BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048720
(109 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IMA|B Chain B, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|D Chain D, Complex Strcuture Of Tarocystatin And Papain
Length = 91
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 63/87 (72%)
Query: 6 LLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQV 65
L+ G+ D + +A+VE F++ EHNKKENALL+F+R++KAK QVV+G ++ ++V
Sbjct: 2 LMGGIVDVEGAQNSAEVEELARFAVDEHNKKENALLQFSRLVKAKQQVVSGIMHHLTVEV 61
Query: 66 IKNVKKKIYEAKISVKSWNKFKQLWEF 92
I+ KKK+YEAK+ V++W K+L EF
Sbjct: 62 IEGGKKKVYEAKVWVQAWLNSKKLHEF 88
>pdb|2L4V|A Chain A, Three Dimensional Structure Of Pineapple Cystatin
Length = 135
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Query: 6 LLQGVYDYGSNRKNA-DVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQ 64
++ G+YD N +N D E F+++E+N K NALLEF RV+KAK QVV+G ++ ++
Sbjct: 42 IMGGIYDAPLNNENGFDKEDLARFAVREYNNKNNALLEFVRVVKAKEQVVSGMMHYLTVE 101
Query: 65 VIKNVKKKIYEAKISVKSWNKFKQLWEFKH 94
V KKK+YEAK+ + W F+QL EF +
Sbjct: 102 VNDAGKKKLYEAKVWEQVWMNFRQLQEFTY 131
>pdb|1EQK|A Chain A, Solution Structure Of Oryzacystatin-I, A Cysteine
Proteinase Inhibitor Of The Rice, Oryza Sativa L.
Japonica
Length = 102
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Query: 6 LLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQV 65
+L GV G N + + F++ EHNKK N+LLEF +++ K QVVAG LY F ++V
Sbjct: 8 VLGGVEPVG-NENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIEV 66
Query: 66 IKNVKKKIYEAKISVKSWNKFKQLWEFK 93
+ KK+YEAK+ K W FK+L EFK
Sbjct: 67 KEGDAKKLYEAKVWEKPWMDFKELQEFK 94
>pdb|3UL5|A Chain A, Saccharum Officinarum Canecystatin-1 In Space Group C2221
pdb|3UL5|B Chain B, Saccharum Officinarum Canecystatin-1 In Space Group C2221
pdb|3UL5|C Chain C, Saccharum Officinarum Canecystatin-1 In Space Group C2221
pdb|3UL5|D Chain D, Saccharum Officinarum Canecystatin-1 In Space Group C2221
pdb|3UL6|A Chain A, Saccharum Officinarum Canecystatin-1 In Space Group P6422
pdb|3UL6|B Chain B, Saccharum Officinarum Canecystatin-1 In Space Group P6422
Length = 139
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 4/87 (4%)
Query: 10 VYDYGSNRKNADVEG--FVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQVIK 67
V D + +N D+E F++ EHN K NA+LEF R++K + QVVAG ++ F +QV +
Sbjct: 49 VRDAPAGHEN-DLEAIELARFAVAEHNSKTNAMLEFERLVKVRHQVVAGTMHHFTVQVKE 107
Query: 68 -NVKKKIYEAKISVKSWNKFKQLWEFK 93
KK+YEAK+ K W FKQL F+
Sbjct: 108 AGGGKKLYEAKVWEKVWENFKQLQSFQ 134
>pdb|2W9P|A Chain A, Crystal Structure Of Potato Multicystatin
pdb|2W9P|B Chain B, Crystal Structure Of Potato Multicystatin
pdb|2W9P|C Chain C, Crystal Structure Of Potato Multicystatin
pdb|2W9P|D Chain D, Crystal Structure Of Potato Multicystatin
pdb|2W9P|E Chain E, Crystal Structure Of Potato Multicystatin
pdb|2W9P|F Chain F, Crystal Structure Of Potato Multicystatin
pdb|2W9P|G Chain G, Crystal Structure Of Potato Multicystatin
pdb|2W9P|H Chain H, Crystal Structure Of Potato Multicystatin
pdb|2W9P|I Chain I, Crystal Structure Of Potato Multicystatin
pdb|2W9P|J Chain J, Crystal Structure Of Potato Multicystatin
pdb|2W9P|K Chain K, Crystal Structure Of Potato Multicystatin
pdb|2W9P|L Chain L, Crystal Structure Of Potato Multicystatin
pdb|2W9P|M Chain M, Crystal Structure Of Potato Multicystatin
pdb|2W9P|N Chain N, Crystal Structure Of Potato Multicystatin
pdb|2W9Q|A Chain A, Crystal Structure Of Potato Multicystatin-P212121
Length = 87
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 15 SNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQVIKNV-KKKI 73
N N + F+IQ++NKK+NA LEF L K QVVAG +Y L + KKKI
Sbjct: 6 PNPNNTKFQELARFAIQDYNKKQNAHLEFVENLNVKEQVVAGIMYYITLAATDDAGKKKI 65
Query: 74 YEAKISVKSWNKFKQLWEFK 93
Y+AKI VK W FK++ EFK
Sbjct: 66 YKAKIWVKEWEDFKKVVEFK 85
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
Query: 6 LLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQV 65
LLQGVY G NR + IQE N L E + L A+ Q GK F+L +
Sbjct: 103 LLQGVYAMGFNRPS---------KIQE-NALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 152
Query: 66 IKNVKK 71
+ V+
Sbjct: 153 LSQVEP 158
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
Query: 6 LLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQV 65
LLQGVY G NR + IQE N L E + L A+ Q GK F+L +
Sbjct: 36 LLQGVYAMGFNRPS---------KIQE-NALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 85
Query: 66 IKNVKK 71
+ V+
Sbjct: 86 LSQVEP 91
>pdb|3LH4|A Chain A, Crystal Structure Of Sialostatin L2
Length = 115
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 3 LLLLLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEF---ARVLKAKVQVVAGKLY 59
+ L L+G Y SN+ + + H++ + ++ F VLK + Q VAG Y
Sbjct: 1 MELALRGGYRERSNQDDPEYLELAHYATSTWSAQQPGKTHFDTVVEVLKVETQTVAGTNY 60
Query: 60 CFILQVIKNV 69
L+V ++
Sbjct: 61 RLTLKVAEST 70
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
Query: 6 LLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQV 65
LLQGVY G NR + IQE N L E + L A+ Q GK F+L +
Sbjct: 52 LLQGVYAMGFNRPS---------KIQE-NALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 101
Query: 66 IKNVK 70
+ V+
Sbjct: 102 LSQVE 106
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
Query: 6 LLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQV 65
LLQGVY G NR + IQE N L E + L A+ Q GK F+L +
Sbjct: 73 LLQGVYAMGFNRPS---------KIQE-NALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 122
Query: 66 IKNVK 70
+ V+
Sbjct: 123 LSQVE 127
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp
And Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp
And Rna
Length = 412
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
Query: 6 LLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQV 65
LLQGVY G NR + IQE N L E + L A+ Q GK F+L +
Sbjct: 36 LLQGVYAMGFNRPS---------KIQE-NALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 85
Query: 66 IKNVK 70
+ V+
Sbjct: 86 LSQVE 90
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
Query: 6 LLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQV 65
LLQGVY G NR + IQE N L E + L A+ Q GK F+L +
Sbjct: 103 LLQGVYAMGFNRPS---------KIQE-NALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 152
Query: 66 IKNVK 70
+ V+
Sbjct: 153 LSQVE 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,070,475
Number of Sequences: 62578
Number of extensions: 96177
Number of successful extensions: 248
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 238
Number of HSP's gapped (non-prelim): 16
length of query: 109
length of database: 14,973,337
effective HSP length: 73
effective length of query: 36
effective length of database: 10,405,143
effective search space: 374585148
effective search space used: 374585148
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)