Query 048723
Match_columns 236
No_of_seqs 226 out of 2160
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 12:24:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048723.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048723hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0743 AAA+-type ATPase [Post 100.0 6.9E-36 1.5E-40 270.4 17.3 167 1-169 205-444 (457)
2 COG1222 RPT1 ATP-dependent 26S 100.0 2.4E-32 5.2E-37 241.1 14.1 157 3-171 157-388 (406)
3 COG0466 Lon ATP-dependent Lon 100.0 1.2E-28 2.6E-33 232.9 14.0 181 34-236 353-623 (782)
4 KOG0730 AAA+-type ATPase [Post 99.9 5.6E-27 1.2E-31 219.8 13.4 136 3-138 440-647 (693)
5 KOG0726 26S proteasome regulat 99.9 2.6E-26 5.6E-31 198.5 10.0 157 3-171 191-422 (440)
6 KOG0734 AAA+-type ATPase conta 99.9 2.9E-26 6.2E-31 210.7 7.9 135 3-138 310-516 (752)
7 KOG0731 AAA+-type ATPase conta 99.9 2.7E-25 5.9E-30 213.3 14.8 135 3-138 317-528 (774)
8 KOG2004 Mitochondrial ATP-depe 99.9 2.4E-25 5.1E-30 210.1 13.5 187 34-235 441-744 (906)
9 KOG0733 Nuclear AAA ATPase (VC 99.9 8.7E-24 1.9E-28 196.8 14.7 134 4-137 518-727 (802)
10 KOG0727 26S proteasome regulat 99.9 3.8E-24 8.2E-29 182.2 10.9 156 4-171 162-392 (408)
11 PTZ00454 26S protease regulato 99.9 1.4E-23 3.1E-28 192.3 15.4 157 3-159 151-386 (398)
12 KOG0733 Nuclear AAA ATPase (VC 99.9 2.2E-23 4.7E-28 194.2 13.7 131 6-137 199-405 (802)
13 KOG0728 26S proteasome regulat 99.9 6E-23 1.3E-27 174.7 14.2 158 3-171 153-384 (404)
14 KOG0729 26S proteasome regulat 99.9 2.7E-23 5.8E-28 178.2 10.3 157 4-171 184-414 (435)
15 KOG0652 26S proteasome regulat 99.9 4.8E-23 1E-27 176.1 11.4 155 4-170 178-407 (424)
16 PRK03992 proteasome-activating 99.9 3E-22 6.6E-27 183.4 14.2 158 3-160 137-373 (389)
17 PTZ00361 26 proteosome regulat 99.9 5.8E-22 1.2E-26 183.2 14.6 156 4-171 190-420 (438)
18 CHL00195 ycf46 Ycf46; Provisio 99.9 1.1E-21 2.4E-26 183.7 14.4 137 23-159 251-463 (489)
19 TIGR01243 CDC48 AAA family ATP 99.9 8.7E-22 1.9E-26 193.3 14.0 135 3-137 459-666 (733)
20 KOG0736 Peroxisome assembly fa 99.9 1E-21 2.2E-26 186.8 13.4 152 3-166 678-906 (953)
21 COG0465 HflB ATP-dependent Zn 99.9 8.2E-22 1.8E-26 186.2 11.3 135 3-138 156-365 (596)
22 COG1223 Predicted ATPase (AAA+ 99.9 5.3E-21 1.1E-25 163.4 13.9 149 9-173 132-353 (368)
23 KOG0738 AAA+-type ATPase [Post 99.9 4.8E-21 1E-25 171.0 13.0 146 4-164 219-441 (491)
24 TIGR01241 FtsH_fam ATP-depende 99.9 8.8E-21 1.9E-25 178.7 15.4 156 3-159 61-295 (495)
25 TIGR01242 26Sp45 26S proteasom 99.8 1.2E-20 2.7E-25 171.2 14.6 135 3-137 128-337 (364)
26 COG0464 SpoVK ATPases of the A 99.8 1.4E-20 3E-25 177.1 14.5 136 3-138 248-457 (494)
27 KOG0737 AAA+-type ATPase [Post 99.8 1.2E-20 2.7E-25 167.5 11.3 134 3-138 98-306 (386)
28 TIGR03689 pup_AAA proteasome A 99.8 4.3E-20 9.3E-25 173.3 14.2 131 3-137 188-404 (512)
29 KOG0651 26S proteasome regulat 99.8 1.8E-20 3.9E-25 163.3 9.6 154 4-159 139-373 (388)
30 CHL00176 ftsH cell division pr 99.8 8.4E-20 1.8E-24 175.8 15.2 156 3-159 189-423 (638)
31 KOG0735 AAA+-type ATPase [Post 99.8 2.4E-19 5.3E-24 169.6 12.1 135 4-138 674-880 (952)
32 TIGR00763 lon ATP-dependent pr 99.8 4.6E-19 9.9E-24 174.9 14.1 147 62-236 463-625 (775)
33 PRK10733 hflB ATP-dependent me 99.8 1.4E-18 3E-23 168.3 14.5 134 4-138 159-367 (644)
34 KOG0732 AAA+-type ATPase conta 99.8 7.2E-19 1.6E-23 173.4 12.6 135 4-138 272-484 (1080)
35 PRK10787 DNA-binding ATP-depen 99.8 3.3E-19 7.3E-24 175.3 9.7 176 32-236 350-621 (784)
36 KOG0739 AAA+-type ATPase [Post 99.8 2.2E-19 4.8E-24 156.0 7.3 127 4-133 140-340 (439)
37 CHL00206 ycf2 Ycf2; Provisiona 99.8 1.3E-18 2.7E-23 178.5 12.2 140 20-159 1619-1877(2281)
38 TIGR01243 CDC48 AAA family ATP 99.7 3.4E-17 7.4E-22 160.9 14.1 135 3-137 184-390 (733)
39 KOG0741 AAA+-type ATPase [Post 99.7 6.7E-18 1.4E-22 155.8 5.9 122 17-138 242-450 (744)
40 PLN00020 ribulose bisphosphate 99.7 1.9E-16 4.1E-21 142.3 13.5 99 22-123 139-326 (413)
41 KOG0730 AAA+-type ATPase [Post 99.7 2.3E-16 4.9E-21 148.8 12.8 133 6-139 193-397 (693)
42 KOG0740 AAA+-type ATPase [Post 99.7 1.3E-16 2.7E-21 145.8 10.0 137 4-143 160-371 (428)
43 KOG0742 AAA+-type ATPase [Post 99.6 9.2E-14 2E-18 125.5 14.8 108 29-138 382-587 (630)
44 COG1125 OpuBA ABC-type proline 99.5 1.8E-13 3.9E-18 117.2 8.0 138 12-153 6-150 (309)
45 KOG0744 AAA+-type ATPase [Post 99.4 1E-12 2.2E-17 115.7 12.3 78 28-107 174-340 (423)
46 PF00004 AAA: ATPase family as 99.3 2.4E-12 5.2E-17 99.0 7.2 59 34-93 1-132 (132)
47 PF05496 RuvB_N: Holliday junc 99.3 3.7E-11 8E-16 101.8 11.4 103 32-137 51-222 (233)
48 CHL00181 cbbX CbbX; Provisiona 99.2 7.7E-10 1.7E-14 97.7 15.4 104 3-109 29-211 (287)
49 COG1117 PstB ABC-type phosphat 99.2 2.7E-11 5.8E-16 101.5 5.6 133 11-144 11-167 (253)
50 TIGR02881 spore_V_K stage V sp 99.2 9.9E-10 2.1E-14 95.5 15.7 103 4-109 13-193 (261)
51 COG2255 RuvB Holliday junction 99.2 4.7E-10 1E-14 97.6 11.9 73 34-108 55-195 (332)
52 COG2256 MGS1 ATPase related to 99.1 3.6E-10 7.7E-15 102.3 10.4 71 32-105 49-174 (436)
53 TIGR02880 cbbX_cfxQ probable R 99.1 2.9E-09 6.2E-14 93.9 15.3 103 4-109 29-210 (284)
54 COG3842 PotA ABC-type spermidi 99.1 1.3E-10 2.9E-15 104.6 6.9 144 13-163 11-174 (352)
55 COG1120 FepC ABC-type cobalami 99.1 1.2E-10 2.6E-15 100.8 5.0 63 16-81 11-75 (258)
56 KOG0736 Peroxisome assembly fa 99.1 7E-10 1.5E-14 106.9 10.2 110 26-137 426-607 (953)
57 PRK00080 ruvB Holliday junctio 99.1 1.1E-09 2.3E-14 98.3 10.8 102 31-134 51-221 (328)
58 TIGR00635 ruvB Holliday juncti 99.1 3.2E-09 6.9E-14 93.8 13.1 76 31-108 30-173 (305)
59 COG3839 MalK ABC-type sugar tr 99.0 4E-10 8.6E-15 101.1 6.4 117 22-144 18-151 (338)
60 COG1127 Ttg2A ABC-type transpo 99.0 1.1E-09 2.4E-14 93.3 7.3 114 14-130 15-137 (263)
61 COG1124 DppF ABC-type dipeptid 99.0 1E-09 2.2E-14 93.6 7.1 118 22-142 22-157 (252)
62 COG1126 GlnQ ABC-type polar am 99.0 8.3E-10 1.8E-14 92.8 5.6 74 12-89 7-83 (240)
63 COG0396 sufC Cysteine desulfur 99.0 7.7E-09 1.7E-13 87.6 11.2 73 20-95 17-91 (251)
64 COG2884 FtsE Predicted ATPase 99.0 4.8E-09 1E-13 86.7 9.4 72 14-89 9-85 (223)
65 COG1136 SalX ABC-type antimicr 98.9 2.9E-09 6.3E-14 90.5 7.8 66 21-89 19-89 (226)
66 TIGR02902 spore_lonB ATP-depen 98.9 1.1E-08 2.5E-13 97.5 12.1 43 63-108 235-277 (531)
67 PRK14962 DNA polymerase III su 98.9 1.3E-08 2.7E-13 95.7 10.4 75 30-107 35-189 (472)
68 PRK04195 replication factor C 98.9 3.7E-08 7.9E-13 92.9 13.5 76 31-108 39-174 (482)
69 COG1121 ZnuC ABC-type Mn/Zn tr 98.8 1.3E-09 2.8E-14 94.1 2.7 49 16-67 13-63 (254)
70 COG4619 ABC-type uncharacteriz 98.8 8.1E-09 1.8E-13 84.0 6.7 61 18-81 14-76 (223)
71 PRK06893 DNA replication initi 98.8 1.9E-08 4.1E-13 85.9 9.4 77 32-108 40-175 (229)
72 TIGR02903 spore_lon_C ATP-depe 98.8 8.1E-08 1.7E-12 93.1 14.8 38 68-108 330-367 (615)
73 COG3638 ABC-type phosphate/pho 98.8 1.2E-08 2.7E-13 86.7 7.8 61 18-81 15-77 (258)
74 TIGR01186 proV glycine betaine 98.8 1.1E-08 2.3E-13 93.2 8.0 60 18-80 4-65 (363)
75 PRK14956 DNA polymerase III su 98.8 3.1E-08 6.6E-13 92.7 10.6 74 31-107 40-193 (484)
76 TIGR02640 gas_vesic_GvpN gas v 98.8 9.2E-08 2E-12 83.3 12.9 43 64-109 153-200 (262)
77 PF05673 DUF815: Protein of un 98.8 9.6E-08 2.1E-12 82.0 12.6 97 3-108 33-208 (249)
78 PRK13342 recombination factor 98.8 5.4E-08 1.2E-12 90.1 11.8 74 32-108 37-165 (413)
79 COG1123 ATPase components of v 98.8 2.7E-08 5.7E-13 93.9 9.7 106 21-130 305-421 (539)
80 KOG0989 Replication factor C, 98.8 1.2E-08 2.6E-13 89.6 6.7 26 32-57 58-83 (346)
81 PRK14961 DNA polymerase III su 98.8 5.6E-08 1.2E-12 88.5 10.5 72 62-136 149-221 (363)
82 KOG0735 AAA+-type ATPase [Post 98.8 6.6E-08 1.4E-12 92.9 11.2 100 34-133 434-614 (952)
83 COG1131 CcmA ABC-type multidru 98.8 1.3E-08 2.7E-13 90.2 6.1 111 13-128 10-127 (293)
84 TIGR01650 PD_CobS cobaltochela 98.8 5.5E-08 1.2E-12 87.0 10.0 78 28-107 61-233 (327)
85 COG4604 CeuD ABC-type enteroch 98.7 3.6E-08 7.8E-13 82.1 7.6 124 11-146 5-155 (252)
86 TIGR01188 drrA daunorubicin re 98.7 2.8E-08 6E-13 88.2 7.4 53 19-74 5-59 (302)
87 cd03267 ABC_NatA_like Similar 98.7 3.6E-08 7.8E-13 84.4 7.8 60 8-70 22-83 (236)
88 PRK14964 DNA polymerase III su 98.7 6.2E-08 1.3E-12 91.2 10.0 44 62-108 146-189 (491)
89 cd03294 ABC_Pro_Gly_Bertaine T 98.7 5.7E-08 1.2E-12 84.8 9.0 65 10-77 27-93 (269)
90 PRK13537 nodulation ABC transp 98.7 3.6E-08 7.8E-13 87.8 7.7 67 17-88 17-85 (306)
91 PRK14960 DNA polymerase III su 98.7 7.7E-08 1.7E-12 92.9 10.3 103 30-135 36-219 (702)
92 PRK07003 DNA polymerase III su 98.7 1.4E-07 3E-12 92.2 12.1 76 30-108 37-192 (830)
93 PF07728 AAA_5: AAA domain (dy 98.7 2.5E-08 5.4E-13 78.0 5.8 27 33-59 1-27 (139)
94 cd03265 ABC_DrrA DrrA is the A 98.7 4.7E-08 1E-12 82.5 7.8 53 18-73 11-65 (220)
95 cd03295 ABC_OpuCA_Osmoprotecti 98.7 5.4E-08 1.2E-12 83.4 8.2 56 20-78 14-71 (242)
96 COG1116 TauB ABC-type nitrate/ 98.7 1.6E-08 3.4E-13 86.7 4.5 53 17-72 13-67 (248)
97 TIGR03265 PhnT2 putative 2-ami 98.7 2.8E-08 6E-13 90.3 6.4 58 18-78 15-74 (353)
98 cd03225 ABC_cobalt_CbiO_domain 98.7 5.3E-08 1.2E-12 81.5 7.7 56 20-78 14-71 (211)
99 PRK11308 dppF dipeptide transp 98.7 5.4E-08 1.2E-12 87.5 8.0 54 21-77 29-84 (327)
100 COG1118 CysA ABC-type sulfate/ 98.7 3.6E-08 7.9E-13 86.8 6.7 66 13-81 8-78 (345)
101 PRK06645 DNA polymerase III su 98.7 1.3E-07 2.9E-12 89.5 11.0 45 62-109 158-202 (507)
102 cd03218 ABC_YhbG The ABC trans 98.7 6.4E-08 1.4E-12 82.2 8.0 56 19-77 12-69 (232)
103 PHA02544 44 clamp loader, smal 98.7 1.5E-07 3.4E-12 83.5 10.8 73 31-106 43-172 (316)
104 PRK10247 putative ABC transpor 98.7 2.7E-08 5.8E-13 84.5 5.6 61 17-80 17-79 (225)
105 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.7 6.4E-08 1.4E-12 81.4 7.8 55 20-77 17-73 (218)
106 cd03266 ABC_NatA_sodium_export 98.7 7.7E-08 1.7E-12 81.0 8.3 51 21-74 19-71 (218)
107 cd03263 ABC_subfamily_A The AB 98.7 7.6E-08 1.6E-12 81.1 8.1 51 20-73 15-67 (220)
108 PRK11650 ugpC glycerol-3-phosp 98.7 4E-08 8.7E-13 89.3 6.7 57 19-78 16-74 (356)
109 PRK07940 DNA polymerase III su 98.7 8.8E-07 1.9E-11 81.6 15.5 80 23-105 28-187 (394)
110 PRK06620 hypothetical protein; 98.7 1.7E-07 3.7E-12 79.4 10.0 74 32-108 45-161 (214)
111 cd03264 ABC_drug_resistance_li 98.7 7.8E-08 1.7E-12 80.6 7.9 54 20-76 13-67 (211)
112 TIGR00960 3a0501s02 Type II (G 98.7 7.2E-08 1.6E-12 81.1 7.7 53 21-76 17-71 (216)
113 PRK12323 DNA polymerase III su 98.7 9.8E-08 2.1E-12 92.0 9.2 72 61-135 153-225 (700)
114 PRK10070 glycine betaine trans 98.7 8.5E-08 1.9E-12 88.4 8.5 60 16-78 37-98 (400)
115 PRK00149 dnaA chromosomal repl 98.7 1.4E-07 3E-12 88.2 10.1 125 32-158 149-348 (450)
116 PRK09452 potA putrescine/sperm 98.7 4.3E-08 9.3E-13 89.7 6.5 57 19-78 26-84 (375)
117 TIGR03608 L_ocin_972_ABC putat 98.7 3E-08 6.5E-13 82.7 5.0 53 18-73 9-63 (206)
118 PRK14958 DNA polymerase III su 98.7 1.4E-07 2.9E-12 89.6 9.9 76 30-108 37-192 (509)
119 PRK11432 fbpC ferric transport 98.6 4.8E-08 1E-12 88.6 6.5 58 18-78 17-76 (351)
120 PRK08691 DNA polymerase III su 98.6 2.1E-07 4.5E-12 90.5 11.0 105 29-136 36-221 (709)
121 cd03219 ABC_Mj1267_LivG_branch 98.6 9.1E-08 2E-12 81.5 7.6 58 18-78 11-70 (236)
122 TIGR03258 PhnT 2-aminoethylpho 98.6 5.6E-08 1.2E-12 88.5 6.6 56 19-77 17-76 (362)
123 TIGR02673 FtsE cell division A 98.6 1.4E-07 3E-12 79.2 8.5 55 20-77 15-71 (214)
124 TIGR03522 GldA_ABC_ATP gliding 98.6 7.2E-08 1.6E-12 85.6 7.1 54 18-74 13-68 (301)
125 TIGR03864 PQQ_ABC_ATP ABC tran 98.6 7.4E-08 1.6E-12 82.3 6.8 57 19-78 13-71 (236)
126 TIGR01166 cbiO cobalt transpor 98.6 1.1E-07 2.3E-12 78.5 7.6 51 19-72 4-56 (190)
127 PRK14952 DNA polymerase III su 98.6 2.1E-07 4.6E-12 89.4 10.7 45 61-108 147-191 (584)
128 PRK13536 nodulation factor exp 98.6 7.3E-08 1.6E-12 87.1 7.1 57 18-77 52-110 (340)
129 PRK14250 phosphate ABC transpo 98.6 9E-08 2E-12 82.1 7.1 60 19-81 15-76 (241)
130 TIGR02314 ABC_MetN D-methionin 98.6 1.2E-07 2.6E-12 85.8 8.2 55 21-78 19-75 (343)
131 cd03259 ABC_Carb_Solutes_like 98.6 9.2E-08 2E-12 80.3 7.0 56 18-76 11-68 (213)
132 PRK05563 DNA polymerase III su 98.6 2.3E-07 5E-12 89.0 10.6 76 30-108 37-192 (559)
133 TIGR01288 nodI ATP-binding ABC 98.6 1.1E-07 2.3E-12 84.5 7.7 52 18-72 15-68 (303)
134 PRK11000 maltose/maltodextrin 98.6 6.3E-08 1.4E-12 88.4 6.2 56 19-77 15-72 (369)
135 PHA02244 ATPase-like protein 98.6 2.3E-07 4.9E-12 84.3 9.7 63 31-96 119-263 (383)
136 TIGR00362 DnaA chromosomal rep 98.6 2E-07 4.3E-12 86.0 9.5 102 32-135 137-310 (405)
137 PLN03025 replication factor C 98.6 2.7E-07 5.8E-12 82.5 10.0 73 33-108 36-172 (319)
138 PRK14949 DNA polymerase III su 98.6 3.5E-07 7.5E-12 90.9 11.2 76 30-108 37-192 (944)
139 PRK15112 antimicrobial peptide 98.6 1.7E-07 3.6E-12 81.7 8.0 50 21-73 27-78 (267)
140 cd03301 ABC_MalK_N The N-termi 98.6 8.8E-08 1.9E-12 80.3 6.0 56 18-76 11-68 (213)
141 cd03216 ABC_Carb_Monos_I This 98.6 3.8E-08 8.2E-13 79.6 3.7 55 20-77 13-69 (163)
142 TIGR03410 urea_trans_UrtE urea 98.6 7.3E-08 1.6E-12 81.8 5.6 57 19-78 12-70 (230)
143 TIGR02397 dnaX_nterm DNA polym 98.6 3.2E-07 6.9E-12 82.6 10.0 72 62-136 147-219 (355)
144 PRK11022 dppD dipeptide transp 98.6 2.2E-07 4.7E-12 83.5 8.8 61 21-81 21-84 (326)
145 PRK15079 oligopeptide ABC tran 98.6 1.4E-07 3E-12 85.0 7.6 55 21-78 35-91 (331)
146 cd03269 ABC_putative_ATPase Th 98.6 1.4E-07 3E-12 79.0 7.1 50 19-71 12-63 (210)
147 cd03261 ABC_Org_Solvent_Resist 98.6 9.8E-08 2.1E-12 81.4 6.3 56 19-77 12-69 (235)
148 TIGR02315 ABC_phnC phosphonate 98.6 4.4E-08 9.6E-13 83.8 4.1 55 19-76 14-70 (243)
149 PRK08084 DNA replication initi 98.6 2.6E-07 5.5E-12 79.3 8.8 75 32-106 46-179 (235)
150 cd03292 ABC_FtsE_transporter F 98.6 1.8E-07 3.9E-12 78.5 7.6 55 20-77 14-70 (214)
151 TIGR02323 CP_lyasePhnK phospho 98.6 2.8E-07 6.1E-12 79.4 9.0 50 19-71 15-66 (253)
152 cd03254 ABCC_Glucan_exporter_l 98.6 1.6E-07 3.5E-12 79.6 7.4 57 21-80 17-75 (229)
153 PRK10908 cell division protein 98.6 2E-07 4.4E-12 78.8 7.9 55 20-77 15-71 (222)
154 TIGR02211 LolD_lipo_ex lipopro 98.6 1.8E-07 3.9E-12 78.9 7.6 54 21-77 19-74 (221)
155 TIGR03415 ABC_choXWV_ATP choli 98.6 2E-07 4.2E-12 85.5 8.3 54 13-69 30-85 (382)
156 cd03258 ABC_MetN_methionine_tr 98.6 1.1E-07 2.4E-12 80.9 6.2 54 21-77 19-74 (233)
157 COG0410 LivF ABC-type branched 98.6 2.7E-08 5.9E-13 84.3 2.3 67 12-81 8-76 (237)
158 PRK11629 lolD lipoprotein tran 98.6 1.8E-07 4E-12 79.7 7.5 54 21-77 23-78 (233)
159 COG4555 NatA ABC-type Na+ tran 98.6 4.9E-07 1.1E-11 75.5 9.6 69 13-86 7-78 (245)
160 PRK11701 phnK phosphonate C-P 98.6 2.5E-07 5.5E-12 80.0 8.4 50 19-71 18-69 (258)
161 PRK13632 cbiO cobalt transport 98.6 2.2E-07 4.8E-12 81.1 8.0 59 20-81 22-82 (271)
162 cd03293 ABC_NrtD_SsuB_transpor 98.6 1.1E-07 2.4E-12 80.2 5.9 49 20-71 17-67 (220)
163 PRK11153 metN DL-methionine tr 98.6 2.1E-07 4.6E-12 84.1 8.0 56 20-78 18-75 (343)
164 PRK11607 potG putrescine trans 98.6 1E-07 2.3E-12 87.2 6.1 56 19-77 31-88 (377)
165 PRK13341 recombination factor 98.6 2E-07 4.4E-12 91.6 8.5 74 32-108 53-182 (725)
166 cd03224 ABC_TM1139_LivF_branch 98.6 1.7E-07 3.6E-12 79.1 6.9 57 19-78 12-70 (222)
167 COG4181 Predicted ABC-type tra 98.6 1.8E-07 3.8E-12 76.5 6.6 116 20-138 23-158 (228)
168 PRK13538 cytochrome c biogenes 98.5 1.1E-07 2.3E-12 79.6 5.5 54 19-75 13-68 (204)
169 PRK13637 cbiO cobalt transport 98.5 2E-07 4.4E-12 82.2 7.5 52 21-75 21-74 (287)
170 PRK14951 DNA polymerase III su 98.5 5.4E-07 1.2E-11 87.1 11.0 71 62-135 154-225 (618)
171 PRK10584 putative ABC transpor 98.5 2.6E-07 5.7E-12 78.3 8.0 54 22-78 25-80 (228)
172 PRK07994 DNA polymerase III su 98.5 5.2E-07 1.1E-11 87.5 10.7 75 30-107 37-191 (647)
173 PRK14957 DNA polymerase III su 98.5 5.4E-07 1.2E-11 86.0 10.6 44 61-107 148-191 (546)
174 COG4559 ABC-type hemin transpo 98.5 9.8E-08 2.1E-12 80.3 4.9 62 17-81 11-74 (259)
175 COG0714 MoxR-like ATPases [Gen 98.5 1E-06 2.2E-11 79.1 11.8 78 28-107 40-203 (329)
176 TIGR03420 DnaA_homol_Hda DnaA 98.5 3.8E-07 8.2E-12 76.9 8.5 26 31-56 38-63 (226)
177 TIGR02639 ClpA ATP-dependent C 98.5 2.6E-07 5.7E-12 91.3 8.6 74 31-107 203-358 (731)
178 PRK05896 DNA polymerase III su 98.5 4.5E-07 9.7E-12 87.1 9.9 76 29-107 36-191 (605)
179 TIGR02769 nickel_nikE nickel i 98.5 2.9E-07 6.3E-12 80.1 8.0 55 20-77 24-80 (265)
180 COG4586 ABC-type uncharacteriz 98.5 3.6E-07 7.8E-12 79.5 8.3 97 21-123 38-142 (325)
181 PRK13650 cbiO cobalt transport 98.5 2.6E-07 5.6E-12 81.1 7.6 65 21-89 21-87 (279)
182 KOG2028 ATPase related to the 98.5 4.7E-07 1E-11 81.6 9.2 71 32-105 163-292 (554)
183 PRK13548 hmuV hemin importer A 98.5 1.9E-07 4E-12 81.0 6.6 59 18-79 13-73 (258)
184 cd03226 ABC_cobalt_CbiO_domain 98.5 6E-08 1.3E-12 81.0 3.3 50 20-72 13-64 (205)
185 COG0411 LivG ABC-type branched 98.5 3.2E-08 6.9E-13 84.5 1.6 67 12-81 9-77 (250)
186 PRK14963 DNA polymerase III su 98.5 1.3E-06 2.8E-11 82.9 12.6 43 62-107 146-188 (504)
187 PRK13647 cbiO cobalt transport 98.5 2.9E-07 6.3E-12 80.6 7.8 58 20-80 18-77 (274)
188 PRK10419 nikE nickel transport 98.5 3.3E-07 7.1E-12 80.0 8.0 55 20-77 25-81 (268)
189 PRK14953 DNA polymerase III su 98.5 7.3E-07 1.6E-11 84.2 10.9 45 62-109 149-193 (486)
190 PRK07764 DNA polymerase III su 98.5 1E-06 2.2E-11 87.9 12.4 45 61-108 149-193 (824)
191 PRK13649 cbiO cobalt transport 98.5 3.5E-07 7.6E-12 80.1 8.2 51 21-74 21-73 (280)
192 PRK13651 cobalt transporter AT 98.5 3.7E-07 7.9E-12 81.3 8.4 45 21-68 21-67 (305)
193 cd03257 ABC_NikE_OppD_transpor 98.5 3.8E-07 8.2E-12 77.1 8.0 53 21-76 19-73 (228)
194 PRK10895 lipopolysaccharide AB 98.5 1.9E-07 4.2E-12 79.8 6.3 57 18-77 14-72 (241)
195 TIGR01978 sufC FeS assembly AT 98.5 4E-07 8.6E-12 77.8 8.2 58 19-79 12-73 (243)
196 PRK09473 oppD oligopeptide tra 98.5 7.2E-07 1.6E-11 80.3 10.2 60 21-80 30-91 (330)
197 cd03296 ABC_CysA_sulfate_impor 98.5 1.7E-07 3.8E-12 80.1 5.9 56 18-76 13-70 (239)
198 PRK09087 hypothetical protein; 98.5 6.3E-07 1.4E-11 76.6 9.2 77 33-109 46-168 (226)
199 PRK11248 tauB taurine transpor 98.5 1.8E-07 3.9E-12 81.1 5.9 49 19-70 13-63 (255)
200 cd03262 ABC_HisP_GlnQ_permease 98.5 3.7E-07 7.9E-12 76.5 7.6 51 19-72 12-64 (213)
201 PRK08903 DnaA regulatory inact 98.5 7.9E-07 1.7E-11 75.4 9.7 26 30-55 41-66 (227)
202 TIGR03411 urea_trans_UrtD urea 98.5 9.5E-08 2.1E-12 81.7 4.1 58 18-78 13-72 (242)
203 PRK13635 cbiO cobalt transport 98.5 2.9E-07 6.2E-12 80.9 7.2 57 21-80 21-79 (279)
204 PRK14969 DNA polymerase III su 98.5 4.8E-07 1.1E-11 86.2 9.2 75 30-107 37-191 (527)
205 PRK09536 btuD corrinoid ABC tr 98.5 1.5E-07 3.3E-12 86.8 5.5 62 17-81 13-76 (402)
206 PRK11034 clpA ATP-dependent Cl 98.5 2E-06 4.4E-11 85.0 13.7 74 33-108 490-667 (758)
207 PRK07133 DNA polymerase III su 98.5 7.6E-07 1.6E-11 87.1 10.5 75 30-107 39-190 (725)
208 cd03215 ABC_Carb_Monos_II This 98.5 1.7E-07 3.6E-12 77.1 5.2 53 22-77 15-69 (182)
209 PRK08118 topology modulation p 98.5 4E-07 8.7E-12 74.2 7.3 72 33-107 3-101 (167)
210 PRK10865 protein disaggregatio 98.5 5E-06 1.1E-10 83.5 16.6 74 31-107 199-354 (857)
211 cd03260 ABC_PstB_phosphate_tra 98.5 4.4E-07 9.4E-12 76.9 7.7 55 19-76 12-73 (227)
212 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.5 3.1E-07 6.8E-12 78.0 6.8 58 8-68 23-82 (224)
213 PRK11300 livG leucine/isoleuci 98.5 1.9E-07 4.2E-12 80.4 5.5 60 19-81 17-78 (255)
214 COG4608 AppF ABC-type oligopep 98.5 3.1E-07 6.8E-12 79.7 6.7 53 21-76 27-81 (268)
215 TIGR02639 ClpA ATP-dependent C 98.5 1.3E-06 2.9E-11 86.3 12.1 32 75-108 632-663 (731)
216 cd03228 ABCC_MRP_Like The MRP 98.5 1.6E-07 3.5E-12 76.4 4.7 56 21-79 16-73 (171)
217 PRK13648 cbiO cobalt transport 98.5 5.4E-07 1.2E-11 78.6 8.2 58 21-81 23-82 (269)
218 TIGR03005 ectoine_ehuA ectoine 98.5 4.3E-07 9.4E-12 78.3 7.4 52 19-73 12-65 (252)
219 cd03229 ABC_Class3 This class 98.5 7.6E-08 1.6E-12 78.8 2.5 54 20-76 13-68 (178)
220 PRK13644 cbiO cobalt transport 98.5 3.6E-07 7.7E-12 80.0 6.8 54 20-76 15-70 (274)
221 PRK14965 DNA polymerase III su 98.5 7.1E-07 1.5E-11 86.0 9.5 76 29-107 36-191 (576)
222 PRK10851 sulfate/thiosulfate t 98.5 1.8E-07 3.9E-12 85.0 5.1 56 19-77 14-71 (353)
223 PRK08727 hypothetical protein; 98.5 6.6E-07 1.4E-11 76.6 8.2 74 32-107 42-175 (233)
224 PRK14086 dnaA chromosomal repl 98.5 1.1E-06 2.3E-11 84.6 10.5 86 33-118 316-470 (617)
225 cd03256 ABC_PhnC_transporter A 98.5 2E-07 4.4E-12 79.5 5.0 54 20-76 14-69 (241)
226 PRK13638 cbiO cobalt transport 98.5 5.5E-07 1.2E-11 78.6 7.8 52 18-72 12-65 (271)
227 cd03300 ABC_PotA_N PotA is an 98.5 4.5E-07 9.7E-12 77.3 7.1 56 19-77 12-69 (232)
228 PRK11614 livF leucine/isoleuci 98.5 2.3E-07 4.9E-12 79.2 5.2 57 19-78 17-75 (237)
229 cd03246 ABCC_Protease_Secretio 98.5 1.7E-07 3.7E-12 76.4 4.3 55 21-78 16-72 (173)
230 PRK12422 chromosomal replicati 98.5 8.1E-07 1.8E-11 83.1 9.3 78 32-111 142-288 (445)
231 cd03268 ABC_BcrA_bacitracin_re 98.5 6.4E-07 1.4E-11 74.9 7.9 52 19-73 12-65 (208)
232 PRK11176 lipid transporter ATP 98.5 2.7E-07 5.9E-12 88.6 6.3 59 20-81 356-416 (582)
233 COG4133 CcmA ABC-type transpor 98.5 3.9E-07 8.5E-12 75.2 6.2 62 13-77 8-71 (209)
234 PRK14959 DNA polymerase III su 98.5 1E-06 2.2E-11 85.0 10.0 75 30-107 37-191 (624)
235 PRK13633 cobalt transporter AT 98.4 5E-07 1.1E-11 79.3 7.4 51 21-74 24-76 (280)
236 PF07726 AAA_3: ATPase family 98.4 2.1E-07 4.7E-12 72.4 4.4 26 34-59 2-27 (131)
237 PRK07261 topology modulation p 98.4 5.5E-07 1.2E-11 73.6 7.0 71 34-107 3-101 (171)
238 PRK14088 dnaA chromosomal repl 98.4 5.5E-07 1.2E-11 84.1 7.9 105 32-136 131-306 (440)
239 cd00009 AAA The AAA+ (ATPases 98.4 1.2E-06 2.7E-11 67.0 8.6 25 31-55 19-43 (151)
240 PRK13643 cbiO cobalt transport 98.4 5.9E-07 1.3E-11 79.2 7.6 49 21-72 20-70 (288)
241 COG1122 CbiO ABC-type cobalt t 98.4 4.3E-07 9.4E-12 78.0 6.5 68 21-92 18-88 (235)
242 TIGR01184 ntrCD nitrate transp 98.4 5.6E-07 1.2E-11 76.7 7.2 48 24-74 2-51 (230)
243 PRK13407 bchI magnesium chelat 98.4 4E-06 8.7E-11 75.6 12.9 44 62-107 171-216 (334)
244 cd03299 ABC_ModC_like Archeal 98.4 7E-07 1.5E-11 76.3 7.7 53 22-77 14-68 (235)
245 PRK10261 glutathione transport 98.4 6.4E-07 1.4E-11 87.1 8.3 54 21-77 338-393 (623)
246 cd03235 ABC_Metallic_Cations A 98.4 2E-07 4.4E-12 78.2 4.2 51 17-70 9-61 (213)
247 PRK13641 cbiO cobalt transport 98.4 8E-07 1.7E-11 78.3 8.2 50 21-73 21-72 (287)
248 PRK13631 cbiO cobalt transport 98.4 6E-07 1.3E-11 80.5 7.5 48 21-71 40-89 (320)
249 PRK14970 DNA polymerase III su 98.4 2.4E-06 5.1E-11 77.7 11.5 76 29-107 37-180 (367)
250 COG4172 ABC-type uncharacteriz 98.4 1E-06 2.3E-11 80.3 9.0 126 21-150 301-438 (534)
251 COG1135 AbcC ABC-type metal io 98.4 5.1E-07 1.1E-11 79.7 6.8 67 20-89 19-89 (339)
252 PRK06647 DNA polymerase III su 98.4 1.4E-06 3E-11 83.7 10.3 75 30-107 37-191 (563)
253 COG2812 DnaX DNA polymerase II 98.4 8.8E-07 1.9E-11 83.6 8.7 77 29-108 36-192 (515)
254 PRK11831 putative ABC transpor 98.4 5.7E-07 1.2E-11 78.5 7.0 56 19-77 19-76 (269)
255 PRK13652 cbiO cobalt transport 98.4 7.7E-07 1.7E-11 78.0 7.9 54 21-77 18-73 (277)
256 PRK13646 cbiO cobalt transport 98.4 6.3E-07 1.4E-11 78.9 7.4 49 21-72 21-71 (286)
257 PRK13640 cbiO cobalt transport 98.4 6.7E-07 1.5E-11 78.6 7.5 57 21-77 21-79 (282)
258 PRK13634 cbiO cobalt transport 98.4 6.4E-07 1.4E-11 79.1 7.4 50 21-73 21-72 (290)
259 TIGR02770 nickel_nikD nickel i 98.4 7.4E-07 1.6E-11 75.8 7.5 47 23-72 2-54 (230)
260 TIGR01189 ccmA heme ABC export 98.4 3.5E-07 7.7E-12 76.0 5.4 55 19-76 12-68 (198)
261 cd03245 ABCC_bacteriocin_expor 98.4 3.8E-07 8.1E-12 76.9 5.6 54 21-77 18-73 (220)
262 PRK14247 phosphate ABC transpo 98.4 7E-07 1.5E-11 76.8 7.4 64 18-81 14-81 (250)
263 PRK09111 DNA polymerase III su 98.4 1.8E-06 3.9E-11 83.4 10.9 44 62-108 162-205 (598)
264 PRK10790 putative multidrug tr 98.4 2.3E-07 5E-12 89.4 4.6 58 21-81 355-414 (592)
265 COG0488 Uup ATPase components 98.4 3.9E-07 8.4E-12 86.7 5.9 117 20-152 335-453 (530)
266 PRK13645 cbiO cobalt transport 98.4 7.3E-07 1.6E-11 78.6 7.3 48 21-71 25-74 (289)
267 COG0464 SpoVK ATPases of the A 98.4 2.6E-06 5.6E-11 80.5 11.5 119 18-137 5-194 (494)
268 TIGR02324 CP_lyasePhnL phospho 98.4 1.5E-06 3.2E-11 73.5 8.9 45 21-68 22-68 (224)
269 CHL00131 ycf16 sulfate ABC tra 98.4 7.6E-07 1.6E-11 76.6 7.2 58 20-80 20-81 (252)
270 COG4167 SapF ABC-type antimicr 98.4 1.3E-06 2.8E-11 72.2 8.1 80 21-104 27-108 (267)
271 PRK09493 glnQ glutamine ABC tr 98.4 7.1E-07 1.5E-11 76.3 6.9 52 19-73 13-66 (240)
272 PRK11331 5-methylcytosine-spec 98.4 1.9E-06 4.2E-11 80.1 10.2 27 30-56 193-219 (459)
273 PRK10619 histidine/lysine/argi 98.4 3.1E-07 6.8E-12 79.4 4.7 52 18-72 16-69 (257)
274 cd03289 ABCC_CFTR2 The CFTR su 98.4 5.1E-07 1.1E-11 79.3 6.1 58 20-81 17-76 (275)
275 PRK11264 putative amino-acid A 98.4 1.1E-06 2.3E-11 75.6 7.9 52 18-72 14-67 (250)
276 TIGR00764 lon_rel lon-related 98.4 4.4E-06 9.5E-11 81.0 12.9 28 31-58 37-64 (608)
277 PRK08451 DNA polymerase III su 98.4 2.4E-06 5.2E-11 81.4 10.8 44 62-108 147-190 (535)
278 TIGR03873 F420-0_ABC_ATP propo 98.4 6.4E-07 1.4E-11 77.4 6.4 61 18-81 12-74 (256)
279 cd03231 ABC_CcmA_heme_exporter 98.4 3.4E-07 7.4E-12 76.4 4.5 55 18-75 11-67 (201)
280 cd03252 ABCC_Hemolysin The ABC 98.4 6.1E-07 1.3E-11 76.5 6.2 59 20-81 15-75 (237)
281 COG0444 DppD ABC-type dipeptid 98.4 2.2E-06 4.7E-11 76.1 9.7 107 21-127 19-140 (316)
282 cd03247 ABCC_cytochrome_bd The 98.4 1.8E-07 3.8E-12 76.6 2.6 52 21-75 16-69 (178)
283 cd03230 ABC_DR_subfamily_A Thi 98.4 2.8E-07 6E-12 75.1 3.7 52 21-75 14-67 (173)
284 PRK11034 clpA ATP-dependent Cl 98.4 1.1E-06 2.4E-11 86.9 8.4 45 60-107 313-362 (758)
285 PRK11174 cysteine/glutathione 98.4 3E-07 6.6E-12 88.4 4.4 59 19-81 362-422 (588)
286 TIGR03345 VI_ClpV1 type VI sec 98.4 8.3E-07 1.8E-11 89.0 7.6 44 60-106 314-362 (852)
287 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.4 7.8E-07 1.7E-11 75.9 6.4 55 21-78 17-73 (238)
288 COG2274 SunT ABC-type bacterio 98.4 4.9E-07 1.1E-11 88.7 5.8 60 20-82 486-547 (709)
289 cd03217 ABC_FeS_Assembly ABC-t 98.4 4.2E-07 9.1E-12 75.8 4.6 59 19-80 12-74 (200)
290 PRK13636 cbiO cobalt transport 98.4 1.3E-06 2.7E-11 76.9 7.8 50 20-72 19-70 (283)
291 TIGR00678 holB DNA polymerase 98.4 3.3E-06 7.2E-11 69.5 9.9 42 62-106 126-167 (188)
292 PRK13540 cytochrome c biogenes 98.4 5.8E-07 1.3E-11 74.9 5.4 52 19-73 13-66 (200)
293 cd03253 ABCC_ATM1_transporter 98.4 6.2E-07 1.3E-11 76.3 5.7 59 20-81 14-74 (236)
294 PRK13543 cytochrome c biogenes 98.4 7E-07 1.5E-11 75.2 5.7 52 18-72 22-75 (214)
295 TIGR03797 NHPM_micro_ABC2 NHPM 98.4 6.3E-07 1.4E-11 87.9 6.2 59 20-81 466-526 (686)
296 TIGR00968 3a0106s01 sulfate AB 98.4 8.4E-07 1.8E-11 75.9 6.3 55 19-76 12-68 (237)
297 PRK13642 cbiO cobalt transport 98.4 1.1E-06 2.4E-11 77.0 7.2 53 22-77 22-76 (277)
298 TIGR02868 CydC thiol reductant 98.4 3.6E-07 7.8E-12 86.9 4.3 57 21-81 349-407 (529)
299 PRK12402 replication factor C 98.4 3.7E-06 7.9E-11 75.0 10.6 44 62-108 155-198 (337)
300 TIGR01193 bacteriocin_ABC ABC- 98.3 6.8E-07 1.5E-11 87.9 6.3 59 20-81 487-547 (708)
301 PRK10253 iron-enterobactin tra 98.3 5.7E-07 1.2E-11 78.3 5.0 61 18-81 18-80 (265)
302 PRK09700 D-allose transporter 98.3 2.9E-07 6.2E-12 87.3 3.4 60 17-79 15-76 (510)
303 cd03236 ABC_RNaseL_inhibitor_d 98.3 8.1E-07 1.8E-11 77.2 5.9 42 21-66 15-58 (255)
304 PRK11231 fecE iron-dicitrate t 98.3 6.4E-07 1.4E-11 77.4 5.3 60 18-80 13-74 (255)
305 TIGR02982 heterocyst_DevA ABC 98.3 1.7E-06 3.6E-11 73.1 7.7 55 20-77 18-74 (220)
306 PRK06305 DNA polymerase III su 98.3 3.8E-06 8.2E-11 78.7 10.7 44 61-107 150-193 (451)
307 PRK15093 antimicrobial peptide 98.3 9.4E-07 2E-11 79.5 6.5 59 21-79 21-82 (330)
308 PRK09580 sufC cysteine desulfu 98.3 2E-06 4.3E-11 73.7 8.2 60 19-81 13-76 (248)
309 PRK14269 phosphate ABC transpo 98.3 5.4E-07 1.2E-11 77.4 4.6 61 17-77 12-74 (246)
310 PF00308 Bac_DnaA: Bacterial d 98.3 2.3E-06 5E-11 72.7 8.4 81 33-113 36-185 (219)
311 PRK10575 iron-hydroxamate tran 98.3 5.6E-07 1.2E-11 78.3 4.8 57 19-78 23-81 (265)
312 PRK15439 autoinducer 2 ABC tra 98.3 5.4E-07 1.2E-11 85.5 5.0 60 18-80 22-83 (510)
313 PRK00440 rfc replication facto 98.3 4.6E-06 1E-10 73.7 10.6 74 33-109 40-176 (319)
314 cd03369 ABCC_NFT1 Domain 2 of 98.3 5E-07 1.1E-11 75.6 4.2 55 21-78 22-78 (207)
315 KOG0058 Peptide exporter, ABC 98.3 6.4E-07 1.4E-11 86.5 5.4 58 21-81 482-541 (716)
316 TIGR03796 NHPM_micro_ABC1 NHPM 98.3 5.7E-07 1.2E-11 88.5 5.2 59 20-81 492-552 (710)
317 PRK11124 artP arginine transpo 98.3 7.1E-07 1.5E-11 76.4 5.2 51 18-71 13-65 (242)
318 COG1224 TIP49 DNA helicase TIP 98.3 3.4E-06 7.3E-11 75.9 9.5 31 29-59 63-93 (450)
319 PRK10261 glutathione transport 98.3 1.8E-06 3.9E-11 83.9 8.4 44 21-67 30-75 (623)
320 PRK10744 pstB phosphate transp 98.3 1.8E-06 3.9E-11 74.8 7.6 54 19-72 25-82 (260)
321 cd03298 ABC_ThiQ_thiamine_tran 98.3 1.2E-06 2.7E-11 73.3 6.4 50 25-77 16-67 (211)
322 PRK11160 cysteine/glutathione 98.3 9.9E-07 2.1E-11 84.9 6.4 58 21-81 354-413 (574)
323 PRK14267 phosphate ABC transpo 98.3 2.6E-06 5.7E-11 73.4 8.4 55 18-72 15-73 (253)
324 PF06068 TIP49: TIP49 C-termin 98.3 2.8E-06 6E-11 77.0 8.8 30 30-59 49-78 (398)
325 COG2607 Predicted ATPase (AAA+ 98.3 9.3E-06 2E-10 69.6 11.5 95 4-107 67-239 (287)
326 PRK05642 DNA replication initi 98.3 3.1E-06 6.6E-11 72.6 8.7 75 32-106 46-178 (234)
327 CHL00095 clpC Clp protease ATP 98.3 1.7E-05 3.6E-10 79.6 15.1 74 29-105 198-352 (821)
328 PRK11247 ssuB aliphatic sulfon 98.3 6.7E-07 1.5E-11 77.7 4.6 47 18-67 23-71 (257)
329 TIGR02928 orc1/cdc6 family rep 98.3 1.4E-05 3.1E-10 72.2 13.4 45 62-108 165-213 (365)
330 cd03214 ABC_Iron-Siderophores_ 98.3 4.5E-07 9.7E-12 74.4 3.2 56 20-78 12-69 (180)
331 PRK13541 cytochrome c biogenes 98.3 1E-06 2.3E-11 73.0 5.4 49 22-74 16-66 (195)
332 PRK11147 ABC transporter ATPas 98.3 8.8E-07 1.9E-11 86.3 5.7 39 20-58 332-372 (635)
333 PRK14948 DNA polymerase III su 98.3 7.7E-06 1.7E-10 79.4 12.1 28 30-57 37-64 (620)
334 PRK15134 microcin C ABC transp 98.3 2.3E-06 5E-11 81.5 8.3 53 21-77 300-354 (529)
335 PRK14235 phosphate transporter 98.3 1.5E-06 3.4E-11 75.6 6.6 54 19-72 31-88 (267)
336 PRK14955 DNA polymerase III su 98.3 3E-06 6.5E-11 78.1 8.8 28 30-57 37-64 (397)
337 TIGR02203 MsbA_lipidA lipid A 98.3 1.3E-06 2.8E-11 83.7 6.4 58 21-81 346-405 (571)
338 TIGR02142 modC_ABC molybdenum 98.3 1.9E-06 4.2E-11 78.2 7.2 45 25-72 15-61 (354)
339 PRK14950 DNA polymerase III su 98.3 5.8E-06 1.3E-10 79.9 10.8 43 62-107 150-192 (585)
340 PRK14259 phosphate ABC transpo 98.3 1.9E-06 4.2E-11 75.2 6.7 38 19-56 25-64 (269)
341 TIGR03375 type_I_sec_LssB type 98.3 1.6E-06 3.4E-11 85.2 6.8 58 21-81 479-538 (694)
342 TIGR02857 CydD thiol reductant 98.3 1.2E-06 2.6E-11 83.2 5.8 58 21-81 336-395 (529)
343 PRK14954 DNA polymerase III su 98.3 6.5E-06 1.4E-10 79.8 10.8 43 62-107 157-199 (620)
344 PRK10636 putative ABC transpor 98.3 7.8E-07 1.7E-11 86.7 4.4 39 20-58 325-365 (638)
345 cd03244 ABCC_MRP_domain2 Domai 98.3 1E-06 2.2E-11 74.2 4.6 57 21-80 18-76 (221)
346 PRK14242 phosphate transporter 98.3 3.1E-06 6.8E-11 72.9 7.7 55 18-72 17-75 (253)
347 PRK03695 vitamin B12-transport 98.3 2.2E-06 4.7E-11 73.9 6.6 56 22-81 11-68 (248)
348 PRK10762 D-ribose transporter 98.3 1E-06 2.2E-11 83.3 5.0 58 17-77 14-73 (501)
349 PRK13657 cyclic beta-1,2-gluca 98.2 1.5E-06 3.3E-11 83.7 6.1 59 20-81 348-408 (588)
350 PRK05707 DNA polymerase III su 98.2 7.1E-06 1.5E-10 73.9 10.0 43 61-106 135-177 (328)
351 PRK14273 phosphate ABC transpo 98.2 2.3E-06 5.1E-11 73.8 6.7 40 18-57 18-59 (254)
352 PRK13539 cytochrome c biogenes 98.2 8.7E-07 1.9E-11 74.3 3.9 50 19-71 14-65 (207)
353 TIGR00972 3a0107s01c2 phosphat 98.2 4.7E-06 1E-10 71.6 8.5 38 20-57 14-53 (247)
354 TIGR00958 3a01208 Conjugate Tr 98.2 1.3E-06 2.7E-11 86.2 5.6 58 21-81 495-554 (711)
355 PRK14241 phosphate transporter 98.2 4.1E-06 9E-11 72.4 8.1 54 19-72 16-73 (258)
356 PRK14240 phosphate transporter 98.2 2.5E-06 5.5E-11 73.3 6.7 54 19-72 15-72 (250)
357 TIGR01846 type_I_sec_HlyB type 98.2 2.3E-06 5E-11 84.1 7.0 58 21-81 471-530 (694)
358 PRK14271 phosphate ABC transpo 98.2 2.1E-06 4.7E-11 75.2 6.1 59 17-75 31-93 (276)
359 PF00005 ABC_tran: ABC transpo 98.2 2.6E-07 5.7E-12 71.8 0.2 55 24-81 2-58 (137)
360 PRK10771 thiQ thiamine transpo 98.2 2.8E-06 6E-11 72.3 6.5 50 25-77 17-68 (232)
361 PRK11144 modC molybdate transp 98.2 1.8E-06 3.9E-11 78.4 5.6 44 25-71 16-61 (352)
362 COG1132 MdlB ABC-type multidru 98.2 1.9E-06 4.2E-11 82.6 6.2 63 20-86 342-406 (567)
363 TIGR01194 cyc_pep_trnsptr cycl 98.2 2.3E-06 4.9E-11 82.1 6.5 57 22-81 357-415 (555)
364 PRK14248 phosphate ABC transpo 98.2 4E-06 8.7E-11 73.0 7.5 38 19-56 33-72 (268)
365 TIGR02633 xylG D-xylose ABC tr 98.2 1.8E-06 3.9E-11 81.6 5.7 57 18-77 12-72 (500)
366 PRK10789 putative multidrug tr 98.2 1.8E-06 3.9E-11 83.0 5.7 58 21-81 329-388 (569)
367 cd03248 ABCC_TAP TAP, the Tran 98.2 1.2E-06 2.6E-11 74.2 3.9 55 21-78 28-84 (226)
368 PRK14263 phosphate ABC transpo 98.2 1.4E-06 3E-11 75.8 4.4 56 17-72 18-77 (261)
369 PRK15134 microcin C ABC transp 98.2 5.7E-06 1.2E-10 78.8 9.0 56 21-76 23-82 (529)
370 cd03251 ABCC_MsbA MsbA is an e 98.2 1E-06 2.2E-11 74.9 3.5 54 21-77 16-71 (234)
371 TIGR03740 galliderm_ABC gallid 98.2 4E-06 8.6E-11 70.9 7.0 49 19-70 12-62 (223)
372 PRK13949 shikimate kinase; Pro 98.2 4.6E-06 9.9E-11 68.1 7.1 27 33-59 3-29 (169)
373 PRK13639 cbiO cobalt transport 98.2 4.2E-06 9.2E-11 73.2 7.4 49 21-72 16-66 (275)
374 cd03233 ABC_PDR_domain1 The pl 98.2 8.2E-07 1.8E-11 74.2 2.7 54 20-76 20-78 (202)
375 COG1137 YhbG ABC-type (unclass 98.2 8.4E-07 1.8E-11 74.1 2.7 72 11-87 8-81 (243)
376 PRK13549 xylose transporter AT 98.2 2E-06 4.4E-11 81.4 5.6 58 17-77 15-76 (506)
377 KOG0055 Multidrug/pheromone ex 98.2 2.2E-06 4.8E-11 87.2 6.1 66 21-90 367-434 (1228)
378 COG0703 AroK Shikimate kinase 98.2 2.7E-06 5.8E-11 69.5 5.5 28 32-59 3-30 (172)
379 PRK13765 ATP-dependent proteas 98.2 2.1E-05 4.6E-10 76.5 12.5 28 31-58 50-77 (637)
380 TIGR03346 chaperone_ClpB ATP-d 98.2 5.8E-06 1.3E-10 83.1 9.0 42 62-106 302-348 (852)
381 PRK14256 phosphate ABC transpo 98.2 3.7E-06 8.1E-11 72.4 6.6 38 19-56 16-55 (252)
382 TIGR01277 thiQ thiamine ABC tr 98.2 3.9E-06 8.5E-11 70.5 6.5 48 23-73 14-63 (213)
383 PRK13547 hmuV hemin importer A 98.2 3E-06 6.4E-11 74.3 5.9 64 18-81 12-82 (272)
384 COG4136 ABC-type uncharacteriz 98.2 7.4E-07 1.6E-11 71.5 1.9 65 17-81 12-78 (213)
385 PRK09700 D-allose transporter 98.2 1.8E-06 3.9E-11 81.8 4.8 48 22-72 278-327 (510)
386 PRK14270 phosphate ABC transpo 98.2 4.3E-06 9.3E-11 72.0 6.7 54 19-72 16-73 (251)
387 PRK10636 putative ABC transpor 98.2 1.1E-06 2.4E-11 85.7 3.3 49 17-68 11-61 (638)
388 PRK09984 phosphonate/organopho 98.2 4E-06 8.7E-11 72.7 6.5 55 18-72 15-71 (262)
389 PRK10418 nikD nickel transport 98.2 4.3E-06 9.4E-11 72.2 6.7 50 20-72 16-71 (254)
390 TIGR01842 type_I_sec_PrtD type 98.2 3E-06 6.4E-11 81.0 6.2 58 21-81 332-391 (544)
391 PRK11288 araG L-arabinose tran 98.2 1.6E-06 3.6E-11 82.0 4.4 49 21-72 267-317 (501)
392 PRK13549 xylose transporter AT 98.2 2.9E-06 6.3E-11 80.4 6.1 49 21-72 276-327 (506)
393 PRK14268 phosphate ABC transpo 98.2 5.6E-06 1.2E-10 71.7 7.4 39 19-57 24-64 (258)
394 cd03290 ABCC_SUR1_N The SUR do 98.2 1.3E-06 2.8E-11 73.6 3.3 54 20-76 14-69 (218)
395 PRK13531 regulatory ATPase Rav 98.2 8.7E-06 1.9E-10 76.5 9.0 49 7-55 12-63 (498)
396 PRK14971 DNA polymerase III su 98.2 1.4E-05 3E-10 77.7 10.7 44 62-108 151-194 (614)
397 PF01078 Mg_chelatase: Magnesi 98.2 2.6E-06 5.7E-11 71.5 5.0 26 32-57 23-48 (206)
398 PRK10938 putative molybdenum t 98.2 4.1E-06 8.9E-11 79.0 6.8 57 17-76 13-71 (490)
399 PRK05564 DNA polymerase III su 98.2 4E-05 8.7E-10 68.3 12.8 75 29-106 24-164 (313)
400 PRK10982 galactose/methyl gala 98.2 2.1E-06 4.5E-11 81.0 4.8 57 17-76 8-66 (491)
401 PRK14254 phosphate ABC transpo 98.2 7.5E-06 1.6E-10 72.2 8.0 52 19-72 51-108 (285)
402 PRK09862 putative ATP-dependen 98.2 4.2E-06 9E-11 79.3 6.7 39 18-56 195-235 (506)
403 KOG0055 Multidrug/pheromone ex 98.1 7.4E-06 1.6E-10 83.4 8.8 143 21-170 1004-1171(1228)
404 PRK15439 autoinducer 2 ABC tra 98.1 2.9E-06 6.2E-11 80.6 5.6 54 22-78 278-333 (510)
405 PRK10522 multidrug transporter 98.1 4.4E-06 9.6E-11 79.9 6.8 58 21-81 337-396 (547)
406 PRK14274 phosphate ABC transpo 98.1 5.2E-06 1.1E-10 71.9 6.6 54 19-72 24-81 (259)
407 smart00382 AAA ATPases associa 98.1 2.7E-06 5.9E-11 64.3 4.3 37 32-70 3-39 (148)
408 PRK00411 cdc6 cell division co 98.1 7.3E-05 1.6E-09 68.3 14.5 45 62-108 173-221 (394)
409 PRK14262 phosphate ABC transpo 98.1 9.8E-06 2.1E-10 69.7 8.2 55 18-72 14-72 (250)
410 COG4525 TauB ABC-type taurine 98.1 1.1E-05 2.3E-10 67.4 8.0 48 20-70 18-67 (259)
411 KOG1942 DNA helicase, TBP-inte 98.1 5.9E-05 1.3E-09 66.6 13.0 29 31-59 64-92 (456)
412 PRK13546 teichoic acids export 98.1 2E-06 4.4E-11 75.0 3.9 58 7-67 22-83 (264)
413 PRK14261 phosphate ABC transpo 98.1 5.2E-06 1.1E-10 71.6 6.3 39 18-56 17-57 (253)
414 TIGR02030 BchI-ChlI magnesium 98.1 5.5E-05 1.2E-09 68.4 13.1 43 63-107 175-219 (337)
415 PRK14253 phosphate ABC transpo 98.1 4.7E-06 1E-10 71.6 6.0 55 18-72 14-72 (249)
416 COG4161 ArtP ABC-type arginine 98.1 1.4E-05 3E-10 65.0 8.2 59 12-73 7-67 (242)
417 PRK10865 protein disaggregatio 98.1 3.2E-05 6.9E-10 77.8 12.7 32 75-108 749-780 (857)
418 COG4988 CydD ABC-type transpor 98.1 5.1E-06 1.1E-10 78.6 6.6 58 21-81 335-394 (559)
419 PRK11288 araG L-arabinose tran 98.1 2.8E-06 6E-11 80.4 4.9 56 18-76 15-72 (501)
420 PRK10762 D-ribose transporter 98.1 3.8E-06 8.2E-11 79.5 5.7 53 22-77 267-321 (501)
421 PRK14246 phosphate ABC transpo 98.1 7.3E-06 1.6E-10 71.1 7.1 42 17-58 20-63 (257)
422 PRK14087 dnaA chromosomal repl 98.1 1.3E-05 2.7E-10 75.2 9.1 106 32-137 142-321 (450)
423 smart00350 MCM minichromosome 98.1 9.7E-06 2.1E-10 77.1 8.4 44 62-107 343-400 (509)
424 PRK15064 ABC transporter ATP-b 98.1 3.1E-06 6.7E-11 80.6 5.1 45 20-67 332-378 (530)
425 CHL00095 clpC Clp protease ATP 98.1 3.7E-05 8E-10 77.1 12.8 22 34-55 542-563 (821)
426 PRK14243 phosphate transporter 98.1 6.9E-06 1.5E-10 71.4 6.7 39 18-56 21-61 (264)
427 PRK14249 phosphate ABC transpo 98.1 4.7E-06 1E-10 71.8 5.6 40 19-58 16-57 (251)
428 COG1134 TagH ABC-type polysacc 98.1 9.8E-06 2.1E-10 69.4 7.4 48 20-70 40-89 (249)
429 PRK14251 phosphate ABC transpo 98.1 7.7E-06 1.7E-10 70.4 6.8 39 18-56 15-55 (251)
430 CHL00081 chlI Mg-protoporyphyr 98.1 5.5E-05 1.2E-09 68.6 12.5 43 63-107 188-232 (350)
431 PLN03073 ABC transporter F fam 98.1 3.6E-06 7.8E-11 83.1 5.1 37 22-58 524-562 (718)
432 PF12775 AAA_7: P-loop contain 98.1 8.5E-06 1.8E-10 71.5 7.0 44 62-108 148-194 (272)
433 PRK14237 phosphate transporter 98.1 6.3E-06 1.4E-10 71.8 6.1 40 18-57 31-72 (267)
434 TIGR03269 met_CoM_red_A2 methy 98.1 9.5E-06 2.1E-10 77.1 7.8 38 18-55 11-50 (520)
435 PRK14244 phosphate ABC transpo 98.1 7E-06 1.5E-10 70.7 6.3 39 18-56 16-56 (251)
436 cd03234 ABCG_White The White s 98.1 2.6E-06 5.7E-11 72.2 3.5 49 20-71 20-73 (226)
437 cd03232 ABC_PDR_domain2 The pl 98.1 3.1E-06 6.7E-11 70.2 3.7 49 20-71 20-72 (192)
438 COG4987 CydC ABC-type transpor 98.1 1.4E-05 3.1E-10 75.1 8.3 57 21-80 352-410 (573)
439 TIGR02633 xylG D-xylose ABC tr 98.1 4.4E-06 9.5E-11 79.0 5.0 49 21-72 274-325 (500)
440 cd03213 ABCG_EPDR ABCG transpo 98.1 3E-06 6.4E-11 70.4 3.4 50 20-72 22-75 (194)
441 PRK14252 phosphate ABC transpo 98.1 8.5E-06 1.9E-10 70.8 6.4 39 19-57 28-68 (265)
442 COG1123 ATPase components of v 98.1 1.5E-05 3.2E-10 75.6 8.3 143 21-163 23-204 (539)
443 PRK14260 phosphate ABC transpo 98.1 1.2E-05 2.7E-10 69.5 7.3 39 19-57 19-59 (259)
444 TIGR01192 chvA glucan exporter 98.1 5.8E-06 1.3E-10 79.8 5.7 58 21-81 349-408 (585)
445 PRK14275 phosphate ABC transpo 98.1 6.2E-06 1.4E-10 72.7 5.4 53 20-72 52-108 (286)
446 PRK15177 Vi polysaccharide exp 98.0 2.4E-06 5.2E-11 72.1 2.6 37 22-58 2-40 (213)
447 cd03223 ABCD_peroxisomal_ALDP 98.0 3.1E-06 6.7E-11 68.6 3.2 45 20-67 14-60 (166)
448 TIGR03719 ABC_ABC_ChvD ATP-bin 98.0 5.1E-06 1.1E-10 79.6 5.1 38 21-58 336-375 (552)
449 cd03288 ABCC_SUR2 The SUR doma 98.0 3E-06 6.6E-11 73.3 3.2 57 21-80 35-93 (257)
450 TIGR02204 MsbA_rel ABC transpo 98.0 7.1E-06 1.5E-10 78.7 6.1 58 21-81 354-413 (576)
451 TIGR03346 chaperone_ClpB ATP-d 98.0 8.3E-05 1.8E-09 74.9 13.9 32 75-108 746-777 (852)
452 TIGR01187 potA spermidine/putr 98.0 1.1E-05 2.4E-10 72.4 6.9 39 36-77 1-39 (325)
453 PF13207 AAA_17: AAA domain; P 98.0 3.1E-06 6.7E-11 64.3 2.9 25 34-58 2-26 (121)
454 TIGR03345 VI_ClpV1 type VI sec 98.0 7.8E-05 1.7E-09 75.0 13.5 22 34-55 599-620 (852)
455 cd03250 ABCC_MRP_domain1 Domai 98.0 3.3E-06 7.2E-11 70.4 3.2 38 21-58 19-58 (204)
456 KOG0057 Mitochondrial Fe/S clu 98.0 9.5E-06 2.1E-10 76.4 6.5 58 20-81 365-424 (591)
457 cd03297 ABC_ModC_molybdenum_tr 98.0 1.8E-05 4E-10 66.4 7.7 44 25-71 16-60 (214)
458 PRK14266 phosphate ABC transpo 98.0 1.5E-05 3.2E-10 68.5 7.3 38 19-56 15-54 (250)
459 PRK14236 phosphate transporter 98.0 1.4E-05 3E-10 69.9 7.1 39 19-57 37-77 (272)
460 COG0470 HolB ATPase involved i 98.0 5.1E-05 1.1E-09 67.0 10.9 26 31-56 24-49 (325)
461 PRK11819 putative ABC transpor 98.0 5.2E-06 1.1E-10 79.7 4.7 38 21-58 338-377 (556)
462 PRK15056 manganese/iron transp 98.0 2.5E-06 5.4E-11 74.5 2.3 47 20-69 20-68 (272)
463 PRK14257 phosphate ABC transpo 98.0 1.1E-05 2.4E-10 72.6 6.6 53 21-73 96-152 (329)
464 COG0488 Uup ATPase components 98.0 3.3E-06 7.3E-11 80.4 3.3 51 15-68 11-63 (530)
465 PRK14245 phosphate ABC transpo 98.0 1.1E-05 2.4E-10 69.4 6.2 55 19-73 15-73 (250)
466 PTZ00265 multidrug resistance 98.0 7E-06 1.5E-10 86.7 5.8 37 21-57 1182-1220(1466)
467 PRK09544 znuC high-affinity zi 98.0 3.2E-06 6.9E-11 73.2 2.6 41 18-58 15-57 (251)
468 PRK10535 macrolide transporter 98.0 2E-05 4.4E-10 77.0 8.3 55 21-78 22-78 (648)
469 COG0542 clpA ATP-binding subun 98.0 8.4E-05 1.8E-09 73.3 12.4 31 76-108 676-706 (786)
470 PRK14239 phosphate transporter 98.0 1.8E-05 3.9E-10 68.1 7.0 38 19-56 17-56 (252)
471 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.0 3.6E-06 7.8E-11 66.8 2.3 44 21-67 14-59 (144)
472 COG4172 ABC-type uncharacteriz 98.0 1.9E-05 4.2E-10 72.2 7.1 124 19-142 22-173 (534)
473 TIGR00390 hslU ATP-dependent p 98.0 1.2E-05 2.5E-10 74.3 5.8 29 31-59 47-75 (441)
474 PRK06217 hypothetical protein; 98.0 1.3E-05 2.8E-10 65.9 5.5 26 34-59 4-29 (183)
475 PRK10982 galactose/methyl gala 98.0 8.6E-06 1.9E-10 76.9 5.0 53 21-76 262-316 (491)
476 COG4674 Uncharacterized ABC-ty 98.0 1.4E-06 3.1E-11 72.6 -0.3 66 13-81 11-79 (249)
477 COG3840 ThiQ ABC-type thiamine 98.0 2.7E-05 5.8E-10 64.4 7.1 50 26-78 18-69 (231)
478 PRK10938 putative molybdenum t 98.0 5E-06 1.1E-10 78.4 3.2 38 19-56 272-311 (490)
479 PRK00131 aroK shikimate kinase 98.0 8.4E-06 1.8E-10 65.5 4.1 29 30-58 3-31 (175)
480 KOG1969 DNA replication checkp 97.9 3.1E-05 6.7E-10 75.1 8.3 26 34-59 329-354 (877)
481 PLN03232 ABC transporter C fam 97.9 6.8E-06 1.5E-10 87.1 4.3 62 20-85 1249-1312(1495)
482 TIGR00368 Mg chelatase-related 97.9 3E-05 6.4E-10 73.6 8.2 41 14-54 192-234 (499)
483 COG0593 DnaA ATPase involved i 97.9 5.5E-05 1.2E-09 69.7 9.7 130 32-161 114-315 (408)
484 TIGR03269 met_CoM_red_A2 methy 97.9 1.3E-05 2.9E-10 76.1 5.8 45 21-68 298-344 (520)
485 COG4175 ProV ABC-type proline/ 97.9 1.6E-05 3.6E-10 70.6 5.8 56 23-81 44-101 (386)
486 cd00267 ABC_ATPase ABC (ATP-bi 97.9 1.6E-05 3.5E-10 63.5 5.4 51 21-74 13-65 (157)
487 PLN03130 ABC transporter C fam 97.9 9.7E-06 2.1E-10 86.4 5.2 61 21-85 1253-1315(1622)
488 smart00763 AAA_PrkA PrkA AAA d 97.9 1.6E-05 3.5E-10 72.1 5.8 27 31-57 78-104 (361)
489 PRK14264 phosphate ABC transpo 97.9 2.2E-05 4.8E-10 69.8 6.6 38 19-56 57-96 (305)
490 PRK14238 phosphate transporter 97.9 6.4E-06 1.4E-10 72.0 2.9 38 19-56 36-75 (271)
491 KOG0062 ATPase component of AB 97.9 1.6E-05 3.6E-10 74.3 5.6 43 11-53 84-128 (582)
492 COG1129 MglA ABC-type sugar tr 97.9 1.3E-05 2.9E-10 75.3 4.9 67 12-81 13-81 (500)
493 COG4598 HisP ABC-type histidin 97.9 7.7E-05 1.7E-09 61.7 8.6 48 11-58 10-59 (256)
494 PRK13409 putative ATPase RIL; 97.9 7.3E-06 1.6E-10 79.3 3.0 42 21-66 88-131 (590)
495 PRK09112 DNA polymerase III su 97.9 0.00018 4E-09 65.3 11.9 42 62-106 171-212 (351)
496 PRK08058 DNA polymerase III su 97.9 5.8E-05 1.3E-09 67.9 8.6 42 61-105 139-180 (329)
497 PRK14272 phosphate ABC transpo 97.9 7.4E-06 1.6E-10 70.4 2.6 40 18-57 15-56 (252)
498 PRK11147 ABC transporter ATPas 97.9 6.8E-06 1.5E-10 80.1 2.6 48 17-67 13-62 (635)
499 PTZ00112 origin recognition co 97.9 0.00033 7.2E-09 70.0 14.1 45 62-108 902-950 (1164)
500 PRK07471 DNA polymerase III su 97.9 0.00021 4.5E-09 65.4 12.0 43 62-107 171-213 (365)
No 1
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-36 Score=270.43 Aligned_cols=167 Identities=57% Similarity=0.940 Sum_probs=154.6
Q ss_pred CChHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc---------------------
Q 048723 1 METKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL--------------------- 59 (236)
Q Consensus 1 ~~~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~--------------------- 59 (236)
|+++.|++|++++..|.+++++|.++|.+|+|||||||||||||||++.|||+.|++++
T Consensus 205 Md~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t 284 (457)
T KOG0743|consen 205 MDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLAT 284 (457)
T ss_pred cChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhC
Confidence 89999999999999999999999999999999999999999999999999999999998
Q ss_pred ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723 60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR 88 (236)
Q Consensus 60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~ 88 (236)
.++++||+|||+++.|||||+||||||++
T Consensus 285 ~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmh 364 (457)
T KOG0743|consen 285 PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMH 364 (457)
T ss_pred CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeE
Confidence 22799999999999999999999999999
Q ss_pred EecccCCHHHHHHHHHHhhcccc-hhhHHHHHHHHHcCCCCHHHHHHHHcccccccChHHHHHHHHHHHHHHHHHHhhhH
Q 048723 89 IEMSYCCFEAFMVLAKSYLDIES-HAFFAEINSLLAETNMASADVAENLMPKSDEEDADSCLKNLIEALKVAKEEARKNA 167 (236)
Q Consensus 89 i~~~~p~~~~~~~i~~~~l~~~~-~~~~~~i~~ll~~~gls~a~i~~~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ 167 (236)
|++++|++++++.+++.|++... +.++.++..+.....+|||||++.++.... ++..|++.+++.|+.++.+..+..
T Consensus 365 I~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~--dad~~lk~Lv~~l~~~~~~~~~~~ 442 (457)
T KOG0743|consen 365 IYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETEVTPAQVAEELMKNKN--DADVALKGLVEALESKKEKRNKDD 442 (457)
T ss_pred EEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCccCHHHHHHHHhhccc--cHHHHHHHHHHHHHhhhhhhccch
Confidence 99999999999999999999874 889999999999999999999999997322 899999999999999887665544
Q ss_pred HH
Q 048723 168 EE 169 (236)
Q Consensus 168 ~~ 169 (236)
.+
T Consensus 443 ~~ 444 (457)
T KOG0743|consen 443 KE 444 (457)
T ss_pred hh
Confidence 44
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-32 Score=241.06 Aligned_cols=157 Identities=27% Similarity=0.369 Sum_probs=140.4
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
+++.++|.+.+..++.+|++|..+|+.+|+|+|||||||||||+||||+|+..+..|
T Consensus 157 ~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRel 236 (406)
T COG1222 157 DEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVREL 236 (406)
T ss_pred HHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHH
Confidence 468899999999999999999999999999999999999999999999999999999
Q ss_pred ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723 60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR 88 (236)
Q Consensus 60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~ 88 (236)
.+++-||++||+++.|||||+||||||+.
T Consensus 237 F~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRk 316 (406)
T COG1222 237 FELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRK 316 (406)
T ss_pred HHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccce
Confidence 55999999999999999999999999999
Q ss_pred EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcccccccChHHHHHHHHHHHHHHHHHHhhhH
Q 048723 89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPKSDEEDADSCLKNLIEALKVAKEEARKNA 167 (236)
Q Consensus 89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ 167 (236)
|+|++|+.+.|..|++.|.+........++..++. +.|+|+|||. .+|.++.+-||++.+.....++
T Consensus 317 IEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlk------------aictEAGm~AiR~~R~~Vt~~D 384 (406)
T COG1222 317 IEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLK------------AICTEAGMFAIRERRDEVTMED 384 (406)
T ss_pred eecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHH------------HHHHHHhHHHHHhccCeecHHH
Confidence 99999999999999999987655554444555555 6688888875 4566889999999999888888
Q ss_pred HHHH
Q 048723 168 EEEA 171 (236)
Q Consensus 168 ~~~~ 171 (236)
+.+|
T Consensus 385 F~~A 388 (406)
T COG1222 385 FLKA 388 (406)
T ss_pred HHHH
Confidence 8877
No 3
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-28 Score=232.88 Aligned_cols=181 Identities=22% Similarity=0.231 Sum_probs=156.9
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCcc------------------------------------------------------
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYDL------------------------------------------------------ 59 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~~------------------------------------------------------ 59 (236)
+||+||||+|||+|+++||..+++.|
T Consensus 353 LcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss 432 (782)
T COG0466 353 LCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSS 432 (782)
T ss_pred EEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCC
Confidence 99999999999999999999999999
Q ss_pred -------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 60 -------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 60 -------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
.++++||+|+|.++++|.+|++ || .+|.++.++.++...|++.||
T Consensus 433 ~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~L- 508 (782)
T COG0466 433 FRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHL- 508 (782)
T ss_pred CCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhc-
Confidence 3499999999999999999999 99 789999999999999999998
Q ss_pred ccchhhHHHHHHHHHcCCCCHHHHHHHHcc-cccccChHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHh-HHhHHHH
Q 048723 109 IESHAFFAEINSLLAETNMASADVAENLMP-KSDEEDADSCLKNLIEALKVAKEEARKNAEEEALLKAEEAK-KKAREEA 186 (236)
Q Consensus 109 ~~~~~~~~~i~~ll~~~gls~a~i~~~l~~-~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 186 (236)
+.+.++.+|+.+.++. +.. +...-...++.++.++.|++...+.+||...+...++.... .....+.
T Consensus 509 ---------iPk~~~~~gL~~~el~--i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l 577 (782)
T COG0466 509 ---------IPKQLKEHGLKKGELT--ITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNL 577 (782)
T ss_pred ---------chHHHHHcCCCcccee--ecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHH
Confidence 5666677888877654 111 11134467999999999999999999999999866544443 4666677
Q ss_pred hhhhhHhHhhhhccCCCCCCCcccccCccc---cccCCCceEEEEecCCCCCC
Q 048723 187 KAEKEEDKHAKQNVKDDGTSDIGVKQNGFV---NKAGGGGEYLILNANGEMGN 236 (236)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 236 (236)
+ ++.+....+.+...+++..||| |||.+||++|+||++.|||+
T Consensus 578 ~-------~yLG~~~f~~~~~~~~~~vGvVtGLAWT~vGGd~L~IE~~~~~Gk 623 (782)
T COG0466 578 K-------KYLGVPVFRYGKAEEEDQVGVVTGLAWTEVGGDLLTIEAVKMPGK 623 (782)
T ss_pred H-------HHhCCcccCccccccCCCCeeEeeeeeecCCceEEEEEEEEecCC
Confidence 7 9999999999999999999998 99999999999999999996
No 4
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.6e-27 Score=219.78 Aligned_cols=136 Identities=26% Similarity=0.364 Sum_probs=125.8
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
+++|+++.+.+...+.+++.|.++|+.+++|+|||||||||||+++++||++.+.+|
T Consensus 440 E~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~i 519 (693)
T KOG0730|consen 440 EELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREV 519 (693)
T ss_pred HHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999998
Q ss_pred ------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEec
Q 048723 60 ------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEM 91 (236)
Q Consensus 60 ------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~ 91 (236)
..+++||++||+++.||+|++||||||++|++
T Consensus 520 F~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyV 599 (693)
T KOG0730|consen 520 FRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYV 599 (693)
T ss_pred HHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEee
Confidence 22799999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723 92 SYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMP 138 (236)
Q Consensus 92 ~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~ 138 (236)
+.|+.+.|..|++.++...+.....++.++++ +.|||++||.+.|..
T Consensus 600 plPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~ 647 (693)
T KOG0730|consen 600 PLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQE 647 (693)
T ss_pred cCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHH
Confidence 99999999999999998777666667777777 889999999887774
No 5
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.6e-26 Score=198.50 Aligned_cols=157 Identities=26% Similarity=0.378 Sum_probs=133.4
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
+.+.++|.+.+..++.+|++|..+|+.+++|++|||+||||||.|++++|+.....|
T Consensus 191 e~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRql 270 (440)
T KOG0726|consen 191 ESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVREL 270 (440)
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHH
Confidence 357899999999999999999999999999999999999999999999999998888
Q ss_pred ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723 60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR 88 (236)
Q Consensus 60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~ 88 (236)
.+.+-||++||++++|||+|+||||+|+.
T Consensus 271 F~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrK 350 (440)
T KOG0726|consen 271 FRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRK 350 (440)
T ss_pred HHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccc
Confidence 45899999999999999999999999999
Q ss_pred EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcccccccChHHHHHHHHHHHHHHHHHHhhhH
Q 048723 89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPKSDEEDADSCLKNLIEALKVAKEEARKNA 167 (236)
Q Consensus 89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ 167 (236)
|+|+.|+...++.||..|...........+..++- ...+|++| ...+|.++.+-+|++++.+....+
T Consensus 351 Ief~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAd------------IkAictEaGllAlRerRm~vt~~D 418 (440)
T KOG0726|consen 351 IEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGAD------------IKAICTEAGLLALRERRMKVTMED 418 (440)
T ss_pred cccCCCchhhhceeEEEeecccchhccccHHHHhhccccccccc------------HHHHHHHHhHHHHHHHHhhccHHH
Confidence 99999999999999999876544332222333332 44555555 456777899999999999988888
Q ss_pred HHHH
Q 048723 168 EEEA 171 (236)
Q Consensus 168 ~~~~ 171 (236)
+.++
T Consensus 419 F~ka 422 (440)
T KOG0726|consen 419 FKKA 422 (440)
T ss_pred HHHH
Confidence 8876
No 6
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.9e-26 Score=210.66 Aligned_cols=135 Identities=24% Similarity=0.343 Sum_probs=120.8
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
++.|+++ +.+..|+++|..|.++|-..++|+||+||||||||+|++++|++.+.+|
T Consensus 310 DEAK~EL-eEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdL 388 (752)
T KOG0734|consen 310 DEAKQEL-EEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDL 388 (752)
T ss_pred HHHHHHH-HHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHH
Confidence 4567777 4478899999999999999999999999999999999999999999998
Q ss_pred ------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEec
Q 048723 60 ------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEM 91 (236)
Q Consensus 60 ------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~ 91 (236)
+..++||++||.++.||+||.||||||++|.+
T Consensus 389 F~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~V 468 (752)
T KOG0734|consen 389 FAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTV 468 (752)
T ss_pred HHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEec
Confidence 34789999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723 92 SYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMP 138 (236)
Q Consensus 92 ~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~ 138 (236)
+.|+...|..|++.|+.........+..-++. +.||+++|+.+.+..
T Consensus 469 p~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNq 516 (752)
T KOG0734|consen 469 PLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQ 516 (752)
T ss_pred CCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHH
Confidence 99999999999999998766655555555666 899999999988875
No 7
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.7e-25 Score=213.26 Aligned_cols=135 Identities=28% Similarity=0.385 Sum_probs=120.2
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
++.|++|.+ +..|+++|+.|.++|..+++|+||+||||||||.||||+|++.+.+|
T Consensus 317 deAK~El~E-~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~l 395 (774)
T KOG0731|consen 317 DEAKEELME-FVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDL 395 (774)
T ss_pred HHHHHHHHH-HHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHH
Confidence 467888866 77899999999999999999999999999999999999999999999
Q ss_pred ----------------------------------------------------cCceEEEEeecCccccchHHHhcCCccc
Q 048723 60 ----------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDK 87 (236)
Q Consensus 60 ----------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~ 87 (236)
...++|+++||+++.||+|++||||||+
T Consensus 396 f~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr 475 (774)
T KOG0731|consen 396 FPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDR 475 (774)
T ss_pred HHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCcccc
Confidence 3379999999999999999999999999
Q ss_pred EEecccCCHHHHHHHHHHhhcccchh-hHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723 88 RIEMSYCCFEAFMVLAKSYLDIESHA-FFAEINSLLA-ETNMASADVAENLMP 138 (236)
Q Consensus 88 ~i~~~~p~~~~~~~i~~~~l~~~~~~-~~~~i~~ll~-~~gls~a~i~~~l~~ 138 (236)
+|+++.|+...|..|+..|++..... ...++.+++. +.||+++||+++|..
T Consensus 476 ~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~ne 528 (774)
T KOG0731|consen 476 QIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNE 528 (774)
T ss_pred ceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhH
Confidence 99999999999999999998765543 3445566665 889999999988774
No 8
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.4e-25 Score=210.10 Aligned_cols=187 Identities=20% Similarity=0.257 Sum_probs=140.8
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCcc------------------------------------------------------
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYDL------------------------------------------------------ 59 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~~------------------------------------------------------ 59 (236)
+||+||||.|||+++++||+.+++.|
T Consensus 441 lCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g 520 (906)
T KOG2004|consen 441 LCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSG 520 (906)
T ss_pred EEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCC
Confidence 99999999999999999999999998
Q ss_pred -------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 60 -------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 60 -------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
.+.++||||+|.++.||++|++ || .+|+++.+..++.-.|.+.||
T Consensus 521 ~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yL- 596 (906)
T KOG2004|consen 521 HQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYL- 596 (906)
T ss_pred CCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhh-
Confidence 3489999999999999999999 99 789999999999999999998
Q ss_pred ccchhhHHHHHHHHHcCCCCHHHHHHHHcc-cccccChHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHhHHhHHHH-
Q 048723 109 IESHAFFAEINSLLAETNMASADVAENLMP-KSDEEDADSCLKNLIEALKVAKEEARKNAEEEALLKAEEAKKKAREEA- 186 (236)
Q Consensus 109 ~~~~~~~~~i~~ll~~~gls~a~i~~~l~~-~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 186 (236)
+.+.+...|+++.++. +.. +...-...+|.++.++.|++..++++++.+.+...+.....+.++...
T Consensus 597 ---------ip~a~~~~gl~~e~v~--is~~al~~lI~~YcrEaGVRnLqk~iekI~Rk~Al~vv~~~~~~~~~~~~~~~ 665 (906)
T KOG2004|consen 597 ---------IPQALKDCGLKPEQVK--ISDDALLALIERYCREAGVRNLQKQIEKICRKVALKVVEGENSKEESAEKNGR 665 (906)
T ss_pred ---------hhHHHHHcCCCHHhcC--ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Confidence 5666678899888765 111 112445789999999999999999999999987444321000000000
Q ss_pred ---hhhh------------------------hHhHhhhhccCCCCCCCcccccCccc---cccCCCceEEEEecCCCCC
Q 048723 187 ---KAEK------------------------EEDKHAKQNVKDDGTSDIGVKQNGFV---NKAGGGGEYLILNANGEMG 235 (236)
Q Consensus 187 ---~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 235 (236)
.... ..-.++.++.....+.-.....+||| |||..||++||||++.+-|
T Consensus 666 ~~~~~~~e~~~~~t~~~~~~~~~~~~i~I~~~nL~d~lG~P~f~~e~~y~~tp~GVvmGLaWT~mGG~~lyvEts~~~~ 744 (906)
T KOG2004|consen 666 ESTEKSIEEAESSTSGADLLPEMPENIEIDESNLQDILGPPVFTSERMYEVTPPGVVMGLAWTAMGGSTLYVETSLMRG 744 (906)
T ss_pred cccccccccccccCcccccccCCcceeeecHHHHHHHhCCCcccHHHHhccCCCeeEEEEEEecCCCeEEEEEEEEecc
Confidence 0000 01113344444444444455788887 9999999999999998754
No 9
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=8.7e-24 Score=196.80 Aligned_cols=134 Identities=22% Similarity=0.295 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------
Q 048723 4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------ 59 (236)
Q Consensus 4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------ 59 (236)
+.+.++...+..++++++.|..+|+..+.|+||+||||||||.|||++|++.+.+|
T Consensus 518 ~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vF 597 (802)
T KOG0733|consen 518 EVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVF 597 (802)
T ss_pred HHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHH
Confidence 57888888899999999999999999999999999999999999999999999999
Q ss_pred -----------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecc
Q 048723 60 -----------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMS 92 (236)
Q Consensus 60 -----------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~ 92 (236)
..++.||++||+|+.+|||++||||+|..++++
T Consensus 598 qRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~ 677 (802)
T KOG0733|consen 598 QRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVG 677 (802)
T ss_pred HHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeec
Confidence 237899999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhhcccchh--hHHHHHHHHH---cCCCCHHHHHHHHc
Q 048723 93 YCCFEAFMVLAKSYLDIESHA--FFAEINSLLA---ETNMASADVAENLM 137 (236)
Q Consensus 93 ~p~~~~~~~i~~~~l~~~~~~--~~~~i~~ll~---~~gls~a~i~~~l~ 137 (236)
.|+.+.|..|++.++.....+ ...++..++. ..|||++|+..++.
T Consensus 678 lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvr 727 (802)
T KOG0733|consen 678 LPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVR 727 (802)
T ss_pred CCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHH
Confidence 999999999999998843222 2223344443 46999999986665
No 10
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.8e-24 Score=182.20 Aligned_cols=156 Identities=27% Similarity=0.396 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------
Q 048723 4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------ 59 (236)
Q Consensus 4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------ 59 (236)
-+|++|.+.+..++.+.++|+.+|++++||+|||||||||||+|++++|+.....|
T Consensus 162 ~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvf 241 (408)
T KOG0727|consen 162 VQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVF 241 (408)
T ss_pred hhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999988877
Q ss_pred --------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEE
Q 048723 60 --------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRI 89 (236)
Q Consensus 60 --------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i 89 (236)
.-++.+|++||+.+.|||+++||||+|+.|
T Consensus 242 rlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrki 321 (408)
T KOG0727|consen 242 RLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKI 321 (408)
T ss_pred HHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccc
Confidence 238999999999999999999999999999
Q ss_pred ecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcccccccChHHHHHHHHHHHHHHHHHHhhhHH
Q 048723 90 EMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPKSDEEDADSCLKNLIEALKVAKEEARKNAE 168 (236)
Q Consensus 90 ~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~ 168 (236)
+|++|+..+++.+|.............++..+.. -..+|+++| ..+|-++.+.+.++.+--.-.++.
T Consensus 322 efplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi------------~aicqeagm~avr~nryvvl~kd~ 389 (408)
T KOG0727|consen 322 EFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADI------------NAICQEAGMLAVRENRYVVLQKDF 389 (408)
T ss_pred cCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhH------------HHHHHHHhHHHHHhcceeeeHHHH
Confidence 9999999999988887655333222222332222 344555554 455667777777766554444555
Q ss_pred HHH
Q 048723 169 EEA 171 (236)
Q Consensus 169 ~~~ 171 (236)
+++
T Consensus 390 e~a 392 (408)
T KOG0727|consen 390 EKA 392 (408)
T ss_pred HHH
Confidence 543
No 11
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.91 E-value=1.4e-23 Score=192.30 Aligned_cols=157 Identities=25% Similarity=0.363 Sum_probs=127.7
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
+.++++|.+.+..++.++.+|..+|+.+++|+||+||||||||+++++||+.++.++
T Consensus 151 ~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~l 230 (398)
T PTZ00454 151 DIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDV 230 (398)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999998776
Q ss_pred ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723 60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR 88 (236)
Q Consensus 60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~ 88 (236)
..++.||++||+++.+||+++|+||||+.
T Consensus 231 f~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~ 310 (398)
T PTZ00454 231 FRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRK 310 (398)
T ss_pred HHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEE
Confidence 12568999999999999999999999999
Q ss_pred EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcccc----cccChHHHHHHHHHHHHHH
Q 048723 89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPKS----DEEDADSCLKNLIEALKVA 159 (236)
Q Consensus 89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~~----~~~~~~~~~~~~~~~L~~~ 159 (236)
|++++|+.++|..||+.++.........++..++. +.|+|++||..+|..+. ......++.+++..++++.
T Consensus 311 I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v 386 (398)
T PTZ00454 311 IEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTV 386 (398)
T ss_pred EEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 99999999999999999977544333334555555 77999999987776521 1122345556666665554
No 12
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.2e-23 Score=194.19 Aligned_cols=131 Identities=25% Similarity=0.243 Sum_probs=111.9
Q ss_pred HHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc--------------------------
Q 048723 6 KEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-------------------------- 59 (236)
Q Consensus 6 k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-------------------------- 59 (236)
-.++.+.+ .++.+++.|..+|+.++||+|||||||||||+||++||++++.+|
T Consensus 199 ~~el~~li-~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~ 277 (802)
T KOG0733|consen 199 LAELCELI-IHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQ 277 (802)
T ss_pred HHHHHHHH-HHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHH
Confidence 34454544 448899999999999999999999999999999999999999999
Q ss_pred -------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEe
Q 048723 60 -------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIE 90 (236)
Q Consensus 60 -------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~ 90 (236)
...++||++||+|+.|||+|+|.||||+-|.
T Consensus 278 A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~ 357 (802)
T KOG0733|consen 278 AKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREIC 357 (802)
T ss_pred HhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceee
Confidence 1379999999999999999999999999999
Q ss_pred cccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHc
Q 048723 91 MSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLM 137 (236)
Q Consensus 91 ~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~ 137 (236)
++.|+..+|..|++..+........-++.+++. +.||.++|+..+|.
T Consensus 358 l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~ 405 (802)
T KOG0733|consen 358 LGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCR 405 (802)
T ss_pred ecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHH
Confidence 999999999999998876544444445666666 77999998876665
No 13
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=6e-23 Score=174.69 Aligned_cols=158 Identities=29% Similarity=0.387 Sum_probs=135.6
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
+.+.++|.+.+..+.++|++|..+|+..++|+|||||||||||.|++++|....+.|
T Consensus 153 d~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrel 232 (404)
T KOG0728|consen 153 DKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVREL 232 (404)
T ss_pred HHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHH
Confidence 356788999999999999999999999999999999999999999999999999888
Q ss_pred ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723 60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR 88 (236)
Q Consensus 60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~ 88 (236)
+.++-+|++||+++-|||+++||||+|+.
T Consensus 233 fvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrk 312 (404)
T KOG0728|consen 233 FVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRK 312 (404)
T ss_pred HHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCccccc
Confidence 23789999999999999999999999999
Q ss_pred EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHHcCCCCHHHHHHHHcccccccChHHHHHHHHHHHHHHHHHHhhhHH
Q 048723 89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLAETNMASADVAENLMPKSDEEDADSCLKNLIEALKVAKEEARKNAE 168 (236)
Q Consensus 89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~~~gls~a~i~~~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~ 168 (236)
|+|+.|+.+.|..|++.|.+.... +.|+.-..|++.+..+++++-..+|.++.+-+|++++--....++
T Consensus 313 iefp~p~e~ar~~ilkihsrkmnl-----------~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedf 381 (404)
T KOG0728|consen 313 IEFPPPNEEARLDILKIHSRKMNL-----------TRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDF 381 (404)
T ss_pred ccCCCCCHHHHHHHHHHhhhhhch-----------hcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHH
Confidence 999999999999999988653221 336666666666666777777888999999999998776666666
Q ss_pred HHH
Q 048723 169 EEA 171 (236)
Q Consensus 169 ~~~ 171 (236)
+=+
T Consensus 382 ema 384 (404)
T KOG0728|consen 382 EMA 384 (404)
T ss_pred HHH
Confidence 544
No 14
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.7e-23 Score=178.17 Aligned_cols=157 Identities=25% Similarity=0.302 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------
Q 048723 4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------ 59 (236)
Q Consensus 4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------ 59 (236)
++.+.+.+.+..++-+++-|-++|+.+++|+|||||||||||.+++++|+..+.-|
T Consensus 184 eqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf 263 (435)
T KOG0729|consen 184 EQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELF 263 (435)
T ss_pred HHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHH
Confidence 56778889999999999999999999999999999999999999999999998877
Q ss_pred --------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEE
Q 048723 60 --------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRI 89 (236)
Q Consensus 60 --------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i 89 (236)
.|++.++++||+++.|||+|+||||+|+.+
T Consensus 264 ~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpallrpgrldrkv 343 (435)
T KOG0729|consen 264 EMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKV 343 (435)
T ss_pred HHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccce
Confidence 568999999999999999999999999999
Q ss_pred ecccCCHHHHHHHHHHhhcccchhhHHHHHHHHHcCCCCHHHHHHHHcccccccChHHHHHHHHHHHHHHHHHHhhhHHH
Q 048723 90 EMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLAETNMASADVAENLMPKSDEEDADSCLKNLIEALKVAKEEARKNAEE 169 (236)
Q Consensus 90 ~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~~~gls~a~i~~~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~ 169 (236)
+|++|+.+.|..|++.|..........++ .-++.+|-...+++...+|.++.+-+++.+++-...+++.
T Consensus 344 ef~lpdlegrt~i~kihaksmsverdir~-----------ellarlcpnstgaeirsvcteagmfairarrk~atekdfl 412 (435)
T KOG0729|consen 344 EFGLPDLEGRTHIFKIHAKSMSVERDIRF-----------ELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFL 412 (435)
T ss_pred eccCCcccccceeEEEeccccccccchhH-----------HHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhhhHHHHH
Confidence 99999999999999988654333222222 1123333334455566788899999999998888888888
Q ss_pred HH
Q 048723 170 EA 171 (236)
Q Consensus 170 ~~ 171 (236)
++
T Consensus 413 ~a 414 (435)
T KOG0729|consen 413 DA 414 (435)
T ss_pred HH
Confidence 77
No 15
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=4.8e-23 Score=176.15 Aligned_cols=155 Identities=28% Similarity=0.333 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------
Q 048723 4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------ 59 (236)
Q Consensus 4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------ 59 (236)
.+.+++.+.+..+..+++.|.++|+.+++|+|+|||||||||.++++-|...+..|
T Consensus 178 kQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAF 257 (424)
T KOG0652|consen 178 KQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAF 257 (424)
T ss_pred HHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHH
Confidence 46788888899999999999999999999999999999999999999999998888
Q ss_pred --------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEE
Q 048723 60 --------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRI 89 (236)
Q Consensus 60 --------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i 89 (236)
...+-+|++||+.+.|||+++|.||+|+.|
T Consensus 258 aLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKI 337 (424)
T KOG0652|consen 258 ALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKI 337 (424)
T ss_pred HHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccc
Confidence 237899999999999999999999999999
Q ss_pred ecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcccccccChHHHHHHHHHHHHHHHHHHhhhHH
Q 048723 90 EMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPKSDEEDADSCLKNLIEALKVAKEEARKNAE 168 (236)
Q Consensus 90 ~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~ 168 (236)
+|+.|+.+.|..|+..|.+.........+..++. +.+|.+++.. .+|+++.+-+|++...+....++
T Consensus 338 EfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcK------------AVcVEAGMiALRr~atev~heDf 405 (424)
T KOG0652|consen 338 EFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCK------------AVCVEAGMIALRRGATEVTHEDF 405 (424)
T ss_pred cCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhhe------------eeehhhhHHHHhcccccccHHHH
Confidence 9999999999999999976544443333444444 5677777643 46667777777776666665555
Q ss_pred HH
Q 048723 169 EE 170 (236)
Q Consensus 169 ~~ 170 (236)
.+
T Consensus 406 me 407 (424)
T KOG0652|consen 406 ME 407 (424)
T ss_pred HH
Confidence 54
No 16
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.88 E-value=3e-22 Score=183.38 Aligned_cols=158 Identities=25% Similarity=0.359 Sum_probs=125.7
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
++++++|.+.+..++.++..|..+|+.+++|+||+||||||||+++++||+.++.+|
T Consensus 137 ~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~ 216 (389)
T PRK03992 137 EEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVREL 216 (389)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHH
Confidence 457888999998899999999999999999999999999999999999999988776
Q ss_pred ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723 60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR 88 (236)
Q Consensus 60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~ 88 (236)
.+++.||++||+++.+|++++|+||||..
T Consensus 217 f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~ 296 (389)
T PRK03992 217 FELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRI 296 (389)
T ss_pred HHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceE
Confidence 12578999999999999999999999999
Q ss_pred EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcccc---c-ccChHHHHHHHHHHHHHHH
Q 048723 89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPKS---D-EEDADSCLKNLIEALKVAK 160 (236)
Q Consensus 89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~~---~-~~~~~~~~~~~~~~L~~~~ 160 (236)
|+++.|+.++|..|++.|+..........+..++. +.|++++|+..+|..+. . .....++.+++..|+.+.+
T Consensus 297 I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~ 373 (389)
T PRK03992 297 IEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVM 373 (389)
T ss_pred EEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 99999999999999999976443322223444554 67999999987776411 1 1122355555555555543
No 17
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.88 E-value=5.8e-22 Score=183.24 Aligned_cols=156 Identities=26% Similarity=0.388 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------
Q 048723 4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------ 59 (236)
Q Consensus 4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------ 59 (236)
+++++|.+.+..++.++.+|..+++.+++|++|+||||||||+++++||+.+..++
T Consensus 190 ~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF 269 (438)
T PTZ00361 190 QQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELF 269 (438)
T ss_pred HHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHH
Confidence 46788888888888999999999999999999999999999999999999988765
Q ss_pred --------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEE
Q 048723 60 --------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRI 89 (236)
Q Consensus 60 --------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i 89 (236)
.+++.||++||+++.+|++++|+||||+.|
T Consensus 270 ~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I 349 (438)
T PTZ00361 270 RVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKI 349 (438)
T ss_pred HHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEE
Confidence 124679999999999999999999999999
Q ss_pred ecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcccccccChHHHHHHHHHHHHHHHHHHhhhHH
Q 048723 90 EMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPKSDEEDADSCLKNLIEALKVAKEEARKNAE 168 (236)
Q Consensus 90 ~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~ 168 (236)
+|+.|+.++|..|++.|+..........+..++. +.|+|++||... |.++.+.|+++.+..+...+.
T Consensus 350 ~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i------------~~eA~~~Alr~~r~~Vt~~D~ 417 (438)
T PTZ00361 350 EFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAI------------CTEAGLLALRERRMKVTQADF 417 (438)
T ss_pred EeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHH------------HHHHHHHHHHhcCCccCHHHH
Confidence 9999999999999999876443322223444444 679999988754 445666666666555555555
Q ss_pred HHH
Q 048723 169 EEA 171 (236)
Q Consensus 169 ~~~ 171 (236)
.+|
T Consensus 418 ~~A 420 (438)
T PTZ00361 418 RKA 420 (438)
T ss_pred HHH
Confidence 554
No 18
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.87 E-value=1.1e-21 Score=183.69 Aligned_cols=137 Identities=25% Similarity=0.263 Sum_probs=109.9
Q ss_pred HhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-------------------------------------------
Q 048723 23 CAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------------------------- 59 (236)
Q Consensus 23 ~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------------------------- 59 (236)
..++|+.+++|+||+||||||||+++++||+.++.++
T Consensus 251 ~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~ 330 (489)
T CHL00195 251 ASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKA 330 (489)
T ss_pred HHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhh
Confidence 4567899999999999999999999999999998876
Q ss_pred ---------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccch
Q 048723 60 ---------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESH 112 (236)
Q Consensus 60 ---------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~ 112 (236)
...++||+|||+++.||++++|+||||..|+++.|+.+.|..|++.|+.....
T Consensus 331 ~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~ 410 (489)
T CHL00195 331 FSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRP 410 (489)
T ss_pred hccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCC
Confidence 22578999999999999999999999999999999999999999999875422
Q ss_pred h--hHHHHHHHHH-cCCCCHHHHHHHHcc---cccccChHHHHHHHHHHHHHH
Q 048723 113 A--FFAEINSLLA-ETNMASADVAENLMP---KSDEEDADSCLKNLIEALKVA 159 (236)
Q Consensus 113 ~--~~~~i~~ll~-~~gls~a~i~~~l~~---~~~~~~~~~~~~~~~~~L~~~ 159 (236)
. ...++..++. +.|||++||...+.. .+......++.++++.++++-
T Consensus 411 ~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~~lt~~dl~~a~~~~ 463 (489)
T CHL00195 411 KSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKREFTTDDILLALKQF 463 (489)
T ss_pred CcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhc
Confidence 1 1234556666 789999999987765 223334455666666666543
No 19
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.87 E-value=8.7e-22 Score=193.26 Aligned_cols=135 Identities=27% Similarity=0.315 Sum_probs=117.2
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
++.|+.+.+.+..++..+.+|..+++.+++|+||+||||||||+++++||++++.+|
T Consensus 459 ~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~ 538 (733)
T TIGR01243 459 EEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREI 538 (733)
T ss_pred HHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHH
Confidence 467888999898889999999999999999999999999999999999999998887
Q ss_pred -------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEe
Q 048723 60 -------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIE 90 (236)
Q Consensus 60 -------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~ 90 (236)
..+++||++||+++.||++++|+||||+.|+
T Consensus 539 f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~ 618 (733)
T TIGR01243 539 FRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLIL 618 (733)
T ss_pred HHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEE
Confidence 1267899999999999999999999999999
Q ss_pred cccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHc
Q 048723 91 MSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLM 137 (236)
Q Consensus 91 ~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~ 137 (236)
+++|+.++|..||+.++.........++..++. +.|||++||...|.
T Consensus 619 v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~ 666 (733)
T TIGR01243 619 VPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCR 666 (733)
T ss_pred eCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999998876544333334555655 67999999987665
No 20
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1e-21 Score=186.76 Aligned_cols=152 Identities=24% Similarity=0.330 Sum_probs=120.7
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
+++|++|++.+..++.++++|. .|+..+.|+|||||||||||.+|||+|.++...|
T Consensus 678 eevK~eIldTIqlPL~hpeLfs-sglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~V 756 (953)
T KOG0736|consen 678 EEVKTEILDTIQLPLKHPELFS-SGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREV 756 (953)
T ss_pred HHHHHHHHHHhcCcccChhhhh-ccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHH
Confidence 4789999999999999999886 4888899999999999999999999999999888
Q ss_pred ----------------------------------------------------cCceEEEEeecCccccchHHHhcCCccc
Q 048723 60 ----------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDK 87 (236)
Q Consensus 60 ----------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~ 87 (236)
...++||++||+|+.|||+|+||||||.
T Consensus 757 FerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDK 836 (953)
T KOG0736|consen 757 FERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDK 836 (953)
T ss_pred HHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccce
Confidence 2279999999999999999999999999
Q ss_pred EEecccCC-HHHHHHHHHHhhcccchhhHHHHHHHHHcCCCCHHHHHHHHcc-cccccChHHHHHHHHHHHHHHHHHHhh
Q 048723 88 RIEMSYCC-FEAFMVLAKSYLDIESHAFFAEINSLLAETNMASADVAENLMP-KSDEEDADSCLKNLIEALKVAKEEARK 165 (236)
Q Consensus 88 ~i~~~~p~-~~~~~~i~~~~l~~~~~~~~~~i~~ll~~~gls~a~i~~~l~~-~~~~~~~~~~~~~~~~~L~~~~~~~~~ 165 (236)
.++++.+. .+.+..+++...+.-..+ .+++-.+|+..|-. +++++...+|..+.+.|+++.....+.
T Consensus 837 LvyvG~~~d~esk~~vL~AlTrkFkLd-----------edVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~ 905 (953)
T KOG0736|consen 837 LVYVGPNEDAESKLRVLEALTRKFKLD-----------EDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIES 905 (953)
T ss_pred eEEecCCccHHHHHHHHHHHHHHccCC-----------CCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999875 555666666655433322 23333444444444 444555567778899999998887766
Q ss_pred h
Q 048723 166 N 166 (236)
Q Consensus 166 ~ 166 (236)
.
T Consensus 906 g 906 (953)
T KOG0736|consen 906 G 906 (953)
T ss_pred c
Confidence 5
No 21
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=8.2e-22 Score=186.18 Aligned_cols=135 Identities=27% Similarity=0.360 Sum_probs=118.2
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
++.|+++.+ +..|+++|..|..+|-.+++|++|+||||||||+|++++|++.+.+|
T Consensus 156 dEakeel~E-iVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdL 234 (596)
T COG0465 156 DEAKEELSE-LVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDL 234 (596)
T ss_pred HHHHHHHHH-HHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHH
Confidence 467788766 67789999999999999999999999999999999999999999997
Q ss_pred ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723 60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR 88 (236)
Q Consensus 60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~ 88 (236)
+..++++++||+++.+||||+||||||+.
T Consensus 235 F~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRq 314 (596)
T COG0465 235 FEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQ 314 (596)
T ss_pred HHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCccee
Confidence 22689999999999999999999999999
Q ss_pred EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723 89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMP 138 (236)
Q Consensus 89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~ 138 (236)
|.++.|+...|+.|++.|..........++..++. +.||+++++.+.+..
T Consensus 315 I~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NE 365 (596)
T COG0465 315 ILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNE 365 (596)
T ss_pred eecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHH
Confidence 99999999999999999987665554445555555 789999999887763
No 22
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.86 E-value=5.3e-21 Score=163.41 Aligned_cols=149 Identities=26% Similarity=0.338 Sum_probs=125.6
Q ss_pred HHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------------
Q 048723 9 IKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------------- 59 (236)
Q Consensus 9 i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------------- 59 (236)
-...+..|+.+|+.|.+|. ++.+|||||||||||+++++||++.+.++
T Consensus 132 kcrli~~yLenPe~Fg~WA---PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~ 208 (368)
T COG1223 132 KCRLIMEYLENPERFGDWA---PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARK 208 (368)
T ss_pred HHHHHHHHhhChHHhcccC---cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3466788999999998764 56799999999999999999999999998
Q ss_pred -------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCH
Q 048723 60 -------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCF 96 (236)
Q Consensus 60 -------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~ 96 (236)
+.+++.|++||+++.||++++. ||..-|+|.+|+.
T Consensus 209 ~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~ 286 (368)
T COG1223 209 AAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRS--RFEEEIEFKLPND 286 (368)
T ss_pred cCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHh--hhhheeeeeCCCh
Confidence 3378999999999999999988 9999999999999
Q ss_pred HHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcccccccChHHHHHHHHHHHHHHHHHHhhhHHHHHhH
Q 048723 97 EAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPKSDEEDADSCLKNLIEALKVAKEEARKNAEEEALL 173 (236)
Q Consensus 97 ~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 173 (236)
++|..|++.|....+.+....+..+++ +.|||+.||.+.+.. .++.+++.+-++++++++.+.+..
T Consensus 287 eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK-----------~aLh~Ai~ed~e~v~~edie~al~ 353 (368)
T COG1223 287 EERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLK-----------TALHRAIAEDREKVEREDIEKALK 353 (368)
T ss_pred HHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHH-----------HHHHHHHHhchhhhhHHHHHHHHH
Confidence 999999999987666666666666665 789999999977774 557777777777777777776633
No 23
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=4.8e-21 Score=171.02 Aligned_cols=146 Identities=23% Similarity=0.227 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------
Q 048723 4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------ 59 (236)
Q Consensus 4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------ 59 (236)
+.|+-|.+.|..++--|++|..+- .+.+|+|++||||||||+|||++|.+++-.|
T Consensus 219 ~AK~lL~EAVvlPi~mPe~F~Gir-rPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLF 297 (491)
T KOG0738|consen 219 EAKKLLKEAVVLPIWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLF 297 (491)
T ss_pred HHHHHHHHHHhhhhhhHHHHhhcc-cccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHH
Confidence 578888899999999999998764 4558999999999999999999999999888
Q ss_pred -------------------------------------------------cCc---eEEEEeecCccccchHHHhcCCccc
Q 048723 60 -------------------------------------------------VGE---KGIVFTTNYVDKLDPALIRRGRMDK 87 (236)
Q Consensus 60 -------------------------------------------------~~~---~~vi~ttN~~~~ld~al~r~gR~d~ 87 (236)
..+ ++|+++||.|+.||.|++| ||..
T Consensus 298 emARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrR--RlEK 375 (491)
T KOG0738|consen 298 EMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRR--RLEK 375 (491)
T ss_pred HHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHH--HHhh
Confidence 113 8899999999999999999 9999
Q ss_pred EEecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcccccccChHHHHHHHHHHHHHHHHHHh
Q 048723 88 RIEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPKSDEEDADSCLKNLIEALKVAKEEAR 164 (236)
Q Consensus 88 ~i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~ 164 (236)
.|++++|+.+.|..+++..++.........+..+++ ..|||++||.++|. ++-+.++++......
T Consensus 376 RIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCr------------eAsm~~mRR~i~g~~ 441 (491)
T KOG0738|consen 376 RIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCR------------EASMMAMRRKIAGLT 441 (491)
T ss_pred heeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHH------------HHHHHHHHHHHhcCC
Confidence 999999999999999999988655443333444544 66888888866555 556666666555443
No 24
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.85 E-value=8.8e-21 Score=178.68 Aligned_cols=156 Identities=24% Similarity=0.349 Sum_probs=124.8
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
++.|+++.+ +..++..+..|..++..+++|+||+||||||||+++++||+.++.++
T Consensus 61 ~~~k~~l~~-~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~ 139 (495)
T TIGR01241 61 DEAKEELME-IVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDL 139 (495)
T ss_pred HHHHHHHHH-HHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHH
Confidence 456777776 45567888899999999999999999999999999999999998776
Q ss_pred ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723 60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR 88 (236)
Q Consensus 60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~ 88 (236)
.+.++||++||+++.|||+++|+||||+.
T Consensus 140 f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~ 219 (495)
T TIGR01241 140 FEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQ 219 (495)
T ss_pred HHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEE
Confidence 01368999999999999999999999999
Q ss_pred EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcccc----cccChHHHHHHHHHHHHHH
Q 048723 89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPKS----DEEDADSCLKNLIEALKVA 159 (236)
Q Consensus 89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~~----~~~~~~~~~~~~~~~L~~~ 159 (236)
|+++.|+.+.|..|++.|+..........+..++. +.|+|++||...+.... ......++.+++..++.+.
T Consensus 220 i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 220 VVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRV 295 (495)
T ss_pred EEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 99999999999999999987544333334555555 77999999998877521 1123346677777777654
No 25
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.85 E-value=1.2e-20 Score=171.24 Aligned_cols=135 Identities=29% Similarity=0.390 Sum_probs=112.9
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
++++++|.+.+..++.++..|..+|+.+++|++|+||||||||+++++|++.++.++
T Consensus 128 ~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~ 207 (364)
T TIGR01242 128 EEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREI 207 (364)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHH
Confidence 467888888888888999999999999999999999999999999999999988776
Q ss_pred ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723 60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR 88 (236)
Q Consensus 60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~ 88 (236)
.+++.||++||+++.+|++++|+||||+.
T Consensus 208 f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~ 287 (364)
T TIGR01242 208 FELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRI 287 (364)
T ss_pred HHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceE
Confidence 12567999999999999999999999999
Q ss_pred EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHc
Q 048723 89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLM 137 (236)
Q Consensus 89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~ 137 (236)
|+++.|+.++|..|++.|+..........+..++. +.|++++|+..++.
T Consensus 288 i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~ 337 (364)
T TIGR01242 288 IEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICT 337 (364)
T ss_pred EEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999999875433221122344444 56899998876555
No 26
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.4e-20 Score=177.15 Aligned_cols=136 Identities=29% Similarity=0.371 Sum_probs=117.4
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
.+.|+.+.+.+...+..++.|..+++.+++|+||+||||||||++++++|+.++.+|
T Consensus 248 ~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~ 327 (494)
T COG0464 248 EEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIREL 327 (494)
T ss_pred HHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHH
Confidence 457888999999999999999999999999999999999999999999999999888
Q ss_pred ------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEec
Q 048723 60 ------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEM 91 (236)
Q Consensus 60 ------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~ 91 (236)
..++++|++||+++.+|++++|+||||..|++
T Consensus 328 F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v 407 (494)
T COG0464 328 FEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYV 407 (494)
T ss_pred HHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeec
Confidence 23788999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHhhcccchh--hHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723 92 SYCCFEAFMVLAKSYLDIESHA--FFAEINSLLA-ETNMASADVAENLMP 138 (236)
Q Consensus 92 ~~p~~~~~~~i~~~~l~~~~~~--~~~~i~~ll~-~~gls~a~i~~~l~~ 138 (236)
+.|+...|..+++.|+...... ....+..+++ +.++|++||...|..
T Consensus 408 ~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~e 457 (494)
T COG0464 408 PLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVRE 457 (494)
T ss_pred CCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHH
Confidence 9999999999999999844332 2234445555 678999988766664
No 27
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.2e-20 Score=167.55 Aligned_cols=134 Identities=24% Similarity=0.240 Sum_probs=117.2
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhC-CCCCcceEEECCCCCChHHHHHHHHhhcCCcc----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIG-KAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL---------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~-~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~---------------------- 59 (236)
+..++++.+.+..++..+++|.... +.+++|+||+||||||||++|+++|++.+..|
T Consensus 98 e~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~A 177 (386)
T KOG0737|consen 98 EEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKA 177 (386)
T ss_pred HHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHHHHHHHH
Confidence 4578899999999999999997555 46788899999999999999999999999988
Q ss_pred ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723 60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR 88 (236)
Q Consensus 60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~ 88 (236)
...++|+++||+|..||.|++| ||...
T Consensus 178 vFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiR--R~p~r 255 (386)
T KOG0737|consen 178 VFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIR--RLPRR 255 (386)
T ss_pred HHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHH--hCcce
Confidence 2258999999999999999999 99999
Q ss_pred EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723 89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMP 138 (236)
Q Consensus 89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~ 138 (236)
++++.|+..+|..|++.++........-++..++. +.|||++||.+.|..
T Consensus 256 f~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~ 306 (386)
T KOG0737|consen 256 FHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRL 306 (386)
T ss_pred eeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHH
Confidence 99999999999999999998766654445566665 779999999988885
No 28
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.83 E-value=4.3e-20 Score=173.27 Aligned_cols=131 Identities=27% Similarity=0.323 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCc----------c-------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYD----------L------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~----------~------------- 59 (236)
++++++|.+.+..++.++++|+.+++.+++|+|||||||||||++++++|+.++.+ |
T Consensus 188 ~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyv 267 (512)
T TIGR03689 188 DSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYV 267 (512)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhccccc
Confidence 35778899999999999999999999999999999999999999999999987533 1
Q ss_pred ---------------------------------------------------------------cCceEEEEeecCccccc
Q 048723 60 ---------------------------------------------------------------VGEKGIVFTTNYVDKLD 76 (236)
Q Consensus 60 ---------------------------------------------------------------~~~~~vi~ttN~~~~ld 76 (236)
.++++||++||+++.||
T Consensus 268 Gete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LD 347 (512)
T TIGR03689 268 GETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMID 347 (512)
T ss_pred chHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCC
Confidence 13678999999999999
Q ss_pred hHHHhcCCcccEEecccCCHHHHHHHHHHhhcccchhhHHHHHHHHHcCCCCHHHHHHHHc
Q 048723 77 PALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLAETNMASADVAENLM 137 (236)
Q Consensus 77 ~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~~~gls~a~i~~~l~ 137 (236)
|+++||||||++|+|++|+.+++..|++.|+.... +.... +....|.+++++...+.
T Consensus 348 pALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l-~l~~~---l~~~~g~~~a~~~al~~ 404 (512)
T TIGR03689 348 PAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSL-PLDAD---LAEFDGDREATAAALIQ 404 (512)
T ss_pred HhhcCccccceEEEeCCCCHHHHHHHHHHHhhccC-CchHH---HHHhcCCCHHHHHHHHH
Confidence 99999999999999999999999999999986421 12222 23345777776654443
No 29
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.8e-20 Score=163.29 Aligned_cols=154 Identities=23% Similarity=0.326 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------
Q 048723 4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------ 59 (236)
Q Consensus 4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------ 59 (236)
++..++.+.+...+..+.++-.+|+.+|.|++||||||||||.+++++|..++..|
T Consensus 139 ~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf 218 (388)
T KOG0651|consen 139 YQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMF 218 (388)
T ss_pred HHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHH
Confidence 35567788888888999999999999999999999999999999999999999988
Q ss_pred --------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEE
Q 048723 60 --------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRI 89 (236)
Q Consensus 60 --------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i 89 (236)
.+.+-+|+|||+++.|||+|+|+||+|+.+
T Consensus 219 ~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~ 298 (388)
T KOG0651|consen 219 RYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKV 298 (388)
T ss_pred HHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCcccccee
Confidence 458999999999999999999999999999
Q ss_pred ecccCCHHHHHHHHHHhhccc---chhhHHHHHHHHHcCCCCHHHHHHHHcccccccCh----HHHHHHHHHHHHHH
Q 048723 90 EMSYCCFEAFMVLAKSYLDIE---SHAFFAEINSLLAETNMASADVAENLMPKSDEEDA----DSCLKNLIEALKVA 159 (236)
Q Consensus 90 ~~~~p~~~~~~~i~~~~l~~~---~~~~~~~i~~ll~~~gls~a~i~~~l~~~~~~~~~----~~~~~~~~~~L~~~ 159 (236)
+++.|+...|..+++.|-... +.-.+..+.++.. +|.++++.+.|...-....+ .+..+++..++++.
T Consensus 299 ~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d--~f~gad~rn~~tEag~Fa~~~~~~~vl~Ed~~k~vrk~ 373 (388)
T KOG0651|consen 299 EIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVD--GFNGADLRNVCTEAGMFAIPEERDEVLHEDFMKLVRKQ 373 (388)
T ss_pred ccCCcchhhceeeEeeccccccccccccHHHHHHHHh--ccChHHHhhhcccccccccchhhHHHhHHHHHHHHHHH
Confidence 999999999998888774322 1112344444444 89999998888873222222 34556666555544
No 30
>CHL00176 ftsH cell division protein; Validated
Probab=99.83 E-value=8.4e-20 Score=175.84 Aligned_cols=156 Identities=26% Similarity=0.331 Sum_probs=125.2
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
++.++++.+ +..++..+..|..++..+++|+||+||||||||+++++||+.++.++
T Consensus 189 ~~~k~~l~e-iv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~l 267 (638)
T CHL00176 189 EEAKEEFEE-VVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDL 267 (638)
T ss_pred HHHHHHHHH-HHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHH
Confidence 345666654 55677888899999999999999999999999999999999988776
Q ss_pred ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723 60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR 88 (236)
Q Consensus 60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~ 88 (236)
...++||++||+++.+|++++|+||||+.
T Consensus 268 F~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~ 347 (638)
T CHL00176 268 FKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQ 347 (638)
T ss_pred HHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceE
Confidence 11468999999999999999999999999
Q ss_pred EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcccc----cccChHHHHHHHHHHHHHH
Q 048723 89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPKS----DEEDADSCLKNLIEALKVA 159 (236)
Q Consensus 89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~~----~~~~~~~~~~~~~~~L~~~ 159 (236)
|.++.|+.++|..|++.|+..........+..++. +.||+++||.+.+..++ ......++.+++..++.+.
T Consensus 348 I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 348 ITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRV 423 (638)
T ss_pred EEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 99999999999999999987644444445566665 78999999998777521 1223346667777776654
No 31
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.4e-19 Score=169.56 Aligned_cols=135 Identities=24% Similarity=0.295 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------
Q 048723 4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------ 59 (236)
Q Consensus 4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------ 59 (236)
+.|+.+.+.+..+.+-+.+|.+..+..+.|+|||||||||||.|+.++|...+..|
T Consensus 674 ~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF 753 (952)
T KOG0735|consen 674 EAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLF 753 (952)
T ss_pred HHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHH
Confidence 56778888888888889999999999999999999999999999999999999888
Q ss_pred -----------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecc
Q 048723 60 -----------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMS 92 (236)
Q Consensus 60 -----------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~ 92 (236)
..++.|+++|.+|+.|||||+||||+|+.++-+
T Consensus 754 ~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~ 833 (952)
T KOG0735|consen 754 ERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCP 833 (952)
T ss_pred HHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCC
Confidence 227889999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723 93 YCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMP 138 (236)
Q Consensus 93 ~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~ 138 (236)
.|+..+|..|++........+...++..++. +.|||++|++.++..
T Consensus 834 ~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~ 880 (952)
T KOG0735|consen 834 LPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYN 880 (952)
T ss_pred CCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHH
Confidence 9999999999998765444444555666665 889999999988874
No 32
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.80 E-value=4.6e-19 Score=174.92 Aligned_cols=147 Identities=19% Similarity=0.177 Sum_probs=109.2
Q ss_pred ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccchhhHHHHHHHHHcC-------CCCHHHHHH
Q 048723 62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLAET-------NMASADVAE 134 (236)
Q Consensus 62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~~~-------gls~a~i~~ 134 (236)
.++||+|||.++.+|+++++ || .+|.|+.|+.+.+..|++.|+. .+.+... .++...+.
T Consensus 463 ~v~~I~TtN~~~~i~~~L~~--R~-~vi~~~~~~~~e~~~I~~~~l~----------~~~~~~~~l~~~~~~~~~~~l~- 528 (775)
T TIGR00763 463 KVIFIATANSIDTIPRPLLD--RM-EVIELSGYTEEEKLEIAKKYLI----------PKALEDHGLKPDELKITDEALL- 528 (775)
T ss_pred CEEEEEecCCchhCCHHHhC--Ce-eEEecCCCCHHHHHHHHHHHHH----------HHHHHHcCCCcceEEECHHHHH-
Confidence 47889999999999999999 88 4789999999999999998872 2222222 34444333
Q ss_pred HHcccccccChHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHH------hHHhHHHHhhhhhHhHhhhhccCCCCCCCc
Q 048723 135 NLMPKSDEEDADSCLKNLIEALKVAKEEARKNAEEEALLKAEEA------KKKAREEAKAEKEEDKHAKQNVKDDGTSDI 208 (236)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (236)
.+. ..+|.++.++.|++..++..++...+........ ....++..+ .+.+......+...
T Consensus 529 ~i~-------~~~~~e~g~R~l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~-------~~lg~~~~~~~~~~ 594 (775)
T TIGR00763 529 LLI-------KYYTREAGVRNLERQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLK-------KYLGKPVFTYERAY 594 (775)
T ss_pred HHH-------HhcChhcCChHHHHHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHH-------HhcCccccccchhc
Confidence 222 2477788899999999999888877653211111 123344444 88888888877777
Q ss_pred ccccCccc---cccCCCceEEEEecCCCCCC
Q 048723 209 GVKQNGFV---NKAGGGGEYLILNANGEMGN 236 (236)
Q Consensus 209 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 236 (236)
....+|+| |||++||.+++||++.++|+
T Consensus 595 ~~~~~G~v~gla~~~~~g~~~~iE~~~~~G~ 625 (775)
T TIGR00763 595 EVTPPGVVMGLAWTPMGGDTLFIETTKVAGK 625 (775)
T ss_pred cCCCCeEEEEEEEeCCCcEEEEEEEEEeCCC
Confidence 77889997 99999999999999999984
No 33
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.79 E-value=1.4e-18 Score=168.33 Aligned_cols=134 Identities=25% Similarity=0.332 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------
Q 048723 4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------ 59 (236)
Q Consensus 4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------ 59 (236)
..+.++.+ +..++..+..+..++..+++|++|+||||||||++++++++.++.+|
T Consensus 159 ~~~~~l~~-i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f 237 (644)
T PRK10733 159 EAKEEVAE-LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMF 237 (644)
T ss_pred HHHHHHHH-HHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHH
Confidence 34455544 44556777788888899999999999999999999999999998876
Q ss_pred --------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEE
Q 048723 60 --------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRI 89 (236)
Q Consensus 60 --------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i 89 (236)
...+++|++||+++.||++++|+||||+.|
T Consensus 238 ~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i 317 (644)
T PRK10733 238 EQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQV 317 (644)
T ss_pred HHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEE
Confidence 114789999999999999999999999999
Q ss_pred ecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723 90 EMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMP 138 (236)
Q Consensus 90 ~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~ 138 (236)
+++.|+.+.|..|++.|+.........++..++. +.|||++||.+++..
T Consensus 318 ~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~e 367 (644)
T PRK10733 318 VVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNE 367 (644)
T ss_pred EcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHH
Confidence 9999999999999999987544332333445555 789999999988875
No 34
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=7.2e-19 Score=173.35 Aligned_cols=135 Identities=24% Similarity=0.218 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------
Q 048723 4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------ 59 (236)
Q Consensus 4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------ 59 (236)
..++++++.|..++-.+++|.++++.++||+||+||||||||++++++|..+....
T Consensus 272 ~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERq 351 (1080)
T KOG0732|consen 272 NYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQ 351 (1080)
T ss_pred HHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHH
Confidence 46788999999999999999999999999999999999999999999999885443
Q ss_pred ----------------------------------------------------cCceEEEEeecCccccchHHHhcCCccc
Q 048723 60 ----------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDK 87 (236)
Q Consensus 60 ----------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~ 87 (236)
.|.+++|++||+++.+||+++||||||+
T Consensus 352 lrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~dpaLRRPgrfdr 431 (1080)
T KOG0732|consen 352 LRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALRRPGRFDR 431 (1080)
T ss_pred HHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCccccchhhcCCcccce
Confidence 6699999999999999999999999999
Q ss_pred EEecccCCHHHHHHHHHHhhcc-cchhhHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723 88 RIEMSYCCFEAFMVLAKSYLDI-ESHAFFAEINSLLA-ETNMASADVAENLMP 138 (236)
Q Consensus 88 ~i~~~~p~~~~~~~i~~~~l~~-~~~~~~~~i~~ll~-~~gls~a~i~~~l~~ 138 (236)
.++|++|+.+.|..|+..|.+. ...........+++ +.|+-++|+..+|..
T Consensus 432 ef~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTe 484 (1080)
T KOG0732|consen 432 EFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTE 484 (1080)
T ss_pred eEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHH
Confidence 9999999999999999988763 33323344455555 778888887766663
No 35
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.78 E-value=3.3e-19 Score=175.34 Aligned_cols=176 Identities=17% Similarity=0.169 Sum_probs=129.6
Q ss_pred cceEEECCCCCChHHHHHHHHhhcCCcc----------------------------------------------------
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLNYDL---------------------------------------------------- 59 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~~~~---------------------------------------------------- 59 (236)
..++|+||||+||||++++||+.++.++
T Consensus 350 ~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~ 429 (784)
T PRK10787 350 PILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMS 429 (784)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcc
Confidence 3489999999999999999999988876
Q ss_pred ---------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHh
Q 048723 60 ---------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSY 106 (236)
Q Consensus 60 ---------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~ 106 (236)
.+.+++|+|+|.. .||++|++ || .+|.|..++.++...|++.|
T Consensus 430 ~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~-~ii~~~~~t~eek~~Ia~~~ 505 (784)
T PRK10787 430 SDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLD--RM-EVIRLSGYTEDEKLNIAKRH 505 (784)
T ss_pred cccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhc--ce-eeeecCCCCHHHHHHHHHHh
Confidence 1578999999998 59999999 89 57888888899999999999
Q ss_pred hcccchhhHHHHHHHHHc-------CCCCHHHHHHHHcccccccChHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHH-HH
Q 048723 107 LDIESHAFFAEINSLLAE-------TNMASADVAENLMPKSDEEDADSCLKNLIEALKVAKEEARKNAEEEALLKAE-EA 178 (236)
Q Consensus 107 l~~~~~~~~~~i~~ll~~-------~gls~a~i~~~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~-~~ 178 (236)
+.. +.++. ..++.+ +.+.+.. .++.+...+.|++..++..++...+...... ..
T Consensus 506 L~~----------k~~~~~~l~~~~l~i~~~-ai~~ii~-------~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~~~~~ 567 (784)
T PRK10787 506 LLP----------KQIERNALKKGELTVDDS-AIIGIIR-------YYTREAGVRSLEREISKLCRKAVKQLLLDKSLKH 567 (784)
T ss_pred hhH----------HHHHHhCCCCCeEEECHH-HHHHHHH-------hCCcccCCcHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 821 11121 233444 2233331 2345666777777777777666665422211 11
Q ss_pred hHHhHHHHhhhhhHhHhhhhccCCCCCCCcccccCccc---cccCCCceEEEEecCCCCCC
Q 048723 179 KKKAREEAKAEKEEDKHAKQNVKDDGTSDIGVKQNGFV---NKAGGGGEYLILNANGEMGN 236 (236)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 236 (236)
.....+... ++.+......+.......+||| |||++||++|+||+..+||+
T Consensus 568 v~v~~~~~~-------~~lg~~~~~~~~~~~~~~~G~~~gla~t~~gg~~l~iE~~~~~g~ 621 (784)
T PRK10787 568 IEINGDNLH-------DYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGK 621 (784)
T ss_pred eeecHHHHH-------HHhCCCccccchhhcCCCceEEEEeEEeCCCeEEEEEEEEEecCC
Confidence 224445555 8999888887777777899998 99999999999999999996
No 36
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.2e-19 Score=156.05 Aligned_cols=127 Identities=28% Similarity=0.280 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------
Q 048723 4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------ 59 (236)
Q Consensus 4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------ 59 (236)
..|+.+.+.|..+++-|++|.. .-.+.+|+|||||||||||.|++++|.+.+..|
T Consensus 140 ~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLF 218 (439)
T KOG0739|consen 140 GAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLF 218 (439)
T ss_pred hHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHH
Confidence 4688999999999999988875 344568999999999999999999999999887
Q ss_pred ------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEec
Q 048723 60 ------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEM 91 (236)
Q Consensus 60 ------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~ 91 (236)
...++|+++||-++.||.+++| ||+..|++
T Consensus 219 emARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRR--RFekRIYI 296 (439)
T KOG0739|consen 219 EMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRR--RFEKRIYI 296 (439)
T ss_pred HHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHH--Hhhcceec
Confidence 3378999999999999999999 99999999
Q ss_pred ccCCHHHHHHHHHHhhcccchhhH-HHHHHHHH-cCCCCHHHHH
Q 048723 92 SYCCFEAFMVLAKSYLDIESHAFF-AEINSLLA-ETNMASADVA 133 (236)
Q Consensus 92 ~~p~~~~~~~i~~~~l~~~~~~~~-~~i~~ll~-~~gls~a~i~ 133 (236)
++|....|..+|+.|++..++.+. .++..+.. +.|+|++||.
T Consensus 297 PLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDis 340 (439)
T KOG0739|consen 297 PLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDIS 340 (439)
T ss_pred cCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceE
Confidence 999999999999999998776653 46666665 7899999874
No 37
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.77 E-value=1.3e-18 Score=178.49 Aligned_cols=140 Identities=16% Similarity=0.162 Sum_probs=102.9
Q ss_pred hhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc----------------------------------------
Q 048723 20 KEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL---------------------------------------- 59 (236)
Q Consensus 20 ~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~---------------------------------------- 59 (236)
+.....+|+.+++|+||+||||||||+||++||+..+.+|
T Consensus 1619 kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~ 1698 (2281)
T CHL00206 1619 KPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLD 1698 (2281)
T ss_pred cCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccc
Confidence 3456778999999999999999999999999998876543
Q ss_pred -----------------------------------------------------------------------cCceEEEEe
Q 048723 60 -----------------------------------------------------------------------VGEKGIVFT 68 (236)
Q Consensus 60 -----------------------------------------------------------------------~~~~~vi~t 68 (236)
..+++||+|
T Consensus 1699 ~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAA 1778 (2281)
T CHL00206 1699 TELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIAS 1778 (2281)
T ss_pred hhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEe
Confidence 014789999
Q ss_pred ecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccchhh---HHHHHHHHH-cCCCCHHHHHHHHcccc----
Q 048723 69 TNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAF---FAEINSLLA-ETNMASADVAENLMPKS---- 140 (236)
Q Consensus 69 tN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~~~---~~~i~~ll~-~~gls~a~i~~~l~~~~---- 140 (236)
||+|+.||||++||||||+.|+++.|+..+|+.++..++...+..+ ..++..++. +.|+|+||++.+|..++
T Consensus 1779 TNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAi 1858 (2281)
T CHL00206 1779 THIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISI 1858 (2281)
T ss_pred CCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988775432111111 123455555 78999999987776411
Q ss_pred cccChHHHHHHHHHHHHHH
Q 048723 141 DEEDADSCLKNLIEALKVA 159 (236)
Q Consensus 141 ~~~~~~~~~~~~~~~L~~~ 159 (236)
......++...+..|+.+.
T Consensus 1859 rq~ks~Id~~~I~~Al~Rq 1877 (2281)
T CHL00206 1859 TQKKSIIDTNTIRSALHRQ 1877 (2281)
T ss_pred HcCCCccCHHHHHHHHHHH
Confidence 1122234555555555544
No 38
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.73 E-value=3.4e-17 Score=160.92 Aligned_cols=135 Identities=30% Similarity=0.325 Sum_probs=113.1
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
++.++.|.+.+..++..+++|..+++.+++|++|+||||||||+++++||+.++.++
T Consensus 184 ~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~l 263 (733)
T TIGR01243 184 KEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREI 263 (733)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHH
Confidence 356788888888888999999999999999999999999999999999999987665
Q ss_pred ------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEec
Q 048723 60 ------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEM 91 (236)
Q Consensus 60 ------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~ 91 (236)
.+.+++|++||+++.+|++++|+|||+..+++
T Consensus 264 f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i 343 (733)
T TIGR01243 264 FKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVI 343 (733)
T ss_pred HHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEe
Confidence 23578888999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHc
Q 048723 92 SYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLM 137 (236)
Q Consensus 92 ~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~ 137 (236)
+.|+.+.|..|++.++..........+..++. +.|++++++...+.
T Consensus 344 ~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~ 390 (733)
T TIGR01243 344 RVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAK 390 (733)
T ss_pred CCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHH
Confidence 99999999999998876443322223445555 77999998876544
No 39
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=6.7e-18 Score=155.75 Aligned_cols=122 Identities=25% Similarity=0.347 Sum_probs=101.1
Q ss_pred hhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-------------------------------------
Q 048723 17 SEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------------------- 59 (236)
Q Consensus 17 ~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------------------- 59 (236)
.-.|++..++|+..-+|+|||||||||||.+|+.|...|+..-
T Consensus 242 vFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~ 321 (744)
T KOG0741|consen 242 VFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGA 321 (744)
T ss_pred cCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCc
Confidence 3468899999999999999999999999999999999997553
Q ss_pred ---------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccC
Q 048723 60 ---------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYC 94 (236)
Q Consensus 60 ---------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p 94 (236)
..+++||+.||+.+.||.||+||||++.++++++|
T Consensus 322 ~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLP 401 (744)
T KOG0741|consen 322 NSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLP 401 (744)
T ss_pred cCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCC
Confidence 23899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhcccch----hhHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723 95 CFEAFMVLAKSYLDIESH----AFFAEINSLLA-ETNMASADVAENLMP 138 (236)
Q Consensus 95 ~~~~~~~i~~~~l~~~~~----~~~~~i~~ll~-~~gls~a~i~~~l~~ 138 (236)
+...|..|++.|...... ....++..++. +.+||+|+|.-++..
T Consensus 402 DE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVks 450 (744)
T KOG0741|consen 402 DEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKS 450 (744)
T ss_pred CccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHH
Confidence 999999999988653211 12223444444 679999998766653
No 40
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.70 E-value=1.9e-16 Score=142.28 Aligned_cols=99 Identities=19% Similarity=0.153 Sum_probs=83.3
Q ss_pred HHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------------------------
Q 048723 22 YCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------------------------ 59 (236)
Q Consensus 22 ~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------------------------ 59 (236)
++...++.++++++|+||||||||+++++||+.++.++
T Consensus 139 ~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFI 218 (413)
T PLN00020 139 FLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFI 218 (413)
T ss_pred hhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEE
Confidence 34446789999999999999999999999999999988
Q ss_pred -----------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecc
Q 048723 60 -----------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMS 92 (236)
Q Consensus 60 -----------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~ 92 (236)
...+.||+|||+++.|||+|+|+||||..+ .
T Consensus 219 DEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~ 296 (413)
T PLN00020 219 NDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--W 296 (413)
T ss_pred ehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--C
Confidence 013788999999999999999999999965 4
Q ss_pred cCCHHHHHHHHHHhhcccchhhHHHHHHHHH
Q 048723 93 YCCFEAFMVLAKSYLDIESHAFFAEINSLLA 123 (236)
Q Consensus 93 ~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~ 123 (236)
.|+.+.|..|++.++...... ..++.+++.
T Consensus 297 lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~ 326 (413)
T PLN00020 297 APTREDRIGVVHGIFRDDGVS-REDVVKLVD 326 (413)
T ss_pred CCCHHHHHHHHHHHhccCCCC-HHHHHHHHH
Confidence 799999999999998765444 355666665
No 41
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.3e-16 Score=148.82 Aligned_cols=133 Identities=26% Similarity=0.310 Sum_probs=115.0
Q ss_pred HHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc--------------------------
Q 048723 6 KEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-------------------------- 59 (236)
Q Consensus 6 k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-------------------------- 59 (236)
-..+.+.+...+..+..+..+|..+++|+|+|||||||||.+++++|++.+..+
T Consensus 193 ~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~ 272 (693)
T KOG0730|consen 193 LSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAE 272 (693)
T ss_pred HHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHH
Confidence 345667777777888999999999999999999999999999999999998555
Q ss_pred ---------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccC
Q 048723 60 ---------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYC 94 (236)
Q Consensus 60 ---------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p 94 (236)
.+.++++.+||+++.||++++| ||||+.++++.|
T Consensus 273 a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP 351 (693)
T KOG0730|consen 273 ALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIP 351 (693)
T ss_pred HhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhc-CCCcceeeecCC
Confidence 2478999999999999999999 999999999999
Q ss_pred CHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHccc
Q 048723 95 CFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPK 139 (236)
Q Consensus 95 ~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~ 139 (236)
+...|..|++.+..........++..++. ++|+.++|+...|...
T Consensus 352 ~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea 397 (693)
T KOG0730|consen 352 GSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREA 397 (693)
T ss_pred CchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHH
Confidence 99999999999987665554455666665 8999999998888763
No 42
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.3e-16 Score=145.84 Aligned_cols=137 Identities=23% Similarity=0.240 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------
Q 048723 4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------ 59 (236)
Q Consensus 4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------ 59 (236)
..|+.+.+.+...+.+++.|..+. .+.+|+||.||||+|||+|+++||.+.+..|
T Consensus 160 ~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~Ge~eK~vralf 238 (428)
T KOG0740|consen 160 DAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVGESEKLVRALF 238 (428)
T ss_pred hHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccChHHHHHHHHH
Confidence 578888888888888888887654 3457899999999999999999999999888
Q ss_pred -------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEe
Q 048723 60 -------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIE 90 (236)
Q Consensus 60 -------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~ 90 (236)
...+++|++||.++.+|.+.+| ||...++
T Consensus 239 ~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~R--rf~kr~y 316 (428)
T KOG0740|consen 239 KVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARR--RFVKRLY 316 (428)
T ss_pred HHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHH--Hhhceee
Confidence 3389999999999999999999 9999999
Q ss_pred cccCCHHHHHHHHHHhhcccchhhH-HHHHHHHH-cCCCCHHHHHHHHccccccc
Q 048723 91 MSYCCFEAFMVLAKSYLDIESHAFF-AEINSLLA-ETNMASADVAENLMPKSDEE 143 (236)
Q Consensus 91 ~~~p~~~~~~~i~~~~l~~~~~~~~-~~i~~ll~-~~gls~a~i~~~l~~~~~~~ 143 (236)
++.|+.+.|..+|..++....+.+. .++..++. +.|||++||.++|...+...
T Consensus 317 iplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p 371 (428)
T KOG0740|consen 317 IPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGP 371 (428)
T ss_pred ecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCc
Confidence 9999999999999999887744433 56677776 78999999998888644333
No 43
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=9.2e-14 Score=125.51 Aligned_cols=108 Identities=25% Similarity=0.330 Sum_probs=86.9
Q ss_pred CCCcceEEECCCCCChHHHHHHHHhhcCCcc-------------------------------------------------
Q 048723 29 AWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------------------------------- 59 (236)
Q Consensus 29 ~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------------------------------- 59 (236)
.+-|.++||||||||||++++-||...+.++
T Consensus 382 apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk 461 (630)
T KOG0742|consen 382 APFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK 461 (630)
T ss_pred chhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch
Confidence 3456699999999999999999999999888
Q ss_pred ---------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcc-------cc
Q 048723 60 ---------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDI-------ES 111 (236)
Q Consensus 60 ---------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~-------~~ 111 (236)
+...+++++||++..||.++-+ |+|.+++|++|-.++|..|++.|+.. ..
T Consensus 462 tymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~ 539 (630)
T KOG0742|consen 462 TYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSG 539 (630)
T ss_pred hhhcHHHHHHHHHHHHHhcccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCC
Confidence 3378899999999999999999 99999999999999999998887641 01
Q ss_pred h--------------------hhHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723 112 H--------------------AFFAEINSLLA-ETNMASADVAENLMP 138 (236)
Q Consensus 112 ~--------------------~~~~~i~~ll~-~~gls~a~i~~~l~~ 138 (236)
. .....+...+. +.|||+.+|..++..
T Consensus 540 ~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~ 587 (630)
T KOG0742|consen 540 KPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVAS 587 (630)
T ss_pred CCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 0 01122233333 789999999877775
No 44
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.46 E-value=1.8e-13 Score=117.15 Aligned_cols=138 Identities=16% Similarity=0.266 Sum_probs=112.9
Q ss_pred HHHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcccEE
Q 048723 12 DLKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRI 89 (236)
Q Consensus 12 ~v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d~~i 89 (236)
.+...|.....++++++.+..| ++|+||+||||||+++.|.+...++ .|-|.+...++..+|+..+|+ ++.++|
T Consensus 6 nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr-~IGYvi 81 (309)
T COG1125 6 NVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRR-KIGYVI 81 (309)
T ss_pred eeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHH-hhhhhh
Confidence 3445566788899999999999 8899999999999999999999999 899999999999999977775 788777
Q ss_pred ----ecccCCHHHHHHHHHHhhcccchhhHHHHHHHHHcCCCCHHHHHHHHcc-cccccChHHHHHHHH
Q 048723 90 ----EMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLAETNMASADVAENLMP-KSDEEDADSCLKNLI 153 (236)
Q Consensus 90 ----~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~~~gls~a~i~~~l~~-~~~~~~~~~~~~~~~ 153 (236)
.||.-+..+--.+.-.+++|.......++..++...|+.|++..+.+-. .|+++..++-+.+.+
T Consensus 82 QqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RAL 150 (309)
T COG1125 82 QQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARAL 150 (309)
T ss_pred hhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHH
Confidence 4666676666667778888988888899999999999999888776665 666666665544433
No 45
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1e-12 Score=115.69 Aligned_cols=78 Identities=33% Similarity=0.440 Sum_probs=69.4
Q ss_pred CCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------------------------------
Q 048723 28 KAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------------------------------ 59 (236)
Q Consensus 28 ~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------------------------------ 59 (236)
+.+.|-+||+||||||||+|+|+||..+....
T Consensus 174 It~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVf 253 (423)
T KOG0744|consen 174 ITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVF 253 (423)
T ss_pred eeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEE
Confidence 45677799999999999999999999886544
Q ss_pred -----------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHH
Q 048723 60 -----------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEA 98 (236)
Q Consensus 60 -----------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~ 98 (236)
..++++++|+|-.+.||.|+.+ |-|.+.++++|+...
T Consensus 254 vLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~a 331 (423)
T KOG0744|consen 254 VLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEA 331 (423)
T ss_pred EEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHH
Confidence 3489999999999999999999 999999999999999
Q ss_pred HHHHHHHhh
Q 048723 99 FMVLAKSYL 107 (236)
Q Consensus 99 ~~~i~~~~l 107 (236)
+..|++..+
T Consensus 332 i~~Ilksci 340 (423)
T KOG0744|consen 332 IYEILKSCI 340 (423)
T ss_pred HHHHHHHHH
Confidence 999988763
No 46
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.35 E-value=2.4e-12 Score=99.00 Aligned_cols=59 Identities=47% Similarity=0.803 Sum_probs=52.7
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCcc------------------------------------------------------
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYDL------------------------------------------------------ 59 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~~------------------------------------------------------ 59 (236)
+||+||||||||++++.+|..++.++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 68999999999999999999999877
Q ss_pred -------------------cCceEEEEeecCccccchHHHhcCCcccEEeccc
Q 048723 60 -------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSY 93 (236)
Q Consensus 60 -------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~ 93 (236)
.+.+++|++||+++.+|++++| +||+..|+++.
T Consensus 81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 1358999999999999999998 89999998863
No 47
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.28 E-value=3.7e-11 Score=101.79 Aligned_cols=103 Identities=20% Similarity=0.312 Sum_probs=72.2
Q ss_pred cceEEECCCCCChHHHHHHHHhhcCCcc----------------------------------------------------
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLNYDL---------------------------------------------------- 59 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~~~~---------------------------------------------------- 59 (236)
..++||||||+||||||+.||++++.++
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~i 130 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKI 130 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEE
T ss_pred ceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeE
Confidence 3499999999999999999999999988
Q ss_pred ----------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccchhhHHH-HHHHH
Q 048723 60 ----------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFAE-INSLL 122 (236)
Q Consensus 60 ----------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~~~~~~-i~~ll 122 (236)
...--+|++|++...|+.+|+. ||..+..+.+++.++...|+++....-......+ +..++
T Consensus 131 diiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia 208 (233)
T PF05496_consen 131 DIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIA 208 (233)
T ss_dssp EEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHH
T ss_pred EEEeccccccceeeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHH
Confidence 1145678999999999999988 9988889999999999999987655444444433 34444
Q ss_pred HcCCCCHHHHHHHHc
Q 048723 123 AETNMASADVAENLM 137 (236)
Q Consensus 123 ~~~gls~a~i~~~l~ 137 (236)
....-+|. |++.+.
T Consensus 209 ~rsrGtPR-iAnrll 222 (233)
T PF05496_consen 209 RRSRGTPR-IANRLL 222 (233)
T ss_dssp HCTTTSHH-HHHHHH
T ss_pred HhcCCChH-HHHHHH
Confidence 55666777 555544
No 48
>CHL00181 cbbX CbbX; Provisional
Probab=99.19 E-value=7.7e-10 Score=97.72 Aligned_cols=104 Identities=23% Similarity=0.321 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCC-cc--eEEECCCCCChHHHHHHHHhhcCC-------cc-------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWK-RG--YLLYGPPGTGKSTMIAAMANFLNY-------DL------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~-rg--~lL~GPpGtGKTtlakaia~~l~~-------~~------------- 59 (236)
+++|++|.+.+.. ..........|+..+ +| ++|+|||||||||+|+++|..+.. ++
T Consensus 29 ~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~ 107 (287)
T CHL00181 29 APVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYI 107 (287)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHh
Confidence 3567777665533 333456667777654 34 899999999999999999886521 11
Q ss_pred ---------------------------------------------------cCceEEEEeecC--cc---ccchHHHhcC
Q 048723 60 ---------------------------------------------------VGEKGIVFTTNY--VD---KLDPALIRRG 83 (236)
Q Consensus 60 ---------------------------------------------------~~~~~vi~ttN~--~~---~ld~al~r~g 83 (236)
.+..+||++++. ++ .++|++++
T Consensus 108 g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~s-- 185 (287)
T CHL00181 108 GHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSS-- 185 (287)
T ss_pred ccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHH--
Confidence 124566666642 11 23588888
Q ss_pred CcccEEecccCCHHHHHHHHHHhhcc
Q 048723 84 RMDKRIEMSYCCFEAFMVLAKSYLDI 109 (236)
Q Consensus 84 R~d~~i~~~~p~~~~~~~i~~~~l~~ 109 (236)
||+.+|.|+.++.+++..|+..++..
T Consensus 186 R~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 186 RIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred hCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999988753
No 49
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.18 E-value=2.7e-11 Score=101.54 Aligned_cols=133 Identities=17% Similarity=0.215 Sum_probs=85.3
Q ss_pred HHHHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc--ccCceEEEEeecCc--cccchHHHhcCC
Q 048723 11 KDLKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD--LVGEKGIVFTTNYV--DKLDPALIRRGR 84 (236)
Q Consensus 11 ~~v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~--~~~~~~vi~ttN~~--~~ld~al~r~gR 84 (236)
+++..||+..+.+.++++.++.+ ..|+||+||||||+++++.+..+.. +.-.|-|.+.+..+ ..+|+..+|+ |
T Consensus 11 ~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr-~ 89 (253)
T COG1117 11 RDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRR-R 89 (253)
T ss_pred cceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHH-H
Confidence 45777889999999999999888 7899999999999999999876533 11134444444333 3567766664 8
Q ss_pred cccEEecccCCHHHHHHHHH---Hhhccc-------------chhhHHHHHHHHH--cCCCCHHHHHHHHcccccccC
Q 048723 85 MDKRIEMSYCCFEAFMVLAK---SYLDIE-------------SHAFFAEINSLLA--ETNMASADVAENLMPKSDEED 144 (236)
Q Consensus 85 ~d~~i~~~~p~~~~~~~i~~---~~l~~~-------------~~~~~~~i~~ll~--~~gls~a~i~~~l~~~~~~~~ 144 (236)
+.+++.-+.|-......-+- +..+.. ...+.+++..-+. ..++|++|-+++|++++.+-.
T Consensus 90 vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~ 167 (253)
T COG1117 90 VGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVK 167 (253)
T ss_pred heeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcC
Confidence 98888877775422211110 011111 1123344444443 458899999999987544433
No 50
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.18 E-value=9.9e-10 Score=95.49 Aligned_cols=103 Identities=21% Similarity=0.269 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhhhChhHHhhhCCCCCc---ceEEECCCCCChHHHHHHHHhhcC---C----cc--------------
Q 048723 4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKR---GYLLYGPPGTGKSTMIAAMANFLN---Y----DL-------------- 59 (236)
Q Consensus 4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~~r---g~lL~GPpGtGKTtlakaia~~l~---~----~~-------------- 59 (236)
++|++|.+.+... .........|+.... +++|+|||||||||++++||+.+. . .+
T Consensus 13 ~vk~~i~~~~~~~-~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g 91 (261)
T TIGR02881 13 EVKALIKEIYAWI-QINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIG 91 (261)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhcc
Confidence 4667776654333 222344455665443 389999999999999999997641 0 00
Q ss_pred -------------------------------------------------cCceEEEEeecC-----ccccchHHHhcCCc
Q 048723 60 -------------------------------------------------VGEKGIVFTTNY-----VDKLDPALIRRGRM 85 (236)
Q Consensus 60 -------------------------------------------------~~~~~vi~ttN~-----~~~ld~al~r~gR~ 85 (236)
.+..+++++++. ...++|++++ ||
T Consensus 92 ~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~s--Rf 169 (261)
T TIGR02881 92 HTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRS--RF 169 (261)
T ss_pred chHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHh--cc
Confidence 112355555432 2246788888 89
Q ss_pred ccEEecccCCHHHHHHHHHHhhcc
Q 048723 86 DKRIEMSYCCFEAFMVLAKSYLDI 109 (236)
Q Consensus 86 d~~i~~~~p~~~~~~~i~~~~l~~ 109 (236)
+..|.|+.++.+++..|++.++..
T Consensus 170 ~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 170 PISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred ceEEEECCCCHHHHHHHHHHHHHH
Confidence 889999999999999999887653
No 51
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.15 E-value=4.7e-10 Score=97.57 Aligned_cols=73 Identities=26% Similarity=0.373 Sum_probs=65.2
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCcc------------------------------------------------------
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYDL------------------------------------------------------ 59 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~~------------------------------------------------------ 59 (236)
+||+||||.||||||+.||++++..+
T Consensus 55 vLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI 134 (332)
T COG2255 55 VLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDI 134 (332)
T ss_pred EEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEE
Confidence 99999999999999999999999888
Q ss_pred --------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 60 --------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 60 --------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
...--+|++|.+...|..+|+. ||..+..+.+++.++...|+.+.-.
T Consensus 135 ~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~ 195 (332)
T COG2255 135 IIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAK 195 (332)
T ss_pred EEccCCccceEeccCCCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHH
Confidence 1255788999999999999998 9999999999999999999887643
No 52
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.13 E-value=3.6e-10 Score=102.27 Aligned_cols=71 Identities=32% Similarity=0.449 Sum_probs=58.9
Q ss_pred cceEEECCCCCChHHHHHHHHhhcCCcc----------------------------------------------------
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLNYDL---------------------------------------------------- 59 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~~~~---------------------------------------------------- 59 (236)
.+++|+|||||||||+++.||+..+..|
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v 128 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHV 128 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhh
Confidence 3499999999999999999999999998
Q ss_pred -cCceEEEEee--cCccccchHHHhcCCcccEEecccCCHHHHHHHHHH
Q 048723 60 -VGEKGIVFTT--NYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKS 105 (236)
Q Consensus 60 -~~~~~vi~tt--N~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~ 105 (236)
.|.+++|++| |+--.+.++++.++ +++.+...+.+....++++
T Consensus 129 E~G~iilIGATTENPsF~ln~ALlSR~---~vf~lk~L~~~di~~~l~r 174 (436)
T COG2256 129 ENGTIILIGATTENPSFELNPALLSRA---RVFELKPLSSEDIKKLLKR 174 (436)
T ss_pred cCCeEEEEeccCCCCCeeecHHHhhhh---heeeeecCCHHHHHHHHHH
Confidence 4567777766 77778999999944 5578887888877777776
No 53
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.11 E-value=2.9e-09 Score=93.91 Aligned_cols=103 Identities=20% Similarity=0.278 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHhhhChhHHhhhCCCC---CcceEEECCCCCChHHHHHHHHhhcCC-------cc--------------
Q 048723 4 KKKEEIKKDLKKFSEGKEYCAKIGKAW---KRGYLLYGPPGTGKSTMIAAMANFLNY-------DL-------------- 59 (236)
Q Consensus 4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~---~rg~lL~GPpGtGKTtlakaia~~l~~-------~~-------------- 59 (236)
++|++|.+.+. +...+......|+.. ..+++|+||||||||++|+++|..+.. ++
T Consensus 29 ~vk~~i~e~~~-~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g 107 (284)
T TIGR02880 29 PVKTRIREIAA-LLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIG 107 (284)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcc
Confidence 56666666443 345556677778764 335999999999999999888876631 11
Q ss_pred --------------------------------------------------cCceEEEEeecC--ccc---cchHHHhcCC
Q 048723 60 --------------------------------------------------VGEKGIVFTTNY--VDK---LDPALIRRGR 84 (236)
Q Consensus 60 --------------------------------------------------~~~~~vi~ttN~--~~~---ld~al~r~gR 84 (236)
.+++++|++++. ++. ++|++++ |
T Consensus 108 ~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~s--R 185 (284)
T TIGR02880 108 HTAPKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSS--R 185 (284)
T ss_pred cchHHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHh--h
Confidence 124566666543 333 4788888 9
Q ss_pred cccEEecccCCHHHHHHHHHHhhcc
Q 048723 85 MDKRIEMSYCCFEAFMVLAKSYLDI 109 (236)
Q Consensus 85 ~d~~i~~~~p~~~~~~~i~~~~l~~ 109 (236)
|+..|.|+.++.+.+..|+..++..
T Consensus 186 ~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 186 VAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred CCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999988754
No 54
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.11 E-value=1.3e-10 Score=104.64 Aligned_cols=144 Identities=17% Similarity=0.200 Sum_probs=91.3
Q ss_pred HHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcccEEe
Q 048723 13 LKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIE 90 (236)
Q Consensus 13 v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~ 90 (236)
+...|.+...++++++.+.+| +.|.|||||||||++++||++..++ .|.|.+.+.++..+||.- | .+.+++
T Consensus 11 v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~k-R--~ig~VF- 83 (352)
T COG3842 11 VSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEK-R--PIGMVF- 83 (352)
T ss_pred eeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhh-c--ccceee-
Confidence 334456677889999999999 7899999999999999999999998 899999999999999863 3 454444
Q ss_pred ccc---CCHHHHHHHHHHh--hcccc-hhhHHHHHHHHHc-----------CCCCHHHHHHHHcccccccChHHH-HHHH
Q 048723 91 MSY---CCFEAFMVLAKSY--LDIES-HAFFAEINSLLAE-----------TNMASADVAENLMPKSDEEDADSC-LKNL 152 (236)
Q Consensus 91 ~~~---p~~~~~~~i~~~~--l~~~~-~~~~~~i~~ll~~-----------~gls~a~i~~~l~~~~~~~~~~~~-~~~~ 152 (236)
.+| |...-...+.--+ ..... .....++.++++. ..+|+++-++...+++....+.+. +..=
T Consensus 84 Q~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEP 163 (352)
T COG3842 84 QSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEP 163 (352)
T ss_pred cCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCc
Confidence 222 2222222221111 11111 1122344444443 256888888888887777777543 3333
Q ss_pred HHHHHHHHHHH
Q 048723 153 IEALKVAKEEA 163 (236)
Q Consensus 153 ~~~L~~~~~~~ 163 (236)
+++|..+..+.
T Consensus 164 lSaLD~kLR~~ 174 (352)
T COG3842 164 LSALDAKLREQ 174 (352)
T ss_pred ccchhHHHHHH
Confidence 44444444333
No 55
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.07 E-value=1.2e-10 Score=100.77 Aligned_cols=63 Identities=22% Similarity=0.378 Sum_probs=53.9
Q ss_pred hhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 16 FSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 16 ~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
.|....++++++|.++.| ++|+||||||||||+|+|++.+.+. .|.|...+..+..+++..+.
T Consensus 11 ~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelA 75 (258)
T COG1120 11 GYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELA 75 (258)
T ss_pred EECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHh
Confidence 345677899999999999 8899999999999999999999988 78888888878877765543
No 56
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=7e-10 Score=106.88 Aligned_cols=110 Identities=22% Similarity=0.247 Sum_probs=90.9
Q ss_pred hCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc----------------------------------------------
Q 048723 26 IGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL---------------------------------------------- 59 (236)
Q Consensus 26 ~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~---------------------------------------------- 59 (236)
.+++....+||+|+|||||||+.++.|.+++.++
T Consensus 426 ~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id 505 (953)
T KOG0736|consen 426 ALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGID 505 (953)
T ss_pred hccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeec
Confidence 3455566699999999999999999999999998
Q ss_pred -------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccchhh
Q 048723 60 -------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAF 114 (236)
Q Consensus 60 -------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~~~ 114 (236)
....+|+++++.++.+|+.+++ -|-..|.++.|+.++|..|++.|+.......
T Consensus 506 ~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~ 583 (953)
T KOG0736|consen 506 QDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQ 583 (953)
T ss_pred CCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccch
Confidence 2378999999999999998887 6778899999999999999999987555444
Q ss_pred HHHHHHHHH-cCCCCHHHHHHHHc
Q 048723 115 FAEINSLLA-ETNMASADVAENLM 137 (236)
Q Consensus 115 ~~~i~~ll~-~~gls~a~i~~~l~ 137 (236)
.....+++. +.||+.+++.....
T Consensus 584 ~v~~k~~a~~t~gfs~~~L~~l~~ 607 (953)
T KOG0736|consen 584 DVNLKQLARKTSGFSFGDLEALVA 607 (953)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHhc
Confidence 445556665 88999999875544
No 57
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.06 E-value=1.1e-09 Score=98.33 Aligned_cols=102 Identities=19% Similarity=0.216 Sum_probs=74.8
Q ss_pred CcceEEECCCCCChHHHHHHHHhhcCCcc-------------------------------------------------c-
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFLNYDL-------------------------------------------------V- 60 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l~~~~-------------------------------------------------~- 60 (236)
.+.++|+||||||||++++++|+.++..+ .
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~ 130 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFR 130 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcc
Confidence 45699999999999999999999987765 0
Q ss_pred ------------------CceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccchhhHH-HHHHH
Q 048723 61 ------------------GEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFA-EINSL 121 (236)
Q Consensus 61 ------------------~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~~~~~-~i~~l 121 (236)
....+|++||+...+++++++ ||+..+.++.++.+.+..++............. .+..+
T Consensus 131 ~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~i 208 (328)
T PRK00080 131 LDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEI 208 (328)
T ss_pred eeeeeccCccccceeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHH
Confidence 125678899999999999988 888889999999999999988776543333222 23344
Q ss_pred HHcCCCCHHHHHH
Q 048723 122 LAETNMASADVAE 134 (236)
Q Consensus 122 l~~~gls~a~i~~ 134 (236)
+...+-+|..+..
T Consensus 209 a~~~~G~pR~a~~ 221 (328)
T PRK00080 209 ARRSRGTPRIANR 221 (328)
T ss_pred HHHcCCCchHHHH
Confidence 4444444443333
No 58
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.05 E-value=3.2e-09 Score=93.85 Aligned_cols=76 Identities=25% Similarity=0.371 Sum_probs=63.9
Q ss_pred CcceEEECCCCCChHHHHHHHHhhcCCcc---------------------------------------------------
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFLNYDL--------------------------------------------------- 59 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l~~~~--------------------------------------------------- 59 (236)
.+.++|+||||||||+++++||+.++.++
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~ 109 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFR 109 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhh
Confidence 34599999999999999999999987665
Q ss_pred -----------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 60 -----------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 60 -----------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
.....++++||+...+++++++ ||...+.+..++.++...+++....
T Consensus 110 ~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~ 173 (305)
T TIGR00635 110 LDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAG 173 (305)
T ss_pred eeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHH
Confidence 0126788888999999999988 8888889999999998888887654
No 59
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.03 E-value=4e-10 Score=101.09 Aligned_cols=117 Identities=14% Similarity=0.184 Sum_probs=77.3
Q ss_pred HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcccEE--ecccCCHH
Q 048723 22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRI--EMSYCCFE 97 (236)
Q Consensus 22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d~~i--~~~~p~~~ 97 (236)
.+.++++.+..| +.|+||+||||||++++||+...++ +|-|.+..+++..++|.-+ .+-+++ +--||...
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R---~iamVFQ~yALyPhmt 91 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKR---GIAMVFQNYALYPHMT 91 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHC---CEEEEeCCccccCCCc
Confidence 788899999999 8899999999999999999999999 8999999999999999753 353433 22244444
Q ss_pred HHHHHHHHhh--cccchhhHHHHHHHHHc-----------CCCCHHHHHHHHcccccccC
Q 048723 98 AFMVLAKSYL--DIESHAFFAEINSLLAE-----------TNMASADVAENLMPKSDEED 144 (236)
Q Consensus 98 ~~~~i~~~~l--~~~~~~~~~~i~~ll~~-----------~gls~a~i~~~l~~~~~~~~ 144 (236)
-+..|.-..- +........++..+++. ..+|++|-++..+.++....
T Consensus 92 V~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~ 151 (338)
T COG3839 92 VYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRK 151 (338)
T ss_pred HHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcC
Confidence 3333322211 11222233333333332 46788887766665443333
No 60
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.99 E-value=1.1e-09 Score=93.30 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=80.3
Q ss_pred HHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh--cCCcccEE
Q 048723 14 KKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR--RGRMDKRI 89 (236)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r--~gR~d~~i 89 (236)
...+.+..+++++++.+++| +.++||+|||||||+++|.+++.++ .+-|.+.+.++..++...+. +.|+...+
T Consensus 15 ~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlF 91 (263)
T COG1127 15 TKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLF 91 (263)
T ss_pred eeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEe
Confidence 34457778999999999999 7789999999999999999999998 77777777778887763321 11787777
Q ss_pred eccc-----CCHHHHHHHHHHhhcccchhhHHHHHHHHHcCCCCHH
Q 048723 90 EMSY-----CCFEAFMVLAKSYLDIESHAFFAEINSLLAETNMASA 130 (236)
Q Consensus 90 ~~~~-----p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~~~gls~a 130 (236)
+++. ..++.....++.|...........+.--++..|+.++
T Consensus 92 Q~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~ 137 (263)
T COG1127 92 QQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGA 137 (263)
T ss_pred eccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChh
Confidence 6543 3355555556666665444444444444556677665
No 61
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.99 E-value=1e-09 Score=93.59 Aligned_cols=118 Identities=13% Similarity=0.122 Sum_probs=73.4
Q ss_pred HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHH
Q 048723 22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAF 99 (236)
Q Consensus 22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~ 99 (236)
.++++++.+.+| +-|+||+|||||||+++|++...+. .|-|.+.+.......++-.+.+-+.+++.-++-+..-+
T Consensus 22 ~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~ 98 (252)
T COG1124 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPR 98 (252)
T ss_pred hhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccCcc
Confidence 899999999999 7899999999999999999999888 78888877655443322222224555555555444333
Q ss_pred HHHHHHh----hcccchhhHHHHHHHHHcC------------CCCHHHHHHHHcccccc
Q 048723 100 MVLAKSY----LDIESHAFFAEINSLLAET------------NMASADVAENLMPKSDE 142 (236)
Q Consensus 100 ~~i~~~~----l~~~~~~~~~~i~~ll~~~------------gls~a~i~~~l~~~~~~ 142 (236)
..+.... ..........++..++... .+|++|.++.+++++..
T Consensus 99 ~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~ 157 (252)
T COG1124 99 RTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALI 157 (252)
T ss_pred hhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhc
Confidence 3333322 1111112223355555544 45777777776654333
No 62
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.97 E-value=8.3e-10 Score=92.76 Aligned_cols=74 Identities=28% Similarity=0.407 Sum_probs=55.3
Q ss_pred HHHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc-cccchHHHhcCCcccE
Q 048723 12 DLKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV-DKLDPALIRRGRMDKR 88 (236)
Q Consensus 12 ~v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~-~~ld~al~r~gR~d~~ 88 (236)
++..+|+..++++++++.+.+| ++++||+|||||||+++|...-.++ .|.|.+.+..+ ...+-..+|. ++.++
T Consensus 7 ~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~-~vGmV 82 (240)
T COG1126 7 NLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRR-KVGMV 82 (240)
T ss_pred eeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHH-hcCee
Confidence 3556678888999999999999 8899999999999999999998888 77777766333 2223333332 56555
Q ss_pred E
Q 048723 89 I 89 (236)
Q Consensus 89 i 89 (236)
+
T Consensus 83 F 83 (240)
T COG1126 83 F 83 (240)
T ss_pred c
Confidence 5
No 63
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=7.7e-09 Score=87.62 Aligned_cols=73 Identities=26% Similarity=0.398 Sum_probs=64.4
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcccEEecccCC
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCC 95 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~ 95 (236)
+++++.+++.++.| ..|.||||||||||+.+|++.-++.++ ++-|++.+.++-.++|..+. |....+-|++|.
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt-~G~I~~~GedI~~l~~~ERA--r~GifLafQ~P~ 91 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVT-EGEILFDGEDILELSPDERA--RAGIFLAFQYPV 91 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEe-cceEEECCcccccCCHhHHH--hcCCEEeecCCc
Confidence 48899999999999 789999999999999999999987754 47788999999999999887 777778888885
No 64
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.95 E-value=4.8e-09 Score=86.66 Aligned_cols=72 Identities=22% Similarity=0.386 Sum_probs=57.8
Q ss_pred HHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch---HHHhcCCcccE
Q 048723 14 KKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP---ALIRRGRMDKR 88 (236)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~---al~r~gR~d~~ 88 (236)
..|..++..+++++|.+++| +.|+||+|+||||++|.|.....++ .+.+++...++..+.. +++|+ ++..+
T Consensus 9 k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR-~IGvV 84 (223)
T COG2884 9 KAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRR-QIGVV 84 (223)
T ss_pred hhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhh-eeeeE
Confidence 34555677999999999999 7789999999999999999999998 8888888877777653 34553 66544
Q ss_pred E
Q 048723 89 I 89 (236)
Q Consensus 89 i 89 (236)
+
T Consensus 85 F 85 (223)
T COG2884 85 F 85 (223)
T ss_pred e
Confidence 4
No 65
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.93 E-value=2.9e-09 Score=90.54 Aligned_cols=66 Identities=21% Similarity=0.354 Sum_probs=52.9
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch---HHHhcCCcccEE
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP---ALIRRGRMDKRI 89 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~---al~r~gR~d~~i 89 (236)
..++++++.+.+| +.++||+|||||||+..|++...++ .+.+++...++..++. +..|+..+..++
T Consensus 19 ~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvF 89 (226)
T COG1136 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVF 89 (226)
T ss_pred EecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEEC
Confidence 5788999999999 8899999999999999999999887 7888888777777775 333433454444
No 66
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.92 E-value=1.1e-08 Score=97.45 Aligned_cols=43 Identities=26% Similarity=0.153 Sum_probs=32.8
Q ss_pred eEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 63 KGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 63 ~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
.++.+|||+++.++|++++ |+ ..|.|+.++.+++..+++.++.
T Consensus 235 rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei~~Il~~~a~ 277 (531)
T TIGR02902 235 RLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDEEIKEIAKNAAE 277 (531)
T ss_pred EEEEEecCCcccCChHHhh--hh-heeeCCCCCHHHHHHHHHHHHH
Confidence 3455667889999999988 76 5677777778888888887654
No 67
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=1.3e-08 Score=95.75 Aligned_cols=75 Identities=27% Similarity=0.411 Sum_probs=58.2
Q ss_pred CCcceEEECCCCCChHHHHHHHHhhcCCc------------------------c--------------------------
Q 048723 30 WKRGYLLYGPPGTGKSTMIAAMANFLNYD------------------------L-------------------------- 59 (236)
Q Consensus 30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~------------------------~-------------------------- 59 (236)
++.+++|+|||||||||+|+++|+.++.. +
T Consensus 35 l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~ 114 (472)
T PRK14962 35 ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPM 114 (472)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChh
Confidence 44569999999999999999999987641 1
Q ss_pred ------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723 60 ------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL 107 (236)
Q Consensus 60 ------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l 107 (236)
.+..++|++|+.+..+++++++ |+ ..+.|..++.+....+++...
T Consensus 115 ~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~ 189 (472)
T PRK14962 115 EGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVA 189 (472)
T ss_pred cCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHH
Confidence 2467777788888899999988 65 578888888777666666543
No 68
>PRK04195 replication factor C large subunit; Provisional
Probab=98.87 E-value=3.7e-08 Score=92.92 Aligned_cols=76 Identities=26% Similarity=0.393 Sum_probs=59.3
Q ss_pred CcceEEECCCCCChHHHHHHHHhhcCCcc---------------------------------------------------
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFLNYDL--------------------------------------------------- 59 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l~~~~--------------------------------------------------- 59 (236)
++.++|+|||||||||++++||+.++.++
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~ 118 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGG 118 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhH
Confidence 56799999999999999999999997655
Q ss_pred ---------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 60 ---------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 60 ---------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
.....+|+++|++..+++..+| +....|.|+.|+...+..+++..+.
T Consensus 119 ~~aL~~~l~~~~~~iIli~n~~~~~~~k~Lr--sr~~~I~f~~~~~~~i~~~L~~i~~ 174 (482)
T PRK04195 119 ARAILELIKKAKQPIILTANDPYDPSLRELR--NACLMIEFKRLSTRSIVPVLKRICR 174 (482)
T ss_pred HHHHHHHHHcCCCCEEEeccCccccchhhHh--ccceEEEecCCCHHHHHHHHHHHHH
Confidence 1145577888988888773344 3447799999998888877777654
No 69
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.85 E-value=1.3e-09 Score=94.10 Aligned_cols=49 Identities=27% Similarity=0.386 Sum_probs=40.0
Q ss_pred hhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEE
Q 048723 16 FSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVF 67 (236)
Q Consensus 16 ~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ 67 (236)
.|.+..+++++++.+++| +.|+||||+|||||+|+|.+.+.+. .|-|.+
T Consensus 13 ~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~ 63 (254)
T COG1121 13 SYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKI 63 (254)
T ss_pred EECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEE
Confidence 344325899999999998 7899999999999999999999877 444443
No 70
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.83 E-value=8.1e-09 Score=83.95 Aligned_cols=61 Identities=25% Similarity=0.435 Sum_probs=54.8
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
.+..++.++++...+| ++++||+|||||||.|++|....++ .|.+.+-+.+...++|...|
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~---~G~l~f~Ge~vs~~~pea~R 76 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEAYR 76 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCC---CceEEEcCccccccChHHHH
Confidence 4567889999999999 8999999999999999999999998 89999999999999886665
No 71
>PRK06893 DNA replication initiation factor; Validated
Probab=98.83 E-value=1.9e-08 Score=85.92 Aligned_cols=77 Identities=16% Similarity=0.226 Sum_probs=56.5
Q ss_pred cceEEECCCCCChHHHHHHHHhhcC---Cc--c-----------------------------------------------
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLN---YD--L----------------------------------------------- 59 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~---~~--~----------------------------------------------- 59 (236)
+.++|+||||||||+|+++|++.+. .. +
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~ 119 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVLENLEQQDLVCLDDLQAVIGNEEWELAIFDLFNR 119 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhhHHHHhhcccCCEEEEeChhhhcCChHHHHHHHHHHHH
Confidence 4479999999999999999998751 11 1
Q ss_pred ---cCceEEEEeec-Cccccc---hHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 60 ---VGEKGIVFTTN-YVDKLD---PALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 60 ---~~~~~vi~ttN-~~~~ld---~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
.+..++++|+| .+..++ +.+.++.+.+..+.+..|+.+.+..+++....
T Consensus 120 ~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~ 175 (229)
T PRK06893 120 IKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAY 175 (229)
T ss_pred HHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHH
Confidence 12334455554 455554 78888666678899999999999999887653
No 72
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.83 E-value=8.1e-08 Score=93.11 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=28.1
Q ss_pred eecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 68 TTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 68 ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
|++.++.+++++++ |+. .+.|+.++.+.+..|++.++.
T Consensus 330 Tt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 330 TTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred ccccccccCHHHHh--cee-EEEeCCCCHHHHHHHHHHHHH
Confidence 55678888998877 774 567777778888888887643
No 73
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.82 E-value=1.2e-08 Score=86.70 Aligned_cols=61 Identities=23% Similarity=0.444 Sum_probs=52.1
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
.....+.++++.++.| +.++||+|+|||||+++|++..++. .+-+++....+..+....+|
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr 77 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELR 77 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHH
Confidence 5566788999999999 8899999999999999999988887 77888888778887765554
No 74
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.82 E-value=1.1e-08 Score=93.24 Aligned_cols=60 Identities=22% Similarity=0.378 Sum_probs=51.0
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHH
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALI 80 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~ 80 (236)
.....+++++|.+.+| ++|+||+|||||||+++|++...+. .|.|.+.+.++..+++..+
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~ 65 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVEL 65 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHH
Confidence 4455788999999999 8899999999999999999999888 7878888877777777544
No 75
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=3.1e-08 Score=92.74 Aligned_cols=74 Identities=18% Similarity=0.359 Sum_probs=58.4
Q ss_pred CcceEEECCCCCChHHHHHHHHhhcCCc------------------------c---------------------------
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFLNYD------------------------L--------------------------- 59 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l~~~------------------------~--------------------------- 59 (236)
+..++|+|||||||||+++++|+.++.. +
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~ 119 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMG 119 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhc
Confidence 4458999999999999999999998752 1
Q ss_pred -----------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723 60 -----------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL 107 (236)
Q Consensus 60 -----------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l 107 (236)
.+.++||++|+.++.|++.++. |. ..+.|..++.+.....++..+
T Consensus 120 g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~ 193 (484)
T PRK14956 120 GKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLC 193 (484)
T ss_pred CCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHH
Confidence 3478889999999999999998 54 457777777766666655553
No 76
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.80 E-value=9.2e-08 Score=83.34 Aligned_cols=43 Identities=26% Similarity=0.396 Sum_probs=35.2
Q ss_pred EEEEeecCc-----cccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcc
Q 048723 64 GIVFTTNYV-----DKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDI 109 (236)
Q Consensus 64 ~vi~ttN~~-----~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~ 109 (236)
.+|+|+|.. ..+++++++ || ..+.+++|+.+.-..|+..+.+.
T Consensus 153 rvIaTsN~~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~~ 200 (262)
T TIGR02640 153 RVIFTSNPVEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTDV 200 (262)
T ss_pred EEEEeeCCccccceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhCC
Confidence 588999975 356889998 88 78999999998888898887643
No 77
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.80 E-value=9.6e-08 Score=82.03 Aligned_cols=97 Identities=21% Similarity=0.285 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
+.+|+.|.+++..|+.+. +...+||+|++|||||++++++.+.+...-
T Consensus 33 e~Qk~~l~~Nt~~Fl~G~---------pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~l~~ 103 (249)
T PF05673_consen 33 ERQKEALIENTEQFLQGL---------PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDLLRD 103 (249)
T ss_pred HHHHHHHHHHHHHHHcCC---------CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHHHhc
Confidence 356778888887776543 455599999999999999999999875432
Q ss_pred -----------------------------------cCceEEEEeecCccccchHHHh---------------------cC
Q 048723 60 -----------------------------------VGEKGIVFTTNYVDKLDPALIR---------------------RG 83 (236)
Q Consensus 60 -----------------------------------~~~~~vi~ttN~~~~ld~al~r---------------------~g 83 (236)
..+++|.+|+|+-+.++..+.. .-
T Consensus 104 ~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsD 183 (249)
T PF05673_consen 104 RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSD 183 (249)
T ss_pred CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHH
Confidence 3489999999977666653222 11
Q ss_pred CcccEEecccCCHHHHHHHHHHhhc
Q 048723 84 RMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 84 R~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
||...|.|..|+.+....|+..+..
T Consensus 184 RFGL~l~F~~~~q~~YL~IV~~~~~ 208 (249)
T PF05673_consen 184 RFGLWLSFYPPDQEEYLAIVRHYAE 208 (249)
T ss_pred hCCcEEEecCCCHHHHHHHHHHHHH
Confidence 8999999999999999999988874
No 78
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.79 E-value=5.4e-08 Score=90.06 Aligned_cols=74 Identities=30% Similarity=0.425 Sum_probs=57.9
Q ss_pred cceEEECCCCCChHHHHHHHHhhcCCcc----------------------------------------------------
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLNYDL---------------------------------------------------- 59 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~~~~---------------------------------------------------- 59 (236)
..++|+|||||||||++++|++.++.++
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~l 116 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHV 116 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHh
Confidence 4599999999999999999999888776
Q ss_pred -cCceEEEEee--cCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 60 -VGEKGIVFTT--NYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 60 -~~~~~vi~tt--N~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
.+.+++|++| |....+++++++ |+ ..+.|..++.+....+++..+.
T Consensus 117 e~~~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~ 165 (413)
T PRK13342 117 EDGTITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALE 165 (413)
T ss_pred hcCcEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHH
Confidence 2345555554 445678999988 66 6788888888888888877653
No 79
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.79 E-value=2.7e-08 Score=93.91 Aligned_cols=106 Identities=20% Similarity=0.238 Sum_probs=64.4
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcC--CcccEEecccCCH
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRG--RMDKRIEMSYCCF 96 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~g--R~d~~i~~~~p~~ 96 (236)
..+++++|.+.+| +.|+|++||||||++++|++.+.+. .+.+++...+ -.+...-++.. ++-++|..++.+.
T Consensus 305 ~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~---~G~i~~~g~~-~~~~~~~~~~~r~~~QmvFQdp~~SL 380 (539)
T COG1123 305 KAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQD-LDLTGGELRRLRRRIQMVFQDPYSSL 380 (539)
T ss_pred eeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEEeCcc-cccccchhhhhhhheEEEEeCccccc
Confidence 4578899999999 8899999999999999999999887 6666665544 22222212211 4545555555443
Q ss_pred HHHHHH-------HHHhhcccchhhHHHHHHHHHcCCCCHH
Q 048723 97 EAFMVL-------AKSYLDIESHAFFAEINSLLAETNMASA 130 (236)
Q Consensus 97 ~~~~~i-------~~~~l~~~~~~~~~~i~~ll~~~gls~a 130 (236)
.-+..+ +..|...........+..+++..++++.
T Consensus 381 nPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~ 421 (539)
T COG1123 381 NPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPE 421 (539)
T ss_pred CccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHH
Confidence 332222 2222222222233456666666666543
No 80
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.78 E-value=1.2e-08 Score=89.59 Aligned_cols=26 Identities=54% Similarity=0.924 Sum_probs=23.9
Q ss_pred cceEEECCCCCChHHHHHHHHhhcCC
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
+.+|||||||||||+.++++|+++..
T Consensus 58 p~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 58 PHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred ceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 44999999999999999999999976
No 81
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.76 E-value=5.6e-08 Score=88.52 Aligned_cols=72 Identities=15% Similarity=0.119 Sum_probs=45.1
Q ss_pred ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccchhhH-HHHHHHHHcCCCCHHHHHHHH
Q 048723 62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFF-AEINSLLAETNMASADVAENL 136 (236)
Q Consensus 62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~~~~-~~i~~ll~~~gls~a~i~~~l 136 (236)
...+|++|++++.+++.++. |. ..+.|..++.++...++...+...+.... ..+..++...+-++.++.+.+
T Consensus 149 ~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l 221 (363)
T PRK14961 149 HIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLL 221 (363)
T ss_pred CeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 56778888888999988887 55 67899999988888777765443322222 223333444444555544444
No 82
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=6.6e-08 Score=92.90 Aligned_cols=100 Identities=17% Similarity=0.285 Sum_probs=81.2
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCcc------------------------------------------------------
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYDL------------------------------------------------------ 59 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~~------------------------------------------------------ 59 (236)
++|.||+|||||.|+++|+.++..+.
T Consensus 434 Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e 513 (952)
T KOG0735|consen 434 ILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNE 513 (952)
T ss_pred EEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCccc
Confidence 99999999999999999999986554
Q ss_pred -------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccchh-
Q 048723 60 -------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHA- 113 (236)
Q Consensus 60 -------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~~- 113 (236)
...+.+|++.+..++|+|-|..+++|+.++.++.|....|..|++..+......
T Consensus 514 ~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~ 593 (952)
T KOG0735|consen 514 NGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDI 593 (952)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhh
Confidence 224688999999999999999999999999999999999999999887644322
Q ss_pred hHHHHHHHHH-cCCCCHHHHH
Q 048723 114 FFAEINSLLA-ETNMASADVA 133 (236)
Q Consensus 114 ~~~~i~~ll~-~~gls~a~i~ 133 (236)
...++.-+.. +.||.+-|+.
T Consensus 594 ~~~dLd~ls~~TEGy~~~DL~ 614 (952)
T KOG0735|consen 594 TMDDLDFLSVKTEGYLATDLV 614 (952)
T ss_pred hhHHHHHHHHhcCCccchhHH
Confidence 2233333333 7899888765
No 83
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.76 E-value=1.3e-08 Score=90.24 Aligned_cols=111 Identities=20% Similarity=0.211 Sum_probs=67.8
Q ss_pred HHHhhh-ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcccEE
Q 048723 13 LKKFSE-GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRI 89 (236)
Q Consensus 13 v~~~~~-~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d~~i 89 (236)
+...+. ...+++++++.+++| +.|.||||+||||++++|++...+. .|-+.+.+.++..=+...++ ++.++.
T Consensus 10 l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~--~igy~~ 84 (293)
T COG1131 10 LTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRR--RIGYVP 84 (293)
T ss_pred eEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHh--heEEEc
Confidence 334455 467899999999999 8899999999999999999999887 66666555443332444555 555544
Q ss_pred ecc--cC--CHHHHHHHHHHhhcccchhhHHHHHHHHHcCCCC
Q 048723 90 EMS--YC--CFEAFMVLAKSYLDIESHAFFAEINSLLAETNMA 128 (236)
Q Consensus 90 ~~~--~p--~~~~~~~i~~~~l~~~~~~~~~~i~~ll~~~gls 128 (236)
+.+ +| +..+...++..+.+.........+..+++..++.
T Consensus 85 ~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~ 127 (293)
T COG1131 85 QEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLE 127 (293)
T ss_pred cCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCc
Confidence 332 22 2333333333333332222334555565554444
No 84
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.75 E-value=5.5e-08 Score=87.00 Aligned_cols=78 Identities=23% Similarity=0.266 Sum_probs=63.6
Q ss_pred CCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------------------------------
Q 048723 28 KAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------------------------------ 59 (236)
Q Consensus 28 ~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------------------------------ 59 (236)
+...+.++|.||||||||++++.||..++.++
T Consensus 61 l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illl 140 (327)
T TIGR01650 61 FAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCF 140 (327)
T ss_pred HhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEe
Confidence 44467799999999999999999999999887
Q ss_pred -----------------------------------cCceEEEEeecCcc------------ccchHHHhcCCcccEEecc
Q 048723 60 -----------------------------------VGEKGIVFTTNYVD------------KLDPALIRRGRMDKRIEMS 92 (236)
Q Consensus 60 -----------------------------------~~~~~vi~ttN~~~------------~ld~al~r~gR~d~~i~~~ 92 (236)
.....+|+|+|... .++.+++. ||-..+.++
T Consensus 141 DEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD--RF~i~~~~~ 218 (327)
T TIGR01650 141 DEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD--RWSIVTTLN 218 (327)
T ss_pred chhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--heeeEeeCC
Confidence 11456788899865 35789999 997778999
Q ss_pred cCCHHHHHHHHHHhh
Q 048723 93 YCCFEAFMVLAKSYL 107 (236)
Q Consensus 93 ~p~~~~~~~i~~~~l 107 (236)
||+.+.-..|+....
T Consensus 219 Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 219 YLEHDNEAAIVLAKA 233 (327)
T ss_pred CCCHHHHHHHHHhhc
Confidence 999988888876553
No 85
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.73 E-value=3.6e-08 Score=82.06 Aligned_cols=124 Identities=19% Similarity=0.298 Sum_probs=84.8
Q ss_pred HHHHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch-----------
Q 048723 11 KDLKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP----------- 77 (236)
Q Consensus 11 ~~v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~----------- 77 (236)
+.+...+....++.++++.++.| ..|+||+|+|||||+..+++.++.+ .|.+.+.+..+...+.
T Consensus 5 ~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~~~s~~LAk~lSILk 81 (252)
T COG4604 5 ENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKELAKKLSILK 81 (252)
T ss_pred hhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeecccCChHHHHHHHHHHH
Confidence 45667778888999999999988 7899999999999999999999998 6767666654444443
Q ss_pred ------------HHHhcCCcccEEecccCCHHHHHHHHHH--hhcccchhhHHHHHHHHHcCCCCHHHHHHHHccccccc
Q 048723 78 ------------ALIRRGRMDKRIEMSYCCFEAFMVLAKS--YLDIESHAFFAEINSLLAETNMASADVAENLMPKSDEE 143 (236)
Q Consensus 78 ------------al~r~gR~d~~i~~~~p~~~~~~~i~~~--~l~~~~~~~~~~i~~ll~~~gls~a~i~~~l~~~~~~~ 143 (236)
.|...|||++ ..+.|+.+.+..+-.. |+... .+ -.+.+. .+|++|-++++.++..++
T Consensus 82 Q~N~i~~rlTV~dLv~FGRfPY--SqGRlt~eD~~~I~~aieyl~L~--~l---~dryLd--~LSGGQrQRAfIAMVlaQ 152 (252)
T COG4604 82 QENHINSRLTVRDLVGFGRFPY--SQGRLTKEDRRIINEAIEYLHLE--DL---SDRYLD--ELSGGQRQRAFIAMVLAQ 152 (252)
T ss_pred hhchhhheeEHHHHhhcCCCcc--cCCCCchHHHHHHHHHHHHhccc--ch---HHHhHH--hcccchhhhhhhheeeec
Confidence 3444666653 3456777777754332 22211 11 122333 688999998888755554
Q ss_pred ChH
Q 048723 144 DAD 146 (236)
Q Consensus 144 ~~~ 146 (236)
+.+
T Consensus 153 dTd 155 (252)
T COG4604 153 DTD 155 (252)
T ss_pred cCc
Confidence 433
No 86
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.73 E-value=2.8e-08 Score=88.23 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=42.9
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccc
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDK 74 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ 74 (236)
...++.++++.+.+| +.|+||||+|||||+++|++.+.+. .|-|.+...++..
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~ 59 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVR 59 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccc
Confidence 345788899999988 7899999999999999999998877 6666665544443
No 87
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.73 E-value=3.6e-08 Score=84.36 Aligned_cols=60 Identities=20% Similarity=0.261 Sum_probs=46.0
Q ss_pred HHHHHHHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723 8 EIKKDLKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN 70 (236)
Q Consensus 8 ~i~~~v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN 70 (236)
.+...+...+....++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .+-|.+...
T Consensus 22 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~ 83 (236)
T cd03267 22 SLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGL 83 (236)
T ss_pred hHHHHHhcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCE
Confidence 34444444445566899999999888 8899999999999999999998776 565655543
No 88
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=6.2e-08 Score=91.23 Aligned_cols=44 Identities=14% Similarity=0.196 Sum_probs=33.6
Q ss_pred ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
.+.+|++|+.++.+++.++. |. ..+.|..++.+.....+.....
T Consensus 146 ~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~ 189 (491)
T PRK14964 146 HVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAK 189 (491)
T ss_pred CeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHH
Confidence 67888888999999998888 44 5588888887776666665544
No 89
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.72 E-value=5.7e-08 Score=84.79 Aligned_cols=65 Identities=14% Similarity=0.324 Sum_probs=51.0
Q ss_pred HHHHHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 10 KKDLKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 10 ~~~v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
.+++...+....++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .|-+.+....+..+++
T Consensus 27 ~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~ 93 (269)
T cd03294 27 KEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSR 93 (269)
T ss_pred hhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccCh
Confidence 345555666677899999999998 8899999999999999999998776 5666666655555544
No 90
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.71 E-value=3.6e-08 Score=87.77 Aligned_cols=67 Identities=21% Similarity=0.249 Sum_probs=49.7
Q ss_pred hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcccE
Q 048723 17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKR 88 (236)
Q Consensus 17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d~~ 88 (236)
|.+...++++++.+++| +.|+||+|+|||||+++|++.+.++ .|-+.+...++...+...++ ++.+.
T Consensus 17 ~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~--~ig~v 85 (306)
T PRK13537 17 YGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQ--RVGVV 85 (306)
T ss_pred ECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHh--cEEEE
Confidence 34456889999999998 8899999999999999999999877 66666655555444444333 44433
No 91
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=7.7e-08 Score=92.86 Aligned_cols=103 Identities=21% Similarity=0.243 Sum_probs=70.1
Q ss_pred CCcceEEECCCCCChHHHHHHHHhhcCCc------------------------c--------------------------
Q 048723 30 WKRGYLLYGPPGTGKSTMIAAMANFLNYD------------------------L-------------------------- 59 (236)
Q Consensus 30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~------------------------~-------------------------- 59 (236)
++..+||+||||+||||+++++|+.++.. +
T Consensus 36 l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~ 115 (702)
T PRK14960 36 LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPT 115 (702)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhh
Confidence 34569999999999999999999998641 1
Q ss_pred ------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcc
Q 048723 60 ------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDI 109 (236)
Q Consensus 60 ------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~ 109 (236)
.+.+.||++|+++..+++.+++ |. ..+.|..++.+.....+...+..
T Consensus 116 ~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~k 192 (702)
T PRK14960 116 QGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEK 192 (702)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHH
Confidence 2357888889999999998887 55 66888888887777666655543
Q ss_pred cchhhH-HHHHHHHHcCCCCHHHHHHH
Q 048723 110 ESHAFF-AEINSLLAETNMASADVAEN 135 (236)
Q Consensus 110 ~~~~~~-~~i~~ll~~~gls~a~i~~~ 135 (236)
...... ..+..++...+-+..++.+.
T Consensus 193 EgI~id~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 193 EQIAADQDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred cCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 322222 22333444444454444433
No 92
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.71 E-value=1.4e-07 Score=92.18 Aligned_cols=76 Identities=18% Similarity=0.270 Sum_probs=60.5
Q ss_pred CCcceEEECCCCCChHHHHHHHHhhcCCc------------------------c--------------------------
Q 048723 30 WKRGYLLYGPPGTGKSTMIAAMANFLNYD------------------------L-------------------------- 59 (236)
Q Consensus 30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~------------------------~-------------------------- 59 (236)
+...|||+||+|+||||++++|++.+++. +
T Consensus 37 L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~ 116 (830)
T PRK07003 37 LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPV 116 (830)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccc
Confidence 34558999999999999999999988642 1
Q ss_pred ------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 60 ------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 60 ------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
...+.||++||+++.|++.++. |. ..|.|..++.++....++..+.
T Consensus 117 ~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~ 192 (830)
T PRK07003 117 DARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILG 192 (830)
T ss_pred cCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHH
Confidence 2368999999999999999988 44 6688888888777766666554
No 93
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.71 E-value=2.5e-08 Score=78.05 Aligned_cols=27 Identities=44% Similarity=0.752 Sum_probs=25.1
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNYDL 59 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~~~ 59 (236)
+++|+||||||||++++.+|..++.++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~ 27 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPV 27 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcce
Confidence 389999999999999999999998777
No 94
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.71 E-value=4.7e-08 Score=82.51 Aligned_cols=53 Identities=25% Similarity=0.325 Sum_probs=42.0
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcc
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVD 73 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~ 73 (236)
....++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .|-|.+....+.
T Consensus 11 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~ 65 (220)
T cd03265 11 GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVV 65 (220)
T ss_pred CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecC
Confidence 3445788999999888 8899999999999999999988766 565655544443
No 95
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.70 E-value=5.4e-08 Score=83.42 Aligned_cols=56 Identities=21% Similarity=0.439 Sum_probs=44.4
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA 78 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a 78 (236)
..++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .|.|.+....+..+++.
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 71 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPV 71 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChH
Confidence 44788899999888 8899999999999999999998766 56666665555555543
No 96
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.69 E-value=1.6e-08 Score=86.70 Aligned_cols=53 Identities=25% Similarity=0.382 Sum_probs=45.6
Q ss_pred hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723 17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV 72 (236)
Q Consensus 17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~ 72 (236)
|....+++++++.+.+| ++|+||+|||||||++.||+...+. .|.|.+.+..+
T Consensus 13 f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v 67 (248)
T COG1116 13 FGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPV 67 (248)
T ss_pred eCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccc
Confidence 44467899999999999 8999999999999999999999988 77777766544
No 97
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.69 E-value=2.8e-08 Score=90.26 Aligned_cols=58 Identities=24% Similarity=0.341 Sum_probs=47.7
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA 78 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a 78 (236)
.+...+.++++.+..| +.|+||+|||||||+++||+...++ .|-|.+....+..+++.
T Consensus 15 ~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~ 74 (353)
T TIGR03265 15 GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQ 74 (353)
T ss_pred CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHH
Confidence 3344678888888888 8899999999999999999999877 77777777777667664
No 98
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.69 E-value=5.3e-08 Score=81.55 Aligned_cols=56 Identities=25% Similarity=0.417 Sum_probs=44.2
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA 78 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a 78 (236)
..++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .|-|.+....+...++.
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 71 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLK 71 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHH
Confidence 45788999999888 8899999999999999999998776 56666655544444443
No 99
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=5.4e-08 Score=87.49 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=45.5
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
..+.++++.+.+| +.|+||+|||||||+++|++.+.+. .|-|.+...++..++.
T Consensus 29 ~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADP 84 (327)
T ss_pred eEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCH
Confidence 4788999999998 8899999999999999999998766 6667777766666664
No 100
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.69 E-value=3.6e-08 Score=86.75 Aligned_cols=66 Identities=27% Similarity=0.274 Sum_probs=52.0
Q ss_pred HHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec---CccccchHHHh
Q 048723 13 LKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN---YVDKLDPALIR 81 (236)
Q Consensus 13 v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN---~~~~ld~al~r 81 (236)
+...+.....+.++++.++.| +.|.||+|+||||++++||+...++ .|.|++... +...++..-++
T Consensus 8 ~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 8 VKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRK 78 (345)
T ss_pred hhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcc
Confidence 344455556677899999999 8899999999999999999999999 888888776 55565554333
No 101
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.69 E-value=1.3e-07 Score=89.47 Aligned_cols=45 Identities=22% Similarity=0.331 Sum_probs=35.4
Q ss_pred ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcc
Q 048723 62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDI 109 (236)
Q Consensus 62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~ 109 (236)
..++|++|+.++.+++.++. |. ..+.|..++.++...+++..+..
T Consensus 158 ~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~ 202 (507)
T PRK06645 158 HIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQ 202 (507)
T ss_pred CEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHH
Confidence 67888888999999999888 55 56888888888877777766543
No 102
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.68 E-value=6.4e-08 Score=82.24 Aligned_cols=56 Identities=23% Similarity=0.363 Sum_probs=43.8
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
...++.++++.+.+| +.|+||||+|||||+++|++.+.+. .|-+.+........++
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~ 69 (232)
T cd03218 12 KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPM 69 (232)
T ss_pred CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCH
Confidence 345788999999888 8899999999999999999998776 5555555544444444
No 103
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.68 E-value=1.5e-07 Score=83.48 Aligned_cols=73 Identities=22% Similarity=0.252 Sum_probs=58.4
Q ss_pred CcceEEECCCCCChHHHHHHHHhhcCCcc---------------------------------------------------
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFLNYDL--------------------------------------------------- 59 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l~~~~--------------------------------------------------- 59 (236)
+..++|+||||+|||++++++++.++.++
T Consensus 43 ~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~ 122 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSDCRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLR 122 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCcccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHH
Confidence 34477799999999999999998765432
Q ss_pred ------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHh
Q 048723 60 ------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSY 106 (236)
Q Consensus 60 ------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~ 106 (236)
.+...+|+++|.++.+++++++ |+ ..+.++.|+.+.+..++..+
T Consensus 123 ~~le~~~~~~~~Ilt~n~~~~l~~~l~s--R~-~~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 123 SFMEAYSKNCSFIITANNKNGIIEPLRS--RC-RVIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred HHHHhcCCCceEEEEcCChhhchHHHHh--hc-eEEEeCCCCHHHHHHHHHHH
Confidence 2367889999999999999988 66 57889999988887666544
No 104
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.68 E-value=2.7e-08 Score=84.48 Aligned_cols=61 Identities=23% Similarity=0.460 Sum_probs=47.9
Q ss_pred hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHH
Q 048723 17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALI 80 (236)
Q Consensus 17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~ 80 (236)
+.+..++.++++.+++| +.|+||+|+|||||+++|++...+. .|-+.+....+..+++..+
T Consensus 17 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 79 (225)
T PRK10247 17 AGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPEIY 79 (225)
T ss_pred eCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEcCcCCHHHH
Confidence 34445889999999999 8899999999999999999988766 6666666666666665433
No 105
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.68 E-value=6.4e-08 Score=81.45 Aligned_cols=55 Identities=18% Similarity=0.322 Sum_probs=44.9
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
..++.++++.+.+| +.|+||||+|||||+++|++.+.+. .|.|.+....+..+++
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~ 73 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSE 73 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcch
Confidence 45789999999888 8899999999999999999998776 6667666655555553
No 106
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.68 E-value=7.7e-08 Score=80.97 Aligned_cols=51 Identities=27% Similarity=0.275 Sum_probs=41.3
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccc
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDK 74 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ 74 (236)
.++.++++.+.+| +.|+||+|||||||+++|++.+.+. .|-|.+....+..
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~ 71 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVK 71 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEccc
Confidence 5789999998888 8899999999999999999998766 5556555544443
No 107
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.67 E-value=7.6e-08 Score=81.11 Aligned_cols=51 Identities=18% Similarity=0.228 Sum_probs=41.9
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcc
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVD 73 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~ 73 (236)
..+++++++.+.+| +.|+||||+|||||+++|++.+.+. .|-|.+....+.
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~ 67 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIR 67 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecc
Confidence 45789999999988 8899999999999999999998776 566666554443
No 108
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.67 E-value=4e-08 Score=89.32 Aligned_cols=57 Identities=28% Similarity=0.410 Sum_probs=48.0
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA 78 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a 78 (236)
....++++++.+.+| +.|+||||||||||+++||+...+. .|-|.+....+..+++.
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~ 74 (356)
T PRK11650 16 KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPA 74 (356)
T ss_pred CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHH
Confidence 345688899999888 7899999999999999999998877 78888877777777764
No 109
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=8.8e-07 Score=81.56 Aligned_cols=80 Identities=20% Similarity=0.321 Sum_probs=61.9
Q ss_pred HhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCc-----------------------c--------------------
Q 048723 23 CAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYD-----------------------L-------------------- 59 (236)
Q Consensus 23 ~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~-----------------------~-------------------- 59 (236)
+...+...+.++||+||||+|||++++++|..+... +
T Consensus 28 ~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~ 107 (394)
T PRK07940 28 VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVT 107 (394)
T ss_pred ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHH
Confidence 344455577889999999999999999999876432 0
Q ss_pred -------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHH
Q 048723 60 -------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVL 102 (236)
Q Consensus 60 -------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i 102 (236)
...+++|++|++++.++|.+++ |. ..+.|+.|+.+.....
T Consensus 108 ~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~ 184 (394)
T PRK07940 108 IAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEV 184 (394)
T ss_pred HHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHH
Confidence 2367777777779999999998 54 6789999998887766
Q ss_pred HHH
Q 048723 103 AKS 105 (236)
Q Consensus 103 ~~~ 105 (236)
+..
T Consensus 185 L~~ 187 (394)
T PRK07940 185 LVR 187 (394)
T ss_pred HHH
Confidence 653
No 110
>PRK06620 hypothetical protein; Validated
Probab=98.67 E-value=1.7e-07 Score=79.41 Aligned_cols=74 Identities=19% Similarity=0.188 Sum_probs=54.4
Q ss_pred cceEEECCCCCChHHHHHHHHhhcCCcc---------------------------------------cCceEEEEeecCc
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLNYDL---------------------------------------VGEKGIVFTTNYV 72 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~~~~---------------------------------------~~~~~vi~ttN~~ 72 (236)
+.++|+||||||||+|++++++..+..+ .|..+++.++..+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~~~~~~~d~lliDdi~~~~~~~lf~l~N~~~e~g~~ilits~~~p 124 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNEEILEKYNAFIIEDIENWQEPALLHIFNIINEKQKYLLLTSSDKS 124 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhchhHHhcCCEEEEeccccchHHHHHHHHHHHHhcCCEEEEEcCCCc
Confidence 6699999999999999999998765433 3444555555444
Q ss_pred cc--cchHHHhcCCc--ccEEecccCCHHHHHHHHHHhhc
Q 048723 73 DK--LDPALIRRGRM--DKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 73 ~~--ld~al~r~gR~--d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
.. + |+++. |+ ..++.+..|+.+.+..+++....
T Consensus 125 ~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 125 RNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred cccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 44 5 67776 55 34788999999988888776643
No 111
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.67 E-value=7.8e-08 Score=80.60 Aligned_cols=54 Identities=26% Similarity=0.316 Sum_probs=42.7
Q ss_pred hhHHhhhCCCCCcc-eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723 20 KEYCAKIGKAWKRG-YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD 76 (236)
Q Consensus 20 ~~~~~~~~~~~~rg-~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld 76 (236)
..++.++++.+.+| +.|+||||+|||||+++|++.+.+. .|-|.+....+...+
T Consensus 13 ~~~l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~ 67 (211)
T cd03264 13 KRALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQP 67 (211)
T ss_pred EEEEcceeEEEcCCcEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccch
Confidence 34788888888888 7789999999999999999998776 666666665554444
No 112
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.66 E-value=7.2e-08 Score=81.09 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=43.2
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD 76 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld 76 (236)
.++.++++.+.+| +.|+||||+|||||+++|++.+.+. .|-|.+...++..++
T Consensus 17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~ 71 (216)
T TIGR00960 17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLR 71 (216)
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcC
Confidence 4788899999888 8899999999999999999998776 666666655554444
No 113
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=9.8e-08 Score=92.02 Aligned_cols=72 Identities=11% Similarity=0.051 Sum_probs=45.8
Q ss_pred CceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccchhhHH-HHHHHHHcCCCCHHHHHHH
Q 048723 61 GEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFA-EINSLLAETNMASADVAEN 135 (236)
Q Consensus 61 ~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~~~~~-~i~~ll~~~gls~a~i~~~ 135 (236)
+.++||++||+++.|.+.++.+ . ..+.|..++.+.....++..+......... .+..++...+=++.+..+.
T Consensus 153 ~~v~FILaTtep~kLlpTIrSR--C-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 153 EHVKFILATTDPQKIPVTVLSR--C-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred CCceEEEEeCChHhhhhHHHHH--H-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3789999999999999999984 3 568888888887777666555433222222 2233344444455544443
No 114
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.66 E-value=8.5e-08 Score=88.42 Aligned_cols=60 Identities=18% Similarity=0.277 Sum_probs=48.6
Q ss_pred hhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723 16 FSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA 78 (236)
Q Consensus 16 ~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a 78 (236)
.+.....+.+++|.+.+| ++|+||||||||||+++|++.+.+. .|.|.+...++..+++.
T Consensus 37 ~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~ 98 (400)
T PRK10070 37 KTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDA 98 (400)
T ss_pred hcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHH
Confidence 334445688899999988 8899999999999999999999877 67777777666666654
No 115
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.66 E-value=1.4e-07 Score=88.24 Aligned_cols=125 Identities=17% Similarity=0.229 Sum_probs=75.0
Q ss_pred cceEEECCCCCChHHHHHHHHhhcCC-----cc-----------------------------------------------
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLNY-----DL----------------------------------------------- 59 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~~-----~~----------------------------------------------- 59 (236)
++++|+||||||||+|+++|++.+.. .+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~ 228 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKER 228 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCCHH
Confidence 45999999999999999999998732 22
Q ss_pred --------------cCceEEEEeecCccc---cchHHHhcCCcc--cEEecccCCHHHHHHHHHHhhcccchhhHHHH-H
Q 048723 60 --------------VGEKGIVFTTNYVDK---LDPALIRRGRMD--KRIEMSYCCFEAFMVLAKSYLDIESHAFFAEI-N 119 (236)
Q Consensus 60 --------------~~~~~vi~ttN~~~~---ld~al~r~gR~d--~~i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i-~ 119 (236)
.+..+++.++..+.. ++++++. |+. ..+.+..|+.+.+..|++.........+..++ .
T Consensus 229 ~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~ 306 (450)
T PRK00149 229 TQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLE 306 (450)
T ss_pred HHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 123344444444444 6678877 664 67899999999999999987654333333333 3
Q ss_pred HHHHcCCCCHHHHHHHHcc---cccccChHHHHHHHHHHHHH
Q 048723 120 SLLAETNMASADVAENLMP---KSDEEDADSCLKNLIEALKV 158 (236)
Q Consensus 120 ~ll~~~gls~a~i~~~l~~---~~~~~~~~~~~~~~~~~L~~ 158 (236)
.++....=+..++...+.. .+......+++..+...|..
T Consensus 307 ~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~ 348 (450)
T PRK00149 307 FIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKD 348 (450)
T ss_pred HHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Confidence 3333444444544433332 12122233444444444443
No 116
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.65 E-value=4.3e-08 Score=89.71 Aligned_cols=57 Identities=26% Similarity=0.465 Sum_probs=48.0
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA 78 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a 78 (236)
...++.++++.+.+| ++|+||+|||||||+++||+...+. .|-|.+..+.+..+++.
T Consensus 26 ~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~ 84 (375)
T PRK09452 26 GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAE 84 (375)
T ss_pred CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHH
Confidence 334677888888888 8899999999999999999999887 78888888777777764
No 117
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.65 E-value=3e-08 Score=82.66 Aligned_cols=53 Identities=19% Similarity=0.374 Sum_probs=42.9
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcc
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVD 73 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~ 73 (236)
....++.++++.+.+| +.|+||||+|||||+++|++.+.+. .|-|.+....+.
T Consensus 9 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~ 63 (206)
T TIGR03608 9 GDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD---SGQVYLNGKETP 63 (206)
T ss_pred CCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEcc
Confidence 3445788999999888 8899999999999999999998776 566666655543
No 118
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.65 E-value=1.4e-07 Score=89.61 Aligned_cols=76 Identities=21% Similarity=0.304 Sum_probs=57.3
Q ss_pred CCcceEEECCCCCChHHHHHHHHhhcCCc------------------------c--------------------------
Q 048723 30 WKRGYLLYGPPGTGKSTMIAAMANFLNYD------------------------L-------------------------- 59 (236)
Q Consensus 30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~------------------------~-------------------------- 59 (236)
++..+||+||||+||||+++++|+.++.. +
T Consensus 37 l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~ 116 (509)
T PRK14958 37 LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPT 116 (509)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccc
Confidence 34569999999999999999999998642 1
Q ss_pred ------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 60 ------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 60 ------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
...+.||++|++++.+++.++. |. ..+.|..++.......+...+.
T Consensus 117 ~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~ 192 (509)
T PRK14958 117 KGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLK 192 (509)
T ss_pred cCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHH
Confidence 2367888888999999998887 43 5567777777665555444443
No 119
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.64 E-value=4.8e-08 Score=88.64 Aligned_cols=58 Identities=22% Similarity=0.306 Sum_probs=47.6
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA 78 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a 78 (236)
.....+.++++.+..| ++|+||+|||||||+++|++...++ .|.|.+....+..+++.
T Consensus 17 ~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~ 76 (351)
T PRK11432 17 GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQ 76 (351)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHH
Confidence 3344688889999888 8899999999999999999999888 77777777766666653
No 120
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.64 E-value=2.1e-07 Score=90.45 Aligned_cols=105 Identities=21% Similarity=0.232 Sum_probs=70.0
Q ss_pred CCCcceEEECCCCCChHHHHHHHHhhcCCc------------------------c-------------------------
Q 048723 29 AWKRGYLLYGPPGTGKSTMIAAMANFLNYD------------------------L------------------------- 59 (236)
Q Consensus 29 ~~~rg~lL~GPpGtGKTtlakaia~~l~~~------------------------~------------------------- 59 (236)
.++.++||+||+|+||||++++||+.+++. +
T Consensus 36 rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P 115 (709)
T PRK08691 36 RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAP 115 (709)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhh
Confidence 345669999999999999999999987542 0
Q ss_pred -------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 60 -------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 60 -------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
.+.+.||++|+++..+++.++. |. ..|.|..++.+.....+...+.
T Consensus 116 ~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~ 192 (709)
T PRK08691 116 TAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLD 192 (709)
T ss_pred hhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHH
Confidence 2367888899999999998886 55 5677778888777767666555
Q ss_pred ccchhhHH-HHHHHHHcCCCCHHHHHHHH
Q 048723 109 IESHAFFA-EINSLLAETNMASADVAENL 136 (236)
Q Consensus 109 ~~~~~~~~-~i~~ll~~~gls~a~i~~~l 136 (236)
........ .+..++...+-+..++.+.+
T Consensus 193 kEgi~id~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 193 SEKIAYEPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred HcCCCcCHHHHHHHHHHhCCCHHHHHHHH
Confidence 43322221 22333333344444444333
No 121
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.64 E-value=9.1e-08 Score=81.50 Aligned_cols=58 Identities=24% Similarity=0.411 Sum_probs=45.7
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA 78 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a 78 (236)
....++.++++.+.+| +.|+||+|||||||+++|++.+.+. .|-|.+....+...++.
T Consensus 11 ~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 70 (236)
T cd03219 11 GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPH 70 (236)
T ss_pred CCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHH
Confidence 3345788999999888 8899999999999999999998766 56666666555555543
No 122
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.63 E-value=5.6e-08 Score=88.55 Aligned_cols=56 Identities=21% Similarity=0.370 Sum_probs=46.7
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCc--eEEEEeecCccccch
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGE--KGIVFTTNYVDKLDP 77 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~--~~vi~ttN~~~~ld~ 77 (236)
....+.++++.+.+| +.|+||||||||||+++|++...++ . |-|.+....+..+++
T Consensus 17 ~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~ 76 (362)
T TIGR03258 17 ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPP 76 (362)
T ss_pred CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCH
Confidence 344688889999888 8899999999999999999998877 6 777777776666665
No 123
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.63 E-value=1.4e-07 Score=79.16 Aligned_cols=55 Identities=20% Similarity=0.352 Sum_probs=44.7
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
..++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .|-+.+...++..+++
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~ 71 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRG 71 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCH
Confidence 45789999999988 8899999999999999999998766 6666666655555543
No 124
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.63 E-value=7.2e-08 Score=85.56 Aligned_cols=54 Identities=20% Similarity=0.305 Sum_probs=43.5
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccc
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDK 74 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ 74 (236)
.+...+.++++.+.+| +.|+||||+|||||+++|++.+.+. .|-|.+.+.++..
T Consensus 13 ~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~ 68 (301)
T TIGR03522 13 GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQ 68 (301)
T ss_pred CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccc
Confidence 3445788899999998 8899999999999999999998877 6666665555444
No 125
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.63 E-value=7.4e-08 Score=82.25 Aligned_cols=57 Identities=21% Similarity=0.327 Sum_probs=44.7
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA 78 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a 78 (236)
+..++.++++.+.+| +.|+||+|+|||||+++|++...+. .|.|.+....+...++.
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~ 71 (236)
T TIGR03864 13 ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRA 71 (236)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChh
Confidence 445788899998888 8899999999999999999998766 56666655555444443
No 126
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.63 E-value=1.1e-07 Score=78.54 Aligned_cols=51 Identities=25% Similarity=0.405 Sum_probs=41.8
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV 72 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~ 72 (236)
...++.++++.+.+| +.|+||+|+|||||+++|++...+. .|-|.+...++
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~ 56 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPL 56 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceeEEECCEEc
Confidence 445788999999888 8899999999999999999998776 56666655444
No 127
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.63 E-value=2.1e-07 Score=89.44 Aligned_cols=45 Identities=13% Similarity=0.129 Sum_probs=34.7
Q ss_pred CceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 61 GEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 61 ~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
..++||++|+.++.+.+.++. | ...+.|..++.+.....+..++.
T Consensus 147 ~~~~fIL~tte~~kll~TI~S--R-c~~~~F~~l~~~~i~~~L~~i~~ 191 (584)
T PRK14952 147 EHLIFIFATTEPEKVLPTIRS--R-THHYPFRLLPPRTMRALIARICE 191 (584)
T ss_pred CCeEEEEEeCChHhhHHHHHH--h-ceEEEeeCCCHHHHHHHHHHHHH
Confidence 378888888999999999888 4 36788888888777766665544
No 128
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.63 E-value=7.3e-08 Score=87.08 Aligned_cols=57 Identities=23% Similarity=0.245 Sum_probs=45.9
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
.....+++++|.+.+| +.|+||||+|||||+++|++.+.+. .|-+.+.+.++...+.
T Consensus 52 ~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~ 110 (340)
T PRK13536 52 GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARAR 110 (340)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchH
Confidence 3445788999999988 8899999999999999999999877 6666666665554443
No 129
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.62 E-value=9e-08 Score=82.09 Aligned_cols=60 Identities=30% Similarity=0.533 Sum_probs=46.8
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
...++.++++.+.+| +.|+||||+|||||+++|++.+.+. .|.|.+...++..+++..++
T Consensus 15 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~ 76 (241)
T PRK14250 15 GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLR 76 (241)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhh
Confidence 345788999999888 8899999999999999999998776 66666666555555544333
No 130
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.62 E-value=1.2e-07 Score=85.85 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=47.7
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA 78 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a 78 (236)
.+++++++.+.+| +.|+||||+|||||+++|++...++ .|-|.+.+.++..+++.
T Consensus 19 ~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~ 75 (343)
T TIGR02314 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNS 75 (343)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHH
Confidence 4789999999988 8899999999999999999999887 77788877777777654
No 131
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.62 E-value=9.2e-08 Score=80.27 Aligned_cols=56 Identities=21% Similarity=0.318 Sum_probs=44.3
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD 76 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld 76 (236)
....++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .|-|.+....+...+
T Consensus 11 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~ 68 (213)
T cd03259 11 GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVP 68 (213)
T ss_pred CCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCc
Confidence 3445789999999988 8899999999999999999998776 666666555444433
No 132
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.62 E-value=2.3e-07 Score=88.99 Aligned_cols=76 Identities=24% Similarity=0.360 Sum_probs=59.0
Q ss_pred CCcceEEECCCCCChHHHHHHHHhhcCCc------------------------c--------------------------
Q 048723 30 WKRGYLLYGPPGTGKSTMIAAMANFLNYD------------------------L-------------------------- 59 (236)
Q Consensus 30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~------------------------~-------------------------- 59 (236)
+++.|||+||+|||||++++.+|+.++.. +
T Consensus 37 ~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~ 116 (559)
T PRK05563 37 ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPS 116 (559)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcc
Confidence 45669999999999999999999987521 1
Q ss_pred ------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 60 ------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 60 ------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
...+++|++|+.++.+++.+++ |. ..+.|..++..+....+...+.
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~ 192 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILD 192 (559)
T ss_pred cCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHH
Confidence 2367888888889999999887 54 4678888888777766665543
No 133
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.61 E-value=1.1e-07 Score=84.48 Aligned_cols=52 Identities=27% Similarity=0.382 Sum_probs=42.0
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV 72 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~ 72 (236)
.+..+++++++.+.+| +.|+||||+|||||+++|++.+.+. .|-+.+...++
T Consensus 15 ~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~ 68 (303)
T TIGR01288 15 GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPV 68 (303)
T ss_pred CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEC
Confidence 3445789999999998 8899999999999999999998776 56565554443
No 134
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.61 E-value=6.3e-08 Score=88.42 Aligned_cols=56 Identities=20% Similarity=0.387 Sum_probs=45.6
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
+..++.++++.+.+| +.|+||+|||||||+++|++.+.++ .|.|.+....+..+++
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~ 72 (369)
T PRK11000 15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPP 72 (369)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCH
Confidence 345788899999888 8899999999999999999998877 6777776665555555
No 135
>PHA02244 ATPase-like protein
Probab=98.61 E-value=2.3e-07 Score=84.30 Aligned_cols=63 Identities=25% Similarity=0.379 Sum_probs=52.4
Q ss_pred CcceEEECCCCCChHHHHHHHHhhcCCcc---------------------------------------------------
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFLNYDL--------------------------------------------------- 59 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l~~~~--------------------------------------------------- 59 (236)
+..++|+||||||||+++++|+..++.+|
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId~a~p~vq~ 198 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEIDASIPEALI 198 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhhcCCEEEEeCcCcCCHHHHH
Confidence 34599999999999999999999888665
Q ss_pred --------------------cCceEEEEeecCc-----------cccchHHHhcCCcccEEecccCCH
Q 048723 60 --------------------VGEKGIVFTTNYV-----------DKLDPALIRRGRMDKRIEMSYCCF 96 (236)
Q Consensus 60 --------------------~~~~~vi~ttN~~-----------~~ld~al~r~gR~d~~i~~~~p~~ 96 (236)
..+..+|+|+|.. ..++++++. || ..|+|.||..
T Consensus 199 ~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~~dyp~~ 263 (383)
T PHA02244 199 IINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIEFDYDEK 263 (383)
T ss_pred HHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEeeCCCCcH
Confidence 1256888999973 568999999 89 6899999984
No 136
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.61 E-value=2e-07 Score=85.99 Aligned_cols=102 Identities=17% Similarity=0.252 Sum_probs=65.7
Q ss_pred cceEEECCCCCChHHHHHHHHhhcC-----Ccc-----------------------------------------------
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLN-----YDL----------------------------------------------- 59 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~-----~~~----------------------------------------------- 59 (236)
.+++|+||||+|||+|+++|++.+. ..+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~ 216 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKER 216 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcCCHH
Confidence 3589999999999999999998762 222
Q ss_pred -------------cCceEEEEeec-Cccc---cchHHHhcCCcc--cEEecccCCHHHHHHHHHHhhcccchhhHHHH-H
Q 048723 60 -------------VGEKGIVFTTN-YVDK---LDPALIRRGRMD--KRIEMSYCCFEAFMVLAKSYLDIESHAFFAEI-N 119 (236)
Q Consensus 60 -------------~~~~~vi~ttN-~~~~---ld~al~r~gR~d--~~i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i-~ 119 (236)
..+..+++++| .+.. +++.++. |+. ..+.+..|+.+.+..|++.........+..++ .
T Consensus 217 ~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~ 294 (405)
T TIGR00362 217 TQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLE 294 (405)
T ss_pred HHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 11233445554 4443 5577776 664 57899999999999999987654433333333 3
Q ss_pred HHHHcCCCCHHHHHHH
Q 048723 120 SLLAETNMASADVAEN 135 (236)
Q Consensus 120 ~ll~~~gls~a~i~~~ 135 (236)
.++....-+..++...
T Consensus 295 ~ia~~~~~~~r~l~~~ 310 (405)
T TIGR00362 295 FIAKNIRSNVRELEGA 310 (405)
T ss_pred HHHHhcCCCHHHHHHH
Confidence 3334444444544433
No 137
>PLN03025 replication factor C subunit; Provisional
Probab=98.60 E-value=2.7e-07 Score=82.54 Aligned_cols=73 Identities=23% Similarity=0.300 Sum_probs=55.1
Q ss_pred ceEEECCCCCChHHHHHHHHhhcC-Cc----c------------------------------------------------
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLN-YD----L------------------------------------------------ 59 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~-~~----~------------------------------------------------ 59 (236)
.++|+|||||||||+++++|+.+. .. +
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~a 115 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGA 115 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHH
Confidence 499999999999999999999862 11 1
Q ss_pred -----------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 60 -----------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 60 -----------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
.....+++++|....+.++++. |. ..+.|..|+.++....++....
T Consensus 116 q~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~ 172 (319)
T PLN03025 116 QQALRRTMEIYSNTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVE 172 (319)
T ss_pred HHHHHHHHhcccCCceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHH
Confidence 1245677888888888888887 43 5688888888777766665443
No 138
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=3.5e-07 Score=90.86 Aligned_cols=76 Identities=18% Similarity=0.259 Sum_probs=60.2
Q ss_pred CCcceEEECCCCCChHHHHHHHHhhcCCc-------c-------------------------------------------
Q 048723 30 WKRGYLLYGPPGTGKSTMIAAMANFLNYD-------L------------------------------------------- 59 (236)
Q Consensus 30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~-------~------------------------------------------- 59 (236)
++..|||+|||||||||++++||+.++.. +
T Consensus 37 l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~ 116 (944)
T PRK14949 37 LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPS 116 (944)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhh
Confidence 45558999999999999999999998653 0
Q ss_pred ------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 60 ------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 60 ------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
.+.+.||++|+.+..|.+.++. |. ..+.|..++.+.....++..+.
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~ 192 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILT 192 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHH
Confidence 2357788889999999999888 44 6688888888887777776554
No 139
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.59 E-value=1.7e-07 Score=81.74 Aligned_cols=50 Identities=18% Similarity=0.345 Sum_probs=41.2
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcc
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVD 73 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~ 73 (236)
.++.++++.+.+| +.|+||||+|||||+++|++.+.+. .|-|.+....+.
T Consensus 27 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~ 78 (267)
T PRK15112 27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLH 78 (267)
T ss_pred ceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECC
Confidence 4789999999888 8899999999999999999998776 565655554443
No 140
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.59 E-value=8.8e-08 Score=80.34 Aligned_cols=56 Identities=21% Similarity=0.276 Sum_probs=44.2
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD 76 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld 76 (236)
....++.++++.+.+| ++|+||+|+|||||+++|++.+.+. .+-+.+..+.+...+
T Consensus 11 ~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~ 68 (213)
T cd03301 11 GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLP 68 (213)
T ss_pred CCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCC
Confidence 3445788999999888 8899999999999999999998766 566666655544443
No 141
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.59 E-value=3.8e-08 Score=79.64 Aligned_cols=55 Identities=24% Similarity=0.349 Sum_probs=45.2
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
..++.++++.+.+| +.|+||+|+|||||+++|++...+. .+-+.+...++...++
T Consensus 13 ~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~ 69 (163)
T cd03216 13 VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD---SGEILVDGKEVSFASP 69 (163)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCcCCH
Confidence 34788889988888 8899999999999999999998776 6667776666666654
No 142
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.59 E-value=7.3e-08 Score=81.83 Aligned_cols=57 Identities=19% Similarity=0.331 Sum_probs=45.4
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA 78 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a 78 (236)
...++.++++.+.+| ++|+||||||||||+++|++.+.+. .|-|.+.......+++.
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 70 (230)
T TIGR03410 12 QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPH 70 (230)
T ss_pred CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHH
Confidence 345788999999988 8999999999999999999998876 56666665555555543
No 143
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.58 E-value=3.2e-07 Score=82.56 Aligned_cols=72 Identities=15% Similarity=0.175 Sum_probs=46.2
Q ss_pred ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccchhhH-HHHHHHHHcCCCCHHHHHHHH
Q 048723 62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFF-AEINSLLAETNMASADVAENL 136 (236)
Q Consensus 62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~~~~-~~i~~ll~~~gls~a~i~~~l 136 (236)
..++|+++++++.+.+.+++ |. ..+.|..|+..+...++..++...+.... ..+..++...+-++..+.+.+
T Consensus 147 ~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 147 HVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred ceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHH
Confidence 56777888888888888887 55 57888888888888777766543332222 223334444455555554443
No 144
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=2.2e-07 Score=83.54 Aligned_cols=61 Identities=21% Similarity=0.318 Sum_probs=47.2
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcc-cCceEEEEeecCccccchHHHh
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDL-VGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~-~~~~~vi~ttN~~~~ld~al~r 81 (236)
.++++++|.+.+| +.|+||||||||||+++|++.+..+- ...|.|.+.+.++..++...++
T Consensus 21 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~ 84 (326)
T PRK11022 21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERR 84 (326)
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHH
Confidence 4789999999999 88999999999999999999986420 0156666777777777665443
No 145
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.58 E-value=1.4e-07 Score=84.96 Aligned_cols=55 Identities=15% Similarity=0.207 Sum_probs=46.9
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA 78 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a 78 (236)
.++.++++.+.+| +.|+||+|||||||+++|++.+.+. .|-|.+.+.++..++..
T Consensus 35 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~ 91 (331)
T PRK15079 35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDD 91 (331)
T ss_pred EEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHH
Confidence 4788999999999 8899999999999999999998776 67777777777777654
No 146
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.58 E-value=1.4e-07 Score=79.00 Aligned_cols=50 Identities=24% Similarity=0.373 Sum_probs=40.6
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecC
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNY 71 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~ 71 (236)
...++.++++.+.+| +.|+||+|||||||+++|++.+.+. .+-|.+....
T Consensus 12 ~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~ 63 (210)
T cd03269 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKP 63 (210)
T ss_pred CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCc
Confidence 345788889998888 7899999999999999999998766 5666665443
No 147
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.58 E-value=9.8e-08 Score=81.37 Aligned_cols=56 Identities=23% Similarity=0.464 Sum_probs=44.9
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
...++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .|-|.+....+...++
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~ 69 (235)
T cd03261 12 GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSE 69 (235)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccCh
Confidence 345788999999888 8899999999999999999998776 6666666655555543
No 148
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.58 E-value=4.4e-08 Score=83.78 Aligned_cols=55 Identities=25% Similarity=0.455 Sum_probs=44.1
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD 76 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld 76 (236)
...++.++++.+.+| ++|+||+|||||||+++|++.+.+. .|-|.+...++..++
T Consensus 14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~ 70 (243)
T TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLR 70 (243)
T ss_pred CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCC
Confidence 455899999999999 8899999999999999999998766 566666555544444
No 149
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.58 E-value=2.6e-07 Score=79.28 Aligned_cols=75 Identities=16% Similarity=0.116 Sum_probs=52.9
Q ss_pred cceEEECCCCCChHHHHHHHHhhcCCc-----c-----------------------------------------------
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLNYD-----L----------------------------------------------- 59 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~~~-----~----------------------------------------------- 59 (236)
+.++|+||||||||+|++++++.+... +
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~dlliiDdi~~~~~~~~~~~~lf~l~n~ 125 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPEVLEGMEQLSLVCIDNIECIAGDELWEMAIFDLYNR 125 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHHHHHHhhhCCEEEEeChhhhcCCHHHHHHHHHHHHH
Confidence 459999999999999999999865311 1
Q ss_pred ---cCceEEEEee-cCccc---cchHHHhcCCcccEEecccCCHHHHHHHHHHh
Q 048723 60 ---VGEKGIVFTT-NYVDK---LDPALIRRGRMDKRIEMSYCCFEAFMVLAKSY 106 (236)
Q Consensus 60 ---~~~~~vi~tt-N~~~~---ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~ 106 (236)
.+...+++|+ +.+.. +.|+++.+.....++.+..|+.+.+..+++..
T Consensus 126 ~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~ 179 (235)
T PRK08084 126 ILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLR 179 (235)
T ss_pred HHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHH
Confidence 2233445544 45444 56888883333478899999998888887654
No 150
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.58 E-value=1.8e-07 Score=78.45 Aligned_cols=55 Identities=24% Similarity=0.238 Sum_probs=44.1
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
..++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .+.|.+...++..+++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~ 70 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRG 70 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCH
Confidence 35788899998888 8899999999999999999998776 6666666555555543
No 151
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.58 E-value=2.8e-07 Score=79.40 Aligned_cols=50 Identities=24% Similarity=0.383 Sum_probs=41.1
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecC
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNY 71 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~ 71 (236)
...++.++++.+.+| ++|+||||||||||+++|++...+. .|-|.+...+
T Consensus 15 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~ 66 (253)
T TIGR02323 15 GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRS 66 (253)
T ss_pred CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEEeccc
Confidence 345688999999888 8999999999999999999998776 5666665544
No 152
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.57 E-value=1.6e-07 Score=79.60 Aligned_cols=57 Identities=21% Similarity=0.357 Sum_probs=44.9
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHH
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALI 80 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~ 80 (236)
.++.++++.+++| +.|+||+|+|||||+++|++.+.+. .|.|.+....+..+++.-+
T Consensus 17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 75 (229)
T cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDISRKSL 75 (229)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEeHHHcCHHHH
Confidence 4788999999998 8899999999999999999998776 5666665555544554333
No 153
>PRK10908 cell division protein FtsE; Provisional
Probab=98.57 E-value=2e-07 Score=78.77 Aligned_cols=55 Identities=20% Similarity=0.316 Sum_probs=45.2
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
..++.++++.+.+| +.|+||||+|||||+++|++.+.+. .+-|.+..+.+..+++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~ 71 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKN 71 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCCh
Confidence 45788999999888 8899999999999999999998776 6777776666655543
No 154
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.57 E-value=1.8e-07 Score=78.85 Aligned_cols=54 Identities=20% Similarity=0.368 Sum_probs=43.9
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
.++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .+-+.+...++..+++
T Consensus 19 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~ 74 (221)
T TIGR02211 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSS 74 (221)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCH
Confidence 4788899998888 8899999999999999999998776 6666666555555554
No 155
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.57 E-value=2e-07 Score=85.54 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=44.0
Q ss_pred HHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEee
Q 048723 13 LKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTT 69 (236)
Q Consensus 13 v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~tt 69 (236)
+...+.....+.+++|.+.+| +.|+||||+|||||+++|++.+.+. .|-|.+..
T Consensus 30 ~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG 85 (382)
T TIGR03415 30 ILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKD 85 (382)
T ss_pred HHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECC
Confidence 334445566788899999999 8899999999999999999998877 66666655
No 156
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.57 E-value=1.1e-07 Score=80.89 Aligned_cols=54 Identities=17% Similarity=0.279 Sum_probs=44.1
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
.++.++++.+.+| ++|+||+|+|||||+++|++.+.+. .+-+.+...++...++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~ 74 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSG 74 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCH
Confidence 5789999999888 8899999999999999999998876 6666666655555443
No 157
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.56 E-value=2.7e-08 Score=84.29 Aligned_cols=67 Identities=19% Similarity=0.271 Sum_probs=60.0
Q ss_pred HHHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 12 DLKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 12 ~v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
++..+|...++++++++..++| ++|+||||+||||++++|++..... .+.|++.+.++..+||.-+-
T Consensus 8 ~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~ 76 (237)
T COG0410 8 NLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERA 76 (237)
T ss_pred eEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHH
Confidence 4566777888999999999999 8999999999999999999999988 78999999999999987664
No 158
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.56 E-value=1.8e-07 Score=79.65 Aligned_cols=54 Identities=19% Similarity=0.360 Sum_probs=44.7
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
.++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .|-|.+...++..+++
T Consensus 23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~ 78 (233)
T PRK11629 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSS 78 (233)
T ss_pred eeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCH
Confidence 4788999999988 8899999999999999999998766 6767766656655654
No 159
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.56 E-value=4.9e-07 Score=75.55 Aligned_cols=69 Identities=20% Similarity=0.210 Sum_probs=54.0
Q ss_pred HHHhhhChh-HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcc
Q 048723 13 LKKFSEGKE-YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMD 86 (236)
Q Consensus 13 v~~~~~~~~-~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d 86 (236)
+...|.++. .+++++|...+| +-|.||||+||||+++.||..+-++ .+.+.+.+-+...-|...+| ++.
T Consensus 7 l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr--~IG 78 (245)
T COG4555 7 LTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRR--KIG 78 (245)
T ss_pred hhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhh--hcc
Confidence 334445554 789999999999 7799999999999999999999998 78888777666665555555 554
No 160
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.56 E-value=2.5e-07 Score=80.04 Aligned_cols=50 Identities=20% Similarity=0.352 Sum_probs=41.7
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecC
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNY 71 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~ 71 (236)
...++.++++.+.+| ++|.||||+|||||+++|++.+.+. .|-|.+...+
T Consensus 18 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~ 69 (258)
T PRK11701 18 PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRD 69 (258)
T ss_pred CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCcc
Confidence 345788999999888 8999999999999999999998776 5666665554
No 161
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.56 E-value=2.2e-07 Score=81.12 Aligned_cols=59 Identities=20% Similarity=0.258 Sum_probs=46.5
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
..++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .|-|.+...++...++.-++
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~ 82 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIR 82 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHh
Confidence 35789999999888 8899999999999999999998776 66666666666555543333
No 162
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.56 E-value=1.1e-07 Score=80.21 Aligned_cols=49 Identities=22% Similarity=0.312 Sum_probs=40.2
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecC
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNY 71 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~ 71 (236)
..++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .|-+.+....
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~ 67 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEP 67 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEE
Confidence 35788999999888 8899999999999999999998766 5656554433
No 163
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.55 E-value=2.1e-07 Score=84.14 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=46.6
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA 78 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a 78 (236)
..++.++++.+.+| +.|+||||+|||||+++|++.+.+. .|.|.+...++..+++.
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~ 75 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEK 75 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHH
Confidence 35788999999999 8899999999999999999998877 67777776666666543
No 164
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.55 E-value=1e-07 Score=87.24 Aligned_cols=56 Identities=23% Similarity=0.432 Sum_probs=46.1
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
....+.++++.+.+| ++|+||+|||||||+++||+...++ .|-|.+....+..+++
T Consensus 31 ~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~ 88 (377)
T PRK11607 31 GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPP 88 (377)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCH
Confidence 334677888888888 8899999999999999999999877 7777777766666665
No 165
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.55 E-value=2e-07 Score=91.62 Aligned_cols=74 Identities=28% Similarity=0.406 Sum_probs=56.1
Q ss_pred cceEEECCCCCChHHHHHHHHhhcCCcc----------------------------------------------------
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLNYDL---------------------------------------------------- 59 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~~~~---------------------------------------------------- 59 (236)
..++|+|||||||||++++|++..+..+
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~ 132 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPW 132 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhhhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHH
Confidence 3599999999999999999999886654
Q ss_pred --cCceEEEEee--cCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 60 --VGEKGIVFTT--NYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 60 --~~~~~vi~tt--N~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
.+.+++|++| |....+++++++ |. ..+.|+.++.+.+..+++.++.
T Consensus 133 lE~g~IiLI~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 133 VENGTITLIGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred hcCceEEEEEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHH
Confidence 2244455544 444568888888 43 4588999999888888887664
No 166
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.55 E-value=1.7e-07 Score=79.07 Aligned_cols=57 Identities=21% Similarity=0.324 Sum_probs=45.3
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA 78 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a 78 (236)
...++.++++.+.+| ++|+||+|+|||||+++|++.+.+. .|-|.+....+...++.
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 70 (222)
T cd03224 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPH 70 (222)
T ss_pred CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHH
Confidence 345788999999888 8899999999999999999998776 56666665555555553
No 167
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.55 E-value=1.8e-07 Score=76.46 Aligned_cols=116 Identities=20% Similarity=0.204 Sum_probs=75.0
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH---HHhcCCcccEE--ecc
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA---LIRRGRMDKRI--EMS 92 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a---l~r~gR~d~~i--~~~ 92 (236)
-.+++++++.+.+| +.++||+|+|||||+..+|+.-.++ .+-|...+.....+|.. .+|..++..+| +.-
T Consensus 23 l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~L 99 (228)
T COG4181 23 LSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHL 99 (228)
T ss_pred eeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHHHHHhhccceeEEEEeeec
Confidence 35788888888888 9999999999999999999998888 78888888889999863 34444454444 223
Q ss_pred cCCHHHHHHHHHHh-hcc-cchhhHHHHHHHHHcCCC-----------CHHHHHHHHcc
Q 048723 93 YCCFEAFMVLAKSY-LDI-ESHAFFAEINSLLAETNM-----------ASADVAENLMP 138 (236)
Q Consensus 93 ~p~~~~~~~i~~~~-l~~-~~~~~~~~i~~ll~~~gl-----------s~a~i~~~l~~ 138 (236)
.|+........-.. +.. .....+.....+++..|+ |+++-++..++
T Consensus 100 ip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiA 158 (228)
T COG4181 100 IPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALA 158 (228)
T ss_pred cccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHH
Confidence 45554443322221 111 122234445556665554 55555555444
No 168
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.55 E-value=1.1e-07 Score=79.56 Aligned_cols=54 Identities=15% Similarity=0.343 Sum_probs=43.3
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcccc
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKL 75 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~l 75 (236)
...++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .|-|.+....+...
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~v~~~g~~~~~~ 68 (204)
T PRK13538 13 ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD---AGEVLWQGEPIRRQ 68 (204)
T ss_pred CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccc
Confidence 345788899999988 8899999999999999999998877 56666665544443
No 169
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.55 E-value=2e-07 Score=82.17 Aligned_cols=52 Identities=21% Similarity=0.290 Sum_probs=43.8
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcccc
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKL 75 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~l 75 (236)
.+++++++.+.+| +.|+||||+|||||+++|++.+.+. .|-|.+...++...
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~ 74 (287)
T PRK13637 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDK 74 (287)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCc
Confidence 4788999999998 8899999999999999999998877 67777766655543
No 170
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=5.4e-07 Score=87.11 Aligned_cols=71 Identities=13% Similarity=0.049 Sum_probs=44.0
Q ss_pred ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccchhhHH-HHHHHHHcCCCCHHHHHHH
Q 048723 62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFA-EINSLLAETNMASADVAEN 135 (236)
Q Consensus 62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~~~~~-~i~~ll~~~gls~a~i~~~ 135 (236)
...||++|++++.+.+.++. |. ..+.|..++.+.....++..+...+..... .+..++...+-+..++.+.
T Consensus 154 ~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 154 YLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred CeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 57888888899999988887 44 668888888877776666654433322222 2333334444445544443
No 171
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.55 E-value=2.6e-07 Score=78.30 Aligned_cols=54 Identities=24% Similarity=0.366 Sum_probs=44.4
Q ss_pred HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723 22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA 78 (236)
Q Consensus 22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a 78 (236)
++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .|.|.+....+..+++.
T Consensus 25 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~ 80 (228)
T PRK10584 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEE 80 (228)
T ss_pred EEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHH
Confidence 788999999888 8899999999999999999998776 66666666555555543
No 172
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=5.2e-07 Score=87.54 Aligned_cols=75 Identities=23% Similarity=0.302 Sum_probs=60.4
Q ss_pred CCcceEEECCCCCChHHHHHHHHhhcCCc------------------------c--------------------------
Q 048723 30 WKRGYLLYGPPGTGKSTMIAAMANFLNYD------------------------L-------------------------- 59 (236)
Q Consensus 30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~------------------------~-------------------------- 59 (236)
++..|||+||+|+||||+++++|+.++.. +
T Consensus 37 l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~ 116 (647)
T PRK07994 37 LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPA 116 (647)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhh
Confidence 34558999999999999999999998651 1
Q ss_pred ------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723 60 ------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL 107 (236)
Q Consensus 60 ------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l 107 (236)
.+.+.||++|++++.|.+.++. |. ..+.|..++.+.....+...+
T Consensus 117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il 191 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHIL 191 (647)
T ss_pred cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHH
Confidence 2367888889999999999888 53 778999998888777776655
No 173
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=5.4e-07 Score=85.98 Aligned_cols=44 Identities=11% Similarity=0.087 Sum_probs=32.8
Q ss_pred CceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723 61 GEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL 107 (236)
Q Consensus 61 ~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l 107 (236)
+.+.+|++|+++..+.+.++. |. ..+.|..++.+.....+...+
T Consensus 148 ~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il 191 (546)
T PRK14957 148 EYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIIL 191 (546)
T ss_pred CCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHH
Confidence 367788888889999988887 44 668898888877766655543
No 174
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.54 E-value=9.8e-08 Score=80.27 Aligned_cols=62 Identities=21% Similarity=0.387 Sum_probs=54.1
Q ss_pred hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
+..+.++.+++++.+.| +.++||||+|||||+++|.+++.+. .+.+-+....+++.++.-+.
T Consensus 11 ~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA 74 (259)
T COG4559 11 LAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELA 74 (259)
T ss_pred eecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHH
Confidence 45677899999999999 7799999999999999999999988 78888888888888886554
No 175
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.54 E-value=1e-06 Score=79.13 Aligned_cols=78 Identities=27% Similarity=0.238 Sum_probs=60.0
Q ss_pred CCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------------------------------
Q 048723 28 KAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------------------------------ 59 (236)
Q Consensus 28 ~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------------------------------ 59 (236)
+...+.++|.||||||||++++++|..++.+|
T Consensus 40 ~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~D 119 (329)
T COG0714 40 LLAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLD 119 (329)
T ss_pred HHcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEe
Confidence 44455699999999999999999999999888
Q ss_pred ---------------------------c-----CceEEEEeec-----CccccchHHHhcCCcccEEecccC-CHHHHHH
Q 048723 60 ---------------------------V-----GEKGIVFTTN-----YVDKLDPALIRRGRMDKRIEMSYC-CFEAFMV 101 (236)
Q Consensus 60 ---------------------------~-----~~~~vi~ttN-----~~~~ld~al~r~gR~d~~i~~~~p-~~~~~~~ 101 (236)
. ...++++|+| ....++.++++ ||-..++++|| .......
T Consensus 120 EInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~ 197 (329)
T COG0714 120 EINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERI 197 (329)
T ss_pred ccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHH
Confidence 1 2346677778 55678999999 89888999999 4444444
Q ss_pred HHHHhh
Q 048723 102 LAKSYL 107 (236)
Q Consensus 102 i~~~~l 107 (236)
+...+.
T Consensus 198 i~~~~~ 203 (329)
T COG0714 198 ILARVG 203 (329)
T ss_pred HHHhCc
Confidence 444443
No 176
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.53 E-value=3.8e-07 Score=76.86 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=22.7
Q ss_pred CcceEEECCCCCChHHHHHHHHhhcC
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l~ 56 (236)
.+.++|+||||||||++++++++.+.
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAE 63 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45599999999999999999998763
No 177
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.53 E-value=2.6e-07 Score=91.30 Aligned_cols=74 Identities=28% Similarity=0.420 Sum_probs=59.8
Q ss_pred CcceEEECCCCCChHHHHHHHHhhc----------CCcc-----------------------------------------
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFL----------NYDL----------------------------------------- 59 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l----------~~~~----------------------------------------- 59 (236)
+.+++|+||||||||+++++||..+ +..+
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDE 282 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDE 282 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEec
Confidence 4569999999999999999999876 2222
Q ss_pred --------------------------cCceEEEEeecCcc-----ccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723 60 --------------------------VGEKGIVFTTNYVD-----KLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL 107 (236)
Q Consensus 60 --------------------------~~~~~vi~ttN~~~-----~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l 107 (236)
.|...+|++||..+ ..|+++.| ||. .|.+..|+.+++..|++.+.
T Consensus 283 ih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 283 IHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHH
Confidence 34678889988633 57999999 995 79999999999999988543
No 178
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.53 E-value=4.5e-07 Score=87.07 Aligned_cols=76 Identities=22% Similarity=0.333 Sum_probs=58.9
Q ss_pred CCCcceEEECCCCCChHHHHHHHHhhcCCc------------------------c-------------------------
Q 048723 29 AWKRGYLLYGPPGTGKSTMIAAMANFLNYD------------------------L------------------------- 59 (236)
Q Consensus 29 ~~~rg~lL~GPpGtGKTtlakaia~~l~~~------------------------~------------------------- 59 (236)
..++++||+||||+||||+|+++|+.+... +
T Consensus 36 rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P 115 (605)
T PRK05896 36 KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLP 115 (605)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhch
Confidence 345679999999999999999999997521 0
Q ss_pred -------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723 60 -------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL 107 (236)
Q Consensus 60 -------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l 107 (236)
.+..++|++|+.++.+++.+++ |. ..+.|..++.......+...+
T Consensus 116 ~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il 191 (605)
T PRK05896 116 TTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIA 191 (605)
T ss_pred hhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHH
Confidence 2367888888889999999888 44 468888888877776666544
No 179
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.53 E-value=2.9e-07 Score=80.06 Aligned_cols=55 Identities=20% Similarity=0.270 Sum_probs=44.8
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
..++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .|-|.+....+..++.
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~ 80 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDR 80 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCH
Confidence 35789999999999 8899999999999999999998776 6666666655555544
No 180
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.53 E-value=3.6e-07 Score=79.45 Aligned_cols=97 Identities=15% Similarity=0.187 Sum_probs=67.5
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcccE------Eecc
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKR------IEMS 92 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d~~------i~~~ 92 (236)
....+++|.++.| +.|+||||+||||++|.|.+.+-+. .|.|-..+-.|..=+.+.+| ++..+ ....
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~---~G~v~V~G~~Pf~~~~~~~~--~~~~v~gqk~ql~Wd 112 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT---SGKVRVNGKDPFRRREEYLR--SIGLVMGQKLQLWWD 112 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccC---CCeEEecCcCcchhHHHHHH--HHHHHhhhhheeeee
Confidence 4678899999999 8899999999999999999999888 88888888888776666666 43222 2445
Q ss_pred cCCHHHHHHHHHHhhcccchhhHHHHHHHHH
Q 048723 93 YCCFEAFMVLAKSYLDIESHAFFAEINSLLA 123 (236)
Q Consensus 93 ~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~ 123 (236)
.|..+... +.+....+....+..+...+.+
T Consensus 113 lp~~ds~~-v~~~Iy~Ipd~~F~~r~~~l~e 142 (325)
T COG4586 113 LPALDSLE-VLKLIYEIPDDEFAERLDFLTE 142 (325)
T ss_pred chhhhhHH-HHHHHHhCCHHHHHHHHHHHHH
Confidence 56555554 3444444444444444444433
No 181
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.53 E-value=2.6e-07 Score=81.11 Aligned_cols=65 Identities=18% Similarity=0.271 Sum_probs=49.6
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcccEE
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRI 89 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d~~i 89 (236)
..+.++++.+.+| +.|+||||+|||||+++|++.+.+. .|-|.+....+...++..++. ++.+.+
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~-~i~~v~ 87 (279)
T PRK13650 21 YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRH-KIGMVF 87 (279)
T ss_pred eeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHh-hceEEE
Confidence 3788999999888 8999999999999999999998877 677777776665555443332 444433
No 182
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.53 E-value=4.7e-07 Score=81.62 Aligned_cols=71 Identities=27% Similarity=0.410 Sum_probs=53.8
Q ss_pred cceEEECCCCCChHHHHHHHHhhcCCc---c-------------------------------------------------
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLNYD---L------------------------------------------------- 59 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~~~---~------------------------------------------------- 59 (236)
++++|+||||||||||++.|+.-.... |
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~f 242 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTF 242 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcc
Confidence 349999999999999999999987655 3
Q ss_pred -----cCceEEEEee--cCccccchHHHhcCCcccEEecccCCHHHHHHHHHH
Q 048723 60 -----VGEKGIVFTT--NYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKS 105 (236)
Q Consensus 60 -----~~~~~vi~tt--N~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~ 105 (236)
.|.+.+|++| |..-.|..+|+.++|+ |-+.....+....|+++
T Consensus 243 LP~VE~G~I~lIGATTENPSFqln~aLlSRC~V---fvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 243 LPHVENGDITLIGATTENPSFQLNAALLSRCRV---FVLEKLPVNAVVTILMR 292 (554)
T ss_pred cceeccCceEEEecccCCCccchhHHHHhccce---eEeccCCHHHHHHHHHH
Confidence 4577888766 6667789999997665 55555556666666665
No 183
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.53 E-value=1.9e-07 Score=81.02 Aligned_cols=59 Identities=24% Similarity=0.417 Sum_probs=45.5
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHH
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPAL 79 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al 79 (236)
....++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .|-|.+.......+++..
T Consensus 13 ~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~ 73 (258)
T PRK13548 13 GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAE 73 (258)
T ss_pred CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHH
Confidence 3445789999999888 8899999999999999999998766 565666555454455443
No 184
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.52 E-value=6e-08 Score=81.02 Aligned_cols=50 Identities=20% Similarity=0.330 Sum_probs=41.2
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV 72 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~ 72 (236)
..++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .|.|.+....+
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~ 64 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPI 64 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEh
Confidence 45788999999888 8899999999999999999998776 66666655433
No 185
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.52 E-value=3.2e-08 Score=84.52 Aligned_cols=67 Identities=24% Similarity=0.369 Sum_probs=59.5
Q ss_pred HHHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 12 DLKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 12 ~v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
.+...|..-..++++++...+| +.|+||||+||||+...|.+.+.++ .+.|++.+.++..++|..+.
T Consensus 9 ~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~ia 77 (250)
T COG0411 9 GLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIA 77 (250)
T ss_pred cceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHH
Confidence 3455566777889999999999 8899999999999999999999999 89999999999999997765
No 186
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=1.3e-06 Score=82.91 Aligned_cols=43 Identities=14% Similarity=0.204 Sum_probs=33.3
Q ss_pred ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723 62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL 107 (236)
Q Consensus 62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l 107 (236)
..++|+++|.+..+++.+.. |. ..+.|..++.+.....++..+
T Consensus 146 ~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~ 188 (504)
T PRK14963 146 HVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLL 188 (504)
T ss_pred CEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHH
Confidence 56788888999999998887 44 568898888887776666554
No 187
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.52 E-value=2.9e-07 Score=80.58 Aligned_cols=58 Identities=17% Similarity=0.248 Sum_probs=46.8
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHH
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALI 80 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~ 80 (236)
..+++++++.+.+| +.|+||||+|||||+++|++.+.+. .|-|.+...++...+...+
T Consensus 18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 77 (274)
T PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWV 77 (274)
T ss_pred CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHH
Confidence 34789999999998 8899999999999999999998877 6777777666655554433
No 188
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.52 E-value=3.3e-07 Score=79.95 Aligned_cols=55 Identities=20% Similarity=0.324 Sum_probs=44.7
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
..++.++++.+.+| ++|+||+|+|||||+++|++.+.+. .|-|.+....+..+++
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---sG~i~~~g~~~~~~~~ 81 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS---QGNVSWRGEPLAKLNR 81 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEeccccCh
Confidence 45789999999888 8899999999999999999988766 5666666655655554
No 189
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=7.3e-07 Score=84.22 Aligned_cols=45 Identities=20% Similarity=0.207 Sum_probs=34.2
Q ss_pred ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcc
Q 048723 62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDI 109 (236)
Q Consensus 62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~ 109 (236)
..++|++|+.++.+++++++ |. ..+.|..++.++....+..++..
T Consensus 149 ~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~ 193 (486)
T PRK14953 149 RTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNE 193 (486)
T ss_pred CeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHH
Confidence 56777778888899988887 44 46888888888887777765543
No 190
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.52 E-value=1e-06 Score=87.87 Aligned_cols=45 Identities=13% Similarity=0.061 Sum_probs=33.8
Q ss_pred CceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 61 GEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 61 ~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
..++||++|+.++.|.+.++. |- .++.|..++.+....++...+.
T Consensus 149 ~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~ 193 (824)
T PRK07764 149 EHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICA 193 (824)
T ss_pred CCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHH
Confidence 367888888888998888887 43 5688888887777766666543
No 191
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.52 E-value=3.5e-07 Score=80.12 Aligned_cols=51 Identities=14% Similarity=0.238 Sum_probs=42.1
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccc
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDK 74 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ 74 (236)
.++.++++.+.+| +.|+||||+|||||+++|++.+.+. .|-|.+...++..
T Consensus 21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~ 73 (280)
T PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITS 73 (280)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccc
Confidence 3788999999888 7899999999999999999998776 6666666655443
No 192
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.52 E-value=3.7e-07 Score=81.33 Aligned_cols=45 Identities=22% Similarity=0.371 Sum_probs=38.6
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEe
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFT 68 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~t 68 (236)
..++++++.+.+| +.|+||||+|||||+++|++.+.+. .+-|.+.
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~ 67 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWI 67 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEe
Confidence 4789999999998 8999999999999999999998776 4555554
No 193
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.51 E-value=3.8e-07 Score=77.12 Aligned_cols=53 Identities=28% Similarity=0.394 Sum_probs=44.0
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD 76 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld 76 (236)
.++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .|-|.+....+..++
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~ 73 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLS 73 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccc
Confidence 5789999999999 8899999999999999999998766 566666665555555
No 194
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.51 E-value=1.9e-07 Score=79.85 Aligned_cols=57 Identities=21% Similarity=0.364 Sum_probs=44.9
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
....++.++++.+.+| ++|+||+|+|||||+++|++.+.+. .|-+.+....+..+++
T Consensus 14 ~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~ 72 (241)
T PRK10895 14 KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPL 72 (241)
T ss_pred CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCH
Confidence 3445788999999888 8899999999999999999998766 5656665555555554
No 195
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.51 E-value=4e-07 Score=77.81 Aligned_cols=58 Identities=28% Similarity=0.415 Sum_probs=44.2
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhc--CCcccCceEEEEeecCccccchHH
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFL--NYDLVGEKGIVFTTNYVDKLDPAL 79 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l--~~~~~~~~~vi~ttN~~~~ld~al 79 (236)
...++.++++.+.+| ++|+||+|+|||||+++|++.+ .+. .|-|.+...++..+++..
T Consensus 12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~ 73 (243)
T TIGR01978 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPDE 73 (243)
T ss_pred CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHHH
Confidence 445788999999998 8899999999999999999985 334 455666555555555543
No 196
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.51 E-value=7.2e-07 Score=80.32 Aligned_cols=60 Identities=17% Similarity=0.173 Sum_probs=46.7
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHH
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALI 80 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~ 80 (236)
..+++++|.+.+| +.|+||||||||||+++|++.+.+.....|-|.+...++..++...+
T Consensus 30 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 30 TAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 4788999999999 88999999999999999999987531114666666666767766544
No 197
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.51 E-value=1.7e-07 Score=80.10 Aligned_cols=56 Identities=21% Similarity=0.314 Sum_probs=43.7
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD 76 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld 76 (236)
....++.++++.+.+| +.|+||||+|||||+++|++.+.+. .|-|.+....+...+
T Consensus 13 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~ 70 (239)
T cd03296 13 GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVP 70 (239)
T ss_pred CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCC
Confidence 3445788999998888 8899999999999999999998766 566666554444333
No 198
>PRK09087 hypothetical protein; Validated
Probab=98.51 E-value=6.3e-07 Score=76.55 Aligned_cols=77 Identities=16% Similarity=0.112 Sum_probs=53.5
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCCcc-------------------------------------------cCceEEEEee
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNYDL-------------------------------------------VGEKGIVFTT 69 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~~~-------------------------------------------~~~~~vi~tt 69 (236)
.++|+||+|||||+|+++++...+..+ .+..+++.++
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~ 125 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAANAAAEGPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSR 125 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHHhhhcCeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECC
Confidence 389999999999999999985543322 2333444444
Q ss_pred cCccc---cchHHHhcCCcccEEecccCCHHHHHHHHHHhhcc
Q 048723 70 NYVDK---LDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDI 109 (236)
Q Consensus 70 N~~~~---ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~ 109 (236)
..+.. ..++++.+..-...+.+..|+.+.+..+++.++..
T Consensus 126 ~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~ 168 (226)
T PRK09087 126 LWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFAD 168 (226)
T ss_pred CChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHH
Confidence 33332 35677763333588899999999999999887643
No 199
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.50 E-value=1.8e-07 Score=81.08 Aligned_cols=49 Identities=29% Similarity=0.582 Sum_probs=40.0
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN 70 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN 70 (236)
...++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .|-|.+...
T Consensus 13 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~ 63 (255)
T PRK11248 13 GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGK 63 (255)
T ss_pred CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCE
Confidence 345788999999888 8899999999999999999998766 555555443
No 200
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.50 E-value=3.7e-07 Score=76.49 Aligned_cols=51 Identities=24% Similarity=0.352 Sum_probs=41.4
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV 72 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~ 72 (236)
...++.++++.+.+| +.|+||||+|||||+++|++.+.+. .|.+.+..+..
T Consensus 12 ~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~ 64 (213)
T cd03262 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKL 64 (213)
T ss_pred CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEC
Confidence 345788889988888 8899999999999999999998776 56666655444
No 201
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.50 E-value=7.9e-07 Score=75.40 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=23.1
Q ss_pred CCcceEEECCCCCChHHHHHHHHhhc
Q 048723 30 WKRGYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 30 ~~rg~lL~GPpGtGKTtlakaia~~l 55 (236)
..+.++|+||||||||+|++++++..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34569999999999999999999875
No 202
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.50 E-value=9.5e-08 Score=81.74 Aligned_cols=58 Identities=22% Similarity=0.363 Sum_probs=45.9
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA 78 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a 78 (236)
....++.++++.+.+| +.|+||||+|||||+++|++.+.+. .|-+.+....+..+++.
T Consensus 13 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~ 72 (242)
T TIGR03411 13 DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEH 72 (242)
T ss_pred CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHH
Confidence 3345788999999888 7899999999999999999998766 56666666555555554
No 203
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.50 E-value=2.9e-07 Score=80.88 Aligned_cols=57 Identities=16% Similarity=0.123 Sum_probs=46.7
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHH
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALI 80 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~ 80 (236)
.++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .|-|.+.+.++...+...+
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~ 79 (279)
T PRK13635 21 YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDV 79 (279)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHH
Confidence 4889999999998 8899999999999999999999877 6777777766665554333
No 204
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=4.8e-07 Score=86.24 Aligned_cols=75 Identities=20% Similarity=0.296 Sum_probs=58.1
Q ss_pred CCcceEEECCCCCChHHHHHHHHhhcCCc------------------------c--------------------------
Q 048723 30 WKRGYLLYGPPGTGKSTMIAAMANFLNYD------------------------L-------------------------- 59 (236)
Q Consensus 30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~------------------------~-------------------------- 59 (236)
++..+||+||||+||||+++++|+.++.. +
T Consensus 37 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~ 116 (527)
T PRK14969 37 LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPT 116 (527)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcc
Confidence 44568999999999999999999998541 0
Q ss_pred ------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723 60 ------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL 107 (236)
Q Consensus 60 ------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l 107 (236)
.+.+.+|++|++++.+++.++. |. ..+.|..++.+.....+...+
T Consensus 117 ~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il 191 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHIL 191 (527)
T ss_pred cCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHH
Confidence 2367788888889999888777 43 668888888877776665554
No 205
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.49 E-value=1.5e-07 Score=86.78 Aligned_cols=62 Identities=19% Similarity=0.282 Sum_probs=50.4
Q ss_pred hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
|.+..++++++|.+.+| +.|+||||+|||||+++|++.+.+. .|.|.+....+..+++..++
T Consensus 13 y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~ 76 (402)
T PRK09536 13 FGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAAS 76 (402)
T ss_pred ECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHh
Confidence 34456789999999999 8899999999999999999999877 67777777677777654444
No 206
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.49 E-value=2e-06 Score=85.05 Aligned_cols=74 Identities=22% Similarity=0.381 Sum_probs=60.4
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCCcc-----------------------------------------------------
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNYDL----------------------------------------------------- 59 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~~~----------------------------------------------------- 59 (236)
.++|+||||||||+++++||..++.++
T Consensus 490 ~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhh
Confidence 389999999999999999999986554
Q ss_pred --------------------------cCceEEEEeecCc-------------------------cccchHHHhcCCcccE
Q 048723 60 --------------------------VGEKGIVFTTNYV-------------------------DKLDPALIRRGRMDKR 88 (236)
Q Consensus 60 --------------------------~~~~~vi~ttN~~-------------------------~~ld~al~r~gR~d~~ 88 (236)
..+.+||+|||.- ..+.|.++. |+|.+
T Consensus 570 ~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~i 647 (758)
T PRK11034 570 HPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNI 647 (758)
T ss_pred hHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEE
Confidence 1266799999822 236678877 99999
Q ss_pred EecccCCHHHHHHHHHHhhc
Q 048723 89 IEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 89 i~~~~p~~~~~~~i~~~~l~ 108 (236)
|.|...+.+....|+..++.
T Consensus 648 i~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 648 IWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred EEcCCCCHHHHHHHHHHHHH
Confidence 99999999999989887763
No 207
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.49 E-value=7.6e-07 Score=87.11 Aligned_cols=75 Identities=24% Similarity=0.379 Sum_probs=58.7
Q ss_pred CCcceEEECCCCCChHHHHHHHHhhcCCc---------------------c-----------------------------
Q 048723 30 WKRGYLLYGPPGTGKSTMIAAMANFLNYD---------------------L----------------------------- 59 (236)
Q Consensus 30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~---------------------~----------------------------- 59 (236)
+++.|||+||+|+|||++|+++|..+.+. +
T Consensus 39 l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~ 118 (725)
T PRK07133 39 ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSK 118 (725)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCC
Confidence 45669999999999999999999887431 0
Q ss_pred ---------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723 60 ---------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL 107 (236)
Q Consensus 60 ---------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l 107 (236)
.+.+++|++|+.++.|++.+++ |. ..+.|..++.+.....+...+
T Consensus 119 ~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il 190 (725)
T PRK07133 119 YKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFIL 190 (725)
T ss_pred CEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHH
Confidence 2367888888899999999888 54 578898888887776666543
No 208
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.49 E-value=1.7e-07 Score=77.05 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=43.6
Q ss_pred HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
++.++++.+.+| +.|+||||+|||||+++|++.+.+. .+-+.+...++...++
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~ 69 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA---SGEITLDGKPVTRRSP 69 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccCH
Confidence 678888888888 8899999999999999999999877 6666666655555554
No 209
>PRK08118 topology modulation protein; Reviewed
Probab=98.49 E-value=4e-07 Score=74.16 Aligned_cols=72 Identities=25% Similarity=0.279 Sum_probs=53.6
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCCcc---------------------------cCceEEEEeecCccccchHHHhcCCc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNYDL---------------------------VGEKGIVFTTNYVDKLDPALIRRGRM 85 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~~~---------------------------~~~~~vi~ttN~~~~ld~al~r~gR~ 85 (236)
.++++|||||||||+++.|+..++.++ ...--.|+.+|+...++..+ . +.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~~~~~~~~~~~~~~~wVidG~~~~~~~~~l-~--~~ 79 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKEEQITVQNELVKEDEWIIDGNYGGTMDIRL-N--AA 79 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHHHHHHHHHHHhcCCCEEEeCCcchHHHHHH-H--hC
Confidence 489999999999999999999998774 11223566777776665433 2 58
Q ss_pred ccEEecccCCHHHHHHHHHHhh
Q 048723 86 DKRIEMSYCCFEAFMVLAKSYL 107 (236)
Q Consensus 86 d~~i~~~~p~~~~~~~i~~~~l 107 (236)
|.+|++..|...-...++++++
T Consensus 80 d~vi~Ld~p~~~~~~R~~~R~~ 101 (167)
T PRK08118 80 DTIIFLDIPRTICLYRAFKRRV 101 (167)
T ss_pred CEEEEEeCCHHHHHHHHHHHHH
Confidence 8889998888776666666654
No 210
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.49 E-value=5e-06 Score=83.55 Aligned_cols=74 Identities=24% Similarity=0.362 Sum_probs=59.8
Q ss_pred CcceEEECCCCCChHHHHHHHHhhc----------CCcc-----------------------------------------
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFL----------NYDL----------------------------------------- 59 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l----------~~~~----------------------------------------- 59 (236)
..+++|+||||||||++++.||..+ ++.+
T Consensus 199 ~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfID 278 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFID 278 (857)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEe
Confidence 3458999999999999999999987 2332
Q ss_pred --------------------------cCceEEEEeecCcc-----ccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723 60 --------------------------VGEKGIVFTTNYVD-----KLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL 107 (236)
Q Consensus 60 --------------------------~~~~~vi~ttN~~~-----~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l 107 (236)
.|...+|++|+..+ .+|+++.| ||+ .|.++.|+.+.+..+++.+.
T Consensus 279 Eih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 279 ELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred cHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHh
Confidence 34577888888776 48999999 996 68899999999888887654
No 211
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.49 E-value=4.4e-07 Score=76.91 Aligned_cols=55 Identities=27% Similarity=0.403 Sum_probs=43.7
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhc-----CCcccCceEEEEeecCccccc
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFL-----NYDLVGEKGIVFTTNYVDKLD 76 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l-----~~~~~~~~~vi~ttN~~~~ld 76 (236)
...++.++++.+.+| +.|+||+|+|||||+++|++.+ .+. .|-|.+...++..++
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~ 73 (227)
T cd03260 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLD 73 (227)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcc
Confidence 345788999999888 8899999999999999999998 555 566666665554444
No 212
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.48 E-value=3.1e-07 Score=77.98 Aligned_cols=58 Identities=21% Similarity=0.094 Sum_probs=47.0
Q ss_pred HHHHHHHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEe
Q 048723 8 EIKKDLKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFT 68 (236)
Q Consensus 8 ~i~~~v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~t 68 (236)
-.++.+...|....++.++++.+.+| +.|+||+|+|||||+++|++...+. .+-+.+.
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~ 82 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD---SGTVTVR 82 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEC
Confidence 34566666677777999999999998 8899999999999999999988766 4555443
No 213
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.48 E-value=1.9e-07 Score=80.43 Aligned_cols=60 Identities=20% Similarity=0.313 Sum_probs=47.0
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
...++.++++.+.+| +.|+||||+|||||+++|++...+. .|.+.+....+...++..++
T Consensus 17 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~ 78 (255)
T PRK11300 17 GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIA 78 (255)
T ss_pred CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHH
Confidence 345788999999888 8899999999999999999998776 66666666555555554433
No 214
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.48 E-value=3.1e-07 Score=79.69 Aligned_cols=53 Identities=25% Similarity=0.296 Sum_probs=46.3
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD 76 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld 76 (236)
..+.+++|.+.+| +.|+|.+||||||++++|.+...+. .|-|++...++..++
T Consensus 27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~~~~ 81 (268)
T COG4608 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDITKLS 81 (268)
T ss_pred EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCC---CceEEEcCcchhhcc
Confidence 4577899999999 8899999999999999999999988 888999887765554
No 215
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.48 E-value=1.3e-06 Score=86.34 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=27.4
Q ss_pred cchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 75 LDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 75 ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
++|.++. |+|.+|.|...+.+....|+...+.
T Consensus 632 f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 632 FSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVD 663 (731)
T ss_pred cChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 5677776 9999999999999999999988764
No 216
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.48 E-value=1.6e-07 Score=76.39 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=44.0
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHH
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPAL 79 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al 79 (236)
.++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .+-+.+....+..+++..
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~ 73 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLES 73 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhhhcCHHH
Confidence 4788889988888 8899999999999999999998776 565666554444455433
No 217
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=5.4e-07 Score=78.55 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=45.1
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
.++.++++.+.+| ++|+||||+|||||+++|++.+.+. .|-|.+....+...+..-++
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~ 82 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLR 82 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHH
Confidence 3788999999888 8899999999999999999998776 66666666555445443333
No 218
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.47 E-value=4.3e-07 Score=78.25 Aligned_cols=52 Identities=23% Similarity=0.267 Sum_probs=42.4
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcc
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVD 73 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~ 73 (236)
...++.++++.+.+| ++|+||||+|||||+++|++.+.+. .|-+.+....+.
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~ 65 (252)
T TIGR03005 12 ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLY 65 (252)
T ss_pred CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcc
Confidence 345788999999988 8899999999999999999998776 566666555443
No 219
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.47 E-value=7.6e-08 Score=78.82 Aligned_cols=54 Identities=26% Similarity=0.439 Sum_probs=43.8
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD 76 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld 76 (236)
..++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .+-|.+..+.+..++
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~ 68 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD---SGSILIDGEDLTDLE 68 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccc
Confidence 45788889999888 8899999999999999999998766 666666665555554
No 220
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=3.6e-07 Score=80.03 Aligned_cols=54 Identities=19% Similarity=0.270 Sum_probs=44.4
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD 76 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld 76 (236)
..+++++++.+.+| +.|+||||+|||||+++|++.+.+. .|-|.+....+..++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~ 70 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFS 70 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccc
Confidence 34789999999999 8899999999999999999998776 666666665555544
No 221
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=7.1e-07 Score=85.97 Aligned_cols=76 Identities=17% Similarity=0.286 Sum_probs=57.9
Q ss_pred CCCcceEEECCCCCChHHHHHHHHhhcCCc------------------------c-------------------------
Q 048723 29 AWKRGYLLYGPPGTGKSTMIAAMANFLNYD------------------------L------------------------- 59 (236)
Q Consensus 29 ~~~rg~lL~GPpGtGKTtlakaia~~l~~~------------------------~------------------------- 59 (236)
.++..|||+||+|+||||+++++++.++.. +
T Consensus 36 ~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p 115 (576)
T PRK14965 36 RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLP 115 (576)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhcc
Confidence 345669999999999999999999998531 1
Q ss_pred -------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723 60 -------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL 107 (236)
Q Consensus 60 -------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l 107 (236)
.+.++||++|+.++.|++.++. |. ..+.|..++.......+...+
T Consensus 116 ~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~ 191 (576)
T PRK14965 116 SRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIA 191 (576)
T ss_pred ccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHH
Confidence 2367888889999999999887 43 567888777766665555433
No 222
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.46 E-value=1.8e-07 Score=84.96 Aligned_cols=56 Identities=25% Similarity=0.389 Sum_probs=45.8
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
...++.++++.+.+| +.|+||+|||||||+++|++.+.++ .|-|.+.+.++..+++
T Consensus 14 ~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~ 71 (353)
T PRK10851 14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHA 71 (353)
T ss_pred CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCH
Confidence 345788899999888 8899999999999999999998877 6777776666655554
No 223
>PRK08727 hypothetical protein; Validated
Probab=98.46 E-value=6.6e-07 Score=76.65 Aligned_cols=74 Identities=23% Similarity=0.239 Sum_probs=54.1
Q ss_pred cceEEECCCCCChHHHHHHHHhhcC---Ccc-------------------------------------------------
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLN---YDL------------------------------------------------- 59 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~---~~~------------------------------------------------- 59 (236)
..++|+||+|||||+|+.++++.+. ..+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~ 121 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDGLESIAGQREDEVALFDFHNR 121 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHhcCCEEEEeCcccccCChHHHHHHHHHHHH
Confidence 3499999999999999999977753 221
Q ss_pred --cCceEEEEeec-Ccccc---chHHHhcCCc--ccEEecccCCHHHHHHHHHHhh
Q 048723 60 --VGEKGIVFTTN-YVDKL---DPALIRRGRM--DKRIEMSYCCFEAFMVLAKSYL 107 (236)
Q Consensus 60 --~~~~~vi~ttN-~~~~l---d~al~r~gR~--d~~i~~~~p~~~~~~~i~~~~l 107 (236)
...+.+|+|+| .+..+ ++++.+ |+ ...+.++.|+.+.+..+++.+.
T Consensus 122 ~~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a 175 (233)
T PRK08727 122 ARAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERA 175 (233)
T ss_pred HHHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHH
Confidence 11334555554 55555 678887 64 5778999999999999988754
No 224
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.46 E-value=1.1e-06 Score=84.59 Aligned_cols=86 Identities=17% Similarity=0.232 Sum_probs=61.6
Q ss_pred ceEEECCCCCChHHHHHHHHhhcC-----Ccc------------------------------------------------
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLN-----YDL------------------------------------------------ 59 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~-----~~~------------------------------------------------ 59 (236)
.++|||++|||||.|+++|++.+. ..+
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~t 395 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKEST 395 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHHH
Confidence 489999999999999999999863 222
Q ss_pred ------------cCceEEEEeecCc----cccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccchhhHHHH
Q 048723 60 ------------VGEKGIVFTTNYV----DKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFAEI 118 (236)
Q Consensus 60 ------------~~~~~vi~ttN~~----~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i 118 (236)
..+..+|+++|.. ..+++.|+.+......+.+..|+.+.|..|++.........+..++
T Consensus 396 qeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eV 470 (617)
T PRK14086 396 QEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEV 470 (617)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHH
Confidence 1134455666643 3577888883334677799999999999999987654444433333
No 225
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.46 E-value=2e-07 Score=79.51 Aligned_cols=54 Identities=22% Similarity=0.435 Sum_probs=43.7
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD 76 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld 76 (236)
..++.++++.+.+| +.|+||+|||||||+++|++.+.+. .|-|.+.+.++...+
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~ 69 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLK 69 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccC
Confidence 45788999999988 8899999999999999999998766 566666555555554
No 226
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=5.5e-07 Score=78.57 Aligned_cols=52 Identities=15% Similarity=0.277 Sum_probs=42.7
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV 72 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~ 72 (236)
.+..+++++++.+.+| ++|+||||+|||||+++|++.+.+. .|-|.+....+
T Consensus 12 ~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i 65 (271)
T PRK13638 12 QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPL 65 (271)
T ss_pred CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEc
Confidence 3445889999999988 8899999999999999999998777 66666655544
No 227
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.46 E-value=4.5e-07 Score=77.27 Aligned_cols=56 Identities=27% Similarity=0.457 Sum_probs=44.5
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
...+++++++.+.+| +.|+||+|+|||||+++|++.+.+. .|.|.+.+.....++.
T Consensus 12 ~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~ 69 (232)
T cd03300 12 GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPP 69 (232)
T ss_pred CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCh
Confidence 345788999998888 8899999999999999999999876 6666665555544443
No 228
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=2.3e-07 Score=79.24 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=45.7
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA 78 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a 78 (236)
...++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .|-+.+...+...+++.
T Consensus 17 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~ 75 (237)
T PRK11614 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTA 75 (237)
T ss_pred CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHH
Confidence 345788999999888 8899999999999999999998776 56666666555566554
No 229
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.46 E-value=1.7e-07 Score=76.40 Aligned_cols=55 Identities=20% Similarity=0.366 Sum_probs=44.0
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA 78 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a 78 (236)
..+.++++.+.+| +.|+||+|+|||||+++|++.+.+. .+-+.+.......+++.
T Consensus 16 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 72 (173)
T cd03246 16 PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT---SGRVRLDGADISQWDPN 72 (173)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEEcccCCHH
Confidence 4788889998888 8899999999999999999998776 56666655555555543
No 230
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.46 E-value=8.1e-07 Score=83.07 Aligned_cols=78 Identities=22% Similarity=0.313 Sum_probs=57.6
Q ss_pred cceEEECCCCCChHHHHHHHHhhcC---Ccc-------------------------------------------------
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLN---YDL------------------------------------------------- 59 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~---~~~------------------------------------------------- 59 (236)
.+++|+||||+|||+|+++|++.+. ..+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~~~q 221 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQ 221 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCChhhH
Confidence 4599999999999999999998753 221
Q ss_pred -----------cCceEEEEeecC-c---cccchHHHhcCCc--ccEEecccCCHHHHHHHHHHhhcccc
Q 048723 60 -----------VGEKGIVFTTNY-V---DKLDPALIRRGRM--DKRIEMSYCCFEAFMVLAKSYLDIES 111 (236)
Q Consensus 60 -----------~~~~~vi~ttN~-~---~~ld~al~r~gR~--d~~i~~~~p~~~~~~~i~~~~l~~~~ 111 (236)
.....+|+|+|. + ..+++++++ || ...+.+..|+.+.+..+++.......
T Consensus 222 eelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~ 288 (445)
T PRK12422 222 EEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALS 288 (445)
T ss_pred HHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcC
Confidence 123456666654 3 346788887 66 47888999999999999887765433
No 231
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.46 E-value=6.4e-07 Score=74.89 Aligned_cols=52 Identities=27% Similarity=0.435 Sum_probs=42.3
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcc
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVD 73 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~ 73 (236)
+..++.++++.+.+| ++|+||+|+|||||+++|++.+.+. .+-|.+....+.
T Consensus 12 ~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~ 65 (208)
T cd03268 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQ 65 (208)
T ss_pred CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCccc
Confidence 345788899998888 8899999999999999999998766 666666655443
No 232
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.45 E-value=2.7e-07 Score=88.60 Aligned_cols=59 Identities=25% Similarity=0.336 Sum_probs=51.2
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
+.++.++++.+++| ++++||+|||||||++.|++.+.+. .|.|.+.+.+...++.+-+|
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~ 416 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLR 416 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHH
Confidence 34788889888888 9999999999999999999999888 78888888888888876665
No 233
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=3.9e-07 Score=75.22 Aligned_cols=62 Identities=18% Similarity=0.341 Sum_probs=51.9
Q ss_pred HHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 13 LKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 13 v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
+........+|.+++|.+..| +.+.||||+|||||++.||+.+.+. .+-|.+.+..++..+.
T Consensus 8 L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~---~G~v~~~~~~i~~~~~ 71 (209)
T COG4133 8 LSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRE 71 (209)
T ss_pred hhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC---CCeEEecCCCCccchh
Confidence 333345567899999999999 7789999999999999999999998 8889998877776654
No 234
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=1e-06 Score=85.02 Aligned_cols=75 Identities=20% Similarity=0.286 Sum_probs=58.7
Q ss_pred CCcceEEECCCCCChHHHHHHHHhhcCCc------------------------c--------------------------
Q 048723 30 WKRGYLLYGPPGTGKSTMIAAMANFLNYD------------------------L-------------------------- 59 (236)
Q Consensus 30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~------------------------~-------------------------- 59 (236)
+...|||+||||+||||++++||+.+... +
T Consensus 37 i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~ 116 (624)
T PRK14959 37 VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPM 116 (624)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhh
Confidence 34569999999999999999999998752 0
Q ss_pred ------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723 60 ------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL 107 (236)
Q Consensus 60 ------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l 107 (236)
.+..++|++||.+..+.+.+++ |. ..|.|..++.++...++...+
T Consensus 117 ~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il 191 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVL 191 (624)
T ss_pred cCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHH
Confidence 2367888889988999888877 54 467888888877776666543
No 235
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.45 E-value=5e-07 Score=79.31 Aligned_cols=51 Identities=22% Similarity=0.259 Sum_probs=42.6
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccc
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDK 74 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ 74 (236)
.++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .|-|.+....+..
T Consensus 24 ~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~ 76 (280)
T PRK13633 24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSD 76 (280)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccc
Confidence 4899999999998 8899999999999999999998876 6666666555543
No 236
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.45 E-value=2.1e-07 Score=72.45 Aligned_cols=26 Identities=42% Similarity=0.649 Sum_probs=20.2
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCcc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYDL 59 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~~ 59 (236)
+||.|+||+|||+++++||..++..|
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f 27 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSF 27 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--E
T ss_pred EeeECCCccHHHHHHHHHHHHcCCce
Confidence 78999999999999999999999888
No 237
>PRK07261 topology modulation protein; Provisional
Probab=98.44 E-value=5.5e-07 Score=73.57 Aligned_cols=71 Identities=23% Similarity=0.350 Sum_probs=52.0
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCcc----------------------------cCceEEEEeecCccccchHHHhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYDL----------------------------VGEKGIVFTTNYVDKLDPALIRRGRM 85 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~~----------------------------~~~~~vi~ttN~~~~ld~al~r~gR~ 85 (236)
++++|||||||||+++.|+..++.++ .++. .|+.+|+...+-+..+. +.
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-wIidg~~~~~~~~~~l~--~a 79 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADISNFLLKHD-WIIDGNYSWCLYEERMQ--EA 79 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHHHHHhCCC-EEEcCcchhhhHHHHHH--HC
Confidence 78999999999999999999887665 1122 56666665534233444 68
Q ss_pred ccEEecccCCHHHHHHHHHHhh
Q 048723 86 DKRIEMSYCCFEAFMVLAKSYL 107 (236)
Q Consensus 86 d~~i~~~~p~~~~~~~i~~~~l 107 (236)
|.+|.+..|.......++++++
T Consensus 80 d~vI~Ld~p~~~~~~R~lkR~~ 101 (171)
T PRK07261 80 DQIIFLNFSRFNCLYRAFKRYL 101 (171)
T ss_pred CEEEEEcCCHHHHHHHHHHHHH
Confidence 8888988888777777766654
No 238
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.44 E-value=5.5e-07 Score=84.10 Aligned_cols=105 Identities=19% Similarity=0.265 Sum_probs=64.2
Q ss_pred cceEEECCCCCChHHHHHHHHhhcC-----Ccc-----------------------------------------------
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLN-----YDL----------------------------------------------- 59 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~-----~~~----------------------------------------------- 59 (236)
.+++||||||+|||+|+++|++.+. ..+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~ 210 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKT 210 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcH
Confidence 3599999999999999999999752 111
Q ss_pred --------------cCceEEEEee-cCccc---cchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccchhhHHHH-HH
Q 048723 60 --------------VGEKGIVFTT-NYVDK---LDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFAEI-NS 120 (236)
Q Consensus 60 --------------~~~~~vi~tt-N~~~~---ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i-~~ 120 (236)
.....+++++ +++.. +++.++.+......+.+..|+.+.+..|++.........+..++ ..
T Consensus 211 ~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~ 290 (440)
T PRK14088 211 GVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNF 290 (440)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 1123455554 45544 45566663333567889999999999999887653333333333 33
Q ss_pred HHHcCCCCHHHHHHHH
Q 048723 121 LLAETNMASADVAENL 136 (236)
Q Consensus 121 ll~~~gls~a~i~~~l 136 (236)
++....=+..++...+
T Consensus 291 Ia~~~~~~~R~L~g~l 306 (440)
T PRK14088 291 VAENVDDNLRRLRGAI 306 (440)
T ss_pred HHhccccCHHHHHHHH
Confidence 3333333444444333
No 239
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.44 E-value=1.2e-06 Score=66.99 Aligned_cols=25 Identities=60% Similarity=1.007 Sum_probs=22.9
Q ss_pred CcceEEECCCCCChHHHHHHHHhhc
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l 55 (236)
.+.++++||||||||++++.+++.+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4569999999999999999999987
No 240
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.44 E-value=5.9e-07 Score=79.23 Aligned_cols=49 Identities=27% Similarity=0.337 Sum_probs=41.6
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV 72 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~ 72 (236)
..++++++.+.+| +.|+||+|+|||||+++|++.+.+. .|-+.+.+.++
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i 70 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVV 70 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEC
Confidence 3788999999999 8999999999999999999998877 66666655544
No 241
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.44 E-value=4.3e-07 Score=78.01 Aligned_cols=68 Identities=18% Similarity=0.288 Sum_probs=48.7
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccc-cchHHHhcCCcccEEecc
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDK-LDPALIRRGRMDKRIEMS 92 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~-ld~al~r~gR~d~~i~~~ 92 (236)
..+.++++.+..| ++|+||||||||||++.+++.+.+. .+.|.+...+... .+...+|. ++..++..+
T Consensus 18 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~-~vG~VfQnp 88 (235)
T COG1122 18 AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQ-KVGLVFQNP 88 (235)
T ss_pred eeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhc-ceEEEEECc
Confidence 5677888888888 8899999999999999999999888 6666665544432 23333332 565555443
No 242
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.44 E-value=5.6e-07 Score=76.69 Aligned_cols=48 Identities=19% Similarity=0.403 Sum_probs=37.3
Q ss_pred hhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccc
Q 048723 24 AKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDK 74 (236)
Q Consensus 24 ~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ 74 (236)
.++++.+.+| +.|+||+|+|||||+++|++.+.+. .|-|.+....+..
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~ 51 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITE 51 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCC
Confidence 4567777777 8899999999999999999998766 5656655544433
No 243
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.43 E-value=4e-06 Score=75.60 Aligned_cols=44 Identities=18% Similarity=0.111 Sum_probs=34.4
Q ss_pred ceEEEEeecCcc-ccchHHHhcCCcccEEecccCCH-HHHHHHHHHhh
Q 048723 62 EKGIVFTTNYVD-KLDPALIRRGRMDKRIEMSYCCF-EAFMVLAKSYL 107 (236)
Q Consensus 62 ~~~vi~ttN~~~-~ld~al~r~gR~d~~i~~~~p~~-~~~~~i~~~~l 107 (236)
..++++++|..+ .++++++. ||...+.+++|.. +++..+++...
T Consensus 171 rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 171 RFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred CEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhh
Confidence 356777778655 58999999 9999999999876 77777877653
No 244
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.43 E-value=7e-07 Score=76.28 Aligned_cols=53 Identities=26% Similarity=0.591 Sum_probs=43.4
Q ss_pred HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
.+.++++.+.+| ++|+||+|+|||||+++|++.+.+. .|-+.+.+.++...++
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~ 68 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPP 68 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCCh
Confidence 688888988888 8899999999999999999998777 6666666655555544
No 245
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.43 E-value=6.4e-07 Score=87.06 Aligned_cols=54 Identities=28% Similarity=0.401 Sum_probs=44.5
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
.++.+++|.+.+| +.|+||||||||||+++|++.+.+. .|-|.+....+..+++
T Consensus 338 ~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~i~~~~~ 393 (623)
T PRK10261 338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ---GGEIIFNGQRIDTLSP 393 (623)
T ss_pred EEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CcEEEECCEECCcCCH
Confidence 4688899999999 8899999999999999999998776 6777776665555544
No 246
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.43 E-value=2e-07 Score=78.21 Aligned_cols=51 Identities=25% Similarity=0.367 Sum_probs=41.4
Q ss_pred hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723 17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN 70 (236)
Q Consensus 17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN 70 (236)
+....++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .|-|.+...
T Consensus 9 ~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~ 61 (213)
T cd03235 9 YGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGK 61 (213)
T ss_pred ECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCc
Confidence 33445789999999888 8899999999999999999998776 566665543
No 247
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.43 E-value=8e-07 Score=78.31 Aligned_cols=50 Identities=22% Similarity=0.302 Sum_probs=42.4
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcc
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVD 73 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~ 73 (236)
.+++++++.+.+| +.|+||||+|||||+++|++.+.+. .|.|.+...++.
T Consensus 21 ~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~ 72 (287)
T PRK13641 21 KGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHIT 72 (287)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECc
Confidence 4789999999998 8899999999999999999998877 676776665543
No 248
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.43 E-value=6e-07 Score=80.49 Aligned_cols=48 Identities=21% Similarity=0.414 Sum_probs=40.7
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecC
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNY 71 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~ 71 (236)
..++++++.+.+| +.|+||+|||||||+++|++.+.+. .|-|.+.+.+
T Consensus 40 ~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~ 89 (320)
T PRK13631 40 VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIY 89 (320)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEE
Confidence 4799999999999 8899999999999999999998877 5666665433
No 249
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=2.4e-06 Score=77.72 Aligned_cols=76 Identities=17% Similarity=0.269 Sum_probs=57.1
Q ss_pred CCCcceEEECCCCCChHHHHHHHHhhcCC----------cc---------------------------------------
Q 048723 29 AWKRGYLLYGPPGTGKSTMIAAMANFLNY----------DL--------------------------------------- 59 (236)
Q Consensus 29 ~~~rg~lL~GPpGtGKTtlakaia~~l~~----------~~--------------------------------------- 59 (236)
.+++.++|+||||+|||++++++++.+.. ++
T Consensus 37 ~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE 116 (367)
T PRK14970 37 HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDE 116 (367)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeC
Confidence 34567999999999999999999998743 11
Q ss_pred -------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723 60 -------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL 107 (236)
Q Consensus 60 -------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l 107 (236)
....++|++++....+.+++.+ |. ..+.+..|+.++...++....
T Consensus 117 ~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~ 180 (367)
T PRK14970 117 VHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIA 180 (367)
T ss_pred hhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHH
Confidence 1245777788888899998887 44 458888888777666655543
No 250
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.43 E-value=1e-06 Score=80.34 Aligned_cols=126 Identities=18% Similarity=0.190 Sum_probs=81.9
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcccEE--ecccCCH
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRI--EMSYCCF 96 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d~~i--~~~~p~~ 96 (236)
...+++++..++| +-|+|.+||||||+..+|.+.+... +-|.|.+.+++.++...+||-|-++.+ .-+|-+.
T Consensus 301 ~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~----G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSL 376 (534)
T COG4172 301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ----GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSL 376 (534)
T ss_pred EEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC----ceEEECCccccccChhhhhhhhhhceEEEeCCCCCC
Confidence 3456788888888 8899999999999999999988755 788889999999988777665544444 4444343
Q ss_pred HHHHHHHHH-------hh-cccchhhHHHHHHHHHcCCCCHHHHHHHHcccccccChHHHHH
Q 048723 97 EAFMVLAKS-------YL-DIESHAFFAEINSLLAETNMASADVAENLMPKSDEEDADSCLK 150 (236)
Q Consensus 97 ~~~~~i~~~-------~l-~~~~~~~~~~i~~ll~~~gls~a~i~~~l~~~~~~~~~~~~~~ 150 (236)
.-|..+... |- .....+....+...+.+.|+.|+....+=-..|+....++.+.
T Consensus 377 sPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIA 438 (534)
T COG4172 377 SPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIA 438 (534)
T ss_pred CcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHH
Confidence 333322221 21 1223334556667777888877754433333555555544433
No 251
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.43 E-value=5.1e-07 Score=79.69 Aligned_cols=67 Identities=15% Similarity=0.213 Sum_probs=55.1
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcC--CcccEE
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRG--RMDKRI 89 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~g--R~d~~i 89 (236)
...++++++.+++| +.++|.+|+|||||+++|...-.++ .|-|+..+.++..++..-+|.- ++.+++
T Consensus 19 ~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIF 89 (339)
T COG1135 19 VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIF 89 (339)
T ss_pred eeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEe
Confidence 45788899999999 7899999999999999999888888 8888888888888887655532 455554
No 252
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.42 E-value=1.4e-06 Score=83.70 Aligned_cols=75 Identities=24% Similarity=0.345 Sum_probs=58.5
Q ss_pred CCcceEEECCCCCChHHHHHHHHhhcCCc------------------------c--------------------------
Q 048723 30 WKRGYLLYGPPGTGKSTMIAAMANFLNYD------------------------L-------------------------- 59 (236)
Q Consensus 30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~------------------------~-------------------------- 59 (236)
++..|||+||||+||||+++++|+.+... +
T Consensus 37 i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~ 116 (563)
T PRK06647 37 IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPA 116 (563)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchh
Confidence 45569999999999999999999998642 1
Q ss_pred ------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723 60 ------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL 107 (236)
Q Consensus 60 ------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l 107 (236)
....++|++|+.+..+.++++. |. ..+.|..++.+.....++...
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~S--Rc-~~~~f~~l~~~el~~~L~~i~ 191 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKS--RC-QHFNFRLLSLEKIYNMLKKVC 191 (563)
T ss_pred cCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHH--hc-eEEEecCCCHHHHHHHHHHHH
Confidence 2357888888888999999888 54 457888888877776666554
No 253
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.42 E-value=8.8e-07 Score=83.65 Aligned_cols=77 Identities=23% Similarity=0.370 Sum_probs=61.5
Q ss_pred CCCcceEEECCCCCChHHHHHHHHhhcCCcc-------------------------------------------------
Q 048723 29 AWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------------------------------- 59 (236)
Q Consensus 29 ~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------------------------------- 59 (236)
.+..+|+|.||.|+||||++|.+|+.+++.-
T Consensus 36 ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P 115 (515)
T COG2812 36 RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAP 115 (515)
T ss_pred cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCC
Confidence 3456699999999999999999999997662
Q ss_pred -------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 60 -------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 60 -------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
...++||++|..++.+|+-++.++ ..+.|..-+.+.....+...+.
T Consensus 116 ~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRc---q~f~fkri~~~~I~~~L~~i~~ 192 (515)
T COG2812 116 SEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRC---QRFDFKRLDLEEIAKHLAAILD 192 (515)
T ss_pred ccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhcc---ccccccCCCHHHHHHHHHHHHH
Confidence 338999999999999999999854 3466777777776666666554
No 254
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.42 E-value=5.7e-07 Score=78.47 Aligned_cols=56 Identities=21% Similarity=0.399 Sum_probs=44.4
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
...++.++++.+.+| ++|+||+|+|||||+++|++.+.+. .+-|.+....+..+++
T Consensus 19 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~ 76 (269)
T PRK11831 19 NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSR 76 (269)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccCh
Confidence 345788899999888 8899999999999999999998766 5666666555554443
No 255
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.42 E-value=7.7e-07 Score=78.01 Aligned_cols=54 Identities=22% Similarity=0.295 Sum_probs=43.7
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
.++.++++.+.+| +.|+||||+|||||+++|++.+.+. .|-|.+....+...++
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~ 73 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENI 73 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCH
Confidence 4789999999999 7899999999999999999998877 6666665554444443
No 256
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.42 E-value=6.3e-07 Score=78.94 Aligned_cols=49 Identities=20% Similarity=0.431 Sum_probs=41.4
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV 72 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~ 72 (236)
.+++++++.+.+| +.|+||+|+|||||+++|++.+.+. .|-|.+....+
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i 71 (286)
T PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITI 71 (286)
T ss_pred CceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEC
Confidence 4899999999998 8899999999999999999998877 66666655444
No 257
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.42 E-value=6.7e-07 Score=78.61 Aligned_cols=57 Identities=23% Similarity=0.170 Sum_probs=43.2
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
.++.++++.+.+| +.|+||+|+|||||+++|++.+.+.-...|-|.+.+..+...+.
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~ 79 (282)
T PRK13640 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTV 79 (282)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCH
Confidence 4789999999999 88999999999999999999987651001556666555544443
No 258
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.42 E-value=6.4e-07 Score=79.10 Aligned_cols=50 Identities=16% Similarity=0.296 Sum_probs=42.6
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcc
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVD 73 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~ 73 (236)
.+++++++.+.+| +.|+||+|+|||||+++|++.+.+. .|-|.+...++.
T Consensus 21 ~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~ 72 (290)
T PRK13634 21 RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVIT 72 (290)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECc
Confidence 4789999999999 8899999999999999999998877 676776665553
No 259
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.42 E-value=7.4e-07 Score=75.82 Aligned_cols=47 Identities=26% Similarity=0.359 Sum_probs=37.3
Q ss_pred HhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC----cccCceEEEEeecCc
Q 048723 23 CAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY----DLVGEKGIVFTTNYV 72 (236)
Q Consensus 23 ~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~----~~~~~~~vi~ttN~~ 72 (236)
++++++.+.+| ++|+||+|+|||||+++|++.+.+ . .|.|.+...++
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~ 54 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPL 54 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEec
Confidence 46677887777 889999999999999999999876 4 55565555443
No 260
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.42 E-value=3.5e-07 Score=75.99 Aligned_cols=55 Identities=18% Similarity=0.336 Sum_probs=43.3
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD 76 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld 76 (236)
...++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .+-+.+...++...+
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~ 68 (198)
T TIGR01189 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD---SGEVRWNGTALAEQR 68 (198)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccch
Confidence 345788899998888 8899999999999999999998766 566666555444443
No 261
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.42 E-value=3.8e-07 Score=76.87 Aligned_cols=54 Identities=20% Similarity=0.399 Sum_probs=42.9
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
.++.++++.+.+| +.|+||+|+|||||+++|++...+. .+-+.+....+..+++
T Consensus 18 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~ 73 (220)
T cd03245 18 PALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDP 73 (220)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCeEEECCEEhHHCCH
Confidence 4788999998888 8899999999999999999998766 5656665554444444
No 262
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.42 E-value=7e-07 Score=76.79 Aligned_cols=64 Identities=19% Similarity=0.245 Sum_probs=46.1
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc--ccCceEEEEeecCccccchHHHh
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD--LVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~--~~~~~~vi~ttN~~~~ld~al~r 81 (236)
....++.++++.+.+| ++|+||+|+|||||+++|++.+.+. ....|-|.+..+++..++...++
T Consensus 14 ~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 81 (250)
T PRK14247 14 GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR 81 (250)
T ss_pred CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence 3345788999999888 8899999999999999999988631 00145566666655555544333
No 263
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.42 E-value=1.8e-06 Score=83.38 Aligned_cols=44 Identities=11% Similarity=0.205 Sum_probs=33.7
Q ss_pred ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
.+.||++|+.++.+.+.++. |. ..+.|..++.+.....++..+.
T Consensus 162 ~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~ 205 (598)
T PRK09111 162 HVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAA 205 (598)
T ss_pred CeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHH
Confidence 67788888888999888877 43 5688988888777766666543
No 264
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.41 E-value=2.3e-07 Score=89.40 Aligned_cols=58 Identities=21% Similarity=0.287 Sum_probs=51.9
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
.+++++++.+++| ++++||+|||||||++.|++...+. .|.+.+.+.++..+++..+|
T Consensus 355 ~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~ 414 (592)
T PRK10790 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLR 414 (592)
T ss_pred ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHH
Confidence 4788889998888 9999999999999999999999888 78888888888889887776
No 265
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.41 E-value=3.9e-07 Score=86.75 Aligned_cols=117 Identities=19% Similarity=0.198 Sum_probs=68.4
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcccEEecccCCHH
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFE 97 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~ 97 (236)
..++.++++.+.+| +.|+||||+|||||++.|++.+.+. .+.|.+..+ ++.|.||....--.++..
T Consensus 335 ~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~---~G~v~~g~~---------v~igyf~Q~~~~l~~~~t 402 (530)
T COG0488 335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKVGET---------VKIGYFDQHRDELDPDKT 402 (530)
T ss_pred ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC---CceEEeCCc---------eEEEEEEehhhhcCccCc
Confidence 45788899988888 9999999999999999999999877 454444332 112222221111002221
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHHHcCCCCHHHHHHHHcccccccChHHHHHHH
Q 048723 98 AFMVLAKSYLDIESHAFFAEINSLLAETNMASADVAENLMPKSDEEDADSCLKNL 152 (236)
Q Consensus 98 ~~~~i~~~~l~~~~~~~~~~i~~ll~~~gls~a~i~~~l~~~~~~~~~~~~~~~~ 152 (236)
....+...+. ......++.++..++|++.++...+...|+++..++.+..+
T Consensus 403 ~~d~l~~~~~----~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~l 453 (530)
T COG0488 403 VLEELSEGFP----DGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKL 453 (530)
T ss_pred HHHHHHhhCc----cccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHH
Confidence 1111111111 11144567777778888777765555555565555554443
No 266
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.40 E-value=7.3e-07 Score=78.56 Aligned_cols=48 Identities=19% Similarity=0.267 Sum_probs=39.7
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecC
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNY 71 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~ 71 (236)
.++.++++.+.+| ++|+||+|+|||||+++|++.+.+. .|-+.+....
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~ 74 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYA 74 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEE
Confidence 3788999999888 8899999999999999999998766 5555554443
No 267
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=2.6e-06 Score=80.51 Aligned_cols=119 Identities=29% Similarity=0.317 Sum_probs=90.6
Q ss_pred hChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc--------------------------------------
Q 048723 18 EGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-------------------------------------- 59 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-------------------------------------- 59 (236)
..+..+...+..++++++++||||||||+++++++.. +..+
T Consensus 5 ~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d 83 (494)
T COG0464 5 KEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFID 83 (494)
T ss_pred cCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeec
Confidence 4567888899999999999999999999999999997 2211
Q ss_pred --------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723 60 --------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL 107 (236)
Q Consensus 60 --------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l 107 (236)
.+.++++..+|.+..+|+++++++|++..+.+..|+...+..+...+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~ 163 (494)
T COG0464 84 EIDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHT 163 (494)
T ss_pred hhhhcccCccccccchhhHHHHHHHHhcccccCCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHHHH
Confidence 113667778999999999999999999999999999999888887765
Q ss_pred cccchhhHHHHHHHHH-cCCCCHHHHHHHHc
Q 048723 108 DIESHAFFAEINSLLA-ETNMASADVAENLM 137 (236)
Q Consensus 108 ~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~ 137 (236)
.............++. +.+++++++...+.
T Consensus 164 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~ 194 (494)
T COG0464 164 RLMFLGPPGTGKTLAARTVGKSGADLGALAK 194 (494)
T ss_pred hcCCCcccccHHHHHHhcCCccHHHHHHHHH
Confidence 4332221222333333 66788877765553
No 268
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.40 E-value=1.5e-06 Score=73.53 Aligned_cols=45 Identities=24% Similarity=0.338 Sum_probs=38.5
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEe
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFT 68 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~t 68 (236)
.++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .|.|.+.
T Consensus 22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~ 68 (224)
T TIGR02324 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD---SGRILVR 68 (224)
T ss_pred EEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEEe
Confidence 4789999999988 8899999999999999999998776 5555554
No 269
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.40 E-value=7.6e-07 Score=76.61 Aligned_cols=58 Identities=26% Similarity=0.393 Sum_probs=43.6
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhc--CCcccCceEEEEeecCccccchHHH
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFL--NYDLVGEKGIVFTTNYVDKLDPALI 80 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l--~~~~~~~~~vi~ttN~~~~ld~al~ 80 (236)
..++.++++.+.+| +.|+||+|+|||||+++|++.. .+. .|-+.+....+..+++..+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~ 81 (252)
T CHL00131 20 NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKIL---EGDILFKGESILDLEPEER 81 (252)
T ss_pred EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCC---CceEEECCEEcccCChhhh
Confidence 45788999999988 8899999999999999999973 334 4555665555555555433
No 270
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.40 E-value=1.3e-06 Score=72.21 Aligned_cols=80 Identities=15% Similarity=0.242 Sum_probs=58.8
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcccEEecccCCHHH
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEA 98 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~ 98 (236)
...+.++|...+| +.++|.+|||||||++.|++...+. .+-+.+......-=|...+.. ++-+++.-+..++.-
T Consensus 27 ~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PT---sG~il~n~~~L~~~Dy~~R~k-~IRMiFQDpnts~NP 102 (267)
T COG4167 27 EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGEILINDHPLHFGDYSFRSK-RIRMIFQDPNTSLNP 102 (267)
T ss_pred hcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCC---CceEEECCccccccchHhhhh-heeeeecCCccccCh
Confidence 3455678888888 8899999999999999999999988 788888877776667665542 564555555555555
Q ss_pred HHHHHH
Q 048723 99 FMVLAK 104 (236)
Q Consensus 99 ~~~i~~ 104 (236)
|..|-.
T Consensus 103 Rl~iGq 108 (267)
T COG4167 103 RLRIGQ 108 (267)
T ss_pred hhhhhh
Confidence 554433
No 271
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.40 E-value=7.1e-07 Score=76.29 Aligned_cols=52 Identities=19% Similarity=0.377 Sum_probs=42.0
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcc
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVD 73 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~ 73 (236)
+..++.++++.+.+| +.|+||||+|||||+++|++.+.+. .|-|.+...++.
T Consensus 13 ~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~ 66 (240)
T PRK09493 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVN 66 (240)
T ss_pred CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECC
Confidence 345788999998888 8899999999999999999998766 566666554443
No 272
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.40 E-value=1.9e-06 Score=80.13 Aligned_cols=27 Identities=37% Similarity=0.695 Sum_probs=23.9
Q ss_pred CCcceEEECCCCCChHHHHHHHHhhcC
Q 048723 30 WKRGYLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 30 ~~rg~lL~GPpGtGKTtlakaia~~l~ 56 (236)
.++.++|+||||||||++++.||..+.
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 355699999999999999999998874
No 273
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.40 E-value=3.1e-07 Score=79.43 Aligned_cols=52 Identities=21% Similarity=0.288 Sum_probs=41.8
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV 72 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~ 72 (236)
....++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .+-|.+....+
T Consensus 16 ~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~ 69 (257)
T PRK10619 16 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTI 69 (257)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEc
Confidence 3445788999999988 7899999999999999999998766 56666655433
No 274
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.40 E-value=5.1e-07 Score=79.30 Aligned_cols=58 Identities=26% Similarity=0.299 Sum_probs=47.3
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
+.+++++++.+.+| +.|+||+|+|||||+++|++.+. + .|-|.+...++..++...+|
T Consensus 17 ~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~---~G~I~i~g~~i~~~~~~~lr 76 (275)
T cd03289 17 NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGDIQIDGVSWNSVPLQKWR 76 (275)
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEhhhCCHHHHh
Confidence 34789999999999 89999999999999999999987 5 46666766666667665554
No 275
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.39 E-value=1.1e-06 Score=75.61 Aligned_cols=52 Identities=21% Similarity=0.321 Sum_probs=41.7
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV 72 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~ 72 (236)
.+..++.++++.+.+| ++|+||||+|||||+++|++.+.+. .+.|.+....+
T Consensus 14 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~ 67 (250)
T PRK11264 14 HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITI 67 (250)
T ss_pred CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEc
Confidence 3445789999999988 8899999999999999999998766 56665554433
No 276
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.39 E-value=4.4e-06 Score=81.00 Aligned_cols=28 Identities=50% Similarity=0.748 Sum_probs=25.1
Q ss_pred CcceEEECCCCCChHHHHHHHHhhcCCc
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
++.++|+|||||||||++++++..++..
T Consensus 37 ~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 37 KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 3469999999999999999999999765
No 277
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=2.4e-06 Score=81.35 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=33.9
Q ss_pred ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
...+|++|+++..++++++. |- ..+.|..++.+.....+...+.
T Consensus 147 ~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~ 190 (535)
T PRK08451 147 YVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILE 190 (535)
T ss_pred ceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHH
Confidence 57788888889999999988 53 6788988888777666665544
No 278
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.38 E-value=6.4e-07 Score=77.44 Aligned_cols=61 Identities=23% Similarity=0.265 Sum_probs=47.4
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
....++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .|-|.+...++..+++..++
T Consensus 12 ~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~ 74 (256)
T TIGR03873 12 GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARA 74 (256)
T ss_pred CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHh
Confidence 3445788999999888 8899999999999999999998776 56666666555555554443
No 279
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.38 E-value=3.4e-07 Score=76.39 Aligned_cols=55 Identities=18% Similarity=0.334 Sum_probs=43.4
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcccc
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKL 75 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~l 75 (236)
....++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .+.|.+..+.....
T Consensus 11 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~ 67 (201)
T cd03231 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQ 67 (201)
T ss_pred CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccc
Confidence 3445788999999888 8899999999999999999998766 56666655544433
No 280
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.38 E-value=6.1e-07 Score=76.48 Aligned_cols=59 Identities=24% Similarity=0.329 Sum_probs=46.1
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
..++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .|-+.+...++...++..++
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~ 75 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAWLR 75 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHHHh
Confidence 34788999999988 8899999999999999999998776 56666666555555544333
No 281
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.38 E-value=2.2e-06 Score=76.06 Aligned_cols=107 Identities=16% Similarity=0.177 Sum_probs=68.9
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC-c-ccCceEEEEeecCccccchHHHh--cC-CcccEEeccc
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY-D-LVGEKGIVFTTNYVDKLDPALIR--RG-RMDKRIEMSY 93 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~-~-~~~~~~vi~ttN~~~~ld~al~r--~g-R~d~~i~~~~ 93 (236)
..+++++|.+.+| +.|+|.+|||||+++++|.+.+.. + ..-.+-+++.+.++-.++...++ +| ++.++++-+.
T Consensus 19 ~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~ 98 (316)
T COG0444 19 KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPM 98 (316)
T ss_pred EEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCch
Confidence 4788999999999 889999999999999999999973 2 12245778888888888876432 22 3434443322
Q ss_pred ----CCH---HHHHHHHHHhhcc-cchhhHHHHHHHHHcCCC
Q 048723 94 ----CCF---EAFMVLAKSYLDI-ESHAFFAEINSLLAETNM 127 (236)
Q Consensus 94 ----p~~---~~~~~i~~~~l~~-~~~~~~~~i~~ll~~~gl 127 (236)
|.. .+..+.++.|... ........+..+++..|+
T Consensus 99 ~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi 140 (316)
T COG0444 99 TSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGI 140 (316)
T ss_pred hhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCC
Confidence 332 4444555555443 233334455555555544
No 282
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.38 E-value=1.8e-07 Score=76.60 Aligned_cols=52 Identities=25% Similarity=0.360 Sum_probs=41.4
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcccc
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKL 75 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~l 75 (236)
.++.++++.+.+| +.|+||+|+|||||+++|++...+. .+-+.+....+..+
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~ 69 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVPVSDL 69 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCEEHHHH
Confidence 4788899999888 8899999999999999999998766 55566655444333
No 283
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.38 E-value=2.8e-07 Score=75.12 Aligned_cols=52 Identities=29% Similarity=0.417 Sum_probs=41.7
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcccc
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKL 75 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~l 75 (236)
.++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .+-+.+........
T Consensus 14 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~ 67 (173)
T cd03230 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKE 67 (173)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccc
Confidence 4788899998888 8899999999999999999998766 56666655444433
No 284
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.37 E-value=1.1e-06 Score=86.87 Aligned_cols=45 Identities=22% Similarity=0.371 Sum_probs=37.3
Q ss_pred cCceEEEEeecCcc-----ccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723 60 VGEKGIVFTTNYVD-----KLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL 107 (236)
Q Consensus 60 ~~~~~vi~ttN~~~-----~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l 107 (236)
.+...+|++||..+ ..|+++.| ||+ .|.++.|+.+++..|++.+.
T Consensus 313 ~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 313 SGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLK 362 (758)
T ss_pred CCCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHH
Confidence 44788999998764 57999999 995 79999999999999988653
No 285
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.37 E-value=3e-07 Score=88.43 Aligned_cols=59 Identities=27% Similarity=0.467 Sum_probs=50.8
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
+..+++++++.+++| +.++||+|||||||++.|++.. +. .|-|.+.+.++..+++.-+|
T Consensus 362 ~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr 422 (588)
T PRK11174 362 GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWR 422 (588)
T ss_pred CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHH
Confidence 345788899998888 9999999999999999999999 66 67777788888899887776
No 286
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.37 E-value=8.3e-07 Score=88.99 Aligned_cols=44 Identities=23% Similarity=0.279 Sum_probs=35.1
Q ss_pred cCceEEEEeecCc-----cccchHHHhcCCcccEEecccCCHHHHHHHHHHh
Q 048723 60 VGEKGIVFTTNYV-----DKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSY 106 (236)
Q Consensus 60 ~~~~~vi~ttN~~-----~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~ 106 (236)
.|...+|++|+.. -.+|++|+| || ..|.+..|+.+....|++.+
T Consensus 314 ~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf-~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 314 RGELRTIAATTWAEYKKYFEKDPALTR--RF-QVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred CCCeEEEEecCHHHHhhhhhccHHHHH--hC-eEEEeCCCCHHHHHHHHHHH
Confidence 3467888888764 348999999 99 58999999999998886544
No 287
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.37 E-value=7.8e-07 Score=75.89 Aligned_cols=55 Identities=20% Similarity=0.303 Sum_probs=43.9
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA 78 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a 78 (236)
.++.++++.+++| +.|+||+|+|||||+++|++.+.+. .|-|.+....+..+++.
T Consensus 17 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~ 73 (238)
T cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT---SGEILLDGVDIRDLNLR 73 (238)
T ss_pred cceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCC---CCEEEECCEehhhcCHH
Confidence 4788899998888 8899999999999999999998766 56666665555444443
No 288
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.37 E-value=4.9e-07 Score=88.75 Aligned_cols=60 Identities=20% Similarity=0.331 Sum_probs=55.7
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhc
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRR 82 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~ 82 (236)
+.+++++++.++.| +.++|++|||||||+|.|.+...+. .|-+.+...+...+|+.-+|+
T Consensus 486 ~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~ 547 (709)
T COG2274 486 PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRR 547 (709)
T ss_pred cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHh
Confidence 46899999999999 9999999999999999999999988 899999999999999988883
No 289
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.37 E-value=4.2e-07 Score=75.84 Aligned_cols=59 Identities=31% Similarity=0.461 Sum_probs=46.4
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhc--CCcccCceEEEEeecCccccchHHH
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFL--NYDLVGEKGIVFTTNYVDKLDPALI 80 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l--~~~~~~~~~vi~ttN~~~~ld~al~ 80 (236)
+..+++++++.+.+| +.|+||+|+|||||+++|++.. .+. .+-|.+...++..+++..+
T Consensus 12 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~---~G~i~~~g~~~~~~~~~~~ 74 (200)
T cd03217 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT---EGEILFKGEDITDLPPEER 74 (200)
T ss_pred CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCC---ccEEEECCEECCcCCHHHH
Confidence 345788999999888 8899999999999999999985 344 5666676666776666543
No 290
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.36 E-value=1.3e-06 Score=76.91 Aligned_cols=50 Identities=24% Similarity=0.358 Sum_probs=42.6
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV 72 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~ 72 (236)
..+++++++.+.+| +.|+||+|+|||||+++|++.+.+. .|-|.+.+.+.
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~ 70 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPI 70 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEEC
Confidence 45889999999998 8899999999999999999998776 66677766554
No 291
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.36 E-value=3.3e-06 Score=69.55 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=32.5
Q ss_pred ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHh
Q 048723 62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSY 106 (236)
Q Consensus 62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~ 106 (236)
...+|+++|.+..+++++.+ |. ..+.+..|+.++...++...
T Consensus 126 ~~~~il~~~~~~~l~~~i~s--r~-~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 126 NTLFILITPSPEKLLPTIRS--RC-QVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred CeEEEEEECChHhChHHHHh--hc-EEeeCCCCCHHHHHHHHHHc
Confidence 57777888888899999888 55 57888888888777666654
No 292
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.36 E-value=5.8e-07 Score=74.87 Aligned_cols=52 Identities=25% Similarity=0.423 Sum_probs=42.5
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcc
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVD 73 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~ 73 (236)
...+++++++.+.+| +.|+||+|+|||||+++|++...+. .|-+.+...++.
T Consensus 13 ~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~ 66 (200)
T PRK13540 13 DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE---KGEILFERQSIK 66 (200)
T ss_pred CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeeEEECCCccc
Confidence 345789999999888 8899999999999999999998776 666666554443
No 293
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.36 E-value=6.2e-07 Score=76.34 Aligned_cols=59 Identities=19% Similarity=0.370 Sum_probs=45.2
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
..++.++++.+.+| ++|+||||+|||||+++|++.+.+. .|-|.+....+...+...++
T Consensus 14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~v~~~g~~~~~~~~~~~~ 74 (236)
T cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS---SGSILIDGQDIREVTLDSLR 74 (236)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEhhhCCHHHHH
Confidence 34788889998888 8899999999999999999998766 56666655555555544333
No 294
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.35 E-value=7e-07 Score=75.21 Aligned_cols=52 Identities=19% Similarity=0.326 Sum_probs=42.2
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV 72 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~ 72 (236)
....++.++++.+.+| +.|+||||+|||||+++|++...+. .|-|.+....+
T Consensus 22 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~i 75 (214)
T PRK13543 22 NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTA 75 (214)
T ss_pred CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CeeEEECCEEc
Confidence 3445789999999888 8899999999999999999998776 56666655443
No 295
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.35 E-value=6.3e-07 Score=87.90 Aligned_cols=59 Identities=20% Similarity=0.374 Sum_probs=53.4
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
+.+++++++.+++| +.++||+|||||||++.|++...+. +|-|.+.+.++..+++.-+|
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr 526 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVR 526 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHH
Confidence 35788999999888 9999999999999999999999888 88899999899999988777
No 296
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.35 E-value=8.4e-07 Score=75.89 Aligned_cols=55 Identities=22% Similarity=0.330 Sum_probs=42.8
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD 76 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld 76 (236)
...++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .+-+.+...++...+
T Consensus 12 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~ 68 (237)
T TIGR00968 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVH 68 (237)
T ss_pred CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCC
Confidence 445788999999888 8899999999999999999988766 555555544444443
No 297
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.35 E-value=1.1e-06 Score=76.95 Aligned_cols=53 Identities=15% Similarity=0.197 Sum_probs=43.5
Q ss_pred HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .|-|.+.+.++...+.
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~ 76 (277)
T PRK13642 22 QLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENV 76 (277)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCH
Confidence 789999999998 8999999999999999999999877 6666666655544443
No 298
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.35 E-value=3.6e-07 Score=86.86 Aligned_cols=57 Identities=21% Similarity=0.348 Sum_probs=49.0
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
.+++++++.+++| +.++||+|||||||++.|++...+. .|-+.+.+.++..+ ..-+|
T Consensus 349 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~i~g~~i~~~-~~~lr 407 (529)
T TIGR02868 349 PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL---QGEVTLDGVSVSSL-QDELR 407 (529)
T ss_pred ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhH-HHHHH
Confidence 4788999999888 9999999999999999999999888 78888888777777 55555
No 299
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.35 E-value=3.7e-06 Score=74.98 Aligned_cols=44 Identities=14% Similarity=0.094 Sum_probs=30.4
Q ss_pred ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
...+|++++.+..+.+.+.+ |. ..+.+..|+.+.+..++..++.
T Consensus 155 ~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~ 198 (337)
T PRK12402 155 TCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAE 198 (337)
T ss_pred CCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHH
Confidence 35566677666777777766 54 5678888888877777776544
No 300
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.35 E-value=6.8e-07 Score=87.93 Aligned_cols=59 Identities=20% Similarity=0.314 Sum_probs=52.4
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
+.+++++++.+++| +.++||+|||||||++.|++...+. .|-|.+...++..+++.-+|
T Consensus 487 ~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr 547 (708)
T TIGR01193 487 SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLR 547 (708)
T ss_pred CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHH
Confidence 45788889988888 9999999999999999999999888 78888888888889987777
No 301
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.34 E-value=5.7e-07 Score=78.25 Aligned_cols=61 Identities=13% Similarity=0.256 Sum_probs=46.7
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
....++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .|-+.+....+...++..++
T Consensus 18 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~ 80 (265)
T PRK10253 18 GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVA 80 (265)
T ss_pred CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHh
Confidence 3445788999999999 8899999999999999999998776 56666655555555544433
No 302
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.34 E-value=2.9e-07 Score=87.26 Aligned_cols=60 Identities=22% Similarity=0.238 Sum_probs=47.7
Q ss_pred hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHH
Q 048723 17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPAL 79 (236)
Q Consensus 17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al 79 (236)
|.+..++.+++|.+..| +.|+||+|+|||||+++|++.+.+. .|-|.+....+..+++..
T Consensus 15 ~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~ 76 (510)
T PRK09700 15 FGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKL 76 (510)
T ss_pred cCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHH
Confidence 34445789999999999 8899999999999999999998776 566666665565565543
No 303
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.34 E-value=8.1e-07 Score=77.17 Aligned_cols=42 Identities=26% Similarity=0.248 Sum_probs=34.9
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEE
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIV 66 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi 66 (236)
..+.++++ +.+| +.|+||||+|||||+++|++.+.+. .|.|.
T Consensus 15 ~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~---~G~I~ 58 (255)
T cd03236 15 FKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPN---LGKFD 58 (255)
T ss_pred hhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEe
Confidence 36778874 6667 8899999999999999999999877 56553
No 304
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.34 E-value=6.4e-07 Score=77.38 Aligned_cols=60 Identities=22% Similarity=0.351 Sum_probs=45.6
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHH
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALI 80 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~ 80 (236)
.+..++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .+.+.+....+..+++..+
T Consensus 13 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 74 (255)
T PRK11231 13 GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQL 74 (255)
T ss_pred CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHH
Confidence 3445788999999888 8899999999999999999998766 5656655544444554433
No 305
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.34 E-value=1.7e-06 Score=73.08 Aligned_cols=55 Identities=20% Similarity=0.323 Sum_probs=44.7
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
..++.++++.+.+| ++|+||||+|||||+++|++.+.+. .|-|.+....+..+++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~ 74 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ---EGSLKVLGQELYGASE 74 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEhHhcCH
Confidence 34788999999988 8899999999999999999988766 6667766655555554
No 306
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34 E-value=3.8e-06 Score=78.75 Aligned_cols=44 Identities=9% Similarity=0.114 Sum_probs=33.3
Q ss_pred CceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723 61 GEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL 107 (236)
Q Consensus 61 ~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l 107 (236)
+..++|+++|.+..+.+.++. |. ..+.|..++.++....+....
T Consensus 150 ~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~ 193 (451)
T PRK06305 150 QHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIA 193 (451)
T ss_pred CCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHH
Confidence 367788888888999999888 54 568998888877766655543
No 307
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.34 E-value=9.4e-07 Score=79.51 Aligned_cols=59 Identities=20% Similarity=0.289 Sum_probs=44.9
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcc-cCceEEEEeecCccccchHH
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDL-VGEKGIVFTTNYVDKLDPAL 79 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~-~~~~~vi~ttN~~~~ld~al 79 (236)
.++++++|.+.+| +.|+||||||||||+++|++.+..+. ...|-|.+...++..+++.-
T Consensus 21 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 21 KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 4789999999999 88999999999999999999986311 11466666665666666543
No 308
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.33 E-value=2e-06 Score=73.74 Aligned_cols=60 Identities=23% Similarity=0.285 Sum_probs=46.0
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhc--CCcccCceEEEEeecCccccchHHHh
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFL--NYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l--~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
...++.++++.+.+| +.|+||+|+|||||+++|++.. .+. .|-+.+....+..+++..++
T Consensus 13 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~ 76 (248)
T PRK09580 13 DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLELSPEDRA 76 (248)
T ss_pred CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCC---ceEEEECCCccccCCHHHHh
Confidence 345788999999888 8899999999999999999985 344 56666666666666665443
No 309
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.33 E-value=5.4e-07 Score=77.45 Aligned_cols=61 Identities=18% Similarity=0.130 Sum_probs=43.5
Q ss_pred hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
+.....+.++++.+.+| +.|+||+|+|||||+++|++.+.+.....|-|.+...++...+.
T Consensus 12 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~ 74 (246)
T PRK14269 12 YGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDV 74 (246)
T ss_pred ECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCH
Confidence 33445788999999888 88999999999999999999875210114555555555444443
No 310
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.33 E-value=2.3e-06 Score=72.71 Aligned_cols=81 Identities=22% Similarity=0.217 Sum_probs=50.8
Q ss_pred ceEEECCCCCChHHHHHHHHhhcC---Cc--c------------------------------------------------
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLN---YD--L------------------------------------------------ 59 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~---~~--~------------------------------------------------ 59 (236)
.+.|+||+|+|||.|+++|++... +. +
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~~~ 115 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGKQRT 115 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCchHH
Confidence 389999999999999999998752 22 1
Q ss_pred -------------cCceEEEEeecCccc---cchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccchh
Q 048723 60 -------------VGEKGIVFTTNYVDK---LDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHA 113 (236)
Q Consensus 60 -------------~~~~~vi~ttN~~~~---ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~~ 113 (236)
.+..+|+.+...|.. +++.+..+-.-...+.+..|+.+.+..+++.+.......
T Consensus 116 q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~ 185 (219)
T PF00308_consen 116 QEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE 185 (219)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 334444444344444 567777722335678899999999999998876544433
No 311
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.33 E-value=5.6e-07 Score=78.27 Aligned_cols=57 Identities=19% Similarity=0.330 Sum_probs=44.7
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA 78 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a 78 (236)
+..++.++++.+.+| +.|+||||+|||||+++|++.+.+. .|.|.+.+.++...++.
T Consensus 23 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 81 (265)
T PRK10575 23 GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSK 81 (265)
T ss_pred CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHH
Confidence 345788999999988 8899999999999999999998766 56666665555444443
No 312
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.33 E-value=5.4e-07 Score=85.53 Aligned_cols=60 Identities=28% Similarity=0.352 Sum_probs=47.3
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHH
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALI 80 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~ 80 (236)
....++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .|-|.+....+...++..+
T Consensus 22 ~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 83 (510)
T PRK15439 22 SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKA 83 (510)
T ss_pred CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHH
Confidence 3445789999999998 8899999999999999999998776 6667666655555554433
No 313
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.33 E-value=4.6e-06 Score=73.67 Aligned_cols=74 Identities=26% Similarity=0.295 Sum_probs=53.2
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCCc-----c------------------------------------------------
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNYD-----L------------------------------------------------ 59 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~~-----~------------------------------------------------ 59 (236)
.++|+||||||||++++++++.+..+ +
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~ 119 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQ 119 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHH
Confidence 48999999999999999999875211 0
Q ss_pred ----------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcc
Q 048723 60 ----------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDI 109 (236)
Q Consensus 60 ----------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~ 109 (236)
.....+|+++|....+.+++.+ |. ..+.|..++.++...++..++..
T Consensus 120 ~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~l~~~ei~~~l~~~~~~ 176 (319)
T PRK00440 120 QALRRTMEMYSQNTRFILSCNYSSKIIDPIQS--RC-AVFRFSPLKKEAVAERLRYIAEN 176 (319)
T ss_pred HHHHHHHhcCCCCCeEEEEeCCccccchhHHH--Hh-heeeeCCCCHHHHHHHHHHHHHH
Confidence 1245566777777777777776 55 45788888887777777766543
No 314
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.33 E-value=5e-07 Score=75.56 Aligned_cols=55 Identities=25% Similarity=0.306 Sum_probs=43.7
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA 78 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a 78 (236)
..+.++++.+.+| +.|.||+|+|||||+++|++...+. .+-+.+....+..++..
T Consensus 22 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 78 (207)
T cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE---EGKIEIDGIDISTIPLE 78 (207)
T ss_pred ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEhHHCCHH
Confidence 4788999999888 8899999999999999999998766 56666655555445443
No 315
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=6.4e-07 Score=86.46 Aligned_cols=58 Identities=21% Similarity=0.383 Sum_probs=54.9
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
.++++++|.+++| +.|+||+|+||||++..|-+..++. .|.|...+.++..+++.-+|
T Consensus 482 ~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr 541 (716)
T KOG0058|consen 482 PVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLR 541 (716)
T ss_pred hhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHH
Confidence 4899999999999 9999999999999999999999999 89999999999999998887
No 316
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.33 E-value=5.7e-07 Score=88.49 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=52.5
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
+.+++++++.+++| +.++||+|||||||++.|++.+.+. +|.|.+...+...+++.-+|
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr 552 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLA 552 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHH
Confidence 35788999999888 9999999999999999999999888 78888888888889887776
No 317
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.32 E-value=7.1e-07 Score=76.40 Aligned_cols=51 Identities=20% Similarity=0.286 Sum_probs=41.9
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecC
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNY 71 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~ 71 (236)
....++.++++.+.+| +.|+||+|+|||||+++|++...+. .|-|.+...+
T Consensus 13 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~ 65 (242)
T PRK11124 13 GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNH 65 (242)
T ss_pred CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEe
Confidence 3445788999999888 8899999999999999999998766 5666665543
No 318
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.32 E-value=3.4e-06 Score=75.85 Aligned_cols=31 Identities=42% Similarity=0.699 Sum_probs=27.6
Q ss_pred CCCcceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723 29 AWKRGYLLYGPPGTGKSTMIAAMANFLNYDL 59 (236)
Q Consensus 29 ~~~rg~lL~GPpGtGKTtlakaia~~l~~~~ 59 (236)
-..+|+||.||||||||-||-+||.+|+.++
T Consensus 63 ~aGrgiLi~GppgTGKTAlA~gIa~eLG~dv 93 (450)
T COG1224 63 MAGRGILIVGPPGTGKTALAMGIARELGEDV 93 (450)
T ss_pred ccccEEEEECCCCCcHHHHHHHHHHHhCCCC
Confidence 3468899999999999999999999998554
No 319
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.32 E-value=1.8e-06 Score=83.93 Aligned_cols=44 Identities=20% Similarity=0.303 Sum_probs=37.9
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEE
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVF 67 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ 67 (236)
.++++++|.+.+| +.|+||||||||||+++|++.+.+. .+.+.+
T Consensus 30 ~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~ 75 (623)
T PRK10261 30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQC 75 (623)
T ss_pred eEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEE
Confidence 4788999999999 8899999999999999999998766 455544
No 320
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.32 E-value=1.8e-06 Score=74.84 Aligned_cols=54 Identities=19% Similarity=0.306 Sum_probs=40.0
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC--cccCceEEEEeecCc
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY--DLVGEKGIVFTTNYV 72 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~--~~~~~~~vi~ttN~~ 72 (236)
+..+++++++.+.+| +.|+||||+|||||+++|++.+.+ .....|-|.+....+
T Consensus 25 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~ 82 (260)
T PRK10744 25 KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENI 82 (260)
T ss_pred CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEc
Confidence 345788999999998 889999999999999999998752 101145555554444
No 321
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.32 E-value=1.2e-06 Score=73.29 Aligned_cols=50 Identities=24% Similarity=0.443 Sum_probs=40.1
Q ss_pred hhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 25 KIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 25 ~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
++++.+.+| +.|+||+|+|||||+++|++.+.+. .|-+.+...++...++
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~ 67 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPP 67 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCH
Confidence 677888888 8899999999999999999998776 6666666655554443
No 322
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.31 E-value=9.9e-07 Score=84.88 Aligned_cols=58 Identities=21% Similarity=0.308 Sum_probs=51.1
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
.+++++++.+++| +.|+||+|+|||||++.|++...+. .|-|.+.+.+...+++.-+|
T Consensus 354 ~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r 413 (574)
T PRK11160 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALR 413 (574)
T ss_pred cceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHH
Confidence 4788899988888 8999999999999999999999888 78788888888888887776
No 323
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.31 E-value=2.6e-06 Score=73.36 Aligned_cols=55 Identities=18% Similarity=0.316 Sum_probs=40.8
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcc--cCceEEEEeecCc
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDL--VGEKGIVFTTNYV 72 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~--~~~~~vi~ttN~~ 72 (236)
....++.++++.+.+| +.|+||||+|||||+++|++.+.+.. ...|-|.+....+
T Consensus 15 ~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i 73 (253)
T PRK14267 15 GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNI 73 (253)
T ss_pred CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEc
Confidence 3445789999999988 88999999999999999999986520 0135555554443
No 324
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.31 E-value=2.8e-06 Score=76.96 Aligned_cols=30 Identities=43% Similarity=0.677 Sum_probs=25.3
Q ss_pred CCcceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723 30 WKRGYLLYGPPGTGKSTMIAAMANFLNYDL 59 (236)
Q Consensus 30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~~ 59 (236)
-.|++||.||||||||.|+-+||.+|+.++
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~~ 78 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKELGEDV 78 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHhCCCC
Confidence 367899999999999999999999998665
No 325
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.31 E-value=9.3e-06 Score=69.55 Aligned_cols=95 Identities=22% Similarity=0.343 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------
Q 048723 4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------ 59 (236)
Q Consensus 4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------ 59 (236)
.+|+.+.++...|..+. +...+||+|..|||||+++|++-++..-..
T Consensus 67 ~qk~~L~~NT~~F~~G~---------pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~Lp~l~~~Lr~~ 137 (287)
T COG2607 67 RQKEALVRNTEQFAEGL---------PANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATLPDLVELLRAR 137 (287)
T ss_pred HHHHHHHHHHHHHHcCC---------cccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhHHHHHHHHhcC
Confidence 35666666666665433 345599999999999999999999875443
Q ss_pred ----------------------------------cCceEEEEeecCccccchHHHhc--------------------CCc
Q 048723 60 ----------------------------------VGEKGIVFTTNYVDKLDPALIRR--------------------GRM 85 (236)
Q Consensus 60 ----------------------------------~~~~~vi~ttN~~~~ld~al~r~--------------------gR~ 85 (236)
..+|+|.+|+|+-+.++..+... -||
T Consensus 138 ~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRF 217 (287)
T COG2607 138 PEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRF 217 (287)
T ss_pred CceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhc
Confidence 34899999999998888644431 155
Q ss_pred ccEEecccCCHHHHHHHHHHhh
Q 048723 86 DKRIEMSYCCFEAFMVLAKSYL 107 (236)
Q Consensus 86 d~~i~~~~p~~~~~~~i~~~~l 107 (236)
...+.|..|+.+....++..|.
T Consensus 218 GLwL~F~~~~Q~~YL~~V~~~a 239 (287)
T COG2607 218 GLWLSFYPCDQDEYLKIVDHYA 239 (287)
T ss_pred ceeecccCCCHHHHHHHHHHHH
Confidence 5556666666666655555553
No 326
>PRK05642 DNA replication initiation factor; Validated
Probab=98.31 E-value=3.1e-06 Score=72.59 Aligned_cols=75 Identities=16% Similarity=0.120 Sum_probs=50.2
Q ss_pred cceEEECCCCCChHHHHHHHHhhcC---Ccc-------------------------------------------------
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLN---YDL------------------------------------------------- 59 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~---~~~------------------------------------------------- 59 (236)
+.++|+||+|||||.|++++++.+. ..+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~ 125 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDLDVIAGKADWEEALFHLFNR 125 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEechhhhcCChHHHHHHHHHHHH
Confidence 5589999999999999999987542 111
Q ss_pred ---cCceEEEEeecCccc---cchHHHhcCCcccEEecccCCHHHHHHHHHHh
Q 048723 60 ---VGEKGIVFTTNYVDK---LDPALIRRGRMDKRIEMSYCCFEAFMVLAKSY 106 (236)
Q Consensus 60 ---~~~~~vi~ttN~~~~---ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~ 106 (236)
.+..+++.++..+.. +.|.++.+......+.+..|+.+.+..+++..
T Consensus 126 ~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 126 LRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred HHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 223444444434433 35777773223567788888998888887743
No 327
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.31 E-value=1.7e-05 Score=79.59 Aligned_cols=74 Identities=24% Similarity=0.295 Sum_probs=57.4
Q ss_pred CCCcceEEECCCCCChHHHHHHHHhhcC----------Ccc---------------------------------------
Q 048723 29 AWKRGYLLYGPPGTGKSTMIAAMANFLN----------YDL--------------------------------------- 59 (236)
Q Consensus 29 ~~~rg~lL~GPpGtGKTtlakaia~~l~----------~~~--------------------------------------- 59 (236)
..+++++|+||||||||++++.||..+. ..+
T Consensus 198 ~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfi 277 (821)
T CHL00095 198 RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVI 277 (821)
T ss_pred cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEE
Confidence 3456799999999999999999999863 222
Q ss_pred ---------------------------cCceEEEEeecCcc-----ccchHHHhcCCcccEEecccCCHHHHHHHHHH
Q 048723 60 ---------------------------VGEKGIVFTTNYVD-----KLDPALIRRGRMDKRIEMSYCCFEAFMVLAKS 105 (236)
Q Consensus 60 ---------------------------~~~~~vi~ttN~~~-----~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~ 105 (236)
.|...+|++|+..+ ..|+++.+ ||. .|.+..|+.++...|++.
T Consensus 278 DEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 278 DEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFG 352 (821)
T ss_pred ecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHH
Confidence 34678888888654 47899998 894 578888998887777664
No 328
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.30 E-value=6.7e-07 Score=77.71 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=39.2
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEE
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVF 67 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ 67 (236)
....++.++++.+.+| ++|+||+|+|||||+++|++.+.+. .|-|.+
T Consensus 23 ~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~ 71 (257)
T PRK11247 23 GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLA 71 (257)
T ss_pred CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEE
Confidence 3445788999999888 8899999999999999999998776 555554
No 329
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.30 E-value=1.4e-05 Score=72.20 Aligned_cols=45 Identities=16% Similarity=0.201 Sum_probs=34.5
Q ss_pred ceEEEEeecCcc---ccchHHHhcCCcc-cEEecccCCHHHHHHHHHHhhc
Q 048723 62 EKGIVFTTNYVD---KLDPALIRRGRMD-KRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 62 ~~~vi~ttN~~~---~ld~al~r~gR~d-~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
.+.+|+.+|.++ .+++.+.+ |+. ..+.|+.++.+++..+++..+.
T Consensus 165 ~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 165 KVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred eEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 467788888776 47777766 553 6788999999999999887764
No 330
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.30 E-value=4.5e-07 Score=74.37 Aligned_cols=56 Identities=23% Similarity=0.430 Sum_probs=45.1
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA 78 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a 78 (236)
..++.++++.+.+| ++|.||+|+|||||+++|++.+.+. .+-|.+...++..+++.
T Consensus 12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~ 69 (180)
T cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPK 69 (180)
T ss_pred eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCcCCHH
Confidence 34788889988888 8899999999999999999998776 67677666555555554
No 331
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.30 E-value=1e-06 Score=73.04 Aligned_cols=49 Identities=14% Similarity=0.331 Sum_probs=39.0
Q ss_pred HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccc
Q 048723 22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDK 74 (236)
Q Consensus 22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ 74 (236)
++. +++.+.+| ++|+||||+|||||+++|++.+.+. .|-+.+...++..
T Consensus 16 l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~ 66 (195)
T PRK13541 16 LFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPS---SGNIYYKNCNINN 66 (195)
T ss_pred EEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCcccCh
Confidence 444 78888888 8899999999999999999998777 6666666655433
No 332
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.30 E-value=8.8e-07 Score=86.26 Aligned_cols=39 Identities=33% Similarity=0.537 Sum_probs=34.4
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
..++.++++.+.+| +.|+||||||||||+++|++.+.+.
T Consensus 332 ~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~ 372 (635)
T PRK11147 332 KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD 372 (635)
T ss_pred eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 34788888888888 8899999999999999999988665
No 333
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=7.7e-06 Score=79.42 Aligned_cols=28 Identities=39% Similarity=0.612 Sum_probs=24.7
Q ss_pred CCcceEEECCCCCChHHHHHHHHhhcCC
Q 048723 30 WKRGYLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 30 ~~rg~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
....+||+||+|+||||+++++|+.+..
T Consensus 37 l~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 37 IAPAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHhcC
Confidence 3456999999999999999999999864
No 334
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.29 E-value=2.3e-06 Score=81.53 Aligned_cols=53 Identities=26% Similarity=0.344 Sum_probs=42.0
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
.+++++++.+.+| +.|+||+|||||||+++|++.+. + .|-|.+.+..+..+++
T Consensus 300 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~---~G~i~~~g~~i~~~~~ 354 (529)
T PRK15134 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-S---QGEIWFDGQPLHNLNR 354 (529)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-C---CcEEEECCEEccccch
Confidence 4788999999999 88999999999999999999874 4 4566665555544443
No 335
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.29 E-value=1.5e-06 Score=75.64 Aligned_cols=54 Identities=17% Similarity=0.165 Sum_probs=40.3
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcc--cCceEEEEeecCc
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDL--VGEKGIVFTTNYV 72 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~--~~~~~vi~ttN~~ 72 (236)
...++.++++.+.+| +.|+||||+|||||+++|++.+.++. ...|-|.+....+
T Consensus 31 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i 88 (267)
T PRK14235 31 EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDI 88 (267)
T ss_pred CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEC
Confidence 345788899999888 88999999999999999999986410 0145555555444
No 336
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=3e-06 Score=78.13 Aligned_cols=28 Identities=32% Similarity=0.520 Sum_probs=24.5
Q ss_pred CCcceEEECCCCCChHHHHHHHHhhcCC
Q 048723 30 WKRGYLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 30 ~~rg~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
++..++|+||||+||||+++++|+.+..
T Consensus 37 ~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 37 VGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4556999999999999999999998843
No 337
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.28 E-value=1.3e-06 Score=83.70 Aligned_cols=58 Identities=24% Similarity=0.347 Sum_probs=50.5
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
.+++++++.+++| ++++||+|+|||||++.|++...+. .|.|.+.+.+...++...+|
T Consensus 346 ~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~---~G~I~i~g~~i~~~~~~~~~ 405 (571)
T TIGR02203 346 PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLR 405 (571)
T ss_pred ccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEeHHhcCHHHHH
Confidence 3688889988888 8999999999999999999999888 78888888888888876655
No 338
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.28 E-value=1.9e-06 Score=78.21 Aligned_cols=45 Identities=24% Similarity=0.373 Sum_probs=36.8
Q ss_pred hhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723 25 KIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV 72 (236)
Q Consensus 25 ~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~ 72 (236)
++++.+..| ++|+||||+|||||+++|++.+.+. .|-+.+....+
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i 61 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTL 61 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEC
Confidence 677888877 8899999999999999999998876 56666655443
No 339
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=5.8e-06 Score=79.87 Aligned_cols=43 Identities=12% Similarity=0.216 Sum_probs=30.3
Q ss_pred ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723 62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL 107 (236)
Q Consensus 62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l 107 (236)
..+||+.++..+.+.+.+.. |. ..+.|..++......++....
T Consensus 150 ~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a 192 (585)
T PRK14950 150 HAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIA 192 (585)
T ss_pred CeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHH
Confidence 56777778888888887776 44 457888787776666655543
No 340
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.27 E-value=1.9e-06 Score=75.17 Aligned_cols=38 Identities=29% Similarity=0.396 Sum_probs=33.7
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~ 56 (236)
...+++++++.+.+| +.|+||||||||||+++|++...
T Consensus 25 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 64 (269)
T PRK14259 25 TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMND 64 (269)
T ss_pred CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 345788999999888 88999999999999999999875
No 341
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.27 E-value=1.6e-06 Score=85.22 Aligned_cols=58 Identities=21% Similarity=0.375 Sum_probs=51.6
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
.+++++++.+++| +.++||+|||||||++.|++...+. .|.|.+.+.+...+++.-+|
T Consensus 479 ~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr 538 (694)
T TIGR03375 479 PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLR 538 (694)
T ss_pred cceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHH
Confidence 4788899988888 9999999999999999999999888 78888888888888887776
No 342
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.26 E-value=1.2e-06 Score=83.23 Aligned_cols=58 Identities=24% Similarity=0.325 Sum_probs=51.5
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
.+++++++.+++| +.++||+|||||||++.|++...+. .|.+.+...+...+++.-+|
T Consensus 336 ~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~I~~~g~~i~~~~~~~lr 395 (529)
T TIGR02857 336 PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSWR 395 (529)
T ss_pred ccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEehhhCCHHHHH
Confidence 4788899999888 8999999999999999999999888 78888888888888876666
No 343
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=6.5e-06 Score=79.82 Aligned_cols=43 Identities=12% Similarity=0.189 Sum_probs=30.9
Q ss_pred ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723 62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL 107 (236)
Q Consensus 62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l 107 (236)
..++|+.++....+.+.+.++ - ..+.|..++.+.....+...+
T Consensus 157 ~tv~IL~t~~~~kLl~TI~SR--c-~~vef~~l~~~ei~~~L~~i~ 199 (620)
T PRK14954 157 HAIFIFATTELHKIPATIASR--C-QRFNFKRIPLDEIQSQLQMIC 199 (620)
T ss_pred CeEEEEEeCChhhhhHHHHhh--c-eEEecCCCCHHHHHHHHHHHH
Confidence 566777777788888888873 3 568888888777665555443
No 344
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.26 E-value=7.8e-07 Score=86.71 Aligned_cols=39 Identities=31% Similarity=0.270 Sum_probs=34.5
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
..++.++++.+.+| +.|+||||||||||+++|++.+.+.
T Consensus 325 ~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~ 365 (638)
T PRK10636 325 RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV 365 (638)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 34778888888888 8899999999999999999998766
No 345
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.26 E-value=1e-06 Score=74.23 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=44.9
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHH
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALI 80 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~ 80 (236)
.++.++++.+++| +.|+||+|+|||||+++|++...+. .+-|.+....+..++..-+
T Consensus 18 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 76 (221)
T cd03244 18 PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELS---SGSILIDGVDISKIGLHDL 76 (221)
T ss_pred ccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhHhCCHHHH
Confidence 4789999999998 8899999999999999999988766 5666666555555554333
No 346
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.25 E-value=3.1e-06 Score=72.87 Aligned_cols=55 Identities=20% Similarity=0.284 Sum_probs=40.2
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC-cc-cCceEEEEeecCc
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY-DL-VGEKGIVFTTNYV 72 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~-~~-~~~~~vi~ttN~~ 72 (236)
....++.++++.+.+| ++|+||+|+|||||+++|++.... +. ...|-|.+....+
T Consensus 17 ~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 75 (253)
T PRK14242 17 GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENI 75 (253)
T ss_pred CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEc
Confidence 3345788999999988 889999999999999999998641 10 0145555555444
No 347
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.25 E-value=2.2e-06 Score=73.92 Aligned_cols=56 Identities=29% Similarity=0.437 Sum_probs=43.1
Q ss_pred HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
.+.++++.+.+| +.|+||||+|||||+++|++.+. + .|.|.+...++...++..++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~---~G~i~~~g~~i~~~~~~~~~ 68 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G---SGSIQFAGQPLEAWSAAELA 68 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C---CeEEEECCEecCcCCHHHHh
Confidence 578889999888 88999999999999999999873 3 45666666555555554443
No 348
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.25 E-value=1e-06 Score=83.34 Aligned_cols=58 Identities=24% Similarity=0.296 Sum_probs=45.1
Q ss_pred hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
|.+..++.++++.+..| +.|+||+|+|||||+++|++.+.+. .|.|.+....+...++
T Consensus 14 ~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~ 73 (501)
T PRK10762 14 FPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGP 73 (501)
T ss_pred eCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCH
Confidence 34445788999999888 8899999999999999999998777 6666665544444433
No 349
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.25 E-value=1.5e-06 Score=83.68 Aligned_cols=59 Identities=22% Similarity=0.370 Sum_probs=51.7
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
+.+++++++.+++| ++++||+|||||||++.|++...+. .|.+.+...++..+++..+|
T Consensus 348 ~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~---~G~I~i~g~~i~~~~~~~~r 408 (588)
T PRK13657 348 RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ---SGRILIDGTDIRTVTRASLR 408 (588)
T ss_pred CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEhhhCCHHHHH
Confidence 34788888888888 9999999999999999999999888 78888888888888877666
No 350
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=7.1e-06 Score=73.87 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=34.3
Q ss_pred CceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHh
Q 048723 61 GEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSY 106 (236)
Q Consensus 61 ~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~ 106 (236)
+..++|++|++++.+.|.++. |- ..+.|..|+.+.....+...
T Consensus 135 ~~~~fiL~t~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 135 GDTVLLLISHQPSRLLPTIKS--RC-QQQACPLPSNEESLQWLQQA 177 (328)
T ss_pred CCeEEEEEECChhhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHh
Confidence 478999999999999999988 44 55888888887776665544
No 351
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.25 E-value=2.3e-06 Score=73.77 Aligned_cols=40 Identities=23% Similarity=0.328 Sum_probs=35.3
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
....++.++++.+.+| +.|+||+|+|||||+++|++.+.+
T Consensus 18 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 59 (254)
T PRK14273 18 TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDL 59 (254)
T ss_pred CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccC
Confidence 3445789999999988 889999999999999999999865
No 352
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.24 E-value=8.7e-07 Score=74.27 Aligned_cols=50 Identities=24% Similarity=0.404 Sum_probs=40.5
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecC
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNY 71 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~ 71 (236)
...++.++++.+.+| +.|+||+|+|||||+++|++...+. .|-|.+....
T Consensus 14 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~ 65 (207)
T PRK13539 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA---AGTIKLDGGD 65 (207)
T ss_pred CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEe
Confidence 345788899999888 8899999999999999999998766 5656555443
No 353
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.24 E-value=4.7e-06 Score=71.59 Aligned_cols=38 Identities=29% Similarity=0.451 Sum_probs=34.0
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
...+.++++.+.+| +.|+||||+|||||+++|++.+.+
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p 53 (247)
T TIGR00972 14 KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDL 53 (247)
T ss_pred eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 34788999999999 889999999999999999999864
No 354
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.24 E-value=1.3e-06 Score=86.24 Aligned_cols=58 Identities=21% Similarity=0.289 Sum_probs=51.6
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
.+++++++.+++| +.|+||+|+||||+++.|++...+. +|.|.+.+.++..++..-+|
T Consensus 495 ~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr 554 (711)
T TIGR00958 495 PVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLH 554 (711)
T ss_pred ccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHH
Confidence 4788899998888 9999999999999999999999888 78888888888888876666
No 355
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.24 E-value=4.1e-06 Score=72.44 Aligned_cols=54 Identities=15% Similarity=0.190 Sum_probs=40.1
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcc--cCceEEEEeecCc
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDL--VGEKGIVFTTNYV 72 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~--~~~~~vi~ttN~~ 72 (236)
...++.++++.+.+| ++|+||||+|||||++.|++.+.++. ...+.|.+...++
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~ 73 (258)
T PRK14241 16 SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDL 73 (258)
T ss_pred CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEec
Confidence 345788899999888 88999999999999999999886410 0145555544443
No 356
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.24 E-value=2.5e-06 Score=73.34 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=39.9
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC-c-ccCceEEEEeecCc
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY-D-LVGEKGIVFTTNYV 72 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~-~-~~~~~~vi~ttN~~ 72 (236)
+..++.++++.+.+| +.|+||||+|||||+++|++.+.+ + +...+-|.+....+
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~ 72 (250)
T PRK14240 15 DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDI 72 (250)
T ss_pred CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence 345788999999888 889999999999999999998652 1 01145555555444
No 357
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.23 E-value=2.3e-06 Score=84.09 Aligned_cols=58 Identities=24% Similarity=0.377 Sum_probs=51.9
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
.++.++++.+++| +.++||+|||||||++.|++...+. +|-|.+.+.++..++..-+|
T Consensus 471 ~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~---~G~I~idg~~i~~~~~~~~r 530 (694)
T TIGR01846 471 EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ---HGQVLVDGVDLAIADPAWLR 530 (694)
T ss_pred cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEehhhCCHHHHH
Confidence 4788899988888 9999999999999999999999888 78888888888899987776
No 358
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.23 E-value=2.1e-06 Score=75.22 Aligned_cols=59 Identities=15% Similarity=0.240 Sum_probs=42.5
Q ss_pred hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcc--cCceEEEEeecCcccc
Q 048723 17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDL--VGEKGIVFTTNYVDKL 75 (236)
Q Consensus 17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~--~~~~~vi~ttN~~~~l 75 (236)
+....++.++++.+.+| +.|+||+|+|||||+++|++.+.+.. ...+-|.+....+...
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~ 93 (276)
T PRK14271 31 FAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY 93 (276)
T ss_pred ECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcccc
Confidence 33445788999999888 88999999999999999999886410 0145555555444333
No 359
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.22 E-value=2.6e-07 Score=71.78 Aligned_cols=55 Identities=29% Similarity=0.495 Sum_probs=41.9
Q ss_pred hhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 24 AKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 24 ~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
+++++.+++| ++|+||+|||||||+++|++...+. .+.+.+....+...+...++
T Consensus 2 ~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~ 58 (137)
T PF00005_consen 2 KNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPD---SGSILINGKDISDIDIEELR 58 (137)
T ss_dssp EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHES---EEEEEETTEEGTTSHHHHHH
T ss_pred CceEEEEcCCCEEEEEccCCCccccceeeeccccccc---cccccccccccccccccccc
Confidence 4566667777 8899999999999999999998776 67777766666555444444
No 360
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.22 E-value=2.8e-06 Score=72.34 Aligned_cols=50 Identities=26% Similarity=0.480 Sum_probs=39.3
Q ss_pred hhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 25 KIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 25 ~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
++++.+.+| +.|+||||+|||||+++|++.+.+. .|-+.+..+.+...++
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~ 68 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPP 68 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCCh
Confidence 678888888 8899999999999999999998776 5666666555444443
No 361
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.22 E-value=1.8e-06 Score=78.39 Aligned_cols=44 Identities=18% Similarity=0.372 Sum_probs=36.3
Q ss_pred hhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecC
Q 048723 25 KIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNY 71 (236)
Q Consensus 25 ~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~ 71 (236)
++++.+.+| +.|+||+|||||||+++|++.+.++ .|.+.+....
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~ 61 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRV 61 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEE
Confidence 677888777 8899999999999999999998777 5666655543
No 362
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.22 E-value=1.9e-06 Score=82.61 Aligned_cols=63 Identities=22% Similarity=0.372 Sum_probs=52.6
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcc
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMD 86 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d 86 (236)
..+++++++.+++| +.++||+||||||+++.|++..++. .|.|.....++..++..-+|. ++.
T Consensus 342 ~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~-~I~ 406 (567)
T COG1132 342 KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRK-RIG 406 (567)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHH-hcc
Confidence 46889999999888 8899999999999999999999987 566666777888888877763 444
No 363
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.22 E-value=2.3e-06 Score=82.10 Aligned_cols=57 Identities=21% Similarity=0.215 Sum_probs=49.2
Q ss_pred HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
++.++++.+++| +.|+||+|+||||+++.|++...++ .|.|.+.+.++..++..-+|
T Consensus 357 ~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~---~G~i~~~g~~i~~~~~~~~~ 415 (555)
T TIGR01194 357 ALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ---EGEILLDGAAVSADSRDDYR 415 (555)
T ss_pred eeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHH
Confidence 678888888888 8999999999999999999999888 78788888788888765555
No 364
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.21 E-value=4e-06 Score=72.96 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=33.5
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~ 56 (236)
+..+++++++.+.+| ++|+||||+|||||+++|++.+.
T Consensus 33 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 72 (268)
T PRK14248 33 EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMND 72 (268)
T ss_pred CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 445788899999888 88999999999999999999764
No 365
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.21 E-value=1.8e-06 Score=81.62 Aligned_cols=57 Identities=19% Similarity=0.224 Sum_probs=43.8
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC--cccCceEEEEeecCccccch
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY--DLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~--~~~~~~~vi~ttN~~~~ld~ 77 (236)
....++.++++.+..| +.|+||+|+|||||+++|++.+.+ . .|.|.+....+...++
T Consensus 12 ~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~---~G~i~~~g~~~~~~~~ 72 (500)
T TIGR02633 12 GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTW---DGEIYWSGSPLKASNI 72 (500)
T ss_pred CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCCCCH
Confidence 3445789999999998 889999999999999999998865 3 4556665555544444
No 366
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.21 E-value=1.8e-06 Score=83.02 Aligned_cols=58 Identities=26% Similarity=0.378 Sum_probs=48.6
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
..++++++.+++| +.++||+|||||||++.|++...+. .|-+.+...+...+++.-+|
T Consensus 329 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~i~~~g~~~~~~~~~~~~ 388 (569)
T PRK10789 329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKLQLDSWR 388 (569)
T ss_pred ccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEHhhCCHHHHH
Confidence 4788888888888 8999999999999999999999877 67777777677777766555
No 367
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.21 E-value=1.2e-06 Score=74.20 Aligned_cols=55 Identities=22% Similarity=0.384 Sum_probs=44.2
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA 78 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a 78 (236)
.++.++++.+++| ++|+||+|+|||||+++|++.+.+. .+-|.+....+...+..
T Consensus 28 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 84 (226)
T cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ---GGQVLLDGKPISQYEHK 84 (226)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCCchHHcCHH
Confidence 4789999999988 8899999999999999999998776 56666665555444443
No 368
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.21 E-value=1.4e-06 Score=75.78 Aligned_cols=56 Identities=18% Similarity=0.170 Sum_probs=41.5
Q ss_pred hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc--ccCceEEEEeecCc
Q 048723 17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD--LVGEKGIVFTTNYV 72 (236)
Q Consensus 17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~--~~~~~~vi~ttN~~ 72 (236)
+....++.++++.+++| +.|+||+|+|||||+++|++.+.+. +...+-|.+...++
T Consensus 18 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i 77 (261)
T PRK14263 18 YGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDV 77 (261)
T ss_pred eCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEec
Confidence 34445788899999988 8899999999999999999998641 00145555555444
No 369
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.21 E-value=5.7e-06 Score=78.83 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=42.3
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcc--cCceEEEEeecCccccc
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDL--VGEKGIVFTTNYVDKLD 76 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~--~~~~~vi~ttN~~~~ld 76 (236)
.++.++++.+..| +.|+||+|||||||+++|++.+.+.. ...|-|.+....+..++
T Consensus 23 ~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred eeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC
Confidence 5789999999998 88999999999999999999987510 01455555555544444
No 370
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.20 E-value=1e-06 Score=74.88 Aligned_cols=54 Identities=26% Similarity=0.396 Sum_probs=42.6
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
.++.++++.+++| +.|+||+|+|||||+++|++.+.+. .|-+.+....+...++
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~ 71 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRDYTL 71 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCC---CCEEEECCEEhhhCCH
Confidence 4788899998888 8899999999999999999998766 5656655544444443
No 371
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.20 E-value=4e-06 Score=70.89 Aligned_cols=49 Identities=27% Similarity=0.453 Sum_probs=39.7
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN 70 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN 70 (236)
...++.++++.+.+| ++|+||||+|||||+++|++.+.+. .|-|.+...
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~ 62 (223)
T TIGR03740 12 KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGH 62 (223)
T ss_pred CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCE
Confidence 345788888888888 8899999999999999999998766 565555443
No 372
>PRK13949 shikimate kinase; Provisional
Probab=98.20 E-value=4.6e-06 Score=68.06 Aligned_cols=27 Identities=33% Similarity=0.422 Sum_probs=25.3
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNYDL 59 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~~~ 59 (236)
.++|+|||||||||+++.||..++.++
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~ 29 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSF 29 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCe
Confidence 489999999999999999999999886
No 373
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.20 E-value=4.2e-06 Score=73.24 Aligned_cols=49 Identities=24% Similarity=0.362 Sum_probs=41.3
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV 72 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~ 72 (236)
.++.++++.+.+| +.|+||||+|||||+++|++.+.+. .|-|.+...++
T Consensus 16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~ 66 (275)
T PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPI 66 (275)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEC
Confidence 4788999999998 8899999999999999999998776 66666665544
No 374
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.20 E-value=8.2e-07 Score=74.23 Aligned_cols=54 Identities=26% Similarity=0.312 Sum_probs=41.7
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC---CcccCceEEEEeecCccccc
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN---YDLVGEKGIVFTTNYVDKLD 76 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~---~~~~~~~~vi~ttN~~~~ld 76 (236)
..++.++++.+.+| ++|+||||+|||||+++|++.+. +. .+-+.+...++...+
T Consensus 20 ~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~---~G~i~i~g~~~~~~~ 78 (202)
T cd03233 20 IPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSV---EGDIHYNGIPYKEFA 78 (202)
T ss_pred ceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCc---ceEEEECCEECccch
Confidence 35788899998888 88999999999999999999987 44 455555554444443
No 375
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=98.19 E-value=8.4e-07 Score=74.08 Aligned_cols=72 Identities=21% Similarity=0.299 Sum_probs=61.7
Q ss_pred HHHHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCccc
Q 048723 11 KDLKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDK 87 (236)
Q Consensus 11 ~~v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d~ 87 (236)
+.+...|+.+.+..++++...+| +-|.||+|+||||.-..+.+...++ .+.|++...++..+|..-+. |+..
T Consensus 8 ~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RA--rlGi 81 (243)
T COG1137 8 ENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRA--RLGI 81 (243)
T ss_pred hhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHh--hcCc
Confidence 44566678888999999999999 7899999999999999999998888 89999999999999976554 6643
No 376
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.19 E-value=2e-06 Score=81.45 Aligned_cols=58 Identities=21% Similarity=0.287 Sum_probs=44.7
Q ss_pred hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC--cccCceEEEEeecCccccch
Q 048723 17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY--DLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~--~~~~~~~vi~ttN~~~~ld~ 77 (236)
|.+..++.++++.+..| +.|+||+|+|||||+++|++.+.+ . .|.|.+....+...++
T Consensus 15 ~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~ 76 (506)
T PRK13549 15 FGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTY---EGEIIFEGEELQASNI 76 (506)
T ss_pred eCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCCCCH
Confidence 34445789999999998 889999999999999999999875 3 4556665555544443
No 377
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.19 E-value=2.2e-06 Score=87.18 Aligned_cols=66 Identities=21% Similarity=0.365 Sum_probs=58.3
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcccEEe
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIE 90 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~ 90 (236)
.+++++++.++.| +.|+||+||||||++..|.+..++. .|-|...++++..++...+|. ++..+..
T Consensus 367 ~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~-~iglV~Q 434 (1228)
T KOG0055|consen 367 KILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRS-QIGLVSQ 434 (1228)
T ss_pred hhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHh-hcCeeee
Confidence 6899999999999 8999999999999999999999999 899999999999999887775 5654443
No 378
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.19 E-value=2.7e-06 Score=69.51 Aligned_cols=28 Identities=39% Similarity=0.451 Sum_probs=26.5
Q ss_pred cceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLNYDL 59 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~~~~ 59 (236)
+.++|+|++|+||||+.+.||..|+++|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 4589999999999999999999999999
No 379
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.19 E-value=2.1e-05 Score=76.50 Aligned_cols=28 Identities=43% Similarity=0.740 Sum_probs=24.7
Q ss_pred CcceEEECCCCCChHHHHHHHHhhcCCc
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
++.++|+|||||||||++++++..+...
T Consensus 50 ~~~~l~~G~~G~GKttla~~l~~~l~~~ 77 (637)
T PRK13765 50 RRHVMMIGSPGTGKSMLAKAMAELLPKE 77 (637)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHcChH
Confidence 3469999999999999999999998654
No 380
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.19 E-value=5.8e-06 Score=83.11 Aligned_cols=42 Identities=19% Similarity=0.173 Sum_probs=34.0
Q ss_pred ceEEEEeecCcc-----ccchHHHhcCCcccEEecccCCHHHHHHHHHHh
Q 048723 62 EKGIVFTTNYVD-----KLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSY 106 (236)
Q Consensus 62 ~~~vi~ttN~~~-----~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~ 106 (236)
...+|++|+..+ .+|+++.| ||. .|.++.|+.+++..|++.+
T Consensus 302 ~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 302 ELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGL 348 (852)
T ss_pred ceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHH
Confidence 467788887663 47999999 994 5889999999998888765
No 381
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.19 E-value=3.7e-06 Score=72.42 Aligned_cols=38 Identities=18% Similarity=0.414 Sum_probs=33.8
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~ 56 (236)
...++.++++.+.+| +.|+||||||||||+++|++.+.
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (252)
T PRK14256 16 KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHD 55 (252)
T ss_pred CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 345788999998888 88999999999999999999875
No 382
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.18 E-value=3.9e-06 Score=70.48 Aligned_cols=48 Identities=23% Similarity=0.362 Sum_probs=38.4
Q ss_pred HhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcc
Q 048723 23 CAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVD 73 (236)
Q Consensus 23 ~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~ 73 (236)
+.++++.+.+| +.|+||+|+|||||+++|++.+.+. .|-|.+...++.
T Consensus 14 ~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~ 63 (213)
T TIGR01277 14 PMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHT 63 (213)
T ss_pred ceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcc
Confidence 45778888878 8999999999999999999998777 566666554443
No 383
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.18 E-value=3e-06 Score=74.27 Aligned_cols=64 Identities=19% Similarity=0.223 Sum_probs=45.5
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcc-----cCceEEEEeecCccccchHHHh
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDL-----VGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~-----~~~~~vi~ttN~~~~ld~al~r 81 (236)
....+++++++.+.+| +.|+||+|+|||||+++|++.+.+.. .-.+-|.+....+..+++..++
T Consensus 12 ~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (272)
T PRK13547 12 RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLA 82 (272)
T ss_pred CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHH
Confidence 3445789999998888 88999999999999999999886530 0034555555555555544333
No 384
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.18 E-value=7.4e-07 Score=71.49 Aligned_cols=65 Identities=25% Similarity=0.308 Sum_probs=55.4
Q ss_pred hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
+....++.++++++.+| +-|.||+|||||||...+++.+...|.-.+-+.....+++.+|.+-+.
T Consensus 12 l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq 78 (213)
T COG4136 12 LPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQ 78 (213)
T ss_pred CCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhh
Confidence 34566788899999999 779999999999999999999999987778888888888888876444
No 385
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.17 E-value=1.8e-06 Score=81.84 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=39.7
Q ss_pred HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723 22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV 72 (236)
Q Consensus 22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~ 72 (236)
+++++++.+.+| +.|+||||||||||+++|++.+.+. .|-|.+....+
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~~ 327 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRA---GGEIRLNGKDI 327 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCEEC
Confidence 688899999999 8899999999999999999998776 56665554333
No 386
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.17 E-value=4.3e-06 Score=72.01 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=39.8
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc--ccCceEEEEeecCc
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD--LVGEKGIVFTTNYV 72 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~--~~~~~~vi~ttN~~ 72 (236)
...++.++++.+.+| +.|+||+|+|||||+++|++...+. ....|.|.+...++
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i 73 (251)
T PRK14270 16 EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNI 73 (251)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEec
Confidence 345788899998888 8899999999999999999987541 00145555544444
No 387
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.17 E-value=1.1e-06 Score=85.70 Aligned_cols=49 Identities=24% Similarity=0.286 Sum_probs=41.0
Q ss_pred hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEe
Q 048723 17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFT 68 (236)
Q Consensus 17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~t 68 (236)
|....+|.+++|.+.+| +.|+||||||||||+++|++.+.++ .|.|.+.
T Consensus 11 ~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd---~G~I~~~ 61 (638)
T PRK10636 11 RGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD---GGSYTFP 61 (638)
T ss_pred eCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEec
Confidence 45556899999999998 8999999999999999999988776 5555543
No 388
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.17 E-value=4e-06 Score=72.70 Aligned_cols=55 Identities=22% Similarity=0.343 Sum_probs=41.2
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV 72 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~ 72 (236)
.+..++.++++.+.+| ++|+||+|+|||||+++|++.+.+.....+-|.+....+
T Consensus 15 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~ 71 (262)
T PRK09984 15 NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTV 71 (262)
T ss_pred CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEec
Confidence 3445788999999888 889999999999999999999865411124555554443
No 389
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.17 E-value=4.3e-06 Score=72.20 Aligned_cols=50 Identities=24% Similarity=0.317 Sum_probs=40.2
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC----cccCceEEEEeecCc
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY----DLVGEKGIVFTTNYV 72 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~----~~~~~~~vi~ttN~~ 72 (236)
..+++++++.+.+| ++|+||||+|||||+++|++.+.+ . .|-|.+....+
T Consensus 16 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~---~G~i~~~g~~i 71 (254)
T PRK10418 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT---AGRVLLDGKPV 71 (254)
T ss_pred cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCc---CCEEEECCeec
Confidence 34788999999988 889999999999999999999876 4 45555554443
No 390
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.17 E-value=3e-06 Score=80.99 Aligned_cols=58 Identities=17% Similarity=0.251 Sum_probs=48.8
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
.++.++++.+++| +.++||+|||||||++.|++.+.+. .|-+.+...+...+++..+|
T Consensus 332 ~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~i~~~~~~~~~ 391 (544)
T TIGR01842 332 PTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDRETFG 391 (544)
T ss_pred cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEehhhCCHHHHh
Confidence 4688888888888 9999999999999999999999877 67777777677777776555
No 391
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.17 E-value=1.6e-06 Score=81.98 Aligned_cols=49 Identities=14% Similarity=0.210 Sum_probs=39.6
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV 72 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~ 72 (236)
.+++++++.+.+| +.|+||||||||||+++|++.+.+. .+-|.+....+
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~---~G~i~~~g~~~ 317 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRT---AGQVYLDGKPI 317 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCC---CceEEECCEEC
Confidence 3678889998888 8899999999999999999998766 55555544333
No 392
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.17 E-value=2.9e-06 Score=80.39 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=39.6
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC-cccCceEEEEeecCc
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY-DLVGEKGIVFTTNYV 72 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~-~~~~~~~vi~ttN~~ 72 (236)
.++.++++.+.+| +.|+||||+|||||+++|++.+.+ . .|-|.+...++
T Consensus 276 ~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~---~G~i~~~g~~~ 327 (506)
T PRK13549 276 KRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRW---EGEIFIDGKPV 327 (506)
T ss_pred ccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC---CcEEEECCEEC
Confidence 4788999999999 789999999999999999999874 4 45555544433
No 393
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.17 E-value=5.6e-06 Score=71.66 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=34.3
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
...++.++++.+.+| +.|+||||+|||||+++|++.+.+
T Consensus 24 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~ 64 (258)
T PRK14268 24 EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDL 64 (258)
T ss_pred CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCc
Confidence 345788999999988 889999999999999999998764
No 394
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.17 E-value=1.3e-06 Score=73.63 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=43.5
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD 76 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld 76 (236)
..++.++++.+.+| ++|+||+|+|||||+++|++.+.+. .+-|.+....+..++
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~ 69 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTL---EGKVHWSNKNESEPS 69 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCccccccc
Confidence 35788999999888 8899999999999999999998776 566666555554443
No 395
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.16 E-value=8.7e-06 Score=76.46 Aligned_cols=49 Identities=20% Similarity=0.190 Sum_probs=31.8
Q ss_pred HHHHHHHHHhh-hChhHHhhhC--CCCCcceEEECCCCCChHHHHHHHHhhc
Q 048723 7 EEIKKDLKKFS-EGKEYCAKIG--KAWKRGYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 7 ~~i~~~v~~~~-~~~~~~~~~~--~~~~rg~lL~GPpGtGKTtlakaia~~l 55 (236)
..|.+.+...+ ...++++.+. +.....++|.||||||||+++++|+...
T Consensus 12 ~~l~~~l~~~i~gre~vI~lll~aalag~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 12 SRLSSALEKGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred HHHHHHHhhhccCcHHHHHHHHHHHccCCCEEEECCCChhHHHHHHHHHHHh
Confidence 33444444444 3344444433 2234449999999999999999999754
No 396
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=1.4e-05 Score=77.66 Aligned_cols=44 Identities=9% Similarity=0.096 Sum_probs=32.4
Q ss_pred ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
..++|++|+....+-+.++. |- ..+.|..++.+.....+...+.
T Consensus 151 ~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~ 194 (614)
T PRK14971 151 YAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVAS 194 (614)
T ss_pred CeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHH
Confidence 56777888778889888888 43 5588888888777766665443
No 397
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.16 E-value=2.6e-06 Score=71.55 Aligned_cols=26 Identities=38% Similarity=0.704 Sum_probs=20.4
Q ss_pred cceEEECCCCCChHHHHHHHHhhcCC
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
.+++|+||||||||++++.|...+..
T Consensus 23 h~lLl~GppGtGKTmlA~~l~~lLP~ 48 (206)
T PF01078_consen 23 HHLLLIGPPGTGKTMLARRLPSLLPP 48 (206)
T ss_dssp --EEEES-CCCTHHHHHHHHHHCS--
T ss_pred CCeEEECCCCCCHHHHHHHHHHhCCC
Confidence 46999999999999999999988753
No 398
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.16 E-value=4.1e-06 Score=78.98 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=43.4
Q ss_pred hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723 17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD 76 (236)
Q Consensus 17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld 76 (236)
|....++.++++.+..| +.|+||||+|||||+++|++.+.+. .|.+.+....+...+
T Consensus 13 ~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~ 71 (490)
T PRK10938 13 LSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLS 71 (490)
T ss_pred cCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCC
Confidence 33445789999999888 8899999999999999999998776 555555444433333
No 399
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=4e-05 Score=68.30 Aligned_cols=75 Identities=13% Similarity=0.141 Sum_probs=56.9
Q ss_pred CCCcceEEECCCCCChHHHHHHHHhhcCC--------cc-----------------------------------------
Q 048723 29 AWKRGYLLYGPPGTGKSTMIAAMANFLNY--------DL----------------------------------------- 59 (236)
Q Consensus 29 ~~~rg~lL~GPpGtGKTtlakaia~~l~~--------~~----------------------------------------- 59 (236)
..+..++|+||+|+|||++++.++..+.. ++
T Consensus 24 ~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad 103 (313)
T PRK05564 24 RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSE 103 (313)
T ss_pred CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHHHhcCcccCCceEEEEechh
Confidence 34556999999999999999999997522 11
Q ss_pred -----------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHh
Q 048723 60 -----------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSY 106 (236)
Q Consensus 60 -----------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~ 106 (236)
....++|++|++++.+.|.++.+| ..+.|..++.+.....+...
T Consensus 104 ~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc---~~~~~~~~~~~~~~~~l~~~ 164 (313)
T PRK05564 104 KMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRC---QIYKLNRLSKEEIEKFISYK 164 (313)
T ss_pred hcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhc---eeeeCCCcCHHHHHHHHHHH
Confidence 236677777788899999988844 56888888887776555544
No 400
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.16 E-value=2.1e-06 Score=81.04 Aligned_cols=57 Identities=21% Similarity=0.287 Sum_probs=45.2
Q ss_pred hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723 17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD 76 (236)
Q Consensus 17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld 76 (236)
|.+..++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .|.|.+.+..+...+
T Consensus 8 ~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~ 66 (491)
T PRK10982 8 FPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKS 66 (491)
T ss_pred eCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCC
Confidence 33445789999999988 8899999999999999999998776 666766665554443
No 401
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.15 E-value=7.5e-06 Score=72.16 Aligned_cols=52 Identities=19% Similarity=0.360 Sum_probs=40.1
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC----cccCceEEEEeecCc
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY----DLVGEKGIVFTTNYV 72 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~----~~~~~~~vi~ttN~~ 72 (236)
...+++++++.+.+| ++|+||+|+|||||+++|++.+.+ +. .|-|.+..+.+
T Consensus 51 ~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~--~G~I~i~G~~i 108 (285)
T PRK14254 51 DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARV--EGELTFRGKNV 108 (285)
T ss_pred CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCC--ceEEEECCEEc
Confidence 345788999999888 889999999999999999999863 21 45555544443
No 402
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.15 E-value=4.2e-06 Score=79.27 Aligned_cols=39 Identities=28% Similarity=0.461 Sum_probs=30.6
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~ 56 (236)
.....++.+.+....| ++|+|||||||||+++.|++.+.
T Consensus 195 Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllp 235 (506)
T PRK09862 195 GQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLP 235 (506)
T ss_pred CcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCC
Confidence 3445666666666666 99999999999999999987654
No 403
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.15 E-value=7.4e-06 Score=83.44 Aligned_cols=143 Identities=16% Similarity=0.200 Sum_probs=92.9
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcccEEecccCCHHH
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEA 98 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~ 98 (236)
.+++++++.++.| +.|+||+||||||++..|-+..+++ .|.|.....++.+++..-+|. .+. +--.-|..=.
T Consensus 1004 ~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl~~LR~-~i~--lVsQEP~LF~ 1077 (1228)
T KOG0055|consen 1004 PVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNLKWLRK-QIG--LVSQEPVLFN 1077 (1228)
T ss_pred hhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCHHHHHH-hcc--eeccCchhhc
Confidence 5899999999888 9999999999999999999999999 899999999999999887773 221 1112233211
Q ss_pred HHHHHHHhhcccchhhHHHH---HHHHH-------------------cCCCCHHHHHHHHcccccccChH-HHHHHHHHH
Q 048723 99 FMVLAKSYLDIESHAFFAEI---NSLLA-------------------ETNMASADVAENLMPKSDEEDAD-SCLKNLIEA 155 (236)
Q Consensus 99 ~~~i~~~~l~~~~~~~~~~i---~~ll~-------------------~~gls~a~i~~~l~~~~~~~~~~-~~~~~~~~~ 155 (236)
...--+..++... ....++ .+++. -..+|++|-++..++++...+|. +.+...-+|
T Consensus 1078 ~TIrENI~YG~~~-vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSA 1156 (1228)
T KOG0055|consen 1078 GTIRENIAYGSEE-VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSA 1156 (1228)
T ss_pred ccHHHHHhccCCC-CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchh
Confidence 1111122223111 111111 11111 22578999888888877666665 455666777
Q ss_pred HHHHHHHHhhhHHHH
Q 048723 156 LKVAKEEARKNAEEE 170 (236)
Q Consensus 156 L~~~~~~~~~~~~~~ 170 (236)
|....++.=+++-++
T Consensus 1157 LDseSErvVQeALd~ 1171 (1228)
T KOG0055|consen 1157 LDSESERVVQEALDR 1171 (1228)
T ss_pred hhhhhHHHHHHHHHH
Confidence 777666655444443
No 404
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.15 E-value=2.9e-06 Score=80.57 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=42.4
Q ss_pred HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723 22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA 78 (236)
Q Consensus 22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a 78 (236)
.+.++++.+.+| +.|+||||+|||||+++|++.+.+. .|.|.+....+...++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~ 333 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR---GGRIMLNGKEINALSTA 333 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEECCCCCHH
Confidence 477888888888 7899999999999999999998766 56666655544444443
No 405
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.14 E-value=4.4e-06 Score=79.90 Aligned_cols=58 Identities=26% Similarity=0.332 Sum_probs=49.5
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
..++++++.+++| +.|+||+|+|||||++.|++...+. .|.+.+...+...+++.-+|
T Consensus 337 ~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~ 396 (547)
T PRK10522 337 FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVTAEQPEDYR 396 (547)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCCCCHHHHh
Confidence 3688888888888 9999999999999999999999887 78788877777777776555
No 406
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.14 E-value=5.2e-06 Score=71.89 Aligned_cols=54 Identities=17% Similarity=0.287 Sum_probs=39.9
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC--cccCceEEEEeecCc
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY--DLVGEKGIVFTTNYV 72 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~--~~~~~~~vi~ttN~~ 72 (236)
...++.++++.+.+| +.|+||||+|||||+++|++.+.+ .....+-|.+...++
T Consensus 24 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~ 81 (259)
T PRK14274 24 QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNI 81 (259)
T ss_pred CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEc
Confidence 345788899998888 889999999999999999998763 110135555544443
No 407
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.14 E-value=2.7e-06 Score=64.29 Aligned_cols=37 Identities=32% Similarity=0.415 Sum_probs=28.5
Q ss_pred cceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN 70 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN 70 (236)
+.++|+|||||||||+++.|+..+.... ..+++++.+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~ 39 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGE 39 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCE
Confidence 4589999999999999999999998761 134444443
No 408
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.14 E-value=7.3e-05 Score=68.29 Aligned_cols=45 Identities=13% Similarity=0.206 Sum_probs=32.1
Q ss_pred ceEEEEeecCcc---ccchHHHhcCCc-ccEEecccCCHHHHHHHHHHhhc
Q 048723 62 EKGIVFTTNYVD---KLDPALIRRGRM-DKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 62 ~~~vi~ttN~~~---~ld~al~r~gR~-d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
.+.+|+.+|..+ .+++.+.. |+ ...|.|+.++.++...+++.++.
T Consensus 173 ~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 173 RIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred eEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHH
Confidence 455788887664 46776665 44 35678888899988888887653
No 409
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.14 E-value=9.8e-06 Score=69.67 Aligned_cols=55 Identities=18% Similarity=0.288 Sum_probs=40.4
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC-c-ccCceEEEEeecCc
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY-D-LVGEKGIVFTTNYV 72 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~-~-~~~~~~vi~ttN~~ 72 (236)
....++.++++.+.+| +.|+||||+|||||+++|++.+.. + ....+-+.+....+
T Consensus 14 ~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~ 72 (250)
T PRK14262 14 GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDI 72 (250)
T ss_pred CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEc
Confidence 3445788999999988 889999999999999999998763 1 00145555554443
No 410
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.14 E-value=1.1e-05 Score=67.44 Aligned_cols=48 Identities=21% Similarity=0.438 Sum_probs=40.2
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN 70 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN 70 (236)
...++++++.+..| +.+.||+|||||||+..+|+...+. .+.+.....
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r 67 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGR 67 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCE
Confidence 35789999999988 7889999999999999999999877 565555443
No 411
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.14 E-value=5.9e-05 Score=66.59 Aligned_cols=29 Identities=41% Similarity=0.676 Sum_probs=26.4
Q ss_pred CcceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFLNYDL 59 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l~~~~ 59 (236)
.|++||.||||||||-|+-+|+.+++..+
T Consensus 64 GravLlaGppgtGKTAlAlaisqELG~kv 92 (456)
T KOG1942|consen 64 GRAVLLAGPPGTGKTALALAISQELGPKV 92 (456)
T ss_pred CcEEEEecCCCCchhHHHHHHHHHhCCCC
Confidence 57799999999999999999999998655
No 412
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.13 E-value=2e-06 Score=75.03 Aligned_cols=58 Identities=22% Similarity=0.111 Sum_probs=43.3
Q ss_pred HHHHHHHHHhh--hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEE
Q 048723 7 EEIKKDLKKFS--EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVF 67 (236)
Q Consensus 7 ~~i~~~v~~~~--~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ 67 (236)
+++......+. ....++.++++.+.+| +.|+||||+|||||+++|++.+.+. .|.+.+
T Consensus 22 ~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~---~G~I~~ 83 (264)
T PRK13546 22 ERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT---VGKVDR 83 (264)
T ss_pred HHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEE
Confidence 44544444342 3345788999999999 8899999999999999999998766 444443
No 413
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.12 E-value=5.2e-06 Score=71.57 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=34.3
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~ 56 (236)
.+..++.++++.+.+| +.|+||||+|||||+++|++...
T Consensus 17 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (253)
T PRK14261 17 GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMND 57 (253)
T ss_pred CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhcccc
Confidence 3445789999999998 88999999999999999999865
No 414
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.12 E-value=5.5e-05 Score=68.38 Aligned_cols=43 Identities=19% Similarity=0.128 Sum_probs=33.6
Q ss_pred eEEEEeecCcc-ccchHHHhcCCcccEEecccCCH-HHHHHHHHHhh
Q 048723 63 KGIVFTTNYVD-KLDPALIRRGRMDKRIEMSYCCF-EAFMVLAKSYL 107 (236)
Q Consensus 63 ~~vi~ttN~~~-~ld~al~r~gR~d~~i~~~~p~~-~~~~~i~~~~l 107 (236)
.++++++|..+ .++++++. ||..++.+++|.. +++..|++...
T Consensus 175 ~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL~~~~ 219 (337)
T TIGR02030 175 FVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEIVERRT 219 (337)
T ss_pred EEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHHHHhhh
Confidence 46677777655 69999999 9999999999975 77777777643
No 415
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.12 E-value=4.7e-06 Score=71.62 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=40.6
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcc--cCceEEEEeecCc
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDL--VGEKGIVFTTNYV 72 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~--~~~~~vi~ttN~~ 72 (236)
....++.++++.+.+| +.|+||+|+|||||+++|++...+.. ...+-+.+...++
T Consensus 14 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~ 72 (249)
T PRK14253 14 GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDI 72 (249)
T ss_pred CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEc
Confidence 3445789999999988 88999999999999999999876420 0135555544443
No 416
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.12 E-value=1.4e-05 Score=64.96 Aligned_cols=59 Identities=20% Similarity=0.302 Sum_probs=46.9
Q ss_pred HHHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcc
Q 048723 12 DLKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVD 73 (236)
Q Consensus 12 ~v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~ 73 (236)
.+..||+....+-++.+..+.| ++|.||+|.|||+|++.+.-.--+. ++-+.++.|+-+
T Consensus 7 ~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~---sg~l~ia~~~fd 67 (242)
T COG4161 7 GINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFD 67 (242)
T ss_pred ccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCC---CCeEEecccccc
Confidence 3566777888888999998888 8899999999999999987655555 677777766543
No 417
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.12 E-value=3.2e-05 Score=77.84 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=26.2
Q ss_pred cchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 75 LDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 75 ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
+.|+++. |+|.++.|..++.+....|+..++.
T Consensus 749 f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~ 780 (857)
T PRK10865 749 FRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQ 780 (857)
T ss_pred ccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHH
Confidence 4567777 8999999999999888888887763
No 418
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=5.1e-06 Score=78.65 Aligned_cols=58 Identities=26% Similarity=0.349 Sum_probs=52.2
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
..+.++++.++.| +.|+||+||||||++..|++.+.+. .|.+.+...+.+.+++.-+|
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~ 394 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWR 394 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHH
Confidence 5788888888888 8999999999999999999999987 88899998899999987777
No 419
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.12 E-value=2.8e-06 Score=80.43 Aligned_cols=56 Identities=21% Similarity=0.276 Sum_probs=43.8
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD 76 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld 76 (236)
.+..++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .|.|.+...++...+
T Consensus 15 ~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~ 72 (501)
T PRK11288 15 PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFAS 72 (501)
T ss_pred CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCC
Confidence 3445788999999998 8899999999999999999988766 566666554443333
No 420
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.12 E-value=3.8e-06 Score=79.53 Aligned_cols=53 Identities=13% Similarity=0.207 Sum_probs=42.1
Q ss_pred HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
.++++++.+.+| +.|+||||+|||||+++|++.+.++ .|-|.+....+...++
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~---~G~I~~~g~~i~~~~~ 321 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRT---SGYVTLDGHEVVTRSP 321 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCH
Confidence 478888888888 7899999999999999999998776 6666665544444443
No 421
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.12 E-value=7.3e-06 Score=71.09 Aligned_cols=42 Identities=21% Similarity=0.396 Sum_probs=36.7
Q ss_pred hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
+.+..++.++++.+.+| ++|+||||+|||||+++|++...++
T Consensus 20 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~ 63 (257)
T PRK14246 20 INDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIY 63 (257)
T ss_pred cCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 34556889999999888 8999999999999999999988765
No 422
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.11 E-value=1.3e-05 Score=75.22 Aligned_cols=106 Identities=18% Similarity=0.283 Sum_probs=67.1
Q ss_pred cceEEECCCCCChHHHHHHHHhhcC-----Ccc-----------------------------------------------
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLN-----YDL----------------------------------------------- 59 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~-----~~~----------------------------------------------- 59 (236)
.+++|+||+|+|||+|+++|++.+. ..+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k 221 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSYK 221 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccCC
Confidence 4599999999999999999999652 211
Q ss_pred ---------------cCceEEEEeecCc-c---ccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccch--hhHHH-
Q 048723 60 ---------------VGEKGIVFTTNYV-D---KLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESH--AFFAE- 117 (236)
Q Consensus 60 ---------------~~~~~vi~ttN~~-~---~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~--~~~~~- 117 (236)
..+..+|+|+|.+ . .+++.++.+-.-+..+.+..|+.+.+..+++..+..... .+..+
T Consensus 222 ~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~ev 301 (450)
T PRK14087 222 EKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEA 301 (450)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHH
Confidence 1134566666533 2 356777772223577789999999999999987754321 22222
Q ss_pred HHHHHHcCCCCHHHHHHHHc
Q 048723 118 INSLLAETNMASADVAENLM 137 (236)
Q Consensus 118 i~~ll~~~gls~a~i~~~l~ 137 (236)
+..++...+=++..+...|.
T Consensus 302 l~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 302 INFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHHccCCCHHHHHHHHH
Confidence 33333444445555554443
No 423
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.11 E-value=9.7e-06 Score=77.10 Aligned_cols=44 Identities=18% Similarity=0.152 Sum_probs=34.5
Q ss_pred ceEEEEeecCcc-------------ccchHHHhcCCcccEEe-cccCCHHHHHHHHHHhh
Q 048723 62 EKGIVFTTNYVD-------------KLDPALIRRGRMDKRIE-MSYCCFEAFMVLAKSYL 107 (236)
Q Consensus 62 ~~~vi~ttN~~~-------------~ld~al~r~gR~d~~i~-~~~p~~~~~~~i~~~~l 107 (236)
...+|+++|+.. .||+++++ |||.++. .++|+.+....|.++.+
T Consensus 343 ~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 343 RCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred CcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHH
Confidence 456888898763 58999999 9998764 57899888888887643
No 424
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.11 E-value=3.1e-06 Score=80.65 Aligned_cols=45 Identities=18% Similarity=0.338 Sum_probs=37.2
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEE
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVF 67 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ 67 (236)
..++.++++.+..| +.|+||||+|||||+++|++.+.+. .|-|.+
T Consensus 332 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~ 378 (530)
T PRK15064 332 GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD---SGTVKW 378 (530)
T ss_pred ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE
Confidence 34678888888888 8899999999999999999988766 455544
No 425
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.11 E-value=3.7e-05 Score=77.13 Aligned_cols=22 Identities=36% Similarity=0.889 Sum_probs=21.0
Q ss_pred eEEECCCCCChHHHHHHHHhhc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l 55 (236)
++|+||+|+|||+++++||..+
T Consensus 542 ~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 542 FLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 8899999999999999999976
No 426
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.10 E-value=6.9e-06 Score=71.42 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=34.2
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~ 56 (236)
.+..++.++++.+.+| +.|+||+|+|||||+++|++...
T Consensus 21 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 61 (264)
T PRK14243 21 GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLND 61 (264)
T ss_pred CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 3445788999999888 88999999999999999999875
No 427
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.10 E-value=4.7e-06 Score=71.78 Aligned_cols=40 Identities=23% Similarity=0.382 Sum_probs=35.0
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
...++.++++.+.+| ++|+||+|+|||||++.|++.+.+.
T Consensus 16 ~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~ 57 (251)
T PRK14249 16 KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIV 57 (251)
T ss_pred CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCcc
Confidence 345788999998888 8899999999999999999988654
No 428
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.10 E-value=9.8e-06 Score=69.43 Aligned_cols=48 Identities=21% Similarity=0.196 Sum_probs=43.0
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN 70 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN 70 (236)
...+++++|.+.+| +-|+|+||+|||||++.||+.+.++ .|.+.++..
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt---~G~v~v~G~ 89 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT---SGKVKVTGK 89 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC---CceEEEcce
Confidence 35789999999999 8899999999999999999999999 777877654
No 429
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.10 E-value=7.7e-06 Score=70.35 Aligned_cols=39 Identities=26% Similarity=0.385 Sum_probs=34.3
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~ 56 (236)
....++.++++.+.+| +.|+||||+|||||+++|++.+.
T Consensus 15 ~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14251 15 GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccc
Confidence 3445788899999888 88999999999999999999875
No 430
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.09 E-value=5.5e-05 Score=68.62 Aligned_cols=43 Identities=19% Similarity=0.138 Sum_probs=34.2
Q ss_pred eEEEEeecCcc-ccchHHHhcCCcccEEecccCC-HHHHHHHHHHhh
Q 048723 63 KGIVFTTNYVD-KLDPALIRRGRMDKRIEMSYCC-FEAFMVLAKSYL 107 (236)
Q Consensus 63 ~~vi~ttN~~~-~ld~al~r~gR~d~~i~~~~p~-~~~~~~i~~~~l 107 (236)
.++++|.|..+ .++++++. ||..++.+.+|. .+.+..|++...
T Consensus 188 fiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 188 FVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRVKIVEQRT 232 (350)
T ss_pred EEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHHHHHHhhh
Confidence 45566667655 59999999 999999999998 588888887754
No 431
>PLN03073 ABC transporter F family; Provisional
Probab=98.09 E-value=3.6e-06 Score=83.06 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=33.3
Q ss_pred HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
++.++++.+.+| +.|+||||||||||+++|++.+.+.
T Consensus 524 il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~ 562 (718)
T PLN03073 524 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPS 562 (718)
T ss_pred eEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 677888888888 8899999999999999999998766
No 432
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.09 E-value=8.5e-06 Score=71.53 Aligned_cols=44 Identities=18% Similarity=0.310 Sum_probs=30.3
Q ss_pred ceEEEEeecCcc---ccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 62 EKGIVFTTNYVD---KLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 62 ~~~vi~ttN~~~---~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
++.++++.|... .+++.++| .| .++.++.|+.+....|+..++.
T Consensus 148 ~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 148 DIQFVAAMNPTGGRNPISPRFLR--HF-NILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp SEEEEEEESSTTT--SHHHHHHT--TE-EEEE----TCCHHHHHHHHHHH
T ss_pred eeEEEEecCCCCCCCCCChHHhh--he-EEEEecCCChHHHHHHHHHHHh
Confidence 678888887643 47888888 67 7889999998888888776654
No 433
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.09 E-value=6.3e-06 Score=71.79 Aligned_cols=40 Identities=28% Similarity=0.440 Sum_probs=34.8
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
....+++++++.+.+| +.|+||+|+|||||+++|++.+.+
T Consensus 31 ~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~ 72 (267)
T PRK14237 31 GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDT 72 (267)
T ss_pred CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCc
Confidence 3445788999999888 889999999999999999998863
No 434
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.09 E-value=9.5e-06 Score=77.13 Aligned_cols=38 Identities=26% Similarity=0.444 Sum_probs=33.9
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhc
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l 55 (236)
....++.++++.+.+| +.|+||+|||||||+++|++.+
T Consensus 11 ~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 11 DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 3445789999999998 8999999999999999999986
No 435
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.08 E-value=7e-06 Score=70.65 Aligned_cols=39 Identities=23% Similarity=0.347 Sum_probs=34.2
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~ 56 (236)
....++.++++.+.+| +.|+||+|+|||||+++|++...
T Consensus 16 ~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~ 56 (251)
T PRK14244 16 GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMND 56 (251)
T ss_pred CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3445788999999888 88999999999999999999875
No 436
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.08 E-value=2.6e-06 Score=72.21 Aligned_cols=49 Identities=18% Similarity=0.352 Sum_probs=39.7
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC---CcccCceEEEEeecC
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN---YDLVGEKGIVFTTNY 71 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~---~~~~~~~~vi~ttN~ 71 (236)
..++.++++.+.+| +.|+||||+|||||+++|++.+. +. .+.+.+.+.+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~ 73 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQP 73 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEE
Confidence 45788999998888 88999999999999999999987 45 5555554433
No 437
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.07 E-value=3.1e-06 Score=70.15 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=38.0
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC--CcccCceEEEEeecC
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN--YDLVGEKGIVFTTNY 71 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~--~~~~~~~~vi~ttN~ 71 (236)
..++.++++.+.+| +.|+||||+|||||+++|++... +. .+.+.+....
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~---~G~i~~~g~~ 72 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVI---TGEILINGRP 72 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCc---ceEEEECCEe
Confidence 34788899988888 88999999999999999999753 33 4555554433
No 438
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.4e-05 Score=75.11 Aligned_cols=57 Identities=19% Similarity=0.322 Sum_probs=52.2
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHH
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALI 80 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~ 80 (236)
..+.++++.+.+| +.++|++||||||+++.|++.++++ .|-+.+.+-.+..+|+.-+
T Consensus 352 ~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~ 410 (573)
T COG4987 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQAL 410 (573)
T ss_pred chhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhH
Confidence 5899999999999 9999999999999999999999999 8999999989999988533
No 439
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.07 E-value=4.4e-06 Score=79.00 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=39.3
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC-cccCceEEEEeecCc
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY-DLVGEKGIVFTTNYV 72 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~-~~~~~~~vi~ttN~~ 72 (236)
.+++++++.+.+| +.|+||||+|||||+++|++.+.+ . .|-|.+....+
T Consensus 274 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~---~G~i~~~g~~~ 325 (500)
T TIGR02633 274 KRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF---EGNVFINGKPV 325 (500)
T ss_pred cccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC---CeEEEECCEEC
Confidence 4788999999998 889999999999999999999874 4 45555544333
No 440
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.06 E-value=3e-06 Score=70.42 Aligned_cols=50 Identities=24% Similarity=0.318 Sum_probs=40.8
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhc--CCcccCceEEEEeecCc
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFL--NYDLVGEKGIVFTTNYV 72 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l--~~~~~~~~~vi~ttN~~ 72 (236)
..++.++++.+.+| ++|+||+|+|||||+++|++.+ .+. .+-|.+....+
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~---~G~i~~~g~~~ 75 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV---SGEVLINGRPL 75 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEeC
Confidence 45889999999888 8899999999999999999998 655 56666554433
No 441
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.06 E-value=8.5e-06 Score=70.79 Aligned_cols=39 Identities=26% Similarity=0.392 Sum_probs=34.2
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
...++.++++.+.+| +.|+||+|+|||||+++|++.+.+
T Consensus 28 ~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 68 (265)
T PRK14252 28 GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDL 68 (265)
T ss_pred CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCC
Confidence 345788999998888 889999999999999999998764
No 442
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.06 E-value=1.5e-05 Score=75.58 Aligned_cols=143 Identities=12% Similarity=0.107 Sum_probs=88.0
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcc-cCceEEEEeecCccccchHHHhc---CCcccEEeccc-
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDL-VGEKGIVFTTNYVDKLDPALIRR---GRMDKRIEMSY- 93 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~-~~~~~vi~ttN~~~~ld~al~r~---gR~d~~i~~~~- 93 (236)
..+++++|.+.+| +.|+|.+||||||++.+|.+.+.... ...|-|++.+.++..++.+-+|. .++.++++-+.
T Consensus 23 ~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~ 102 (539)
T COG1123 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMT 102 (539)
T ss_pred eeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchh
Confidence 4688999999999 88999999999999999999998762 23567777777777787755532 13433333222
Q ss_pred ---CCH---HHHHHHHHHhhcccchhhHHHHHHHHHcC-------------CCCHHHHHHHHcccccccChH--------
Q 048723 94 ---CCF---EAFMVLAKSYLDIESHAFFAEINSLLAET-------------NMASADVAENLMPKSDEEDAD-------- 146 (236)
Q Consensus 94 ---p~~---~~~~~i~~~~l~~~~~~~~~~i~~ll~~~-------------gls~a~i~~~l~~~~~~~~~~-------- 146 (236)
|.. .+..+.+..|..........++..+++.. .||+++-++.+++++....|.
T Consensus 103 slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPT 182 (539)
T COG1123 103 SLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPT 182 (539)
T ss_pred hcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCc
Confidence 222 34444444454333344444555555544 457777776666533332221
Q ss_pred -----HHHHHHHHHHHHHHHHH
Q 048723 147 -----SCLKNLIEALKVAKEEA 163 (236)
Q Consensus 147 -----~~~~~~~~~L~~~~~~~ 163 (236)
..-..++..|++..++.
T Consensus 183 TaLDvt~q~qIL~llk~l~~e~ 204 (539)
T COG1123 183 TALDVTTQAQILDLLKDLQREL 204 (539)
T ss_pred cccCHHHHHHHHHHHHHHHHHc
Confidence 23445666666665444
No 443
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.05 E-value=1.2e-05 Score=69.53 Aligned_cols=39 Identities=26% Similarity=0.363 Sum_probs=34.4
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
...++.++++.+.+| +.|+||+|+|||||+++|++.+.+
T Consensus 19 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~ 59 (259)
T PRK14260 19 TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISEL 59 (259)
T ss_pred CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 345788999999888 889999999999999999998764
No 444
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.05 E-value=5.8e-06 Score=79.81 Aligned_cols=58 Identities=19% Similarity=0.298 Sum_probs=48.7
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
.++.++++.+++| +.++||+|+|||||++.|++...+. .|-+.+.+.+...+++..+|
T Consensus 349 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~ 408 (585)
T TIGR01192 349 QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDINTVTRESLR 408 (585)
T ss_pred ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCC---CCEEEECCEEhhhCCHHHHH
Confidence 4688888888888 8999999999999999999999877 67777777777777776555
No 445
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.05 E-value=6.2e-06 Score=72.65 Aligned_cols=53 Identities=21% Similarity=0.290 Sum_probs=38.7
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC--CcccCceEEEEeecCc
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN--YDLVGEKGIVFTTNYV 72 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~--~~~~~~~~vi~ttN~~ 72 (236)
..++.++++.+.+| ++|+||+|+|||||+++|++... +.....|.|.+....+
T Consensus 52 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i 108 (286)
T PRK14275 52 FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDI 108 (286)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEh
Confidence 34788899998888 88999999999999999999754 2000145555554433
No 446
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.05 E-value=2.4e-06 Score=72.06 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=32.6
Q ss_pred HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
+++++++.+.+| +.|+||||+|||||+++|++...+.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~ 40 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD 40 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC
Confidence 467788888888 8899999999999999999998766
No 447
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.05 E-value=3.1e-06 Score=68.61 Aligned_cols=45 Identities=29% Similarity=0.480 Sum_probs=37.6
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEE
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVF 67 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ 67 (236)
..+++++++.+.+| ++|+||+|+|||||+++|++.+.+. .+.+.+
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~ 60 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG---SGRIGM 60 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEE
Confidence 34788899998888 8899999999999999999998766 454444
No 448
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.04 E-value=5.1e-06 Score=79.63 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=33.7
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
.++.++++.+..| +.|+||||||||||+++|++.+.+.
T Consensus 336 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~ 375 (552)
T TIGR03719 336 LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD 375 (552)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence 4678888888888 8899999999999999999988665
No 449
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.04 E-value=3e-06 Score=73.34 Aligned_cols=57 Identities=21% Similarity=0.240 Sum_probs=44.6
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHH
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALI 80 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~ 80 (236)
.++.++++.+.+| +.|+||+|+|||||+++|++.+.+. .+-+.+....+..+++..+
T Consensus 35 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 35 PVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF---DGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred cceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCC---CCeEEECCEEhhhCCHHHH
Confidence 4788899998888 8899999999999999999988766 5556665555555554433
No 450
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.04 E-value=7.1e-06 Score=78.72 Aligned_cols=58 Identities=28% Similarity=0.440 Sum_probs=50.2
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
.+++++++.+++| ++++||+|+|||||++.|++.+.+. .|.+.+...+++.+++.-+|
T Consensus 354 ~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~---~G~I~i~g~~i~~~~~~~~~ 413 (576)
T TIGR02204 354 PALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPAELR 413 (576)
T ss_pred ccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHH
Confidence 3788889998888 9999999999999999999999887 77788888778888876665
No 451
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.04 E-value=8.3e-05 Score=74.89 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=25.7
Q ss_pred cchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 75 LDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 75 ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
+.|.++. |+|.++.|..++.+....|+...+.
T Consensus 746 F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 746 FRPEFLN--RIDEIVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred cCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHH
Confidence 4456665 9999999999999999988887653
No 452
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.04 E-value=1.1e-05 Score=72.37 Aligned_cols=39 Identities=33% Similarity=0.611 Sum_probs=32.1
Q ss_pred EECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 36 LYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 36 L~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
|+||+|||||||+++|++...+. .|-|.+....+..+++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~---~G~I~i~g~~i~~~~~ 39 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPP 39 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCH
Confidence 58999999999999999999877 6777777666655555
No 453
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.04 E-value=3.1e-06 Score=64.28 Aligned_cols=25 Identities=40% Similarity=0.809 Sum_probs=22.8
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
++|+|||||||||+++.|+..++..
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~ 26 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFP 26 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCe
Confidence 6899999999999999999988655
No 454
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.04 E-value=7.8e-05 Score=75.01 Aligned_cols=22 Identities=45% Similarity=0.853 Sum_probs=21.1
Q ss_pred eEEECCCCCChHHHHHHHHhhc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l 55 (236)
++|+||||+|||.++++||..+
T Consensus 599 ~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 599 FLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999988
No 455
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.04 E-value=3.3e-06 Score=70.39 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=34.7
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
.++.++++.+++| +.|.||+|+|||||+++|++...+.
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~ 58 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL 58 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCC
Confidence 4789999999988 8899999999999999999998766
No 456
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=9.5e-06 Score=76.40 Aligned_cols=58 Identities=19% Similarity=0.422 Sum_probs=51.0
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
+.+++.+++.+++| +.++|+|||||||++++|-+.+++ .|-|...+.+++.++..-+|
T Consensus 365 ~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~----sG~I~IdG~dik~~~~~SlR 424 (591)
T KOG0057|consen 365 RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDY----SGSILIDGQDIKEVSLESLR 424 (591)
T ss_pred CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhcc----CCcEEECCeeHhhhChHHhh
Confidence 45899999999999 999999999999999999999994 47778888888888877677
No 457
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.03 E-value=1.8e-05 Score=66.40 Aligned_cols=44 Identities=27% Similarity=0.373 Sum_probs=32.8
Q ss_pred hhCCCCC-cceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecC
Q 048723 25 KIGKAWK-RGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNY 71 (236)
Q Consensus 25 ~~~~~~~-rg~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~ 71 (236)
++++.+. .-+.|+||+|+|||||+++|++.+.+. .|-+.+...+
T Consensus 16 ~vsl~i~~e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~ 60 (214)
T cd03297 16 KIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTV 60 (214)
T ss_pred CceEEEcceeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEe
Confidence 5554443 448899999999999999999998766 5555554443
No 458
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.03 E-value=1.5e-05 Score=68.54 Aligned_cols=38 Identities=24% Similarity=0.393 Sum_probs=33.3
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~ 56 (236)
...++.++++.+.+| +.|+||+|+|||||+++|++...
T Consensus 15 ~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (250)
T PRK14266 15 DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMND 54 (250)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 345788899998888 88999999999999999999864
No 459
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.03 E-value=1.4e-05 Score=69.86 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=34.1
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
+..++.++++.+.+| +.|+||+|+|||||+++|++.+..
T Consensus 37 ~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~ 77 (272)
T PRK14236 37 DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDL 77 (272)
T ss_pred CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 345788899999888 889999999999999999998763
No 460
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.03 E-value=5.1e-05 Score=67.02 Aligned_cols=26 Identities=46% Similarity=0.760 Sum_probs=23.7
Q ss_pred CcceEEECCCCCChHHHHHHHHhhcC
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l~ 56 (236)
+..+||+||||+|||+++.++|+.+.
T Consensus 24 ~halL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 24 PHALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred CceeeeeCCCCCCHHHHHHHHHHHHh
Confidence 34699999999999999999999987
No 461
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.02 E-value=5.2e-06 Score=79.68 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=33.9
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
.++.++++.+.+| +.|+||||+|||||+++|++.+.+.
T Consensus 338 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~ 377 (556)
T PRK11819 338 LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD 377 (556)
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4678888888888 8899999999999999999988766
No 462
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.02 E-value=2.5e-06 Score=74.52 Aligned_cols=47 Identities=23% Similarity=0.276 Sum_probs=38.9
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEee
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTT 69 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~tt 69 (236)
..++.++++.+.+| ++|+||||+|||||+++|++.+.+. .|-|.+..
T Consensus 20 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g 68 (272)
T PRK15056 20 HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA---SGKISILG 68 (272)
T ss_pred cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECC
Confidence 45788999998888 8899999999999999999998766 55555544
No 463
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.02 E-value=1.1e-05 Score=72.61 Aligned_cols=53 Identities=23% Similarity=0.295 Sum_probs=39.7
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc--ccCceEEEEeecCcc
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD--LVGEKGIVFTTNYVD 73 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~--~~~~~~vi~ttN~~~ 73 (236)
.++.++++.+.+| ++|+||+|||||||+++|++..... ....|-|.+.+..+.
T Consensus 96 ~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 96 HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 4788899999988 8999999999999999999987531 001455555554443
No 464
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.02 E-value=3.3e-06 Score=80.40 Aligned_cols=51 Identities=22% Similarity=0.247 Sum_probs=42.0
Q ss_pred HhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEe
Q 048723 15 KFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFT 68 (236)
Q Consensus 15 ~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~t 68 (236)
..+....+|.++++.+..| |.|+|+||+|||||+++|++.+.+. .+-|...
T Consensus 11 ~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~ 63 (530)
T COG0488 11 LAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRP 63 (530)
T ss_pred EeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeec
Confidence 3456777899999888887 9999999999999999999999777 4544443
No 465
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.01 E-value=1.1e-05 Score=69.40 Aligned_cols=55 Identities=18% Similarity=0.151 Sum_probs=39.6
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC--CcccCceEEEEeecCcc
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN--YDLVGEKGIVFTTNYVD 73 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~--~~~~~~~~vi~ttN~~~ 73 (236)
...++.++++.+.+| +.|+||||+|||||+++|++..+ ++....|-|.+...++.
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~ 73 (250)
T PRK14245 15 DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIY 73 (250)
T ss_pred CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecc
Confidence 345788899999888 88999999999999999998743 21001355555554443
No 466
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.01 E-value=7e-06 Score=86.66 Aligned_cols=37 Identities=19% Similarity=0.353 Sum_probs=34.3
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
.+++++++.+++| +.|+||+||||||+++.|.+...+
T Consensus 1182 ~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1182 PIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred ccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 4789999998888 999999999999999999999987
No 467
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.00 E-value=3.2e-06 Score=73.15 Aligned_cols=41 Identities=27% Similarity=0.480 Sum_probs=35.7
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
.+..++.++++.+.+| +.|+||||+|||||+++|++.+.+.
T Consensus 15 ~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~ 57 (251)
T PRK09544 15 GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD 57 (251)
T ss_pred CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 3445788899998888 8899999999999999999998766
No 468
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=97.99 E-value=2e-05 Score=76.98 Aligned_cols=55 Identities=22% Similarity=0.238 Sum_probs=46.1
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA 78 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a 78 (236)
..++++++.+.+| ++|+||||||||||+++|++.+.+. .+-+.+...++..++.+
T Consensus 22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~i~~~~~~ 78 (648)
T PRK10535 22 EVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPT---SGTYRVAGQDVATLDAD 78 (648)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEcCcCCHH
Confidence 4788999888888 8999999999999999999998877 67777777666666654
No 469
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=8.4e-05 Score=73.25 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=25.9
Q ss_pred chHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 76 DPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 76 d~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
.|.++. |+|.+|.|...+.+....|+..++.
T Consensus 676 ~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~ 706 (786)
T COG0542 676 RPEFLN--RIDEIIPFNPLSKEVLERIVDLQLN 706 (786)
T ss_pred CHHHHh--hcccEEeccCCCHHHHHHHHHHHHH
Confidence 456666 9999999999999999999888764
No 470
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=97.99 E-value=1.8e-05 Score=68.06 Aligned_cols=38 Identities=24% Similarity=0.425 Sum_probs=33.3
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~ 56 (236)
...++.++++.+.+| +.|+||+|+|||||+++|++...
T Consensus 17 ~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (252)
T PRK14239 17 KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMND 56 (252)
T ss_pred CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccc
Confidence 345788999999888 88999999999999999999753
No 471
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.98 E-value=3.6e-06 Score=66.75 Aligned_cols=44 Identities=30% Similarity=0.337 Sum_probs=36.6
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEE
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVF 67 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ 67 (236)
..+.++++.+.+| ++|.||+|+|||||+++|++.+.+. .+.|.+
T Consensus 14 ~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~ 59 (144)
T cd03221 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD---EGIVTW 59 (144)
T ss_pred eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEE
Confidence 4677888888888 7899999999999999999998766 555544
No 472
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=97.98 E-value=1.9e-05 Score=72.25 Aligned_cols=124 Identities=14% Similarity=0.132 Sum_probs=88.0
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcc--cCceEEEEeecCccccchHHHhc---CCcccEEec
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDL--VGEKGIVFTTNYVDKLDPALIRR---GRMDKRIEM 91 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~--~~~~~vi~ttN~~~~ld~al~r~---gR~d~~i~~ 91 (236)
....+++++|++.+| +.|+|.+|||||..+.+|.+.+..+. ...+-+.+.+.+.-.+++.-+|. .|+.++|.-
T Consensus 22 ~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQE 101 (534)
T COG4172 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQE 101 (534)
T ss_pred ceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecc
Confidence 345788899999999 88999999999999999999997643 44567788887777777655542 246666655
Q ss_pred ccCCH-------HHHHHHHHHhhcccchhhHHHHHHHHHcC--------------CCCHHHHHHHHcccccc
Q 048723 92 SYCCF-------EAFMVLAKSYLDIESHAFFAEINSLLAET--------------NMASADVAENLMPKSDE 142 (236)
Q Consensus 92 ~~p~~-------~~~~~i~~~~l~~~~~~~~~~i~~ll~~~--------------gls~a~i~~~l~~~~~~ 142 (236)
++.+. .+..+.++.|-+........++..+++.. .+|+++-+..+++.+..
T Consensus 102 PMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALa 173 (534)
T COG4172 102 PMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALA 173 (534)
T ss_pred cccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHc
Confidence 55443 44555667777766666666666666644 45888877777764433
No 473
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.97 E-value=1.2e-05 Score=74.34 Aligned_cols=29 Identities=28% Similarity=0.578 Sum_probs=26.6
Q ss_pred CcceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFLNYDL 59 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l~~~~ 59 (236)
+++++|+||||||||+++++||..++.+|
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 46799999999999999999999998874
No 474
>PRK06217 hypothetical protein; Validated
Probab=97.97 E-value=1.3e-05 Score=65.94 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=24.6
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCcc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYDL 59 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~~ 59 (236)
++|+|+|||||||+++.|+..++.++
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l~~~~ 29 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERLDIPH 29 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 88999999999999999999998876
No 475
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.97 E-value=8.6e-06 Score=76.89 Aligned_cols=53 Identities=8% Similarity=0.173 Sum_probs=41.9
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD 76 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld 76 (236)
.+++++++.+++| +.|+||+|||||||+++|++.+.+. .|-|.+....+...+
T Consensus 262 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~ 316 (491)
T PRK10982 262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS---AGTITLHGKKINNHN 316 (491)
T ss_pred cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCC---ccEEEECCEECCCCC
Confidence 3688889989888 8899999999999999999998766 566666554444333
No 476
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=97.96 E-value=1.4e-06 Score=72.57 Aligned_cols=66 Identities=21% Similarity=0.292 Sum_probs=54.0
Q ss_pred HHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEee-cCccccchHHHh
Q 048723 13 LKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTT-NYVDKLDPALIR 81 (236)
Q Consensus 13 v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~tt-N~~~~ld~al~r 81 (236)
+...++....+++++|.+..| =+|+||||.||||++..|.+...+. .+-+++.. .++..+|...+.
T Consensus 11 vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~---~G~v~f~g~~dl~~~~e~~IA 79 (249)
T COG4674 11 VSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGDTDLTKLPEHRIA 79 (249)
T ss_pred eEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCC---cceEEEcCchhhccCCHHHHH
Confidence 334456677888999999999 5799999999999999999999888 67777766 778888877665
No 477
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.96 E-value=2.7e-05 Score=64.40 Aligned_cols=50 Identities=26% Similarity=0.363 Sum_probs=40.3
Q ss_pred hCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723 26 IGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA 78 (236)
Q Consensus 26 ~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a 78 (236)
+++.++.| +.++||+|+|||||+..||++.-+. .+.+.....+....+|+
T Consensus 18 fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~ 69 (231)
T COG3840 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPA 69 (231)
T ss_pred EEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcc
Confidence 34455555 8999999999999999999999888 67777777666777775
No 478
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.96 E-value=5e-06 Score=78.43 Aligned_cols=38 Identities=21% Similarity=0.391 Sum_probs=33.0
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~ 56 (236)
...++.++++.+.+| +.|+||+|+|||||+++|++...
T Consensus 272 ~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~ 311 (490)
T PRK10938 272 DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP 311 (490)
T ss_pred CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 344788899999888 88999999999999999999754
No 479
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.95 E-value=8.4e-06 Score=65.48 Aligned_cols=29 Identities=38% Similarity=0.430 Sum_probs=25.9
Q ss_pred CCcceEEECCCCCChHHHHHHHHhhcCCc
Q 048723 30 WKRGYLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
.+..++|+|||||||||+++.||..++.+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~ 31 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYD 31 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 44569999999999999999999999876
No 480
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.95 E-value=3.1e-05 Score=75.12 Aligned_cols=26 Identities=42% Similarity=0.796 Sum_probs=25.2
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCcc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYDL 59 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~~ 59 (236)
+||+||||-||||||+.||+..++.+
T Consensus 329 lLL~GppGlGKTTLAHViAkqaGYsV 354 (877)
T KOG1969|consen 329 LLLCGPPGLGKTTLAHVIAKQAGYSV 354 (877)
T ss_pred EEeecCCCCChhHHHHHHHHhcCceE
Confidence 88999999999999999999999998
No 481
>PLN03232 ABC transporter C family member; Provisional
Probab=97.95 E-value=6.8e-06 Score=87.06 Aligned_cols=62 Identities=19% Similarity=0.238 Sum_probs=54.0
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCc
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRM 85 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~ 85 (236)
+.+++++++.+++| +.++||+|+|||||+++|.+...+. .|.|.+.+.++..++..-+|. ++
T Consensus 1249 ~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~IdG~di~~i~~~~lR~-~i 1312 (1495)
T PLN03232 1249 PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE---KGRIMIDDCDVAKFGLTDLRR-VL 1312 (1495)
T ss_pred CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CceEEECCEEhhhCCHHHHHh-hc
Confidence 35788999988888 9999999999999999999999988 888898888999998877763 44
No 482
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.94 E-value=3e-05 Score=73.56 Aligned_cols=41 Identities=27% Similarity=0.513 Sum_probs=30.2
Q ss_pred HHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhh
Q 048723 14 KKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~ 54 (236)
...+......+.+.+....+ ++|+|||||||||++++|++.
T Consensus 192 ~dv~Gq~~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~l 234 (499)
T TIGR00368 192 KDIKGQQHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGI 234 (499)
T ss_pred HHhcCcHHHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcc
Confidence 33344455556666655555 999999999999999999864
No 483
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.94 E-value=5.5e-05 Score=69.70 Aligned_cols=130 Identities=15% Similarity=0.100 Sum_probs=75.7
Q ss_pred cceEEECCCCCChHHHHHHHHhhcCCcc----------------------------------------------------
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLNYDL---------------------------------------------------- 59 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~~~~---------------------------------------------------- 59 (236)
..++|+||.|+|||.|++++++......
T Consensus 114 nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~gk~~~ 193 (408)
T COG0593 114 NPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAGKERT 193 (408)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhhccCeeeechHhHhcCChhH
Confidence 3499999999999999999999873222
Q ss_pred -------------cCceEEEEeecCccc---cchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccchhhHHHHHHHH-
Q 048723 60 -------------VGEKGIVFTTNYVDK---LDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLL- 122 (236)
Q Consensus 60 -------------~~~~~vi~ttN~~~~---ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll- 122 (236)
.+..+++.+...|.. +.|.|..+-.....+.+..|+.+.+..+++............++..++
T Consensus 194 qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la 273 (408)
T COG0593 194 QEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLA 273 (408)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 223344444445554 447888732345677889999999999998865544444444333332
Q ss_pred HcCCCCHHHHHHHHc---ccccccChHHHHHHHHHHHHHHHH
Q 048723 123 AETNMASADVAENLM---PKSDEEDADSCLKNLIEALKVAKE 161 (236)
Q Consensus 123 ~~~gls~a~i~~~l~---~~~~~~~~~~~~~~~~~~L~~~~~ 161 (236)
....=+-.++...+. ..+......++...+...|+....
T Consensus 274 ~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~ 315 (408)
T COG0593 274 KRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLR 315 (408)
T ss_pred HHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhc
Confidence 222333333333332 233333334555555555554433
No 484
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.94 E-value=1.3e-05 Score=76.13 Aligned_cols=45 Identities=20% Similarity=0.335 Sum_probs=38.3
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEe
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFT 68 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~t 68 (236)
.++.+++|.+.+| +.|+||||+|||||+++|++.+.+. .|-|.+.
T Consensus 298 ~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~ 344 (520)
T TIGR03269 298 KAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT---SGEVNVR 344 (520)
T ss_pred eEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEEe
Confidence 4688899999988 8899999999999999999998766 5655553
No 485
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.94 E-value=1.6e-05 Score=70.58 Aligned_cols=56 Identities=21% Similarity=0.409 Sum_probs=47.8
Q ss_pred HhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 23 CAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 23 ~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
+.+.++.++.| +++.|-+|||||||+++|.+...+. .+-+.+.+.++..++++-+|
T Consensus 44 v~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr 101 (386)
T COG4175 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELR 101 (386)
T ss_pred eccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHH
Confidence 34566788888 7789999999999999999999988 88889999899999876553
No 486
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.93 E-value=1.6e-05 Score=63.47 Aligned_cols=51 Identities=29% Similarity=0.446 Sum_probs=40.3
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccc
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDK 74 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ 74 (236)
..+.++++.+.+| ++|+||+|+|||||+++|++.+.+. .+.+.+.......
T Consensus 13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~---~G~i~~~~~~~~~ 65 (157)
T cd00267 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAK 65 (157)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEccc
Confidence 4677788888877 8899999999999999999998776 6666665544433
No 487
>PLN03130 ABC transporter C family member; Provisional
Probab=97.93 E-value=9.7e-06 Score=86.36 Aligned_cols=61 Identities=16% Similarity=0.243 Sum_probs=54.0
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCc
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRM 85 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~ 85 (236)
.+++++++.+++| +.++||+|+|||||+++|.+...+. .|.|.+.+.++..++..-+|. ++
T Consensus 1253 ~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~---~G~I~IDG~dI~~i~l~~LR~-~I 1315 (1622)
T PLN03130 1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE---RGRILIDGCDISKFGLMDLRK-VL 1315 (1622)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCEecccCCHHHHHh-cc
Confidence 4788999998888 9999999999999999999999988 888898998999999877773 44
No 488
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.93 E-value=1.6e-05 Score=72.08 Aligned_cols=27 Identities=33% Similarity=0.516 Sum_probs=24.0
Q ss_pred CcceEEECCCCCChHHHHHHHHhhcCC
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
++.++|+||||||||||+++|++.++.
T Consensus 78 r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 78 KQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 344899999999999999999999965
No 489
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.92 E-value=2.2e-05 Score=69.80 Aligned_cols=38 Identities=21% Similarity=0.333 Sum_probs=33.4
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~ 56 (236)
...++.++++.+.+| +.|+||+|+|||||+++|++.+.
T Consensus 57 ~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~ 96 (305)
T PRK14264 57 DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMND 96 (305)
T ss_pred CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 345788888988888 88999999999999999999875
No 490
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=97.91 E-value=6.4e-06 Score=71.96 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=34.1
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~ 56 (236)
...++.++++.+.+| ++|+||||+|||||+++|++.+.
T Consensus 36 ~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 36 EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 445788999999988 88999999999999999999886
No 491
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=1.6e-05 Score=74.34 Aligned_cols=43 Identities=37% Similarity=0.490 Sum_probs=36.8
Q ss_pred HHHHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHh
Q 048723 11 KDLKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMAN 53 (236)
Q Consensus 11 ~~v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~ 53 (236)
+.+..+++.+.++.+-++.+.+| |-|+||+|+|||||+++|++
T Consensus 84 ~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 84 DNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred eeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 35566777888888877777777 99999999999999999998
No 492
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=97.90 E-value=1.3e-05 Score=75.33 Aligned_cols=67 Identities=21% Similarity=0.227 Sum_probs=55.1
Q ss_pred HHHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 12 DLKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 12 ~v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
.+...|..-..+++++|.+.+| ..|+|.||+|||||+|.|++...++ .+-+.+.+....-.+|.-.+
T Consensus 13 ~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~ 81 (500)
T COG1129 13 GISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDAL 81 (500)
T ss_pred cceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHH
Confidence 3455566667899999999999 8899999999999999999999988 78888887766666665544
No 493
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.89 E-value=7.7e-05 Score=61.69 Aligned_cols=48 Identities=23% Similarity=0.290 Sum_probs=41.5
Q ss_pred HHHHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 11 KDLKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 11 ~~v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
+++...|...++++.+++..+.| +.++|.+||||||+++||.-.-.+.
T Consensus 10 ~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~ 59 (256)
T COG4598 10 EDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS 59 (256)
T ss_pred hHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC
Confidence 45666778889999999999999 7899999999999999998766665
No 494
>PRK13409 putative ATPase RIL; Provisional
Probab=97.89 E-value=7.3e-06 Score=79.26 Aligned_cols=42 Identities=21% Similarity=0.160 Sum_probs=34.6
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEE
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIV 66 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi 66 (236)
..+.++. .+.+| +.|+||||+|||||+++|++.+.++ .|-+.
T Consensus 88 ~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~---~G~i~ 131 (590)
T PRK13409 88 FKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN---LGDYE 131 (590)
T ss_pred eeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC---Ccccc
Confidence 4677777 67777 7899999999999999999998877 45554
No 495
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=0.00018 Score=65.33 Aligned_cols=42 Identities=10% Similarity=0.085 Sum_probs=33.0
Q ss_pred ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHh
Q 048723 62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSY 106 (236)
Q Consensus 62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~ 106 (236)
..++|+.++.++.+.|.++. |. ..+.++.++.++...++...
T Consensus 171 ~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~ 212 (351)
T PRK09112 171 RALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHL 212 (351)
T ss_pred CceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHh
Confidence 56777778888898888877 55 57899999988888777763
No 496
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=5.8e-05 Score=67.94 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=32.7
Q ss_pred CceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHH
Q 048723 61 GEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKS 105 (236)
Q Consensus 61 ~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~ 105 (236)
...++|++|+.+..+.|.++. |- ..+.|..|+.+.....+..
T Consensus 139 ~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 139 GGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred CCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 477888888889999999888 44 5689998888877655554
No 497
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.88 E-value=7.4e-06 Score=70.44 Aligned_cols=40 Identities=28% Similarity=0.497 Sum_probs=34.9
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
....+++++++.+.+| +.|+||+|+|||||+++|++.+.+
T Consensus 15 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 56 (252)
T PRK14272 15 GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDL 56 (252)
T ss_pred CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 3445789999998888 789999999999999999998764
No 498
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.88 E-value=6.8e-06 Score=80.12 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=39.8
Q ss_pred hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEE
Q 048723 17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVF 67 (236)
Q Consensus 17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ 67 (236)
+....+|.+++|.+.+| +.|+||||||||||+++|++.+.++ .|.|.+
T Consensus 13 ~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~---~G~I~~ 62 (635)
T PRK11147 13 FSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD---DGRIIY 62 (635)
T ss_pred eCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEe
Confidence 44556899999999988 8899999999999999999988766 454443
No 499
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.87 E-value=0.00033 Score=69.98 Aligned_cols=45 Identities=18% Similarity=0.198 Sum_probs=31.6
Q ss_pred ceEEEEeecCc---cccchHHHhcCCcc-cEEecccCCHHHHHHHHHHhhc
Q 048723 62 EKGIVFTTNYV---DKLDPALIRRGRMD-KRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 62 ~~~vi~ttN~~---~~ld~al~r~gR~d-~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
.++||+.+|.. +.|+|.+.. |+. ..|.|+.++.+++..|+...+.
T Consensus 902 KLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe 950 (1164)
T PTZ00112 902 KLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLE 950 (1164)
T ss_pred eEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHH
Confidence 46777888864 456677666 443 2467788899999989887654
No 500
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.87 E-value=0.00021 Score=65.37 Aligned_cols=43 Identities=9% Similarity=0.097 Sum_probs=34.3
Q ss_pred ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723 62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL 107 (236)
Q Consensus 62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l 107 (236)
..++|++|+.++.+.|.++. |. ..+.|+.++.+....++....
T Consensus 171 ~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 171 RSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred CeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhc
Confidence 67888899999999888766 54 678999998888877777654
Done!