E-YA---- 106 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH--HTT----------------CCEEEEESSCCCC------H-H-HH----
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH--hCC----------------CeEEEEECCCCcC------H-H-HH----
Confidence 578999999999999999999888876432 011 2344544332111 0 0 11
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCC---------
Q 048718 616 LSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVME--PSLLILDEPTSGL--------- 684 (1118)
Q Consensus 616 ~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~--P~lLlLDEPTsGL--------- 684 (1118)
+.+|+.. .+-.+-. ..++ .+-+.++++++.+ |+++++||+++.+
T Consensus 107 ------------------~~lG~~~-~~l~i~~----~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~ 161 (349)
T 2zr9_A 107 ------------------KKLGVDT-DSLLVSQ----PDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEM 161 (349)
T ss_dssp ------------------HHTTCCG-GGCEEEC----CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC-
T ss_pred ------------------HHcCCCH-HHeEEec----CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhcccc
Confidence 1122210 0000111 1233 2446678888765 9999999999998
Q ss_pred -CH---HHHHHHHHHHHHH---H-HCCCEEEEEEcCCcH---------------HHHhccCcEEEEecCcEEEEec
Q 048718 685 -DS---SSSQLLLRALRRE---A-LEGVNICTVVHQPSY---------------ALFRMFDDLILLAKGGVIVYHG 737 (1118)
Q Consensus 685 -D~---~sa~~i~~~Lr~l---a-~~G~TIIvvtHq~~~---------------~i~~~~D~vivL~~GG~iv~~G 737 (1118)
|+ ..++.+.+.|+++ + +.|.|||++.|.... .+...+|.++.+.+ ++++..|
T Consensus 162 gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr-~~~~k~g 236 (349)
T 2zr9_A 162 GDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRR-IETLKDG 236 (349)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEE-EEEECSS
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEE-eeeeecC
Confidence 33 2223444455554 3 459999999996431 24456787777765 3444333
No 157
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.67 E-value=1.1e-09 Score=113.20 Aligned_cols=68 Identities=18% Similarity=0.250 Sum_probs=47.1
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcCeEEEEcCCCCCCCCCCHHHH
Q 048718 534 TGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKRIIGFVPQDDIVHGNLTVEEN 607 (1118)
Q Consensus 534 Sl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~IgyV~Qd~~l~~~LTV~En 607 (1118)
|+++++|++++|+||||||||||+++|+|+.+ .+.+++..... ...+..++|++|++.+++.+++.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGA 71 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTC
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCc
Confidence 56778999999999999999999999999863 35666644322 1234568999998766555444443
No 158
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.65 E-value=6.6e-09 Score=122.88 Aligned_cols=51 Identities=16% Similarity=0.091 Sum_probs=47.5
Q ss_pred ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEec
Q 048718 527 KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVA 580 (1118)
Q Consensus 527 k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~ 580 (1118)
.++|+++|++|++ |+++|+|||||||||||++|+|+++ +++|+|.++|+++
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~ 67 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI--PDLTLLNFRNTTE 67 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC--CCTTTCCCCCTTS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEc
Confidence 4589999999999 9999999999999999999999998 6899999999765
No 159
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.64 E-value=2.2e-11 Score=130.98 Aligned_cols=124 Identities=15% Similarity=0.158 Sum_probs=82.1
Q ss_pred ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh---hhhcCeEEEEcCCCC-CCCCC
Q 048718 527 KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI---QSYKRIIGFVPQDDI-VHGNL 602 (1118)
Q Consensus 527 k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~IgyV~Qd~~-l~~~L 602 (1118)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++.. ...++.+++++|... ..+.+
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence 35788888888899 99999999999999999999874 6889988854311 112344677787643 45667
Q ss_pred CHHHHHHHHHhhccCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCE
Q 048718 603 TVEENLWFSARCRLSA-DLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSL 674 (1118)
Q Consensus 603 TV~EnL~f~a~lr~~~-~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~l 674 (1118)
++.|++......+... .....+....+.+++. .|||||+||+.|++++..+|++
T Consensus 112 ~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp EEEETHHHHHC---------CHHHHHHHHHHHH------------------HHHTCCTTCCEEEEEEESCGGG
T ss_pred EEehhhhhhhcccCccccccchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEccCCchh
Confidence 7888884332211100 0011122222333322 2889999999999999999976
No 160
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.64 E-value=4.3e-10 Score=136.56 Aligned_cols=161 Identities=20% Similarity=0.179 Sum_probs=99.7
Q ss_pred CcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCC-------
Q 048718 525 KNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDI------- 597 (1118)
Q Consensus 525 ~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~------- 597 (1118)
+...+++++++.+.+|+.++|+||||+|||||+++|+++.++ ..-|.+.+++.+.+ .....++|+|+...
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~-~~~~~~~~~~~~~~--~~~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPT-ETLEDILVFPNPED--ENMPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCC-SSCEEEEEECCTTC--TTSCEEEEEETTHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCc-ccCCeEEEeCCccc--ccCCcEEEEecchHHHHHHHH
Confidence 345788999999999999999999999999999999999873 23488888886543 24556889887531
Q ss_pred ---------------CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 048718 598 ---------------VHGNLTVEENLWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRV 662 (1118)
Q Consensus 598 ---------------l~~~LTV~EnL~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRV 662 (1118)
.+..+++.+|+........+...... .....-+.+|..+..... ..++|+|++|++
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~----~~~~~~~L~G~~~~~~~~-----~g~~~~g~~~~i 192 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA----TGAHAGALLGDVRHDPFQ-----SGGLGTPAHERV 192 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC----TTCCHHHHHCEECCCCC---------CCCCGGGGE
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc----CCCCHHhcCceEEechhh-----cCCccccccccc
Confidence 11112222221110000000000000 000011122221111111 135999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048718 663 NVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRR 698 (1118)
Q Consensus 663 sIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~ 698 (1118)
..++....++.+||+||... |++.....+++.|.+
T Consensus 193 ~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 193 EPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp ECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999999988 899888888777753
No 161
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.63 E-value=4e-09 Score=108.51 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 048718 660 KRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRRE 699 (1118)
Q Consensus 660 QRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~l 699 (1118)
+.+.+|++|+.+|+++++| ||+||.....++++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 4578899999999999999 9999999999999988653
No 162
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.56 E-value=3.5e-08 Score=109.94 Aligned_cols=140 Identities=16% Similarity=0.150 Sum_probs=83.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccC
Q 048718 538 SPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLS 617 (1118)
Q Consensus 538 ~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~ 617 (1118)
.+|++++|+|+||+||||+++.|++.+. +.+| ++|.++.+|.. ..++.|.+...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~--~~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~---- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM--LEKH---------------KKIAFITTDTY---RIAAVEQLKTYAE---- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH--HTTC---------------CCEEEEECCCS---STTHHHHHHHHHT----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH--HhcC---------------CEEEEEecCcc---cchHHHHHHHHHH----
Confidence 4799999999999999999999999875 1234 35777777753 3456666654321
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 048718 618 ADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALR 697 (1118)
Q Consensus 618 ~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr 697 (1118)
.+|+.-. . ..+. ..-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+
T Consensus 159 -----------------~~gl~~~----~------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 159 -----------------LLQAPLE----V------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp -----------------TTTCCCC----B------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred -----------------hcCCCeE----e------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 1233211 0 0122 33355555 45999999999 99999876654444333
Q ss_pred HHH---HCCCEEEE-EEcCCcHHHHhccCcEEEEecCcEEEE
Q 048718 698 REA---LEGVNICT-VVHQPSYALFRMFDDLILLAKGGVIVY 735 (1118)
Q Consensus 698 ~la---~~G~TIIv-vtHq~~~~i~~~~D~vivL~~GG~iv~ 735 (1118)
.+. ..+..+++ ++|... .+.+.++++..+..+| ++.
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~g-iVl 246 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVNQ-YIF 246 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCCE-EEE
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCCE-EEE
Confidence 222 11333333 377654 3445566554444443 443
No 163
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.44 E-value=1e-07 Score=108.95 Aligned_cols=71 Identities=20% Similarity=0.285 Sum_probs=45.3
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEE-EECCEecChhhhcCeEEEEcCCCCCCCCCCHHHHH
Q 048718 536 KLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTI-LVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENL 608 (1118)
Q Consensus 536 ~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I-~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL 608 (1118)
=+.+|+++.|.||||+|||||+..|++... ...|.| ++++.......+.+++|+.+|+..+....++.+.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l 128 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQAL 128 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHH
Confidence 578999999999999999999999998754 233544 55554322222334456655554444344555444
No 164
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.41 E-value=9e-09 Score=110.65 Aligned_cols=73 Identities=16% Similarity=0.126 Sum_probs=49.5
Q ss_pred eEEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh--------
Q 048718 511 IEVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-------- 582 (1118)
Q Consensus 511 ~~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-------- 582 (1118)
..|+++|+...+. . ++++.+ ++++|+|||||||||||++|+|++. +++|+|.++|.++..
T Consensus 8 ~~l~l~~~~~~~~---~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~--~~~G~i~~~g~~~~~~~~~~~~~ 75 (227)
T 1qhl_A 8 RSLTLINWNGFFA---R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI--PDLTLLHFRNTTEAGATSGSRDK 75 (227)
T ss_dssp EEEEEEEETTEEE---E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS--CCTTTC-----------------
T ss_pred eEEEEEeeecccC---C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc--cCCCeEEECCEEcccCCcccccc
Confidence 3577788765441 1 455666 8999999999999999999999987 579999999976511
Q ss_pred ---hhhcCeEEEEcCC
Q 048718 583 ---QSYKRIIGFVPQD 595 (1118)
Q Consensus 583 ---~~~r~~IgyV~Qd 595 (1118)
...+..++||+|+
T Consensus 76 ~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 76 GLHGKLKAGVCYSMLD 91 (227)
T ss_dssp -CGGGBCSSEEEEEEE
T ss_pred chhhHhhcCcEEEEEe
Confidence 1235678999984
No 165
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.41 E-value=6.4e-09 Score=110.41 Aligned_cols=39 Identities=26% Similarity=0.225 Sum_probs=22.9
Q ss_pred ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHH-cCCC
Q 048718 527 KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALK-GRVP 565 (1118)
Q Consensus 527 k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLa-Gl~~ 565 (1118)
.+..+++||++++|++++|+||||||||||+++|+ |+.+
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 35788999999999999999999999999999999 9975
No 166
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.35 E-value=2e-07 Score=95.88 Aligned_cols=37 Identities=19% Similarity=0.278 Sum_probs=32.6
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048718 662 VNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREA 700 (1118)
Q Consensus 662 VsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la 700 (1118)
...|++|+.+|.++++| ||+||.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998887654
No 167
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.33 E-value=9.8e-10 Score=126.40 Aligned_cols=144 Identities=15% Similarity=0.162 Sum_probs=82.6
Q ss_pred ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCC-CCCCCCHH
Q 048718 527 KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDI-VHGNLTVE 605 (1118)
Q Consensus 527 k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~-l~~~LTV~ 605 (1118)
..+|+++++.+++|++++|+||||||||||+++|+|.. .|.+..-..+ ...+...+|++||... ++..++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~~~~~--~~~~~~~lg~~~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLP--LDRLNFELGVAIDQFLVVFEDVKGT 228 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSC--TTTHHHHHGGGTTCSCEEETTCCCS
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEEEecc--chhHHHHHHHhcchhHHHHHHHHHH
Confidence 46899999999999999999999999999999999953 5776652211 1112223667777654 23333322
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHH---HcCCCc-cc---cc--ccc--CccCCCCCHHHHHHHHHHHHHhhCCCE
Q 048718 606 ENLWFSARCRLSADLPKAEKVLVVERVIE---SLGLQH-IR---DS--LVG--TVEKRGISGGQRKRVNVGLEMVMEPSL 674 (1118)
Q Consensus 606 EnL~f~a~lr~~~~~~~~~~~~~v~~lL~---~lgL~~-~~---dt--~vg--~~~~rgLSGGERQRVsIArALl~~P~l 674 (1118)
..+. + +.... ........+...++ .+.+.. .. +. ..+ +.....+++|+++|+..+.+++..|++
T Consensus 229 ~~~~---r-~l~~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDL 303 (377)
T 1svm_A 229 GGES---R-DLPSG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYL 303 (377)
T ss_dssp TTTT---T-TCCCC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHH
T ss_pred HHHH---h-hcccc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCe
Confidence 1110 0 00000 00000112233332 000110 00 00 001 012334899999999998888899999
Q ss_pred EE-EeCCCC
Q 048718 675 LI-LDEPTS 682 (1118)
Q Consensus 675 Ll-LDEPTs 682 (1118)
++ ||+|+.
T Consensus 304 liyLd~~~~ 312 (377)
T 1svm_A 304 KHCLERSEF 312 (377)
T ss_dssp HHHHHTCTH
T ss_pred EEEEeCCHH
Confidence 87 999986
No 168
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.28 E-value=3.1e-08 Score=102.95 Aligned_cols=59 Identities=24% Similarity=0.208 Sum_probs=41.0
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChh--hhcCeEEEEcCCCCCC
Q 048718 535 GKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQ--SYKRIIGFVPQDDIVH 599 (1118)
Q Consensus 535 l~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~--~~r~~IgyV~Qd~~l~ 599 (1118)
+..++|++++|+||||||||||+++|++++ |.+.++|.++... ..+..+|+++|+...+
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~ 84 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTDEDRW 84 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCCcccc
Confidence 445789999999999999999999999965 7788888654321 1122457777764433
No 169
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.24 E-value=2.2e-06 Score=98.17 Aligned_cols=148 Identities=16% Similarity=0.187 Sum_probs=87.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCC---------CceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHH---HHH
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRVPGC---------IMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEE---NLW 609 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~~~~---------~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~E---nL~ 609 (1118)
+++|+|++|||||||+|.|+|..... +..|.|.++|.++. +....|++.+.+. ..|.. .+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~----~lve~f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPP----QIVDAFFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCCG----GGHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCH----HHHHHHHHHHH
Confidence 49999999999999999999976410 35789999986542 2233555554321 11221 111
Q ss_pred HHHh----hc-cCCCCCH---HHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH----HHH-hhCCCEEE
Q 048718 610 FSAR----CR-LSADLPK---AEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVG----LEM-VMEPSLLI 676 (1118)
Q Consensus 610 f~a~----lr-~~~~~~~---~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIA----rAL-l~~P~lLl 676 (1118)
.... +. .....+. .+....+.++++.+++.+..--.|.+ ...-+|+|+++|+.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~-- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFDV-- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE--
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCcE--
Confidence 1000 00 0111111 22233466778888876543111222 1223788899988887 554 334444
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHH
Q 048718 677 LDEPTSGLDSSSSQLLLRALRREAL 701 (1118)
Q Consensus 677 LDEPTsGLD~~sa~~i~~~Lr~la~ 701 (1118)
+|+|++|.....++.+.|.++..
T Consensus 331 --~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 --IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp --EECBTTTTBSHHHHHHHHHHHHH
T ss_pred --EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999887653
No 170
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.20 E-value=9.8e-07 Score=104.43 Aligned_cols=59 Identities=22% Similarity=0.308 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----HCCCEEEEEEcCCc
Q 048718 656 GGQRKRVNVGLEMVMEPSLLILDEP----------TSGLDSSSSQLLLRALRREA----LEGVNICTVVHQPS 714 (1118)
Q Consensus 656 GGERQRVsIArALl~~P~lLlLDEP----------TsGLD~~sa~~i~~~Lr~la----~~G~TIIvvtHq~~ 714 (1118)
|++++|..+++|....|.|||+||+ +.|.|......+.++|..+- ..+..||.+||+++
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 6778888999999999999999999 44677776666666676663 24678888999874
No 171
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.17 E-value=9.5e-07 Score=100.23 Aligned_cols=128 Identities=12% Similarity=0.180 Sum_probs=81.8
Q ss_pred eeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHHHH
Q 048718 529 LMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENL 608 (1118)
Q Consensus 529 IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL 608 (1118)
-|+.+.+-+.+|+++.|.|++|+|||||+.-|+.... . . ...+.|+.= .++..+.+
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a---~------~---------g~~Vl~fSl------Ems~~ql~ 90 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL---N------D---------DRGVAVFSL------EMSAEQLA 90 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH---H------T---------TCEEEEEES------SSCHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---H------c---------CCeEEEEeC------CCCHHHHH
Confidence 4555555678999999999999999999998876432 0 1 123444221 23433322
Q ss_pred HHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 048718 609 WFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSS 688 (1118)
Q Consensus 609 ~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~s 688 (1118)
. ++......+.+.+.++ |. ||++|.+|+..|...+.+++++|.|+|...
T Consensus 91 ~------------------Rlls~~~~v~~~~l~~---g~-----Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s----- 139 (338)
T 4a1f_A 91 L------------------RALSDLTSINMHDLES---GR-----LDDDQWENLAKCFDHLSQKKLFFYDKSYVR----- 139 (338)
T ss_dssp H------------------HHHHHHHCCCHHHHHH---TC-----CCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----
T ss_pred H------------------HHHHHhhCCCHHHHhc---CC-----CCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----
Confidence 1 1111111122222221 33 999999999999999999999999998654
Q ss_pred HHHHHHHHHHHHH-C-CCEEEEEEc
Q 048718 689 SQLLLRALRREAL-E-GVNICTVVH 711 (1118)
Q Consensus 689 a~~i~~~Lr~la~-~-G~TIIvvtH 711 (1118)
..+|...++.+.+ . |..+|+|-|
T Consensus 140 i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 140 IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 3356666777664 4 677777744
No 172
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.06 E-value=2.8e-07 Score=100.37 Aligned_cols=52 Identities=19% Similarity=0.361 Sum_probs=36.2
Q ss_pred EEEEEeE-EEEEcCCcceeeeeeEEEEeC---CeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 512 EVAFKDL-TITLKGKNKHLMRSVTGKLSP---GRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 512 ~l~~knL-s~~~~~~~k~IL~nVSl~I~~---GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.++++|| +++|. +.+++|+|+|++|.+ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~-~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD-EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec-CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999 99983 346799999999999 9999999999999999999999865
No 173
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.06 E-value=1.5e-06 Score=88.33 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=31.8
Q ss_pred eeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 531 RSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 531 ~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
+++++.+.+| +++|+||||||||||+++|.+++.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 7889999999 999999999999999999999875
No 174
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.03 E-value=1.1e-06 Score=90.43 Aligned_cols=30 Identities=27% Similarity=0.343 Sum_probs=26.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 536 KLSPGRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 536 ~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
+|++|++++|+||||||||||+++|+++..
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 578999999999999999999999999985
No 175
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.03 E-value=6e-06 Score=93.75 Aligned_cols=60 Identities=12% Similarity=0.142 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE--cCCc
Q 048718 653 GISGGQRKRVNVGLEMVMEPSLLILD-EPTSGLDSSSSQLLLRALRREALEGVNICTVV--HQPS 714 (1118)
Q Consensus 653 gLSGGERQRVsIArALl~~P~lLlLD-EPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvt--Hq~~ 714 (1118)
.+|+||+|++. +.+...++-|+++| +++.++|......+++.++.... +..+|++. ||..
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 48999999887 66666788889999 99999999988888877766533 78888888 6643
No 176
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.97 E-value=5.5e-08 Score=115.64 Aligned_cols=129 Identities=16% Similarity=0.166 Sum_probs=83.3
Q ss_pred eeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChh---hhcCeEEEEcCCCC-CCCCCC
Q 048718 528 HLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQ---SYKRIIGFVPQDDI-VHGNLT 603 (1118)
Q Consensus 528 ~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~---~~r~~IgyV~Qd~~-l~~~LT 603 (1118)
.+++++++.+++| ++|+||||+|||||+++|++... .+.|.++|.++... ...+.+..++|... ..|.+.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il 127 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 127 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEE
Confidence 4677788888888 89999999999999999999874 57888888654211 11233556676643 345555
Q ss_pred HHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 048718 604 VEENLWFSARCRLS-ADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTS 682 (1118)
Q Consensus 604 V~EnL~f~a~lr~~-~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTs 682 (1118)
+.|++......+.. ......+....+..++. .|||||+|+..|+++...+|++ |||+..
T Consensus 128 ~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 128 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp EEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred EEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 55655322111100 00112222233444442 2788999999999999999987 798875
No 177
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.96 E-value=1.2e-06 Score=90.91 Aligned_cols=127 Identities=17% Similarity=0.248 Sum_probs=69.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhhccCCCCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLP 621 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~lr~~~~~~ 621 (1118)
+++|+|+|||||||+.+.|+++ |...+++... .+... + +. .
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-------g~~~id~d~~----~~~~~----~-----~~-------------------~ 44 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-------GVPLVDADVV----AREVV----A-----KD-------------------S 44 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-------TCCEEEHHHH----HHHTT----C-----SS-------------------C
T ss_pred EEEEECCCCCCHHHHHHHHHHC-------CCcccchHHH----HHHHc----c-----CC-------------------h
Confidence 6899999999999999999983 2223332110 11000 0 00 0
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048718 622 KAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREAL 701 (1118)
Q Consensus 622 ~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~ 701 (1118)
..+.++.+.+|.... .+.|+.+|..++..+..+|..+.++ ++.++|.....+.+.++..
T Consensus 45 -----~~~~~i~~~~g~~~~------------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-- 103 (206)
T 1jjv_A 45 -----PLLSKIVEHFGAQIL------------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-- 103 (206)
T ss_dssp -----HHHHHHHHHHCTTCC------------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--
T ss_pred -----HHHHHHHHHhCHHHh------------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--
Confidence 123445555664311 3678889999998888887654333 3345565555554444321
Q ss_pred CCCEEEEEEcCCcHH-HHhccCcEEEEe
Q 048718 702 EGVNICTVVHQPSYA-LFRMFDDLILLA 728 (1118)
Q Consensus 702 ~G~TIIvvtHq~~~~-i~~~~D~vivL~ 728 (1118)
.+.++|+.+|...+. +...+|.+++|.
T Consensus 104 ~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 104 TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 355788888876543 235677766663
No 178
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.94 E-value=1.4e-06 Score=98.12 Aligned_cols=80 Identities=14% Similarity=0.099 Sum_probs=57.6
Q ss_pred eeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecCh-------hhh-----cCeEEEE-cCC
Q 048718 529 LMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASI-------QSY-----KRIIGFV-PQD 595 (1118)
Q Consensus 529 IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-------~~~-----r~~IgyV-~Qd 595 (1118)
+++++++.+++|++++|+|+||+||||++..|++.+. +..|+|.+.+.+... ..+ +..+.++ +|.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~--~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA--ELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 3467888888999999999999999999999999886 457899887765421 123 5568999 676
Q ss_pred CCCCCCCCHHHHHHH
Q 048718 596 DIVHGNLTVEENLWF 610 (1118)
Q Consensus 596 ~~l~~~LTV~EnL~f 610 (1118)
....|..++.+++..
T Consensus 172 ~~~~p~~~~~~~l~~ 186 (320)
T 1zu4_A 172 LNADPASVVFDAIKK 186 (320)
T ss_dssp TTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 544444444454443
No 179
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.93 E-value=8.3e-06 Score=101.89 Aligned_cols=74 Identities=22% Similarity=0.172 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEE-EcCCcHHHHhccCcEEEE
Q 048718 653 GISGGQRKRVNVGLEMVMEPSLLILDEPTS-GLDSSSSQLLLRALRREALEGVNICTV-VHQPSYALFRMFDDLILL 727 (1118)
Q Consensus 653 gLSGGERQRVsIArALl~~P~lLlLDEPTs-GLD~~sa~~i~~~Lr~la~~G~TIIvv-tHq~~~~i~~~~D~vivL 727 (1118)
-+|+|+.+|..++..++.+++++++|||.. +||......+++.+........+|+++ ||+++ .+.+++++..++
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~~vi 265 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDAPLL 265 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSCCEE
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCCCcc
Confidence 389999999999999999999999999995 999887777777665544345677774 88765 455677754444
No 180
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.92 E-value=7.8e-07 Score=96.25 Aligned_cols=57 Identities=28% Similarity=0.249 Sum_probs=47.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHH---cCCCCCCceeEEE--------ECCEecC----hhhhcCeEEEEcCCC
Q 048718 538 SPGRVSAVMGPSGAGKTTFLSALK---GRVPGCIMSGTIL--------VNGKVAS----IQSYKRIIGFVPQDD 596 (1118)
Q Consensus 538 ~~GEi~aIlGpnGSGKSTLLkiLa---Gl~~~~~~sG~I~--------inG~~~~----~~~~r~~IgyV~Qd~ 596 (1118)
++|++++|+|||||||||++++|+ |+.. +++|.|. .+|.+.. ...+++.+++++|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 689999999999999999999999 8865 6889998 8887652 234667789999754
No 181
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.86 E-value=7.1e-07 Score=92.67 Aligned_cols=51 Identities=25% Similarity=0.281 Sum_probs=41.1
Q ss_pred ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEE--EECCEec
Q 048718 527 KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTI--LVNGKVA 580 (1118)
Q Consensus 527 k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I--~inG~~~ 580 (1118)
....+.+++..++|++++|+||||||||||+++|++++. ..|.+ .++|.++
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNV 64 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHH
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchh
Confidence 345566677778999999999999999999999999874 45766 7877543
No 182
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.83 E-value=2.4e-06 Score=87.75 Aligned_cols=26 Identities=42% Similarity=0.699 Sum_probs=24.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 540 GRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 540 GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
|++++|+||||||||||+++|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 67899999999999999999999986
No 183
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.83 E-value=6.4e-06 Score=101.28 Aligned_cols=133 Identities=17% Similarity=0.111 Sum_probs=78.9
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecC---hhhhcCeEEEEcCCCCCCCCCCHHHHHHH
Q 048718 534 TGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVAS---IQSYKRIIGFVPQDDIVHGNLTVEENLWF 610 (1118)
Q Consensus 534 Sl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f 610 (1118)
++.+++|+.++|+|++|+|||||++.|++........|+| .+|.... ....++.+++.+|...++.. ++..
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~---- 76 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRV---- 76 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEE----
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEE----
Confidence 3456789999999999999999999999776432356777 5554332 12234455665554433221 1100
Q ss_pred HHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 048718 611 SARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQ 690 (1118)
Q Consensus 611 ~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~sa~ 690 (1118)
...|+. |. ..++ .......-..+.-++++| |+.|+++.+..
T Consensus 77 -----------------------------nliDTp-G~---~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~ 117 (665)
T 2dy1_A 77 -----------------------------FLLDAP-GY---GDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTER 117 (665)
T ss_dssp -----------------------------EEEECC-CS---GGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH
T ss_pred -----------------------------EEEeCC-Cc---cchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH
Confidence 112221 11 0011 112222335688899999 99999988763
Q ss_pred HHHHHHHHHHHCCCEEEEEEcCCcH
Q 048718 691 LLLRALRREALEGVNICTVVHQPSY 715 (1118)
Q Consensus 691 ~i~~~Lr~la~~G~TIIvvtHq~~~ 715 (1118)
.++.+...+..+|++.|..+.
T Consensus 118 ----~~~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 118 ----AWTVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp ----HHHHHHHTTCCEEEEEECGGG
T ss_pred ----HHHHHHHccCCEEEEecCCch
Confidence 333334468889999998774
No 184
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.78 E-value=9.2e-06 Score=84.16 Aligned_cols=39 Identities=21% Similarity=0.077 Sum_probs=24.8
Q ss_pred cceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 526 NKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 526 ~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
...+++||||.+.+|++++|+|++||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 356899999999999999999999999999999999865
No 185
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.75 E-value=4.1e-05 Score=86.83 Aligned_cols=34 Identities=24% Similarity=0.452 Sum_probs=26.9
Q ss_pred ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 048718 527 KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 527 k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl 563 (1118)
..+|+++++.++ .++|+|++||||||||+.|+|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 357888888887 8999999999999999999994
No 186
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.74 E-value=3.9e-07 Score=102.72 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=23.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
+++|+||||||||||+++|.+++.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 999999999999999999999875
No 187
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.70 E-value=7.4e-05 Score=83.94 Aligned_cols=44 Identities=14% Similarity=0.086 Sum_probs=35.3
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEEcCCc
Q 048718 670 MEPSLLILDEPTSGLDSSSSQLLLRALRREAL---EGVNICTVVHQPS 714 (1118)
Q Consensus 670 ~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~---~G~TIIvvtHq~~ 714 (1118)
.+|.+|++||+... |......+.+.+..+.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888887766655 5788999999875
No 188
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.69 E-value=1.6e-06 Score=87.48 Aligned_cols=37 Identities=22% Similarity=0.425 Sum_probs=31.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEec
Q 048718 538 SPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVA 580 (1118)
Q Consensus 538 ~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~ 580 (1118)
.+|++++|+|+||||||||++.|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCccc
Confidence 479999999999999999999999864 5677777543
No 189
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.67 E-value=0.00018 Score=78.64 Aligned_cols=71 Identities=20% Similarity=0.277 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHH----CCCEEEEEEcCCc---HHH
Q 048718 655 SGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSS----------SSQLLLRALRREAL----EGVNICTVVHQPS---YAL 717 (1118)
Q Consensus 655 SGGERQRVsIArALl~~P~lLlLDEPTsGLD~~----------sa~~i~~~Lr~la~----~G~TIIvvtHq~~---~~i 717 (1118)
+++++.|..++.+...+|.+|++||+.+-++.. ....++..+..... .+..||.+++++. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 356777777888888899999999998776532 22234444433211 2345677787643 344
Q ss_pred HhccCcEE
Q 048718 718 FRMFDDLI 725 (1118)
Q Consensus 718 ~~~~D~vi 725 (1118)
.+.|+.++
T Consensus 177 ~~R~~~~i 184 (297)
T 3b9p_A 177 LRRFTKRV 184 (297)
T ss_dssp HHHCCEEE
T ss_pred HhhCCeEE
Confidence 44555443
No 190
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.62 E-value=2.1e-05 Score=80.30 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=29.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEE
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILV 575 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~i 575 (1118)
+|++++|+||||||||||++.|+++.++ ...|.|.+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeec
Confidence 6999999999999999999999998752 24555544
No 191
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.61 E-value=3.5e-05 Score=86.13 Aligned_cols=131 Identities=11% Similarity=0.151 Sum_probs=80.8
Q ss_pred eeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHHH
Q 048718 528 HLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEEN 607 (1118)
Q Consensus 528 ~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~En 607 (1118)
.-|+.+.+-+.+|+++.|.|++|+|||||+..++.... ..| ..+.|+.= .++..+.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a---~~g---------------~~vl~~sl------E~s~~~l 111 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS---DND---------------DVVNLHSL------EMGKKEN 111 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH---TTT---------------CEEEEEES------SSCHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---HcC---------------CeEEEEEC------CCCHHHH
Confidence 34666666689999999999999999999988875321 011 22444332 1344332
Q ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 048718 608 LWFSARCRLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSS 687 (1118)
Q Consensus 608 L~f~a~lr~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlLDEPTsGLD~~ 687 (1118)
..- +......+.+.+..+.. ..||+++++|+..|...+.++++++.|+|...
T Consensus 112 ~~R------------------~~~~~~~i~~~~l~~~~------~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~---- 163 (315)
T 3bh0_A 112 IKR------------------LIVTAGSINAQKIKAAR------RDFASEDWGKLSMAIGEISNSNINIFDKAGQS---- 163 (315)
T ss_dssp HHH------------------HHHHHTTCCHHHHHSCH------HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB----
T ss_pred HHH------------------HHHHHcCCCHHHHhcCC------CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC----
Confidence 211 11111111111111110 12899999999999999999999999998643
Q ss_pred HHHHHHHHHHHHHHC-CCE--EEEEEc
Q 048718 688 SSQLLLRALRREALE-GVN--ICTVVH 711 (1118)
Q Consensus 688 sa~~i~~~Lr~la~~-G~T--IIvvtH 711 (1118)
..++...++++.++ |.. +|++-|
T Consensus 164 -~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 164 -VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp -HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred -HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 34566667777654 666 777755
No 192
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.55 E-value=1.7e-05 Score=92.92 Aligned_cols=70 Identities=14% Similarity=0.204 Sum_probs=47.4
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCcEEE-EecCcEEEEecChh
Q 048718 670 MEPSLLILDEPTSGLDS-SSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDDLIL-LAKGGVIVYHGPVK 740 (1118)
Q Consensus 670 ~~P~lLlLDEPTsGLD~-~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~viv-L~~GG~iv~~G~~~ 740 (1118)
.+|++|++||+..-.+. .++..++..+..+...|+.||+++|.+...+..+.+++.- + ..|.++..++++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~-~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRF-QMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHH-HSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhc-cCCeEEEeCCCC
Confidence 48999999999887764 6778888989888777899999999864432112222221 2 234566666654
No 193
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.53 E-value=1.9e-05 Score=83.94 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=32.8
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEec
Q 048718 537 LSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVA 580 (1118)
Q Consensus 537 I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~ 580 (1118)
.++|++++|+|+||||||||+++|+|+ .|+|.+.+.+.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 368999999999999999999999997 47788877653
No 194
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.49 E-value=0.00064 Score=76.11 Aligned_cols=140 Identities=19% Similarity=0.184 Sum_probs=77.1
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhh
Q 048718 535 GKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARC 614 (1118)
Q Consensus 535 l~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~l 614 (1118)
+-+++|+++.|.||+|+|||||+..|+.........| | ....+.|+.-+..+ ...+-.....++
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g-----g-------~~~~vlyi~~e~~~----~~~~l~~~~~~~ 165 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG-----G-------LSGKAVYIDTEGTF----RWERIENMAKAL 165 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-----C-------CSCEEEEEESSSCC----CHHHHHHHHHHT
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccC-----C-------CCCeEEEEECCCCC----CHHHHHHHHHHh
Confidence 4678999999999999999999998886432000111 0 01234555433221 122222122111
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH-HHHHHHHHHHHh---hCCCEEEEeCCCCCCCH----
Q 048718 615 RLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGG-QRKRVNVGLEMV---MEPSLLILDEPTSGLDS---- 686 (1118)
Q Consensus 615 r~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGG-ERQRVsIArALl---~~P~lLlLDEPTsGLD~---- 686 (1118)
+... +++++.+ .+. +..++. +.+.+..++.++ .+++++++|+.++-++.
T Consensus 166 ----g~~~-------~~~~~~l--------~~~----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~ 222 (324)
T 2z43_A 166 ----GLDI-------DNVMNNI--------YYI----RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG 222 (324)
T ss_dssp ----TCCH-------HHHHHTE--------EEE----ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCT
T ss_pred ----CCCH-------HHHhccE--------EEE----eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcC
Confidence 1111 1122211 111 113333 345677788888 67999999999876532
Q ss_pred ----HH----HHHHHHHHHHHHHC-CCEEEEEEcCC
Q 048718 687 ----SS----SQLLLRALRREALE-GVNICTVVHQP 713 (1118)
Q Consensus 687 ----~s----a~~i~~~Lr~la~~-G~TIIvvtHq~ 713 (1118)
.. ..++++.|+.++++ +.+||++.|-.
T Consensus 223 ~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 223 RENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence 11 24555666666644 88888887653
No 195
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.49 E-value=0.00047 Score=77.99 Aligned_cols=140 Identities=14% Similarity=0.119 Sum_probs=76.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHHHHHHHHhh
Q 048718 535 GKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEENLWFSARC 614 (1118)
Q Consensus 535 l~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~l 614 (1118)
+-+++|+++.|.||+|+|||||+..|+.........| | ....+.|+.-+..+ ....-.....+.
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~g-----g-------~~~~vlyi~~E~~~----~~~~l~~~~~~~ 180 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG-----Y-------PGGKIIFIDTENTF----RPDRLRDIADRF 180 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTT-----B-------CCCEEEEEESSSCC----CHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccC-----C-------CCCeEEEEECCCCC----CHHHHHHHHHHc
Confidence 4578999999999999999999999887421001100 0 11235555443321 222222222221
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH-HHHHHHHHHHh----hCCCEEEEeCCCCCCCHH--
Q 048718 615 RLSADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQ-RKRVNVGLEMV----MEPSLLILDEPTSGLDSS-- 687 (1118)
Q Consensus 615 r~~~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGE-RQRVsIArALl----~~P~lLlLDEPTsGLD~~-- 687 (1118)
+... +++++.+-+. +..++.+ .+.+..++.++ .+++++++|+.++-++..
T Consensus 181 ----g~~~-------~~~l~~l~~~------------~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~ 237 (343)
T 1v5w_A 181 ----NVDH-------DAVLDNVLYA------------RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFS 237 (343)
T ss_dssp ----TCCH-------HHHHHTEEEE------------ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCC
T ss_pred ----CCCH-------HHHHhceeEe------------ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhc
Confidence 1111 1233322110 1123332 34555666666 579999999999866432
Q ss_pred ----------HHHHHHHHHHHHHHC-CCEEEEEEcCC
Q 048718 688 ----------SSQLLLRALRREALE-GVNICTVVHQP 713 (1118)
Q Consensus 688 ----------sa~~i~~~Lr~la~~-G~TIIvvtHq~ 713 (1118)
...++++.|+.++++ |.+||++.|-.
T Consensus 238 ~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 238 GRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 134556666677654 88888777753
No 196
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.44 E-value=6.5e-05 Score=77.89 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=26.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 536 KLSPGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 536 ~I~~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.+++|++++|+|+||||||||++.|++.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999999999976
No 197
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.42 E-value=6.7e-05 Score=78.47 Aligned_cols=28 Identities=32% Similarity=0.404 Sum_probs=26.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 538 SPGRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 538 ~~GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
++|++++|+||||||||||++.|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999999986
No 198
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.36 E-value=2.9e-05 Score=80.68 Aligned_cols=39 Identities=23% Similarity=0.154 Sum_probs=32.0
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECC
Q 048718 537 LSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNG 577 (1118)
Q Consensus 537 I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG 577 (1118)
.++|++++|+|+||||||||++.|+++++ +..|.|.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~--~~~~~v~~~~ 57 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR--EQGISVCVFH 57 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHh--hcCCeEEEec
Confidence 35799999999999999999999999875 2456666554
No 199
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.34 E-value=0.00099 Score=77.83 Aligned_cols=153 Identities=16% Similarity=0.229 Sum_probs=83.4
Q ss_pred eeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEEEcCCCCCCCCCCHHHH
Q 048718 528 HLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGFVPQDDIVHGNLTVEEN 607 (1118)
Q Consensus 528 ~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~En 607 (1118)
.-|+.+.+-+++|+++.|.|++|+|||||+.-|+.... ...| ..+.|+.= .++..+.
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a--~~~g---------------~~vl~~sl------E~~~~~l 244 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA--LKEG---------------VGVGIYSL------EMPAAQL 244 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH--HTTC---------------CCEEEEES------SSCHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH--HhCC---------------CeEEEEEC------CCCHHHH
Confidence 45677766789999999999999999999988876432 0011 11233211 1222221
Q ss_pred HHH--HHhhccC------CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh--hCCCEEEE
Q 048718 608 LWF--SARCRLS------ADLPKAEKVLVVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMV--MEPSLLIL 677 (1118)
Q Consensus 608 L~f--~a~lr~~------~~~~~~~~~~~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl--~~P~lLlL 677 (1118)
..- +.....+ ..+...+ ..++...++.+.-.... +.+ ..++|..+. .+.++.+. .+++++++
T Consensus 245 ~~R~~~~~~~i~~~~l~~g~l~~~~-~~~~~~a~~~l~~~~l~---i~d--~~~~s~~~l--~~~~~~l~~~~~~~lIvI 316 (444)
T 2q6t_A 245 TLRMMCSEARIDMNRVRLGQLTDRD-FSRLVDVASRLSEAPIY---IDD--TPDLTLMEV--RARARRLVSQNQVGLIII 316 (444)
T ss_dssp HHHHHHHHTTCCTTTCCGGGCCHHH-HHHHHHHHHHHHTSCEE---EEC--CTTCBHHHH--HHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHHHcCCCHHHHhCCCCCHHH-HHHHHHHHHHHhcCCEE---EEC--CCCCCHHHH--HHHHHHHHHHcCCCEEEE
Confidence 110 0000000 0122222 22333344433211111 111 123677664 34556665 48999999
Q ss_pred eCCCCCCCH----------HHHHHHHHHHHHHHHC-CCEEEEEEc
Q 048718 678 DEPTSGLDS----------SSSQLLLRALRREALE-GVNICTVVH 711 (1118)
Q Consensus 678 DEPTsGLD~----------~sa~~i~~~Lr~la~~-G~TIIvvtH 711 (1118)
|..+.-.+. ....++.+.|+.++++ +.+||+++|
T Consensus 317 D~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsq 361 (444)
T 2q6t_A 317 DYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQ 361 (444)
T ss_dssp ECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred cChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 998754332 1224677778888865 899999888
No 200
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.27 E-value=0.00027 Score=78.20 Aligned_cols=28 Identities=29% Similarity=0.544 Sum_probs=25.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 538 SPGRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 538 ~~GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
.++..+.|.||+|+|||||+++|++...
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 4678899999999999999999998763
No 201
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.27 E-value=0.00038 Score=81.45 Aligned_cols=27 Identities=26% Similarity=0.196 Sum_probs=24.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
++.+++++|++|+||||++..|++.+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999998765
No 202
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.18 E-value=6.8e-05 Score=90.30 Aligned_cols=42 Identities=33% Similarity=0.506 Sum_probs=35.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcee-EEE-ECCEe
Q 048718 536 KLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSG-TIL-VNGKV 579 (1118)
Q Consensus 536 ~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG-~I~-inG~~ 579 (1118)
.+++|++++|+|+||||||||+++|+|++. +..| +|. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~--~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM--EMGGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH--TTCSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc--ccCCceEEEECCcH
Confidence 457999999999999999999999999986 4555 674 78754
No 203
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.15 E-value=0.00014 Score=72.70 Aligned_cols=27 Identities=33% Similarity=0.458 Sum_probs=24.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
.|++++|+|+||||||||+++|++++.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999999764
No 204
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.13 E-value=0.0001 Score=82.28 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
.+..+.|.||+|+|||||++.+++...
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 577899999999999999999998653
No 205
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.10 E-value=0.00019 Score=75.57 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=26.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 538 SPGRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 538 ~~GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
.+|++++|+||||||||||++.|.+..+
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4899999999999999999999998875
No 206
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.08 E-value=0.00011 Score=78.02 Aligned_cols=67 Identities=15% Similarity=0.059 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCcHHHHhccCc
Q 048718 655 SGGQRKRVNVGLEMVMEPSLLILDEPTS-GLDSSSSQLLLRALRREALEGVNICTVVHQPSYALFRMFDD 723 (1118)
Q Consensus 655 SGGERQRVsIArALl~~P~lLlLDEPTs-GLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~~~i~~~~D~ 723 (1118)
..|...+.. ...+.+-+++++||.-. ++|......+++.+......-.+++++..-+...+.+++++
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCC
Confidence 456655553 34688999999999976 68877665555544433222235555533333334455543
No 207
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.96 E-value=0.00048 Score=86.54 Aligned_cols=30 Identities=30% Similarity=0.470 Sum_probs=27.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 536 KLSPGRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 536 ~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
.+++|+.++|+||||+|||||+++|++...
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 457899999999999999999999999875
No 208
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.96 E-value=0.00041 Score=69.29 Aligned_cols=30 Identities=23% Similarity=0.546 Sum_probs=24.2
Q ss_pred eeEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 048718 532 SVTGKLSPGRVSAVMGPSGAGKTTFLSALKG 562 (1118)
Q Consensus 532 nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaG 562 (1118)
+.++.+.+| +.+|+|||||||||||.+|.-
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 344555554 999999999999999999973
No 209
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.86 E-value=7.7e-05 Score=84.29 Aligned_cols=49 Identities=24% Similarity=0.234 Sum_probs=39.3
Q ss_pred ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECC
Q 048718 527 KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNG 577 (1118)
Q Consensus 527 k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG 577 (1118)
+.+++++++.+.+|.+++|+|++|+|||||++.|++.+. +..|+|.+-+
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~--~~~~~v~v~~ 91 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI--REGLKVAVIA 91 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH--HTTCCEEEEE
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH--hcCCeEEEEe
Confidence 457788888889999999999999999999999999875 2345554433
No 210
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.82 E-value=0.00019 Score=86.22 Aligned_cols=47 Identities=23% Similarity=0.386 Sum_probs=38.2
Q ss_pred eeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCE
Q 048718 529 LMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGK 578 (1118)
Q Consensus 529 IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~ 578 (1118)
+++++++.+ +|+.++|+||||+|||||+++|++... +..|.|.++|.
T Consensus 98 ~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~ 144 (543)
T 3m6a_A 98 AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGV 144 (543)
T ss_dssp HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC-
T ss_pred HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEeccc
Confidence 455555555 799999999999999999999999986 46788877774
No 211
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.81 E-value=0.00095 Score=77.85 Aligned_cols=40 Identities=20% Similarity=0.413 Sum_probs=31.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC-------C---CCceeEEEECCEec
Q 048718 541 RVSAVMGPSGAGKTTFLSALKGRVP-------G---CIMSGTILVNGKVA 580 (1118)
Q Consensus 541 Ei~aIlGpnGSGKSTLLkiLaGl~~-------~---~~~sG~I~inG~~~ 580 (1118)
-.++|+|+||+|||||+|.|+|... + .+..|.+.++|..+
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 3699999999999999999999853 0 13468999999753
No 212
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.75 E-value=0.0023 Score=70.88 Aligned_cols=46 Identities=13% Similarity=0.073 Sum_probs=34.6
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCc
Q 048718 669 VMEPSLLILDEPTS-GLDSSSSQLLLRALRREALEGVNICTVVHQPS 714 (1118)
Q Consensus 669 l~~P~lLlLDEPTs-GLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~ 714 (1118)
..++.+|++||... ..+......+...+..+...|..+|++++.+.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHP 142 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCCh
Confidence 35699999999865 23447788888888887777777888877543
No 213
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.74 E-value=0.00017 Score=83.09 Aligned_cols=52 Identities=21% Similarity=0.418 Sum_probs=46.1
Q ss_pred EEEEEeEEEEEcCCcceeee--------------eeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 512 EVAFKDLTITLKGKNKHLMR--------------SVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~--------------nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.+.|+||++.|+. .+.+|+ |+.+.|.+|+.++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~-er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHAN-SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCC-SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCC-CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3678899999964 467888 899999999999999999999999999999865
No 214
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.71 E-value=4.3e-05 Score=87.22 Aligned_cols=89 Identities=20% Similarity=0.141 Sum_probs=41.3
Q ss_pred EEEEEeEEEEEcCCcceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEecChhhhcCeEEE
Q 048718 512 EVAFKDLTITLKGKNKHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVASIQSYKRIIGF 591 (1118)
Q Consensus 512 ~l~~knLs~~~~~~~k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 591 (1118)
.+.+.+|...+. .+.+++++++.| +|+|++|+|||||++.|.|... ...|.+..++.......-.....+
T Consensus 17 ~v~~~~l~~~~~--~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~--~~~~~~~~~~~~~~~ti~~~~~~~ 86 (361)
T 2qag_A 17 YVGFANLPNQVH--RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDL--YPERVIPGAAEKIERTVQIEASTV 86 (361)
T ss_dssp ----CCHHHHHH--THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----------------CEEEEEEEE
T ss_pred eEEeccchHHhC--CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC--CCCCcccCCCcccCCceeEEEEEE
Confidence 355666666553 456888999887 9999999999999999988753 234444333322211000112344
Q ss_pred EcCCCCCCCCCCHHHHHHH
Q 048718 592 VPQDDIVHGNLTVEENLWF 610 (1118)
Q Consensus 592 V~Qd~~l~~~LTV~EnL~f 610 (1118)
..|.+.....+++.|+.-+
T Consensus 87 ~~~~~~~~~~l~i~DTpG~ 105 (361)
T 2qag_A 87 EIEERGVKLRLTVVDTPGY 105 (361)
T ss_dssp C----CEEEEEEEEC----
T ss_pred EeecCCcccceEEEEeccc
Confidence 4444333334555555544
No 215
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.70 E-value=0.00056 Score=72.99 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=26.6
Q ss_pred eeeeEEEEe---CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 530 MRSVTGKLS---PGRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 530 L~nVSl~I~---~GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
|.++++.+. +|.+++|.|++||||||+++.|+..+.
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 344444444 899999999999999999999999875
No 216
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.66 E-value=0.00038 Score=79.02 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=30.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCE
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGK 578 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~ 578 (1118)
++.+++|+|++|||||||+|.|+|... +..|+|.+.+.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~--~~~~~v~V~~~ 110 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLT--ERGHKLSVLAV 110 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhh--hcCCeEEEEee
Confidence 578999999999999999999999765 34566655543
No 217
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.66 E-value=0.03 Score=63.81 Aligned_cols=28 Identities=32% Similarity=0.547 Sum_probs=25.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 048718 536 KLSPGRVSAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 536 ~I~~GEi~aIlGpnGSGKSTLLkiLaGl 563 (1118)
=+++|+++.|.|++|+|||||...++..
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999888754
No 218
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.61 E-value=0.0029 Score=68.41 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
++.-+.|.||+|+|||||++.|+....
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 455689999999999999999998653
No 219
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.58 E-value=0.00046 Score=72.01 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=32.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcee--EEEECCE
Q 048718 538 SPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSG--TILVNGK 578 (1118)
Q Consensus 538 ~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG--~I~inG~ 578 (1118)
++|.+++|+|++||||||+.+.|++.+. +..| .+.++|.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~--~~~g~~~~~~~~d 63 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV--RDRRVHAYRLDGD 63 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH--HHHCCCEEEECHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc--cccCCcEEEECCh
Confidence 5789999999999999999999999875 3466 7777653
No 220
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.58 E-value=0.0022 Score=65.82 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 048718 541 RVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 541 Ei~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
..+.|.||+|+|||||++.|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999999999865
No 221
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.56 E-value=0.0011 Score=69.24 Aligned_cols=58 Identities=22% Similarity=0.213 Sum_probs=40.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC-CCCceeEEEE--------CCEecCh----hhhcCeEEEEcCCC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRVP-GCIMSGTILV--------NGKVASI----QSYKRIIGFVPQDD 596 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~~-~~~~sG~I~i--------nG~~~~~----~~~r~~IgyV~Qd~ 596 (1118)
.+.+++|+|||||||||++++|++.+. +.++.|+|.. +|.++.. ..+++.+++++|++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 357899999999999999999998652 1145677765 5554321 23455677777753
No 222
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.53 E-value=0.0025 Score=63.91 Aligned_cols=27 Identities=41% Similarity=0.615 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 538 SPGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 538 ~~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999999999864
No 223
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.52 E-value=0.0085 Score=63.38 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
.++|+|++|+|||||++.|.|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 478999999999999999999764
No 224
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.49 E-value=0.0014 Score=66.32 Aligned_cols=28 Identities=39% Similarity=0.366 Sum_probs=25.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 538 SPGRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 538 ~~GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
++|++++|+|++||||||+++.|++.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999999999763
No 225
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.47 E-value=0.0022 Score=65.36 Aligned_cols=35 Identities=31% Similarity=0.332 Sum_probs=20.9
Q ss_pred eeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 048718 528 HLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 528 ~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl 563 (1118)
.+|+++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4788899888777 5689999999999999999974
No 226
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.40 E-value=0.011 Score=66.75 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
+..-+.|.||+|+|||||+++|+...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 45578999999999999999999865
No 227
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.39 E-value=0.0012 Score=68.43 Aligned_cols=29 Identities=31% Similarity=0.499 Sum_probs=26.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 537 LSPGRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 537 I~~GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999999999998764
No 228
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.37 E-value=0.0044 Score=66.26 Aligned_cols=52 Identities=21% Similarity=0.201 Sum_probs=39.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEc---------CCcHHHHhccCcEEEE
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVH---------QPSYALFRMFDDLILL 727 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtH---------q~~~~i~~~~D~vivL 727 (1118)
+++++++||--- |+. ++++.++.++..|.+||++-| .....+..++|.|.-|
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el 149 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKL 149 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEEC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeec
Confidence 589999999964 654 355566777767999999999 4556677788888776
No 229
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.37 E-value=0.018 Score=68.17 Aligned_cols=33 Identities=24% Similarity=0.149 Sum_probs=26.3
Q ss_pred eeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 048718 530 MRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKG 562 (1118)
Q Consensus 530 L~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaG 562 (1118)
|+.+.+-+.+|+++.|.|++|+|||||+.-|+-
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 333333478999999999999999999877764
No 230
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.36 E-value=0.0018 Score=67.77 Aligned_cols=31 Identities=19% Similarity=0.437 Sum_probs=24.5
Q ss_pred eeEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 048718 532 SVTGKLSPGRVSAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 532 nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl 563 (1118)
+.++.+.+ .+++|+|||||||||+|.+|.-.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHHHH
Confidence 34455555 49999999999999999998643
No 231
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.34 E-value=0.0015 Score=67.94 Aligned_cols=45 Identities=9% Similarity=0.072 Sum_probs=30.4
Q ss_pred hCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHCCCE-EEEEEcCCc
Q 048718 670 MEPSLLILDEPTSGL-DSSSSQLLLRALRREALEGVN-ICTVVHQPS 714 (1118)
Q Consensus 670 ~~P~lLlLDEPTsGL-D~~sa~~i~~~Lr~la~~G~T-IIvvtHq~~ 714 (1118)
.++.+|++||.-.-- +......+.+.+......+.. +|++++...
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 568999999965432 233367788888777666655 777777543
No 232
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.33 E-value=0.0016 Score=66.48 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=26.4
Q ss_pred eeEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 048718 532 SVTGKLSPGRVSAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 532 nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl 563 (1118)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56778888999999999999999999999976
No 233
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.29 E-value=0.0045 Score=72.60 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=29.0
Q ss_pred eeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 048718 529 LMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 529 IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl 563 (1118)
-|+.+.+-+.+|+++.|.|++|+|||||+--|+..
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 45555556799999999999999999998877653
No 234
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.26 E-value=0.013 Score=65.20 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=25.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 048718 535 GKLSPGRVSAVMGPSGAGKTTFLSALKG 562 (1118)
Q Consensus 535 l~I~~GEi~aIlGpnGSGKSTLLkiLaG 562 (1118)
+-+++|+++.|.||+|+|||||+..++.
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999988875
No 235
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.09 E-value=0.0024 Score=65.66 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 048718 542 VSAVMGPSGAGKTTFLSALKG 562 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaG 562 (1118)
+++|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 236
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.07 E-value=0.0011 Score=68.07 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=31.1
Q ss_pred ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 048718 527 KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 527 k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl 563 (1118)
..+|+++++..++++ ++|+|++|+|||||++.+.+-
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 458888988888875 689999999999999999874
No 237
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.97 E-value=0.039 Score=61.62 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
+..-+.|.||+|+|||||++.|+...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 45678899999999999999999865
No 238
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.90 E-value=0.0063 Score=60.92 Aligned_cols=22 Identities=36% Similarity=0.619 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl 563 (1118)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 239
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.88 E-value=0.0017 Score=69.82 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=30.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCE
Q 048718 538 SPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGK 578 (1118)
Q Consensus 538 ~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~ 578 (1118)
+++.++.|+|+|||||||+.+.|+..+. .+.+.++|.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~----~~~~~~~~D 66 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ----GNIVIIDGD 66 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT----TCCEEECGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC----CCcEEEecH
Confidence 5678999999999999999999998764 245666663
No 240
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.86 E-value=0.0059 Score=69.54 Aligned_cols=31 Identities=26% Similarity=0.485 Sum_probs=26.6
Q ss_pred eeeeEEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 048718 530 MRSVTGKLSPGRVSAVMGPSGAGKTTFLSALK 561 (1118)
Q Consensus 530 L~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLa 561 (1118)
+++..+++.+| +++|.|+|||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 36677777675 99999999999999999986
No 241
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.84 E-value=0.0044 Score=62.89 Aligned_cols=28 Identities=32% Similarity=0.415 Sum_probs=25.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 538 SPGRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 538 ~~GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
.+|.+++|+|++||||||+.+.|++.+.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999998764
No 242
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.83 E-value=0.071 Score=60.97 Aligned_cols=27 Identities=33% Similarity=0.652 Sum_probs=24.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHc
Q 048718 536 KLSPGRVSAVMGPSGAGKTTFLSALKG 562 (1118)
Q Consensus 536 ~I~~GEi~aIlGpnGSGKSTLLkiLaG 562 (1118)
-+++|+++.|.||+|+|||||...++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 578999999999999999999987764
No 243
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.83 E-value=0.0019 Score=75.39 Aligned_cols=46 Identities=22% Similarity=0.074 Sum_probs=38.2
Q ss_pred eeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECCEec
Q 048718 531 RSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNGKVA 580 (1118)
Q Consensus 531 ~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~ 580 (1118)
+++++. +|++++|+|++|+||||++..|++.+. ...|.|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~--~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEeeccc
Confidence 567777 899999999999999999999999986 3567787766543
No 244
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.81 E-value=0.0044 Score=62.48 Aligned_cols=26 Identities=38% Similarity=0.560 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 048718 538 SPGRVSAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 538 ~~GEi~aIlGpnGSGKSTLLkiLaGl 563 (1118)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999864
No 245
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.79 E-value=0.022 Score=60.32 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 540 GRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 540 GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
..-+.|.||+|+|||||++.|+...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4457899999999999999999854
No 246
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.77 E-value=0.0034 Score=69.58 Aligned_cols=52 Identities=15% Similarity=0.098 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHHC-CC--EEEEEEcC
Q 048718 654 ISGGQRKRVNVGLEMV--MEPSLLILDEPTSGLDSSS-SQLLLRALRREALE-GV--NICTVVHQ 712 (1118)
Q Consensus 654 LSGGERQRVsIArALl--~~P~lLlLDEPTsGLD~~s-a~~i~~~Lr~la~~-G~--TIIvvtHq 712 (1118)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.+.++++. |. .+.+++|+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~ 158 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET 158 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCC
Confidence 898886 5666666 68999998 7888876 66777778777653 43 34444444
No 247
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.72 E-value=0.0041 Score=64.00 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 540 GRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 540 GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
..+++|+|++|||||||.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999864
No 248
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.71 E-value=0.0072 Score=67.40 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.+..+.|.||+|+|||||++.++...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 46689999999999999999999765
No 249
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.69 E-value=0.0054 Score=60.75 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 250
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.68 E-value=0.0042 Score=71.85 Aligned_cols=42 Identities=17% Similarity=0.228 Sum_probs=31.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCC---------CCCceeEEEECC
Q 048718 536 KLSPGRVSAVMGPSGAGKTTFLSALKGRVP---------GCIMSGTILVNG 577 (1118)
Q Consensus 536 ~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~---------~~~~sG~I~inG 577 (1118)
.+..|..++|+|+||+|||||++.|+|... -.+..|.|.+.|
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 446788899999999999999999999721 014567777765
No 251
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.63 E-value=0.0013 Score=75.11 Aligned_cols=38 Identities=16% Similarity=0.341 Sum_probs=33.5
Q ss_pred eeeeeeEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCCC
Q 048718 528 HLMRSVTGKLSPGRV--SAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 528 ~IL~nVSl~I~~GEi--~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
.+|+.+++.+++|++ ++|+|++||||||+.++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 467788888889988 99999999999999999998753
No 252
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.61 E-value=0.0058 Score=60.41 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998764
No 253
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.59 E-value=0.0065 Score=60.79 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=23.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 540 GRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 540 GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999998764
No 254
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.57 E-value=0.0014 Score=73.46 Aligned_cols=39 Identities=26% Similarity=0.477 Sum_probs=33.9
Q ss_pred ceeeeeeEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCCC
Q 048718 527 KHLMRSVTGKLSPGRV--SAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 527 k~IL~nVSl~I~~GEi--~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
..+++.++..++.|++ +.+.||+|+||||++++|++.+.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 4577777777888988 99999999999999999999764
No 255
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.48 E-value=0.0015 Score=72.68 Aligned_cols=42 Identities=24% Similarity=0.111 Sum_probs=33.0
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECC
Q 048718 533 VTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNG 577 (1118)
Q Consensus 533 VSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG 577 (1118)
+++..+ |++++++|++|+||||++..|++.+. ...|.|.+.+
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~--~~g~~v~l~~ 133 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK--KKGFKVGLVG 133 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH--HTTCCEEEEE
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEe
Confidence 666655 99999999999999999999999875 2345555543
No 256
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.34 E-value=0.0079 Score=63.74 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=24.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 538 SPGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 538 ~~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.+|.+++|+|++||||||+.+.|++.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 578999999999999999999999844
No 257
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.34 E-value=0.0055 Score=65.48 Aligned_cols=23 Identities=35% Similarity=0.667 Sum_probs=21.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCCC
Q 048718 543 SAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 543 ~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
+.|.||||+|||||+++|++...
T Consensus 48 vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHcC
Confidence 88999999999999999998753
No 258
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.31 E-value=0.0089 Score=60.13 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
+|.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998754
No 259
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.31 E-value=0.0077 Score=60.87 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=23.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 538 SPGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 538 ~~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998643
No 260
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.31 E-value=0.035 Score=74.36 Aligned_cols=29 Identities=31% Similarity=0.529 Sum_probs=26.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 536 KLSPGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 536 ~I~~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
=+.+|+++.|.||+|+|||||+..++...
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 48999999999999999999999998754
No 261
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.22 E-value=0.0082 Score=60.51 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999964
No 262
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.14 E-value=0.01 Score=58.28 Aligned_cols=19 Identities=37% Similarity=0.616 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 048718 542 VSAVMGPSGAGKTTFLSAL 560 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiL 560 (1118)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 263
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.14 E-value=0.0098 Score=61.09 Aligned_cols=37 Identities=32% Similarity=0.271 Sum_probs=27.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCC-CCceeEEEECC
Q 048718 541 RVSAVMGPSGAGKTTFLSALKGRVPG-CIMSGTILVNG 577 (1118)
Q Consensus 541 Ei~aIlGpnGSGKSTLLkiLaGl~~~-~~~sG~I~inG 577 (1118)
.+++|+|+||||||||++.|.+.+.. ...-|.|..++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 58999999999999999999987531 11235555544
No 264
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.01 E-value=0.011 Score=63.72 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 048718 541 RVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 541 Ei~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.+++|+||||||||||.+.|++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 378999999999999999999864
No 265
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.00 E-value=0.013 Score=61.06 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKG 562 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaG 562 (1118)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999998
No 266
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.99 E-value=0.012 Score=60.10 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999876
No 267
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.99 E-value=0.012 Score=64.98 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=28.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEECC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVNG 577 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~inG 577 (1118)
.|.++.|.||||||||||.+.|+...+ .|.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~----~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ----GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT----TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC----CCeEEEec
Confidence 577999999999999999999987553 24566654
No 268
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.93 E-value=0.014 Score=59.57 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 578999999999999999999998654
No 269
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.89 E-value=0.013 Score=59.46 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998653
No 270
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.89 E-value=0.014 Score=58.88 Aligned_cols=26 Identities=31% Similarity=0.211 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998654
No 271
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.88 E-value=0.013 Score=63.09 Aligned_cols=25 Identities=36% Similarity=0.545 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 540 GRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 540 GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999654
No 272
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=94.88 E-value=0.036 Score=64.82 Aligned_cols=54 Identities=9% Similarity=0.033 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCc
Q 048718 657 GQRKRVNVGLEMVMEPSLLILDEPT-SGLDSSSSQLLLRALRREALEGVNICTVVHQPS 714 (1118)
Q Consensus 657 GERQRVsIArALl~~P~lLlLDEPT-sGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~ 714 (1118)
.+.+....+...+.+++++|+.... .++.... ..+.+.|+ +.++.+|++.+..+
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~---~~~~pvilV~NK~D 142 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNKLD 142 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHT---TCCSCEEEEEECC-
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHH---HcCCCEEEEEECcc
Confidence 3666677777788888887665444 4555543 44555443 35788888887654
No 273
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.87 E-value=0.015 Score=57.92 Aligned_cols=22 Identities=23% Similarity=0.505 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 048718 541 RVSAVMGPSGAGKTTFLSALKG 562 (1118)
Q Consensus 541 Ei~aIlGpnGSGKSTLLkiLaG 562 (1118)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 274
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.79 E-value=0.013 Score=58.98 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 048718 538 SPGRVSAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 538 ~~GEi~aIlGpnGSGKSTLLkiLaGl 563 (1118)
..+.++.|.|++||||||+.+.|+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999854
No 275
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.68 E-value=0.061 Score=60.88 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
+..-+.|.||+|+|||||.+.|+...
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 44457889999999999999999864
No 276
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.67 E-value=0.13 Score=59.54 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHHcCCC
Q 048718 543 SAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 543 ~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
+.+.||+|+|||+|.++|++...
T Consensus 185 vLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHHHT
T ss_pred eEEeCCCCCCHHHHHHHHHHhhC
Confidence 77899999999999999999653
No 277
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.65 E-value=0.016 Score=59.42 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=24.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 538 SPGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 538 ~~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
..|.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998653
No 278
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.61 E-value=0.016 Score=58.64 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 538 SPGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 538 ~~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.++.+++|+|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998644
No 279
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.59 E-value=0.013 Score=67.04 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=28.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeEEEEC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRVPGCIMSGTILVN 576 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~~~~~~sG~I~in 576 (1118)
.+..++|+|++|||||||++.|++... ...+.|.+-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~--~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY--MQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH--HCCCEEEEE
Confidence 567899999999999999999998754 244566553
No 280
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.57 E-value=0.0084 Score=61.73 Aligned_cols=24 Identities=38% Similarity=0.595 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 281
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.56 E-value=0.019 Score=58.50 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 048718 540 GRVSAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 540 GEi~aIlGpnGSGKSTLLkiLaGl 563 (1118)
..+++|.|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 468999999999999999999985
No 282
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.54 E-value=0.017 Score=60.04 Aligned_cols=24 Identities=42% Similarity=0.686 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
.+.|+||||||||||++.|....+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 478999999999999999976654
No 283
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.54 E-value=0.02 Score=57.54 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl 563 (1118)
++.+++|.|++||||||+.+.|+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999864
No 284
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.51 E-value=0.018 Score=57.82 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999754
No 285
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.50 E-value=0.17 Score=57.70 Aligned_cols=26 Identities=35% Similarity=0.601 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
++.-+.|.||+|+|||||.+.|+...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 45678999999999999999998765
No 286
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.46 E-value=0.0063 Score=61.84 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=24.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 537 LSPGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 537 I~~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
++.+.+++|.|++||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467799999999999999999998754
No 287
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.46 E-value=0.019 Score=59.03 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=24.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 538 SPGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 538 ~~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
++|.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999998654
No 288
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.44 E-value=0.018 Score=57.76 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
No 289
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.36 E-value=0.53 Score=63.32 Aligned_cols=35 Identities=29% Similarity=0.476 Sum_probs=27.9
Q ss_pred eeeeeE--EEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 048718 529 LMRSVT--GKLSPGRVSAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 529 IL~nVS--l~I~~GEi~aIlGpnGSGKSTLLkiLaGl 563 (1118)
-|+.+- +=+++|+++.|.||+|+|||||...++..
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 455543 24789999999999999999998877653
No 290
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.33 E-value=0.027 Score=63.51 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=20.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHH
Q 048718 536 KLSPGRVSAVMGPSGAGKTTFLSALK 561 (1118)
Q Consensus 536 ~I~~GEi~aIlGpnGSGKSTLLkiLa 561 (1118)
=+.+| ++.|.||+|+|||||+--++
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~ 49 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMV 49 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHH
Confidence 35789 99999999999999955443
No 291
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.23 E-value=0.058 Score=56.15 Aligned_cols=52 Identities=13% Similarity=0.218 Sum_probs=37.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcC---------CcHHHHhccCcEEEE
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQ---------PSYALFRMFDDLILL 727 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq---------~~~~i~~~~D~vivL 727 (1118)
+.+++++||--- ||+. +++.|+.++..|+.||++-++ ....+..++|.|.-|
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el 141 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKI 141 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEEC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEee
Confidence 579999999644 6643 355677777779999999884 445666778877665
No 292
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.16 E-value=0.026 Score=58.85 Aligned_cols=27 Identities=37% Similarity=0.511 Sum_probs=23.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 538 SPGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 538 ~~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
++|-+++|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 357789999999999999999998754
No 293
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.11 E-value=0.021 Score=61.84 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999975
No 294
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.06 E-value=0.05 Score=54.95 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl 563 (1118)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999766654
No 295
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.05 E-value=0.025 Score=54.99 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 296
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.01 E-value=0.02 Score=57.44 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=18.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999998654
No 297
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.97 E-value=0.028 Score=54.69 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999999743
No 298
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.94 E-value=0.027 Score=54.39 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998653
No 299
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.94 E-value=0.026 Score=56.71 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.++|+|++|+|||||++.|.+..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
No 300
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.94 E-value=0.028 Score=55.03 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47899999999999999999864
No 301
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.89 E-value=0.03 Score=56.69 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 302
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.89 E-value=0.12 Score=70.38 Aligned_cols=35 Identities=29% Similarity=0.476 Sum_probs=28.1
Q ss_pred eeeeeE--EEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 048718 529 LMRSVT--GKLSPGRVSAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 529 IL~nVS--l~I~~GEi~aIlGpnGSGKSTLLkiLaGl 563 (1118)
-|+.+- +=+++|+++.|.||+|+|||||+..++..
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~ 406 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 344443 24789999999999999999998887754
No 303
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.84 E-value=0.028 Score=54.28 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998754
No 304
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.83 E-value=0.029 Score=57.24 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999999854
No 305
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.82 E-value=0.026 Score=54.27 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.++|+|++|+|||||++.|.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998764
No 306
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.81 E-value=0.37 Score=56.40 Aligned_cols=26 Identities=31% Similarity=0.586 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
+-.=+.+.||+|+|||+|.++|++..
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 33447789999999999999999865
No 307
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.80 E-value=0.029 Score=58.80 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=22.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 538 SPGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 538 ~~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.++.+++|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998644
No 308
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.80 E-value=0.024 Score=55.19 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 37899999999999999998764
No 309
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.79 E-value=0.03 Score=54.09 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 310
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.74 E-value=0.031 Score=54.39 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999865
No 311
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.72 E-value=0.032 Score=54.41 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 048718 543 SAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 543 ~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
++|+|++|+|||||++.+.+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999998754
No 312
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.72 E-value=0.078 Score=62.90 Aligned_cols=27 Identities=33% Similarity=0.533 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 538 SPGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 538 ~~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.+..-+.|.||+|+|||+|+++|+...
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 445568999999999999999998754
No 313
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.70 E-value=0.033 Score=57.09 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 048718 541 RVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 541 Ei~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.+++|+|++|||||||+..|+..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 379999999999999999998865
No 314
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.68 E-value=0.034 Score=57.55 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997643
No 315
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.68 E-value=0.031 Score=54.20 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998764
No 316
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.67 E-value=0.032 Score=54.40 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999753
No 317
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.65 E-value=0.038 Score=56.69 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.+-+++|+|++||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998643
No 318
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.62 E-value=0.03 Score=54.51 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999999764
No 319
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.62 E-value=0.036 Score=55.79 Aligned_cols=23 Identities=35% Similarity=0.357 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 320
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.61 E-value=0.033 Score=54.02 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998753
No 321
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.61 E-value=0.03 Score=55.09 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 322
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.60 E-value=0.056 Score=60.66 Aligned_cols=36 Identities=25% Similarity=0.244 Sum_probs=31.3
Q ss_pred ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 048718 527 KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 527 k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl 563 (1118)
...+|+..+.+ .|.-++|+|+||+|||||...|.+.
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 35778877777 7999999999999999999999874
No 323
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.60 E-value=0.033 Score=54.76 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 324
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.57 E-value=0.034 Score=54.74 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998754
No 325
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=93.52 E-value=0.048 Score=62.41 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=28.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC---------CCCceeEEEECC
Q 048718 540 GRVSAVMGPSGAGKTTFLSALKGRVP---------GCIMSGTILVNG 577 (1118)
Q Consensus 540 GEi~aIlGpnGSGKSTLLkiLaGl~~---------~~~~sG~I~inG 577 (1118)
|-.++|+|.+|+|||||++.|+|... -.+..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998431 114567777765
No 326
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.51 E-value=0.33 Score=56.62 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 048718 541 RVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 541 Ei~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.=+.+.||+|+|||+|.++||+..
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 347899999999999999999865
No 327
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.49 E-value=0.04 Score=54.74 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 048718 541 RVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 541 Ei~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
++++|.|++||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998753
No 328
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.48 E-value=0.042 Score=59.29 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 048718 538 SPGRVSAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 538 ~~GEi~aIlGpnGSGKSTLLkiLaGl 563 (1118)
.++.++.|.|++||||||+.+.|+..
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999875
No 329
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.45 E-value=0.033 Score=54.74 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998863
No 330
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.45 E-value=0.032 Score=56.02 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999863
No 331
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.45 E-value=0.034 Score=55.10 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 048718 541 RVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 541 Ei~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998754
No 332
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.44 E-value=0.039 Score=57.17 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997644
No 333
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.44 E-value=0.036 Score=55.27 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999864
No 334
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.43 E-value=0.036 Score=59.40 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
.++|+|++|+|||||++.|.|...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 579999999999999999999753
No 335
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.43 E-value=0.31 Score=52.52 Aligned_cols=53 Identities=13% Similarity=0.145 Sum_probs=43.0
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcC---------CcHHHHhccCcEEEEe
Q 048718 670 MEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQ---------PSYALFRMFDDLILLA 728 (1118)
Q Consensus 670 ~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq---------~~~~i~~~~D~vivL~ 728 (1118)
.+.+++++||----.| +.+.++.++..|+.||++-++ ....+..++|.|.-|.
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999877654 555566666689999999999 7778889999998873
No 336
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.42 E-value=0.041 Score=55.22 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 540 GRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 540 GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
..+++|.|++||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998643
No 337
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.41 E-value=0.043 Score=56.19 Aligned_cols=26 Identities=35% Similarity=0.295 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
...+++|.|++||||||+.+.|+..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34579999999999999999998644
No 338
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.39 E-value=0.037 Score=54.89 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999999754
No 339
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.37 E-value=0.033 Score=58.09 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.+.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999998654
No 340
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.36 E-value=0.038 Score=53.59 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl 563 (1118)
-++|+|++|+|||||++.|.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 341
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.35 E-value=0.047 Score=53.71 Aligned_cols=26 Identities=35% Similarity=0.472 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
+.-.++|+|++|+|||||++.|.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34578999999999999999998753
No 342
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.33 E-value=0.044 Score=54.12 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998743
No 343
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.30 E-value=0.035 Score=55.38 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58899999999999999999864
No 344
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.28 E-value=0.035 Score=55.90 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 048718 541 RVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 541 Ei~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998754
No 345
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.25 E-value=0.044 Score=53.92 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 47899999999999999998753
No 346
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.23 E-value=0.04 Score=54.69 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999753
No 347
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.22 E-value=0.033 Score=55.92 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl 563 (1118)
.++|+|++|+|||||++.|.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 348
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.21 E-value=0.037 Score=55.07 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 048718 543 SAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 543 ~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999864
No 349
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.20 E-value=0.042 Score=53.61 Aligned_cols=23 Identities=39% Similarity=0.458 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 048718 541 RVSAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 541 Ei~aIlGpnGSGKSTLLkiLaGl 563 (1118)
=.++|+|++|+|||||++.|.+-
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999764
No 350
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.19 E-value=0.48 Score=55.58 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
++.+++++|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999997653
No 351
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.10 E-value=0.049 Score=54.37 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
-++|+|++|+|||||++.|.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 478999999999999999999764
No 352
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.10 E-value=0.043 Score=55.17 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
No 353
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.09 E-value=0.23 Score=58.41 Aligned_cols=28 Identities=32% Similarity=0.516 Sum_probs=23.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 538 SPGRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 538 ~~GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
++-.=+.+.||+|+|||+|.++|++...
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence 3445588999999999999999998653
No 354
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.05 E-value=0.045 Score=53.07 Aligned_cols=21 Identities=43% Similarity=0.433 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 048718 543 SAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 543 ~aIlGpnGSGKSTLLkiLaGl 563 (1118)
++|+|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999763
No 355
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.05 E-value=0.053 Score=57.98 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
++-+++|+||+||||||+.+.|+..+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998543
No 356
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.04 E-value=0.048 Score=59.65 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 357
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.99 E-value=0.047 Score=53.57 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999999764
No 358
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.98 E-value=0.043 Score=53.85 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998653
No 359
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.98 E-value=0.046 Score=53.98 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48899999999999999999754
No 360
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.95 E-value=0.047 Score=53.80 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
No 361
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.88 E-value=0.05 Score=53.69 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998764
No 362
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.83 E-value=0.23 Score=52.85 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=38.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEc---------CCcHHHHhccCcEEEE
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVH---------QPSYALFRMFDDLILL 727 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtH---------q~~~~i~~~~D~vivL 727 (1118)
+.+++++||--- ||.. +++.|+.++..|+.||++-+ .....+..++|.|.-|
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel 161 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKL 161 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEEC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEee
Confidence 579999999865 6643 33667777777999999999 5556666777777665
No 363
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.81 E-value=0.031 Score=55.44 Aligned_cols=23 Identities=39% Similarity=0.436 Sum_probs=20.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 048718 540 GRVSAVMGPSGAGKTTFLSALKG 562 (1118)
Q Consensus 540 GEi~aIlGpnGSGKSTLLkiLaG 562 (1118)
.-.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999874
No 364
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.81 E-value=0.05 Score=54.44 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.++|+|++|+|||||++.|.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998764
No 365
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.74 E-value=0.052 Score=54.88 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
No 366
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.74 E-value=0.052 Score=54.99 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998864
No 367
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=92.68 E-value=0.056 Score=59.93 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.++|+|++|+|||||++.|.|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 59999999999999999999864
No 368
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.66 E-value=0.058 Score=57.72 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 048718 541 RVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 541 Ei~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998854
No 369
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.62 E-value=0.064 Score=57.00 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 538 SPGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 538 ~~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
++..++.|+||+||||+|..+.|+-.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998654
No 370
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.62 E-value=0.054 Score=55.67 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999865
No 371
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.61 E-value=0.051 Score=53.99 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 372
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=92.60 E-value=0.058 Score=59.81 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.++|+|++|+|||||++.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999864
No 373
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.59 E-value=0.052 Score=54.54 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl 563 (1118)
-++|+|++|+|||||++.|.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999874
No 374
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.57 E-value=0.07 Score=52.59 Aligned_cols=26 Identities=27% Similarity=0.538 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.+..+.|.||+|+|||||++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34678899999999999999998765
No 375
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=92.56 E-value=0.046 Score=59.29 Aligned_cols=23 Identities=35% Similarity=0.431 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.|..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38899999999999999998764
No 376
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.56 E-value=0.057 Score=54.12 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999999854
No 377
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.51 E-value=0.058 Score=54.14 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998764
No 378
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.49 E-value=0.064 Score=56.33 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
+++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998643
No 379
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.47 E-value=0.059 Score=56.24 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
+|-.++|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999998754
No 380
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.44 E-value=0.058 Score=53.78 Aligned_cols=25 Identities=32% Similarity=0.403 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 540 GRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 540 GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.=-++|+|++|+|||||++.+.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998754
No 381
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.42 E-value=0.061 Score=53.37 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
No 382
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=92.42 E-value=0.057 Score=57.64 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 383
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.41 E-value=0.062 Score=53.15 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl 563 (1118)
-++|+|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 384
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.33 E-value=0.058 Score=54.00 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 385
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.31 E-value=0.067 Score=54.22 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999864
No 386
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.29 E-value=0.071 Score=57.99 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
+...+.|.||+|+|||||+++|++...
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 456899999999999999999999764
No 387
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.26 E-value=0.072 Score=55.35 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl 563 (1118)
..-+++|.|++||||||+.+.|+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999864
No 388
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.26 E-value=0.06 Score=54.36 Aligned_cols=23 Identities=17% Similarity=0.416 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998764
No 389
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=92.21 E-value=0.061 Score=58.15 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.++|+|.+|+|||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999974
No 390
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.21 E-value=0.068 Score=53.65 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998643
No 391
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.19 E-value=0.051 Score=55.48 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl 563 (1118)
.++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5799999999999999999764
No 392
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=92.17 E-value=0.066 Score=58.65 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.++|+|++|+|||||++.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
No 393
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.16 E-value=0.076 Score=57.85 Aligned_cols=23 Identities=22% Similarity=0.522 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 048718 541 RVSAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 541 Ei~aIlGpnGSGKSTLLkiLaGl 563 (1118)
.++.|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999873
No 394
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.14 E-value=0.062 Score=54.67 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 57899999999999999999864
No 395
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.11 E-value=0.064 Score=53.10 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl 563 (1118)
.++|+|++|+|||||++.+.+-
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999853
No 396
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.08 E-value=0.071 Score=55.35 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998643
No 397
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.08 E-value=0.071 Score=53.25 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48899999999999999998764
No 398
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=92.07 E-value=0.064 Score=61.40 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 048718 543 SAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 543 ~aIlGpnGSGKSTLLkiLaGl 563 (1118)
++|+|++|+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999986
No 399
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.07 E-value=0.069 Score=55.08 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 048718 541 RVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 541 Ei~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-.++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998753
No 400
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.07 E-value=0.065 Score=57.54 Aligned_cols=49 Identities=18% Similarity=0.273 Sum_probs=29.9
Q ss_pred HHHHHhhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHHCCCEEEEEEcC
Q 048718 664 VGLEMVMEPSLLILDEPTSG-LDSSSSQLLLRALRREALEGVNICTVVHQ 712 (1118)
Q Consensus 664 IArALl~~P~lLlLDEPTsG-LD~~sa~~i~~~Lr~la~~G~TIIvvtHq 712 (1118)
+..+|..+|+++++||+-.- .+.......++.+..+...|..++.++|-
T Consensus 77 l~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nl 126 (228)
T 2r8r_A 77 LDALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNV 126 (228)
T ss_dssp HHHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEG
T ss_pred HHHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccc
Confidence 33345578999999997642 33222223333344445678889888884
No 401
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.06 E-value=0.072 Score=52.57 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998743
No 402
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.03 E-value=0.12 Score=58.55 Aligned_cols=27 Identities=26% Similarity=0.545 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
++.+++|+||+|||||||...|+..+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 567999999999999999999998764
No 403
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.02 E-value=0.065 Score=54.54 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 404
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.01 E-value=0.073 Score=53.61 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999754
No 405
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.99 E-value=0.067 Score=53.88 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47899999999999999999754
No 406
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.98 E-value=0.066 Score=57.25 Aligned_cols=29 Identities=34% Similarity=0.503 Sum_probs=22.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 537 LSPGRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 537 I~~GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
..+|.+++|.|++||||||+.+.|+..+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999987653
No 407
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.97 E-value=0.087 Score=55.58 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.+..+.|+|++||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998654
No 408
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.96 E-value=0.067 Score=54.13 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998753
No 409
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.94 E-value=0.074 Score=54.12 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
No 410
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.93 E-value=0.075 Score=53.47 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 411
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.93 E-value=0.073 Score=58.27 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 048718 540 GRVSAVMGPSGAGKTTFLSALKG 562 (1118)
Q Consensus 540 GEi~aIlGpnGSGKSTLLkiLaG 562 (1118)
.-+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
No 412
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=91.92 E-value=0.041 Score=56.71 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 413
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=91.89 E-value=0.076 Score=54.07 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl 563 (1118)
-++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999974
No 414
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.88 E-value=0.075 Score=53.24 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.++|+|++|+|||||++.|.+-.
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~~ 40 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMNE 40 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999643
No 415
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.87 E-value=0.077 Score=53.48 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48899999999999999999764
No 416
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.87 E-value=0.072 Score=53.49 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 048718 541 RVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 541 Ei~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-.++|+|++|+|||||++.|.+..
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999998754
No 417
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.86 E-value=0.078 Score=53.61 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48899999999999999998753
No 418
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.84 E-value=0.075 Score=54.21 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
No 419
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.83 E-value=0.13 Score=54.23 Aligned_cols=36 Identities=28% Similarity=0.255 Sum_probs=28.9
Q ss_pred eeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 528 HLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 528 ~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
..++..-..+ .|..++|+||+|+|||||...|+...
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4566655554 68899999999999999999998754
No 420
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.80 E-value=0.084 Score=54.16 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999999754
No 421
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.80 E-value=0.11 Score=54.38 Aligned_cols=45 Identities=22% Similarity=0.261 Sum_probs=30.9
Q ss_pred hhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHHC-CCEEEEEEcCC
Q 048718 669 VMEPSLLILDEPTS----GLDSSSSQLLLRALRREALE-GVNICTVVHQP 713 (1118)
Q Consensus 669 l~~P~lLlLDEPTs----GLD~~sa~~i~~~Lr~la~~-G~TIIvvtHq~ 713 (1118)
-.+++++++|.-+. .-|.....+++..|+.++++ |.+++++.|..
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~ 182 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP 182 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEe
Confidence 35788999985432 11444556777778888754 99999998754
No 422
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.78 E-value=0.08 Score=53.78 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57999999999999999998754
No 423
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.76 E-value=0.059 Score=54.15 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998764
No 424
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=91.74 E-value=0.082 Score=57.14 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999854
No 425
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=91.71 E-value=0.077 Score=55.39 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl 563 (1118)
.++|+|++|+|||||++.|.+.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 426
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.69 E-value=0.09 Score=55.25 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
++.|+||+||||+|..+.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998654
No 427
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.68 E-value=0.07 Score=53.24 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999753
No 428
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=91.66 E-value=0.078 Score=57.74 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.++|+|.+|+|||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 429
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=91.65 E-value=0.072 Score=57.69 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.++|+|.+|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999975
No 430
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.64 E-value=0.068 Score=52.75 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
No 431
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=91.61 E-value=0.082 Score=53.65 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
-++|+|++|+|||||++.+.+...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 488999999999999999998654
No 432
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.50 E-value=0.094 Score=53.02 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
No 433
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.49 E-value=0.11 Score=54.83 Aligned_cols=28 Identities=36% Similarity=0.491 Sum_probs=24.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 538 SPGRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 538 ~~GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
.+|.+++|.|++||||||+++.|+..+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999987653
No 434
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.47 E-value=0.082 Score=54.11 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999854
No 435
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.45 E-value=0.088 Score=60.95 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 538 SPGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 538 ~~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
...+++.|+|++||||||+.+.|+..+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 457899999999999999999997643
No 436
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.43 E-value=0.082 Score=54.45 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999988653
No 437
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.41 E-value=0.09 Score=51.88 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 540 GRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 540 GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
+..+.|.||+|+|||||++.++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999998765
No 438
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.41 E-value=0.19 Score=52.05 Aligned_cols=35 Identities=17% Similarity=0.096 Sum_probs=27.8
Q ss_pred ceeeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 048718 527 KHLMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKG 562 (1118)
Q Consensus 527 k~IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaG 562 (1118)
+..||..-..+ .|.-++|.|+||+|||||...|..
T Consensus 4 ~~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 4 KQTWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp CEEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred cEEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34556555554 688999999999999999988875
No 439
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.38 E-value=0.054 Score=59.78 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=19.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
++-+++|.|++||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998743
No 440
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.34 E-value=0.096 Score=52.80 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 47899999999999999988753
No 441
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.23 E-value=0.064 Score=53.20 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=9.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl 563 (1118)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
No 442
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.21 E-value=0.098 Score=53.56 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 443
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.20 E-value=0.096 Score=54.07 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl 563 (1118)
-++|+|++|+|||||++.|.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4889999999999999999874
No 444
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.10 E-value=0.093 Score=54.15 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 445
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.09 E-value=0.25 Score=67.33 Aligned_cols=36 Identities=28% Similarity=0.464 Sum_probs=30.4
Q ss_pred eeeeeEE--EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 529 LMRSVTG--KLSPGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 529 IL~nVSl--~I~~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-|+.+.+ =+.+|+++.|.|++|+|||||+..++...
T Consensus 719 eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~ 756 (2050)
T 3cmu_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3566654 68999999999999999999999988754
No 446
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=91.03 E-value=0.12 Score=52.73 Aligned_cols=43 Identities=23% Similarity=0.271 Sum_probs=29.2
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCc
Q 048718 670 MEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPS 714 (1118)
Q Consensus 670 ~~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~ 714 (1118)
.++.+|++||.-. ||......+++.+... ..+..+|++++++.
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 3578999999765 7877777666655422 23566778887754
No 447
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=91.00 E-value=0.097 Score=53.32 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999999754
No 448
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=90.89 E-value=0.09 Score=54.42 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=22.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 540 GRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 540 GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999999865
No 449
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.79 E-value=0.094 Score=53.18 Aligned_cols=22 Identities=41% Similarity=0.383 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl 563 (1118)
-++|+|++|+|||||++.+.+-
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999754
No 450
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=90.75 E-value=0.11 Score=55.94 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999865
No 451
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.71 E-value=0.11 Score=52.21 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 452
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.64 E-value=0.13 Score=55.38 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
+|.+++|.|++||||||+++.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999987653
No 453
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=90.60 E-value=0.11 Score=56.02 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.++|+|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 454
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.59 E-value=0.14 Score=54.19 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=23.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 540 GRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 540 GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
|.+++|-|+.||||||+.+.|+..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999999998764
No 455
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.48 E-value=0.13 Score=58.31 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=22.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 541 RVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 541 Ei~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4899999999999999999998653
No 456
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.48 E-value=0.094 Score=56.35 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=24.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 538 SPGRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 538 ~~GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
+++.+++|.|+.||||||+.+.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4678999999999999999999988764
No 457
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=90.40 E-value=0.13 Score=53.35 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999864
No 458
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=90.39 E-value=0.061 Score=55.25 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988643
No 459
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.30 E-value=0.13 Score=53.19 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.++|+|.+|+|||||++-+++..
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 68899999999999999988643
No 460
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=90.19 E-value=0.15 Score=54.14 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=25.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 538 SPGRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 538 ~~GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
.+|.++.|.|++||||||+++.|+..+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3689999999999999999999998765
No 461
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=90.19 E-value=0.13 Score=52.59 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 47899999999999999998753
No 462
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=90.19 E-value=0.15 Score=53.50 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.+.|..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999999753
No 463
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.15 E-value=0.15 Score=53.82 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
+|.++.|-|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987653
No 464
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=90.06 E-value=0.064 Score=54.17 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=4.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl 563 (1118)
-++|+|++|+|||||++.|.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999875
No 465
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.98 E-value=0.19 Score=56.54 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=23.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 540 GRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 540 GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
+.+++|+||+|||||||...|+....
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 46899999999999999999998653
No 466
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=89.95 E-value=0.092 Score=52.57 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl 563 (1118)
-++|+|++|+|||||++.+.+-
T Consensus 24 ~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998653
No 467
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=89.89 E-value=0.19 Score=53.69 Aligned_cols=28 Identities=25% Similarity=0.223 Sum_probs=24.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 538 SPGRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 538 ~~GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
.+|.+++|.|++||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3688999999999999999999987653
No 468
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=89.80 E-value=0.16 Score=55.18 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=22.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 541 RVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 541 Ei~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
-.++|+|.+|+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4789999999999999999999764
No 469
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=89.78 E-value=0.14 Score=52.38 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl 563 (1118)
-++|+|++|+|||||++.+.+.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5889999999999999999864
No 470
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=89.76 E-value=0.18 Score=59.51 Aligned_cols=35 Identities=20% Similarity=0.385 Sum_probs=28.7
Q ss_pred eeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 529 LMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 529 IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
+++.+ ..+-+|+.++|+|+||+|||||++.|++..
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 45555 455689999999999999999999998754
No 471
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=89.75 E-value=0.14 Score=52.21 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.+.+-.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998643
No 472
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.71 E-value=0.17 Score=57.03 Aligned_cols=25 Identities=40% Similarity=0.619 Sum_probs=22.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 541 RVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 541 Ei~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
.+++|+||+|||||||.+.|+..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999998653
No 473
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.70 E-value=0.047 Score=60.39 Aligned_cols=42 Identities=17% Similarity=0.341 Sum_probs=30.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCc
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPS 714 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~ 714 (1118)
++.|+++|| ...|++.....+.+.+.+.. ....+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~-~~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYS-GVTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcC-CCceEEEEeCchh
Confidence 567999999 78899988888877776543 2345666776654
No 474
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=89.50 E-value=0.17 Score=52.43 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.+.+..
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 475
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=88.95 E-value=0.22 Score=51.18 Aligned_cols=39 Identities=10% Similarity=0.188 Sum_probs=28.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCc
Q 048718 671 EPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPS 714 (1118)
Q Consensus 671 ~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~ 714 (1118)
+++++++||--. +|+ ++++.|+.++..|..|+++.++.+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLT 114 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccc
Confidence 578999999743 543 356677777777899999888543
No 476
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=88.73 E-value=0.21 Score=53.59 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 048718 541 RVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 541 Ei~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-.++|+|++||||||+.+.|+..+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998644
No 477
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=88.61 E-value=0.22 Score=50.13 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 048718 543 SAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 543 ~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
+.|.||+|+|||||++.++..+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998754
No 478
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.41 E-value=0.27 Score=55.19 Aligned_cols=26 Identities=31% Similarity=0.577 Sum_probs=22.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 540 GRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 540 GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
..+++|+||+|||||||...|+....
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 45899999999999999999997653
No 479
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=88.40 E-value=0.25 Score=48.27 Aligned_cols=26 Identities=19% Similarity=0.103 Sum_probs=22.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 540 GRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 540 GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
+.-+.|.||+|+|||+|.+.|.....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 44588999999999999999998653
No 480
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=88.26 E-value=0.24 Score=53.76 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=22.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
++.-+.|.||+|+|||||.+.|+..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999998765
No 481
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=88.24 E-value=0.081 Score=66.45 Aligned_cols=32 Identities=25% Similarity=0.441 Sum_probs=28.5
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 534 TGKLSPGRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 534 Sl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
++.+.+|+.++|.||||+|||||.++|++...
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 55678999999999999999999999999753
No 482
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=88.13 E-value=0.26 Score=55.59 Aligned_cols=28 Identities=29% Similarity=0.404 Sum_probs=25.2
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 048718 535 GKLSPGRVSAVMGPSGAGKTTFLSALKG 562 (1118)
Q Consensus 535 l~I~~GEi~aIlGpnGSGKSTLLkiLaG 562 (1118)
+-+.+|.++.|.||+|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4578899999999999999999999875
No 483
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=87.87 E-value=0.29 Score=55.33 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 540 GRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 540 GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.-+++|+|++|+|||||++.|++.+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998764
No 484
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=87.80 E-value=0.27 Score=56.99 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 540 GRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 540 GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
-.+++|+||+|||||||.+.|+..+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC
Confidence 35789999999999999999987553
No 485
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=87.78 E-value=0.22 Score=57.80 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.++|+|++|+|||||++.|.|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998853
No 486
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=87.76 E-value=0.29 Score=53.80 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=22.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 540 GRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 540 GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
+-.++|+|.+|+|||||+|.|.|..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCc
Confidence 3468999999999999999999875
No 487
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=87.71 E-value=0.16 Score=57.14 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
.++|+|.+|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 488
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=87.70 E-value=0.24 Score=57.20 Aligned_cols=79 Identities=15% Similarity=0.132 Sum_probs=45.8
Q ss_pred HHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEE---eCCCCCCCHHHHHHHHHHHHHHHHCCC
Q 048718 628 VVERVIESLGLQHIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLIL---DEPTSGLDSSSSQLLLRALRREALEGV 704 (1118)
Q Consensus 628 ~v~~lL~~lgL~~~~dt~vg~~~~rgLSGGERQRVsIArALl~~P~lLlL---DEPTsGLD~~sa~~i~~~Lr~la~~G~ 704 (1118)
.+.++++.++.... .. .+|.++.+++.-..-+...|-|+++ |.+ + ...+.+..+.+...|.
T Consensus 181 ~~~~~l~~l~~~~~----~~-----~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~----~---~~~l~~l~~~~~~~~~ 244 (397)
T 1wxq_A 181 DVWEAMHKLNLPED----PT-----KWSQDDLLAFASEIRRVNKPMVIAANKADAA----S---DEQIKRLVREEEKRGY 244 (397)
T ss_dssp HHHHHHHHTTCCSC----GG-----GCCHHHHHHHHHHHHHHHSCEEEEEECGGGS----C---HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccCCc----cc-----cCCHHHHHHHHHhhhccCCCEEEEEeCcccc----c---hHHHHHHHHHHhhcCC
Confidence 45667777766432 12 3899998888777777778988887 443 1 1222222222233466
Q ss_pred EEEEEEcCCcHHHHhccC
Q 048718 705 NICTVVHQPSYALFRMFD 722 (1118)
Q Consensus 705 TIIvvtHq~~~~i~~~~D 722 (1118)
.+|.++=..+..+.++.+
T Consensus 245 ~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 245 IVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp EEEEECHHHHHHHHSCSS
T ss_pred cEEEEeccchhhHHHHHh
Confidence 677766555555544333
No 489
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=87.68 E-value=0.13 Score=54.87 Aligned_cols=22 Identities=36% Similarity=0.694 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 048718 543 SAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 543 ~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
+.|.||+|+|||||+++|++..
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7789999999999999999854
No 490
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=87.46 E-value=0.11 Score=52.97 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 048718 542 VSAVMGPSGAGKTTFLSALKG 562 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaG 562 (1118)
-++|+|++|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 589999999999999998865
No 491
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=87.20 E-value=0.2 Score=51.72 Aligned_cols=22 Identities=41% Similarity=0.718 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHH-HHcC
Q 048718 542 VSAVMGPSGAGKTTFLSA-LKGR 563 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLki-LaGl 563 (1118)
-++|+|++|+|||||++. +.|.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 378999999999999998 5554
No 492
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=87.08 E-value=0.33 Score=52.14 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 048718 540 GRVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 540 GEi~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
..-+.|.||+|+|||||.+.|+...
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3467899999999999999998753
No 493
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=87.01 E-value=0.24 Score=60.06 Aligned_cols=34 Identities=26% Similarity=0.503 Sum_probs=26.5
Q ss_pred eeeeeEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 529 LMRSVTGKLSPGRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 529 IL~nVSl~I~~GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
+|..++ .+--+++|+|++|+|||||+|.|.|...
T Consensus 30 ~L~~i~---~~~~~VaivG~pnvGKStLiN~L~g~~~ 63 (592)
T 1f5n_A 30 ILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKKK 63 (592)
T ss_dssp HHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred HHHhcc---CCCcEEEEECCCCCCHHHHHHhHcCCCC
Confidence 455542 2335789999999999999999999753
No 494
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=86.97 E-value=0.31 Score=54.29 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
+|..+.|.||+|+|||||++.|+....
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 567899999999999999999998764
No 495
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=86.87 E-value=0.34 Score=53.54 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 048718 541 RVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 541 Ei~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
--++|+|++|+|||||++.+.+..
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 458999999999999999988763
No 496
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=86.67 E-value=0.075 Score=53.97 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 048718 542 VSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 542 i~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-++|+|++|+|||||++.|.+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988753
No 497
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=86.65 E-value=0.79 Score=54.30 Aligned_cols=70 Identities=20% Similarity=0.200 Sum_probs=52.0
Q ss_pred CCCCHHHHHHHH--HHHHHhh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCc
Q 048718 652 RGISGGQRKRVN--VGLEMVM---------------EPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICTVVHQPS 714 (1118)
Q Consensus 652 rgLSGGERQRVs--IArALl~---------------~P~lLlLDEPTsGLD~~sa~~i~~~Lr~la~~G~TIIvvtHq~~ 714 (1118)
.++||||+|-.- |+.+++. .=.++++||. +-+|.......++.++++ |.=+|+++=.
T Consensus 378 g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~-- 451 (483)
T 3euj_A 378 SALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE-- 451 (483)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS--
T ss_pred CCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc--
Confidence 359999999643 3444333 1247999999 999999999999998865 6667777755
Q ss_pred HHHHhccCcEEEEe
Q 048718 715 YALFRMFDDLILLA 728 (1118)
Q Consensus 715 ~~i~~~~D~vivL~ 728 (1118)
.+....|.++.|.
T Consensus 452 -~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 -NISPERGTTYKLV 464 (483)
T ss_dssp -SCCCSSSEEEECC
T ss_pred -hhhhccCceEEEE
Confidence 3556788888775
No 498
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=86.57 E-value=0.32 Score=52.45 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 048718 540 GRVSAVMGPSGAGKTTFLSALKGRVP 565 (1118)
Q Consensus 540 GEi~aIlGpnGSGKSTLLkiLaGl~~ 565 (1118)
+.-+.|.||+|+|||||++.|+....
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34577999999999999999998653
No 499
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=86.50 E-value=0.3 Score=55.70 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 048718 539 PGRVSAVMGPSGAGKTTFLSALKGR 563 (1118)
Q Consensus 539 ~GEi~aIlGpnGSGKSTLLkiLaGl 563 (1118)
.+..++++|.+|+|||||+|.|.|.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4567899999999999999999986
No 500
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=86.50 E-value=0.29 Score=58.81 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 048718 541 RVSAVMGPSGAGKTTFLSALKGRV 564 (1118)
Q Consensus 541 Ei~aIlGpnGSGKSTLLkiLaGl~ 564 (1118)
-.++|+|..|+|||||+|.|.|..
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 378999999999999999999964
Done!