Query 048723
Match_columns 236
No_of_seqs 226 out of 2160
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 21:44:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048723.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048723hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 1.2E-29 4.1E-34 230.8 14.2 136 3-138 154-364 (405)
2 4b4t_I 26S protease regulatory 100.0 1.7E-29 6E-34 230.8 12.1 136 3-138 188-398 (437)
3 4b4t_L 26S protease subunit RP 100.0 3E-29 1E-33 230.8 12.6 156 3-158 187-421 (437)
4 4b4t_H 26S protease regulatory 100.0 8.3E-29 2.8E-33 228.2 13.0 136 3-138 215-425 (467)
5 4b4t_M 26S protease regulatory 100.0 4.6E-29 1.6E-33 229.4 11.1 135 3-137 187-396 (434)
6 4b4t_K 26S protease regulatory 100.0 1.4E-28 4.7E-33 226.0 13.9 135 3-137 178-388 (428)
7 3cf2_A TER ATPase, transitiona 99.9 2.6E-24 8.8E-29 210.4 5.8 146 3-160 483-703 (806)
8 2x8a_A Nuclear valosin-contain 99.9 5.5E-23 1.9E-27 178.6 12.3 136 3-138 16-228 (274)
9 3cf2_A TER ATPase, transitiona 99.9 5.1E-23 1.8E-27 201.3 13.3 146 4-161 211-428 (806)
10 3cf0_A Transitional endoplasmi 99.8 7.4E-20 2.5E-24 160.3 14.3 135 3-137 21-230 (301)
11 3h4m_A Proteasome-activating n 99.8 1.7E-19 5.7E-24 155.6 13.9 158 3-160 23-259 (285)
12 2ce7_A Cell division protein F 99.8 2.4E-19 8.1E-24 166.8 13.9 156 3-159 22-256 (476)
13 1lv7_A FTSH; alpha/beta domain 99.8 6E-19 2.1E-23 150.4 12.9 135 3-138 18-227 (257)
14 1xwi_A SKD1 protein; VPS4B, AA 99.8 2.8E-18 9.7E-23 151.9 17.4 132 3-137 18-224 (322)
15 3eie_A Vacuolar protein sortin 99.8 3.5E-18 1.2E-22 150.9 15.6 132 3-137 24-229 (322)
16 2qz4_A Paraplegin; AAA+, SPG7, 99.8 1.4E-18 4.7E-23 147.6 12.5 135 3-138 12-224 (262)
17 1ixz_A ATP-dependent metallopr 99.8 2.6E-18 9E-23 146.1 13.6 135 3-138 22-231 (254)
18 2dhr_A FTSH; AAA+ protein, hex 99.8 1.5E-18 5E-23 162.3 11.4 156 3-159 37-271 (499)
19 2qp9_X Vacuolar protein sortin 99.8 1.5E-17 5E-22 149.2 17.2 132 3-137 57-262 (355)
20 1iy2_A ATP-dependent metallopr 99.7 1.3E-17 4.6E-22 143.9 14.1 135 3-138 46-255 (278)
21 3hu3_A Transitional endoplasmi 99.7 1.2E-17 4.2E-22 155.8 14.1 135 3-137 210-416 (489)
22 2zan_A Vacuolar protein sortin 99.7 3.4E-17 1.2E-21 151.0 15.8 132 3-137 140-346 (444)
23 3m6a_A ATP-dependent protease 99.7 2.3E-18 7.8E-23 162.6 7.7 187 22-236 98-380 (543)
24 2r62_A Cell division protease 99.7 6.8E-18 2.3E-22 144.4 6.9 135 3-138 17-228 (268)
25 1ypw_A Transitional endoplasmi 99.7 1.2E-18 4E-23 171.4 -3.5 134 4-137 484-692 (806)
26 3b9p_A CG5977-PA, isoform A; A 99.7 7.9E-16 2.7E-20 133.3 14.0 132 3-137 27-234 (297)
27 3vfd_A Spastin; ATPase, microt 99.6 1E-15 3.4E-20 138.4 13.2 132 3-137 121-327 (389)
28 3d8b_A Fidgetin-like protein 1 99.6 2E-15 6.7E-20 135.2 13.9 133 3-138 90-297 (357)
29 3t15_A Ribulose bisphosphate c 99.6 1.1E-15 3.6E-20 133.6 10.1 83 25-109 30-200 (293)
30 1ypw_A Transitional endoplasmi 99.6 1.6E-15 5.6E-20 149.1 10.6 135 3-137 210-416 (806)
31 1g41_A Heat shock protein HSLU 99.4 2.7E-13 9.3E-18 124.8 6.2 99 4-102 22-187 (444)
32 3syl_A Protein CBBX; photosynt 99.2 4.7E-11 1.6E-15 103.5 11.5 103 4-109 38-219 (309)
33 3pfi_A Holliday junction ATP-d 99.2 1.6E-10 5.5E-15 101.5 14.7 104 31-136 55-227 (338)
34 2c9o_A RUVB-like 1; hexameric 99.1 3.9E-11 1.4E-15 110.6 5.4 30 27-56 59-88 (456)
35 3pxg_A Negative regulator of g 99.1 8.1E-10 2.8E-14 102.2 13.0 76 31-109 201-340 (468)
36 1d2n_A N-ethylmaleimide-sensit 99.1 1.2E-09 4.1E-14 93.3 12.1 33 27-59 60-92 (272)
37 2r44_A Uncharacterized protein 99.1 1.6E-09 5.4E-14 95.1 12.7 77 31-109 46-200 (331)
38 3k1j_A LON protease, ATP-depen 99.0 4.2E-10 1.4E-14 107.2 8.7 42 15-56 42-85 (604)
39 1hqc_A RUVB; extended AAA-ATPa 99.0 1.3E-09 4.5E-14 94.8 10.4 105 31-137 38-212 (324)
40 2chg_A Replication factor C sm 99.0 2E-09 6.8E-14 87.2 10.8 73 33-108 40-175 (226)
41 3u61_B DNA polymerase accessor 99.0 3E-09 1E-13 92.9 11.9 74 30-106 47-177 (324)
42 1in4_A RUVB, holliday junction 99.0 8.9E-10 3E-14 97.4 8.3 75 32-108 52-194 (334)
43 1ofh_A ATP-dependent HSL prote 99.0 2.2E-09 7.4E-14 92.5 9.6 42 63-106 169-214 (310)
44 3uk6_A RUVB-like 2; hexameric 99.0 1.4E-09 4.8E-14 96.4 8.6 36 71-109 239-274 (368)
45 4fcw_A Chaperone protein CLPB; 99.0 2.7E-09 9.3E-14 92.2 10.0 45 62-108 160-230 (311)
46 1l8q_A Chromosomal replication 98.9 4.3E-09 1.5E-13 92.1 10.7 75 31-108 37-180 (324)
47 3pvs_A Replication-associated 98.9 3.3E-09 1.1E-13 97.8 10.3 74 32-108 51-179 (447)
48 1njg_A DNA polymerase III subu 98.9 3.8E-09 1.3E-13 86.4 9.3 44 62-108 156-199 (250)
49 1jbk_A CLPB protein; beta barr 98.9 1.1E-09 3.9E-14 86.7 5.8 39 62-103 151-194 (195)
50 1g8p_A Magnesium-chelatase 38 98.9 1.1E-08 3.6E-13 89.8 10.9 44 62-107 187-232 (350)
51 3bos_A Putative DNA replicatio 98.9 2E-09 6.7E-14 88.9 5.7 76 31-108 52-188 (242)
52 3pxi_A Negative regulator of g 98.9 1.8E-08 6E-13 98.2 12.7 76 30-108 200-339 (758)
53 3hws_A ATP-dependent CLP prote 98.8 2.7E-08 9.1E-13 88.6 11.9 30 30-59 50-79 (363)
54 2z4s_A Chromosomal replication 98.8 4.2E-09 1.4E-13 96.7 6.7 76 31-108 130-277 (440)
55 1z47_A CYSA, putative ABC-tran 98.8 6.1E-09 2.1E-13 93.3 6.1 56 19-77 27-84 (355)
56 3rlf_A Maltose/maltodextrin im 98.8 2.1E-09 7.1E-14 97.2 3.1 58 18-78 14-73 (381)
57 3tui_C Methionine import ATP-b 98.8 7.1E-09 2.4E-13 93.2 6.2 138 21-161 42-211 (366)
58 1r6b_X CLPA protein; AAA+, N-t 98.8 3.2E-08 1.1E-12 96.2 10.9 45 62-108 598-667 (758)
59 2it1_A 362AA long hypothetical 98.7 6.7E-09 2.3E-13 93.3 5.4 58 18-78 14-73 (362)
60 3pxi_A Negative regulator of g 98.7 4.3E-08 1.5E-12 95.5 11.0 74 33-108 523-676 (758)
61 3gfo_A Cobalt import ATP-bindi 98.7 7E-09 2.4E-13 89.8 4.3 49 21-72 22-72 (275)
62 3te6_A Regulatory protein SIR3 98.7 1.3E-07 4.5E-12 83.4 12.3 45 62-108 163-212 (318)
63 2chq_A Replication factor C sm 98.7 1.5E-07 5E-12 81.1 12.4 73 33-108 40-175 (319)
64 2pcj_A ABC transporter, lipopr 98.7 9.1E-09 3.1E-13 86.3 4.4 56 19-77 16-73 (224)
65 4g1u_C Hemin import ATP-bindin 98.7 3.2E-09 1.1E-13 91.5 1.3 61 18-81 22-84 (266)
66 1vpl_A ABC transporter, ATP-bi 98.7 6.6E-09 2.2E-13 89.0 3.3 53 19-74 27-81 (256)
67 3fvq_A Fe(3+) IONS import ATP- 98.7 3.8E-09 1.3E-13 94.7 1.7 53 17-72 14-68 (359)
68 3tif_A Uncharacterized ABC tra 98.7 7.9E-09 2.7E-13 87.3 3.6 55 21-78 19-75 (235)
69 1ji0_A ABC transporter; ATP bi 98.7 5.7E-09 1.9E-13 88.4 2.6 57 19-78 18-76 (240)
70 1v43_A Sugar-binding transport 98.7 5.1E-09 1.7E-13 94.4 2.1 57 19-78 23-81 (372)
71 3f9v_A Minichromosome maintena 98.7 2.1E-08 7.1E-13 95.5 6.2 73 33-108 329-491 (595)
72 2qby_B CDC6 homolog 3, cell di 98.7 6.1E-07 2.1E-11 79.4 15.4 45 62-108 164-211 (384)
73 1jr3_A DNA polymerase III subu 98.7 1.8E-07 6.2E-12 82.5 11.9 45 61-108 148-192 (373)
74 2p65_A Hypothetical protein PF 98.7 2.2E-08 7.4E-13 79.2 5.3 26 30-55 42-67 (187)
75 3nbx_X ATPase RAVA; AAA+ ATPas 98.7 8.6E-08 2.9E-12 89.5 10.1 43 63-107 150-196 (500)
76 1iqp_A RFCS; clamp loader, ext 98.7 8.9E-08 3E-12 82.8 9.6 73 33-108 48-183 (327)
77 2yyz_A Sugar ABC transporter, 98.6 6E-09 2.1E-13 93.5 2.0 58 18-78 14-73 (359)
78 3d31_A Sulfate/molybdate ABC t 98.6 2.1E-08 7.2E-13 89.6 5.4 54 22-78 15-70 (348)
79 1a5t_A Delta prime, HOLB; zinc 98.6 2.5E-07 8.5E-12 81.6 12.2 43 62-107 138-180 (334)
80 1sxj_A Activator 1 95 kDa subu 98.6 1.8E-07 6.2E-12 87.3 11.8 30 30-59 76-105 (516)
81 1b0u_A Histidine permease; ABC 98.6 2.6E-08 9.1E-13 85.4 5.5 51 19-72 18-70 (262)
82 1sxj_C Activator 1 40 kDa subu 98.6 6E-08 2E-12 85.5 7.9 71 34-107 49-182 (340)
83 1sxj_D Activator 1 41 kDa subu 98.6 1.5E-07 5.1E-12 82.4 10.3 43 62-107 163-205 (353)
84 1g29_1 MALK, maltose transport 98.6 7.6E-09 2.6E-13 93.2 2.0 54 18-74 14-69 (372)
85 2olj_A Amino acid ABC transpor 98.6 2.6E-08 8.8E-13 85.7 4.8 51 19-72 36-88 (263)
86 1oxx_K GLCV, glucose, ABC tran 98.6 9.5E-09 3.2E-13 92.0 2.0 49 22-73 20-70 (353)
87 1um8_A ATP-dependent CLP prote 98.6 3.7E-07 1.3E-11 81.5 12.3 30 30-59 71-100 (376)
88 2v1u_A Cell division control p 98.6 2.7E-07 9.3E-12 81.3 11.1 44 63-108 168-215 (387)
89 1qvr_A CLPB protein; coiled co 98.6 3.1E-07 1.1E-11 90.7 12.6 75 31-108 191-346 (854)
90 1g6h_A High-affinity branched- 98.6 1E-08 3.5E-13 87.7 1.6 57 18-77 18-76 (257)
91 3nh6_A ATP-binding cassette SU 98.6 8.1E-09 2.8E-13 90.7 0.3 58 21-81 68-127 (306)
92 2ff7_A Alpha-hemolysin translo 98.6 1.8E-08 6.2E-13 85.7 2.2 59 20-81 22-82 (247)
93 2ihy_A ABC transporter, ATP-bi 98.5 1.7E-08 5.9E-13 87.4 1.5 60 19-81 33-96 (279)
94 2yz2_A Putative ABC transporte 98.5 2.9E-08 9.8E-13 85.3 2.8 49 21-72 21-71 (266)
95 1sgw_A Putative ABC transporte 98.5 6.6E-08 2.3E-12 80.6 4.8 49 21-72 23-73 (214)
96 1r6b_X CLPA protein; AAA+, N-t 98.5 4.6E-07 1.6E-11 88.1 11.0 43 62-107 315-362 (758)
97 1sxj_B Activator 1 37 kDa subu 98.5 4.3E-07 1.5E-11 78.3 9.6 72 34-108 45-180 (323)
98 2d2e_A SUFC protein; ABC-ATPas 98.5 3.6E-08 1.2E-12 83.9 2.5 59 19-80 15-77 (250)
99 3gd7_A Fusion complex of cysti 98.5 2.3E-08 7.8E-13 90.7 1.3 58 20-81 34-93 (390)
100 1fnn_A CDC6P, cell division co 98.5 2.1E-06 7.2E-11 75.8 13.9 45 62-108 159-207 (389)
101 1sxj_E Activator 1 40 kDa subu 98.5 5.6E-07 1.9E-11 79.0 9.6 73 62-137 164-238 (354)
102 2qby_A CDC6 homolog 1, cell di 98.5 1.5E-06 5.1E-11 76.4 12.1 45 62-108 163-211 (386)
103 4akg_A Glutathione S-transfera 98.5 2E-07 7E-12 100.9 7.6 44 62-108 1384-1432(2695)
104 2zu0_C Probable ATP-dependent 98.4 7.3E-08 2.5E-12 82.9 3.2 59 19-80 32-94 (267)
105 3vaa_A Shikimate kinase, SK; s 98.4 3.2E-07 1.1E-11 74.7 6.1 38 22-59 14-53 (199)
106 3b5x_A Lipid A export ATP-bind 98.4 3.3E-07 1.1E-11 86.9 6.6 59 20-81 356-416 (582)
107 2gno_A DNA polymerase III, gam 98.3 7.8E-07 2.7E-11 77.9 7.4 71 32-107 19-152 (305)
108 1tue_A Replication protein E1; 98.3 1E-06 3.5E-11 73.1 7.7 29 28-56 55-83 (212)
109 1mv5_A LMRA, multidrug resista 98.3 7.6E-08 2.6E-12 81.5 0.8 54 20-76 15-70 (243)
110 2ghi_A Transport protein; mult 98.3 1.1E-07 3.7E-12 81.4 1.7 57 21-81 34-92 (260)
111 1u0j_A DNA replication protein 98.3 2.4E-06 8.4E-11 73.5 10.1 26 30-55 103-128 (267)
112 1qvr_A CLPB protein; coiled co 98.3 7.5E-07 2.6E-11 88.0 7.9 33 74-108 739-771 (854)
113 2pjz_A Hypothetical protein ST 98.3 6.1E-08 2.1E-12 83.3 -0.3 48 20-72 18-67 (263)
114 2ixe_A Antigen peptide transpo 98.3 1.5E-07 5.2E-12 81.0 2.1 58 20-80 32-91 (271)
115 2yl4_A ATP-binding cassette SU 98.3 1.6E-07 5.5E-12 89.2 2.1 57 22-81 359-417 (595)
116 1svm_A Large T antigen; AAA+ f 98.3 1.8E-07 6E-12 84.5 2.1 72 21-93 157-284 (377)
117 1htw_A HI0065; nucleotide-bind 98.3 3E-07 1E-11 73.0 3.1 41 17-58 17-59 (158)
118 2qi9_C Vitamin B12 import ATP- 98.3 1.5E-07 5E-12 80.2 0.9 56 21-80 14-71 (249)
119 2onk_A Molybdate/tungstate ABC 98.3 6.1E-07 2.1E-11 76.0 4.4 49 23-74 15-64 (240)
120 3ec2_A DNA replication protein 98.2 5E-07 1.7E-11 72.1 3.2 45 6-56 19-63 (180)
121 3b60_A Lipid A export ATP-bind 98.2 3.6E-07 1.2E-11 86.6 2.6 58 21-81 357-416 (582)
122 4a82_A Cystic fibrosis transme 98.2 2.3E-07 8E-12 87.9 1.1 58 21-81 355-414 (578)
123 3qf4_B Uncharacterized ABC tra 98.2 2.3E-07 7.8E-12 88.3 0.8 58 21-81 369-428 (598)
124 3qf4_A ABC transporter, ATP-bi 98.2 3.2E-07 1.1E-11 87.1 1.2 58 21-81 357-416 (587)
125 3b9q_A Chloroplast SRP recepto 98.2 1.9E-06 6.6E-11 75.3 6.0 65 6-73 73-139 (302)
126 3co5_A Putative two-component 98.2 1.5E-06 5.2E-11 67.2 4.5 26 31-56 27-52 (143)
127 2bjv_A PSP operon transcriptio 98.2 4.6E-06 1.6E-10 70.5 7.8 26 31-56 29-54 (265)
128 2pze_A Cystic fibrosis transme 98.1 5.7E-07 2E-11 75.4 1.7 45 20-67 21-67 (229)
129 2cbz_A Multidrug resistance-as 98.1 5.1E-07 1.7E-11 76.2 0.6 39 20-58 18-58 (237)
130 1z6g_A Guanylate kinase; struc 98.1 1.6E-06 5.3E-11 72.0 3.5 35 21-55 11-47 (218)
131 2nq2_C Hypothetical ABC transp 98.1 7.5E-07 2.6E-11 75.9 1.1 45 19-66 17-63 (253)
132 1ojl_A Transcriptional regulat 98.0 1.1E-05 3.7E-10 70.3 8.2 25 31-55 25-49 (304)
133 2og2_A Putative signal recogni 98.0 5.4E-06 1.9E-10 74.2 6.3 34 25-58 149-184 (359)
134 3nwj_A ATSK2; P loop, shikimat 98.0 1.4E-06 4.8E-11 74.2 2.1 42 18-59 30-76 (250)
135 2jeo_A Uridine-cytidine kinase 98.0 2.9E-06 1E-10 71.3 3.5 39 19-57 11-51 (245)
136 2yhs_A FTSY, cell division pro 97.9 9E-06 3.1E-10 75.7 5.9 35 24-58 284-320 (503)
137 1kag_A SKI, shikimate kinase I 97.9 5.6E-06 1.9E-10 65.2 3.8 27 32-58 5-31 (173)
138 2bbs_A Cystic fibrosis transme 97.9 1.4E-06 4.7E-11 75.9 0.2 39 20-58 51-91 (290)
139 2v9p_A Replication protein E1; 97.9 4.2E-06 1.4E-10 73.4 2.9 36 20-55 113-150 (305)
140 3e70_C DPA, signal recognition 97.9 2.4E-05 8.1E-10 69.2 7.6 38 34-74 132-169 (328)
141 4f4c_A Multidrug resistance pr 97.9 1.6E-06 5.5E-11 89.3 0.1 61 21-85 1093-1155(1321)
142 3g5u_A MCG1178, multidrug resi 97.9 2.4E-06 8.1E-11 87.9 1.1 58 21-81 404-463 (1284)
143 4f4c_A Multidrug resistance pr 97.9 3.1E-06 1.1E-10 87.2 1.9 58 21-81 432-491 (1321)
144 4akg_A Glutathione S-transfera 97.9 0.0002 6.9E-09 78.0 15.6 73 30-105 644-791 (2695)
145 2w58_A DNAI, primosome compone 97.9 8.8E-06 3E-10 65.8 4.0 27 32-58 55-81 (202)
146 3n70_A Transport activator; si 97.9 1.3E-05 4.6E-10 61.8 4.9 28 31-58 24-51 (145)
147 1y63_A LMAJ004144AAA protein; 97.9 7.6E-06 2.6E-10 65.7 3.4 33 26-58 3-38 (184)
148 2dpy_A FLII, flagellum-specifi 97.9 1.8E-05 6.2E-10 72.6 6.3 48 19-70 144-193 (438)
149 3trf_A Shikimate kinase, SK; a 97.8 9.2E-06 3.2E-10 64.7 3.7 28 31-58 5-32 (185)
150 3tr0_A Guanylate kinase, GMP k 97.8 9.2E-06 3.1E-10 65.6 3.7 23 34-56 10-32 (205)
151 1qhx_A CPT, protein (chloramph 97.8 9.6E-06 3.3E-10 64.1 3.6 26 33-58 5-30 (178)
152 1zp6_A Hypothetical protein AT 97.8 1E-05 3.5E-10 64.7 3.8 23 33-55 11-33 (191)
153 2qm8_A GTPase/ATPase; G protei 97.8 1.1E-05 3.7E-10 71.5 4.2 50 20-72 42-93 (337)
154 4gp7_A Metallophosphoesterase; 97.8 5.7E-06 1.9E-10 65.8 2.1 26 26-51 2-29 (171)
155 3kb2_A SPBC2 prophage-derived 97.8 1E-05 3.5E-10 63.2 3.4 26 34-59 4-29 (173)
156 2rhm_A Putative kinase; P-loop 97.8 1.2E-05 4.1E-10 64.2 3.7 28 31-58 5-32 (193)
157 4eun_A Thermoresistant glucoki 97.8 1.1E-05 3.8E-10 65.5 3.4 23 34-56 32-54 (200)
158 2gza_A Type IV secretion syste 97.8 7.9E-06 2.7E-10 73.0 2.6 44 22-68 164-209 (361)
159 2eyu_A Twitching motility prot 97.8 1.1E-05 3.8E-10 68.9 3.2 37 21-57 15-51 (261)
160 3uie_A Adenylyl-sulfate kinase 97.8 7.4E-06 2.5E-10 66.5 2.0 23 34-56 28-50 (200)
161 1via_A Shikimate kinase; struc 97.8 1.3E-05 4.4E-10 63.5 3.3 26 33-58 6-31 (175)
162 2obl_A ESCN; ATPase, hydrolase 97.8 2.5E-05 8.5E-10 69.5 5.3 47 19-69 58-106 (347)
163 3a00_A Guanylate kinase, GMP k 97.7 1.7E-05 5.9E-10 63.7 3.8 26 33-58 3-28 (186)
164 1ye8_A Protein THEP1, hypothet 97.7 1.5E-05 5E-10 64.2 3.2 25 34-58 3-27 (178)
165 3lnc_A Guanylate kinase, GMP k 97.7 8.8E-06 3E-10 67.5 1.9 34 22-55 16-52 (231)
166 1knq_A Gluconate kinase; ALFA/ 97.7 2E-05 6.7E-10 62.2 3.8 24 34-57 11-34 (175)
167 1znw_A Guanylate kinase, GMP k 97.7 1.8E-05 6.3E-10 64.6 3.7 28 29-56 16-45 (207)
168 3iij_A Coilin-interacting nucl 97.7 2.3E-05 7.9E-10 62.2 4.0 29 31-59 11-39 (180)
169 3tqc_A Pantothenate kinase; bi 97.7 5.9E-05 2E-09 66.4 6.9 24 34-57 95-118 (321)
170 3c8u_A Fructokinase; YP_612366 97.7 4.1E-05 1.4E-09 62.5 5.5 24 34-57 25-48 (208)
171 1gvn_B Zeta; postsegregational 97.7 5.3E-05 1.8E-09 65.4 6.4 24 33-56 35-58 (287)
172 2pt7_A CAG-ALFA; ATPase, prote 97.7 1.3E-05 4.4E-10 70.8 2.5 45 22-69 160-206 (330)
173 1sq5_A Pantothenate kinase; P- 97.7 6.7E-05 2.3E-09 65.3 6.8 26 31-56 78-105 (308)
174 1s96_A Guanylate kinase, GMP k 97.7 2.6E-05 8.8E-10 64.9 3.9 40 30-71 15-55 (219)
175 2ehv_A Hypothetical protein PH 97.7 2.2E-05 7.4E-10 65.1 3.5 26 28-53 27-52 (251)
176 2iyv_A Shikimate kinase, SK; t 97.7 2.6E-05 9E-10 62.0 3.7 26 33-58 4-29 (184)
177 3kta_A Chromosome segregation 97.7 1.8E-05 6E-10 62.9 2.5 34 24-57 18-52 (182)
178 2qgz_A Helicase loader, putati 97.7 3.2E-05 1.1E-09 67.5 4.4 26 31-56 152-177 (308)
179 1cr0_A DNA primase/helicase; R 97.7 2.1E-05 7.3E-10 67.6 3.2 38 21-58 23-62 (296)
180 3lw7_A Adenylate kinase relate 97.6 2.5E-05 8.5E-10 60.7 3.3 24 34-58 4-27 (179)
181 4a74_A DNA repair and recombin 97.6 3.8E-05 1.3E-09 62.8 4.6 28 30-57 22-51 (231)
182 3cm0_A Adenylate kinase; ATP-b 97.6 2.5E-05 8.5E-10 62.1 3.3 25 34-58 7-31 (186)
183 2kjq_A DNAA-related protein; s 97.6 1.9E-05 6.7E-10 61.6 2.5 29 30-58 35-63 (149)
184 2j41_A Guanylate kinase; GMP, 97.6 2.8E-05 9.5E-10 62.7 3.5 25 33-57 8-32 (207)
185 3t61_A Gluconokinase; PSI-biol 97.6 2.7E-05 9.3E-10 63.0 3.4 26 33-58 20-45 (202)
186 1lvg_A Guanylate kinase, GMP k 97.6 2.8E-05 9.4E-10 63.3 3.5 26 31-56 4-29 (198)
187 1tf7_A KAIC; homohexamer, hexa 97.6 1.7E-05 5.9E-10 74.1 2.5 50 19-71 24-78 (525)
188 3g5u_A MCG1178, multidrug resi 97.6 2.5E-05 8.5E-10 80.3 3.6 61 22-86 1048-1110(1284)
189 1zuh_A Shikimate kinase; alpha 97.6 3.3E-05 1.1E-09 60.6 3.5 25 34-58 10-34 (168)
190 1kgd_A CASK, peripheral plasma 97.6 4E-05 1.4E-09 61.3 4.0 25 33-57 7-31 (180)
191 1p9r_A General secretion pathw 97.6 5.7E-05 2E-09 68.9 5.4 36 22-58 158-194 (418)
192 2w0m_A SSO2452; RECA, SSPF, un 97.6 3.9E-05 1.3E-09 62.6 3.9 27 30-56 20-48 (235)
193 1cke_A CK, MSSA, protein (cyti 97.6 3.1E-05 1E-09 63.5 3.3 27 33-59 7-33 (227)
194 2p5t_B PEZT; postsegregational 97.6 6.2E-05 2.1E-09 63.5 5.3 25 32-56 33-57 (253)
195 1vma_A Cell division protein F 97.6 7.4E-05 2.5E-09 65.3 5.8 51 5-58 79-131 (306)
196 1e6c_A Shikimate kinase; phosp 97.6 3.4E-05 1.2E-09 60.5 3.3 26 33-58 4-29 (173)
197 2ze6_A Isopentenyl transferase 97.6 3.5E-05 1.2E-09 65.2 3.5 25 34-58 4-28 (253)
198 1ly1_A Polynucleotide kinase; 97.6 2.9E-05 9.9E-10 61.1 2.8 21 33-53 4-24 (181)
199 1n0w_A DNA repair protein RAD5 97.6 0.00015 5.1E-09 59.7 7.1 41 31-71 24-68 (243)
200 3b85_A Phosphate starvation-in 97.6 2.6E-05 8.9E-10 64.4 2.4 28 34-63 25-52 (208)
201 1qf9_A UMP/CMP kinase, protein 97.6 4.1E-05 1.4E-09 60.8 3.4 27 32-58 7-33 (194)
202 3tau_A Guanylate kinase, GMP k 97.6 5E-05 1.7E-09 62.1 4.1 24 34-57 11-34 (208)
203 1kht_A Adenylate kinase; phosp 97.6 3E-05 1E-09 61.6 2.6 24 33-56 5-28 (192)
204 1tev_A UMP-CMP kinase; ploop, 97.5 4.2E-05 1.4E-09 60.8 3.3 26 33-58 5-30 (196)
205 1ex7_A Guanylate kinase; subst 97.5 5.1E-05 1.7E-09 61.7 3.8 39 32-72 2-40 (186)
206 2bdt_A BH3686; alpha-beta prot 97.5 4.5E-05 1.5E-09 61.0 3.4 21 34-54 5-25 (189)
207 2cdn_A Adenylate kinase; phosp 97.5 4.6E-05 1.6E-09 61.6 3.5 25 34-58 23-47 (201)
208 2bbw_A Adenylate kinase 4, AK4 97.5 4.6E-05 1.6E-09 63.8 3.6 27 32-58 28-54 (246)
209 2c95_A Adenylate kinase 1; tra 97.5 3.9E-05 1.3E-09 61.3 2.9 26 33-58 11-36 (196)
210 3dl0_A Adenylate kinase; phosp 97.5 5.1E-05 1.8E-09 61.9 3.6 25 34-58 3-27 (216)
211 1rz3_A Hypothetical protein rb 97.5 0.00013 4.6E-09 59.1 6.1 25 34-58 25-49 (201)
212 2vli_A Antibiotic resistance p 97.5 3.5E-05 1.2E-09 61.0 2.5 25 34-58 8-32 (183)
213 1jjv_A Dephospho-COA kinase; P 97.5 4.9E-05 1.7E-09 61.6 3.4 24 34-58 5-28 (206)
214 2oap_1 GSPE-2, type II secreti 97.5 4.3E-05 1.5E-09 71.4 3.4 45 20-67 247-293 (511)
215 2pt5_A Shikimate kinase, SK; a 97.5 5.5E-05 1.9E-09 59.0 3.5 25 34-58 3-27 (168)
216 3asz_A Uridine kinase; cytidin 97.5 3.9E-05 1.3E-09 62.4 2.7 23 34-56 9-31 (211)
217 3fb4_A Adenylate kinase; psych 97.5 5.2E-05 1.8E-09 61.8 3.5 25 34-58 3-27 (216)
218 2i3b_A HCR-ntpase, human cance 97.5 2.3E-05 7.8E-10 63.8 1.3 23 34-56 4-26 (189)
219 2qor_A Guanylate kinase; phosp 97.5 6.9E-05 2.4E-09 60.9 4.1 29 28-56 9-37 (204)
220 1aky_A Adenylate kinase; ATP:A 97.5 5.2E-05 1.8E-09 62.2 3.3 25 34-58 7-31 (220)
221 3vkg_A Dynein heavy chain, cyt 97.5 0.00017 5.8E-09 79.3 8.1 43 62-107 1422-1469(3245)
222 1lw7_A Transcriptional regulat 97.5 6.3E-05 2.2E-09 66.9 4.0 36 23-58 158-197 (365)
223 2jaq_A Deoxyguanosine kinase; 97.5 5.4E-05 1.9E-09 60.7 3.3 25 34-58 3-27 (205)
224 2ewv_A Twitching motility prot 97.5 4.2E-05 1.5E-09 68.6 2.9 37 21-57 126-162 (372)
225 1rj9_A FTSY, signal recognitio 97.5 7.6E-05 2.6E-09 65.2 4.4 37 34-73 105-141 (304)
226 2bwj_A Adenylate kinase 5; pho 97.5 4.9E-05 1.7E-09 60.8 2.9 27 32-58 13-39 (199)
227 3euj_A Chromosome partition pr 97.5 3.2E-05 1.1E-09 71.7 2.0 37 22-58 19-56 (483)
228 2cvh_A DNA repair and recombin 97.5 0.00011 3.9E-09 59.5 4.9 38 28-70 17-54 (220)
229 2if2_A Dephospho-COA kinase; a 97.5 5.6E-05 1.9E-09 61.1 3.0 24 34-58 4-27 (204)
230 3umf_A Adenylate kinase; rossm 97.5 7.6E-05 2.6E-09 62.2 3.8 29 30-58 28-56 (217)
231 3ney_A 55 kDa erythrocyte memb 97.4 8E-05 2.7E-09 61.1 3.9 29 28-56 14-44 (197)
232 1nks_A Adenylate kinase; therm 97.4 4.3E-05 1.5E-09 60.6 2.2 24 34-57 4-27 (194)
233 1zak_A Adenylate kinase; ATP:A 97.4 6.8E-05 2.3E-09 61.6 3.4 26 33-58 7-32 (222)
234 3aez_A Pantothenate kinase; tr 97.4 5.8E-05 2E-09 66.1 3.1 29 30-58 87-117 (312)
235 1zd8_A GTP:AMP phosphotransfer 97.4 6E-05 2E-09 62.2 3.0 26 33-58 9-34 (227)
236 1zu4_A FTSY; GTPase, signal re 97.4 0.00016 5.5E-09 63.5 5.7 35 24-58 96-132 (320)
237 3sr0_A Adenylate kinase; phosp 97.4 7.4E-05 2.5E-09 61.6 3.3 26 34-59 3-28 (206)
238 2plr_A DTMP kinase, probable t 97.4 7.9E-05 2.7E-09 60.0 3.4 25 34-58 7-31 (213)
239 4e22_A Cytidylate kinase; P-lo 97.4 7.8E-05 2.7E-09 62.9 3.5 26 34-59 30-55 (252)
240 1yqt_A RNAse L inhibitor; ATP- 97.4 7E-05 2.4E-09 70.4 3.4 36 22-58 37-74 (538)
241 2npi_A Protein CLP1; CLP1-PCF1 97.4 2.9E-05 1E-09 71.6 0.9 35 24-58 129-165 (460)
242 1ukz_A Uridylate kinase; trans 97.4 8.3E-05 2.8E-09 60.0 3.4 25 34-58 18-42 (203)
243 3be4_A Adenylate kinase; malar 97.4 7.2E-05 2.4E-09 61.5 2.9 25 34-58 8-32 (217)
244 1ak2_A Adenylate kinase isoenz 97.4 8.2E-05 2.8E-09 61.8 3.3 26 33-58 18-43 (233)
245 3kw6_A 26S protease regulatory 97.4 7.4E-05 2.5E-09 51.8 2.5 69 92-160 1-74 (78)
246 1e4v_A Adenylate kinase; trans 97.4 8.4E-05 2.9E-09 60.8 3.1 25 34-58 3-27 (214)
247 3jvv_A Twitching mobility prot 97.4 7.6E-05 2.6E-09 66.6 3.0 28 31-58 122-150 (356)
248 3sop_A Neuronal-specific septi 97.4 8E-05 2.7E-09 63.9 3.0 25 34-58 5-29 (270)
249 2dr3_A UPF0273 protein PH0284; 97.4 0.00012 4E-09 60.4 3.9 41 28-70 20-60 (247)
250 2pbr_A DTMP kinase, thymidylat 97.3 0.00011 3.8E-09 58.3 3.4 22 34-55 3-24 (195)
251 2xb4_A Adenylate kinase; ATP-b 97.3 0.00011 3.7E-09 60.8 3.3 25 34-58 3-27 (223)
252 2pez_A Bifunctional 3'-phospho 97.3 0.00013 4.4E-09 57.8 3.5 22 34-55 8-29 (179)
253 2z0h_A DTMP kinase, thymidylat 97.3 0.00012 4.2E-09 58.4 3.4 22 34-55 3-24 (197)
254 2yvu_A Probable adenylyl-sulfa 97.3 0.00015 5E-09 57.8 3.8 25 34-58 16-40 (186)
255 3hr8_A Protein RECA; alpha and 97.3 0.00034 1.2E-08 62.5 6.4 24 34-57 64-87 (356)
256 3ozx_A RNAse L inhibitor; ATP 97.3 0.0001 3.4E-09 69.3 3.0 36 23-58 14-52 (538)
257 3tlx_A Adenylate kinase 2; str 97.3 0.00015 5E-09 60.9 3.7 27 32-58 30-56 (243)
258 3cmw_A Protein RECA, recombina 97.3 0.00016 5.5E-09 75.8 4.7 29 30-58 1079-1109(1706)
259 3ake_A Cytidylate kinase; CMP 97.3 0.00014 4.9E-09 58.5 3.5 27 33-59 4-30 (208)
260 2iw3_A Elongation factor 3A; a 97.3 4E-05 1.4E-09 76.5 0.1 45 21-68 687-733 (986)
261 3ozx_A RNAse L inhibitor; ATP 97.3 6.6E-05 2.3E-09 70.6 1.6 30 29-58 290-321 (538)
262 1q3t_A Cytidylate kinase; nucl 97.3 0.00014 5E-09 60.4 3.5 26 34-59 19-44 (236)
263 1pzn_A RAD51, DNA repair and r 97.3 0.00026 8.8E-09 62.9 5.3 30 27-56 125-156 (349)
264 3r20_A Cytidylate kinase; stru 97.3 0.00013 4.6E-09 61.3 3.3 27 33-59 11-37 (233)
265 2wwf_A Thymidilate kinase, put 97.3 0.00012 4.1E-09 59.2 2.9 25 34-58 13-37 (212)
266 2ga8_A Hypothetical 39.9 kDa p 97.2 7.1E-05 2.4E-09 66.9 1.4 27 33-59 26-52 (359)
267 1yqt_A RNAse L inhibitor; ATP- 97.2 8.3E-05 2.8E-09 69.9 1.7 31 28-58 307-339 (538)
268 3bk7_A ABC transporter ATP-bin 97.2 0.00013 4.3E-09 69.6 2.9 36 22-58 107-144 (607)
269 4eaq_A DTMP kinase, thymidylat 97.2 0.00019 6.4E-09 59.9 3.6 26 32-57 25-52 (229)
270 1qhl_A Protein (cell division 97.2 3.1E-05 1E-09 65.0 -1.3 25 34-58 30-54 (227)
271 2qt1_A Nicotinamide riboside k 97.2 0.00017 5.9E-09 58.4 3.2 27 29-55 17-45 (207)
272 3a4m_A L-seryl-tRNA(SEC) kinas 97.2 0.0002 6.8E-09 60.7 3.7 22 34-55 7-28 (260)
273 2px0_A Flagellar biosynthesis 97.2 0.00044 1.5E-08 60.0 5.9 24 34-57 108-131 (296)
274 1nn5_A Similar to deoxythymidy 97.2 0.00014 5E-09 58.7 2.6 26 33-58 11-36 (215)
275 2zr9_A Protein RECA, recombina 97.2 0.00056 1.9E-08 60.8 6.6 35 34-70 64-98 (349)
276 2v54_A DTMP kinase, thymidylat 97.2 0.00024 8.3E-09 57.0 3.9 22 34-55 7-28 (204)
277 3bk7_A ABC transporter ATP-bin 97.2 9.4E-05 3.2E-09 70.5 1.7 31 28-58 377-409 (607)
278 2qag_B Septin-6, protein NEDD5 97.2 0.00011 3.7E-09 67.2 1.9 33 23-55 30-66 (427)
279 3j16_B RLI1P; ribosome recycli 97.2 0.00011 3.9E-09 70.0 2.1 36 23-58 363-405 (608)
280 2iw3_A Elongation factor 3A; a 97.2 7.1E-05 2.4E-09 74.8 0.4 34 20-53 448-483 (986)
281 1uf9_A TT1252 protein; P-loop, 97.2 0.00023 8E-09 57.0 3.4 24 34-58 11-34 (203)
282 1vht_A Dephospho-COA kinase; s 97.1 0.00024 8.3E-09 58.0 3.4 25 33-58 6-30 (218)
283 3zvl_A Bifunctional polynucleo 97.1 0.00059 2E-08 61.9 6.1 26 34-59 261-286 (416)
284 4b3f_X DNA-binding protein smu 97.1 0.00035 1.2E-08 66.8 4.7 36 34-71 208-244 (646)
285 3vkg_A Dynein heavy chain, cyt 97.1 0.0015 5.1E-08 72.1 9.8 75 31-108 604-754 (3245)
286 1ls1_A Signal recognition part 97.1 0.00075 2.6E-08 58.4 6.2 35 24-58 91-125 (295)
287 2grj_A Dephospho-COA kinase; T 97.1 0.00028 9.5E-09 57.4 3.3 25 34-58 15-39 (192)
288 1m7g_A Adenylylsulfate kinase; 97.1 0.00031 1.1E-08 57.2 3.6 25 32-56 26-50 (211)
289 1nlf_A Regulatory protein REPA 97.1 0.00021 7.1E-09 60.9 2.6 29 27-55 26-54 (279)
290 2ffh_A Protein (FFH); SRP54, s 97.1 0.00089 3E-08 61.1 6.9 50 7-58 76-125 (425)
291 1f2t_A RAD50 ABC-ATPase; DNA d 97.1 0.00019 6.6E-09 55.9 2.0 28 28-55 19-47 (149)
292 3upu_A ATP-dependent DNA helic 97.1 0.00069 2.4E-08 62.0 6.0 38 33-70 47-84 (459)
293 2vhj_A Ntpase P4, P4; non- hyd 97.1 0.00019 6.6E-09 63.3 2.2 27 28-54 120-146 (331)
294 2f1r_A Molybdopterin-guanine d 97.1 0.00011 3.9E-09 58.7 0.7 44 33-76 4-47 (171)
295 3j16_B RLI1P; ribosome recycli 97.0 0.00033 1.1E-08 66.7 3.9 29 30-58 100-130 (608)
296 1uj2_A Uridine-cytidine kinase 97.0 0.00032 1.1E-08 58.9 3.3 25 34-58 25-49 (252)
297 4aby_A DNA repair protein RECN 97.0 6E-05 2E-09 67.7 -1.6 39 19-57 47-86 (415)
298 3crm_A TRNA delta(2)-isopenten 97.0 0.00033 1.1E-08 61.7 3.2 27 32-58 6-32 (323)
299 1u94_A RECA protein, recombina 97.0 0.0012 4.1E-08 58.8 6.9 41 28-70 60-100 (356)
300 3qf7_A RAD50; ABC-ATPase, ATPa 97.0 0.0002 6.8E-09 63.9 1.8 33 23-55 14-47 (365)
301 1j8m_F SRP54, signal recogniti 97.0 0.00078 2.7E-08 58.5 5.5 33 26-58 92-125 (297)
302 1odf_A YGR205W, hypothetical 3 97.0 0.00042 1.4E-08 60.0 3.7 24 34-57 34-57 (290)
303 2h92_A Cytidylate kinase; ross 97.0 0.00043 1.5E-08 56.4 3.5 26 33-58 5-30 (219)
304 3kl4_A SRP54, signal recogniti 97.0 0.00076 2.6E-08 61.7 5.3 25 34-58 100-124 (433)
305 1v5w_A DMC1, meiotic recombina 96.9 0.0011 3.7E-08 58.6 5.9 42 30-71 119-166 (343)
306 1u0l_A Probable GTPase ENGC; p 96.9 0.00045 1.6E-08 59.8 3.3 31 34-67 172-202 (301)
307 1gtv_A TMK, thymidylate kinase 96.9 0.00017 6E-09 58.3 0.5 25 34-58 3-27 (214)
308 2o5v_A DNA replication and rep 96.9 0.00027 9.3E-09 63.1 1.7 34 22-55 16-50 (359)
309 3dm5_A SRP54, signal recogniti 96.9 0.0012 4.3E-08 60.4 6.0 26 33-58 102-127 (443)
310 2krk_A 26S protease regulatory 96.9 0.00044 1.5E-08 49.1 2.4 49 90-138 7-56 (86)
311 1ltq_A Polynucleotide kinase; 96.9 0.00052 1.8E-08 58.7 3.3 23 33-55 4-26 (301)
312 2p67_A LAO/AO transport system 96.9 0.00063 2.2E-08 60.0 3.8 36 21-56 44-81 (341)
313 3lda_A DNA repair protein RAD5 96.9 0.00092 3.1E-08 60.5 5.0 21 34-54 181-201 (400)
314 2qnr_A Septin-2, protein NEDD5 96.8 0.00028 9.4E-09 61.3 1.2 35 16-54 7-41 (301)
315 3ux8_A Excinuclease ABC, A sub 96.8 0.00023 8E-09 68.3 0.7 29 20-48 31-61 (670)
316 2gk6_A Regulator of nonsense t 96.8 0.0013 4.5E-08 62.6 5.8 38 33-70 197-234 (624)
317 2qmh_A HPR kinase/phosphorylas 96.8 0.001 3.6E-08 54.7 4.4 26 31-56 34-59 (205)
318 1tf7_A KAIC; homohexamer, hexa 96.8 0.00084 2.9E-08 62.5 4.3 32 27-58 275-308 (525)
319 1pui_A ENGB, probable GTP-bind 96.8 0.00027 9.3E-09 56.8 0.8 32 22-55 17-50 (210)
320 3qks_A DNA double-strand break 96.8 0.00044 1.5E-08 56.5 2.0 29 28-56 19-48 (203)
321 2f9l_A RAB11B, member RAS onco 96.8 0.0007 2.4E-08 54.2 3.2 23 33-55 7-29 (199)
322 1oix_A RAS-related protein RAB 96.8 0.00063 2.2E-08 54.3 2.9 23 34-56 32-54 (191)
323 3e1s_A Exodeoxyribonuclease V, 96.8 0.0011 3.9E-08 62.6 5.1 24 33-56 206-229 (574)
324 2zts_A Putative uncharacterize 96.8 0.00049 1.7E-08 56.6 2.2 27 28-54 27-53 (251)
325 2vp4_A Deoxynucleoside kinase; 96.8 0.00055 1.9E-08 56.7 2.4 26 29-54 16-43 (230)
326 1np6_A Molybdopterin-guanine d 96.8 0.00087 3E-08 53.7 3.5 25 32-56 7-31 (174)
327 1xp8_A RECA protein, recombina 96.7 0.0023 7.9E-08 57.2 6.6 37 32-70 75-111 (366)
328 2f6r_A COA synthase, bifunctio 96.7 0.00063 2.2E-08 58.3 2.8 24 34-58 78-101 (281)
329 2z43_A DNA repair and recombin 96.7 0.0013 4.6E-08 57.4 4.7 44 28-71 104-151 (324)
330 1xjc_A MOBB protein homolog; s 96.7 0.00099 3.4E-08 53.3 3.5 24 33-56 6-29 (169)
331 1f6b_A SAR1; gtpases, N-termin 96.7 0.00093 3.2E-08 53.6 3.3 33 21-53 14-47 (198)
332 3ice_A Transcription terminati 96.7 0.00085 2.9E-08 60.7 3.4 32 25-56 166-199 (422)
333 3fdi_A Uncharacterized protein 96.7 0.00093 3.2E-08 54.5 3.3 29 33-61 8-36 (201)
334 3cr8_A Sulfate adenylyltranfer 96.7 0.00061 2.1E-08 64.2 2.5 29 30-58 366-396 (552)
335 3ux8_A Excinuclease ABC, A sub 96.7 0.00026 8.9E-09 68.0 -0.2 31 22-52 337-369 (670)
336 3gmt_A Adenylate kinase; ssgci 96.7 0.0011 3.6E-08 55.7 3.5 26 34-59 11-36 (230)
337 1m2o_B GTP-binding protein SAR 96.7 0.00087 3E-08 53.3 2.9 33 22-54 13-46 (190)
338 1tq4_A IIGP1, interferon-induc 96.7 0.00082 2.8E-08 61.1 3.0 25 34-58 72-96 (413)
339 3io5_A Recombination and repai 96.6 0.0034 1.1E-07 55.3 6.8 64 34-99 31-96 (333)
340 3cmu_A Protein RECA, recombina 96.6 0.00098 3.4E-08 70.9 3.9 41 28-70 1424-1464(2050)
341 2yv5_A YJEQ protein; hydrolase 96.6 0.001 3.5E-08 57.7 3.3 24 34-58 168-191 (302)
342 2www_A Methylmalonic aciduria 96.6 0.0011 3.8E-08 58.7 3.5 23 34-56 77-99 (349)
343 3qkt_A DNA double-strand break 96.6 0.00065 2.2E-08 59.8 1.8 29 27-55 18-47 (339)
344 3tqf_A HPR(Ser) kinase; transf 96.6 0.0018 6.1E-08 52.2 4.2 24 31-54 16-39 (181)
345 3a8t_A Adenylate isopentenyltr 96.6 0.00092 3.1E-08 59.2 2.7 26 33-58 42-67 (339)
346 2rcn_A Probable GTPase ENGC; Y 96.6 0.0011 3.7E-08 59.2 3.2 25 34-58 218-243 (358)
347 3d3q_A TRNA delta(2)-isopenten 96.5 0.0013 4.4E-08 58.3 3.5 25 32-56 8-32 (340)
348 3f8t_A Predicted ATPase involv 96.5 0.0018 6.3E-08 59.9 4.5 34 62-97 339-384 (506)
349 1c9k_A COBU, adenosylcobinamid 96.5 0.001 3.5E-08 53.7 2.6 32 34-70 2-33 (180)
350 1e69_A Chromosome segregation 96.5 0.00069 2.4E-08 59.1 1.5 31 26-56 18-49 (322)
351 3szr_A Interferon-induced GTP- 96.5 0.0015 5.2E-08 62.1 4.0 24 34-57 48-71 (608)
352 3bh0_A DNAB-like replicative h 96.5 0.0023 7.8E-08 55.7 4.7 40 28-69 65-104 (315)
353 1w5s_A Origin recognition comp 96.5 0.0011 3.6E-08 58.8 2.6 24 32-55 51-76 (412)
354 2wji_A Ferrous iron transport 96.5 0.0013 4.5E-08 50.9 2.9 22 33-54 5-26 (165)
355 1w1w_A Structural maintenance 96.5 0.0017 5.7E-08 58.9 3.7 27 32-58 27-53 (430)
356 2wjy_A Regulator of nonsense t 96.5 0.0023 8E-08 62.7 5.0 38 34-71 374-411 (800)
357 2qag_C Septin-7; cell cycle, c 96.4 0.00076 2.6E-08 61.4 1.2 23 34-56 34-56 (418)
358 1wb9_A DNA mismatch repair pro 96.4 0.00088 3E-08 65.7 1.7 33 22-55 597-631 (800)
359 2ged_A SR-beta, signal recogni 96.4 0.0041 1.4E-07 48.9 5.3 24 32-55 49-72 (193)
360 3foz_A TRNA delta(2)-isopenten 96.4 0.0021 7.1E-08 56.4 3.8 25 32-56 11-35 (316)
361 2zej_A Dardarin, leucine-rich 96.4 0.0014 4.7E-08 51.8 2.4 21 34-54 5-25 (184)
362 2fna_A Conserved hypothetical 96.4 0.0027 9.2E-08 54.7 4.4 26 32-57 31-56 (357)
363 2wjg_A FEOB, ferrous iron tran 96.4 0.0019 6.5E-08 50.6 3.0 22 33-54 9-30 (188)
364 1ewq_A DNA mismatch repair pro 96.3 0.0011 3.7E-08 64.8 1.9 32 23-55 569-600 (765)
365 4edh_A DTMP kinase, thymidylat 96.3 0.0026 9E-08 52.4 3.7 25 34-58 9-33 (213)
366 2axn_A 6-phosphofructo-2-kinas 96.3 0.0014 4.8E-08 61.2 2.2 25 34-58 38-62 (520)
367 2wsm_A Hydrogenase expression/ 96.3 0.0068 2.3E-07 48.9 6.1 25 33-57 32-56 (221)
368 2dyk_A GTP-binding protein; GT 96.3 0.0025 8.5E-08 48.3 3.3 23 33-55 3-25 (161)
369 1z2a_A RAS-related protein RAB 96.3 0.0024 8.3E-08 48.7 3.2 23 33-55 7-29 (168)
370 3thx_B DNA mismatch repair pro 96.3 0.00082 2.8E-08 66.8 0.6 34 21-54 661-696 (918)
371 3exa_A TRNA delta(2)-isopenten 96.3 0.0024 8.1E-08 56.1 3.4 25 33-57 5-29 (322)
372 1nij_A Hypothetical protein YJ 96.3 0.0027 9.2E-08 55.4 3.7 22 34-55 7-28 (318)
373 1t9h_A YLOQ, probable GTPase E 96.3 0.00047 1.6E-08 60.3 -1.1 25 34-58 176-200 (307)
374 1kao_A RAP2A; GTP-binding prot 96.2 0.0027 9.1E-08 48.2 3.3 23 33-55 5-27 (167)
375 1g8f_A Sulfate adenylyltransfe 96.2 0.0034 1.2E-07 58.5 4.5 25 33-57 397-421 (511)
376 2qen_A Walker-type ATPase; unk 96.2 0.0028 9.5E-08 54.5 3.6 24 32-55 32-55 (350)
377 2i1q_A DNA repair and recombin 96.2 0.0018 6.3E-08 56.2 2.3 22 34-55 101-122 (322)
378 2gj8_A MNME, tRNA modification 96.2 0.0023 8E-08 50.0 2.7 22 34-55 7-28 (172)
379 1nrj_B SR-beta, signal recogni 96.2 0.0029 9.8E-08 51.0 3.2 23 33-55 14-36 (218)
380 1a7j_A Phosphoribulokinase; tr 96.2 0.0011 3.7E-08 57.3 0.7 23 34-56 8-30 (290)
381 1ny5_A Transcriptional regulat 96.1 0.0063 2.1E-07 54.5 5.7 25 32-56 161-185 (387)
382 3thx_A DNA mismatch repair pro 96.1 0.0014 4.9E-08 65.2 1.6 30 23-52 652-683 (934)
383 1ek0_A Protein (GTP-binding pr 96.1 0.0031 1.1E-07 48.1 3.2 23 33-55 5-27 (170)
384 2r2a_A Uncharacterized protein 96.1 0.0032 1.1E-07 51.4 3.4 22 34-55 8-29 (199)
385 1u8z_A RAS-related protein RAL 96.1 0.0032 1.1E-07 47.8 3.2 23 33-55 6-28 (168)
386 2nzj_A GTP-binding protein REM 96.1 0.0028 9.7E-08 48.7 2.9 23 33-55 6-28 (175)
387 2ce2_X GTPase HRAS; signaling 96.1 0.0028 9.5E-08 47.9 2.8 23 33-55 5-27 (166)
388 1z0j_A RAB-22, RAS-related pro 96.1 0.0033 1.1E-07 48.0 3.3 22 34-55 9-30 (170)
389 1wms_A RAB-9, RAB9, RAS-relate 96.1 0.0033 1.1E-07 48.5 3.3 22 34-55 10-31 (177)
390 3clv_A RAB5 protein, putative; 96.1 0.0044 1.5E-07 48.6 4.0 22 33-54 9-30 (208)
391 2erx_A GTP-binding protein DI- 96.1 0.0032 1.1E-07 48.1 3.1 21 34-54 6-26 (172)
392 3hdt_A Putative kinase; struct 96.1 0.0029 9.9E-08 52.6 2.9 27 33-59 16-42 (223)
393 1z08_A RAS-related protein RAB 96.1 0.0035 1.2E-07 47.9 3.2 23 33-55 8-30 (170)
394 1ky3_A GTP-binding protein YPT 96.1 0.0036 1.2E-07 48.4 3.3 23 33-55 10-32 (182)
395 2ocp_A DGK, deoxyguanosine kin 96.1 0.0033 1.1E-07 52.1 3.1 23 34-56 5-27 (241)
396 1g16_A RAS-related protein SEC 96.0 0.0032 1.1E-07 48.1 2.8 23 33-55 5-27 (170)
397 3q85_A GTP-binding protein REM 96.0 0.0033 1.1E-07 48.2 2.9 21 34-54 5-25 (169)
398 3v9p_A DTMP kinase, thymidylat 96.0 0.0029 9.8E-08 52.8 2.6 23 34-56 28-50 (227)
399 1p5z_B DCK, deoxycytidine kina 96.0 0.0018 6.1E-08 54.5 1.4 23 34-56 27-49 (263)
400 1c1y_A RAS-related protein RAP 96.0 0.0039 1.3E-07 47.4 3.2 22 33-54 5-26 (167)
401 2lkc_A Translation initiation 96.0 0.005 1.7E-07 47.5 3.9 22 33-54 10-31 (178)
402 1r2q_A RAS-related protein RAB 96.0 0.0039 1.3E-07 47.5 3.2 21 34-54 9-29 (170)
403 1ega_A Protein (GTP-binding pr 96.0 0.0036 1.2E-07 54.1 3.3 21 34-54 11-31 (301)
404 2hxs_A RAB-26, RAS-related pro 96.0 0.0041 1.4E-07 48.0 3.2 22 34-55 9-30 (178)
405 2j37_W Signal recognition part 96.0 0.0065 2.2E-07 56.5 5.1 24 33-56 103-126 (504)
406 3aji_B S6C, proteasome (prosom 96.0 0.0045 1.5E-07 43.0 3.1 66 95-160 2-72 (83)
407 3bc1_A RAS-related protein RAB 96.0 0.004 1.4E-07 48.5 3.2 22 33-54 13-34 (195)
408 1x6v_B Bifunctional 3'-phospho 96.0 0.0037 1.3E-07 59.7 3.5 22 34-55 55-76 (630)
409 2r6a_A DNAB helicase, replicat 96.0 0.004 1.4E-07 56.9 3.6 46 23-69 193-240 (454)
410 3auy_A DNA double-strand break 96.0 0.0019 6.6E-08 57.4 1.4 30 24-53 17-47 (371)
411 2orw_A Thymidine kinase; TMTK, 96.0 0.0035 1.2E-07 50.3 2.8 21 34-54 6-26 (184)
412 3tmk_A Thymidylate kinase; pho 95.9 0.0041 1.4E-07 51.5 3.2 24 34-57 8-31 (216)
413 3eph_A TRNA isopentenyltransfe 95.9 0.0036 1.2E-07 56.7 3.0 25 33-57 4-28 (409)
414 4dsu_A GTPase KRAS, isoform 2B 95.9 0.0045 1.5E-07 48.2 3.3 22 34-55 7-28 (189)
415 1bif_A 6-phosphofructo-2-kinas 95.9 0.0038 1.3E-07 57.3 3.2 25 34-58 42-66 (469)
416 1svi_A GTP-binding protein YSX 95.9 0.003 1E-07 49.8 2.2 23 32-54 24-46 (195)
417 1upt_A ARL1, ADP-ribosylation 95.9 0.0055 1.9E-07 46.9 3.7 22 33-54 9-30 (171)
418 1r8s_A ADP-ribosylation factor 95.9 0.0046 1.6E-07 47.0 3.2 21 34-54 3-23 (164)
419 2v3c_C SRP54, signal recogniti 95.9 0.005 1.7E-07 56.2 3.9 24 33-56 101-124 (432)
420 3k53_A Ferrous iron transport 95.9 0.0036 1.2E-07 52.9 2.7 23 33-55 5-27 (271)
421 2y8e_A RAB-protein 6, GH09086P 95.9 0.0042 1.5E-07 47.8 2.8 21 34-54 17-37 (179)
422 3lxx_A GTPase IMAP family memb 95.9 0.0044 1.5E-07 51.1 3.1 24 33-56 31-54 (239)
423 2oil_A CATX-8, RAS-related pro 95.9 0.0049 1.7E-07 48.6 3.2 23 33-55 27-49 (193)
424 2efe_B Small GTP-binding prote 95.9 0.005 1.7E-07 47.6 3.2 21 34-54 15-35 (181)
425 1z0f_A RAB14, member RAS oncog 95.9 0.005 1.7E-07 47.4 3.2 23 33-55 17-39 (179)
426 3q72_A GTP-binding protein RAD 95.9 0.0039 1.3E-07 47.6 2.5 21 34-54 5-25 (166)
427 1udx_A The GTP-binding protein 95.8 0.0013 4.6E-08 59.7 -0.2 30 25-54 149-180 (416)
428 2fn4_A P23, RAS-related protei 95.8 0.0045 1.5E-07 47.7 2.9 21 34-54 12-32 (181)
429 2a9k_A RAS-related protein RAL 95.8 0.0051 1.7E-07 47.7 3.2 23 33-55 20-42 (187)
430 3con_A GTPase NRAS; structural 95.8 0.0051 1.7E-07 48.2 3.2 22 34-55 24-45 (190)
431 2xzl_A ATP-dependent helicase 95.8 0.0047 1.6E-07 60.6 3.5 38 34-71 378-415 (802)
432 2q6t_A DNAB replication FORK h 95.8 0.0044 1.5E-07 56.4 3.2 41 28-69 197-237 (444)
433 3t1o_A Gliding protein MGLA; G 95.8 0.0057 2E-07 47.8 3.4 23 34-56 17-39 (198)
434 3tw8_B RAS-related protein RAB 95.8 0.005 1.7E-07 47.5 2.9 22 33-54 11-32 (181)
435 2g6b_A RAS-related protein RAB 95.8 0.0056 1.9E-07 47.3 3.2 23 33-55 12-34 (180)
436 3p32_A Probable GTPase RV1496/ 95.8 0.0063 2.2E-07 53.7 3.9 22 34-55 82-103 (355)
437 2o8b_B DNA mismatch repair pro 95.8 0.0026 8.9E-08 64.0 1.5 34 21-55 770-812 (1022)
438 2bme_A RAB4A, RAS-related prot 95.8 0.0049 1.7E-07 48.0 2.8 23 33-55 12-34 (186)
439 3ld9_A DTMP kinase, thymidylat 95.8 0.0058 2E-07 50.8 3.4 24 34-57 24-47 (223)
440 4a1f_A DNAB helicase, replicat 95.8 0.006 2.1E-07 53.9 3.6 38 30-69 43-82 (338)
441 2atv_A RERG, RAS-like estrogen 95.7 0.0063 2.1E-07 48.2 3.4 22 33-54 30-51 (196)
442 4ag6_A VIRB4 ATPase, type IV s 95.7 0.0073 2.5E-07 53.8 4.2 27 31-57 35-61 (392)
443 1m7b_A RND3/RHOE small GTP-bin 95.7 0.0051 1.7E-07 48.2 2.8 21 34-54 10-30 (184)
444 2r8r_A Sensor protein; KDPD, P 95.7 0.007 2.4E-07 50.6 3.8 23 34-56 9-31 (228)
445 2cxx_A Probable GTP-binding pr 95.7 0.0042 1.4E-07 48.5 2.3 21 34-54 4-24 (190)
446 1fzq_A ADP-ribosylation factor 95.7 0.0071 2.4E-07 47.5 3.6 22 33-54 18-39 (181)
447 2p5s_A RAS and EF-hand domain 95.7 0.0061 2.1E-07 48.5 3.3 24 32-55 29-52 (199)
448 3lv8_A DTMP kinase, thymidylat 95.7 0.0049 1.7E-07 51.7 2.7 25 34-58 30-54 (236)
449 1mh1_A RAC1; GTP-binding, GTPa 95.7 0.0062 2.1E-07 47.2 3.2 21 34-54 8-28 (186)
450 3kkq_A RAS-related protein M-R 95.7 0.0063 2.1E-07 47.3 3.2 21 34-54 21-41 (183)
451 2gf9_A RAS-related protein RAB 95.7 0.0063 2.1E-07 47.8 3.2 23 33-55 24-46 (189)
452 3tkl_A RAS-related protein RAB 95.7 0.0063 2.1E-07 47.8 3.2 23 33-55 18-40 (196)
453 3pqc_A Probable GTP-binding pr 95.7 0.006 2E-07 47.7 3.0 23 33-55 25-47 (195)
454 2bov_A RAla, RAS-related prote 95.7 0.0065 2.2E-07 48.1 3.2 23 33-55 16-38 (206)
455 3ihw_A Centg3; RAS, centaurin, 95.6 0.0068 2.3E-07 47.8 3.2 22 34-55 23-44 (184)
456 1vg8_A RAS-related protein RAB 95.6 0.0068 2.3E-07 48.1 3.3 23 33-55 10-32 (207)
457 1x3s_A RAS-related protein RAB 95.6 0.0069 2.4E-07 47.4 3.2 23 33-55 17-39 (195)
458 2qtf_A Protein HFLX, GTP-bindi 95.6 0.011 3.9E-07 52.5 4.9 22 34-55 182-203 (364)
459 3bwd_D RAC-like GTP-binding pr 95.6 0.0071 2.4E-07 46.8 3.2 22 33-54 10-31 (182)
460 1ni3_A YCHF GTPase, YCHF GTP-b 95.6 0.0066 2.3E-07 54.7 3.4 21 34-54 23-43 (392)
461 2hf9_A Probable hydrogenase ni 95.6 0.012 4E-07 47.7 4.6 25 32-56 39-63 (226)
462 1zbd_A Rabphilin-3A; G protein 95.6 0.0066 2.3E-07 48.2 3.0 24 32-55 9-32 (203)
463 3vlf_B 26S protease regulatory 95.6 0.0022 7.4E-08 45.5 0.1 44 95-138 2-46 (88)
464 2vf7_A UVRA2, excinuclease ABC 95.6 0.0011 3.9E-08 65.2 -1.8 34 22-55 512-548 (842)
465 3oes_A GTPase rhebl1; small GT 95.6 0.0065 2.2E-07 48.4 2.9 23 33-55 26-48 (201)
466 1z06_A RAS-related protein RAB 95.6 0.0076 2.6E-07 47.3 3.3 22 33-54 22-43 (189)
467 1zd9_A ADP-ribosylation factor 95.6 0.0075 2.6E-07 47.5 3.2 22 34-55 25-46 (188)
468 1moz_A ARL1, ADP-ribosylation 95.5 0.0068 2.3E-07 47.0 2.9 22 32-53 19-40 (183)
469 2a5j_A RAS-related protein RAB 95.5 0.0077 2.6E-07 47.5 3.2 22 34-55 24-45 (191)
470 2fg5_A RAB-22B, RAS-related pr 95.5 0.0068 2.3E-07 47.9 2.9 23 33-55 25-47 (192)
471 3c5c_A RAS-like protein 12; GD 95.5 0.0081 2.8E-07 47.4 3.3 22 34-55 24-45 (187)
472 3dz8_A RAS-related protein RAB 95.5 0.0069 2.4E-07 47.7 2.8 22 34-55 26-47 (191)
473 1m8p_A Sulfate adenylyltransfe 95.5 0.0066 2.3E-07 57.3 3.1 24 34-57 399-422 (573)
474 1ksh_A ARF-like protein 2; sma 95.5 0.0062 2.1E-07 47.6 2.5 23 33-55 20-42 (186)
475 2xxa_A Signal recognition part 95.5 0.0099 3.4E-07 54.2 4.2 25 32-56 101-125 (433)
476 2iwr_A Centaurin gamma 1; ANK 95.5 0.0058 2E-07 47.3 2.3 21 34-54 10-30 (178)
477 3cph_A RAS-related protein SEC 95.5 0.008 2.7E-07 47.9 3.2 22 33-54 22-43 (213)
478 3t5g_A GTP-binding protein RHE 95.5 0.0071 2.4E-07 46.9 2.8 22 33-54 8-29 (181)
479 3iev_A GTP-binding protein ERA 95.5 0.007 2.4E-07 52.4 3.0 27 29-55 7-34 (308)
480 3reg_A RHO-like small GTPase; 95.5 0.0081 2.8E-07 47.4 3.2 22 34-55 26-47 (194)
481 1yrb_A ATP(GTP)binding protein 95.5 0.014 4.8E-07 48.4 4.8 23 34-56 17-39 (262)
482 2bcg_Y Protein YP2, GTP-bindin 95.5 0.007 2.4E-07 48.2 2.8 23 33-55 10-32 (206)
483 4tmk_A Protein (thymidylate ki 95.5 0.0068 2.3E-07 49.9 2.8 25 34-58 6-30 (213)
484 2gf0_A GTP-binding protein DI- 95.5 0.0074 2.5E-07 47.5 2.9 21 34-54 11-31 (199)
485 2b6h_A ADP-ribosylation factor 95.5 0.0096 3.3E-07 47.2 3.6 21 33-53 31-51 (192)
486 1w36_D RECD, exodeoxyribonucle 95.5 0.0075 2.6E-07 57.3 3.3 23 33-55 166-188 (608)
487 3bgw_A DNAB-like replicative h 95.4 0.0079 2.7E-07 55.0 3.4 41 27-69 193-233 (444)
488 4ad8_A DNA repair protein RECN 95.4 0.0014 4.9E-08 60.8 -1.6 38 19-56 47-85 (517)
489 2ygr_A Uvrabc system protein A 95.4 0.0024 8.3E-08 63.8 -0.2 30 22-51 657-688 (993)
490 3cmu_A Protein RECA, recombina 95.4 0.025 8.6E-07 60.4 7.3 41 28-70 380-420 (2050)
491 1q57_A DNA primase/helicase; d 95.4 0.01 3.5E-07 54.7 4.0 42 27-69 238-279 (503)
492 2b8t_A Thymidine kinase; deoxy 95.4 0.0087 3E-07 49.8 3.1 22 34-55 15-36 (223)
493 3t34_A Dynamin-related protein 95.4 0.008 2.7E-07 53.0 3.1 31 23-54 27-57 (360)
494 3l0o_A Transcription terminati 95.3 0.0099 3.4E-07 53.8 3.6 28 28-55 170-199 (427)
495 3b1v_A Ferrous iron uptake tra 95.3 0.0083 2.9E-07 51.2 2.9 22 33-54 5-26 (272)
496 2fh5_B SR-beta, signal recogni 95.3 0.0098 3.3E-07 47.7 3.2 23 33-55 9-31 (214)
497 1ko7_A HPR kinase/phosphatase; 95.3 0.013 4.6E-07 51.2 4.2 24 31-54 144-167 (314)
498 1gwn_A RHO-related GTP-binding 95.3 0.0086 2.9E-07 48.3 2.8 22 34-55 31-52 (205)
499 3cmw_A Protein RECA, recombina 95.3 0.022 7.6E-07 59.9 6.5 42 27-70 30-71 (1706)
500 1zj6_A ADP-ribosylation factor 95.3 0.0085 2.9E-07 47.0 2.7 21 33-53 18-38 (187)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.2e-29 Score=230.81 Aligned_cols=136 Identities=29% Similarity=0.385 Sum_probs=120.3
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
+++|++|.+.+..++.++++|..+|+.+++|+|||||||||||+++++||++++.+|
T Consensus 154 ~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~l 233 (405)
T 4b4t_J 154 TKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVREL 233 (405)
T ss_dssp HHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999998
Q ss_pred ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723 60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR 88 (236)
Q Consensus 60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~ 88 (236)
...++||+|||+++.||||++||||||+.
T Consensus 234 F~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~ 313 (405)
T 4b4t_J 234 FVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRK 313 (405)
T ss_dssp HHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCE
T ss_pred HHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceE
Confidence 23689999999999999999999999999
Q ss_pred EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723 89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMP 138 (236)
Q Consensus 89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~ 138 (236)
|++++|+.+.|..||+.|+.........++..++. +.|||++||..+|..
T Consensus 314 I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~e 364 (405)
T 4b4t_J 314 IEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTE 364 (405)
T ss_dssp EECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHH
T ss_pred EEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHH
Confidence 99999999999999999987544332223555555 779999999877764
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.7e-29 Score=230.84 Aligned_cols=136 Identities=25% Similarity=0.380 Sum_probs=119.9
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
+++|++|.+.+..++.++++|..+|+.+++|+|||||||||||+++++||++++.+|
T Consensus 188 d~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~l 267 (437)
T 4b4t_I 188 ESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQI 267 (437)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999988
Q ss_pred ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723 60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR 88 (236)
Q Consensus 60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~ 88 (236)
.++++||+|||+++.||||++|+||||+.
T Consensus 268 F~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~ 347 (437)
T 4b4t_I 268 FKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRK 347 (437)
T ss_dssp HHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEE
T ss_pred HHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEE
Confidence 23689999999999999999999999999
Q ss_pred EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723 89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMP 138 (236)
Q Consensus 89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~ 138 (236)
|+|++|+.++|..||+.|+.........++..++. +.|||++||..+|..
T Consensus 348 I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~e 398 (437)
T 4b4t_I 348 ILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTE 398 (437)
T ss_dssp ECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHH
T ss_pred EEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHH
Confidence 99999999999999999987543332223455555 779999999877663
No 3
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3e-29 Score=230.82 Aligned_cols=156 Identities=24% Similarity=0.389 Sum_probs=128.0
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
+++|++|.+.+..++.++++|..+|+.+++|+|||||||||||+++++||+.++.+|
T Consensus 187 ~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~ 266 (437)
T 4b4t_L 187 TEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREM 266 (437)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999998
Q ss_pred ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723 60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR 88 (236)
Q Consensus 60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~ 88 (236)
.+.++||+|||+++.||||++||||||+.
T Consensus 267 F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~ 346 (437)
T 4b4t_L 267 FAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRK 346 (437)
T ss_dssp HHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEE
T ss_pred HHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCcccee
Confidence 23689999999999999999999999999
Q ss_pred EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcccc----cccChHHHHHHHHHHHHH
Q 048723 89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPKS----DEEDADSCLKNLIEALKV 158 (236)
Q Consensus 89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~~----~~~~~~~~~~~~~~~L~~ 158 (236)
|+|++|+.+.|..||+.|+.........++..++. +.|||++||..+|..++ ......++.+++..++++
T Consensus 347 I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 347 VEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp ECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred eecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 99999999999999999986543322223555555 78999999988776411 111223455555555544
No 4
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.3e-29 Score=228.23 Aligned_cols=136 Identities=27% Similarity=0.339 Sum_probs=119.2
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
+++|++|.+.+..++.+++.|..+|+.+++|+|||||||||||+++++||++++.+|
T Consensus 215 ~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~l 294 (467)
T 4b4t_H 215 KDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVREL 294 (467)
T ss_dssp HHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999988
Q ss_pred ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723 60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR 88 (236)
Q Consensus 60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~ 88 (236)
.+.++||+|||+++.||||++|+||||+.
T Consensus 295 F~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~ 374 (467)
T 4b4t_H 295 FEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRK 374 (467)
T ss_dssp HHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEE
T ss_pred HHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEE
Confidence 23689999999999999999999999999
Q ss_pred EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723 89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMP 138 (236)
Q Consensus 89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~ 138 (236)
|+|++|+.++|..||+.|+.........++..++. +.|||++||..+|..
T Consensus 375 I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~e 425 (467)
T 4b4t_H 375 VEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTE 425 (467)
T ss_dssp ECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHH
T ss_pred EEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHH
Confidence 99999999999999999987543332223445555 679999999877653
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.6e-29 Score=229.42 Aligned_cols=135 Identities=25% Similarity=0.323 Sum_probs=118.3
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
+++|++|.+.+..++.+++.|..+|+++++|+|||||||||||+++++||++++.+|
T Consensus 187 ~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~l 266 (434)
T 4b4t_M 187 DKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDA 266 (434)
T ss_dssp HHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999988
Q ss_pred ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723 60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR 88 (236)
Q Consensus 60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~ 88 (236)
.++++||+|||+++.||||++|+||||+.
T Consensus 267 F~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~ 346 (434)
T 4b4t_M 267 FALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRK 346 (434)
T ss_dssp HHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEE
T ss_pred HHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEE
Confidence 23679999999999999999999999999
Q ss_pred EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHc
Q 048723 89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLM 137 (236)
Q Consensus 89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~ 137 (236)
|+|++|+.++|..||+.|+.........++..++. +.|||++||..+|.
T Consensus 347 I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~ 396 (434)
T 4b4t_M 347 IEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTV 396 (434)
T ss_dssp EECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHH
T ss_pred EEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHH
Confidence 99999999999999999986443322223455555 67999999987665
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.4e-28 Score=225.98 Aligned_cols=135 Identities=30% Similarity=0.441 Sum_probs=118.0
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
+++|++|.+.+..++.++++|..+|+.+++|+|||||||||||+++++||+.++.+|
T Consensus 178 ~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~l 257 (428)
T 4b4t_K 178 DMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDV 257 (428)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999988
Q ss_pred ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723 60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR 88 (236)
Q Consensus 60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~ 88 (236)
..+++||+|||+++.||||++||||||+.
T Consensus 258 F~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~ 337 (428)
T 4b4t_K 258 FRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRK 337 (428)
T ss_dssp HHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEE
T ss_pred HHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEE
Confidence 23689999999999999999999999999
Q ss_pred Eecc-cCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHc
Q 048723 89 IEMS-YCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLM 137 (236)
Q Consensus 89 i~~~-~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~ 137 (236)
|+|+ +|+...|..|++.|+.........++..++. +.|||++||..+|.
T Consensus 338 I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~ 388 (428)
T 4b4t_K 338 IEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQ 388 (428)
T ss_dssp EECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHH
Confidence 9996 8999999999999986543322223455555 77999999986665
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.89 E-value=2.6e-24 Score=210.42 Aligned_cols=146 Identities=25% Similarity=0.312 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
++.|+++.+.+..++..++.|.++++.+++|+|||||||||||+++++||++++.+|
T Consensus 483 ~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~l 562 (806)
T 3cf2_A 483 EDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREI 562 (806)
T ss_dssp HHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHH
Confidence 467888988888888999999999999999999999999999999999999999988
Q ss_pred ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723 60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR 88 (236)
Q Consensus 60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~ 88 (236)
..+++||++||+++.||+|++|+||||++
T Consensus 563 F~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~ 642 (806)
T 3cf2_A 563 FDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQL 642 (806)
T ss_dssp HHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCE
T ss_pred HHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEE
Confidence 22679999999999999999999999999
Q ss_pred EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcccccccChHHHHHHHHHHHHHHH
Q 048723 89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPKSDEEDADSCLKNLIEALKVAK 160 (236)
Q Consensus 89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~~~~~~~~~~~~~~~~~L~~~~ 160 (236)
|++++|+.+.|..||+.|+.........++..++. +.|||++||..+|. ++.+.++++..
T Consensus 643 i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~------------~A~~~a~r~~~ 703 (806)
T 3cf2_A 643 IYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ------------RACKLAIRESI 703 (806)
T ss_dssp EEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHH------------HHHHHHHHHHH
T ss_pred EEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHH------------HHHHHHHHHHH
Confidence 99999999999999999987654433334555555 56888888876555 55566666544
No 8
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.89 E-value=5.5e-23 Score=178.57 Aligned_cols=136 Identities=22% Similarity=0.271 Sum_probs=113.5
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
++.|++|.+.+..++..+..|.++++.+++|++|+||||||||||+++||+.++..+
T Consensus 16 ~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~v 95 (274)
T 2x8a_A 16 EDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQV 95 (274)
T ss_dssp HHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHH
Confidence 467888888888999999999999999999999999999999999999999987654
Q ss_pred ------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEec
Q 048723 60 ------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEM 91 (236)
Q Consensus 60 ------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~ 91 (236)
...++++++||+++.||++++|+||||+.|++
T Consensus 96 f~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~ 175 (274)
T 2x8a_A 96 FQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFV 175 (274)
T ss_dssp HHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEEC
T ss_pred HHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEe
Confidence 11468899999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHhhccc---chhhHHHHHHHHH---cCCCCHHHHHHHHcc
Q 048723 92 SYCCFEAFMVLAKSYLDIE---SHAFFAEINSLLA---ETNMASADVAENLMP 138 (236)
Q Consensus 92 ~~p~~~~~~~i~~~~l~~~---~~~~~~~i~~ll~---~~gls~a~i~~~l~~ 138 (236)
++|+.+.|..|++.++... ......++..++. +.|||++||...|..
T Consensus 176 ~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~ 228 (274)
T 2x8a_A 176 GLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVRE 228 (274)
T ss_dssp CSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHH
Confidence 9999999999999987431 1111223444554 349999999877663
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.89 E-value=5.1e-23 Score=201.26 Aligned_cols=146 Identities=24% Similarity=0.278 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------
Q 048723 4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------ 59 (236)
Q Consensus 4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------ 59 (236)
+.+++|.+.+..++.++++|..+++.+++|+|||||||||||+|+++||++++.++
T Consensus 211 ~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF 290 (806)
T 3cf2_A 211 KQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAF 290 (806)
T ss_dssp TTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHH
Confidence 56888999888889999999999999999999999999999999999999999888
Q ss_pred -----------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecc
Q 048723 60 -----------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMS 92 (236)
Q Consensus 60 -----------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~ 92 (236)
.+.++||++||+++.||++++|+||||+.|+++
T Consensus 291 ~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~ 370 (806)
T 3cf2_A 291 EEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIG 370 (806)
T ss_dssp HHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECC
T ss_pred HHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecC
Confidence 236899999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcccccccChHHHHHHHHHHHHHHHH
Q 048723 93 YCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPKSDEEDADSCLKNLIEALKVAKE 161 (236)
Q Consensus 93 ~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~~~~~~~~~~~~~~~~~L~~~~~ 161 (236)
.|+...|..|++.|+.........++..++. +.||+++||..+|. ++.+.++++...
T Consensus 371 ~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~------------eA~~~A~~r~~~ 428 (806)
T 3cf2_A 371 IPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS------------EAALQAIRKKMD 428 (806)
T ss_dssp CCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHH------------HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHH------------HHHHHHHHhccc
Confidence 9999999999999987544333334555555 78999999876655 445556665543
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.82 E-value=7.4e-20 Score=160.33 Aligned_cols=135 Identities=27% Similarity=0.334 Sum_probs=112.8
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
++.++.+.+.+...+..++.|..+++.++++++|+||||||||+++++|++.++.++
T Consensus 21 ~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~ 100 (301)
T 3cf0_A 21 EDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREI 100 (301)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHH
Confidence 467888999888888999999999999999999999999999999999999988766
Q ss_pred ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723 60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR 88 (236)
Q Consensus 60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~ 88 (236)
..+++||++||+++.+|++++|+|||+..
T Consensus 101 f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~ 180 (301)
T 3cf0_A 101 FDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQL 180 (301)
T ss_dssp HHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEE
T ss_pred HHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceE
Confidence 11578999999999999999999999999
Q ss_pred EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHc
Q 048723 89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLM 137 (236)
Q Consensus 89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~ 137 (236)
|+++.|+.+.|..|++.++..........+..++. +.|++++||.+.|.
T Consensus 181 i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~ 230 (301)
T 3cf0_A 181 IYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ 230 (301)
T ss_dssp EECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHH
T ss_pred EecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999999886433221112233333 67899998877665
No 11
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.81 E-value=1.7e-19 Score=155.59 Aligned_cols=158 Identities=25% Similarity=0.301 Sum_probs=123.3
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
++.+++|.+.+..++..+..+..+++..+++++|+||||||||+++++|++.++.++
T Consensus 23 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 102 (285)
T 3h4m_A 23 EKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDI 102 (285)
T ss_dssp HHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHH
Confidence 467888888888888899999999999999999999999999999999999998776
Q ss_pred ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723 60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR 88 (236)
Q Consensus 60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~ 88 (236)
.+.++||+|||.++.+|++++|++||+..
T Consensus 103 ~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~ 182 (285)
T 3h4m_A 103 FKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRI 182 (285)
T ss_dssp HHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEE
T ss_pred HHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeE
Confidence 12578999999999999999999999999
Q ss_pred EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHccc---c-cccChHHHHHHHHHHHHHHH
Q 048723 89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPK---S-DEEDADSCLKNLIEALKVAK 160 (236)
Q Consensus 89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~---~-~~~~~~~~~~~~~~~L~~~~ 160 (236)
+.++.|+.+++..|++.++..........+..++. ..|++++++..++..+ + ......++.+++..++.+..
T Consensus 183 i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~ 259 (285)
T 3h4m_A 183 IEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIM 259 (285)
T ss_dssp EECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHH
Confidence 99999999999999999876433322222344444 6799999988766541 1 11222355555555555543
No 12
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.80 E-value=2.4e-19 Score=166.76 Aligned_cols=156 Identities=26% Similarity=0.312 Sum_probs=120.7
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
++.++++.+.+ .++..+..|.++++.+++|++|+||||||||+++++|++.++.+|
T Consensus 22 ~~~~~~l~e~v-~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~l 100 (476)
T 2ce7_A 22 EEAIEELKEVV-EFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDL 100 (476)
T ss_dssp HHHHHHHHHHH-HHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHH
Confidence 45677777654 567788899999999999999999999999999999999998776
Q ss_pred ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723 60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR 88 (236)
Q Consensus 60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~ 88 (236)
...++||++||+++.+|++++|+||||+.
T Consensus 101 f~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~ 180 (476)
T 2ce7_A 101 FAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKK 180 (476)
T ss_dssp HHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEE
T ss_pred HHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeE
Confidence 02478999999999999999999999999
Q ss_pred EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcccc---c-ccChHHHHHHHHHHHHHH
Q 048723 89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPKS---D-EEDADSCLKNLIEALKVA 159 (236)
Q Consensus 89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~~---~-~~~~~~~~~~~~~~L~~~ 159 (236)
|.++.|+.+.|..|++.|+..........+..++. +.|++++||.+.|.... . .....++.+++..++.+.
T Consensus 181 i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v 256 (476)
T 2ce7_A 181 IVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDRV 256 (476)
T ss_dssp EECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred eecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHH
Confidence 99999999999999999876433221112333444 77999999988776521 1 112345556666666554
No 13
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.79 E-value=6e-19 Score=150.37 Aligned_cols=135 Identities=24% Similarity=0.319 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
++.++++.+.+ .++..+..+..++..++++++|+|||||||||++++|++.++.++
T Consensus 18 ~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 96 (257)
T 1lv7_A 18 DEAKEEVAELV-EYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDM 96 (257)
T ss_dssp HHHHHHTHHHH-HHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHH
T ss_pred HHHHHHHHHHH-HHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHH
Confidence 45677776644 456778888999999999999999999999999999999987655
Q ss_pred ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723 60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR 88 (236)
Q Consensus 60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~ 88 (236)
...+++|++||+++.+|++++|++||++.
T Consensus 97 ~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~ 176 (257)
T 1lv7_A 97 FEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQ 176 (257)
T ss_dssp HHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEE
T ss_pred HHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeE
Confidence 01368999999999999999999999999
Q ss_pred EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723 89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMP 138 (236)
Q Consensus 89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~ 138 (236)
++++.|+.++|..|++.++..........+..++. ..|++++|+.+.+..
T Consensus 177 i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~ 227 (257)
T 1lv7_A 177 VVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNE 227 (257)
T ss_dssp EECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHH
Confidence 99999999999999998875432211111223333 678999999877664
No 14
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.79 E-value=2.8e-18 Score=151.89 Aligned_cols=132 Identities=27% Similarity=0.232 Sum_probs=108.6
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhc-CCcc----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFL-NYDL---------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l-~~~~---------------------- 59 (236)
++.|+.|.+.+..++..+.+|.. +..+++++||+||||||||+++++||+.+ +.++
T Consensus 18 ~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~ 96 (322)
T 1xwi_A 18 EGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKN 96 (322)
T ss_dssp HHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHH
Confidence 46788899988888888888874 35667899999999999999999999998 5554
Q ss_pred --------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEE
Q 048723 60 --------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRI 89 (236)
Q Consensus 60 --------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i 89 (236)
...++||++||+++.+|++++| ||+..+
T Consensus 97 lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i 174 (322)
T 1xwi_A 97 LFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRI 174 (322)
T ss_dssp HHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHH--TCCEEE
T ss_pred HHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHh--hcCeEE
Confidence 1247899999999999999999 999999
Q ss_pred ecccCCHHHHHHHHHHhhcccchh-hHHHHHHHHH-cCCCCHHHHHHHHc
Q 048723 90 EMSYCCFEAFMVLAKSYLDIESHA-FFAEINSLLA-ETNMASADVAENLM 137 (236)
Q Consensus 90 ~~~~p~~~~~~~i~~~~l~~~~~~-~~~~i~~ll~-~~gls~a~i~~~l~ 137 (236)
+++.|+.+.+..|++.++...... ....+..++. +.|+|++||..+|.
T Consensus 175 ~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 175 YIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp ECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999988654332 2344556665 67999999876555
No 15
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.78 E-value=3.5e-18 Score=150.86 Aligned_cols=132 Identities=24% Similarity=0.239 Sum_probs=108.8
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
++.++.|.+.+..++..+..+.. +..+++++||+||||||||+++++||+.++.++
T Consensus 24 ~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~ 102 (322)
T 3eie_A 24 EGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQL 102 (322)
T ss_dssp HHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHH
Confidence 46788888888888888877776 456678899999999999999999999998876
Q ss_pred -------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEe
Q 048723 60 -------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIE 90 (236)
Q Consensus 60 -------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~ 90 (236)
...++||++||+++.||++++| ||+..++
T Consensus 103 f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~--Rf~~~i~ 180 (322)
T 3eie_A 103 FAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIY 180 (322)
T ss_dssp HHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHH--HCCEEEE
T ss_pred HHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHc--ccCeEEE
Confidence 1257899999999999999999 9999999
Q ss_pred cccCCHHHHHHHHHHhhcccchh-hHHHHHHHHH-cCCCCHHHHHHHHc
Q 048723 91 MSYCCFEAFMVLAKSYLDIESHA-FFAEINSLLA-ETNMASADVAENLM 137 (236)
Q Consensus 91 ~~~p~~~~~~~i~~~~l~~~~~~-~~~~i~~ll~-~~gls~a~i~~~l~ 137 (236)
++.|+.+.|..|++.++...... ....+..++. +.|+++++|..+|.
T Consensus 181 ~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 181 IPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp CCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999998754432 2334555655 67899999875554
No 16
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=147.57 Aligned_cols=135 Identities=23% Similarity=0.306 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
++.++.+.+.+ .++..+..|..++...+++++|+||||||||+++++|++.++.++
T Consensus 12 ~~~~~~l~~~~-~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (262)
T 2qz4_A 12 HEAKLEVREFV-DYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSL 90 (262)
T ss_dssp HHHHHHHHHHH-HHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHH
Confidence 45677776654 456777888889999999999999999999999999999987665
Q ss_pred ----------------------------------------------------cCceEEEEeecCccccchHHHhcCCccc
Q 048723 60 ----------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDK 87 (236)
Q Consensus 60 ----------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~ 87 (236)
...+++|++||.++.+|++++|+|||+.
T Consensus 91 ~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~ 170 (262)
T 2qz4_A 91 FKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDR 170 (262)
T ss_dssp HHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCE
T ss_pred HHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCe
Confidence 0146899999999999999999999999
Q ss_pred EEecccCCHHHHHHHHHHhhcccchhhHH--HHHHHHH-cCCCCHHHHHHHHcc
Q 048723 88 RIEMSYCCFEAFMVLAKSYLDIESHAFFA--EINSLLA-ETNMASADVAENLMP 138 (236)
Q Consensus 88 ~i~~~~p~~~~~~~i~~~~l~~~~~~~~~--~i~~ll~-~~gls~a~i~~~l~~ 138 (236)
.++++.|+.+++..|++.++......... .+..++. ..|+++++|...+..
T Consensus 171 ~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~ 224 (262)
T 2qz4_A 171 HVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNE 224 (262)
T ss_dssp EEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHH
T ss_pred EEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHH
Confidence 99999999999999999887643222211 1234444 578999988877664
No 17
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.77 E-value=2.6e-18 Score=146.13 Aligned_cols=135 Identities=26% Similarity=0.337 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
++.+.++.+ +..++..+..+.++++.+++|++|+|||||||||++++|++.++..+
T Consensus 22 ~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~ 100 (254)
T 1ixz_A 22 EEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDL 100 (254)
T ss_dssp HHHHHHHHH-HHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHH
Confidence 356666665 44556778899999999999999999999999999999999876554
Q ss_pred ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723 60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR 88 (236)
Q Consensus 60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~ 88 (236)
...+++++++|+++.+|++++|++||++.
T Consensus 101 ~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~ 180 (254)
T 1ixz_A 101 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQ 180 (254)
T ss_dssp HHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEE
T ss_pred HHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeE
Confidence 01257889999999999999999999999
Q ss_pred EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723 89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMP 138 (236)
Q Consensus 89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~ 138 (236)
++++.|+.++|..|++.+...........+..++. ..|++++|+.+.+..
T Consensus 181 i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~ 231 (254)
T 1ixz_A 181 IAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNE 231 (254)
T ss_dssp EECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred EeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHH
Confidence 99999999999999998865332221122334444 679999998877764
No 18
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.76 E-value=1.5e-18 Score=162.28 Aligned_cols=156 Identities=25% Similarity=0.300 Sum_probs=118.7
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
++.+.++.+. ..++..+..|.++++.+++|++|+||||||||||+++|++.++.++
T Consensus 37 ~~~k~~l~~l-v~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~l 115 (499)
T 2dhr_A 37 EEAKEELKEI-VEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDL 115 (499)
T ss_dssp HHHHHHHHHH-HHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHH
Confidence 4567777664 4567788899999999999999999999999999999999987665
Q ss_pred ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723 60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR 88 (236)
Q Consensus 60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~ 88 (236)
...++++++||+++.||++++|+||||+.
T Consensus 116 fq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~ 195 (499)
T 2dhr_A 116 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQ 195 (499)
T ss_dssp TTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCE
T ss_pred HHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceE
Confidence 01358899999999999999999999999
Q ss_pred EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcccc---cc-cChHHHHHHHHHHHHHH
Q 048723 89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPKS---DE-EDADSCLKNLIEALKVA 159 (236)
Q Consensus 89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~~---~~-~~~~~~~~~~~~~L~~~ 159 (236)
|.++.|+...|..|++.|+..........+..++. +.|++++||.+.+...+ .. ....++.+++..++.+.
T Consensus 196 i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v 271 (499)
T 2dhr_A 196 IAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRV 271 (499)
T ss_dssp EECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHH
T ss_pred EecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Confidence 99999999999999998875432221122333444 67999999988877521 11 12345556666666543
No 19
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.76 E-value=1.5e-17 Score=149.18 Aligned_cols=132 Identities=24% Similarity=0.242 Sum_probs=107.5
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
++.++.|.+.+..++..+..|.. +..+++++||+||||||||+++++||+.++.++
T Consensus 57 ~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~ 135 (355)
T 2qp9_X 57 EGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQL 135 (355)
T ss_dssp GGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHH
Confidence 35677888887777777877776 566778899999999999999999999998776
Q ss_pred -------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEe
Q 048723 60 -------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIE 90 (236)
Q Consensus 60 -------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~ 90 (236)
...++||++||+++.||++++| ||+..++
T Consensus 136 f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~ 213 (355)
T 2qp9_X 136 FAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIY 213 (355)
T ss_dssp HHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--TCCEEEE
T ss_pred HHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--ccCEEEE
Confidence 1257899999999999999999 9999999
Q ss_pred cccCCHHHHHHHHHHhhcccchh-hHHHHHHHHH-cCCCCHHHHHHHHc
Q 048723 91 MSYCCFEAFMVLAKSYLDIESHA-FFAEINSLLA-ETNMASADVAENLM 137 (236)
Q Consensus 91 ~~~p~~~~~~~i~~~~l~~~~~~-~~~~i~~ll~-~~gls~a~i~~~l~ 137 (236)
++.|+.+.|..|++.++...... ....+..++. +.|+++++|..+|.
T Consensus 214 i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 214 IPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp CCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred eCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999998754332 2234555555 67899999876555
No 20
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.75 E-value=1.3e-17 Score=143.91 Aligned_cols=135 Identities=26% Similarity=0.337 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
++.+.++.+ +..++..+..+.++++.+++|++|+||||||||||+++|++.+...+
T Consensus 46 ~~~~~~l~~-l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~ 124 (278)
T 1iy2_A 46 EEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDL 124 (278)
T ss_dssp HHHHHHHHH-HHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHH
Confidence 456666655 44556778899999999999999999999999999999999876544
Q ss_pred ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723 60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR 88 (236)
Q Consensus 60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~ 88 (236)
....++++++|+++.+|++++|++||++.
T Consensus 125 ~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~ 204 (278)
T 1iy2_A 125 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQ 204 (278)
T ss_dssp HHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCE
T ss_pred HHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeE
Confidence 00258889999999999999999999999
Q ss_pred EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723 89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMP 138 (236)
Q Consensus 89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~ 138 (236)
++++.|+.++|..|++.++..........+..++. ..|++++||.+.+..
T Consensus 205 i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~ 255 (278)
T 1iy2_A 205 IAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNE 255 (278)
T ss_dssp EECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred EEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHH
Confidence 99999999999999998865332221112333444 679999988876664
No 21
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.74 E-value=1.2e-17 Score=155.82 Aligned_cols=135 Identities=25% Similarity=0.272 Sum_probs=113.8
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
+..+++|.+.+...+..+.+|..++...++++||+||||||||+++++|++.++.+|
T Consensus 210 ~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~ 289 (489)
T 3hu3_A 210 RKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKA 289 (489)
T ss_dssp HHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHH
Confidence 456788888888888899999999999999999999999999999999999998776
Q ss_pred ------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEec
Q 048723 60 ------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEM 91 (236)
Q Consensus 60 ------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~ 91 (236)
...++||++||+++.||++++|+|||+..|++
T Consensus 290 f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i 369 (489)
T 3hu3_A 290 FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 369 (489)
T ss_dssp HHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEEC
T ss_pred HHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEe
Confidence 22679999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHc
Q 048723 92 SYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLM 137 (236)
Q Consensus 92 ~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~ 137 (236)
+.|+.++|..|++.++..........+..++. ..|++++++..++.
T Consensus 370 ~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~ 416 (489)
T 3hu3_A 370 GIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS 416 (489)
T ss_dssp CCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHH
Confidence 99999999999999876443332223444444 67999998876655
No 22
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.74 E-value=3.4e-17 Score=150.95 Aligned_cols=132 Identities=26% Similarity=0.233 Sum_probs=105.3
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhc-CCcc----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFL-NYDL---------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l-~~~~---------------------- 59 (236)
++.++.+.+.+..++..+.+|.. +..+++++||+||||||||+++++||+.+ +.+|
T Consensus 140 ~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~ 218 (444)
T 2zan_A 140 EGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKN 218 (444)
T ss_dssp HHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHH
Confidence 45677888877777777777664 24566889999999999999999999998 5554
Q ss_pred --------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEE
Q 048723 60 --------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRI 89 (236)
Q Consensus 60 --------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i 89 (236)
...++||++||+++.+|++++| ||+..+
T Consensus 219 ~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i 296 (444)
T 2zan_A 219 LFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRI 296 (444)
T ss_dssp HHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHT--TCCEEE
T ss_pred HHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHh--hcceEE
Confidence 1257899999999999999999 999999
Q ss_pred ecccCCHHHHHHHHHHhhcccchh-hHHHHHHHHH-cCCCCHHHHHHHHc
Q 048723 90 EMSYCCFEAFMVLAKSYLDIESHA-FFAEINSLLA-ETNMASADVAENLM 137 (236)
Q Consensus 90 ~~~~p~~~~~~~i~~~~l~~~~~~-~~~~i~~ll~-~~gls~a~i~~~l~ 137 (236)
+++.|+.+.+..|++.++...... ....+..++. +.|+|+++|..+|.
T Consensus 297 ~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 297 YIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp ECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999998654332 2234555555 67999999876655
No 23
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.73 E-value=2.3e-18 Score=162.61 Aligned_cols=187 Identities=17% Similarity=0.175 Sum_probs=121.7
Q ss_pred HHhhhCCCCC-cceEEECCCCCChHHHHHHHHhhcCCcc-----------------------------------------
Q 048723 22 YCAKIGKAWK-RGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------------------------- 59 (236)
Q Consensus 22 ~~~~~~~~~~-rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------------------------- 59 (236)
.+..+++..+ ..++|+|||||||||++++|++.++.++
T Consensus 98 ~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~ 177 (543)
T 3m6a_A 98 AVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP 177 (543)
T ss_dssp HHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSSE
T ss_pred HHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCC
Confidence 4455555553 2389999999999999999999987665
Q ss_pred --------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCC
Q 048723 60 --------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCC 95 (236)
Q Consensus 60 --------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~ 95 (236)
.+.++||+|||+++.+|+++++ ||+ +|.|+.|+
T Consensus 178 vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~ 254 (543)
T 3m6a_A 178 VFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYT 254 (543)
T ss_dssp EEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCC
T ss_pred EEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCC
Confidence 0346899999999999999999 884 78999999
Q ss_pred HHHHHHHHHHhhcccchhhHHHHHHHHHcC-------CCCHHHHHHHHcccccccChHHHHHHHHHHHHHHHHHHhhhHH
Q 048723 96 FEAFMVLAKSYLDIESHAFFAEINSLLAET-------NMASADVAENLMPKSDEEDADSCLKNLIEALKVAKEEARKNAE 168 (236)
Q Consensus 96 ~~~~~~i~~~~l~~~~~~~~~~i~~ll~~~-------gls~a~i~~~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~ 168 (236)
.+.+..|++.|+ +.+.+... .++...+...+..+... ..++.|++..+...+++.
T Consensus 255 ~~e~~~Il~~~l----------~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~--------~~vR~L~~~i~~~~~~aa 316 (543)
T 3m6a_A 255 EIEKLEIVKDHL----------LPKQIKEHGLKKSNLQLRDQAILDIIRYYTRE--------AGVRSLERQLAAICRKAA 316 (543)
T ss_dssp HHHHHHHHHHTH----------HHHHHHHTTCCGGGCEECHHHHHHHHHHHCCC--------SSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----------HHHHHHHcCCCcccccCCHHHHHHHHHhCChh--------hchhHHHHHHHHHHHHHH
Confidence 999999999887 22222322 33455443333322211 123334444444444443
Q ss_pred HHHhHHHHHHhHHhHHHHhhhhhHhHhhhhccCCCCCCCcccccCccc---cccCCCceEEEEecCCCCCC
Q 048723 169 EEALLKAEEAKKKAREEAKAEKEEDKHAKQNVKDDGTSDIGVKQNGFV---NKAGGGGEYLILNANGEMGN 236 (236)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 236 (236)
......+........+..+ ...+......+........|+| ||+|+||.++.||+..+||+
T Consensus 317 ~~~~~~~~~~~~It~~~l~-------~~Lg~~~~~~e~~~~~~~~g~v~g~a~~~~~g~~~~ve~~~~~g~ 380 (543)
T 3m6a_A 317 KAIVAEERKRITVTEKNLQ-------DFIGKRIFRYGQAETEDQVGVVTGLAYTTVGGDTLSIEVSLSPGK 380 (543)
T ss_dssp HHHHTTCCSCCEECTTTTH-------HHHCSCCSCCSTTTCCCBSSEEEEEEEETTEEEEEEEEEEEESSC
T ss_pred HHHHhcCCcceecCHHHHH-------HHhCCcccCchhhhccccccccccccccCCCccceeeEEEeeCCC
Confidence 3321111111112222223 5666666666665666777865 99999999999999999985
No 24
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.71 E-value=6.8e-18 Score=144.38 Aligned_cols=135 Identities=27% Similarity=0.360 Sum_probs=105.9
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
++.++.+.+.+ .++..+..|.+++..++++++|+||||||||+++++|++.++.++
T Consensus 17 ~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 95 (268)
T 2r62_A 17 EEAKEEVVEIV-DFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDL 95 (268)
T ss_dssp TTTHHHHHHHH-HHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTT
T ss_pred HHHHHHHHHHH-HHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHH
Confidence 34566676644 456788899999999999999999999999999999999887655
Q ss_pred -----------------------------------------------------cCceEEEEeecCccccchHHHhcCCcc
Q 048723 60 -----------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMD 86 (236)
Q Consensus 60 -----------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d 86 (236)
...+++|++||.++.+|++++|+|||+
T Consensus 96 ~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~ 175 (268)
T 2r62_A 96 FETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFD 175 (268)
T ss_dssp HHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSC
T ss_pred HHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCC
Confidence 012689999999999999999999999
Q ss_pred cEEecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723 87 KRIEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMP 138 (236)
Q Consensus 87 ~~i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~ 138 (236)
..++++.|+.+++..+++.++..........+..++. ..|++++++.+.+..
T Consensus 176 ~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~ 228 (268)
T 2r62_A 176 RQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINE 228 (268)
T ss_dssp CCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHH
T ss_pred eEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHH
Confidence 9999999999999999998875432211111222333 568999888877664
No 25
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.67 E-value=1.2e-18 Score=171.40 Aligned_cols=134 Identities=27% Similarity=0.337 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------
Q 048723 4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------ 59 (236)
Q Consensus 4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------ 59 (236)
+.++.+.+.+..+...+..+.++++.+++++||+||||||||+++++||+.++.++
T Consensus 484 ~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f 563 (806)
T 1ypw_A 484 DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIF 563 (806)
T ss_dssp CHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHH
T ss_pred hhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHH
Confidence 45666666665555667777788888889999999999999999999999998776
Q ss_pred --------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEE
Q 048723 60 --------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRI 89 (236)
Q Consensus 60 --------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i 89 (236)
...++||+|||+++.||++++|+|||+..|
T Consensus 564 ~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i 643 (806)
T 1ypw_A 564 DKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLI 643 (806)
T ss_dssp HHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCC
T ss_pred HHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCcee
Confidence 125789999999999999999999999999
Q ss_pred ecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHc
Q 048723 90 EMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLM 137 (236)
Q Consensus 90 ~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~ 137 (236)
++++|+.+.+..|++.++..........+..++. +.|||+++|..+|.
T Consensus 644 ~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~ 692 (806)
T 1ypw_A 644 YIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ 692 (806)
T ss_dssp CCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHH
Confidence 9999999999999999886433221112233333 56888888876655
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.67 E-value=7.9e-16 Score=133.34 Aligned_cols=132 Identities=22% Similarity=0.267 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
++.++.+.+.+......+.++..++ .++++++|+||||||||+++++|++.++.++
T Consensus 27 ~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 105 (297)
T 3b9p_A 27 DVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRAL 105 (297)
T ss_dssp HHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHH
Confidence 4567777777777666777776654 3467899999999999999999999988665
Q ss_pred ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723 60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR 88 (236)
Q Consensus 60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~ 88 (236)
...++||++||+++.+|++++| ||+..
T Consensus 106 ~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--R~~~~ 183 (297)
T 3b9p_A 106 FAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKR 183 (297)
T ss_dssp HHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHH--HCCEE
T ss_pred HHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHh--hCCeE
Confidence 0247899999999999999999 99999
Q ss_pred EecccCCHHHHHHHHHHhhcccchhh-HHHHHHHHH-cCCCCHHHHHHHHc
Q 048723 89 IEMSYCCFEAFMVLAKSYLDIESHAF-FAEINSLLA-ETNMASADVAENLM 137 (236)
Q Consensus 89 i~~~~p~~~~~~~i~~~~l~~~~~~~-~~~i~~ll~-~~gls~a~i~~~l~ 137 (236)
++++.|+.+.+..+++.++......+ ...+..++. +.|++++++...+.
T Consensus 184 i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 184 VYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp EECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999998876433221 223444444 67999998876655
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.65 E-value=1e-15 Score=138.41 Aligned_cols=132 Identities=26% Similarity=0.288 Sum_probs=104.1
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
+..++.|.+.+......+.++..++ .+.+++||+||||||||+++++||..++.+|
T Consensus 121 ~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~ 199 (389)
T 3vfd_A 121 DLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRAL 199 (389)
T ss_dssp HHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHH
Confidence 4567777777777777777777665 3467899999999999999999999998776
Q ss_pred --------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEE
Q 048723 60 --------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRI 89 (236)
Q Consensus 60 --------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i 89 (236)
...++||++||+++.+|++++| ||+..+
T Consensus 200 ~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--R~~~~i 277 (389)
T 3vfd_A 200 FAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRV 277 (389)
T ss_dssp HHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHT--TCCEEE
T ss_pred HHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHc--CcceEE
Confidence 1247899999999999999999 999999
Q ss_pred ecccCCHHHHHHHHHHhhcccchhh-HHHHHHHHH-cCCCCHHHHHHHHc
Q 048723 90 EMSYCCFEAFMVLAKSYLDIESHAF-FAEINSLLA-ETNMASADVAENLM 137 (236)
Q Consensus 90 ~~~~p~~~~~~~i~~~~l~~~~~~~-~~~i~~ll~-~~gls~a~i~~~l~ 137 (236)
+++.|+.+.+..|++.++......+ ...+..++. ..|++++++..++.
T Consensus 278 ~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 278 YVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp ECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999998876433222 223445554 67999998876655
No 28
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.64 E-value=2e-15 Score=135.25 Aligned_cols=133 Identities=22% Similarity=0.221 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
++.++.|.+.+..++..+..+...+ ..++++||+||||||||+++++||+.++.++
T Consensus 90 ~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~ 168 (357)
T 3d8b_A 90 EFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRAL 168 (357)
T ss_dssp HHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHH
Confidence 3566777777766666666665554 5577899999999999999999999998776
Q ss_pred --------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEE
Q 048723 60 --------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRI 89 (236)
Q Consensus 60 --------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i 89 (236)
...++||++||.++.+|++++| ||+..+
T Consensus 169 ~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--Rf~~~i 246 (357)
T 3d8b_A 169 FAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRL 246 (357)
T ss_dssp HHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHT--TCCEEE
T ss_pred HHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHh--hCceEE
Confidence 1257899999999999999999 999999
Q ss_pred ecccCCHHHHHHHHHHhhcccchhh-HHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723 90 EMSYCCFEAFMVLAKSYLDIESHAF-FAEINSLLA-ETNMASADVAENLMP 138 (236)
Q Consensus 90 ~~~~p~~~~~~~i~~~~l~~~~~~~-~~~i~~ll~-~~gls~a~i~~~l~~ 138 (236)
+++.|+.+.+..++..++......+ ...+..++. ..|++++++..+|..
T Consensus 247 ~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 247 YIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp ECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred EeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 9999999999999998875432221 233444554 679999998866653
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.62 E-value=1.1e-15 Score=133.59 Aligned_cols=83 Identities=20% Similarity=0.117 Sum_probs=70.9
Q ss_pred hhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc---------------------------------------------
Q 048723 25 KIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL--------------------------------------------- 59 (236)
Q Consensus 25 ~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~--------------------------------------------- 59 (236)
..+..+++++||+||||||||+++++||+.++.++
T Consensus 30 ~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD 109 (293)
T 3t15_A 30 LPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLD 109 (293)
T ss_dssp CTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechh
Confidence 34677788999999999999999999999998877
Q ss_pred -------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCH
Q 048723 60 -------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCF 96 (236)
Q Consensus 60 -------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~ 96 (236)
.++++||+|||+++.+|++++|+||||..|+ .|+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~ 187 (293)
T 3t15_A 110 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 187 (293)
T ss_dssp --------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCH
T ss_pred hhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCH
Confidence 0147899999999999999999999999887 4799
Q ss_pred HHHHHHHHHhhcc
Q 048723 97 EAFMVLAKSYLDI 109 (236)
Q Consensus 97 ~~~~~i~~~~l~~ 109 (236)
+++..|++.++..
T Consensus 188 ~~r~~Il~~~~~~ 200 (293)
T 3t15_A 188 EDRIGVCTGIFRT 200 (293)
T ss_dssp HHHHHHHHHHHGG
T ss_pred HHHHHHHHHhccC
Confidence 9999999988754
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.61 E-value=1.6e-15 Score=149.08 Aligned_cols=135 Identities=25% Similarity=0.272 Sum_probs=111.4
Q ss_pred hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723 3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------- 59 (236)
Q Consensus 3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------- 59 (236)
++++++|.+.+..++.++.+|..+++.++++++|+|||||||||++++|++.++.++
T Consensus 210 ~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~v 289 (806)
T 1ypw_A 210 RKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKA 289 (806)
T ss_dssp SGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHH
Confidence 346778889898889999999999999999999999999999999999999988765
Q ss_pred ------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEec
Q 048723 60 ------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEM 91 (236)
Q Consensus 60 ------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~ 91 (236)
...++++++||+++.+|++++|++||+..+.+
T Consensus 290 f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i 369 (806)
T 1ypw_A 290 FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 369 (806)
T ss_dssp HHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECC
T ss_pred HHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhccccccccccc
Confidence 12578999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHc
Q 048723 92 SYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLM 137 (236)
Q Consensus 92 ~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~ 137 (236)
+.|+.+.+..+++.+...........+..++. ..+++++++...+.
T Consensus 370 ~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ 416 (806)
T 1ypw_A 370 GIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS 416 (806)
T ss_dssp CCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHH
Confidence 99999999999998875433222222334444 67888888765443
No 31
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.39 E-value=2.7e-13 Score=124.83 Aligned_cols=99 Identities=18% Similarity=0.192 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhhhChhHHhhhCCC-CCcceEEECCCCCChHHHHHHHHhhcCCcc-------------cC--------
Q 048723 4 KKKEEIKKDLKKFSEGKEYCAKIGKA-WKRGYLLYGPPGTGKSTMIAAMANFLNYDL-------------VG-------- 61 (236)
Q Consensus 4 ~~k~~i~~~v~~~~~~~~~~~~~~~~-~~rg~lL~GPpGtGKTtlakaia~~l~~~~-------------~~-------- 61 (236)
+.|+.+...+...+.+..++..+... ++++++|+||||||||+++++||..++.++ .|
T Consensus 22 ~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr 101 (444)
T 1g41_A 22 DAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIR 101 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHH
Confidence 45555555554444444444444333 456799999999999999999999998877 00
Q ss_pred -------------------------------------------ceEEEEe-ecCccccchHHHhcCCcccEEecccCCHH
Q 048723 62 -------------------------------------------EKGIVFT-TNYVDKLDPALIRRGRMDKRIEMSYCCFE 97 (236)
Q Consensus 62 -------------------------------------------~~~vi~t-tN~~~~ld~al~r~gR~d~~i~~~~p~~~ 97 (236)
...++++ ||+++.||++++|+||||+.|+++.|+..
T Consensus 102 ~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~ 181 (444)
T 1g41_A 102 DLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGV 181 (444)
T ss_dssp HHHHHHHHHHHHHHHHSCC-------------------------------------------------------------
T ss_pred HHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcceEEEEcCCCCc
Confidence 1112333 99999999999999999999999999876
Q ss_pred -HHHHH
Q 048723 98 -AFMVL 102 (236)
Q Consensus 98 -~~~~i 102 (236)
.+..|
T Consensus 182 ~~~~ei 187 (444)
T 1g41_A 182 SMGVEI 187 (444)
T ss_dssp ------
T ss_pred cchhhh
Confidence 44444
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.24 E-value=4.7e-11 Score=103.48 Aligned_cols=103 Identities=23% Similarity=0.302 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhhhChhHHhhhCCCCCcc---eEEECCCCCChHHHHHHHHhhcCC-------cc--------------
Q 048723 4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKRG---YLLYGPPGTGKSTMIAAMANFLNY-------DL-------------- 59 (236)
Q Consensus 4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg---~lL~GPpGtGKTtlakaia~~l~~-------~~-------------- 59 (236)
+.++.|.+.+.... .+..+..+|+...++ ++|+||||||||+++++|++.+.. ++
T Consensus 38 ~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g 116 (309)
T 3syl_A 38 PVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIG 116 (309)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTT
T ss_pred HHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhccc
Confidence 45566655554433 245566666655443 999999999999999999998732 22
Q ss_pred --------------------------------------------------cCceEEEEeecCcc-----ccchHHHhcCC
Q 048723 60 --------------------------------------------------VGEKGIVFTTNYVD-----KLDPALIRRGR 84 (236)
Q Consensus 60 --------------------------------------------------~~~~~vi~ttN~~~-----~ld~al~r~gR 84 (236)
...+++|+++|... .++|++++ |
T Consensus 117 ~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~--R 194 (309)
T 3syl_A 117 HTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRS--R 194 (309)
T ss_dssp CHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHH--H
T ss_pred ccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHH--h
Confidence 12567888887543 35788988 8
Q ss_pred cccEEecccCCHHHHHHHHHHhhcc
Q 048723 85 MDKRIEMSYCCFEAFMVLAKSYLDI 109 (236)
Q Consensus 85 ~d~~i~~~~p~~~~~~~i~~~~l~~ 109 (236)
|+..+.|+.|+.+.+..|++.++..
T Consensus 195 ~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 195 IAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp EEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred CCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999988753
No 33
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.23 E-value=1.6e-10 Score=101.54 Aligned_cols=104 Identities=12% Similarity=0.100 Sum_probs=77.3
Q ss_pred CcceEEECCCCCChHHHHHHHHhhcCCcc------------------------------------------------cC-
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------------------------------VG- 61 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------------------------------~~- 61 (236)
.++++|+||||||||+++++|+..++.++ .+
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~ 134 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYR 134 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSHHHHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccchhHHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhcc
Confidence 45699999999999999999999998776 01
Q ss_pred -------------------ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccchhhHH-HHHHH
Q 048723 62 -------------------EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFA-EINSL 121 (236)
Q Consensus 62 -------------------~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~~~~~-~i~~l 121 (236)
.+.+|++||....+++++++ |++..+.++.|+.+++..++..+.......... .+..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l 212 (338)
T 3pfi_A 135 LDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEI 212 (338)
T ss_dssp C---------CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHH
T ss_pred chhhcccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 16899999999999999998 899999999999999999988876533222222 23333
Q ss_pred HHcCCCCHHHHHHHH
Q 048723 122 LAETNMASADVAENL 136 (236)
Q Consensus 122 l~~~gls~a~i~~~l 136 (236)
+....-++.++.+.+
T Consensus 213 ~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 213 AKRSRSTPRIALRLL 227 (338)
T ss_dssp HHTTTTCHHHHHHHH
T ss_pred HHHHCcCHHHHHHHH
Confidence 333334455444443
No 34
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.12 E-value=3.9e-11 Score=110.59 Aligned_cols=30 Identities=47% Similarity=0.653 Sum_probs=27.2
Q ss_pred CCCCCcceEEECCCCCChHHHHHHHHhhcC
Q 048723 27 GKAWKRGYLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 27 ~~~~~rg~lL~GPpGtGKTtlakaia~~l~ 56 (236)
+..+++++||+||||||||+++++||+.++
T Consensus 59 ~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 59 KKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 455678899999999999999999999987
No 35
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.09 E-value=8.1e-10 Score=102.24 Aligned_cols=76 Identities=24% Similarity=0.351 Sum_probs=62.7
Q ss_pred CcceEEECCCCCChHHHHHHHHhhc----------CCcc-----------------------------------------
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFL----------NYDL----------------------------------------- 59 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l----------~~~~----------------------------------------- 59 (236)
..++||+||||||||+++++|+..+ +.++
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD~~~~a~ 280 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFIDAAIDAS 280 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHHHHHHHHTCCCCEEEECC-----
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccchHHHHHHHHHHHHHhcCCeEEEEeCchhHH
Confidence 4569999999999999999999986 2211
Q ss_pred --------cCceEEEEeecCcc-----ccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcc
Q 048723 60 --------VGEKGIVFTTNYVD-----KLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDI 109 (236)
Q Consensus 60 --------~~~~~vi~ttN~~~-----~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~ 109 (236)
.+.+.+|++||... .+|++++| ||. .|.++.|+.+.+..|++.++..
T Consensus 281 ~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 281 NILKPSLARGELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp ---CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTT
T ss_pred HHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHH
Confidence 23578889999887 68999999 996 5999999999999999977543
No 36
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.07 E-value=1.2e-09 Score=93.34 Aligned_cols=33 Identities=30% Similarity=0.473 Sum_probs=28.7
Q ss_pred CCCCCcceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723 27 GKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL 59 (236)
Q Consensus 27 ~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~ 59 (236)
+...+++++|+||||||||+++++|+..++.++
T Consensus 60 ~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~ 92 (272)
T 1d2n_A 60 DRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF 92 (272)
T ss_dssp SSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE
T ss_pred CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 455667799999999999999999999988765
No 37
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.05 E-value=1.6e-09 Score=95.06 Aligned_cols=77 Identities=22% Similarity=0.292 Sum_probs=62.5
Q ss_pred CcceEEECCCCCChHHHHHHHHhhcCCcc---------------------------------------------------
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFLNYDL--------------------------------------------------- 59 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l~~~~--------------------------------------------------- 59 (236)
..+++|+||||||||+++++|++.++.++
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~~~ 125 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPAKV 125 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEEEEEECTTCSSEEEEETGGGSCHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCceEeccCcccccEEEEEccccCCHHH
Confidence 35699999999999999999999876543
Q ss_pred ----------------------cCceEEEEeecCcc-----ccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcc
Q 048723 60 ----------------------VGEKGIVFTTNYVD-----KLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDI 109 (236)
Q Consensus 60 ----------------------~~~~~vi~ttN~~~-----~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~ 109 (236)
....++++|+|..+ .+++++++ ||+..+.+++|+.+.+..|++.+...
T Consensus 126 ~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 126 QSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp HHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 01346667777543 38999999 99888999999999999999887653
No 38
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.03 E-value=4.2e-10 Score=107.24 Aligned_cols=42 Identities=36% Similarity=0.414 Sum_probs=30.3
Q ss_pred HhhhChhHHhhhCCCCCc--ceEEECCCCCChHHHHHHHHhhcC
Q 048723 15 KFSEGKEYCAKIGKAWKR--GYLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 15 ~~~~~~~~~~~~~~~~~r--g~lL~GPpGtGKTtlakaia~~l~ 56 (236)
.++....+++.+.+.... .++|+|||||||||++++|++.+.
T Consensus 42 ~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred eEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 334444555555544433 499999999999999999998763
No 39
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.01 E-value=1.3e-09 Score=94.78 Aligned_cols=105 Identities=16% Similarity=0.148 Sum_probs=78.2
Q ss_pred CcceEEECCCCCChHHHHHHHHhhcCCcc-------------------------------------------------c-
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFLNYDL-------------------------------------------------V- 60 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l~~~~-------------------------------------------------~- 60 (236)
.++++|+||||||||+++++|+..++.++ .
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~ 117 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDF 117 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHHHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHS
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChHHHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhh
Confidence 45699999999999999999999887665 0
Q ss_pred -------------------CceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccchhhH-HHHHH
Q 048723 61 -------------------GEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFF-AEINS 120 (236)
Q Consensus 61 -------------------~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~~~~-~~i~~ 120 (236)
..+.+|++||....+++++++ |++..+.++.|+.+++..++..++........ ..+..
T Consensus 118 ~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~ 195 (324)
T 1hqc_A 118 VMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALE 195 (324)
T ss_dssp EEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHH
T ss_pred hhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 125799999999999999988 89889999999999999898887643222221 22344
Q ss_pred HHHcCCCCHHHHHHHHc
Q 048723 121 LLAETNMASADVAENLM 137 (236)
Q Consensus 121 ll~~~gls~a~i~~~l~ 137 (236)
++...+-.+.++.+.+.
T Consensus 196 l~~~~~G~~r~l~~~l~ 212 (324)
T 1hqc_A 196 IGRRSRGTMRVAKRLFR 212 (324)
T ss_dssp HHHHSCSCHHHHHHHHH
T ss_pred HHHHccCCHHHHHHHHH
Confidence 44434445666665544
No 40
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.01 E-value=2e-09 Score=87.24 Aligned_cols=73 Identities=23% Similarity=0.286 Sum_probs=59.7
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCCc-----c------------------------------------------------
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNYD-----L------------------------------------------------ 59 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~~-----~------------------------------------------------ 59 (236)
.++|+||||||||+++++++..+... +
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~ 119 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQ 119 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHH
Confidence 49999999999999999999875211 1
Q ss_pred ----------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 60 ----------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 60 ----------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
.....+|+++|....+++++.+ |+. .+.++.++.++...++..++.
T Consensus 120 ~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~ 175 (226)
T 2chg_A 120 AALRRTMEMYSKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICE 175 (226)
T ss_dssp HHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHH
Confidence 2367889999999999999988 775 889999999888888877653
No 41
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.99 E-value=3e-09 Score=92.90 Aligned_cols=74 Identities=26% Similarity=0.279 Sum_probs=61.6
Q ss_pred CCcceEEECCCCCChHHHHHHHHhhcCCcc--------------------------------------------------
Q 048723 30 WKRGYLLYGPPGTGKSTMIAAMANFLNYDL-------------------------------------------------- 59 (236)
Q Consensus 30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~~-------------------------------------------------- 59 (236)
.+..++++||||||||+++++|++.++.++
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L 126 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHL 126 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCCHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHH
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccCHHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHH
Confidence 345588899999999999999999987665
Q ss_pred -------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHh
Q 048723 60 -------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSY 106 (236)
Q Consensus 60 -------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~ 106 (236)
...+.+|+++|++..+++++++ |+ ..+.|+.|+.+++..++..+
T Consensus 127 ~~~le~~~~~~~iI~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~e~~~il~~~ 177 (324)
T 3u61_B 127 RSFMEAYSSNCSIIITANNIDGIIKPLQS--RC-RVITFGQPTDEDKIEMMKQM 177 (324)
T ss_dssp HHHHHHHGGGCEEEEEESSGGGSCTTHHH--HS-EEEECCCCCHHHHHHHHHHH
T ss_pred HHHHHhCCCCcEEEEEeCCccccCHHHHh--hC-cEEEeCCCCHHHHHHHHHHH
Confidence 2368899999999999999999 77 47999999988877665554
No 42
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.98 E-value=8.9e-10 Score=97.44 Aligned_cols=75 Identities=24% Similarity=0.291 Sum_probs=61.6
Q ss_pred cceEEECCCCCChHHHHHHHHhhcCCcc------------------------------------------------cC--
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------------------------------VG-- 61 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------------------------------~~-- 61 (236)
..++|+||||||||||+++||+.++.++ ..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~ 131 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQI 131 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhccc
Confidence 4599999999999999999999985443 00
Q ss_pred ------------------ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 62 ------------------EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 62 ------------------~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
...++.+++++..|++++++ |+...+.++.++.+.+..+++.+..
T Consensus 132 ~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 132 DIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp CC---------------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred ceeeccCcccccccccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHH
Confidence 13556688889999999998 8988889999999999988887653
No 43
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.96 E-value=2.2e-09 Score=92.47 Aligned_cols=42 Identities=17% Similarity=0.151 Sum_probs=35.2
Q ss_pred eEEEEe----ecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHh
Q 048723 63 KGIVFT----TNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSY 106 (236)
Q Consensus 63 ~~vi~t----tN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~ 106 (236)
+++|++ ++.+..+++++++ ||+..+.|+.|+.+++..|++..
T Consensus 169 ~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~ 214 (310)
T 1ofh_A 169 ILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEP 214 (310)
T ss_dssp CEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSS
T ss_pred EEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhh
Confidence 466777 4577889999998 99988999999999999888853
No 44
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.96 E-value=1.4e-09 Score=96.35 Aligned_cols=36 Identities=6% Similarity=-0.048 Sum_probs=30.0
Q ss_pred CccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcc
Q 048723 71 YVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDI 109 (236)
Q Consensus 71 ~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~ 109 (236)
.+..+++++++ |+.. +.|+.|+.+++..+++.++..
T Consensus 239 ~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 239 SPHGIPIDLLD--RLLI-VSTTPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp EETTCCHHHHT--TEEE-EEECCCCHHHHHHHHHHHHHH
T ss_pred CcccCCHHHHh--hccE-EEecCCCHHHHHHHHHHHHHH
Confidence 57789999999 8854 799999999999999877653
No 45
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.95 E-value=2.7e-09 Score=92.24 Aligned_cols=45 Identities=16% Similarity=0.290 Sum_probs=39.0
Q ss_pred ceEEEEeecC--------------------------ccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 62 EKGIVFTTNY--------------------------VDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 62 ~~~vi~ttN~--------------------------~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
++++|+|||. ...++++++. |++..+.+..|+.+.+..|+..++.
T Consensus 160 ~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~ 230 (311)
T 4fcw_A 160 NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMS 230 (311)
T ss_dssp TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTH
T ss_pred CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 5669999998 5578899987 9999999999999999999998764
No 46
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.94 E-value=4.3e-09 Score=92.10 Aligned_cols=75 Identities=20% Similarity=0.322 Sum_probs=58.5
Q ss_pred CcceEEECCCCCChHHHHHHHHhhc---CCcc------------------------------------------------
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFL---NYDL------------------------------------------------ 59 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l---~~~~------------------------------------------------ 59 (236)
.++++|+|||||||||++++|++.+ +.++
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~~~~~ 116 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERT 116 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTCHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccCChHH
Confidence 4569999999999999999999988 5554
Q ss_pred -------------cCceEEEEeecCcc---ccchHHHhcCCcc--cEEecccCCHHHHHHHHHHhhc
Q 048723 60 -------------VGEKGIVFTTNYVD---KLDPALIRRGRMD--KRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 60 -------------~~~~~vi~ttN~~~---~ld~al~r~gR~d--~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
.+..+|+++++.+. .+++++++ |++ ..+.++. +.+++..++..++.
T Consensus 117 ~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~ 180 (324)
T 1l8q_A 117 QIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLK 180 (324)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHH
Confidence 22445555555555 68899998 664 6788888 99999999888764
No 47
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.94 E-value=3.3e-09 Score=97.79 Aligned_cols=74 Identities=27% Similarity=0.423 Sum_probs=61.7
Q ss_pred cceEEECCCCCChHHHHHHHHhhcCCcc----------------------------------------------------
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLNYDL---------------------------------------------------- 59 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~~~~---------------------------------------------------- 59 (236)
++++|+|||||||||++++|++.++.++
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~l 130 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHI 130 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHH
Confidence 4699999999999999999999998876
Q ss_pred -cCceEEEEee--cCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 60 -VGEKGIVFTT--NYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 60 -~~~~~vi~tt--N~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
.+.+.+|++| |....+++++++ |+ .++.+..|+.+.+..++..++.
T Consensus 131 e~~~v~lI~att~n~~~~l~~aL~s--R~-~v~~l~~l~~edi~~il~~~l~ 179 (447)
T 3pvs_A 131 EDGTITFIGATTENPSFELNSALLS--RA-RVYLLKSLSTEDIEQVLTQAME 179 (447)
T ss_dssp HTTSCEEEEEESSCGGGSSCHHHHT--TE-EEEECCCCCHHHHHHHHHHHHH
T ss_pred hcCceEEEecCCCCcccccCHHHhC--ce-eEEeeCCcCHHHHHHHHHHHHH
Confidence 3466777776 566689999999 66 4678999999999988888764
No 48
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.92 E-value=3.8e-09 Score=86.41 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=37.6
Q ss_pred ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
...+|++||....+++++++ |+ ..+.++.++.++...++..++.
T Consensus 156 ~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~ 199 (250)
T 1njg_A 156 HVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILN 199 (250)
T ss_dssp TEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHH
Confidence 67889999999999999888 65 7789999999999988887764
No 49
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.92 E-value=1.1e-09 Score=86.71 Aligned_cols=39 Identities=23% Similarity=0.212 Sum_probs=31.4
Q ss_pred ceEEEEeecCcc-----ccchHHHhcCCcccEEecccCCHHHHHHHH
Q 048723 62 EKGIVFTTNYVD-----KLDPALIRRGRMDKRIEMSYCCFEAFMVLA 103 (236)
Q Consensus 62 ~~~vi~ttN~~~-----~ld~al~r~gR~d~~i~~~~p~~~~~~~i~ 103 (236)
.+.+|+++|... .+++++++ ||+ .+.+..|+.+++..++
T Consensus 151 ~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 151 ELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp SCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred CeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 567888888776 68899988 886 6899999998877653
No 50
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.87 E-value=1.1e-08 Score=89.82 Aligned_cols=44 Identities=18% Similarity=0.119 Sum_probs=35.5
Q ss_pred ceEEEEeecCcc-ccchHHHhcCCcccEEecccC-CHHHHHHHHHHhh
Q 048723 62 EKGIVFTTNYVD-KLDPALIRRGRMDKRIEMSYC-CFEAFMVLAKSYL 107 (236)
Q Consensus 62 ~~~vi~ttN~~~-~ld~al~r~gR~d~~i~~~~p-~~~~~~~i~~~~l 107 (236)
..++|+++|..+ .+++++++ ||+..+.++.| +.+.+..|+..++
T Consensus 187 ~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~~ 232 (350)
T 1g8p_A 187 RFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRRD 232 (350)
T ss_dssp CEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHHH
Confidence 567889999755 89999999 99888999999 5777767777643
No 51
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.87 E-value=2e-09 Score=88.93 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=55.8
Q ss_pred CcceEEECCCCCChHHHHHHHHhhcCC---cc------------------------------------------------
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFLNY---DL------------------------------------------------ 59 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l~~---~~------------------------------------------------ 59 (236)
.++++|+||||||||+++++|+..+.. .+
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~ 131 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTALLEGLEQFDLICIDDVDAVAGHPLWEEAIFDLYN 131 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGGGGTTGGGSSEEEEETGGGGTTCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHHhccCCCEEEEeccccccCCHHHHHHHHHHHH
Confidence 456999999999999999999987642 11
Q ss_pred ----cCceEEEEeecC-cc---ccchHHHhcCCcc--cEEecccCCHHHHHHHHHHhhc
Q 048723 60 ----VGEKGIVFTTNY-VD---KLDPALIRRGRMD--KRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 60 ----~~~~~vi~ttN~-~~---~ld~al~r~gR~d--~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
.+...+|+++|. +. .+++++.+ |+. ..+.++.|+.+.+..++..++.
T Consensus 132 ~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~ 188 (242)
T 3bos_A 132 RVAEQKRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAA 188 (242)
T ss_dssp HHHHHCSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHH
T ss_pred HHHHcCCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHH
Confidence 112235666653 32 45678887 554 8899999999999988887764
No 52
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.85 E-value=1.8e-08 Score=98.25 Aligned_cols=76 Identities=24% Similarity=0.349 Sum_probs=63.5
Q ss_pred CCcceEEECCCCCChHHHHHHHHhhc----------CCcc----------------------------------------
Q 048723 30 WKRGYLLYGPPGTGKSTMIAAMANFL----------NYDL---------------------------------------- 59 (236)
Q Consensus 30 ~~rg~lL~GPpGtGKTtlakaia~~l----------~~~~---------------------------------------- 59 (236)
.+.++||+||||||||+++++||..+ +..+
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD~~~~~ 279 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFIDAAIDA 279 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHHHHHHHHTCCCCEEEECC----
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccccchHHHHHHHHHHHHHhcCCEEEEEcCchhH
Confidence 34569999999999999999999986 2211
Q ss_pred ---------cCceEEEEeecCcc-----ccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 60 ---------VGEKGIVFTTNYVD-----KLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 60 ---------~~~~~vi~ttN~~~-----~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
.+.+.+|++||... .+|++++| || ..|.++.|+.+.+..|++.+..
T Consensus 280 ~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 280 SNILKPSLARGELQCIGATTLDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp ----CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHH
Confidence 24678889999888 79999999 99 5699999999999999997654
No 53
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.82 E-value=2.7e-08 Score=88.60 Aligned_cols=30 Identities=33% Similarity=0.610 Sum_probs=27.0
Q ss_pred CCcceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723 30 WKRGYLLYGPPGTGKSTMIAAMANFLNYDL 59 (236)
Q Consensus 30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~~ 59 (236)
.+++++|+||||||||+++++||..++.+|
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~ 79 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPF 79 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 356699999999999999999999998777
No 54
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.82 E-value=4.2e-09 Score=96.74 Aligned_cols=76 Identities=20% Similarity=0.341 Sum_probs=57.5
Q ss_pred CcceEEECCCCCChHHHHHHHHhhc-----CCcc----------------------------------------------
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFL-----NYDL---------------------------------------------- 59 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l-----~~~~---------------------------------------------- 59 (236)
..+++|+||||||||||+++|++.+ +..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 4569999999999999999999987 3333
Q ss_pred ---------------cCceEEEEeec-Cccc---cchHHHhcCCcc--cEEecccCCHHHHHHHHHHhhc
Q 048723 60 ---------------VGEKGIVFTTN-YVDK---LDPALIRRGRMD--KRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 60 ---------------~~~~~vi~ttN-~~~~---ld~al~r~gR~d--~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
..+..+|++|+ .+.. +++++++ |++ ..+.++.|+.+.+..++..++.
T Consensus 210 ~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~ 277 (440)
T 2z4s_A 210 TGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLE 277 (440)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 11234444554 4444 8899998 664 7889999999999999887764
No 55
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.78 E-value=6.1e-09 Score=93.31 Aligned_cols=56 Identities=23% Similarity=0.385 Sum_probs=46.4
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
...++.++++.+.+| +.|+||||||||||+++|++.+.++ .|-|.+....+..+++
T Consensus 27 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~ 84 (355)
T 1z47_A 27 GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPP 84 (355)
T ss_dssp STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCG
T ss_pred CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCCh
Confidence 345788899999888 8899999999999999999999887 7777777666655655
No 56
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.78 E-value=2.1e-09 Score=97.17 Aligned_cols=58 Identities=21% Similarity=0.348 Sum_probs=49.6
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA 78 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a 78 (236)
.....++++++.+.+| +.|+||||||||||+++|++.+.++ .|-|.+....+..+++.
T Consensus 14 g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~ 73 (381)
T 3rlf_A 14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPA 73 (381)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGG
T ss_pred CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHH
Confidence 4455788999999998 8899999999999999999999888 78888887777777764
No 57
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.77 E-value=7.1e-09 Score=93.20 Aligned_cols=138 Identities=14% Similarity=0.198 Sum_probs=82.9
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh--cCCcccEEecc--cC
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR--RGRMDKRIEMS--YC 94 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r--~gR~d~~i~~~--~p 94 (236)
..+++++|.+++| +.|+||||||||||+++|++.+.++ .|-|.+...++..+++.-++ +.++.++++-+ +|
T Consensus 42 ~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~ 118 (366)
T 3tui_C 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLS 118 (366)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCT
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCC
Confidence 3688899999999 8899999999999999999999888 78888888888777764332 11454444321 12
Q ss_pred CHHHHHHH--HHHhhcccchhhHHHHHHHHHc-----------CCCCHHHHHHHHcccccccChH-------------HH
Q 048723 95 CFEAFMVL--AKSYLDIESHAFFAEINSLLAE-----------TNMASADVAENLMPKSDEEDAD-------------SC 148 (236)
Q Consensus 95 ~~~~~~~i--~~~~l~~~~~~~~~~i~~ll~~-----------~gls~a~i~~~l~~~~~~~~~~-------------~~ 148 (236)
...-+..+ ...+.+.........+..+++. ..+|+++-+...++++....+. ..
T Consensus 119 ~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~ 198 (366)
T 3tui_C 119 SRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPAT 198 (366)
T ss_dssp TSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHH
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHH
Confidence 21222222 1122222222223334444332 3679998887777644443322 24
Q ss_pred HHHHHHHHHHHHH
Q 048723 149 LKNLIEALKVAKE 161 (236)
Q Consensus 149 ~~~~~~~L~~~~~ 161 (236)
...++..|++..+
T Consensus 199 ~~~i~~lL~~l~~ 211 (366)
T 3tui_C 199 TRSILELLKDINR 211 (366)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555556655443
No 58
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.75 E-value=3.2e-08 Score=96.23 Aligned_cols=45 Identities=18% Similarity=0.199 Sum_probs=38.4
Q ss_pred ceEEEEeecCcc-------------------------ccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 62 EKGIVFTTNYVD-------------------------KLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 62 ~~~vi~ttN~~~-------------------------~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
+++||+|||... .++|+++. |+|.+|.|+.++.+.+..|+..++.
T Consensus 598 ~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 598 NVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_dssp TEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred CeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHH
Confidence 466999999743 67889988 9999999999999999999998764
No 59
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.75 E-value=6.7e-09 Score=93.29 Aligned_cols=58 Identities=29% Similarity=0.411 Sum_probs=47.9
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA 78 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a 78 (236)
....++.++++.+.+| +.|+||||||||||+++|++.+.++ .|-|.+....+..+++.
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~ 73 (362)
T 2it1_A 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPK 73 (362)
T ss_dssp SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGG
T ss_pred CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHh
Confidence 3345788899999888 7899999999999999999999887 77787777666666653
No 60
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.73 E-value=4.3e-08 Score=95.52 Aligned_cols=74 Identities=20% Similarity=0.377 Sum_probs=59.3
Q ss_pred ceEEECCCCCChHHHHHHHHhhc---CCcc--------------------------------------------------
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFL---NYDL-------------------------------------------------- 59 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l---~~~~-------------------------------------------------- 59 (236)
++||+||||||||+++++|+..+ +.++
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~ 602 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQV 602 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHH
Confidence 49999999999999999999987 2222
Q ss_pred ---------------cCceEEEEeecCccc------------cchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 60 ---------------VGEKGIVFTTNYVDK------------LDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 60 ---------------~~~~~vi~ttN~~~~------------ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
..++++|+|||.... ++|+++. |+|.+|.|+.|+.+.+..|+..++.
T Consensus 603 le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~ 676 (758)
T 3pxi_A 603 LEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSD 676 (758)
T ss_dssp HHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHH
T ss_pred hccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHH
Confidence 114689999996443 7888888 9999999999999999999988763
No 61
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.71 E-value=7e-09 Score=89.80 Aligned_cols=49 Identities=27% Similarity=0.381 Sum_probs=42.5
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV 72 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~ 72 (236)
.+++++++.+++| +.|+||||||||||+++|++.+.+. .|-|.+.+.++
T Consensus 22 ~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i 72 (275)
T 3gfo_A 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEC
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEEC
Confidence 3788999999998 8899999999999999999999887 67777766555
No 62
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.70 E-value=1.3e-07 Score=83.40 Aligned_cols=45 Identities=7% Similarity=-0.009 Sum_probs=34.9
Q ss_pred ceEEEEeecCccccc----hHHHhcCCcc-cEEecccCCHHHHHHHHHHhhc
Q 048723 62 EKGIVFTTNYVDKLD----PALIRRGRMD-KRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 62 ~~~vi~ttN~~~~ld----~al~r~gR~d-~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
.+++|+.+|.++..+ +++++ |++ ..|.|+.++.++...|++..+.
T Consensus 163 ~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 163 KLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred cEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 678899999886543 34445 675 6789999999999999888764
No 63
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.70 E-value=1.5e-07 Score=81.12 Aligned_cols=73 Identities=23% Similarity=0.289 Sum_probs=59.3
Q ss_pred ceEEECCCCCChHHHHHHHHhhcC-Cc----c------------------------------------------------
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLN-YD----L------------------------------------------------ 59 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~-~~----~------------------------------------------------ 59 (236)
.++|+||||||||++++++++.+. .. +
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~ 119 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQ 119 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHH
Confidence 399999999999999999998751 10 1
Q ss_pred ----------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 60 ----------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 60 ----------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
.....+|+++|.+..+++++.+ |+ ..+.|..|+.+++..++..++.
T Consensus 120 ~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~ 175 (319)
T 2chq_A 120 AALRRTMEMYSKSCRFILSCNYVSRIIEPIQS--RC-AVFRFKPVPKEAMKKRLLEICE 175 (319)
T ss_dssp HTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT--TC-EEEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEeCChhhcchHHHh--hC-eEEEecCCCHHHHHHHHHHHHH
Confidence 2367889999999999999988 66 4789999999888888877654
No 64
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.70 E-value=9.1e-09 Score=86.26 Aligned_cols=56 Identities=25% Similarity=0.322 Sum_probs=45.8
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
...++.++++.+.+| +.|+||||||||||+++|++.+.+. .|-|.+....+..+++
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~ 73 (224)
T 2pcj_A 16 GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNE 73 (224)
T ss_dssp TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCH
T ss_pred CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCH
Confidence 345788899999888 8899999999999999999999877 6777776666655554
No 65
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.69 E-value=3.2e-09 Score=91.48 Aligned_cols=61 Identities=16% Similarity=0.344 Sum_probs=50.4
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
....+++++++.+.+| +.|+||||||||||+++|++.+.+. .|-|.+.+..+..+++..++
T Consensus 22 ~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~ 84 (266)
T 4g1u_C 22 QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALA 84 (266)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHH
T ss_pred CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHh
Confidence 3455788899999988 8899999999999999999999887 77788777777777765444
No 66
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.69 E-value=6.6e-09 Score=89.03 Aligned_cols=53 Identities=23% Similarity=0.324 Sum_probs=43.0
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccc
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDK 74 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ 74 (236)
...++.++++.+.+| +.|+||||+|||||+++|++.+.+. .|.|.+....+..
T Consensus 27 ~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~ 81 (256)
T 1vpl_A 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVE 81 (256)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTT
T ss_pred CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCc
Confidence 345788889999888 8899999999999999999999877 6777766544433
No 67
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.68 E-value=3.8e-09 Score=94.74 Aligned_cols=53 Identities=21% Similarity=0.379 Sum_probs=44.4
Q ss_pred hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723 17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV 72 (236)
Q Consensus 17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~ 72 (236)
|.....++++++.+.+| +.|+||||||||||+++|++.+.++ .|-|.+....+
T Consensus 14 y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i 68 (359)
T 3fvq_A 14 FQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTI 68 (359)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEE
T ss_pred ECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEC
Confidence 34455788999999998 8899999999999999999999888 67777766554
No 68
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.68 E-value=7.9e-09 Score=87.28 Aligned_cols=55 Identities=24% Similarity=0.327 Sum_probs=47.1
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA 78 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a 78 (236)
.+++++++.+.+| +.|+||||||||||+++|++.+.+. .|-|.+...++..+++.
T Consensus 19 ~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~ 75 (235)
T 3tif_A 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDD 75 (235)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHH
T ss_pred eeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHH
Confidence 3688899999988 8899999999999999999999888 78888877767666654
No 69
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.68 E-value=5.7e-09 Score=88.40 Aligned_cols=57 Identities=23% Similarity=0.331 Sum_probs=46.6
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA 78 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a 78 (236)
...++.++++.+++| +.|+||||+|||||+++|++.+.+. .|.|.+....+...++.
T Consensus 18 ~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 76 (240)
T 1ji0_A 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAH 76 (240)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHH
T ss_pred CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHH
Confidence 344788899999888 8899999999999999999999877 77777776666555554
No 70
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.67 E-value=5.1e-09 Score=94.38 Aligned_cols=57 Identities=30% Similarity=0.412 Sum_probs=47.4
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA 78 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a 78 (236)
...++.++++.+.+| +.|+||||||||||+++|++.+.+. .|.|.+....+..+++.
T Consensus 23 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~ 81 (372)
T 1v43_A 23 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPK 81 (372)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGG
T ss_pred CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChh
Confidence 344688899999888 7899999999999999999999887 78788777666666653
No 71
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.66 E-value=2.1e-08 Score=95.51 Aligned_cols=73 Identities=25% Similarity=0.254 Sum_probs=58.4
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCCcc-----------------------------------------------------
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNYDL----------------------------------------------------- 59 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~~~----------------------------------------------------- 59 (236)
++||+||||||||+++++|+..+++.+
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~~q 408 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDR 408 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSHHH
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCCHhHh
Confidence 599999999999999999999886432
Q ss_pred -----------------------cCceEEEEeecCcc-------------ccchHHHhcCCccc-EEecccCCHHHHHHH
Q 048723 60 -----------------------VGEKGIVFTTNYVD-------------KLDPALIRRGRMDK-RIEMSYCCFEAFMVL 102 (236)
Q Consensus 60 -----------------------~~~~~vi~ttN~~~-------------~ld~al~r~gR~d~-~i~~~~p~~~~~~~i 102 (236)
.....||+|+|+.. .|++++++ |||. .+..++|+.+ ...|
T Consensus 409 ~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i 485 (595)
T 3f9v_A 409 VAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DREL 485 (595)
T ss_dssp HHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHH
T ss_pred hhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHH
Confidence 11456999999887 89999999 9985 4566778777 7777
Q ss_pred HHHhhc
Q 048723 103 AKSYLD 108 (236)
Q Consensus 103 ~~~~l~ 108 (236)
.++.+.
T Consensus 486 ~~~il~ 491 (595)
T 3f9v_A 486 ANYILD 491 (595)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 776654
No 72
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.66 E-value=6.1e-07 Score=79.40 Aligned_cols=45 Identities=11% Similarity=0.310 Sum_probs=38.4
Q ss_pred ceEEEEeecCc---cccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 62 EKGIVFTTNYV---DKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 62 ~~~vi~ttN~~---~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
.+.+|++||.. +.+++++++ |++..+.++.++.++...++..++.
T Consensus 164 ~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 164 NISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp CEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred ceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHH
Confidence 56788999987 678999888 8877999999999999999988754
No 73
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.66 E-value=1.8e-07 Score=82.51 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=37.5
Q ss_pred CceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 61 GEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 61 ~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
..+++|++|+.+..+++.+++ |. ..+.+..|+.++...++..++.
T Consensus 148 ~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~ 192 (373)
T 1jr3_A 148 EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILN 192 (373)
T ss_dssp SSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHH
T ss_pred CceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHH
Confidence 367888999999999999887 55 6789999999998888887664
No 74
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.66 E-value=2.2e-08 Score=79.22 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=23.2
Q ss_pred CCcceEEECCCCCChHHHHHHHHhhc
Q 048723 30 WKRGYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 30 ~~rg~lL~GPpGtGKTtlakaia~~l 55 (236)
..++++|+||||||||+++++++..+
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34569999999999999999999987
No 75
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.66 E-value=8.6e-08 Score=89.50 Aligned_cols=43 Identities=21% Similarity=0.091 Sum_probs=32.1
Q ss_pred eEEEEeecCccc---cchHHHhcCCcccEEecccCCH-HHHHHHHHHhh
Q 048723 63 KGIVFTTNYVDK---LDPALIRRGRMDKRIEMSYCCF-EAFMVLAKSYL 107 (236)
Q Consensus 63 ~~vi~ttN~~~~---ld~al~r~gR~d~~i~~~~p~~-~~~~~i~~~~l 107 (236)
.++|++||.+.. +.+++++ ||...+.+++|+. +.+..|++.+.
T Consensus 150 ~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 150 RLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp CEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred hhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhccc
Confidence 356888886433 4458998 8989999999987 66777777654
No 76
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.66 E-value=8.9e-08 Score=82.77 Aligned_cols=73 Identities=22% Similarity=0.270 Sum_probs=58.6
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCCc-----c------------------------------------------------
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNYD-----L------------------------------------------------ 59 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~~-----~------------------------------------------------ 59 (236)
.++|+||||||||++++++++.+... +
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~ 127 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQ 127 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHH
Confidence 39999999999999999999875211 0
Q ss_pred ----------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 60 ----------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 60 ----------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
.....+|+++|.+..+++++.+ |+. .+.|+.++.+....++..++.
T Consensus 128 ~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~ 183 (327)
T 1iqp_A 128 QALRRTMEMFSSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAE 183 (327)
T ss_dssp HHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHH
Confidence 2367888899999999999988 664 788888998888888776653
No 77
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.65 E-value=6e-09 Score=93.50 Aligned_cols=58 Identities=24% Similarity=0.365 Sum_probs=47.9
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA 78 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a 78 (236)
....++.++++.+.+| +.|+||||||||||+++|++.+.++ .|-|.+....+..+++.
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~ 73 (359)
T 2yyz_A 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPK 73 (359)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGG
T ss_pred CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChh
Confidence 3345688899999888 8899999999999999999999887 77788777666666653
No 78
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.64 E-value=2.1e-08 Score=89.58 Aligned_cols=54 Identities=24% Similarity=0.469 Sum_probs=46.0
Q ss_pred HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723 22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA 78 (236)
Q Consensus 22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a 78 (236)
++.++++.+.+| +.|+||||||||||+++|++...++ .|.|.+....+..+++.
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~ 70 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPE 70 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchh
Confidence 788899999888 8899999999999999999999887 77787777666666653
No 79
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.64 E-value=2.5e-07 Score=81.63 Aligned_cols=43 Identities=12% Similarity=-0.033 Sum_probs=36.2
Q ss_pred ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723 62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL 107 (236)
Q Consensus 62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l 107 (236)
..++|++||+++.+++.+++ |. ..+.|+.|+.++...++....
T Consensus 138 ~~~~Il~t~~~~~l~~ti~S--Rc-~~~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 138 ETWFFLATREPERLLATLRS--RC-RLHYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp TEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHC
T ss_pred CeEEEEEeCChHhCcHHHhh--cc-eeeeCCCCCHHHHHHHHHHhc
Confidence 67888999999999999998 54 568999999988888777665
No 80
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.64 E-value=1.8e-07 Score=87.35 Aligned_cols=30 Identities=47% Similarity=0.781 Sum_probs=26.0
Q ss_pred CCcceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723 30 WKRGYLLYGPPGTGKSTMIAAMANFLNYDL 59 (236)
Q Consensus 30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~~ 59 (236)
..++++|+||||||||+++++||+.++.++
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~ 105 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDI 105 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 457799999999999999999999876544
No 81
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.63 E-value=2.6e-08 Score=85.41 Aligned_cols=51 Identities=22% Similarity=0.361 Sum_probs=42.5
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV 72 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~ 72 (236)
...+++++++.+.+| +.|+||||||||||+++|++.+.+. .|-|.+.+..+
T Consensus 18 ~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~ 70 (262)
T 1b0u_A 18 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNI 70 (262)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEC
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEc
Confidence 345788899999998 8899999999999999999999877 67777665444
No 82
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.63 E-value=6e-08 Score=85.49 Aligned_cols=71 Identities=32% Similarity=0.479 Sum_probs=54.1
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc---------------------------------c---------------------
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD---------------------------------L--------------------- 59 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~---------------------------------~--------------------- 59 (236)
++|+|||||||||+++++++.+... +
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~ 128 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQN 128 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHH
Confidence 9999999999999999999975211 0
Q ss_pred ---------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723 60 ---------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL 107 (236)
Q Consensus 60 ---------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l 107 (236)
.....+++++|.+..+++++++ |. ..+.|..++.+.....+...+
T Consensus 129 ~L~~~le~~~~~~~~il~~n~~~~i~~~i~s--R~-~~~~~~~l~~~~~~~~l~~~~ 182 (340)
T 1sxj_C 129 ALRRVIERYTKNTRFCVLANYAHKLTPALLS--QC-TRFRFQPLPQEAIERRIANVL 182 (340)
T ss_dssp HHHHHHHHTTTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCeEEEEEecCccccchhHHh--hc-eeEeccCCCHHHHHHHHHHHH
Confidence 1235677888999999999988 65 467887777777766666554
No 83
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.63 E-value=1.5e-07 Score=82.41 Aligned_cols=43 Identities=9% Similarity=0.057 Sum_probs=34.8
Q ss_pred ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723 62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL 107 (236)
Q Consensus 62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l 107 (236)
...+|+++|++..+++++++ |+. .+.+..++.+....++...+
T Consensus 163 ~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~ 205 (353)
T 1sxj_D 163 VTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFIS 205 (353)
T ss_dssp TEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHH
T ss_pred CceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHH
Confidence 45678889999999999998 664 78888888888887777654
No 84
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.62 E-value=7.6e-09 Score=93.25 Aligned_cols=54 Identities=22% Similarity=0.329 Sum_probs=43.5
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccc
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDK 74 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ 74 (236)
....++.++++.+.+| +.|+||||||||||+++|++.+.++ .|.|.+....+..
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~ 69 (372)
T 1g29_1 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVAD 69 (372)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEE
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECcc
Confidence 3345688899999888 8899999999999999999999887 6777665544433
No 85
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.61 E-value=2.6e-08 Score=85.65 Aligned_cols=51 Identities=25% Similarity=0.445 Sum_probs=42.5
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV 72 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~ 72 (236)
...+++++++.+.+| +.|+||||||||||+++|++.+.+. .|.|.+...++
T Consensus 36 ~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i 88 (263)
T 2olj_A 36 SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINL 88 (263)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEES
T ss_pred CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEC
Confidence 345788899999888 8899999999999999999999877 67777765444
No 86
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.61 E-value=9.5e-09 Score=91.99 Aligned_cols=49 Identities=20% Similarity=0.373 Sum_probs=41.4
Q ss_pred HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcc
Q 048723 22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVD 73 (236)
Q Consensus 22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~ 73 (236)
+++++++.+.+| +.|+||||||||||+++|++.+.++ .|.|.+....+.
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~ 70 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVA 70 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEE
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECc
Confidence 678899999888 8899999999999999999999887 677766554443
No 87
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.60 E-value=3.7e-07 Score=81.45 Aligned_cols=30 Identities=37% Similarity=0.628 Sum_probs=26.3
Q ss_pred CCcceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723 30 WKRGYLLYGPPGTGKSTMIAAMANFLNYDL 59 (236)
Q Consensus 30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~~ 59 (236)
...+++|+||||||||+++++|+..++.++
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 345699999999999999999999987665
No 88
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.60 E-value=2.7e-07 Score=81.29 Aligned_cols=44 Identities=11% Similarity=0.180 Sum_probs=36.7
Q ss_pred eEEEEeecCc---cccchHHHhcCCccc-EEecccCCHHHHHHHHHHhhc
Q 048723 63 KGIVFTTNYV---DKLDPALIRRGRMDK-RIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 63 ~~vi~ttN~~---~~ld~al~r~gR~d~-~i~~~~p~~~~~~~i~~~~l~ 108 (236)
+.+|++||.+ +.+++++.+ |+.. .+.|+.++.+++..++..++.
T Consensus 168 ~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~ 215 (387)
T 2v1u_A 168 VSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAE 215 (387)
T ss_dssp CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHH
T ss_pred EEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHH
Confidence 4788889887 778999988 7765 889999999999999887754
No 89
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.59 E-value=3.1e-07 Score=90.67 Aligned_cols=75 Identities=24% Similarity=0.404 Sum_probs=60.1
Q ss_pred CcceEEECCCCCChHHHHHHHHhhc----------CCcc-----------------------------------------
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFL----------NYDL----------------------------------------- 59 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l----------~~~~----------------------------------------- 59 (236)
+++++|+||||||||+++++|+..+ +..+
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~ID 270 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFID 270 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEEC
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 4569999999999999999999986 3332
Q ss_pred --------------------------cCceEEEEeecCcc----ccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 60 --------------------------VGEKGIVFTTNYVD----KLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 60 --------------------------~~~~~vi~ttN~~~----~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
.+.+.+|++||..+ .+|++++| ||+. |.++.|+.+.+..|++.++.
T Consensus 271 Ei~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~ 346 (854)
T 1qvr_A 271 ELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKE 346 (854)
T ss_dssp CC-------------------HHHHHTTCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHH
T ss_pred cHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhh
Confidence 23567888888765 37899988 8975 89999999999989876543
No 90
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.59 E-value=1e-08 Score=87.70 Aligned_cols=57 Identities=28% Similarity=0.508 Sum_probs=46.2
Q ss_pred hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723 18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP 77 (236)
Q Consensus 18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~ 77 (236)
....++.++++.+++| +.|+||||||||||+++|++.+.+. .|.|.+....+...++
T Consensus 18 ~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~ 76 (257)
T 1g6h_A 18 GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEP 76 (257)
T ss_dssp TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCH
T ss_pred CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCH
Confidence 3345788999999999 8899999999999999999999877 6777776655555543
No 91
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.56 E-value=8.1e-09 Score=90.72 Aligned_cols=58 Identities=24% Similarity=0.379 Sum_probs=50.4
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
.++++++|.+++| +.|+||+|+|||||+++|++.+.+. .|-|.+.+.++..++..-+|
T Consensus 68 ~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r 127 (306)
T 3nh6_A 68 ETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLR 127 (306)
T ss_dssp EEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHH
T ss_pred ceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHh
Confidence 4677888888888 8899999999999999999999888 78888888888888876665
No 92
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.55 E-value=1.8e-08 Score=85.72 Aligned_cols=59 Identities=22% Similarity=0.340 Sum_probs=47.7
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
..++.++++.+++| +.|+||+|||||||+++|++.+.+. .|-|.+...++..+++..+|
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~~~~ 82 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLR 82 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHH
Confidence 45788899999888 8899999999999999999999887 67777776666666554333
No 93
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.53 E-value=1.7e-08 Score=87.44 Aligned_cols=60 Identities=22% Similarity=0.389 Sum_probs=46.6
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcc--ccchHHHh
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVD--KLDPALIR 81 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~--~ld~al~r 81 (236)
...++.++++.+.+| +.|+||||||||||+++|++.+.+. .|.|.+....+. ..++.-++
T Consensus 33 ~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 33 GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCHHHHH
T ss_pred CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCHHHHc
Confidence 345788899999888 8899999999999999999999877 677777665554 44443333
No 94
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.53 E-value=2.9e-08 Score=85.33 Aligned_cols=49 Identities=18% Similarity=0.375 Sum_probs=41.1
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV 72 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~ 72 (236)
.++.++++.+.+| +.|+||+|||||||+++|++.+.+. .|.|.+....+
T Consensus 21 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~ 71 (266)
T 2yz2_A 21 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERK 71 (266)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEC
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEEC
Confidence 4688899999888 7899999999999999999998877 67776655443
No 95
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.52 E-value=6.6e-08 Score=80.64 Aligned_cols=49 Identities=20% Similarity=0.413 Sum_probs=41.0
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV 72 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~ 72 (236)
.++.++++.+.+| +.|+||||+|||||+++|++.+.+. .|-|.+....+
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~ 73 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPI 73 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEG
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEh
Confidence 5788889988888 8899999999999999999998877 67776655433
No 96
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.51 E-value=4.6e-07 Score=88.08 Aligned_cols=43 Identities=21% Similarity=0.345 Sum_probs=34.7
Q ss_pred ceEEEEeecCcc-----ccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723 62 EKGIVFTTNYVD-----KLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL 107 (236)
Q Consensus 62 ~~~vi~ttN~~~-----~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l 107 (236)
...+|++||..+ .+|+++.| ||+ .+.++.|+.+++..+++.+.
T Consensus 315 ~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 315 KIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHH
T ss_pred CeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHH
Confidence 567888888653 46888988 896 79999999999998888654
No 97
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.50 E-value=4.3e-07 Score=78.27 Aligned_cols=72 Identities=19% Similarity=0.226 Sum_probs=58.2
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc-----c-------------------------------------------------
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD-----L------------------------------------------------- 59 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~-----~------------------------------------------------- 59 (236)
++|+||||+|||+++++++..+... +
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~ 124 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQ 124 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHH
Confidence 9999999999999999999874110 0
Q ss_pred ----------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 60 ----------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 60 ----------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
.....+|++||.+..+++++.+ |+ ..+.|+.|+.++...++..++.
T Consensus 125 ~~L~~~le~~~~~~~~il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~ 180 (323)
T 1sxj_B 125 QALRRTMELYSNSTRFAFACNQSNKIIEPLQS--QC-AILRYSKLSDEDVLKRLLQIIK 180 (323)
T ss_dssp HTTHHHHHHTTTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCceEEEEeCChhhchhHHHh--hc-eEEeecCCCHHHHHHHHHHHHH
Confidence 2357888899999999999988 55 4789999999988888877643
No 98
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.49 E-value=3.6e-08 Score=83.91 Aligned_cols=59 Identities=24% Similarity=0.334 Sum_probs=45.3
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhh--cCCcccCceEEEEeecCccccchHHH
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANF--LNYDLVGEKGIVFTTNYVDKLDPALI 80 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~--l~~~~~~~~~vi~ttN~~~~ld~al~ 80 (236)
...++.++++.+.+| +.|+||||+|||||+++|++. +.+. .|-|.+....+..+++..+
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~~~~ 77 (250)
T 2d2e_A 15 GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSPDER 77 (250)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCHHHH
T ss_pred CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCHHHH
Confidence 345788899999888 889999999999999999997 4444 5667776666666655433
No 99
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.49 E-value=2.3e-08 Score=90.66 Aligned_cols=58 Identities=28% Similarity=0.324 Sum_probs=48.9
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
...++++++.+.+| +.|+||+|||||||+++|++.+. + .|-|.+...++..+++.-+|
T Consensus 34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~~~r 93 (390)
T 3gd7_A 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLEQWR 93 (390)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHHHHH
T ss_pred eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChHHHh
Confidence 45788899999888 88999999999999999999986 6 67888888888888876544
No 100
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.49 E-value=2.1e-06 Score=75.82 Aligned_cols=45 Identities=18% Similarity=0.159 Sum_probs=35.3
Q ss_pred ceEEEEeecCc---cccchHHHhcCCccc-EEecccCCHHHHHHHHHHhhc
Q 048723 62 EKGIVFTTNYV---DKLDPALIRRGRMDK-RIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 62 ~~~vi~ttN~~---~~ld~al~r~gR~d~-~i~~~~p~~~~~~~i~~~~l~ 108 (236)
...+|+++|.+ +.+++.+.+ |+.. .+.|+.++.++...++..++.
T Consensus 159 ~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~ 207 (389)
T 1fnn_A 159 RIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAK 207 (389)
T ss_dssp CEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHH
T ss_pred CEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 66788888887 678888877 6654 789999998888888877654
No 101
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.47 E-value=5.6e-07 Score=79.04 Aligned_cols=73 Identities=5% Similarity=-0.046 Sum_probs=48.0
Q ss_pred ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccchhh--HHHHHHHHHcCCCCHHHHHHHHc
Q 048723 62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAF--FAEINSLLAETNMASADVAENLM 137 (236)
Q Consensus 62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~~~--~~~i~~ll~~~gls~a~i~~~l~ 137 (236)
...+|++||+++.+++++++ |+ ..+.|..|+.+++..++........... ...+..++...+-+..++.+.+.
T Consensus 164 ~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 164 NIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp TEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 56788899999999999988 66 7789999999998888887654222111 11233333433445555554444
No 102
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.46 E-value=1.5e-06 Score=76.36 Aligned_cols=45 Identities=20% Similarity=0.174 Sum_probs=34.8
Q ss_pred ceEEEEeecCc---cccchHHHhcCCcc-cEEecccCCHHHHHHHHHHhhc
Q 048723 62 EKGIVFTTNYV---DKLDPALIRRGRMD-KRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 62 ~~~vi~ttN~~---~~ld~al~r~gR~d-~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
.+.+|++||.+ ..+++.+.+ |+. ..+.++.++.++...++..++.
T Consensus 163 ~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~ 211 (386)
T 2qby_A 163 KISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQ 211 (386)
T ss_dssp -EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHH
T ss_pred eEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHH
Confidence 56788888877 467888887 564 5899999999999988887653
No 103
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.46 E-value=2e-07 Score=100.90 Aligned_cols=44 Identities=14% Similarity=0.119 Sum_probs=38.7
Q ss_pred ceEEEEeecCcc-----ccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 62 EKGIVFTTNYVD-----KLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 62 ~~~vi~ttN~~~-----~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
++.+|+++|++. .||++++| || ..|.++.|+.+.+..|+..++.
T Consensus 1384 ~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1384 RIHIVGACNPPTDPGRIPMSERFTR--HA-AILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp SEEEEEEECCTTSTTCCCCCHHHHT--TE-EEEECCCCTTTHHHHHHHHHHH
T ss_pred CEEEEEecCCCccCCCccCChhhhh--ee-eEEEeCCCCHHHHHHHHHHHHH
Confidence 468899999994 79999999 88 8899999999999999887764
No 104
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.44 E-value=7.3e-08 Score=82.86 Aligned_cols=59 Identities=24% Similarity=0.271 Sum_probs=45.0
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhc--CCcccCceEEEEeecCccccchHHH
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFL--NYDLVGEKGIVFTTNYVDKLDPALI 80 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l--~~~~~~~~~vi~ttN~~~~ld~al~ 80 (236)
...+++++++.+.+| +.|+||||+|||||+++|++.+ .+. .|-|.+...++..+++..+
T Consensus 32 ~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~i~~~~~~~~ 94 (267)
T 2zu0_C 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLALSPEDR 94 (267)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEEGGGSCHHHH
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCcCCHHHH
Confidence 345788899999888 8899999999999999999985 233 5666666666655655443
No 105
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.41 E-value=3.2e-07 Score=74.74 Aligned_cols=38 Identities=26% Similarity=0.175 Sum_probs=25.9
Q ss_pred HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcc
Q 048723 22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDL 59 (236)
Q Consensus 22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~ 59 (236)
.+.++++.+.++ ++|+|||||||||+++.|+..++..+
T Consensus 14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~ 53 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPF 53 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCE
Confidence 466777777666 88999999999999999999998876
No 106
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.40 E-value=3.3e-07 Score=86.88 Aligned_cols=59 Identities=24% Similarity=0.353 Sum_probs=49.2
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
..+++++++.+++| +.|+||+|||||||+++|++.+.+. .|.|.+.+.++..+++.-+|
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~ 416 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLR 416 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHh
Confidence 34788899988888 8899999999999999999999887 77777777777777765555
No 107
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.35 E-value=7.8e-07 Score=77.90 Aligned_cols=71 Identities=17% Similarity=0.144 Sum_probs=56.6
Q ss_pred cceEEECCCCCChHHHHHHHHhhc------CCcc----------------------------------------------
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFL------NYDL---------------------------------------------- 59 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l------~~~~---------------------------------------------- 59 (236)
+.++|+||||+|||++++++++.+ .+++
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~a 98 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQA 98 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHHH
Confidence 469999999999999999999853 1222
Q ss_pred -----------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723 60 -----------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL 107 (236)
Q Consensus 60 -----------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l 107 (236)
....++|++||+++.+.|+++. | .+.|..++.++....+...+
T Consensus 99 ~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 99 ANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 3367888888999999999988 6 68888888777777766654
No 108
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.35 E-value=1e-06 Score=73.10 Aligned_cols=29 Identities=28% Similarity=0.452 Sum_probs=25.0
Q ss_pred CCCCcceEEECCCCCChHHHHHHHHhhcC
Q 048723 28 KAWKRGYLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 28 ~~~~rg~lL~GPpGtGKTtlakaia~~l~ 56 (236)
++.+++++|+|||||||||++.+|++.+.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44456799999999999999999999874
No 109
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.34 E-value=7.6e-08 Score=81.53 Aligned_cols=54 Identities=20% Similarity=0.336 Sum_probs=43.4
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD 76 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld 76 (236)
..++.++++.+++| +.|+||+|||||||+++|++.+.+. .|.|.+...++..++
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~ 70 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNIS 70 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTS
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCC
Confidence 44788899999888 8899999999999999999999877 566666555544444
No 110
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.34 E-value=1.1e-07 Score=81.45 Aligned_cols=57 Identities=28% Similarity=0.342 Sum_probs=43.7
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
.++.++++.+++| +.|+||+|||||||+++|++.+. + .|.|.+...++..+++..+|
T Consensus 34 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~---~G~I~i~g~~i~~~~~~~~~ 92 (260)
T 2ghi_A 34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-A---EGDIKIGGKNVNKYNRNSIR 92 (260)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-C---EEEEEETTEEGGGBCHHHHH
T ss_pred ceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC-C---CeEEEECCEEhhhcCHHHHh
Confidence 3688889999888 88999999999999999999886 4 36666655555555544333
No 111
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.34 E-value=2.4e-06 Score=73.45 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=22.9
Q ss_pred CCcceEEECCCCCChHHHHHHHHhhc
Q 048723 30 WKRGYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 30 ~~rg~lL~GPpGtGKTtlakaia~~l 55 (236)
.+.+++|+||||||||+++++||+.+
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 34569999999999999999999864
No 112
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.34 E-value=7.5e-07 Score=87.96 Aligned_cols=33 Identities=15% Similarity=0.269 Sum_probs=27.5
Q ss_pred ccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 74 KLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 74 ~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
.+.|+++. |++.++.|..++.+.+..|+..++.
T Consensus 739 ~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~ 771 (854)
T 1qvr_A 739 HFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLS 771 (854)
T ss_dssp TSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred hCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHH
Confidence 46778877 9998898888999999999888763
No 113
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.32 E-value=6.1e-08 Score=83.30 Aligned_cols=48 Identities=25% Similarity=0.397 Sum_probs=39.2
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV 72 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~ 72 (236)
..++.++++.+. | +.|+||||||||||+++|++.+ +. .+.|.+....+
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~ 67 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEV 67 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEG
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEEC
Confidence 346888888888 8 8899999999999999999999 76 66666655433
No 114
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.32 E-value=1.5e-07 Score=81.04 Aligned_cols=58 Identities=21% Similarity=0.279 Sum_probs=46.7
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHH
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALI 80 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~ 80 (236)
..++.++++.+++| +.|+||+|||||||+++|++.+.+. .|.|.+...++..+++..+
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~ 91 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYL 91 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHH
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHHH
Confidence 34788889999888 8899999999999999999999877 6777776666655555433
No 115
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.30 E-value=1.6e-07 Score=89.23 Aligned_cols=57 Identities=23% Similarity=0.425 Sum_probs=48.7
Q ss_pred HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
+++++++.+++| +.|+||+|||||||+++|++.+.+. .|.|.+.+.++..+++.-+|
T Consensus 359 vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~~ 417 (595)
T 2yl4_A 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQLNPVWLR 417 (595)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCS---EEEEEETTEETTTBCHHHHH
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCEEhhhCCHHHHH
Confidence 677888888888 8899999999999999999999887 78888887777777766555
No 116
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.30 E-value=1.8e-07 Score=84.46 Aligned_cols=72 Identities=18% Similarity=0.207 Sum_probs=52.0
Q ss_pred hHHhhhC--CCCCcceEEECCCCCChHHHHHHHHhhcCCcc--------------------------------c------
Q 048723 21 EYCAKIG--KAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL--------------------------------V------ 60 (236)
Q Consensus 21 ~~~~~~~--~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~--------------------------------~------ 60 (236)
..+++++ ++.++.++|+|||||||||++++|++.++..+ .
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~~~~r~l~ 236 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLP 236 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTTTTTCC
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 4455554 44445589999999999999999998764322 0
Q ss_pred ----------------CceEEEEeecCccccchHHHhcCCcccEEeccc
Q 048723 61 ----------------GEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSY 93 (236)
Q Consensus 61 ----------------~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~ 93 (236)
|.+.+++++|+++.+ +++++++|++..++..+
T Consensus 237 ~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 237 SGQGINNLDNLRDYLDGSVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp CCSHHHHHHTTHHHHHCSSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred ccCcchHHHHHHHHhcCCCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 112567788888888 67889999887776644
No 117
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.29 E-value=3e-07 Score=73.03 Aligned_cols=41 Identities=20% Similarity=0.101 Sum_probs=34.3
Q ss_pred hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
+.....+..+++.+++| ++|+||+|+|||||+++|++.+ +.
T Consensus 17 ~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~ 59 (158)
T 1htw_A 17 FGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH 59 (158)
T ss_dssp HHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC
T ss_pred HHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC
Confidence 34445677888888888 8899999999999999999999 44
No 118
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.27 E-value=1.5e-07 Score=80.24 Aligned_cols=56 Identities=25% Similarity=0.384 Sum_probs=41.9
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHH
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALI 80 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~ 80 (236)
.++.++++.+.+| +.|+||||+|||||+++|++.+.+. |-|.+....+..+++.-+
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~----G~i~~~g~~~~~~~~~~~ 71 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK----GSIQFAGQPLEAWSATKL 71 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE----EEEEETTEEGGGSCHHHH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC----eEEEECCEECCcCCHHHH
Confidence 3678888888888 7899999999999999999998654 445555544444544333
No 119
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.25 E-value=6.1e-07 Score=75.97 Aligned_cols=49 Identities=20% Similarity=0.361 Sum_probs=37.7
Q ss_pred HhhhCCCCCcc-eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccc
Q 048723 23 CAKIGKAWKRG-YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDK 74 (236)
Q Consensus 23 ~~~~~~~~~rg-~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ 74 (236)
+.++++.+++. +.|+||||||||||+++|++.+.+. .|.|.+....+..
T Consensus 15 l~~isl~i~~e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~ 64 (240)
T 2onk_A 15 RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITP 64 (240)
T ss_dssp EEEEEEEECSSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTT
T ss_pred EeeeEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCc
Confidence 66666655444 7899999999999999999999877 6777766544443
No 120
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.23 E-value=5e-07 Score=72.12 Aligned_cols=45 Identities=18% Similarity=0.347 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcC
Q 048723 6 KEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 6 k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~ 56 (236)
.+.+.+.+..++ .++.+..+++++|+||||||||||+++|++.+.
T Consensus 19 ~~~~~~~~~~~~------~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 19 QNRALLTIRVFV------HNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHH------HSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH------HhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344445444443 333444456699999999999999999999885
No 121
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.22 E-value=3.6e-07 Score=86.58 Aligned_cols=58 Identities=26% Similarity=0.363 Sum_probs=48.7
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
.+++++++.+++| +.|+||+|||||||+++|++.+.+. .|.|.+.+.++..+++.-+|
T Consensus 357 ~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~ 416 (582)
T 3b60_A 357 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLR 416 (582)
T ss_dssp CSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHH
T ss_pred ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHH
Confidence 4677888888888 8899999999999999999999888 78888877777777765554
No 122
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.22 E-value=2.3e-07 Score=87.85 Aligned_cols=58 Identities=21% Similarity=0.351 Sum_probs=49.7
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
.+++++++.+++| +.|+||+|+|||||+++|++.+.+. .|-|.+.+.++..+++.-+|
T Consensus 355 ~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r 414 (578)
T 4a82_A 355 PILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLR 414 (578)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHH
T ss_pred cceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHh
Confidence 3677888888888 8899999999999999999999988 78888888888888776655
No 123
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.21 E-value=2.3e-07 Score=88.29 Aligned_cols=58 Identities=26% Similarity=0.411 Sum_probs=49.8
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
..++++++.+++| +.|+||+|+|||||+++|++.+.+. .|-|.+.+.++..+++.-+|
T Consensus 369 ~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r 428 (598)
T 3qf4_B 369 PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLR 428 (598)
T ss_dssp CSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHH
T ss_pred ccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHH
Confidence 3677788888888 8899999999999999999999888 78888888888888876665
No 124
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.18 E-value=3.2e-07 Score=87.14 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=50.0
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
.+++++++.+++| +.|+||+|||||||+++|++.+.+. .|.|.+.+.++..++..-+|
T Consensus 357 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r 416 (587)
T 3qf4_A 357 PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLR 416 (587)
T ss_dssp CSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHH
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHH
Confidence 3677788888888 8899999999999999999999988 88888888888888876655
No 125
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.17 E-value=1.9e-06 Score=75.29 Aligned_cols=65 Identities=15% Similarity=0.302 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcc
Q 048723 6 KEEIKKDLKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVD 73 (236)
Q Consensus 6 k~~i~~~v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~ 73 (236)
++.+.+.+...+........+++...+| ++|+||+|+||||+++.||+.+.+. .+-+.+.+.+..
T Consensus 73 ~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~ 139 (302)
T 3b9q_A 73 KDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTF 139 (302)
T ss_dssp HHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCS
T ss_pred HHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeeccc
Confidence 3344444444443322123456666666 8899999999999999999998755 344444444433
No 126
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.16 E-value=1.5e-06 Score=67.17 Aligned_cols=26 Identities=15% Similarity=0.082 Sum_probs=23.0
Q ss_pred CcceEEECCCCCChHHHHHHHHhhcC
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l~ 56 (236)
..+++|+||||||||+++++|+....
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCC
Confidence 35599999999999999999998765
No 127
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.15 E-value=4.6e-06 Score=70.50 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=23.2
Q ss_pred CcceEEECCCCCChHHHHHHHHhhcC
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l~ 56 (236)
..+++|+||||||||+++++|+..+.
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 35699999999999999999998764
No 128
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.13 E-value=5.7e-07 Score=75.44 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=37.6
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEE
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVF 67 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ 67 (236)
..++.++++.+++| +.|+||+|||||||+++|++.+.+. .|.|.+
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~ 67 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKH 67 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEE
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEE
Confidence 34788889999888 8899999999999999999999876 444443
No 129
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.10 E-value=5.1e-07 Score=76.21 Aligned_cols=39 Identities=21% Similarity=0.245 Sum_probs=34.7
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
..++.++++.+.+| +.|+||+|||||||+++|++.+.+.
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 58 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV 58 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 35788899999888 8899999999999999999998766
No 130
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.09 E-value=1.6e-06 Score=71.96 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=22.8
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhc
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l 55 (236)
..+++++|.+++| +.|+||+|+|||||++.|++.+
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4578889999888 8899999999999999999987
No 131
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.06 E-value=7.5e-07 Score=75.93 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=37.7
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEE
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIV 66 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi 66 (236)
...++.++++.+.+| +.|+||||+|||||+++|++.+.+. .|-|.
T Consensus 17 ~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~ 63 (253)
T 2nq2_C 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIE 63 (253)
T ss_dssp TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEE
T ss_pred CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEE
Confidence 345788899999888 8899999999999999999998876 45443
No 132
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.05 E-value=1.1e-05 Score=70.32 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.4
Q ss_pred CcceEEECCCCCChHHHHHHHHhhc
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l 55 (236)
..+++|+||||||||+++++|+...
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEECCCCchHHHHHHHHHHhC
Confidence 4559999999999999999999865
No 133
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.04 E-value=5.4e-06 Score=74.22 Aligned_cols=34 Identities=21% Similarity=0.458 Sum_probs=28.7
Q ss_pred hhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 25 KIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 25 ~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
.+++...+| ++|+||+|+||||+++.||+.+.+.
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 184 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE 184 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc
Confidence 456666666 8899999999999999999998755
No 134
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.03 E-value=1.4e-06 Score=74.20 Aligned_cols=42 Identities=33% Similarity=0.423 Sum_probs=35.4
Q ss_pred hChhHHhhhCCCCCc---c--eEEECCCCCChHHHHHHHHhhcCCcc
Q 048723 18 EGKEYCAKIGKAWKR---G--YLLYGPPGTGKSTMIAAMANFLNYDL 59 (236)
Q Consensus 18 ~~~~~~~~~~~~~~r---g--~lL~GPpGtGKTtlakaia~~l~~~~ 59 (236)
....+++++++.+.+ | ++|+|||||||||+++.|+..+++.+
T Consensus 30 ~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~ 76 (250)
T 3nwj_A 30 EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTF 76 (250)
T ss_dssp --CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEE
T ss_pred CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcE
Confidence 445688999988877 6 89999999999999999999998763
No 135
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.00 E-value=2.9e-06 Score=71.27 Aligned_cols=39 Identities=18% Similarity=0.073 Sum_probs=24.6
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
...++.+++|.+++| +.|.||+||||||+++.|++.++.
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 345788999999888 778999999999999999998764
No 136
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.94 E-value=9e-06 Score=75.66 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=29.7
Q ss_pred hhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 24 AKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 24 ~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
.++++.+.+| ++|+||+||||||+++.|++.+...
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~ 320 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ 320 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc
Confidence 4566777777 7899999999999999999998655
No 137
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.93 E-value=5.6e-06 Score=65.16 Aligned_cols=27 Identities=44% Similarity=0.662 Sum_probs=24.0
Q ss_pred cceEEECCCCCChHHHHHHHHhhcCCc
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
..++|+|||||||||+++.|+..+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~ 31 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNME 31 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 348999999999999999999998754
No 138
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.93 E-value=1.4e-06 Score=75.86 Aligned_cols=39 Identities=21% Similarity=0.333 Sum_probs=34.4
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
..++.++++.+.+| +.|+||+|||||||+++|++.+.+.
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~ 91 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS 91 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 34688888888888 8899999999999999999998766
No 139
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.91 E-value=4.2e-06 Score=73.37 Aligned_cols=36 Identities=28% Similarity=0.392 Sum_probs=32.3
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhc
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l 55 (236)
..+++++++.+++| +.|+||||||||||+++|++.+
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34688888888888 8899999999999999999998
No 140
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.90 E-value=2.4e-05 Score=69.15 Aligned_cols=38 Identities=29% Similarity=0.439 Sum_probs=28.8
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDK 74 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ 74 (236)
++|+||||+||||+++.|++.+.+. .+-+.+.+.+...
T Consensus 132 i~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r 169 (328)
T 3e70_C 132 IMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFR 169 (328)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccc
Confidence 8899999999999999999998765 3444444444443
No 141
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.89 E-value=1.6e-06 Score=89.32 Aligned_cols=61 Identities=26% Similarity=0.424 Sum_probs=54.1
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCc
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRM 85 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~ 85 (236)
.+++++++.+++| +.|+||+|||||||+++|.+...+. .|.|.+.+.++..++..-+|. ++
T Consensus 1093 ~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~~lR~-~i 1155 (1321)
T 4f4c_A 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPEHTRS-QI 1155 (1321)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHHHHHT-TE
T ss_pred ccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHHHHHh-he
Confidence 3688888888888 8999999999999999999999988 888999999999999887773 44
No 142
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.89 E-value=2.4e-06 Score=87.88 Aligned_cols=58 Identities=19% Similarity=0.269 Sum_probs=51.2
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
.+++++++.+++| +.|+||+|||||||+++|++...+. .|-|.+.+.++..+++.-+|
T Consensus 404 ~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~~~r 463 (1284)
T 3g5u_A 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVRYLR 463 (1284)
T ss_dssp CSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHHHHH
T ss_pred cceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEHHhCCHHHHH
Confidence 3678888888888 8899999999999999999999988 88888888888888887766
No 143
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.88 E-value=3.1e-06 Score=87.21 Aligned_cols=58 Identities=21% Similarity=0.305 Sum_probs=52.1
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r 81 (236)
.+++++++.+++| +.|+||+|||||||++.|.++..+. .|.|.+.+.++..++..-+|
T Consensus 432 ~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr 491 (1321)
T 4f4c_A 432 PILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEFLR 491 (1321)
T ss_dssp CSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHH
T ss_pred ceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccc---cCcccCCCccchhccHHHHh
Confidence 4678888888888 8899999999999999999999988 89999999899999987776
No 144
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.87 E-value=0.0002 Score=77.99 Aligned_cols=73 Identities=21% Similarity=0.257 Sum_probs=58.9
Q ss_pred CCcceEEECCCCCChHHHHHHHHhhcCCcc--------------------------------------------------
Q 048723 30 WKRGYLLYGPPGTGKSTMIAAMANFLNYDL-------------------------------------------------- 59 (236)
Q Consensus 30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~~-------------------------------------------------- 59 (236)
...|.++.||+|||||+++++||+.++..+
T Consensus 644 ~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~evLs~l~~~l~~ 723 (2695)
T 4akg_A 644 QKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDEKVLSAVSANIQQ 723 (2695)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHHHHHHHHHHHH
T ss_pred hCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcChHHHHHHHHHHHH
Confidence 356789999999999999999999999987
Q ss_pred ---------------------cCceEEEEeec----CccccchHHHhcCCcccEEecccCCHHHHHHHHHH
Q 048723 60 ---------------------VGEKGIVFTTN----YVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKS 105 (236)
Q Consensus 60 ---------------------~~~~~vi~ttN----~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~ 105 (236)
.....+++|.| .-..||+++.+ || +.+.+.+|+.+....+.-.
T Consensus 724 i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i~ei~l~ 791 (2695)
T 4akg_A 724 IQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGTIAEMILQ 791 (2695)
T ss_dssp HHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHHHHHHHHH
T ss_pred HHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHHHHHHHHH
Confidence 11345677888 44579999988 77 7899999999887777543
No 145
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.87 E-value=8.8e-06 Score=65.80 Aligned_cols=27 Identities=41% Similarity=0.578 Sum_probs=24.3
Q ss_pred cceEEECCCCCChHHHHHHHHhhcCCc
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
++++|+||||||||+++++|++.+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 679999999999999999999988544
No 146
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.87 E-value=1.3e-05 Score=61.83 Aligned_cols=28 Identities=32% Similarity=0.470 Sum_probs=24.1
Q ss_pred CcceEEECCCCCChHHHHHHHHhhcCCc
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
...++|+||||||||+++++|+......
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~~~ 51 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGRNA 51 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSSTTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCCcc
Confidence 3459999999999999999999987543
No 147
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.86 E-value=7.6e-06 Score=65.68 Aligned_cols=33 Identities=30% Similarity=0.474 Sum_probs=25.0
Q ss_pred hCCCCCcc--eEEECCCCCChHHHHHHHHhh-cCCc
Q 048723 26 IGKAWKRG--YLLYGPPGTGKSTMIAAMANF-LNYD 58 (236)
Q Consensus 26 ~~~~~~rg--~lL~GPpGtGKTtlakaia~~-l~~~ 58 (236)
+++.++++ ++|+|||||||||+++.|+.. ++.+
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~ 38 (184)
T 1y63_A 3 GSMEQPKGINILITGTPGTGKTSMAEMIAAELDGFQ 38 (184)
T ss_dssp ---CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEE
T ss_pred cCcCCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence 34555454 899999999999999999998 5544
No 148
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.86 E-value=1.8e-05 Score=72.57 Aligned_cols=48 Identities=23% Similarity=0.316 Sum_probs=40.3
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN 70 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN 70 (236)
....++++ +++.+| ++|+||+|||||||+++|++...++ .+.+.+.+.
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~ 193 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGE 193 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESC
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEece
Confidence 34578899 999999 8899999999999999999999877 565555554
No 149
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.84 E-value=9.2e-06 Score=64.67 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=25.1
Q ss_pred CcceEEECCCCCChHHHHHHHHhhcCCc
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
.+.++|+|||||||||+++.|+..++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~ 32 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRI 32 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3458999999999999999999999877
No 150
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.84 E-value=9.2e-06 Score=65.57 Aligned_cols=23 Identities=26% Similarity=0.726 Sum_probs=21.3
Q ss_pred eEEECCCCCChHHHHHHHHhhcC
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~ 56 (236)
+.|+|||||||||+++.|++.+.
T Consensus 10 i~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 10 FIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999863
No 151
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.83 E-value=9.6e-06 Score=64.07 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=23.5
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
-++|+|||||||||+++.|+..++..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~~~ 30 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLPEP 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 48899999999999999999998754
No 152
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.83 E-value=1e-05 Score=64.67 Aligned_cols=23 Identities=52% Similarity=0.726 Sum_probs=21.0
Q ss_pred ceEEECCCCCChHHHHHHHHhhc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l 55 (236)
-++|+|||||||||+++.|++.+
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 38899999999999999999973
No 153
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.83 E-value=1.1e-05 Score=71.47 Aligned_cols=50 Identities=22% Similarity=0.263 Sum_probs=37.7
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV 72 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~ 72 (236)
..++.++++...+| +.|+||||+|||||+++|++.+.+. .+-+.+.++++
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~ 93 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDP 93 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECG
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcC
Confidence 45678888888777 7899999999999999999987654 33333344444
No 154
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.82 E-value=5.7e-06 Score=65.83 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=21.5
Q ss_pred hCCCCCcc--eEEECCCCCChHHHHHHH
Q 048723 26 IGKAWKRG--YLLYGPPGTGKSTMIAAM 51 (236)
Q Consensus 26 ~~~~~~rg--~lL~GPpGtGKTtlakai 51 (236)
+++.+++| ++|+||||||||||++++
T Consensus 2 vsl~i~~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 2 MKLTIPELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEESSEEEEEECCTTSCHHHHHHHH
T ss_pred ccccCCCCEEEEEECCCCCCHHHHHHHH
Confidence 45566667 889999999999999964
No 155
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.81 E-value=1e-05 Score=63.23 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=23.7
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCcc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYDL 59 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~~ 59 (236)
++|.|||||||||+++.|+..+++.+
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~l~~~~ 29 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKELKYPI 29 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHCCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCee
Confidence 78999999999999999999988763
No 156
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.80 E-value=1.2e-05 Score=64.15 Aligned_cols=28 Identities=32% Similarity=0.401 Sum_probs=24.3
Q ss_pred CcceEEECCCCCChHHHHHHHHhhcCCc
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
+.-++|+|||||||||+++.|+..++..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 32 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLP 32 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 3448899999999999999999988655
No 157
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.79 E-value=1.1e-05 Score=65.49 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=21.5
Q ss_pred eEEECCCCCChHHHHHHHHhhcC
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~ 56 (236)
++|+|||||||||+++.|++.++
T Consensus 32 i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 32 VVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhhC
Confidence 88999999999999999999874
No 158
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.78 E-value=7.9e-06 Score=72.98 Aligned_cols=44 Identities=23% Similarity=0.449 Sum_probs=35.6
Q ss_pred HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEe
Q 048723 22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFT 68 (236)
Q Consensus 22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~t 68 (236)
++..+++.+++| ++|+||+|||||||+++|++.+.+. .+.+.+.
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie 209 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIE 209 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEE
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEEC
Confidence 346667766666 8899999999999999999999876 5666554
No 159
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.77 E-value=1.1e-05 Score=68.90 Aligned_cols=37 Identities=32% Similarity=0.486 Sum_probs=29.3
Q ss_pred hHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCC
Q 048723 21 EYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 21 ~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
.++.++++....-++|+||+||||||++++|++.+.+
T Consensus 15 ~vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 15 DKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp THHHHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 4677777333333889999999999999999998864
No 160
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.77 E-value=7.4e-06 Score=66.53 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=21.9
Q ss_pred eEEECCCCCChHHHHHHHHhhcC
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~ 56 (236)
+.|+|||||||||++++|++.+.
T Consensus 28 i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 28 IWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999986
No 161
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.76 E-value=1.3e-05 Score=63.49 Aligned_cols=26 Identities=35% Similarity=0.442 Sum_probs=23.8
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
.++|+|||||||||+++.|+..++.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~ 31 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLV 31 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 38899999999999999999998766
No 162
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.75 E-value=2.5e-05 Score=69.53 Aligned_cols=47 Identities=19% Similarity=0.225 Sum_probs=38.9
Q ss_pred ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEee
Q 048723 19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTT 69 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~tt 69 (236)
....++.+ +++.+| +.|+||||+|||||+++|++...++ .+.+.+.+
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G 106 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIG 106 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEES
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEec
Confidence 44678888 999999 8899999999999999999999877 45454444
No 163
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.74 E-value=1.7e-05 Score=63.66 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=23.0
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
-+.|+||||+||||++++|++.+...
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~~~ 28 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCcc
Confidence 37899999999999999999988543
No 164
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.73 E-value=1.5e-05 Score=64.24 Aligned_cols=25 Identities=28% Similarity=0.594 Sum_probs=22.6
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
++|+||||||||||++.|++.++..
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 7899999999999999999998643
No 165
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.73 E-value=8.8e-06 Score=67.52 Aligned_cols=34 Identities=21% Similarity=0.199 Sum_probs=19.2
Q ss_pred HHhhhCCCCCcc--eEEECCCCCChHHHHHHHH-hhc
Q 048723 22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMA-NFL 55 (236)
Q Consensus 22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia-~~l 55 (236)
....+++.+.+| +.|+||+||||||+++.|+ +.+
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 445677888777 7899999999999999999 876
No 166
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.72 E-value=2e-05 Score=62.23 Aligned_cols=24 Identities=38% Similarity=0.650 Sum_probs=21.8
Q ss_pred eEEECCCCCChHHHHHHHHhhcCC
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
++|+|||||||||+++.|++.++.
T Consensus 11 i~l~G~~GsGKSTl~~~l~~~~g~ 34 (175)
T 1knq_A 11 YVLMGVSGSGKSAVASEVAHQLHA 34 (175)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHTC
T ss_pred EEEEcCCCCCHHHHHHHHHHhhCc
Confidence 889999999999999999998743
No 167
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.72 E-value=1.8e-05 Score=64.58 Aligned_cols=28 Identities=29% Similarity=0.473 Sum_probs=22.9
Q ss_pred CCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723 29 AWKRG--YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 29 ~~~rg--~lL~GPpGtGKTtlakaia~~l~ 56 (236)
.+.+| +.|+||||||||||+++|++.+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 44555 88999999999999999999984
No 168
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.70 E-value=2.3e-05 Score=62.19 Aligned_cols=29 Identities=31% Similarity=0.426 Sum_probs=25.3
Q ss_pred CcceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFLNYDL 59 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l~~~~ 59 (236)
.+.++|+|||||||||+++.|+..++..+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~ 39 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKY 39 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeE
Confidence 34589999999999999999999887664
No 169
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.70 E-value=5.9e-05 Score=66.44 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=22.3
Q ss_pred eEEECCCCCChHHHHHHHHhhcCC
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
+.|.||+||||||++++|+..+..
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhcc
Confidence 778999999999999999999874
No 170
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.70 E-value=4.1e-05 Score=62.49 Aligned_cols=24 Identities=42% Similarity=0.600 Sum_probs=22.3
Q ss_pred eEEECCCCCChHHHHHHHHhhcCC
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
+.|+||||||||||+++|++.+..
T Consensus 25 v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 25 VALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp EEEECCTTSCTHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhh
Confidence 889999999999999999999863
No 171
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.69 E-value=5.3e-05 Score=65.45 Aligned_cols=24 Identities=33% Similarity=0.625 Sum_probs=21.5
Q ss_pred ceEEECCCCCChHHHHHHHHhhcC
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~ 56 (236)
-++|+|||||||||+++.|+..++
T Consensus 35 livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999998763
No 172
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.69 E-value=1.3e-05 Score=70.79 Aligned_cols=45 Identities=24% Similarity=0.414 Sum_probs=35.7
Q ss_pred HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEee
Q 048723 22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTT 69 (236)
Q Consensus 22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~tt 69 (236)
++..+++.+..| ++|+||+|||||||+++|++.+.+. .+.+.+..
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~ 206 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIED 206 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEES
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECC
Confidence 566666666555 8999999999999999999999876 56655543
No 173
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.68 E-value=6.7e-05 Score=65.32 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=23.3
Q ss_pred Ccc--eEEECCCCCChHHHHHHHHhhcC
Q 048723 31 KRG--YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 31 ~rg--~lL~GPpGtGKTtlakaia~~l~ 56 (236)
.+| +.|+||+||||||++++|++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 445 78999999999999999999887
No 174
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.67 E-value=2.6e-05 Score=64.92 Aligned_cols=40 Identities=28% Similarity=0.396 Sum_probs=28.9
Q ss_pred CCcceEEECCCCCChHHHHHHHHhhcCC-cccCceEEEEeecC
Q 048723 30 WKRGYLLYGPPGTGKSTMIAAMANFLNY-DLVGEKGIVFTTNY 71 (236)
Q Consensus 30 ~~rg~lL~GPpGtGKTtlakaia~~l~~-~~~~~~~vi~ttN~ 71 (236)
...-++|+||||+|||||+++|++.+.+ .+ .+.+.++|..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~--~g~v~~ttr~ 55 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDT--QVSVSHTTRQ 55 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTE--EECCCEECSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCce--EEEEEecCCC
Confidence 3334889999999999999999999864 23 2334445543
No 175
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.67 E-value=2.2e-05 Score=65.06 Aligned_cols=26 Identities=35% Similarity=0.331 Sum_probs=21.2
Q ss_pred CCCCcceEEECCCCCChHHHHHHHHh
Q 048723 28 KAWKRGYLLYGPPGTGKSTMIAAMAN 53 (236)
Q Consensus 28 ~~~~rg~lL~GPpGtGKTtlakaia~ 53 (236)
+....-++|+||||||||||+++|+.
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 33333389999999999999999993
No 176
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.66 E-value=2.6e-05 Score=62.00 Aligned_cols=26 Identities=38% Similarity=0.511 Sum_probs=24.0
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
.++|+|+|||||||+++.|+..++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~ 29 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVG 29 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 38899999999999999999998876
No 177
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.65 E-value=1.8e-05 Score=62.92 Aligned_cols=34 Identities=26% Similarity=0.372 Sum_probs=27.8
Q ss_pred hhhCCCCCcc-eEEECCCCCChHHHHHHHHhhcCC
Q 048723 24 AKIGKAWKRG-YLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 24 ~~~~~~~~rg-~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
.++.+.+.+| .+|+||+||||||++++|...+..
T Consensus 18 ~~~~~~~~~g~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 18 KKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SCEEEECCSSEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred ccEEEecCCCcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4555666666 678999999999999999988754
No 178
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.65 E-value=3.2e-05 Score=67.50 Aligned_cols=26 Identities=50% Similarity=0.788 Sum_probs=23.9
Q ss_pred CcceEEECCCCCChHHHHHHHHhhcC
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l~ 56 (236)
.++++|+||||||||+|+.+|++.+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 56799999999999999999999876
No 179
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.65 E-value=2.1e-05 Score=67.57 Aligned_cols=38 Identities=18% Similarity=0.123 Sum_probs=32.0
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
..+.++.+.+++| ++|+||||+|||||++.|+..+.+.
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 4577777777777 8899999999999999999987544
No 180
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.65 E-value=2.5e-05 Score=60.70 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.2
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
++|+|||||||||+++.| ..++..
T Consensus 4 I~l~G~~GsGKsT~a~~L-~~~g~~ 27 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL-KERGAK 27 (179)
T ss_dssp EEEECCTTSCHHHHHHHH-HHTTCE
T ss_pred EEEECCCCCCHHHHHHHH-HHCCCc
Confidence 789999999999999999 766655
No 181
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.65 E-value=3.8e-05 Score=62.75 Aligned_cols=28 Identities=18% Similarity=0.370 Sum_probs=23.5
Q ss_pred CCcc--eEEECCCCCChHHHHHHHHhhcCC
Q 048723 30 WKRG--YLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 30 ~~rg--~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
+++| ++|+||||||||||+++|++.+..
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3444 899999999999999999996544
No 182
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.64 E-value=2.5e-05 Score=62.09 Aligned_cols=25 Identities=36% Similarity=0.748 Sum_probs=22.8
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
++|+|||||||||+++.|+..++..
T Consensus 7 I~l~G~~GsGKST~~~~La~~l~~~ 31 (186)
T 3cm0_A 7 VIFLGPPGAGKGTQASRLAQELGFK 31 (186)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCe
Confidence 8899999999999999999987655
No 183
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.64 E-value=1.9e-05 Score=61.64 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=24.6
Q ss_pred CCcceEEECCCCCChHHHHHHHHhhcCCc
Q 048723 30 WKRGYLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
....++|+||||+|||||+++|++.+...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~ 63 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA 63 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 34459999999999999999999988543
No 184
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.64 E-value=2.8e-05 Score=62.68 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=22.2
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCC
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
-++|+|||||||||+++.|++.+.+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCC
Confidence 3889999999999999999998733
No 185
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.63 E-value=2.7e-05 Score=63.02 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=23.5
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
-++|+|||||||||+++.|+..++..
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~lg~~ 45 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEACGYP 45 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCE
Confidence 48999999999999999999988655
No 186
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.63 E-value=2.8e-05 Score=63.32 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=22.6
Q ss_pred CcceEEECCCCCChHHHHHHHHhhcC
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l~ 56 (236)
++-+.|+||||+|||||++.|++.+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 34489999999999999999999874
No 187
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.63 E-value=1.7e-05 Score=74.07 Aligned_cols=50 Identities=26% Similarity=0.365 Sum_probs=38.8
Q ss_pred ChhHHhhhCC-CCCcc--eEEECCCCCChHHHHHH--HHhhcCCcccCceEEEEeecC
Q 048723 19 GKEYCAKIGK-AWKRG--YLLYGPPGTGKSTMIAA--MANFLNYDLVGEKGIVFTTNY 71 (236)
Q Consensus 19 ~~~~~~~~~~-~~~rg--~lL~GPpGtGKTtlaka--ia~~l~~~~~~~~~vi~ttN~ 71 (236)
....++++++ .+++| ++|+||||||||||+++ +++...+. .+.++++...
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~---~g~i~v~g~~ 78 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD---EPGVFVTFEE 78 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSS
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEeC
Confidence 3457888998 88888 88999999999999999 66776544 5566666544
No 188
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.62 E-value=2.5e-05 Score=80.35 Aligned_cols=61 Identities=20% Similarity=0.371 Sum_probs=52.5
Q ss_pred HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcc
Q 048723 22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMD 86 (236)
Q Consensus 22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d 86 (236)
+++++++.+++| +.|+||+|||||||+++|++...+. .|-|.+.+.++..+++.-+|. ++.
T Consensus 1048 ~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~~~~r~-~i~ 1110 (1284)
T 3g5u_A 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNVQWLRA-QLG 1110 (1284)
T ss_dssp SBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCHHHHTT-SCE
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCHHHHHh-ceE
Confidence 688889988888 8899999999999999999999888 888888888888888776663 443
No 189
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.61 E-value=3.3e-05 Score=60.61 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=23.8
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
++|.|+|||||||+++.|+..++.+
T Consensus 10 i~l~G~~GsGKSTva~~La~~lg~~ 34 (168)
T 1zuh_A 10 LVLIGFMGSGKSSLAQELGLALKLE 34 (168)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC
Confidence 8899999999999999999999877
No 190
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.60 E-value=4e-05 Score=61.25 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=22.3
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCC
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
-++|+||||+|||||++.|++.+..
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~~ 31 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHPD 31 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCc
Confidence 3889999999999999999998753
No 191
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.60 E-value=5.7e-05 Score=68.87 Aligned_cols=36 Identities=33% Similarity=0.429 Sum_probs=28.6
Q ss_pred HHhhhCCCCCcc-eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 22 YCAKIGKAWKRG-YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 22 ~~~~~~~~~~rg-~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
.+.++ +..+.+ ++|+||+||||||++++|++.++..
T Consensus 158 ~L~~l-~~~~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 158 NFRRL-IKRPHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp HHHHH-HTSSSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred HHHHH-HHhcCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 45555 333444 7899999999999999999999876
No 192
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.60 E-value=3.9e-05 Score=62.56 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=22.9
Q ss_pred CCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723 30 WKRG--YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 30 ~~rg--~lL~GPpGtGKTtlakaia~~l~ 56 (236)
+++| ++|+||||+|||||++.|+..+.
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4444 88999999999999999997764
No 193
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.60 E-value=3.1e-05 Score=63.52 Aligned_cols=27 Identities=41% Similarity=0.635 Sum_probs=24.2
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNYDL 59 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~~~ 59 (236)
-+.|+|||||||||+++.|++.++.++
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~ 33 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHL 33 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 488999999999999999999887663
No 194
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.60 E-value=6.2e-05 Score=63.49 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=22.5
Q ss_pred cceEEECCCCCChHHHHHHHHhhcC
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~ 56 (236)
..++|+|||||||||+++.|+..++
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3488999999999999999999876
No 195
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.59 E-value=7.4e-05 Score=65.35 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 5 KKEEIKKDLKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 5 ~k~~i~~~v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
.++.+.+.+...+.... .+++...++ ++|+||||+||||++..||..+...
T Consensus 79 ~~~~~~~~l~~~l~~~~---~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 79 ALESLKEIILEILNFDT---KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp HHHHHHHHHHHHTCSCC---CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCC---CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 34444555554443321 233333333 8899999999999999999998644
No 196
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.59 E-value=3.4e-05 Score=60.46 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=23.6
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
-++|+|+|||||||+++.|+..++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~ 29 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYE 29 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 38899999999999999999988765
No 197
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.58 E-value=3.5e-05 Score=65.24 Aligned_cols=25 Identities=32% Similarity=0.590 Sum_probs=23.0
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
++|+|||||||||+++.||..++..
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~~~ 28 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETGWP 28 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhcCCCe
Confidence 7899999999999999999988765
No 198
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.58 E-value=2.9e-05 Score=61.05 Aligned_cols=21 Identities=38% Similarity=0.455 Sum_probs=19.7
Q ss_pred ceEEECCCCCChHHHHHHHHh
Q 048723 33 GYLLYGPPGTGKSTMIAAMAN 53 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~ 53 (236)
-++|+|||||||||+++.|+.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 478999999999999999998
No 199
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.57 E-value=0.00015 Score=59.73 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=28.0
Q ss_pred CcceEEECCCCCChHHHHHHHHhhcCCcc----cCceEEEEeecC
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFLNYDL----VGEKGIVFTTNY 71 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l~~~~----~~~~~vi~ttN~ 71 (236)
..-++|+||||+|||||++.|+...-.+. .+.+.+++.+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 33389999999999999999999532210 124555555543
No 200
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.56 E-value=2.6e-05 Score=64.42 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=23.5
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCcccCce
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYDLVGEK 63 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~~~~~~ 63 (236)
+.|+||+|||||||+++|++. .+. .|.+
T Consensus 25 ~~liG~nGsGKSTLl~~l~Gl-~p~-~G~I 52 (208)
T 3b85_A 25 VFGLGPAGSGKTYLAMAKAVQ-ALQ-SKQV 52 (208)
T ss_dssp EEEECCTTSSTTHHHHHHHHH-HHH-TTSC
T ss_pred EEEECCCCCCHHHHHHHHhcC-CCc-CCee
Confidence 889999999999999999998 544 3444
No 201
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.56 E-value=4.1e-05 Score=60.78 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=23.7
Q ss_pred cceEEECCCCCChHHHHHHHHhhcCCc
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
.-++|+|||||||||+++.|+..++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~ 33 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWV 33 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 348899999999999999999987654
No 202
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.56 E-value=5e-05 Score=62.11 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=22.2
Q ss_pred eEEECCCCCChHHHHHHHHhhcCC
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
++|+||||+||||+++.|+..+..
T Consensus 11 i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 11 IVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp EEEECCTTSCHHHHHHHHHHSTTC
T ss_pred EEEECcCCCCHHHHHHHHHhhCCC
Confidence 889999999999999999998764
No 203
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.56 E-value=3e-05 Score=61.58 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=22.1
Q ss_pred ceEEECCCCCChHHHHHHHHhhcC
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~ 56 (236)
-++|.|||||||||+++.|+..++
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 388999999999999999999876
No 204
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.54 E-value=4.2e-05 Score=60.79 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=23.2
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
-++|+|+|||||||+++.|+..++..
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~~~~ 30 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKYGYT 30 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 38899999999999999999988654
No 205
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.54 E-value=5.1e-05 Score=61.74 Aligned_cols=39 Identities=28% Similarity=0.347 Sum_probs=28.2
Q ss_pred cceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV 72 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~ 72 (236)
|.++|+||+|+|||||++.|.....-.+ ...+-.||..+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~--~~svs~TTR~p 40 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF--GFSVSSTTRTP 40 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE--EECCCEECSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe--EEEEEEeccCC
Confidence 4589999999999999999988764332 23344666543
No 206
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.54 E-value=4.5e-05 Score=60.98 Aligned_cols=21 Identities=43% Similarity=0.741 Sum_probs=19.5
Q ss_pred eEEECCCCCChHHHHHHHHhh
Q 048723 34 YLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~ 54 (236)
++|+|||||||||+++.|++.
T Consensus 5 i~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhcc
Confidence 789999999999999999974
No 207
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.54 E-value=4.6e-05 Score=61.60 Aligned_cols=25 Identities=44% Similarity=0.697 Sum_probs=23.1
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
++|+|||||||||+++.|+..++..
T Consensus 23 I~l~G~~GsGKST~a~~La~~l~~~ 47 (201)
T 2cdn_A 23 VLLLGPPGAGKGTQAVKLAEKLGIP 47 (201)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 8899999999999999999988765
No 208
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.54 E-value=4.6e-05 Score=63.79 Aligned_cols=27 Identities=30% Similarity=0.585 Sum_probs=23.1
Q ss_pred cceEEECCCCCChHHHHHHHHhhcCCc
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
.-++|+|||||||||+++.|+..++..
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 348899999999999999999766554
No 209
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.53 E-value=3.9e-05 Score=61.28 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=23.5
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
-++|.|||||||||+++.|+..++..
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l~~~ 36 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKYGYT 36 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 48899999999999999999988755
No 210
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.52 E-value=5.1e-05 Score=61.93 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.9
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
++|+|||||||||+++.|+..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~ 27 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIP 27 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 7899999999999999999988765
No 211
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.52 E-value=0.00013 Score=59.14 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=22.3
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
+.|+||+||||||+++.|+..+...
T Consensus 25 i~i~G~~GsGKstl~~~l~~~~~~~ 49 (201)
T 1rz3_A 25 LGIDGLSRSGKTTLANQLSQTLREQ 49 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhc
Confidence 7899999999999999999987543
No 212
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.52 E-value=3.5e-05 Score=60.98 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=19.3
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
++|.|+|||||||+++.|+..++.+
T Consensus 8 I~l~G~~GsGKST~a~~La~~l~~~ 32 (183)
T 2vli_A 8 IWINGPFGVGKTHTAHTLHERLPGS 32 (183)
T ss_dssp EEEECCC----CHHHHHHHHHSTTC
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCC
Confidence 7899999999999999999998766
No 213
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.51 E-value=4.9e-05 Score=61.59 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=21.3
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
+.|+|||||||||+++.|++ ++..
T Consensus 5 i~l~G~~GsGKST~~~~La~-lg~~ 28 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTD-LGVP 28 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHT-TTCC
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCc
Confidence 78999999999999999998 5554
No 214
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.51 E-value=4.3e-05 Score=71.37 Aligned_cols=45 Identities=22% Similarity=0.266 Sum_probs=33.3
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEE
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVF 67 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ 67 (236)
+..+..+++.+..| ++|+||+||||||++++|++.+.+. .+++.+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giiti 293 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSI 293 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEE
Confidence 44555555544444 8999999999999999999999766 454443
No 215
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.51 E-value=5.5e-05 Score=59.04 Aligned_cols=25 Identities=32% Similarity=0.292 Sum_probs=23.2
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
++|.|+|||||||+++.|+..++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~~ 27 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNIP 27 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC
Confidence 7899999999999999999988766
No 216
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.51 E-value=3.9e-05 Score=62.36 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=21.7
Q ss_pred eEEECCCCCChHHHHHHHHhhcC
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~ 56 (236)
+.|+||+||||||+++.|++.++
T Consensus 9 i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999999876
No 217
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.51 E-value=5.2e-05 Score=61.81 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.9
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
++|+|||||||||+++.|+..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~ 27 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIP 27 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 7899999999999999999988765
No 218
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.50 E-value=2.3e-05 Score=63.82 Aligned_cols=23 Identities=43% Similarity=0.826 Sum_probs=21.9
Q ss_pred eEEECCCCCChHHHHHHHHhhcC
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~ 56 (236)
++|+||||+||||+++.|++.+.
T Consensus 4 i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHhhcc
Confidence 78999999999999999999986
No 219
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.50 E-value=6.9e-05 Score=60.88 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=24.2
Q ss_pred CCCCcceEEECCCCCChHHHHHHHHhhcC
Q 048723 28 KAWKRGYLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 28 ~~~~rg~lL~GPpGtGKTtlakaia~~l~ 56 (236)
+..++-++|+|||||||||+++.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 33444589999999999999999999874
No 220
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.49 E-value=5.2e-05 Score=62.23 Aligned_cols=25 Identities=32% Similarity=0.611 Sum_probs=23.1
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
++|+|||||||||+++.|+..++..
T Consensus 7 I~l~G~~GsGKsT~a~~La~~l~~~ 31 (220)
T 1aky_A 7 MVLIGPPGAGKGTQAPNLQERFHAA 31 (220)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCce
Confidence 8899999999999999999988755
No 221
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.49 E-value=0.00017 Score=79.32 Aligned_cols=43 Identities=9% Similarity=0.079 Sum_probs=35.8
Q ss_pred ceEEEEeecCc-----cccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723 62 EKGIVFTTNYV-----DKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL 107 (236)
Q Consensus 62 ~~~vi~ttN~~-----~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l 107 (236)
+..+|+|.|++ ..++++++| || ..+.+++|+.+....|+..++
T Consensus 1422 d~~~vaamnPp~~gGr~~l~~Rf~r--~F-~vi~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1422 KIQFVGACNPPTDAGRVQLTHRFLR--HA-PILLVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp SEEEEEEECCTTSTTCCCCCHHHHT--TC-CEEECCCCCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCCCCccCCHHHHh--hc-eEEEeCCCCHHHHHHHHHHHH
Confidence 56788898987 358999999 88 679999999999999977654
No 222
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.49 E-value=6.3e-05 Score=66.88 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=30.0
Q ss_pred HhhhCCCCCc--c--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 23 CAKIGKAWKR--G--YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 23 ~~~~~~~~~r--g--~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
...+.+.+.+ + +.|+||||||||||+++|++.+.++
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3446666666 5 8999999999999999999998776
No 223
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.49 E-value=5.4e-05 Score=60.66 Aligned_cols=25 Identities=36% Similarity=0.689 Sum_probs=22.9
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
++|.|+|||||||+++.|+..++..
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~ 27 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYE 27 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCE
T ss_pred EEEECCCccCHHHHHHHHHHhcCCc
Confidence 7899999999999999999988754
No 224
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.48 E-value=4.2e-05 Score=68.55 Aligned_cols=37 Identities=32% Similarity=0.486 Sum_probs=28.9
Q ss_pred hHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCC
Q 048723 21 EYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 21 ~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
..+.++.+....-++|+||+||||||++++|++.+.+
T Consensus 126 ~~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 126 DKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp SSHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 3556665444444899999999999999999998864
No 225
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.48 E-value=7.6e-05 Score=65.17 Aligned_cols=37 Identities=27% Similarity=0.393 Sum_probs=28.7
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVD 73 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~ 73 (236)
++|+||+||||||+++.|++.+.+. .+-+.+.+.+..
T Consensus 105 i~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~ 141 (304)
T 1rj9_A 105 VLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTF 141 (304)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCS
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCC
Confidence 8899999999999999999999776 444444444433
No 226
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.48 E-value=4.9e-05 Score=60.82 Aligned_cols=27 Identities=22% Similarity=0.476 Sum_probs=23.8
Q ss_pred cceEEECCCCCChHHHHHHHHhhcCCc
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
.-++|+|||||||||+++.|+..++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~ 39 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFT 39 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 348899999999999999999988754
No 227
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.47 E-value=3.2e-05 Score=71.75 Aligned_cols=37 Identities=27% Similarity=0.171 Sum_probs=30.3
Q ss_pred HHhhhCCCCCc-ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723 22 YCAKIGKAWKR-GYLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 22 ~~~~~~~~~~r-g~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
.+.++++.+++ -+.|+||+|||||||+++|++.+.+.
T Consensus 19 ~l~~vsl~i~~e~~~liG~nGsGKSTLl~~l~Gl~~p~ 56 (483)
T 3euj_A 19 GFFARTFDFDELVTTLSGGNGAGKSTTMAGFVTALIPD 56 (483)
T ss_dssp TEEEEEEECCSSEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred cccceEEEEccceEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 45566666555 58899999999999999999998766
No 228
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.46 E-value=0.00011 Score=59.49 Aligned_cols=38 Identities=29% Similarity=0.260 Sum_probs=26.9
Q ss_pred CCCCcceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723 28 KAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN 70 (236)
Q Consensus 28 ~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN 70 (236)
+....-++|+||||+|||||+..|+. . .+..++++++.
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~-~----~~~~v~~i~~~ 54 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL-L----SGKKVAYVDTE 54 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH-H----HCSEEEEEESS
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH-H----cCCcEEEEECC
Confidence 33333389999999999999999998 1 23455555543
No 229
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.46 E-value=5.6e-05 Score=61.09 Aligned_cols=24 Identities=33% Similarity=0.306 Sum_probs=21.6
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
+.|+|||||||||+++.|++ ++..
T Consensus 4 i~i~G~~GsGKSTl~~~L~~-~g~~ 27 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQMFRE-LGAY 27 (204)
T ss_dssp EEEEECTTSSHHHHHHHHHH-TTCE
T ss_pred EEEECCCCcCHHHHHHHHHH-CCCE
Confidence 78999999999999999999 6544
No 230
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.45 E-value=7.6e-05 Score=62.16 Aligned_cols=29 Identities=21% Similarity=0.464 Sum_probs=24.8
Q ss_pred CCcceEEECCCCCChHHHHHHHHhhcCCc
Q 048723 30 WKRGYLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
-++-++|.|||||||+|.++.|+..++..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g~~ 56 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFHFN 56 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCc
Confidence 34447889999999999999999998766
No 231
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.45 E-value=8e-05 Score=61.15 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=23.1
Q ss_pred CCCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723 28 KAWKRG--YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 28 ~~~~rg--~lL~GPpGtGKTtlakaia~~l~ 56 (236)
+++-+| ++|+||+|+|||||++.|++...
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 444444 88999999999999999998865
No 232
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.45 E-value=4.3e-05 Score=60.61 Aligned_cols=24 Identities=38% Similarity=0.635 Sum_probs=22.0
Q ss_pred eEEECCCCCChHHHHHHHHhhcCC
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
++|.|||||||||+++.|+..++.
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 789999999999999999998763
No 233
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.44 E-value=6.8e-05 Score=61.62 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=23.6
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
-++|.|||||||||+++.|+..++..
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l~~~ 32 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKYQLA 32 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 48899999999999999999988755
No 234
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.44 E-value=5.8e-05 Score=66.15 Aligned_cols=29 Identities=21% Similarity=0.094 Sum_probs=24.9
Q ss_pred CCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 30 WKRG--YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 30 ~~rg--~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
..+| +.|+||||||||||++.|++.+.+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~ 117 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW 117 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc
Confidence 4555 7899999999999999999998653
No 235
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.44 E-value=6e-05 Score=62.23 Aligned_cols=26 Identities=23% Similarity=0.561 Sum_probs=23.5
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
-++|+|||||||||+++.|+..++..
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l~~~ 34 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHFELK 34 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSSSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 48899999999999999999988755
No 236
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.42 E-value=0.00016 Score=63.55 Aligned_cols=35 Identities=37% Similarity=0.452 Sum_probs=28.1
Q ss_pred hhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 24 AKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 24 ~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
.++++...++ ++|+||+|+||||++..||..+...
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~ 132 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL 132 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 4566655554 8899999999999999999998654
No 237
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.42 E-value=7.4e-05 Score=61.62 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=23.6
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCcc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYDL 59 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~~ 59 (236)
++|.|||||||+|.++.|+..++...
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~ 28 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVH 28 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeE
Confidence 67899999999999999999988763
No 238
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.42 E-value=7.9e-05 Score=60.04 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=23.3
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
++|.|||||||||+++.|+..++..
T Consensus 7 I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 7 IAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 7899999999999999999998865
No 239
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.41 E-value=7.8e-05 Score=62.94 Aligned_cols=26 Identities=42% Similarity=0.694 Sum_probs=23.6
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCcc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYDL 59 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~~ 59 (236)
+.|+||+||||||+++.|+..++..+
T Consensus 30 I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 30 ITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 88999999999999999998887664
No 240
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.41 E-value=7e-05 Score=70.36 Aligned_cols=36 Identities=33% Similarity=0.412 Sum_probs=30.7
Q ss_pred HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
.+.+++ .+.+| +.|+||||||||||+++|++.+.++
T Consensus 37 ~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~ 74 (538)
T 1yqt_A 37 VLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN 74 (538)
T ss_dssp EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC
T ss_pred cccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 466676 66777 8899999999999999999998766
No 241
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.41 E-value=2.9e-05 Score=71.63 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=29.2
Q ss_pred hhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 24 AKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 24 ~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
.++++.+.+| ++|+||+|||||||+++|++.+.+.
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~ 165 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF 165 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc
Confidence 3566666667 8999999999999999999987544
No 242
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.40 E-value=8.3e-05 Score=59.98 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=22.6
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
++|+|||||||||+++.|+..++..
T Consensus 18 I~l~G~~GsGKsT~~~~L~~~~g~~ 42 (203)
T 1ukz_A 18 IFVLGGPGAGKGTQCEKLVKDYSFV 42 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCce
Confidence 7899999999999999999987654
No 243
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.39 E-value=7.2e-05 Score=61.46 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=23.2
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
++|.|||||||||+++.|+..++..
T Consensus 8 I~l~G~~GsGKsT~a~~La~~l~~~ 32 (217)
T 3be4_A 8 LILIGAPGSGKGTQCEFIKKEYGLA 32 (217)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCce
Confidence 8899999999999999999998765
No 244
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.39 E-value=8.2e-05 Score=61.78 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=23.5
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
.++|.|||||||||+++.|+..++..
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l~~~ 43 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNFCVC 43 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 38899999999999999999998755
No 245
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=97.39 E-value=7.4e-05 Score=51.84 Aligned_cols=69 Identities=10% Similarity=-0.078 Sum_probs=46.9
Q ss_pred ccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHccc----ccccChHHHHHHHHHHHHHHH
Q 048723 92 SYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPK----SDEEDADSCLKNLIEALKVAK 160 (236)
Q Consensus 92 ~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~----~~~~~~~~~~~~~~~~L~~~~ 160 (236)
+.|+.+.|..||+.|+.........++..++. +.||||+||..+|..+ .......++.+++..+|.+..
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~ 74 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 74 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 57999999999999987654332334556665 7799999999887651 112233466666776666544
No 246
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.37 E-value=8.4e-05 Score=60.77 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=23.0
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
++|.|||||||||+++.|+..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~ 27 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIP 27 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCe
Confidence 7899999999999999999988765
No 247
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.37 E-value=7.6e-05 Score=66.62 Aligned_cols=28 Identities=54% Similarity=0.883 Sum_probs=24.1
Q ss_pred Ccc-eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 31 KRG-YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 31 ~rg-~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
+.| ++++||+||||||++++|++.++..
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 344 8899999999999999999998654
No 248
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.36 E-value=8e-05 Score=63.87 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.0
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
++|+||||+|||||+++|++...+.
T Consensus 5 v~lvG~nGaGKSTLln~L~g~~~~~ 29 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKSQVSR 29 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC
Confidence 7899999999999999999998766
No 249
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.36 E-value=0.00012 Score=60.43 Aligned_cols=41 Identities=29% Similarity=0.254 Sum_probs=27.1
Q ss_pred CCCCcceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723 28 KAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN 70 (236)
Q Consensus 28 ~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN 70 (236)
+....-++|+||||+||||++..++...... +...+++++.
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e 60 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALE 60 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcc
Confidence 3333338899999999999988777654322 2445555554
No 250
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.34 E-value=0.00011 Score=58.32 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=20.9
Q ss_pred eEEECCCCCChHHHHHHHHhhc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l 55 (236)
++|.|+|||||||+++.|+..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 251
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.32 E-value=0.00011 Score=60.75 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=22.5
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
++|.|||||||||+++.|+..++..
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~ 27 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLA 27 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCe
Confidence 7899999999999999999988644
No 252
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.32 E-value=0.00013 Score=57.80 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=21.0
Q ss_pred eEEECCCCCChHHHHHHHHhhc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l 55 (236)
++|+|++||||||+++.|+..+
T Consensus 8 i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 8 VWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999987
No 253
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.31 E-value=0.00012 Score=58.36 Aligned_cols=22 Identities=41% Similarity=0.603 Sum_probs=20.9
Q ss_pred eEEECCCCCChHHHHHHHHhhc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l 55 (236)
++|.||+||||||+++.|+..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999988
No 254
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.31 E-value=0.00015 Score=57.85 Aligned_cols=25 Identities=36% Similarity=0.674 Sum_probs=22.7
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
++|+|+|||||||+++.|+..+...
T Consensus 16 i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 7899999999999999999988644
No 255
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.30 E-value=0.00034 Score=62.45 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=21.7
Q ss_pred eEEECCCCCChHHHHHHHHhhcCC
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
++|+||||||||||+..++..+..
T Consensus 64 ~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 64 VEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 889999999999999999988653
No 256
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.29 E-value=0.0001 Score=69.30 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=29.8
Q ss_pred HhhhCCCCC-cc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 23 CAKIGKAWK-RG--YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 23 ~~~~~~~~~-rg--~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
|+-++++.+ +| +.|+||||+|||||+++|++.+.++
T Consensus 14 f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~ 52 (538)
T 3ozx_A 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPN 52 (538)
T ss_dssp CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCC
T ss_pred eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 455566665 44 8899999999999999999998776
No 257
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.29 E-value=0.00015 Score=60.91 Aligned_cols=27 Identities=30% Similarity=0.530 Sum_probs=23.7
Q ss_pred cceEEECCCCCChHHHHHHHHhhcCCc
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
.-++|+|||||||||+++.|+..++..
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~g~~ 56 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSHCYC 56 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 348899999999999999999987655
No 258
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.29 E-value=0.00016 Score=75.82 Aligned_cols=29 Identities=24% Similarity=0.450 Sum_probs=24.7
Q ss_pred CCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 30 WKRG--YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 30 ~~rg--~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
+++| ++||||||||||+|+++++.+....
T Consensus 1079 ~p~g~~~l~~G~~g~GKT~la~~~~~~~~~~ 1109 (1706)
T 3cmw_A 1079 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 1109 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEcCCCCChHHHHHHHHHHhhhc
Confidence 4556 9999999999999999999877544
No 259
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.28 E-value=0.00014 Score=58.47 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=24.2
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNYDL 59 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~~~ 59 (236)
-+.|.||+||||||+++.|+..++.++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~ 30 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPY 30 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCce
Confidence 478999999999999999999988763
No 260
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.28 E-value=4e-05 Score=76.55 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=37.9
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEe
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFT 68 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~t 68 (236)
.++.++++.+.+| +.|+||||+|||||+++|++.+.+. .|-|.+.
T Consensus 687 ~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~---sG~I~~~ 733 (986)
T 2iw3_A 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEVYTH 733 (986)
T ss_dssp CSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS---EEEEEEC
T ss_pred eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEc
Confidence 4678888888888 8899999999999999999998877 5555553
No 261
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.28 E-value=6.6e-05 Score=70.55 Aligned_cols=30 Identities=30% Similarity=0.468 Sum_probs=26.5
Q ss_pred CCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 29 AWKRG--YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 29 ~~~rg--~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
.+++| +.|+||+|||||||+++|++.+.+.
T Consensus 290 ~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~ 321 (538)
T 3ozx_A 290 EAKEGEIIGILGPNGIGKTTFARILVGEITAD 321 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred eECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 34566 8899999999999999999999877
No 262
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.27 E-value=0.00014 Score=60.37 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=23.7
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCcc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYDL 59 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~~ 59 (236)
+.|+|||||||||+++.|+..++.++
T Consensus 19 i~i~G~~gsGKst~~~~l~~~lg~~~ 44 (236)
T 1q3t_A 19 IAIDGPASSGKSTVAKIIAKDFGFTY 44 (236)
T ss_dssp EEEECSSCSSHHHHHHHHHHHHCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCce
Confidence 88999999999999999999887663
No 263
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.27 E-value=0.00026 Score=62.85 Aligned_cols=30 Identities=20% Similarity=0.412 Sum_probs=25.6
Q ss_pred CCCCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723 27 GKAWKRG--YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 27 ~~~~~rg--~lL~GPpGtGKTtlakaia~~l~ 56 (236)
+..+++| +.|+||||||||||++.|+....
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~ 156 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ 156 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4555666 88999999999999999999874
No 264
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.27 E-value=0.00013 Score=61.31 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=24.2
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNYDL 59 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~~~ 59 (236)
-+.|.|||||||||+++.|+..++..+
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~lg~~~ 37 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARALGARY 37 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 388999999999999999999987664
No 265
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.27 E-value=0.00012 Score=59.22 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=22.6
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
++|.|+|||||||+++.|+..++..
T Consensus 13 I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 13 IVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 8899999999999999999987644
No 266
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.25 E-value=7.1e-05 Score=66.86 Aligned_cols=27 Identities=33% Similarity=0.629 Sum_probs=24.6
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNYDL 59 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~~~ 59 (236)
.++|+||||+||||++++|+..++.+|
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 489999999999999999999998764
No 267
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.23 E-value=8.3e-05 Score=69.85 Aligned_cols=31 Identities=29% Similarity=0.470 Sum_probs=26.5
Q ss_pred CCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 28 KAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 28 ~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
+.+.+| +.|+||+|||||||+++|++.+.+.
T Consensus 307 ~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~ 339 (538)
T 1yqt_A 307 GEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT 339 (538)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 334566 8899999999999999999998766
No 268
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.22 E-value=0.00013 Score=69.61 Aligned_cols=36 Identities=31% Similarity=0.391 Sum_probs=30.7
Q ss_pred HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
.+.+++ .+.+| +.|+||||+|||||+++|++.+.++
T Consensus 107 ~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~ 144 (607)
T 3bk7_A 107 VLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN 144 (607)
T ss_dssp EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC
T ss_pred eeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC
Confidence 466666 66777 8899999999999999999998766
No 269
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.22 E-value=0.00019 Score=59.91 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=23.2
Q ss_pred cc--eEEECCCCCChHHHHHHHHhhcCC
Q 048723 32 RG--YLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 32 rg--~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
+| ++|.|||||||||+++.|+..++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 55 778999999999999999999864
No 270
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.21 E-value=3.1e-05 Score=64.99 Aligned_cols=25 Identities=44% Similarity=0.456 Sum_probs=23.1
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
++|+||+|||||||+++|+..+.+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~~~ 54 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALIPD 54 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhcccccC
Confidence 6789999999999999999999766
No 271
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.21 E-value=0.00017 Score=58.41 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=22.8
Q ss_pred CCCcc--eEEECCCCCChHHHHHHHHhhc
Q 048723 29 AWKRG--YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 29 ~~~rg--~lL~GPpGtGKTtlakaia~~l 55 (236)
.++++ +.|+|||||||||+++.|++.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34444 7799999999999999999976
No 272
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.21 E-value=0.0002 Score=60.65 Aligned_cols=22 Identities=45% Similarity=0.717 Sum_probs=20.5
Q ss_pred eEEECCCCCChHHHHHHHHhhc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l 55 (236)
++|+|+|||||||+++.|+..+
T Consensus 7 Ivl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 7 IILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999873
No 273
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.20 E-value=0.00044 Score=60.04 Aligned_cols=24 Identities=33% Similarity=0.613 Sum_probs=22.2
Q ss_pred eEEECCCCCChHHHHHHHHhhcCC
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
++|+||+|+||||++..||..+..
T Consensus 108 i~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 108 IVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 889999999999999999998864
No 274
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.20 E-value=0.00014 Score=58.74 Aligned_cols=26 Identities=27% Similarity=0.176 Sum_probs=22.8
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
-++|.|+|||||||+++.|+..++..
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 38899999999999999999987543
No 275
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.19 E-value=0.00056 Score=60.75 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=26.1
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN 70 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN 70 (236)
++|+||||+|||||+..++...... +..++++++.
T Consensus 64 v~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E 98 (349)
T 2zr9_A 64 IEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAE 98 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECC
Confidence 8899999999999999998765433 2444555554
No 276
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.19 E-value=0.00024 Score=57.00 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=21.1
Q ss_pred eEEECCCCCChHHHHHHHHhhc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l 55 (236)
++|.|||||||||+++.|+..+
T Consensus 7 I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 7 IVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 8899999999999999999987
No 277
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.19 E-value=9.4e-05 Score=70.49 Aligned_cols=31 Identities=26% Similarity=0.464 Sum_probs=26.6
Q ss_pred CCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 28 KAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 28 ~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
+.+.+| +.|+||||+|||||+++|++.+.+.
T Consensus 377 ~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~ 409 (607)
T 3bk7_A 377 GEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT 409 (607)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 334566 8899999999999999999998766
No 278
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.18 E-value=0.00011 Score=67.23 Aligned_cols=33 Identities=30% Similarity=0.407 Sum_probs=28.2
Q ss_pred HhhhCCCCCcc----eEEECCCCCChHHHHHHHHhhc
Q 048723 23 CAKIGKAWKRG----YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 23 ~~~~~~~~~rg----~lL~GPpGtGKTtlakaia~~l 55 (236)
+.++++.+++| ++|+||||+|||||+++|++..
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 77888888888 5689999999999999999874
No 279
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.00011 Score=69.96 Aligned_cols=36 Identities=31% Similarity=0.435 Sum_probs=30.8
Q ss_pred HhhhCCCCCcc-------eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 23 CAKIGKAWKRG-------YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 23 ~~~~~~~~~rg-------~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
+.++++.+.+| +.|+||+|+|||||+++|++.+.+.
T Consensus 363 l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~ 405 (608)
T 3j16_B 363 QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD 405 (608)
T ss_dssp CSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS
T ss_pred cCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 45566777777 7899999999999999999998776
No 280
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.15 E-value=7.1e-05 Score=74.80 Aligned_cols=34 Identities=44% Similarity=0.596 Sum_probs=29.8
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHh
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMAN 53 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~ 53 (236)
..++.+++|.+.+| +.|+||||+|||||+++|++
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34677788888888 88999999999999999995
No 281
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.15 E-value=0.00023 Score=56.96 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=21.7
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
+.|+|++||||||+++.|+.. +..
T Consensus 11 I~i~G~~GsGKST~~~~La~~-g~~ 34 (203)
T 1uf9_A 11 IGITGNIGSGKSTVAALLRSW-GYP 34 (203)
T ss_dssp EEEEECTTSCHHHHHHHHHHT-TCC
T ss_pred EEEECCCCCCHHHHHHHHHHC-CCE
Confidence 789999999999999999997 544
No 282
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.13 E-value=0.00024 Score=57.98 Aligned_cols=25 Identities=40% Similarity=0.472 Sum_probs=21.6
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
-++|.|++||||||+++.|+. ++..
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-lg~~ 30 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-LGIN 30 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCE
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCE
Confidence 378999999999999999998 5544
No 283
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.12 E-value=0.00059 Score=61.89 Aligned_cols=26 Identities=35% Similarity=0.393 Sum_probs=23.2
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCcc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYDL 59 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~~ 59 (236)
++|+|||||||||+++.|+..+++.+
T Consensus 261 Iil~G~pGSGKSTla~~L~~~~~~~~ 286 (416)
T 3zvl_A 261 VVAVGFPGAGKSTFIQEHLVSAGYVH 286 (416)
T ss_dssp EEEESCTTSSHHHHHHHHTGGGTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCcEE
Confidence 78899999999999999999887654
No 284
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.11 E-value=0.00035 Score=66.77 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=22.9
Q ss_pred eEEECCCCCChHHH-HHHHHhhcCCcccCceEEEEeecC
Q 048723 34 YLLYGPPGTGKSTM-IAAMANFLNYDLVGEKGIVFTTNY 71 (236)
Q Consensus 34 ~lL~GPpGtGKTtl-akaia~~l~~~~~~~~~vi~ttN~ 71 (236)
.|+.||||||||++ +..|...+... ..+++.+.||.
T Consensus 208 ~lI~GPPGTGKT~ti~~~I~~l~~~~--~~ILv~a~TN~ 244 (646)
T 4b3f_X 208 AIIHGPPGTGKTTTVVEIILQAVKQG--LKVLCCAPSNI 244 (646)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTT--CCEEEEESSHH
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEcCchH
Confidence 68899999999964 44444444333 24555555553
No 285
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.09 E-value=0.0015 Score=72.10 Aligned_cols=75 Identities=24% Similarity=0.283 Sum_probs=59.3
Q ss_pred CcceEEECCCCCChHHHHHHHHhhcCCcc---------------------------------------------------
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFLNYDL--------------------------------------------------- 59 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l~~~~--------------------------------------------------- 59 (236)
..|.++.||+|||||.+++.||+.+++.+
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~~~vLSvv~~qi~~I 683 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEERILSAVSQQIQTI 683 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999999887
Q ss_pred -------------c-C-------ceEEEEeec----CccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723 60 -------------V-G-------EKGIVFTTN----YVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108 (236)
Q Consensus 60 -------------~-~-------~~~vi~ttN----~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~ 108 (236)
. | ...|++|.| .-..||.++.. || +.|.+.+|+.+....+.-.-.+
T Consensus 684 ~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~i~ei~L~s~G 754 (3245)
T 3vkg_A 684 QVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREMIAQVMLYSQG 754 (3245)
T ss_dssp HHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHHHHHHHHHTTT
T ss_pred HHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHHHHHHHHHHcc
Confidence 1 2 345677777 34579999988 78 7799999999887777554433
No 286
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.08 E-value=0.00075 Score=58.43 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=26.6
Q ss_pred hhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCc
Q 048723 24 AKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 24 ~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
.++++..+.-++|+||+|+||||++..||..+...
T Consensus 91 ~~i~~~~~~~i~i~g~~G~GKTT~~~~la~~~~~~ 125 (295)
T 1ls1_A 91 RLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (295)
T ss_dssp CCCCCCSSEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred ceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34555522237789999999999999999998644
No 287
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.08 E-value=0.00028 Score=57.43 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=22.8
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
+.|+|++||||||+++.|+..++.+
T Consensus 15 IgltG~~GSGKSTva~~L~~~lg~~ 39 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKYGAH 39 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCE
Confidence 7889999999999999999987766
No 288
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.08 E-value=0.00031 Score=57.24 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=22.4
Q ss_pred cceEEECCCCCChHHHHHHHHhhcC
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~ 56 (236)
.-++|+|+|||||||+++.|+..++
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3388999999999999999999886
No 289
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.08 E-value=0.00021 Score=60.93 Aligned_cols=29 Identities=24% Similarity=0.224 Sum_probs=23.4
Q ss_pred CCCCCcceEEECCCCCChHHHHHHHHhhc
Q 048723 27 GKAWKRGYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 27 ~~~~~rg~lL~GPpGtGKTtlakaia~~l 55 (236)
|+....-++|+||||||||||+..|+..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44433348999999999999999999865
No 290
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.08 E-value=0.00089 Score=61.10 Aligned_cols=50 Identities=22% Similarity=0.237 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCc
Q 048723 7 EEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 7 ~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
+.+.+.+...+.... .++++..+..++|+||+|+||||++..||..+...
T Consensus 76 ~~v~~~L~~~~~~~~--~~i~l~~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 76 ATVYEALKEALGGEA--RLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp HHHHHHHHHHTTSSC--CCCCCCSSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCc--ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 334444444443321 34555522337889999999999999999998654
No 291
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.06 E-value=0.00019 Score=55.85 Aligned_cols=28 Identities=36% Similarity=0.590 Sum_probs=22.8
Q ss_pred CCCCcc-eEEECCCCCChHHHHHHHHhhc
Q 048723 28 KAWKRG-YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 28 ~~~~rg-~lL~GPpGtGKTtlakaia~~l 55 (236)
+....+ .+|+||+|+|||+++.+|.-.+
T Consensus 19 i~f~~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 19 VEFKEGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEcCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 344456 6889999999999999998655
No 292
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.06 E-value=0.00069 Score=61.99 Aligned_cols=38 Identities=21% Similarity=0.178 Sum_probs=27.4
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN 70 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN 70 (236)
.++|.||||||||+++.+++..+.......+++++.||
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~ 84 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTH 84 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcH
Confidence 48999999999999999999887433111345555554
No 293
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.05 E-value=0.00019 Score=63.29 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=22.3
Q ss_pred CCCCcceEEECCCCCChHHHHHHHHhh
Q 048723 28 KAWKRGYLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 28 ~~~~rg~lL~GPpGtGKTtlakaia~~ 54 (236)
++..+.++|+||||||||+|+..++..
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 333344799999999999999999987
No 294
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.05 E-value=0.00011 Score=58.72 Aligned_cols=44 Identities=18% Similarity=0.132 Sum_probs=26.5
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD 76 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld 76 (236)
.+.|+||+|||||||++.|++.+.+.-...+.|.+...++..++
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~ 47 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEID 47 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC---------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCC
Confidence 37899999999999999999998644111355555544434443
No 295
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.05 E-value=0.00033 Score=66.73 Aligned_cols=29 Identities=31% Similarity=0.343 Sum_probs=25.8
Q ss_pred CCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 30 WKRG--YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 30 ~~rg--~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
+.+| +.|+||||+|||||+++|++.+.++
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~ 130 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQKPN 130 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSCCC
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCCCCC
Confidence 4456 8899999999999999999998776
No 296
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.04 E-value=0.00032 Score=58.91 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=23.1
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
+.|.|||||||||+++.|+..++.+
T Consensus 25 I~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 25 IGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhh
Confidence 7899999999999999999988865
No 297
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.01 E-value=6e-05 Score=67.71 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=32.5
Q ss_pred ChhHHhhhCCCCCcc-eEEECCCCCChHHHHHHHHhhcCC
Q 048723 19 GKEYCAKIGKAWKRG-YLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg-~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
+...|+++++.+.+| ++|+||||+|||||+++|...++.
T Consensus 47 nf~~l~~v~l~~~~G~~~lvG~NGaGKStLl~aI~~l~~~ 86 (415)
T 4aby_A 47 NLATITQLELELGGGFCAFTGETGAGKSIIVDALGLLLGG 86 (415)
T ss_dssp EETTEEEEEEECCSSEEEEEESHHHHHHHHTHHHHHHTTC
T ss_pred cccceeeEEEecCCCcEEEECCCCCCHHHHHHHHHHHhCC
Confidence 344677778888887 779999999999999999888864
No 298
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.01 E-value=0.00033 Score=61.70 Aligned_cols=27 Identities=30% Similarity=0.562 Sum_probs=23.6
Q ss_pred cceEEECCCCCChHHHHHHHHhhcCCc
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
+.++|+||+||||||+++.||..++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~ 32 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCE 32 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 358899999999999999999988633
No 299
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.00 E-value=0.0012 Score=58.82 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=28.4
Q ss_pred CCCCcceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723 28 KAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN 70 (236)
Q Consensus 28 ~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN 70 (236)
++..+-++|+||||+|||||+..++...... +...+++++.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E 100 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAE 100 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCC
Confidence 3333448899999999999999998775432 2345555553
No 300
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.00 E-value=0.0002 Score=63.93 Aligned_cols=33 Identities=27% Similarity=0.535 Sum_probs=26.0
Q ss_pred HhhhCCCCCcc-eEEECCCCCChHHHHHHHHhhc
Q 048723 23 CAKIGKAWKRG-YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 23 ~~~~~~~~~rg-~lL~GPpGtGKTtlakaia~~l 55 (236)
|+++.+.++.| .+|+||+|+|||||..+|+-.+
T Consensus 14 ~~~~~i~~~~g~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 14 LKNVDIEFQSGITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEEEEECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccceEEecCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34455666667 6789999999999999998664
No 301
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.00 E-value=0.00078 Score=58.47 Aligned_cols=33 Identities=27% Similarity=0.286 Sum_probs=25.4
Q ss_pred hCCCCC-cceEEECCCCCChHHHHHHHHhhcCCc
Q 048723 26 IGKAWK-RGYLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 26 ~~~~~~-rg~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
+++..+ .-++++||+|+||||++..||..+...
T Consensus 92 i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~ 125 (297)
T 1j8m_F 92 VIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKK 125 (297)
T ss_dssp CSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHHT
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 444443 227789999999999999999988543
No 302
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.99 E-value=0.00042 Score=59.99 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=22.3
Q ss_pred eEEECCCCCChHHHHHHHHhhcCC
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
+.|.||+||||||+++.|+..+..
T Consensus 34 i~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhhh
Confidence 789999999999999999999864
No 303
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.97 E-value=0.00043 Score=56.36 Aligned_cols=26 Identities=35% Similarity=0.416 Sum_probs=23.7
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
-+.|+||+||||||+++.|+..++.+
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~~ 30 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSMI 30 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCc
Confidence 38899999999999999999988766
No 304
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.96 E-value=0.00076 Score=61.72 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=22.2
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
++|+||||+||||++..||..+...
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 7889999999999999999888543
No 305
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.93 E-value=0.0011 Score=58.56 Aligned_cols=42 Identities=19% Similarity=0.112 Sum_probs=28.9
Q ss_pred CCcc--eEEECCCCCChHHHHHHHHhhcCCcc----cCceEEEEeecC
Q 048723 30 WKRG--YLLYGPPGTGKSTMIAAMANFLNYDL----VGEKGIVFTTNY 71 (236)
Q Consensus 30 ~~rg--~lL~GPpGtGKTtlakaia~~l~~~~----~~~~~vi~ttN~ 71 (236)
+++| ++|+||||+|||+|+..|+.....+. .+...+++++..
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 3444 88999999999999999998743211 124555555543
No 306
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.92 E-value=0.00045 Score=59.84 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=23.5
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCcccCceEEEE
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVF 67 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ 67 (236)
+.|+||||+|||||+++|++...+. .+-+.+
T Consensus 172 v~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~ 202 (301)
T 1u0l_A 172 STMAGLSGVGKSSLLNAINPGLKLR---VSEVSE 202 (301)
T ss_dssp EEEECSTTSSHHHHHHHHSTTCCCC---------
T ss_pred EEEECCCCCcHHHHHHHhccccccc---ccceec
Confidence 7899999999999999999998877 444444
No 307
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.90 E-value=0.00017 Score=58.29 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=22.4
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
++|.||+||||||+++.|+..+...
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 6889999999999999999988644
No 308
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.89 E-value=0.00027 Score=63.11 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=27.7
Q ss_pred HHhhhCCCCCcc-eEEECCCCCChHHHHHHHHhhc
Q 048723 22 YCAKIGKAWKRG-YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 22 ~~~~~~~~~~rg-~lL~GPpGtGKTtlakaia~~l 55 (236)
.|.++++.+..| ++|+||||+||||++.+|...+
T Consensus 16 ~~~~~~~~~~~g~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 16 NLAPGTLNFPEGVTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp TCCSEEEECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceeeeEEEEcCCeEEEECCCCCChhHHHHHHHHhc
Confidence 455666777777 6799999999999999999743
No 309
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.88 E-value=0.0012 Score=60.44 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=22.6
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
-++|+||||+||||++..||..+...
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 38899999999999999999887544
No 310
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=96.87 E-value=0.00044 Score=49.08 Aligned_cols=49 Identities=12% Similarity=-0.098 Sum_probs=36.7
Q ss_pred ecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723 90 EMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMP 138 (236)
Q Consensus 90 ~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~ 138 (236)
..+.|+.+.|..|++.++.........++..+++ +.|||++||..+|..
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~e 56 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTE 56 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHH
Confidence 4578999999999999987544332233555665 779999999987775
No 311
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.87 E-value=0.00052 Score=58.70 Aligned_cols=23 Identities=35% Similarity=0.325 Sum_probs=20.7
Q ss_pred ceEEECCCCCChHHHHHHHHhhc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l 55 (236)
-++|.|||||||||+++.|+..+
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999999853
No 312
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.86 E-value=0.00063 Score=59.97 Aligned_cols=36 Identities=28% Similarity=0.332 Sum_probs=28.2
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~ 56 (236)
.++.++.+...++ +.|+||||+||||++..|++.+.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3455566655555 78999999999999999998763
No 313
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.86 E-value=0.00092 Score=60.51 Aligned_cols=21 Identities=33% Similarity=0.358 Sum_probs=18.4
Q ss_pred eEEECCCCCChHHHHHHHHhh
Q 048723 34 YLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~ 54 (236)
++|+||||||||||++.|+-.
T Consensus 181 ~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 181 TELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHH
Confidence 889999999999999977633
No 314
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.83 E-value=0.00028 Score=61.32 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=20.5
Q ss_pred hhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhh
Q 048723 16 FSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 16 ~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~ 54 (236)
.+....++.++++. ++|+||+|+|||||++.|++.
T Consensus 7 ~~~~~~~l~~~~~~----I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 7 QVHRKSVKKGFEFT----LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp -----------CEE----EEEEEETTSSHHHHHHHHHC-
T ss_pred eECCEEEEcCCCEE----EEEECCCCCCHHHHHHHHhCC
Confidence 34445556665554 599999999999999999876
No 315
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.82 E-value=0.00023 Score=68.29 Aligned_cols=29 Identities=31% Similarity=0.460 Sum_probs=25.9
Q ss_pred hhHHhhhCCCCCcc--eEEECCCCCChHHHH
Q 048723 20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMI 48 (236)
Q Consensus 20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtla 48 (236)
...+++++|.+++| +.|+||||||||||+
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHh
Confidence 34688899999998 889999999999997
No 316
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.81 E-value=0.0013 Score=62.59 Aligned_cols=38 Identities=32% Similarity=0.397 Sum_probs=25.1
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN 70 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN 70 (236)
.+++.||||||||+++..+...+-..-...+++.+.||
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn 234 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSN 234 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSH
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcH
Confidence 37889999999999887777665321012455555555
No 317
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.80 E-value=0.001 Score=54.73 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=23.3
Q ss_pred CcceEEECCCCCChHHHHHHHHhhcC
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l~ 56 (236)
.++++|.||+|+|||+++..|+....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 45589999999999999999998876
No 318
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.80 E-value=0.00084 Score=62.54 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=26.3
Q ss_pred CCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 27 GKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 27 ~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
+..+.+| ++|+||||||||||++.|++.....
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~ 308 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN 308 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 3455556 8899999999999999999987654
No 319
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.79 E-value=0.00027 Score=56.78 Aligned_cols=32 Identities=19% Similarity=0.220 Sum_probs=25.1
Q ss_pred HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhc
Q 048723 22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l 55 (236)
.+.+ ++..++ ++|+||||+|||||+++|++..
T Consensus 17 ~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 17 DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4555 555555 8999999999999999998765
No 320
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.79 E-value=0.00044 Score=56.52 Aligned_cols=29 Identities=34% Similarity=0.554 Sum_probs=23.4
Q ss_pred CCCCcc-eEEECCCCCChHHHHHHHHhhcC
Q 048723 28 KAWKRG-YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 28 ~~~~rg-~lL~GPpGtGKTtlakaia~~l~ 56 (236)
+.+.++ .+|+||+|+||||++.+|.-.+.
T Consensus 19 i~f~~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 19 VEFKEGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EECCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEeCCCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 444456 78899999999999999986664
No 321
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.79 E-value=0.0007 Score=54.17 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.9
Q ss_pred ceEEECCCCCChHHHHHHHHhhc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l 55 (236)
.++|+||+|+|||||++.|++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 38999999999999999999864
No 322
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.78 E-value=0.00063 Score=54.30 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=21.1
Q ss_pred eEEECCCCCChHHHHHHHHhhcC
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~ 56 (236)
++|+||+|+|||||++.+++...
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999998754
No 323
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.78 E-value=0.0011 Score=62.56 Aligned_cols=24 Identities=46% Similarity=0.602 Sum_probs=21.3
Q ss_pred ceEEECCCCCChHHHHHHHHhhcC
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~ 56 (236)
.++|.|||||||||++.+|+..+.
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~ 229 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAE 229 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 388899999999999999998764
No 324
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.76 E-value=0.00049 Score=56.63 Aligned_cols=27 Identities=33% Similarity=0.278 Sum_probs=20.8
Q ss_pred CCCCcceEEECCCCCChHHHHHHHHhh
Q 048723 28 KAWKRGYLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 28 ~~~~rg~lL~GPpGtGKTtlakaia~~ 54 (236)
++...-++|+|+||+|||+++..++..
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 333333889999999999999887643
No 325
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.75 E-value=0.00055 Score=56.67 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=22.4
Q ss_pred CCCcc--eEEECCCCCChHHHHHHHHhh
Q 048723 29 AWKRG--YLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 29 ~~~rg--~lL~GPpGtGKTtlakaia~~ 54 (236)
...+| +.|.||+||||||+++.|++.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34555 789999999999999999987
No 326
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.75 E-value=0.00087 Score=53.69 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=22.1
Q ss_pred cceEEECCCCCChHHHHHHHHhhcC
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~ 56 (236)
+-++|+||+|+||||+++.|...+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 4488999999999999999998764
No 327
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.75 E-value=0.0023 Score=57.17 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=26.4
Q ss_pred cceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN 70 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN 70 (236)
+-++|+||||+|||+|+..++...... +..++++++.
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E 111 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAE 111 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECC
Confidence 338899999999999999988765322 2344555554
No 328
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.74 E-value=0.00063 Score=58.34 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=20.8
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
++|+|+|||||||+++.|+ .++.+
T Consensus 78 I~I~G~~GSGKSTva~~La-~lg~~ 101 (281)
T 2f6r_A 78 LGLTGISGSGKSSVAQRLK-NLGAY 101 (281)
T ss_dssp EEEEECTTSCHHHHHHHHH-HHTCE
T ss_pred EEEECCCCCCHHHHHHHHH-HCCCc
Confidence 7889999999999999999 45544
No 329
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.71 E-value=0.0013 Score=57.37 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=29.0
Q ss_pred CCCCcceEEECCCCCChHHHHHHHHhhcCCcc----cCceEEEEeecC
Q 048723 28 KAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----VGEKGIVFTTNY 71 (236)
Q Consensus 28 ~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----~~~~~vi~ttN~ 71 (236)
++...-++|+||||+|||+|+..++.....+- .+...+++++..
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 33333388999999999999999998753220 024455555543
No 330
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.70 E-value=0.00099 Score=53.26 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=21.7
Q ss_pred ceEEECCCCCChHHHHHHHHhhcC
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~ 56 (236)
-+.|+|++||||||++..|+..+.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhhH
Confidence 378999999999999999999874
No 331
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.70 E-value=0.00093 Score=53.62 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=27.5
Q ss_pred hHHhhhCCCCCcc-eEEECCCCCChHHHHHHHHh
Q 048723 21 EYCAKIGKAWKRG-YLLYGPPGTGKSTMIAAMAN 53 (236)
Q Consensus 21 ~~~~~~~~~~~rg-~lL~GPpGtGKTtlakaia~ 53 (236)
.++..+++..+.. ++|+|+||+|||||++.+.+
T Consensus 14 ~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 14 SVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4667777776666 89999999999999999875
No 332
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.70 E-value=0.00085 Score=60.73 Aligned_cols=32 Identities=25% Similarity=0.528 Sum_probs=27.8
Q ss_pred hhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723 25 KIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 25 ~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~ 56 (236)
++.+++.+| ++|+||||+|||||++.|++..+
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 456778888 99999999999999999998763
No 333
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.69 E-value=0.00093 Score=54.53 Aligned_cols=29 Identities=17% Similarity=0.127 Sum_probs=26.0
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCCcccC
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNYDLVG 61 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~~~~~ 61 (236)
-+.|.||+||||||+++.||..++++|..
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 37899999999999999999999998643
No 334
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.69 E-value=0.00061 Score=64.18 Aligned_cols=29 Identities=34% Similarity=0.409 Sum_probs=25.2
Q ss_pred CCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 30 WKRG--YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 30 ~~rg--~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
..+| +.|+|||||||||++++|++.+...
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~ 396 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEM 396 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTT
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhccc
Confidence 3455 8899999999999999999999765
No 335
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.67 E-value=0.00026 Score=67.97 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=26.7
Q ss_pred HHhhhCCCCCcc--eEEECCCCCChHHHHHHHH
Q 048723 22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMA 52 (236)
Q Consensus 22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia 52 (236)
.++++++.+++| +.|+||||||||||+++|.
T Consensus 337 ~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 337 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 477788888888 8899999999999997654
No 336
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.66 E-value=0.0011 Score=55.74 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=23.8
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCcc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYDL 59 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~~ 59 (236)
+.|.|||||||||+++.|+..++..+
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~ 36 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQ 36 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCe
Confidence 78999999999999999999988773
No 337
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.65 E-value=0.00087 Score=53.34 Aligned_cols=33 Identities=30% Similarity=0.411 Sum_probs=20.1
Q ss_pred HHhhhCCCCCcc-eEEECCCCCChHHHHHHHHhh
Q 048723 22 YCAKIGKAWKRG-YLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 22 ~~~~~~~~~~rg-~lL~GPpGtGKTtlakaia~~ 54 (236)
.++++++..+.. ++|+|+||+|||||++.+.+.
T Consensus 13 ~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 13 VLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -----------CEEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHhhccCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 445566655544 899999999999999999873
No 338
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.65 E-value=0.00082 Score=61.10 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.2
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
+.|+||||+|||||+++|++...+.
T Consensus 72 valvG~nGaGKSTLln~L~Gl~~p~ 96 (413)
T 1tq4_A 72 VAVTGETGSGKSSFINTLRGIGNEE 96 (413)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCTTS
T ss_pred EEEECCCCCcHHHHHHHHhCCCCcc
Confidence 6899999999999999999976544
No 339
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.65 E-value=0.0034 Score=55.32 Aligned_cols=64 Identities=19% Similarity=0.260 Sum_probs=34.9
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh-cC-CcccEEecccCCHHHH
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR-RG-RMDKRIEMSYCCFEAF 99 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r-~g-R~d~~i~~~~p~~~~~ 99 (236)
++++||||||||||+..++........+...+++++. +.+++...+ .| -.+..+.....+.++.
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E--~s~~~~ra~~lGvd~d~llv~~~~~~E~~ 96 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSE--FGITPAYLRSMGVDPERVIHTPVQSLEQL 96 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESS--CCCCHHHHHHTTCCGGGEEEEECSBHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecc--chhhHHHHHHhCCCHHHeEEEcCCCHHHH
Confidence 7889999999999977776654321112445555553 334443333 22 1233444433445544
No 340
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.64 E-value=0.00098 Score=70.90 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=30.9
Q ss_pred CCCCcceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723 28 KAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN 70 (236)
Q Consensus 28 ~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN 70 (236)
++.+++++|+||||||||+|+.+++...... |...+++++.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~--G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAE 1464 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcc
Confidence 5566669999999999999999998887554 3444444443
No 341
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.63 E-value=0.001 Score=57.72 Aligned_cols=24 Identities=29% Similarity=0.564 Sum_probs=21.7
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
+.|+||||+|||||+++|+ .+.+.
T Consensus 168 ~~l~G~sG~GKSTLln~l~-~~~~~ 191 (302)
T 2yv5_A 168 CILAGPSGVGKSSILSRLT-GEELR 191 (302)
T ss_dssp EEEECSTTSSHHHHHHHHH-SCCCC
T ss_pred EEEECCCCCCHHHHHHHHH-HhhCc
Confidence 7899999999999999999 76655
No 342
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.61 E-value=0.0011 Score=58.71 Aligned_cols=23 Identities=48% Similarity=0.761 Sum_probs=21.1
Q ss_pred eEEECCCCCChHHHHHHHHhhcC
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~ 56 (236)
+.|+||||+|||||+.+|.+.+.
T Consensus 77 v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 77 VGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHhh
Confidence 88999999999999999998763
No 343
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.59 E-value=0.00065 Score=59.77 Aligned_cols=29 Identities=34% Similarity=0.532 Sum_probs=23.1
Q ss_pred CCCCCcc-eEEECCCCCChHHHHHHHHhhc
Q 048723 27 GKAWKRG-YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 27 ~~~~~rg-~lL~GPpGtGKTtlakaia~~l 55 (236)
.+.+.+| .+|+||||+|||+++.||.-.+
T Consensus 18 ~i~f~~~~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 18 VVEFKEGINLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp EEECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEcCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3445566 6899999999999999986654
No 344
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.58 E-value=0.0018 Score=52.22 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=21.7
Q ss_pred CcceEEECCCCCChHHHHHHHHhh
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~ 54 (236)
.+|++|.||||+||||++..+...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 467999999999999999999874
No 345
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.58 E-value=0.00092 Score=59.22 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=23.2
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
-++|+||+|||||+|+..||..++..
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~e 67 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPLE 67 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCCc
Confidence 38899999999999999999988743
No 346
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.57 E-value=0.0011 Score=59.20 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=22.9
Q ss_pred eEEECCCCCChHHHHHHHHhhcC-Cc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLN-YD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~-~~ 58 (236)
++|+||||+|||||+++|++... +.
T Consensus 218 ~~lvG~sG~GKSTLln~L~g~~~~~~ 243 (358)
T 2rcn_A 218 SIFAGQSGVGKSSLLNALLGLQNEIL 243 (358)
T ss_dssp EEEECCTTSSHHHHHHHHHCCSSCCC
T ss_pred EEEECCCCccHHHHHHHHhccccccc
Confidence 88999999999999999999887 55
No 347
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.54 E-value=0.0013 Score=58.30 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=22.6
Q ss_pred cceEEECCCCCChHHHHHHHHhhcC
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~ 56 (236)
+-++|.||+||||||+++.||..++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3488999999999999999999886
No 348
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=96.54 E-value=0.0018 Score=59.89 Aligned_cols=34 Identities=12% Similarity=-0.040 Sum_probs=23.2
Q ss_pred ceEEEEeecCcc-----------ccchHHHhcCCcccEE-ecccCCHH
Q 048723 62 EKGIVFTTNYVD-----------KLDPALIRRGRMDKRI-EMSYCCFE 97 (236)
Q Consensus 62 ~~~vi~ttN~~~-----------~ld~al~r~gR~d~~i-~~~~p~~~ 97 (236)
...||+|+|... .|+++++. |||.++ .+++|+.+
T Consensus 339 rf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e 384 (506)
T 3f8t_A 339 RCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPG 384 (506)
T ss_dssp CCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC-----
T ss_pred CeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecCCCChh
Confidence 467889999875 78899999 998766 45666654
No 349
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.54 E-value=0.001 Score=53.72 Aligned_cols=32 Identities=22% Similarity=0.169 Sum_probs=24.8
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN 70 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN 70 (236)
++++|++|||||+++..++.. +. .++.+.|..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~----~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-AP----QVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CS----SEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CC----CeEEEecCC
Confidence 688999999999999999976 42 355555543
No 350
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.51 E-value=0.00069 Score=59.10 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=25.1
Q ss_pred hCCCCCcc-eEEECCCCCChHHHHHHHHhhcC
Q 048723 26 IGKAWKRG-YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 26 ~~~~~~rg-~lL~GPpGtGKTtlakaia~~l~ 56 (236)
+.+.+.+| .+|+||+|+|||+|+.+|.-.++
T Consensus 18 ~~l~~~~g~~~i~G~NGsGKS~ll~ai~~llg 49 (322)
T 1e69_A 18 SLIGFSDRVTAIVGPNGSGKSNIIDAIKWVFG 49 (322)
T ss_dssp EEEECCSSEEEEECCTTTCSTHHHHHHHHTSC
T ss_pred eEEecCCCcEEEECCCCCcHHHHHHHHHHHhC
Confidence 34555566 78999999999999999997663
No 351
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.51 E-value=0.0015 Score=62.08 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=21.2
Q ss_pred eEEECCCCCChHHHHHHHHhhcCC
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
+.|+||+|||||||+++|++.+.+
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--
T ss_pred EEEECCCCChHHHHHHHHhCCCCC
Confidence 899999999999999999998644
No 352
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.50 E-value=0.0023 Score=55.74 Aligned_cols=40 Identities=13% Similarity=0.122 Sum_probs=27.6
Q ss_pred CCCCcceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEee
Q 048723 28 KAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTT 69 (236)
Q Consensus 28 ~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~tt 69 (236)
+....-++|.|+||+|||+|+..+|...... +..+++++.
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~--g~~vl~~sl 104 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSL 104 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTT--TCEEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEEC
Confidence 3333338899999999999999998765433 234455554
No 353
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.50 E-value=0.0011 Score=58.81 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.3
Q ss_pred cceEE--ECCCCCChHHHHHHHHhhc
Q 048723 32 RGYLL--YGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 32 rg~lL--~GPpGtGKTtlakaia~~l 55 (236)
+.++| +||||+|||++++.+++.+
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 45888 9999999999999999876
No 354
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.50 E-value=0.0013 Score=50.91 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=20.0
Q ss_pred ceEEECCCCCChHHHHHHHHhh
Q 048723 33 GYLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~ 54 (236)
.++|+|+||+|||||++.+.+.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3889999999999999999874
No 355
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.46 E-value=0.0017 Score=58.90 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=23.0
Q ss_pred cceEEECCCCCChHHHHHHHHhhcCCc
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
.-++|+||+|+||||++.+|+..+...
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 338899999999999999999987653
No 356
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.46 E-value=0.0023 Score=62.75 Aligned_cols=38 Identities=32% Similarity=0.429 Sum_probs=25.2
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecC
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNY 71 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~ 71 (236)
+++.||||||||+++..++..+-..-...+++.+.||.
T Consensus 374 ~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~ 411 (800)
T 2wjy_A 374 SLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNI 411 (800)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHH
Confidence 78899999999998777776653210124555555553
No 357
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.42 E-value=0.00076 Score=61.40 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=21.0
Q ss_pred eEEECCCCCChHHHHHHHHhhcC
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~ 56 (236)
++|+||||+|||||+++|++...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCC
Confidence 69999999999999999998764
No 358
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.41 E-value=0.00088 Score=65.74 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=26.2
Q ss_pred HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhc
Q 048723 22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l 55 (236)
++.++++. ..| ++|+||||+||||++++|++..
T Consensus 597 vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 597 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 45556666 444 8899999999999999999863
No 359
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.0041 Score=48.94 Aligned_cols=24 Identities=17% Similarity=0.462 Sum_probs=21.3
Q ss_pred cceEEECCCCCChHHHHHHHHhhc
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l 55 (236)
..++|+|++|+|||||+..+.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 349999999999999999998764
No 360
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.39 E-value=0.0021 Score=56.35 Aligned_cols=25 Identities=24% Similarity=0.598 Sum_probs=22.4
Q ss_pred cceEEECCCCCChHHHHHHHHhhcC
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~ 56 (236)
+-++|+||+|||||+|+..||..++
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCccCHHHHHHHHHHhCC
Confidence 3478899999999999999999875
No 361
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.39 E-value=0.0014 Score=51.75 Aligned_cols=21 Identities=24% Similarity=0.605 Sum_probs=19.6
Q ss_pred eEEECCCCCChHHHHHHHHhh
Q 048723 34 YLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~ 54 (236)
++|+|+||+|||||++.+++.
T Consensus 5 v~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999999874
No 362
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.37 E-value=0.0027 Score=54.68 Aligned_cols=26 Identities=38% Similarity=0.330 Sum_probs=22.8
Q ss_pred cceEEECCCCCChHHHHHHHHhhcCC
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
+.++|+||+|+|||+|++.+++.+..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~ 56 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNL 56 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCC
Confidence 45889999999999999999988753
No 363
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.35 E-value=0.0019 Score=50.61 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=20.1
Q ss_pred ceEEECCCCCChHHHHHHHHhh
Q 048723 33 GYLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~ 54 (236)
.++|+|++|+|||||++.|++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999874
No 364
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.34 E-value=0.0011 Score=64.77 Aligned_cols=32 Identities=28% Similarity=0.289 Sum_probs=25.6
Q ss_pred HhhhCCCCCcceEEECCCCCChHHHHHHHHhhc
Q 048723 23 CAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 23 ~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l 55 (236)
+.++++. ..-++|+||||+||||++++|++..
T Consensus 569 l~disl~-g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 569 PNDLEMA-HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp CEEEEES-SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eeeccCC-CcEEEEECCCCCChHHHHHHHHhhh
Confidence 3455555 4448899999999999999999875
No 365
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.29 E-value=0.0026 Score=52.42 Aligned_cols=25 Identities=40% Similarity=0.420 Sum_probs=22.4
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
++|.||+||||||+++.|+..+...
T Consensus 9 i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 9 VTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 7789999999999999999988654
No 366
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.28 E-value=0.0014 Score=61.21 Aligned_cols=25 Identities=24% Similarity=0.550 Sum_probs=22.6
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
++|+|+|||||||+++.|+..++..
T Consensus 38 IvlvGlpGSGKSTia~~La~~L~~~ 62 (520)
T 2axn_A 38 IVMVGLPARGKTYISKKLTRYLNWI 62 (520)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhc
Confidence 7889999999999999999988644
No 367
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.28 E-value=0.0068 Score=48.93 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=22.1
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCC
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
.++|+|++|+|||||+..|+..+..
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~~~ 56 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERIGN 56 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 4899999999999999999988643
No 368
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.28 E-value=0.0025 Score=48.34 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.5
Q ss_pred ceEEECCCCCChHHHHHHHHhhc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l 55 (236)
.++++|++|+|||||+..+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998754
No 369
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.27 E-value=0.0024 Score=48.66 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.4
Q ss_pred ceEEECCCCCChHHHHHHHHhhc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l 55 (236)
.++|+|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999998753
No 370
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.27 E-value=0.00082 Score=66.85 Aligned_cols=34 Identities=21% Similarity=0.180 Sum_probs=27.1
Q ss_pred hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhh
Q 048723 21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~ 54 (236)
.+..++++....| ++|+||||+||||++++|+..
T Consensus 661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred eecccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 3455677776665 889999999999999998753
No 371
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.27 E-value=0.0024 Score=56.14 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=22.1
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCC
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
-++|+||+|||||+|+..||..++.
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~ 29 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNG 29 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTE
T ss_pred EEEEECCCcCCHHHHHHHHHHhCcc
Confidence 3788999999999999999998753
No 372
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.26 E-value=0.0027 Score=55.35 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=20.5
Q ss_pred eEEECCCCCChHHHHHHHHhhc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l 55 (236)
++|+||+|+||||+++.|.+..
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEecCCCCHHHHHHHHHhhc
Confidence 7899999999999999999875
No 373
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.25 E-value=0.00047 Score=60.29 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=19.5
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
+.|+||||+|||||+++|++...+.
T Consensus 176 ~~lvG~sG~GKSTLln~L~g~~~~~ 200 (307)
T 1t9h_A 176 TVFAGQSGVGKSSLLNAISPELGLR 200 (307)
T ss_dssp EEEEESHHHHHHHHHHHHCC-----
T ss_pred EEEECCCCCCHHHHHHHhccccccc
Confidence 8899999999999999999987665
No 374
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.24 E-value=0.0027 Score=48.20 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.1
Q ss_pred ceEEECCCCCChHHHHHHHHhhc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l 55 (236)
.++|+|++|+|||||+..+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999999988643
No 375
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.23 E-value=0.0034 Score=58.53 Aligned_cols=25 Identities=8% Similarity=0.034 Sum_probs=23.2
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCC
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
.+.|.|++||||||++++|+..++.
T Consensus 397 ~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 397 SIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred EEEecccCCCCHHHHHHHHHHHHHH
Confidence 3889999999999999999999985
No 376
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.22 E-value=0.0028 Score=54.52 Aligned_cols=24 Identities=33% Similarity=0.306 Sum_probs=21.6
Q ss_pred cceEEECCCCCChHHHHHHHHhhc
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l 55 (236)
+.++|+||+|+|||+|++.+++..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc
Confidence 458999999999999999999875
No 377
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.19 E-value=0.0018 Score=56.16 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=20.0
Q ss_pred eEEECCCCCChHHHHHHHHhhc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l 55 (236)
++|+||||+|||+|+..++...
T Consensus 101 ~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 101 TEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8899999999999999999753
No 378
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.17 E-value=0.0023 Score=50.01 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=20.3
Q ss_pred eEEECCCCCChHHHHHHHHhhc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l 55 (236)
++|+|+||+|||||++.|++..
T Consensus 7 i~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 7 VVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999753
No 379
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.16 E-value=0.0029 Score=51.03 Aligned_cols=23 Identities=17% Similarity=0.495 Sum_probs=21.0
Q ss_pred ceEEECCCCCChHHHHHHHHhhc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l 55 (236)
.++|+|++|+|||||+..|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999865
No 380
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.15 E-value=0.0011 Score=57.26 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=18.2
Q ss_pred eEEECCCCCChHHHHHHHHhhcC
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~ 56 (236)
+.|.||+||||||+++.|+..++
T Consensus 8 IgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 8 ISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp EEEESCC---CCTHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 78899999999999999999765
No 381
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=96.15 E-value=0.0063 Score=54.48 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=21.9
Q ss_pred cceEEECCCCCChHHHHHHHHhhcC
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~ 56 (236)
..++|+|++|||||+++++|.....
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~ 185 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSD 185 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcC
Confidence 3489999999999999999988764
No 382
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.15 E-value=0.0014 Score=65.23 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=23.8
Q ss_pred HhhhCCCCCcc--eEEECCCCCChHHHHHHHH
Q 048723 23 CAKIGKAWKRG--YLLYGPPGTGKSTMIAAMA 52 (236)
Q Consensus 23 ~~~~~~~~~rg--~lL~GPpGtGKTtlakaia 52 (236)
..++++....| ++|+||||+||||++++|+
T Consensus 652 ~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 652 PNDVYFEKDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp CEEEEEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred cccceeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence 34555666555 8899999999999999994
No 383
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.14 E-value=0.0031 Score=48.06 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.3
Q ss_pred ceEEECCCCCChHHHHHHHHhhc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l 55 (236)
.++|+|++|+|||||+..+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999998654
No 384
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.14 E-value=0.0032 Score=51.44 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=18.4
Q ss_pred eEEECCCCCChHHHHHHHHhhc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l 55 (236)
++++||||||||+++..++...
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 7899999999999988865443
No 385
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.13 E-value=0.0032 Score=47.79 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.4
Q ss_pred ceEEECCCCCChHHHHHHHHhhc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l 55 (236)
.++|+|++|+|||||+..+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998753
No 386
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.13 E-value=0.0028 Score=48.72 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=19.9
Q ss_pred ceEEECCCCCChHHHHHHHHhhc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l 55 (236)
.++|+|+||+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 38999999999999999998653
No 387
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.13 E-value=0.0028 Score=47.95 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.4
Q ss_pred ceEEECCCCCChHHHHHHHHhhc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l 55 (236)
.++++|++|+|||||+..+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999998753
No 388
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.12 E-value=0.0033 Score=48.00 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=20.3
Q ss_pred eEEECCCCCChHHHHHHHHhhc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l 55 (236)
++|+|++|+|||||++.+.+..
T Consensus 9 i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8999999999999999998764
No 389
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.11 E-value=0.0033 Score=48.51 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.9
Q ss_pred eEEECCCCCChHHHHHHHHhhc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l 55 (236)
++|+|++|+|||||+..+.+..
T Consensus 10 i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999998643
No 390
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.11 E-value=0.0044 Score=48.56 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=20.3
Q ss_pred ceEEECCCCCChHHHHHHHHhh
Q 048723 33 GYLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~ 54 (236)
.++|+|++|+|||||+.++.+.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999876
No 391
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.11 E-value=0.0032 Score=48.10 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=19.5
Q ss_pred eEEECCCCCChHHHHHHHHhh
Q 048723 34 YLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~ 54 (236)
++|+|++|+|||||+..+.+.
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999874
No 392
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=96.08 E-value=0.0029 Score=52.63 Aligned_cols=27 Identities=15% Similarity=0.081 Sum_probs=24.9
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNYDL 59 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~~~ 59 (236)
-+.+.|++||||||+++.||..++.++
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~ 42 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHF 42 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcE
Confidence 378899999999999999999999886
No 393
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.08 E-value=0.0035 Score=47.92 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.4
Q ss_pred ceEEECCCCCChHHHHHHHHhhc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l 55 (236)
.++++|++|+|||||+..+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999998653
No 394
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.07 E-value=0.0036 Score=48.37 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.3
Q ss_pred ceEEECCCCCChHHHHHHHHhhc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l 55 (236)
.++|+|++|+|||||+..+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999998753
No 395
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.06 E-value=0.0033 Score=52.14 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=21.4
Q ss_pred eEEECCCCCChHHHHHHHHhhcC
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~ 56 (236)
++|.|++||||||+++.|+..+.
T Consensus 5 i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 5 LSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999884
No 396
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.05 E-value=0.0032 Score=48.10 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.2
Q ss_pred ceEEECCCCCChHHHHHHHHhhc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l 55 (236)
.++|+|++|+|||||+..+.+.-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 38999999999999999998643
No 397
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.04 E-value=0.0033 Score=48.15 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.0
Q ss_pred eEEECCCCCChHHHHHHHHhh
Q 048723 34 YLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~ 54 (236)
++|+|++|+|||||+..+.+.
T Consensus 5 i~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999753
No 398
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.03 E-value=0.0029 Score=52.85 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=18.2
Q ss_pred eEEECCCCCChHHHHHHHHhhcC
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~ 56 (236)
++|.||+||||||+++.|+..+.
T Consensus 28 I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 28 ITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp EEEECCC---CHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 77899999999999999999884
No 399
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.02 E-value=0.0018 Score=54.53 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=21.2
Q ss_pred eEEECCCCCChHHHHHHHHhhcC
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~ 56 (236)
++|.|++||||||+++.|+..+.
T Consensus 27 I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 27 ISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEECSTTSSHHHHHTTTGGGCT
T ss_pred EEEECCCCCCHHHHHHHHHHhcC
Confidence 78899999999999999999873
No 400
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.02 E-value=0.0039 Score=47.44 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.9
Q ss_pred ceEEECCCCCChHHHHHHHHhh
Q 048723 33 GYLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~ 54 (236)
.++|+|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999874
No 401
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.02 E-value=0.005 Score=47.49 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.8
Q ss_pred ceEEECCCCCChHHHHHHHHhh
Q 048723 33 GYLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~ 54 (236)
.++|+|++|+|||||+..+.+.
T Consensus 10 ~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 10 VVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp EEEEESCTTTTHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999864
No 402
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.01 E-value=0.0039 Score=47.47 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=19.5
Q ss_pred eEEECCCCCChHHHHHHHHhh
Q 048723 34 YLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~ 54 (236)
++|+|++|+|||||+..+.+.
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999864
No 403
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.99 E-value=0.0036 Score=54.06 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=19.9
Q ss_pred eEEECCCCCChHHHHHHHHhh
Q 048723 34 YLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~ 54 (236)
++|+|+||+|||||+.+|.+.
T Consensus 11 VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 11 IAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEECSSSSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 889999999999999999975
No 404
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.99 E-value=0.0041 Score=48.03 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=19.9
Q ss_pred eEEECCCCCChHHHHHHHHhhc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l 55 (236)
++|+|++|+|||||+..+.+..
T Consensus 9 i~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEECcCCCCHHHHHHHHHhCc
Confidence 8999999999999999998643
No 405
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.98 E-value=0.0065 Score=56.54 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=21.6
Q ss_pred ceEEECCCCCChHHHHHHHHhhcC
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~ 56 (236)
.++|+|+||+||||++..||..+.
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999998764
No 406
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=95.98 E-value=0.0045 Score=43.05 Aligned_cols=66 Identities=9% Similarity=-0.006 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHccc---ccc-cChHHHHHHHHHHHHHHH
Q 048723 95 CFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPK---SDE-EDADSCLKNLIEALKVAK 160 (236)
Q Consensus 95 ~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~---~~~-~~~~~~~~~~~~~L~~~~ 160 (236)
+.+.|..|++.|+.........++..++. +.||||+||..+|..+ +.. ....++.+++..++++.+
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVI 72 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHc
Confidence 56789999999987654333334566666 7799999999888762 222 234577778877777654
No 407
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.98 E-value=0.004 Score=48.53 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=20.0
Q ss_pred ceEEECCCCCChHHHHHHHHhh
Q 048723 33 GYLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~ 54 (236)
.++|+|++|+|||||+..+.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999864
No 408
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.97 E-value=0.0037 Score=59.70 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=21.1
Q ss_pred eEEECCCCCChHHHHHHHHhhc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l 55 (236)
++|+|+|||||||+++.|+..+
T Consensus 55 IvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 55 VWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999988
No 409
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.97 E-value=0.004 Score=56.87 Aligned_cols=46 Identities=15% Similarity=0.343 Sum_probs=30.4
Q ss_pred HhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEee
Q 048723 23 CAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTT 69 (236)
Q Consensus 23 ~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~tt 69 (236)
+.++...+++| ++|.||||+|||||+..|+...... .+..+++++.
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~ 240 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSL 240 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEES
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEEC
Confidence 33333334555 8899999999999999999876432 1233445544
No 410
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.96 E-value=0.0019 Score=57.39 Aligned_cols=30 Identities=23% Similarity=0.428 Sum_probs=24.4
Q ss_pred hhhCCCCCcc-eEEECCCCCChHHHHHHHHh
Q 048723 24 AKIGKAWKRG-YLLYGPPGTGKSTMIAAMAN 53 (236)
Q Consensus 24 ~~~~~~~~rg-~lL~GPpGtGKTtlakaia~ 53 (236)
.+..+.+.+| .+|+||+|+|||+++.||.-
T Consensus 17 ~~~~i~f~~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 17 VNSRIKFEKGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEECCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cceEEecCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4444556667 78999999999999999986
No 411
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.95 E-value=0.0035 Score=50.32 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=17.3
Q ss_pred eEEECCCCCChHHHHHHHHhh
Q 048723 34 YLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~ 54 (236)
++++||||+||||++..++..
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 778999999999998555544
No 412
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.93 E-value=0.0041 Score=51.50 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=22.4
Q ss_pred eEEECCCCCChHHHHHHHHhhcCC
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
++|.||+|+||||+++.|+..+..
T Consensus 8 i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 8 ILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHHHHhcc
Confidence 778999999999999999999875
No 413
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.93 E-value=0.0036 Score=56.72 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.3
Q ss_pred ceEEECCCCCChHHHHHHHHhhcCC
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
-++|.||+|||||+|+..||..++.
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~~ 28 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFNG 28 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHTE
T ss_pred EEEEECcchhhHHHHHHHHHHHCCC
Confidence 3788999999999999999998764
No 414
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.93 E-value=0.0045 Score=48.20 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=20.1
Q ss_pred eEEECCCCCChHHHHHHHHhhc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l 55 (236)
++|+|++|+|||||+..|.+..
T Consensus 7 i~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 8999999999999999998754
No 415
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.92 E-value=0.0038 Score=57.29 Aligned_cols=25 Identities=24% Similarity=0.563 Sum_probs=22.5
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
++|+|.|||||||+++.|+..++..
T Consensus 42 IvlvGlpGsGKSTia~~La~~l~~~ 66 (469)
T 1bif_A 42 IVMVGLPARGKTYISKKLTRYLNFI 66 (469)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcc
Confidence 8899999999999999999987644
No 416
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.92 E-value=0.003 Score=49.77 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.5
Q ss_pred cceEEECCCCCChHHHHHHHHhh
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~ 54 (236)
..++|+|++|+|||||+..|.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 34999999999999999999865
No 417
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.92 E-value=0.0055 Score=46.86 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.8
Q ss_pred ceEEECCCCCChHHHHHHHHhh
Q 048723 33 GYLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~ 54 (236)
.++|+|++|+|||||+..+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999764
No 418
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.91 E-value=0.0046 Score=47.04 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=19.2
Q ss_pred eEEECCCCCChHHHHHHHHhh
Q 048723 34 YLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~ 54 (236)
++|+|++|+|||||+..+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999764
No 419
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.91 E-value=0.005 Score=56.19 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=21.9
Q ss_pred ceEEECCCCCChHHHHHHHHhhcC
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~ 56 (236)
.++|+||||+||||++..||..+.
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999875
No 420
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.87 E-value=0.0036 Score=52.90 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.7
Q ss_pred ceEEECCCCCChHHHHHHHHhhc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l 55 (236)
.++|+|+||+|||||+.+|.+..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998763
No 421
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.86 E-value=0.0042 Score=47.79 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=19.4
Q ss_pred eEEECCCCCChHHHHHHHHhh
Q 048723 34 YLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~ 54 (236)
++|+|++|+|||||+..+.+.
T Consensus 17 i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999864
No 422
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.86 E-value=0.0044 Score=51.12 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.2
Q ss_pred ceEEECCCCCChHHHHHHHHhhcC
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l~ 56 (236)
.++|+|++|+|||||+.+|.+...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 389999999999999999998653
No 423
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.86 E-value=0.0049 Score=48.56 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.5
Q ss_pred ceEEECCCCCChHHHHHHHHhhc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l 55 (236)
.++|+|++|+|||||+..+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 38999999999999999998753
No 424
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.86 E-value=0.005 Score=47.64 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=19.6
Q ss_pred eEEECCCCCChHHHHHHHHhh
Q 048723 34 YLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~ 54 (236)
++|+|++|+|||||+..+.+.
T Consensus 15 i~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 899999999999999999875
No 425
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.85 E-value=0.005 Score=47.38 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.6
Q ss_pred ceEEECCCCCChHHHHHHHHhhc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l 55 (236)
.++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 49999999999999999998754
No 426
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.85 E-value=0.0039 Score=47.57 Aligned_cols=21 Identities=38% Similarity=0.695 Sum_probs=19.0
Q ss_pred eEEECCCCCChHHHHHHHHhh
Q 048723 34 YLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~ 54 (236)
++|+|+||+|||||++.+.+.
T Consensus 5 i~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHcCc
Confidence 899999999999999998653
No 427
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=95.84 E-value=0.0013 Score=59.74 Aligned_cols=30 Identities=30% Similarity=0.334 Sum_probs=24.4
Q ss_pred hhCCCCCcc--eEEECCCCCChHHHHHHHHhh
Q 048723 25 KIGKAWKRG--YLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 25 ~~~~~~~rg--~lL~GPpGtGKTtlakaia~~ 54 (236)
++++.++.+ +.|+||||+|||||+++|++.
T Consensus 149 ~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 149 RLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred eeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 344445555 889999999999999999987
No 428
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.84 E-value=0.0045 Score=47.72 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=19.8
Q ss_pred eEEECCCCCChHHHHHHHHhh
Q 048723 34 YLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~ 54 (236)
++|+|++|+|||||++.+.+.
T Consensus 12 i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 12 LVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999999876
No 429
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.83 E-value=0.0051 Score=47.67 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.4
Q ss_pred ceEEECCCCCChHHHHHHHHhhc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l 55 (236)
.++|+|++|+|||||+..+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 38999999999999999998643
No 430
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.83 E-value=0.0051 Score=48.23 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.1
Q ss_pred eEEECCCCCChHHHHHHHHhhc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l 55 (236)
++|+|++|+|||||+..|.+..
T Consensus 24 i~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8999999999999999998753
No 431
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.82 E-value=0.0047 Score=60.64 Aligned_cols=38 Identities=29% Similarity=0.366 Sum_probs=24.4
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecC
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNY 71 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~ 71 (236)
+++.||||||||+++..+...+-..-...+++.+.||.
T Consensus 378 ~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~ 415 (802)
T 2xzl_A 378 SLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNV 415 (802)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHH
Confidence 68899999999988776665442100124566666654
No 432
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.82 E-value=0.0044 Score=56.42 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=27.6
Q ss_pred CCCCcceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEee
Q 048723 28 KAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTT 69 (236)
Q Consensus 28 ~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~tt 69 (236)
+....-++|.|+||+|||+|+..||...... .+..+++++.
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~sl 237 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSL 237 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEES
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEEC
Confidence 4433338899999999999999998865421 1233444554
No 433
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.81 E-value=0.0057 Score=47.84 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.8
Q ss_pred eEEECCCCCChHHHHHHHHhhcC
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~ 56 (236)
++|+|++|+|||||++.+.+...
T Consensus 17 i~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHHhhcc
Confidence 89999999999999999987654
No 434
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.79 E-value=0.005 Score=47.49 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=19.7
Q ss_pred ceEEECCCCCChHHHHHHHHhh
Q 048723 33 GYLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~ 54 (236)
.++|+|++|+|||||+..+.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999998754
No 435
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.77 E-value=0.0056 Score=47.30 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.4
Q ss_pred ceEEECCCCCChHHHHHHHHhhc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l 55 (236)
.++|+|++|+|||||+..+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 38999999999999999998754
No 436
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.77 E-value=0.0063 Score=53.73 Aligned_cols=22 Identities=45% Similarity=0.600 Sum_probs=20.7
Q ss_pred eEEECCCCCChHHHHHHHHhhc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l 55 (236)
++|+|+||+||||++..|+..+
T Consensus 82 I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 82 VGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8899999999999999999876
No 437
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.77 E-value=0.0026 Score=64.00 Aligned_cols=34 Identities=26% Similarity=0.274 Sum_probs=26.2
Q ss_pred hHHhhhCCCCCc-------c--eEEECCCCCChHHHHHHHHhhc
Q 048723 21 EYCAKIGKAWKR-------G--YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 21 ~~~~~~~~~~~r-------g--~lL~GPpGtGKTtlakaia~~l 55 (236)
.++.++++.... | ++|+||||+||||++++| +.+
T Consensus 770 ~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 770 FIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp CCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred eEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHH
Confidence 456666666543 3 889999999999999999 544
No 438
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.75 E-value=0.0049 Score=47.98 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.4
Q ss_pred ceEEECCCCCChHHHHHHHHhhc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l 55 (236)
.++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999999998653
No 439
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.75 E-value=0.0058 Score=50.84 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=22.0
Q ss_pred eEEECCCCCChHHHHHHHHhhcCC
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
+.|.|++||||||+++.|+..+..
T Consensus 24 i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 24 ITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhh
Confidence 778899999999999999998865
No 440
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.75 E-value=0.006 Score=53.94 Aligned_cols=38 Identities=21% Similarity=0.369 Sum_probs=27.6
Q ss_pred CCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEee
Q 048723 30 WKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTT 69 (236)
Q Consensus 30 ~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~tt 69 (236)
+.+| ++|.|+||+|||+|+..||...... +..+++++.
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSl 82 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSL 82 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeC
Confidence 4445 8899999999999999998876432 344445554
No 441
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.73 E-value=0.0063 Score=48.19 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=20.2
Q ss_pred ceEEECCCCCChHHHHHHHHhh
Q 048723 33 GYLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~ 54 (236)
.++|+|++|+|||||+..+.+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4999999999999999999875
No 442
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.73 E-value=0.0073 Score=53.79 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=23.1
Q ss_pred CcceEEECCCCCChHHHHHHHHhhcCC
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
...++++||+|+||||+++.|+..+..
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~ 61 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYM 61 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHH
Confidence 345899999999999999999987643
No 443
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.73 E-value=0.0051 Score=48.22 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=19.7
Q ss_pred eEEECCCCCChHHHHHHHHhh
Q 048723 34 YLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~ 54 (236)
++|+|++|+|||||++.+.+.
T Consensus 10 i~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999999875
No 444
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.73 E-value=0.007 Score=50.60 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.9
Q ss_pred eEEECCCCCChHHHHHHHHhhcC
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~ 56 (236)
+++.|+||+||||++-.+|..+.
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 88899999999999999998874
No 445
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.72 E-value=0.0042 Score=48.46 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.5
Q ss_pred eEEECCCCCChHHHHHHHHhh
Q 048723 34 YLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~ 54 (236)
++|+|++|+|||||+..+.+.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 789999999999999999875
No 446
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.71 E-value=0.0071 Score=47.46 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.8
Q ss_pred ceEEECCCCCChHHHHHHHHhh
Q 048723 33 GYLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~ 54 (236)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3999999999999999998764
No 447
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.71 E-value=0.0061 Score=48.45 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=20.8
Q ss_pred cceEEECCCCCChHHHHHHHHhhc
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l 55 (236)
..++|+|++|+|||||+..+.+..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 348999999999999999998653
No 448
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.70 E-value=0.0049 Score=51.70 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.3
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
++|.||+||||||+++.|+..+...
T Consensus 30 i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 30 IVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp EEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc
Confidence 7789999999999999999988644
No 449
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.70 E-value=0.0062 Score=47.22 Aligned_cols=21 Identities=14% Similarity=0.339 Sum_probs=19.3
Q ss_pred eEEECCCCCChHHHHHHHHhh
Q 048723 34 YLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~ 54 (236)
++|+|++|+|||||+..+.+.
T Consensus 8 i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 8 CVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999864
No 450
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.69 E-value=0.0063 Score=47.33 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=19.6
Q ss_pred eEEECCCCCChHHHHHHHHhh
Q 048723 34 YLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~ 54 (236)
++|+|++|+|||||+..+.+.
T Consensus 21 i~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999999865
No 451
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.69 E-value=0.0063 Score=47.83 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.5
Q ss_pred ceEEECCCCCChHHHHHHHHhhc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l 55 (236)
.++|+|++|+|||||+..+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999999998754
No 452
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.68 E-value=0.0063 Score=47.79 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.5
Q ss_pred ceEEECCCCCChHHHHHHHHhhc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l 55 (236)
.++|+|++|+|||||+..+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999998754
No 453
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.67 E-value=0.006 Score=47.71 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.7
Q ss_pred ceEEECCCCCChHHHHHHHHhhc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l 55 (236)
.++|+|++|+|||||+..+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 49999999999999999998764
No 454
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.65 E-value=0.0065 Score=48.10 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.3
Q ss_pred ceEEECCCCCChHHHHHHHHhhc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l 55 (236)
.++|+|++|+|||||+..+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 38999999999999999998653
No 455
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.64 E-value=0.0068 Score=47.85 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=19.4
Q ss_pred eEEECCCCCChHHHHHHHHhhc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l 55 (236)
++|+|++|+|||||+..+.+..
T Consensus 23 i~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999998777643
No 456
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.63 E-value=0.0068 Score=48.10 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.5
Q ss_pred ceEEECCCCCChHHHHHHHHhhc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l 55 (236)
.++|+|++|+|||||+..+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999998754
No 457
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.61 E-value=0.0069 Score=47.41 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=20.5
Q ss_pred ceEEECCCCCChHHHHHHHHhhc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l 55 (236)
.++|+|++|+|||||+..+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999999998753
No 458
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.61 E-value=0.011 Score=52.53 Aligned_cols=22 Identities=14% Similarity=0.365 Sum_probs=19.8
Q ss_pred eEEECCCCCChHHHHHHHHhhc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l 55 (236)
++|+|+||+|||||+++|++..
T Consensus 182 V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 7899999999999999999764
No 459
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.60 E-value=0.0071 Score=46.79 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=19.9
Q ss_pred ceEEECCCCCChHHHHHHHHhh
Q 048723 33 GYLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~ 54 (236)
.++|+|++|+|||||+..+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999864
No 460
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.60 E-value=0.0066 Score=54.74 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=19.8
Q ss_pred eEEECCCCCChHHHHHHHHhh
Q 048723 34 YLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~ 54 (236)
+.|+|+||+|||||.++|.+.
T Consensus 23 vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 23 TGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp EEEEECSSSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 889999999999999999983
No 461
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.60 E-value=0.012 Score=47.67 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=21.8
Q ss_pred cceEEECCCCCChHHHHHHHHhhcC
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~ 56 (236)
+.++|+|++|+|||||+..++..+.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3488999999999999999998763
No 462
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.60 E-value=0.0066 Score=48.19 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=20.8
Q ss_pred cceEEECCCCCChHHHHHHHHhhc
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l 55 (236)
..++|+|++|+|||||+..+.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 348999999999999999998753
No 463
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=95.58 E-value=0.0022 Score=45.51 Aligned_cols=44 Identities=9% Similarity=-0.139 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723 95 CFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMP 138 (236)
Q Consensus 95 ~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~ 138 (236)
+.+.|..|++.|+.........++..++. +.||||+||..+|..
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~e 46 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTE 46 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHH
Confidence 34678899999987554433334566666 789999999877774
No 464
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=95.58 E-value=0.0011 Score=65.22 Aligned_cols=34 Identities=24% Similarity=0.422 Sum_probs=28.8
Q ss_pred HHhhhCCCCCcc--eEEECCCCCChHHHHHH-HHhhc
Q 048723 22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAA-MANFL 55 (236)
Q Consensus 22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlaka-ia~~l 55 (236)
.++++++.+++| +.|+|++|+|||||++. |++.+
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l 548 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL 548 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence 477888888988 88999999999999996 66544
No 465
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.58 E-value=0.0065 Score=48.38 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=20.7
Q ss_pred ceEEECCCCCChHHHHHHHHhhc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l 55 (236)
.++|+|++|+|||||+..+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 38999999999999999998754
No 466
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.56 E-value=0.0076 Score=47.34 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=19.8
Q ss_pred ceEEECCCCCChHHHHHHHHhh
Q 048723 33 GYLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~ 54 (236)
.++|+|++|+|||||+..+.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999864
No 467
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.55 E-value=0.0075 Score=47.47 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.9
Q ss_pred eEEECCCCCChHHHHHHHHhhc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l 55 (236)
++|+|++|+|||||+..+.+..
T Consensus 25 i~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 25 LTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999998643
No 468
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.55 E-value=0.0068 Score=47.03 Aligned_cols=22 Identities=27% Similarity=0.452 Sum_probs=19.3
Q ss_pred cceEEECCCCCChHHHHHHHHh
Q 048723 32 RGYLLYGPPGTGKSTMIAAMAN 53 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~ 53 (236)
..++|+|++|+|||||+..+.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3499999999999999999873
No 469
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.54 E-value=0.0077 Score=47.46 Aligned_cols=22 Identities=27% Similarity=0.605 Sum_probs=20.0
Q ss_pred eEEECCCCCChHHHHHHHHhhc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l 55 (236)
++|+|++|+|||||+..+.+..
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999998653
No 470
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.53 E-value=0.0068 Score=47.91 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.4
Q ss_pred ceEEECCCCCChHHHHHHHHhhc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l 55 (236)
.++|+|++|+|||||+..+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 38999999999999999998654
No 471
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.51 E-value=0.0081 Score=47.38 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.8
Q ss_pred eEEECCCCCChHHHHHHHHhhc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l 55 (236)
++|+|++|+|||||+..+.+..
T Consensus 24 i~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 24 LAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCcHHHHHHHHHhCC
Confidence 8999999999999999988643
No 472
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.51 E-value=0.0069 Score=47.75 Aligned_cols=22 Identities=23% Similarity=0.387 Sum_probs=20.3
Q ss_pred eEEECCCCCChHHHHHHHHhhc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l 55 (236)
++|+|++|+|||||+..+.+..
T Consensus 26 i~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCcCHHHHHHHHhcCC
Confidence 8999999999999999998764
No 473
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.51 E-value=0.0066 Score=57.35 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=22.0
Q ss_pred eEEECCCCCChHHHHHHHHhhcCC
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNY 57 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~ 57 (236)
++|.|+|||||||+++.|+..++.
T Consensus 399 I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 399 IFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEeecCCCCCHHHHHHHHHHHhcc
Confidence 788999999999999999998863
No 474
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.50 E-value=0.0062 Score=47.56 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.4
Q ss_pred ceEEECCCCCChHHHHHHHHhhc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l 55 (236)
.++++|++|+|||||+..+.+..
T Consensus 20 ~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 20 RLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999998654
No 475
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.50 E-value=0.0099 Score=54.22 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=21.8
Q ss_pred cceEEECCCCCChHHHHHHHHhhcC
Q 048723 32 RGYLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 32 rg~lL~GPpGtGKTtlakaia~~l~ 56 (236)
+.++++|++|+||||++-.||..+.
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3488899999999999999998774
No 476
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.50 E-value=0.0058 Score=47.30 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=19.7
Q ss_pred eEEECCCCCChHHHHHHHHhh
Q 048723 34 YLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~ 54 (236)
++|+|++|+|||||+..+.+.
T Consensus 10 i~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 10 LGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEECCGGGCHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999999875
No 477
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.49 E-value=0.008 Score=47.90 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.9
Q ss_pred ceEEECCCCCChHHHHHHHHhh
Q 048723 33 GYLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~ 54 (236)
.++|+|++|+|||||+..+.+.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 478
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.49 E-value=0.0071 Score=46.91 Aligned_cols=22 Identities=18% Similarity=0.227 Sum_probs=19.6
Q ss_pred ceEEECCCCCChHHHHHHHHhh
Q 048723 33 GYLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~ 54 (236)
.++|+|++|+|||||+..+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3899999999999999999853
No 479
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.49 E-value=0.007 Score=52.40 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=22.6
Q ss_pred CCCcc-eEEECCCCCChHHHHHHHHhhc
Q 048723 29 AWKRG-YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 29 ~~~rg-~lL~GPpGtGKTtlakaia~~l 55 (236)
+++.| +.|+|+||+|||||+.+|.+.-
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44556 8899999999999999998753
No 480
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.49 E-value=0.0081 Score=47.36 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=20.3
Q ss_pred eEEECCCCCChHHHHHHHHhhc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l 55 (236)
++|+|++|+|||||++.+.+..
T Consensus 26 i~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 26 IVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999998754
No 481
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.49 E-value=0.014 Score=48.41 Aligned_cols=23 Identities=26% Similarity=0.661 Sum_probs=21.3
Q ss_pred eEEECCCCCChHHHHHHHHhhcC
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~ 56 (236)
+++.|++|+||||++..|+..+.
T Consensus 17 ~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 17 VVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH
Confidence 77899999999999999998876
No 482
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.48 E-value=0.007 Score=48.21 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=20.4
Q ss_pred ceEEECCCCCChHHHHHHHHhhc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l 55 (236)
.++|+|++|+|||||+..+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998643
No 483
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.48 E-value=0.0068 Score=49.94 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=22.3
Q ss_pred eEEECCCCCChHHHHHHHHhhcCCc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFLNYD 58 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l~~~ 58 (236)
++|.||+||||||.++.|+..+...
T Consensus 6 i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 6 IVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 7789999999999999999988544
No 484
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.47 E-value=0.0074 Score=47.51 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=19.6
Q ss_pred eEEECCCCCChHHHHHHHHhh
Q 048723 34 YLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~ 54 (236)
++|+|++|+|||||+..+.+.
T Consensus 11 i~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 11 VVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCcHHHHHHHHHcC
Confidence 899999999999999999874
No 485
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.46 E-value=0.0096 Score=47.22 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=18.9
Q ss_pred ceEEECCCCCChHHHHHHHHh
Q 048723 33 GYLLYGPPGTGKSTMIAAMAN 53 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~ 53 (236)
.++|+|++|+|||||+..+.+
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 399999999999999999864
No 486
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.46 E-value=0.0075 Score=57.25 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=19.6
Q ss_pred ceEEECCCCCChHHHHHHHHhhc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l 55 (236)
-+++.|||||||||++..+...+
T Consensus 166 ~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 166 ISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHH
Confidence 38889999999999988877665
No 487
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.44 E-value=0.0079 Score=54.97 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=28.7
Q ss_pred CCCCCcceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEee
Q 048723 27 GKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTT 69 (236)
Q Consensus 27 ~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~tt 69 (236)
|+....-++|.|+||+|||+|+..||...... +..+++++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEEC
Confidence 34433338899999999999999998876433 344555554
No 488
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=95.44 E-value=0.0014 Score=60.85 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=30.2
Q ss_pred ChhHHhhhCCCCCcc-eEEECCCCCChHHHHHHHHhhcC
Q 048723 19 GKEYCAKIGKAWKRG-YLLYGPPGTGKSTMIAAMANFLN 56 (236)
Q Consensus 19 ~~~~~~~~~~~~~rg-~lL~GPpGtGKTtlakaia~~l~ 56 (236)
+...|+++.+.+.+| .+|+|++|+|||+|+.+|.-.++
T Consensus 47 nf~~~~~~~l~f~~g~n~i~G~NGaGKS~lleAl~~llg 85 (517)
T 4ad8_A 47 NLATITQLELELGGGFCAFTGETGAGKSIIVDALGLLLG 85 (517)
T ss_dssp SBTTBSCEEEECCCSEEEEEESHHHHHHHHTHHHHHHTC
T ss_pred cccceeeEEEecCCCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 344556666777777 67899999999999999987754
No 489
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=95.41 E-value=0.0024 Score=63.77 Aligned_cols=30 Identities=27% Similarity=0.421 Sum_probs=26.4
Q ss_pred HHhhhCCCCCcc--eEEECCCCCChHHHHHHH
Q 048723 22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAM 51 (236)
Q Consensus 22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakai 51 (236)
.++++++.++.| +.|+||+|+|||||++.|
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTT
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHH
Confidence 467788888888 889999999999999985
No 490
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.39 E-value=0.025 Score=60.38 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=30.4
Q ss_pred CCCCcceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723 28 KAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN 70 (236)
Q Consensus 28 ~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN 70 (236)
++..+.++|+||||+|||+|+..++...... +..++++++.
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~--G~~vlyis~E 420 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAE 420 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTT
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcC
Confidence 5555558999999999999999998876543 3455555554
No 491
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.39 E-value=0.01 Score=54.73 Aligned_cols=42 Identities=17% Similarity=0.037 Sum_probs=28.9
Q ss_pred CCCCCcceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEee
Q 048723 27 GKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTT 69 (236)
Q Consensus 27 ~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~tt 69 (236)
|+....-++|.|+||+|||+|+..+|...... .+..+++++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEec
Confidence 34444448899999999999999999876543 1234455554
No 492
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.38 E-value=0.0087 Score=49.77 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=18.8
Q ss_pred eEEECCCCCChHHHHHHHHhhc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l 55 (236)
++++||+|+||||++..++..+
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6779999999999888777665
No 493
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=95.37 E-value=0.008 Score=52.98 Aligned_cols=31 Identities=13% Similarity=0.246 Sum_probs=22.7
Q ss_pred HhhhCCCCCcceEEECCCCCChHHHHHHHHhh
Q 048723 23 CAKIGKAWKRGYLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 23 ~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~ 54 (236)
+.++++.++ -++|+|++|+|||||+.+|.+.
T Consensus 27 l~~i~~~lp-~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 27 LPTLWDSLP-AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp C----CCCC-EEEEECBTTSSHHHHHHHHHTS
T ss_pred cccccccCC-EEEEECCCCCcHHHHHHHHhCC
Confidence 333444444 5899999999999999999984
No 494
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.35 E-value=0.0099 Score=53.77 Aligned_cols=28 Identities=29% Similarity=0.560 Sum_probs=24.6
Q ss_pred CCCCcc--eEEECCCCCChHHHHHHHHhhc
Q 048723 28 KAWKRG--YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 28 ~~~~rg--~lL~GPpGtGKTtlakaia~~l 55 (236)
+++.+| .+++||||+|||+|+..|++..
T Consensus 170 ~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 170 APIGKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp SCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred ccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence 566777 9999999999999999999864
No 495
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.32 E-value=0.0083 Score=51.15 Aligned_cols=22 Identities=23% Similarity=0.520 Sum_probs=20.1
Q ss_pred ceEEECCCCCChHHHHHHHHhh
Q 048723 33 GYLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~ 54 (236)
.++|+|+||+|||||..+|.+.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3899999999999999999975
No 496
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.32 E-value=0.0098 Score=47.65 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=20.5
Q ss_pred ceEEECCCCCChHHHHHHHHhhc
Q 048723 33 GYLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~~l 55 (236)
.++|+|++|+|||||+..+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998754
No 497
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.32 E-value=0.013 Score=51.21 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.6
Q ss_pred CcceEEECCCCCChHHHHHHHHhh
Q 048723 31 KRGYLLYGPPGTGKSTMIAAMANF 54 (236)
Q Consensus 31 ~rg~lL~GPpGtGKTtlakaia~~ 54 (236)
.+|++|.|++|+||||++..+...
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 456999999999999999999875
No 498
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.31 E-value=0.0086 Score=48.27 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=20.2
Q ss_pred eEEECCCCCChHHHHHHHHhhc
Q 048723 34 YLLYGPPGTGKSTMIAAMANFL 55 (236)
Q Consensus 34 ~lL~GPpGtGKTtlakaia~~l 55 (236)
++|+|++|+|||||++.+.+..
T Consensus 31 i~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 31 IVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999998753
No 499
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.31 E-value=0.022 Score=59.93 Aligned_cols=42 Identities=21% Similarity=0.367 Sum_probs=29.3
Q ss_pred CCCCCcceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723 27 GKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN 70 (236)
Q Consensus 27 ~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN 70 (236)
|++..+.++|+||||||||+|+..++...... +...+++++.
T Consensus 30 Gi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~--G~~vlYI~te 71 (1706)
T 3cmw_A 30 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAE 71 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTT
T ss_pred CcCCCeEEEEECCCCCCHHHHHHHHHHHHhhC--CCceEEEEec
Confidence 45555559999999999999999988754322 2344455543
No 500
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.29 E-value=0.0085 Score=46.96 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=19.4
Q ss_pred ceEEECCCCCChHHHHHHHHh
Q 048723 33 GYLLYGPPGTGKSTMIAAMAN 53 (236)
Q Consensus 33 g~lL~GPpGtGKTtlakaia~ 53 (236)
.++|+|++|+|||||+..+.+
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 399999999999999999985
Done!