BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048723
(236 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7ZTL7|BCS1_XENLA Mitochondrial chaperone BCS1 OS=Xenopus laevis GN=bcs1l PE=2 SV=1
Length = 419
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 1 METKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL 59
+E E+I +D+K F E ++ + G ++RGYLLYGPPG GKS+ I A+A L Y +
Sbjct: 193 LEQGISEKIVQDVKGFIENPKWYSDRGIPYRRGYLLYGPPGCGKSSFITALAGELEYSI 251
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 41 GTGKSTMIAAMANFLNYDLVGEKGIVF-TTNYVDKLDPALIRRGRMDKRIEMSYCC 95
G G+ T + + N L+ E IVF TTN++D+LDPALIR GR+D + + +C
Sbjct: 303 GMGRLTF-SGLLNALDGVASTEARIVFMTTNHIDRLDPALIRPGRVDVKQYVGHCT 357
>sp|Q54DY9|BCS1B_DICDI Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum
GN=bcsl1b PE=3 SV=1
Length = 458
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 33/48 (68%)
Query: 5 KKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMA 52
K E I +D+KKF ++ G ++RGYLLYGPPGTGKS+ I A+A
Sbjct: 215 KSELIIQDVKKFLNNSDWYNDRGIPYRRGYLLYGPPGTGKSSFITALA 262
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 32 RGYLLYGPPGT---GKSTMIAAMANFLNYDLVGEKGIVF-TTNYVDKLDPALIRRGRMDK 87
+GY YG P G + + + N L+ E I+F TTN+++KLD LIR GR+D
Sbjct: 333 QGY--YGNPSVSSGGSALTFSGLLNALDGVAASEGRILFMTTNHLEKLDKVLIRPGRVDL 390
Query: 88 RIEMSYCC 95
+IE+ C
Sbjct: 391 QIEIGLCS 398
>sp|Q9P6Q3|BCS1_SCHPO Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1
Length = 449
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 1 METKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL- 59
+E+ K+ I D+ F ++ G ++RGYLLYGPPG+GK++ + A+A L+YD+
Sbjct: 212 LESNVKKMITDDVHDFLRNSQWYDTRGIPYRRGYLLYGPPGSGKTSFLYALAGELDYDIC 271
Query: 60 ---VGEKGIV 66
+ EKG+
Sbjct: 272 VLNLAEKGLT 281
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 20/25 (80%)
Query: 62 EKGIVFTTNYVDKLDPALIRRGRMD 86
E+ I TTN+ +KLDPAL+R GR+D
Sbjct: 339 ERIIFMTTNHPEKLDPALVRPGRVD 363
>sp|Q7ZV60|BCS1_DANRE Mitochondrial chaperone BCS1 OS=Danio rerio GN=bcs1l PE=2 SV=2
Length = 420
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 1 METKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL 59
+E+ E I D+K+F ++ G ++RGYLLYGPPG GKS+ I A+A L Y +
Sbjct: 193 LESGVAERIVDDVKEFIGNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGELGYSI 251
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 8/118 (6%)
Query: 41 GTGKSTMIAAMANFLNYDLVGEKGIVF-TTNYVDKLDPALIRRGRMDKRIEMSYCCFEAF 99
G G+ T + + N L+ E IVF TTN++++LDPAL+R GR+D + + +C
Sbjct: 304 GMGRLTF-SGLLNALDGVASSEARIVFMTTNFIERLDPALVRPGRVDLKQYVGHCSHWQL 362
Query: 100 MVLAKSYLDIESHA---FFAEINSLLAETNMASADVAENLMPKSDEEDADSCLKNLIE 154
+ + + ES A F+E +L A T++++A V + M + D +KN+ E
Sbjct: 363 TQMFRRFYPQESAAEADHFSE-QALAAHTDLSAAQVQGHFMLY--KTDPAGAIKNIAE 417
>sp|Q5E9H5|BCS1_BOVIN Mitochondrial chaperone BCS1 OS=Bos taurus GN=BCS1L PE=2 SV=1
Length = 419
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 1 METKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL 59
+E E I +D+++F + ++ G ++RGYLLYGPPG GKS+ I A+A L + +
Sbjct: 193 LEQGVTERIVRDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGELQHSI 251
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 41 GTGKSTMIAAMANFLNYDLVGEKGIVF-TTNYVDKLDPALIRRGRMDKRIEMSYC 94
G G+ T + + N L+ E IVF TTN++D+LDPALIR GR+D + + +C
Sbjct: 303 GLGRLTF-SGLLNALDGVASTEARIVFMTTNHIDRLDPALIRPGRVDMKEYVGHC 356
>sp|P32839|BCS1_YEAST Mitochondrial chaperone BCS1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BCS1 PE=1 SV=2
Length = 456
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 40/59 (67%)
Query: 1 METKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL 59
+++ KE I D+ F + ++ + G ++RGYLLYGPPG+GK++ I A+A L+Y++
Sbjct: 230 LDSGIKEGILDDVYDFMKNGKWYSDRGIPYRRGYLLYGPPGSGKTSFIQALAGELDYNI 288
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 38 GPPGTGKSTMIAAMANFLNYDLVGEKGIVF-TTNYVDKLDPALIRRGRMDKRI 89
G G S + + N L+ E+ I F TTN+ +KLD A++R GR+D ++
Sbjct: 332 GEQGFHSSVTFSGLLNALDGVTSSEETITFMTTNHPEKLDAAIMRPGRIDYKV 384
>sp|Q9CZP5|BCS1_MOUSE Mitochondrial chaperone BCS1 OS=Mus musculus GN=Bcs1l PE=1 SV=1
Length = 418
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 7 EEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL 59
+ I KD+++F + ++ G ++RGYLLYGPPG GKS+ I A+A L + +
Sbjct: 199 DRIVKDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGELEHSI 251
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 41 GTGKSTMIAAMANFLNYDLVGEKGIVF-TTNYVDKLDPALIRRGRMDKRIEMSYCCFEAF 99
G G+ T + + N L+ E IVF TTNY+D+LDPALIR GR+D + + YC
Sbjct: 303 GLGRLTF-SGLLNALDGVASTEARIVFMTTNYIDRLDPALIRPGRVDLKEYVGYCSHWQL 361
Query: 100 MVLAKSYLDIESHAF---FAEINSLLAETNMASADVAENLM 137
+ + + ++ + FAE + L A + ++ A V M
Sbjct: 362 TQMFQRFYPGQAPSLAENFAE-HVLKATSEISPAQVQGYFM 401
>sp|Q9Y276|BCS1_HUMAN Mitochondrial chaperone BCS1 OS=Homo sapiens GN=BCS1L PE=1 SV=1
Length = 419
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 7 EEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL 59
+ I +D+++F + ++ G ++RGYLLYGPPG GKS+ I A+A L + +
Sbjct: 199 DRIVRDVQEFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGELEHSI 251
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 41 GTGKSTMIAAMANFLNYDLVGEKGIVF-TTNYVDKLDPALIRRGRMDKRIEMSYCCFEAF 99
G G+ T + + N L+ E IVF TTN+VD+LDPALIR GR+D + + YC
Sbjct: 303 GLGRLTF-SGLLNALDGVASTEARIVFMTTNHVDRLDPALIRPGRVDLKEYVGYCSHWQL 361
Query: 100 MVLAKSYLDIESHAF---FAEINSLLAETNMASADVAENLM 137
+ + + ++ + FAE + L A ++ A V M
Sbjct: 362 TQMFQRFYPGQAPSLAENFAE-HVLRATNQISPAQVQGYFM 401
>sp|Q54HY8|BCS1A_DICDI Probable mitochondrial chaperone BCS1-A OS=Dictyostelium discoideum
GN=bcs1la PE=3 SV=1
Length = 421
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 6 KEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL 59
K ++ +D+K F + + G ++RGYLLYG PG GKS++I A+A LN D+
Sbjct: 196 KSKLIEDIKSFITNESWYRNRGIPYRRGYLLYGEPGNGKSSLINAIAGELNLDI 249
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 62 EKGIVF-TTNYVDKLDPALIRRGRMDKRIEMS 92
E I+F TTN ++ LD ALIR GR+D +I++S
Sbjct: 322 EGRILFMTTNKIELLDSALIREGRIDLKIKVS 353
>sp|Q58556|Y1156_METJA Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1156 PE=3 SV=1
Length = 903
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 5/125 (4%)
Query: 7 EEIKKDLKKFSE----GKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGE 62
EE+K++L++ E KE KIG +G LL+GPPGTGK+ + A+AN + +
Sbjct: 458 EEVKQELREAVEWPLKAKEVFEKIGVRPPKGVLLFGPPGTGKTLLAKAVANESGANFISV 517
Query: 63 KGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLA-KSYLDIESHAFFAEINSL 121
KG + +V + + A+ R ++ F+ +A K D+ S +N L
Sbjct: 518 KGPEIFSKWVGESEKAIREIFRKARQSAPCIIFFDEIDAIAPKRGRDLSSAVTDKVVNQL 577
Query: 122 LAETN 126
L E +
Sbjct: 578 LTELD 582
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Query: 6 KEEIKKDLKKFSE----GKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMAN 53
KEE+KK +++ E E K+G +G LL GPPGTGK+ + A+AN
Sbjct: 185 KEEVKK-VREMIELPMRHPELFEKLGIEPPKGVLLVGPPGTGKTLLAKAVAN 235
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 22/130 (16%)
Query: 61 GEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAF----------MVLAK----SY 106
G+ ++ TN + LDPAL R GR D+ I + E M LA+ Y
Sbjct: 314 GQVVVIGATNRPNALDPALRRPGRFDREIVIGVPDREGRKEILQIHTRNMPLAEDVDLDY 373
Query: 107 LDIESHAFF-AEINSLLAETNMASADVAENLMPKSDEEDADSCLKNLIEALKVAKE---E 162
L +H F A++ +L E M + ++P D E A+ K +++ LKV + E
Sbjct: 374 LADVTHGFVGADLAALCKEAAMRA---LRRVLPSIDLE-AEEIPKEVLDNLKVTMDDFKE 429
Query: 163 ARKNAEEEAL 172
A K+ E A+
Sbjct: 430 ALKDVEPSAM 439
>sp|P78578|PRS6B_ASPNG 26S protease regulatory subunit 6B homolog OS=Aspergillus niger
GN=tbpA PE=3 SV=1
Length = 423
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 5 KKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKG 64
+K+EI++ ++ + +IG RG LLYGPPGTGK+ ++ A+AN + G
Sbjct: 174 QKQEIREAVELPLTQFDLYKQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTTASFIRVNG 233
Query: 65 IVFTTNYVDKLDPALIR 81
F Y+ + P ++R
Sbjct: 234 SEFVQKYLGE-GPRMVR 249
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 19/99 (19%)
Query: 65 IVFTTNYVDKLDPALIRRGRMDKRIE-----------MSYCCFEAFMVLAKSYLDIESHA 113
++ TN D LDPAL+R GR+D++IE + + + M L+ +D++S
Sbjct: 308 VIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFSTIASKMSLSPE-VDLDSLI 366
Query: 114 FFAE------INSLLAETNMASADVAE-NLMPKSDEEDA 145
E I +++ E + + N++P+SD EDA
Sbjct: 367 VRNEPLSGAVIAAIMQEAGLRAVRKNRYNIIPRSDLEDA 405
>sp|O74894|PRS6B_SCHPO 26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpt3 PE=3 SV=1
Length = 389
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 5 KKEEIKKDLK-KFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEK 63
+K+E+++ ++ ++G Y +IG RG LLYGPPGTGK+ ++ A+AN + +
Sbjct: 142 QKQEVREAVELPLTQGDLY-RQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTAANFIRVV 200
Query: 64 GIVFTTNYVDKLDPALIR 81
G F Y+ + P ++R
Sbjct: 201 GSEFVQKYLGE-GPRMVR 217
Score = 37.7 bits (86), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 65 IVFTTNYVDKLDPALIRRGRMDKRIEM-SY 93
++ TN D LDPAL+R GR+D++IE SY
Sbjct: 276 VIMATNRADTLDPALLRPGRLDRKIEFPSY 305
>sp|Q9SEI4|PRS6B_ARATH 26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana
GN=RPT3 PE=1 SV=1
Length = 408
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 5 KKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKG 64
+K+EI++ ++ E +IG RG LLYGPPGTGK+ + A+AN + G
Sbjct: 163 QKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVG 222
Query: 65 IVFTTNYVDKLDPALIR 81
F Y+ + P ++R
Sbjct: 223 SEFVQKYLGE-GPRMVR 238
Score = 38.1 bits (87), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 65 IVFTTNYVDKLDPALIRRGRMDKRIEMS 92
++ TN D LDPAL+R GR+D++IE
Sbjct: 297 VIMATNRADTLDPALLRPGRLDRKIEFP 324
>sp|Q5UR45|YL572_MIMIV Putative AAA family ATPase L572 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L572 PE=3 SV=1
Length = 196
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 63 KGIVFTTNYVDKLDPALIRRGRMDKRIEMSYC 94
+ ++ TTN+ + LDPALIRRGR+D +IE S C
Sbjct: 110 RIVIMTTNHSEVLDPALIRRGRIDMQIEFSNC 141
>sp|P85200|PRS6B_HELAN 26S protease regulatory subunit 6B homolog OS=Helianthus annuus
PE=1 SV=1
Length = 414
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 5 KKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKG 64
+K+EI++ ++ E +IG RG LLYGPPGTGK+ + A+AN + G
Sbjct: 169 QKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVG 228
Query: 65 IVFTTNYVDKLDPALIR 81
F Y+ + P ++R
Sbjct: 229 SEFVQKYLGE-GPRMVR 244
Score = 37.7 bits (86), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 65 IVFTTNYVDKLDPALIRRGRMDKRIEMS 92
++ TN D LDPAL+R GR+D++IE
Sbjct: 303 VIMATNRADTLDPALLRPGRLDRKIEFP 330
>sp|O28303|PAN_ARCFU Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=pan PE=1 SV=1
Length = 398
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 44 KSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLA 103
+ TM+ +A +D G+ ++ TN +D LDPA++R GR D+ IE+ FE + +
Sbjct: 262 QRTMMQLLAELDGFDPRGDVKVIGATNRIDILDPAILRPGRFDRIIEVPLPTFEGRIQIF 321
Query: 104 KSY 106
K +
Sbjct: 322 KIH 324
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 7 EEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIV 66
EEI++ ++ E A++G +G LLYGPPGTGK+ + A+AN + G
Sbjct: 151 EEIREAVELPLLKPELFAEVGIEPPKGVLLYGPPGTGKTLLAKAVANQTRATFIRVVGSE 210
Query: 67 FTTNYV 72
F Y+
Sbjct: 211 FVQKYI 216
>sp|Q8SQI9|PRS6B_ENCCU 26S protease regulatory subunit 6B homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU08_1970 PE=1 SV=1
Length = 387
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 5 KKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKG 64
+K+EIK+ ++ + +IG +G LLYGPPGTGK+ ++ A+AN + G
Sbjct: 142 QKQEIKETVELPLLQSDLYRQIGIDPPQGVLLYGPPGTGKTMLVKAVANHTKATFIRVNG 201
Query: 65 IVFTTNYVDKLDPALIR 81
F Y+ + P ++R
Sbjct: 202 SEFVQKYLGE-GPRMVR 217
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 17/120 (14%)
Query: 44 KSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSY-------CCF 96
+ +I + +D ++ TN D +DPAL+R GR+D++IE F
Sbjct: 255 QRVLIELLNQMDGFDPAANVKVIMATNRADTIDPALLRPGRLDRKIEFPLPDRRQKRLVF 314
Query: 97 EAF---MVLAKSYLDIESHA------FFAEINSLLAETNMASADVAENLMPKSDEEDADS 147
A M L S +DIES A+INS+ E M + + ++ + D E+A S
Sbjct: 315 NAITSKMSLNDS-VDIESLVCRPEKISCADINSICQEAGMLAVRASRYMVTQRDFEEAYS 373
>sp|P33298|PRS6B_YEAST 26S protease regulatory subunit 6B homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPT3 PE=1
SV=2
Length = 428
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 5 KKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKG 64
+K+EI++ ++ + +IG RG LLYGPPGTGK+ ++ A+AN + G
Sbjct: 180 QKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNG 239
Query: 65 IVFTTNYVDKLDPALIR 81
F Y+ + P ++R
Sbjct: 240 SEFVHKYLGE-GPRMVR 255
Score = 38.1 bits (87), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 44 KSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIE 90
+ +I + +D ++ TN D LDPAL+R GR+D++IE
Sbjct: 293 QRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIE 339
>sp|Q5UT56|PAN2_HALVD Proteasome-activating nucleotidase 2 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=pan2 PE=2 SV=1
Length = 412
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%)
Query: 8 EIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVF 67
E+++ +++ E E A++G G LLYGPPGTGK+ + A+AN N + G
Sbjct: 163 EVREAVEQPLENPEMFAEVGIDPPSGVLLYGPPGTGKTMLAKAVANETNASFIKMAGSEL 222
Query: 68 TTNYV 72
++
Sbjct: 223 VQKFI 227
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 44 KSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLA 103
+ TM+ ++ +D G+ I+ TN D LD A++R GR D+ IE+ E
Sbjct: 273 QRTMMQLLSEMDGFDDRGDIRIIAATNRFDMLDEAILRPGRFDRLIEVPKPAVEG----R 328
Query: 104 KSYLDIES 111
+ LDI +
Sbjct: 329 RHILDIHT 336
>sp|P53549|PRS10_YEAST 26S protease subunit RPT4 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPT4 PE=1 SV=4
Length = 437
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 44 KSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMS 92
+ T++ + +D +G+ I+ TN D LDPAL+R GR+D+++E+
Sbjct: 302 QRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIP 350
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFL--NYDLV 60
T++ E+++ ++ + E ++G +G LLYGPPGTGK+ + A+A + N+
Sbjct: 187 TEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFS 246
Query: 61 GEKGIV 66
GIV
Sbjct: 247 PASGIV 252
>sp|O74445|PRS10_SCHPO Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpt4 PE=3 SV=2
Length = 388
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 44 KSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMS 92
+ T++ + +D +G+ I+ TN D LDPAL+R GR+D++IE+
Sbjct: 253 QRTLMELLNQMDGFDYLGQTKIIMATNRPDTLDPALLRPGRLDRKIEIP 301
Score = 38.1 bits (87), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 21 EYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDK 74
E ++G +G LLYGPPGTGK+ + A+A L + + V ++ VDK
Sbjct: 156 ELFLRVGIKPPKGVLLYGPPGTGKTLLARAVAASLGVNFLK----VVSSAIVDK 205
>sp|A3MS27|RFCL_PYRCJ Replication factor C large subunit OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=rfcL PE=3 SV=1
Length = 421
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 11/70 (15%)
Query: 2 ETKKKEEIKKDL-----KKFSEGKEYCAKIGKAW------KRGYLLYGPPGTGKSTMIAA 50
E +EE K+ L +F +E+CA+ K R LL+GPPG GK+T++ A
Sbjct: 16 EIVNQEEAKQILASWICTRFKAPQEFCARWAKRRDKEIKEARAVLLWGPPGIGKTTLVHA 75
Query: 51 MANFLNYDLV 60
+A + Y+LV
Sbjct: 76 LAKEIGYELV 85
>sp|Q9HPF0|CDCH_HALSA Protein CdcH OS=Halobacterium salinarum (strain ATCC 700922 / JCM
11081 / NRC-1) GN=cdcH PE=3 SV=1
Length = 742
Score = 44.7 bits (104), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 51/101 (50%)
Query: 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGE 62
T+ K +K+ ++ E ++G G LLYGPPGTGK+ M A+AN N + +
Sbjct: 468 TEAKNNVKESVEWPLNQPEKFTRMGVEPPAGVLLYGPPGTGKTLMAKAVANETNANFISV 527
Query: 63 KGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLA 103
+G + +V + + A+ + R +++ + F+ LA
Sbjct: 528 RGPQLLSKWVGESEKAIRQTFRKARQVAPTVIFFDELDSLA 568
Score = 33.5 bits (75), Expect = 1.2, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 25 KIGKAWKRGYLLYGPPGTGKSTMIAAMAN 53
K+G +G LL+GPPGTGK+ + A+AN
Sbjct: 217 KLGIEPPQGVLLHGPPGTGKTLLAKAVAN 245
Score = 33.5 bits (75), Expect = 1.4, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 61 GEKGIVFTTNYVDKLDPALIRRGRMDKRIEM 91
G+ ++ TN VD +DPAL R GR D+ IE+
Sbjct: 324 GQVIVIAATNRVDAVDPALRRPGRFDREIEI 354
>sp|P48601|PRS4_DROME 26S protease regulatory subunit 4 OS=Drosophila melanogaster
GN=Pros26.4 PE=2 SV=2
Length = 439
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 44 KSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYC---CFEAFM 100
+ TM+ + +D G+ ++ TN ++ LDPALIR GR+D++IE
Sbjct: 305 QRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIF 364
Query: 101 VLAKSYLDIESHAFFAEINSLLAETNMASADV 132
+ S + + +E+ ++A+ +++ AD+
Sbjct: 365 TIHTSRMTLAEDVNLSEL--IMAKDDLSGADI 394
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 7 EEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMAN 53
+EIK+ ++ EY ++G +G +LYGPPGTGK+ + A+AN
Sbjct: 194 QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVAN 240
>sp|P54778|PRS6B_SOLTU 26S protease regulatory subunit 6B homolog OS=Solanum tuberosum
PE=2 SV=1
Length = 413
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 5 KKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKG 64
+K+EI++ ++ E +IG RG LLYGPPGTGK+ + A+A+ + G
Sbjct: 168 QKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVG 227
Query: 65 IVFTTNYVDKLDPALIR 81
F Y+ + P ++R
Sbjct: 228 SEFVQKYLGE-GPRMVR 243
Score = 38.1 bits (87), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 65 IVFTTNYVDKLDPALIRRGRMDKRIEMS 92
++ TN D LDPAL+R GR+D++IE
Sbjct: 302 VIMATNRADTLDPALLRPGRLDRKIEFP 329
>sp|Q9ZPR1|CD48B_ARATH Cell division control protein 48 homolog B OS=Arabidopsis
thaliana GN=CDC48B PE=2 SV=1
Length = 603
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 26 IGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLV 60
+G W RG LLYGPPGTGK++++ A+ + L+
Sbjct: 51 LGLKWPRGLLLYGPPGTGKTSLVRAVVQECDAHLI 85
Score = 35.0 bits (79), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 65 IVFTTNYVDKLDPALIRRGRMDKRIEMS 92
+V +TN VD +DPAL R GR D +E+S
Sbjct: 167 VVASTNRVDAIDPALRRAGRFDALVEVS 194
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 8/45 (17%)
Query: 11 KDLKK-FSEGKEYC-------AKIGKAWKRGYLLYGPPGTGKSTM 47
KDLKK + E+ K+G + RG LL+GPPG K+T+
Sbjct: 292 KDLKKKLQQAVEWPIKHSAAFVKMGISPMRGILLHGPPGCSKTTL 336
>sp|P62193|PRS4_RAT 26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1
PE=2 SV=1
Length = 440
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 44 KSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMS 92
+ TM+ + +D G+ ++ TN ++ LDPALIR GR+D++IE
Sbjct: 306 QRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFP 354
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 7 EEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMAN 53
+EIK+ ++ EY ++G +G +LYGPPGTGK+ + A+AN
Sbjct: 195 QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVAN 241
>sp|P62192|PRS4_MOUSE 26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1
SV=1
Length = 440
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 44 KSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMS 92
+ TM+ + +D G+ ++ TN ++ LDPALIR GR+D++IE
Sbjct: 306 QRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFP 354
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 7 EEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMAN 53
+EIK+ ++ EY ++G +G +LYGPPGTGK+ + A+AN
Sbjct: 195 QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVAN 241
>sp|P62191|PRS4_HUMAN 26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1
SV=1
Length = 440
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 44 KSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMS 92
+ TM+ + +D G+ ++ TN ++ LDPALIR GR+D++IE
Sbjct: 306 QRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFP 354
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 7 EEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMAN 53
+EIK+ ++ EY ++G +G +LYGPPGTGK+ + A+AN
Sbjct: 195 QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVAN 241
>sp|Q01939|PRS8_YEAST 26S protease regulatory subunit 8 homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPT6 PE=1
SV=4
Length = 405
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGE 62
TK+ +EIK+ ++ + E +G A +G +LYGPPGTGK+ + A+A+ + +
Sbjct: 154 TKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRV 213
Query: 63 KGIVFTTNYV 72
G Y+
Sbjct: 214 SGAELVQKYI 223
Score = 39.3 bits (90), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 41 GTGKSTMIAAMANFLN----YDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIE 90
G G S + M LN ++ I+ TN +D LDPAL+R GR+D++IE
Sbjct: 262 GGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIE 315
>sp|Q90732|PRS4_CHICK 26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2
SV=1
Length = 440
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 44 KSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMS 92
+ TM+ + +D G+ ++ TN ++ LDPALIR GR+D++IE
Sbjct: 306 QRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFP 354
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 7 EEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMAN 53
+EIK+ ++ EY ++G +G +LYGPPGTGK+ + A+AN
Sbjct: 195 QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVAN 241
>sp|Q63347|PRS7_RAT 26S protease regulatory subunit 7 OS=Rattus norvegicus GN=Psmc2
PE=1 SV=3
Length = 433
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 17/100 (17%)
Query: 44 KSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEA----F 99
+ TM+ + +D G ++ TN D LDPAL+R GR+D++IE S E F
Sbjct: 296 QRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIF 355
Query: 100 MVLAKSYLDIESHAFF------------AEINSLLAETNM 127
+ A+S + +E F AEI S+ E M
Sbjct: 356 KIHARS-MSVERDIRFELLARLCPNSTGAEIRSVCTEAGM 394
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 6 KEEIKKDLKKFSEGK----EYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVG 61
KE+I+K L++ E E +G +G LL+GPPGTGK+ A+AN + +
Sbjct: 181 KEQIEK-LREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIP 239
Query: 62 EKGIVFTTNYV 72
G YV
Sbjct: 240 VIGSELVQKYV 250
>sp|P46471|PRS7_MOUSE 26S protease regulatory subunit 7 OS=Mus musculus GN=Psmc2 PE=1
SV=5
Length = 433
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 17/100 (17%)
Query: 44 KSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEA----F 99
+ TM+ + +D G ++ TN D LDPAL+R GR+D++IE S E F
Sbjct: 296 QRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIF 355
Query: 100 MVLAKSYLDIESHAFF------------AEINSLLAETNM 127
+ A+S + +E F AEI S+ E M
Sbjct: 356 KIHARS-MSVERDIRFELLARLCPNSTGAEIRSVCTEAGM 394
Score = 34.7 bits (78), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 6 KEEIKKDLKKFSEGK----EYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVG 61
KE+I+K L++ E E +G +G LL+GPPGTGK+ A+AN + +
Sbjct: 181 KEQIEK-LREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIR 239
Query: 62 EKGIVFTTNYV 72
G YV
Sbjct: 240 VIGSELVQKYV 250
>sp|Q4R4R0|PRS7_MACFA 26S protease regulatory subunit 7 OS=Macaca fascicularis GN=PSMC2
PE=2 SV=3
Length = 433
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 17/100 (17%)
Query: 44 KSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEA----F 99
+ TM+ + +D G ++ TN D LDPAL+R GR+D++IE S E F
Sbjct: 296 QRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIF 355
Query: 100 MVLAKSYLDIESHAFF------------AEINSLLAETNM 127
+ A+S + +E F AEI S+ E M
Sbjct: 356 KIHARS-MSVERDIRFELLARLCPNSTGAEIRSVCTEAGM 394
Score = 35.0 bits (79), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 6 KEEIKKDLKKFSEGK----EYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVG 61
KE+I+K L++ E E +G +G LL+GPPGTGK+ A+AN + +
Sbjct: 181 KEQIEK-LREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIR 239
Query: 62 EKGIVFTTNYV 72
G YV
Sbjct: 240 VIGSELVQKYV 250
>sp|P35998|PRS7_HUMAN 26S protease regulatory subunit 7 OS=Homo sapiens GN=PSMC2 PE=1
SV=3
Length = 433
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 17/100 (17%)
Query: 44 KSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEA----F 99
+ TM+ + +D G ++ TN D LDPAL+R GR+D++IE S E F
Sbjct: 296 QRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIF 355
Query: 100 MVLAKSYLDIESHAFF------------AEINSLLAETNM 127
+ A+S + +E F AEI S+ E M
Sbjct: 356 KIHARS-MSVERDIRFELLARLCPNSTGAEIRSVCTEAGM 394
Score = 35.0 bits (79), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 6 KEEIKKDLKKFSEGK----EYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVG 61
KE+I+K L++ E E +G +G LL+GPPGTGK+ A+AN + +
Sbjct: 181 KEQIEK-LREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIR 239
Query: 62 EKGIVFTTNYV 72
G YV
Sbjct: 240 VIGSELVQKYV 250
>sp|Q5E9F9|PRS7_BOVIN 26S protease regulatory subunit 7 OS=Bos taurus GN=PSMC2 PE=2 SV=3
Length = 433
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 17/100 (17%)
Query: 44 KSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEA----F 99
+ TM+ + +D G ++ TN D LDPAL+R GR+D++IE S E F
Sbjct: 296 QRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIF 355
Query: 100 MVLAKSYLDIESHAFF------------AEINSLLAETNM 127
+ A+S + +E F AEI S+ E M
Sbjct: 356 KIHARS-MSVERDIRFELLARLCPNSTGAEIRSVCTEAGM 394
Score = 35.0 bits (79), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 6 KEEIKKDLKKFSEGK----EYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVG 61
KE+I+K L++ E E +G +G LL+GPPGTGK+ A+AN + +
Sbjct: 181 KEQIEK-LREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIR 239
Query: 62 EKGIVFTTNYV 72
G YV
Sbjct: 240 VIGSELVQKYV 250
>sp|Q9SL67|PRS4B_ARATH 26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis
thaliana GN=RPT2B PE=2 SV=1
Length = 443
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 44 KSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMS 92
+ TM+ + +D G+ ++ TN ++ LDPAL+R GR+D++IE
Sbjct: 309 QRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP 357
Score = 34.3 bits (77), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 7 EEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMAN 53
+EIK+ ++ E IG +G +LYG PGTGK+ + A+AN
Sbjct: 198 QEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVAN 244
>sp|Q9SZD4|PRS4A_ARATH 26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis
thaliana GN=RPT2A PE=2 SV=1
Length = 443
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 44 KSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMS 92
+ TM+ + +D G+ ++ TN ++ LDPAL+R GR+D++IE
Sbjct: 309 QRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP 357
Score = 34.3 bits (77), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 7 EEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMAN 53
+EIK+ ++ E IG +G +LYG PGTGK+ + A+AN
Sbjct: 198 QEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVAN 244
>sp|P33299|PRS7_YEAST 26S protease regulatory subunit 7 homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPT1 PE=1
SV=1
Length = 467
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 44 KSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEA----F 99
+ TM+ + +D G ++F TN + LDPAL+R GR+D+++E S E F
Sbjct: 330 QRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIF 389
Query: 100 MVLAKS 105
+ +KS
Sbjct: 390 RIHSKS 395
Score = 37.4 bits (85), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%)
Query: 21 EYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV 72
E A +G +G LLYGPPGTGK+ A+AN + + G YV
Sbjct: 233 ERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYV 284
>sp|D4GUJ7|PAN1_HALVD Proteasome-activating nucleotidase 1 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=pan1 PE=2 SV=2
Length = 406
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%)
Query: 4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEK 63
++ +E+++ ++ + E A++G G LLYGPPGTGK+ + A+AN N +
Sbjct: 157 EQMQEVRETVEMPLDRPEMFAEVGIDPPSGVLLYGPPGTGKTMLAKAVANQTNASFIKMA 216
Query: 64 G 64
G
Sbjct: 217 G 217
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 44 KSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMS 92
+ TM+ +A +D G I+ TN D LDPA++R GR D+ IE+
Sbjct: 271 QRTMMQLLAEMDGFDERGNIRIIAATNRFDMLDPAILRPGRFDRLIEVP 319
>sp|P46466|PRS4_ORYSJ 26S protease regulatory subunit 4 homolog OS=Oryza sativa subsp.
japonica GN=TBP2 PE=2 SV=2
Length = 448
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 44 KSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMS 92
+ TM+ + +D G+ ++ TN ++ LDPAL+R GR+D++IE
Sbjct: 314 QRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP 362
Score = 33.9 bits (76), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 7 EEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMAN 53
+EIK+ ++ E IG +G +LYG PGTGK+ + A+AN
Sbjct: 203 QEIKEAVELPLTHPELYEDIGIRPPKGVILYGEPGTGKTLLAKAVAN 249
>sp|O16368|PRS4_CAEEL Probable 26S protease regulatory subunit 4 OS=Caenorhabditis
elegans GN=rpt-2 PE=3 SV=1
Length = 443
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 44 KSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMS 92
+ TM+ + +D G+ ++ TN ++ LDPALIR GR+D++IE
Sbjct: 309 QRTMLELLNQLDGFDSRGDVKVLMATNRIESLDPALIRPGRIDRKIEFP 357
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMAN 53
++ +EIK+ ++ EY ++G +G +LYG PGTGK+ + A+AN
Sbjct: 195 QQIQEIKEAVELPLTHPEYYEEMGIRPPKGVILYGCPGTGKTLLAKAVAN 244
>sp|P46472|PRS7_XENLA 26S protease regulatory subunit 7 OS=Xenopus laevis GN=psmc2 PE=2
SV=1
Length = 433
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 17/100 (17%)
Query: 44 KSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEA----F 99
+ TM+ + +D G ++ TN D LDPAL+R GR+D++IE S E F
Sbjct: 296 QRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIF 355
Query: 100 MVLAKSYLDIESHAFF------------AEINSLLAETNM 127
+ A+S + +E F AEI S+ E M
Sbjct: 356 KIHARS-MSVERDIRFELLARLCPNSTGAEIRSVCTEAGM 394
Score = 34.7 bits (78), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 6 KEEIKKDLKKFSEGK----EYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMAN 53
KE+I+K L++ E E +G +G LL+GPPGTGK+ A+AN
Sbjct: 181 KEQIEK-LREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVAN 231
>sp|Q8TX03|PAN_METKA Proteasome-activating nucleotidase OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=pan PE=3
SV=1
Length = 436
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 8 EIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMAN 53
EI++ ++K + E K+G +G LLYGPPGTGK+ + A+AN
Sbjct: 190 EIREVVEKPLKEPELFEKVGVEPPKGVLLYGPPGTGKTLLAKAVAN 235
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 44 KSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSY 93
+ T+ +A +D + + ++ TN D LDPAL+R GR D+ I++
Sbjct: 300 QRTLTQLLAEMDGFDPLDDIKVIAATNRKDILDPALLRPGRFDRHIKIPL 349
>sp|O17071|PRS10_CAEEL Probable 26S protease regulatory subunit 10B OS=Caenorhabditis
elegans GN=rpt-4 PE=1 SV=2
Length = 406
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 31/48 (64%)
Query: 44 KSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEM 91
+ T++ + +D +G+ ++ TN D LDPAL+R GR+D++IE+
Sbjct: 271 QRTLMELLNQLDGFDSLGKVKVIMATNRPDTLDPALLRPGRLDRKIEI 318
Score = 38.5 bits (88), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 21 EYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDK 74
E ++G +G LL+GPPGTGK+ + A+A+ L+ + + V ++ VDK
Sbjct: 174 ELFKRVGITPPKGCLLFGPPGTGKTLLARAVASQLDCNFLK----VVSSAIVDK 223
>sp|B1YC69|RFCL_PYRNV Replication factor C large subunit OS=Pyrobaculum neutrophilum
(strain DSM 2338 / JCM 9278 / V24Sta) GN=rfcL PE=3 SV=1
Length = 422
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 6/52 (11%)
Query: 15 KFSEGKEYCAKIGK------AWKRGYLLYGPPGTGKSTMIAAMANFLNYDLV 60
+F KE+CA+ K A + LL GPPG GK+T++ A+A + Y+L+
Sbjct: 34 RFRAPKEFCARWAKKREKEVAEAKAVLLAGPPGIGKTTVVHALAREIRYELI 85
>sp|B0K657|FTSH2_THEPX ATP-dependent zinc metalloprotease FtsH 2 OS=Thermoanaerobacter sp.
(strain X514) GN=ftsH2 PE=3 SV=1
Length = 510
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%)
Query: 16 FSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV 72
F E K+G +G L YGPPGTGK+ + A+A N + G F YV
Sbjct: 102 FMTNTEKYNKMGAKIPKGILFYGPPGTGKTLLATALAGETNSTFISASGSEFVEKYV 158
Score = 31.2 bits (69), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 65 IVFTTNYVDKLDPALIRRGRMDKRIEM 91
++ TN +D LD AL+R GR D+ I +
Sbjct: 222 VIGATNRIDMLDEALLRPGRFDRTIHI 248
>sp|Q8ZYK3|RFCL_PYRAE Replication factor C large subunit OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcL PE=3 SV=1
Length = 422
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 15 KFSEGKEYCAKIGK------AWKRGYLLYGPPGTGKSTMIAAMANFLNYDLV 60
KF KE+C + K A + LL GPPG GK+T++ A+A + Y+L+
Sbjct: 34 KFRAPKEFCTRWAKKRDKEVAEAKAILLAGPPGVGKTTLVHALAREIRYELI 85
>sp|P34124|PRS8_DICDI 26S protease regulatory subunit 8 OS=Dictyostelium discoideum
GN=psmC5 PE=1 SV=2
Length = 403
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEK 63
K+ +EIK+ ++ + E +G A +G LLYGPPGTGK+ + A+A+ + +
Sbjct: 152 KQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVS 211
Query: 64 GIVFTTNYV 72
G Y+
Sbjct: 212 GSELVQKYI 220
Score = 38.5 bits (88), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 44 KSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIE 90
+ TM+ + ++ ++ TN +D LDPAL+R GR+D++IE
Sbjct: 267 QRTMLELLNQLDGFESTKNIKVLMCTNRIDILDPALLRPGRIDRKIE 313
>sp|O34703|YJOB_BACSU Uncharacterized ATPase YjoB OS=Bacillus subtilis (strain 168)
GN=yjoB PE=1 SV=1
Length = 423
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 6 KEEIKKDLKKFSEG-KEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMA 52
K+EI + + +F K + +KRG LLYGPPG GK+T++ ++A
Sbjct: 194 KKEIYRSIDQFFHSDKSFYQTYDIPYKRGILLYGPPGNGKTTLVKSIA 241
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.130 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,450,463
Number of Sequences: 539616
Number of extensions: 3827567
Number of successful extensions: 47680
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1292
Number of HSP's successfully gapped in prelim test: 857
Number of HSP's that attempted gapping in prelim test: 36407
Number of HSP's gapped (non-prelim): 8668
length of query: 236
length of database: 191,569,459
effective HSP length: 114
effective length of query: 122
effective length of database: 130,053,235
effective search space: 15866494670
effective search space used: 15866494670
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)