BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048725
(661 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E9Y|A Chain A, Arabidopsis Thaliana Acetohydroxyacid Synthase In Complex
With Monosulfuron
pdb|3EA4|A Chain A, Arabidopsis Thaliana Acetohydroxyacid Synthase In Complex
With Monosulfuron-Ester
Length = 584
Score = 1057 bits (2734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/584 (85%), Positives = 544/584 (93%)
Query: 78 FSSRFAPDQPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQG 137
F SRFAPDQPRKGADILVEALERQGV VFAYPGGASMEIHQALTRS++IRNVLPRHEQG
Sbjct: 1 FISRFAPDQPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQG 60
Query: 138 GIFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAF 197
G+FAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAF
Sbjct: 61 GVFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAF 120
Query: 198 QETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPN 257
QETPIVEVTRSITKHNYLV+DV+DIPRI+ EAF LATSGRPGPVL+DVPKDIQQQLA+PN
Sbjct: 121 QETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKDIQQQLAIPN 180
Query: 258 WNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGI 317
W Q ++LPGYMSR+PK P + HLEQIVRLISESKKPVLYVGGGCLNSS+EL +FVELTGI
Sbjct: 181 WEQAMRLPGYMSRMPKPPEDSHLEQIVRLISESKKPVLYVGGGCLNSSDELGRFVELTGI 240
Query: 318 PVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFA 377
PVA+TLMGLGS+P DELSL MLGMHGTVYANYAV+ SDLLLAFGVRFDDRVTGKLEAFA
Sbjct: 241 PVATTLMGLGSYPXDDELSLHMLGMHGTVYANYAVEHSDLLLAFGVRFDDRVTGKLEAFA 300
Query: 378 SRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDE 437
SRAKIVHIDIDSAEIGKNK PHVSVC D+KLAL+G+N++L + E + DF WR EL+
Sbjct: 301 SRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLENRAEELKLDFGVWRNELNV 360
Query: 438 QKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLT 497
QK K+PLSFKTF E+IPPQYAI+VLDELT+G+AIISTGVGQHQMWAAQFY Y++PRQWL+
Sbjct: 361 QKQKFPLSFKTFGEAIPPQYAIKVLDELTDGKAIISTGVGQHQMWAAQFYNYKKPRQWLS 420
Query: 498 SGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQ 557
SGGLGAMGFGLPAAIGA+VANPDAI+VDIDGDGSFIMNVQELATI+VE LP+K+LLLNNQ
Sbjct: 421 SGGLGAMGFGLPAAIGASVANPDAIVVDIDGDGSFIMNVQELATIRVENLPVKVLLLNNQ 480
Query: 558 HLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQ 617
HLGMVMQWEDRFYKANRAHT+LGDP++E EIFPNML FA ACGIP A+VT+KADLR AIQ
Sbjct: 481 HLGMVMQWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVTKKADLREAIQ 540
Query: 618 TMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFKDVITEGDGRTQY 661
TMLDTPGPYLLDVI PHQEHVLPMIPSGG F DVITEGDGR +Y
Sbjct: 541 TMLDTPGPYLLDVICPHQEHVLPMIPSGGTFNDVITEGDGRIKY 584
>pdb|1YBH|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide
Chlorimuron Ethyl
pdb|1YHY|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Metsulfuron Methyl
pdb|1YHZ|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Chlorsulfuron
pdb|1YI0|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Sulfometuron Methyl
pdb|1YI1|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Tribenuron Methyl
pdb|1Z8N|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With An Imidazolinone Herbicide,
Imazaquin
Length = 590
Score = 1056 bits (2731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/583 (85%), Positives = 543/583 (93%)
Query: 78 FSSRFAPDQPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQG 137
F SRFAPDQPRKGADILVEALERQGV VFAYPGGASMEIHQALTRS++IRNVLPRHEQG
Sbjct: 2 FISRFAPDQPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQG 61
Query: 138 GIFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAF 197
G+FAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAF
Sbjct: 62 GVFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAF 121
Query: 198 QETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPN 257
QETPIVEVTRSITKHNYLV+DV+DIPRI+ EAF LATSGRPGPVL+DVPKDIQQQLA+PN
Sbjct: 122 QETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKDIQQQLAIPN 181
Query: 258 WNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGI 317
W Q ++LPGYMSR+PK P + HLEQIVRLISESKKPVLYVGGGCLNSS+EL +FVELTGI
Sbjct: 182 WEQAMRLPGYMSRMPKPPEDSHLEQIVRLISESKKPVLYVGGGCLNSSDELGRFVELTGI 241
Query: 318 PVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFA 377
PVASTLMGLGS+P DELSL MLGMHGTVYANYAV+ SDLLLAFGVRFDDRVTGKLEAFA
Sbjct: 242 PVASTLMGLGSYPXDDELSLHMLGMHGTVYANYAVEHSDLLLAFGVRFDDRVTGKLEAFA 301
Query: 378 SRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDE 437
SRAKIVHIDIDSAEIGKNK PHVSVC D+KLAL+G+N++L + E + DF WR EL+
Sbjct: 302 SRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLENRAEELKLDFGVWRNELNV 361
Query: 438 QKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLT 497
QK K+PLSFKTF E+IPPQYAI+VLDELT+G+AIISTGVGQHQMWAAQFY Y++PRQWL+
Sbjct: 362 QKQKFPLSFKTFGEAIPPQYAIKVLDELTDGKAIISTGVGQHQMWAAQFYNYKKPRQWLS 421
Query: 498 SGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQ 557
SGGLGAMGFGLPAAIGA+VANPDAI+VDIDGDGSFIMNVQELATI+VE LP+K+LLLNNQ
Sbjct: 422 SGGLGAMGFGLPAAIGASVANPDAIVVDIDGDGSFIMNVQELATIRVENLPVKVLLLNNQ 481
Query: 558 HLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQ 617
HLGMVMQWEDRFYKANRAHT+LGDP++E EIFPNML FA ACGIP A+VT+KADLR AIQ
Sbjct: 482 HLGMVMQWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVTKKADLREAIQ 541
Query: 618 TMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFKDVITEGDGRTQ 660
TMLDTPGPYLLDVI PHQEHVLPMIPSGG F DVITEGDGR +
Sbjct: 542 TMLDTPGPYLLDVICPHQEHVLPMIPSGGTFNDVITEGDGRLE 584
>pdb|1JSC|A Chain A, Crystal Structure Of The Catalytic Subunit Of Yeast
Acetohydroxyacid Synthase: A Target For Herbicidal
Inhibitors
pdb|1JSC|B Chain B, Crystal Structure Of The Catalytic Subunit Of Yeast
Acetohydroxyacid Synthase: A Target For Herbicidal
Inhibitors
Length = 630
Score = 455 bits (1170), Expect = e-128, Method: Compositional matrix adjust.
Identities = 250/587 (42%), Positives = 348/587 (59%), Gaps = 37/587 (6%)
Query: 90 GADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS 149
G I E + RQ V VF YPGGA + ++ A+ S+ VLP+HEQG AEGYAR+S
Sbjct: 37 GGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYARAS 96
Query: 150 GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSI 209
GKPG+ + TSGPGATN+V+ +ADA D +P+V TGQVP IGTDAFQE +V ++RS
Sbjct: 97 GKPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADVVGISRSC 156
Query: 210 TKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPG--- 266
TK N +V V+++P + EAF +ATSGRPGPVL+D+PKD+ + LP
Sbjct: 157 TKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDLPKDVTAAILRNPIPTKTTLPSNAL 216
Query: 267 --YMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTG---IPVAS 321
SR E + + LI+ +KKPVLYVG G LN ++ R EL+ IPV +
Sbjct: 217 NQLTSRAQDEFVMQSINKAADLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIPVTT 276
Query: 322 TLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAF----- 376
TL GLGSF D SL MLGMHG AN AV +DL++A G RFDDRVTG + F
Sbjct: 277 TLQGLGSFDQEDPKSLDMLGMHGCATANLAVQNADLIIAVGARFDDRVTGNISKFAPEAR 336
Query: 377 ----ASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLAL-KGINRILGGKDAEGRFDFSAW 431
R I+H ++ I K Q ++V D L K +++I K+ S W
Sbjct: 337 RAAAEGRGGIIHFEVSPKNINKVVQTQIAVEGDATTNLGKMMSKIFPVKER------SEW 390
Query: 432 REELDEQKVKYPLSF--KTFEESIPPQYAIQVLDELTNG---EAIISTGVGQHQMWAAQF 486
++++ K +YP ++ +T I PQ I+ L ++ N I++TGVGQHQMWAAQ
Sbjct: 391 FAQINKWKKEYPYAYMEETPGSKIKPQTVIKKLSKVANDTGRHVIVTTGVGQHQMWAAQH 450
Query: 487 YKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEK 546
+ +R P ++TSGGLG MG+GLPAAIGA VA P+++++DIDGD SF M + EL++
Sbjct: 451 WTWRNPHTFITSGGLGTMGYGLPAAIGAQVAKPESLVIDIDGDASFNMTLTELSSAVQAG 510
Query: 547 LPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQV 606
P+KIL+LNN+ GMV QW+ FY+ +HT+ ++ P+ +K AEA G+ G +V
Sbjct: 511 TPVKILILNNEEQGMVTQWQSLFYEHRYSHTH--------QLNPDFIKLAEAMGLKGLRV 562
Query: 607 TRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFKDVIT 653
++ +L A ++ + T GP LL+V + VLPM+ G + I
Sbjct: 563 KKQEELDAKLKEFVSTKGPVLLEVEVDKKVPVLPMVAGGSGLDEFIN 609
>pdb|1N0H|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorimuron Ethyl
pdb|1N0H|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorimuron Ethyl
pdb|1T9A|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Tribenuron Methyl
pdb|1T9A|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Tribenuron Methyl
pdb|1T9B|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorsulfuron
pdb|1T9B|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorsulfuron
pdb|1T9C|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Sulfometuron
Methyl
pdb|1T9C|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Sulfometuron
Methyl
pdb|1T9D|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|C Chain C, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|D Chain D, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
Length = 677
Score = 455 bits (1170), Expect = e-128, Method: Compositional matrix adjust.
Identities = 250/587 (42%), Positives = 348/587 (59%), Gaps = 37/587 (6%)
Query: 90 GADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS 149
G I E + RQ V VF YPGGA + ++ A+ S+ VLP+HEQG AEGYAR+S
Sbjct: 84 GGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYARAS 143
Query: 150 GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSI 209
GKPG+ + TSGPGATN+V+ +ADA D +P+V TGQVP IGTDAFQE +V ++RS
Sbjct: 144 GKPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADVVGISRSC 203
Query: 210 TKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPG--- 266
TK N +V V+++P + EAF +ATSGRPGPVL+D+PKD+ + LP
Sbjct: 204 TKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDLPKDVTAAILRNPIPTKTTLPSNAL 263
Query: 267 --YMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTG---IPVAS 321
SR E + + LI+ +KKPVLYVG G LN ++ R EL+ IPV +
Sbjct: 264 NQLTSRAQDEFVMQSINKAADLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIPVTT 323
Query: 322 TLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAF----- 376
TL GLGSF D SL MLGMHG AN AV +DL++A G RFDDRVTG + F
Sbjct: 324 TLQGLGSFDQEDPKSLDMLGMHGCATANLAVQNADLIIAVGARFDDRVTGNISKFAPEAR 383
Query: 377 ----ASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLAL-KGINRILGGKDAEGRFDFSAW 431
R I+H ++ I K Q ++V D L K +++I K+ S W
Sbjct: 384 RAAAEGRGGIIHFEVSPKNINKVVQTQIAVEGDATTNLGKMMSKIFPVKER------SEW 437
Query: 432 REELDEQKVKYPLSF--KTFEESIPPQYAIQVLDELTNG---EAIISTGVGQHQMWAAQF 486
++++ K +YP ++ +T I PQ I+ L ++ N I++TGVGQHQMWAAQ
Sbjct: 438 FAQINKWKKEYPYAYMEETPGSKIKPQTVIKKLSKVANDTGRHVIVTTGVGQHQMWAAQH 497
Query: 487 YKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEK 546
+ +R P ++TSGGLG MG+GLPAAIGA VA P+++++DIDGD SF M + EL++
Sbjct: 498 WTWRNPHTFITSGGLGTMGYGLPAAIGAQVAKPESLVIDIDGDASFNMTLTELSSAVQAG 557
Query: 547 LPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQV 606
P+KIL+LNN+ GMV QW+ FY+ +HT+ ++ P+ +K AEA G+ G +V
Sbjct: 558 TPVKILILNNEEQGMVTQWQSLFYEHRYSHTH--------QLNPDFIKLAEAMGLKGLRV 609
Query: 607 TRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFKDVIT 653
++ +L A ++ + T GP LL+V + VLPM+ G + I
Sbjct: 610 KKQEELDAKLKEFVSTKGPVLLEVEVDKKVPVLPMVAGGSGLDEFIN 656
>pdb|2PAN|A Chain A, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|B Chain B, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|C Chain C, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|D Chain D, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|E Chain E, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|F Chain F, Crystal Structure Of E. Coli Glyoxylate Carboligase
Length = 616
Score = 263 bits (673), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 176/565 (31%), Positives = 280/565 (49%), Gaps = 23/565 (4%)
Query: 80 SRFAPDQPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGI 139
S A + D LE++G+T F PG A + A + IR++L RH +G
Sbjct: 19 SHXASXAKXRAVDAAXYVLEKEGITTAFGVPGAAINPFYSAXRKHGGIRHILARHVEGAS 78
Query: 140 FAAEGYARSS-GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQ 198
AEGY R++ G G+C+ TSGP T+ ++ L A DS+P++ ITGQ PR + + FQ
Sbjct: 79 HXAEGYTRATAGNIGVCLGTSGPAGTDXITALYSASADSIPILCITGQAPRARLHKEDFQ 138
Query: 199 ETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQ--QQLAVP 256
I + + ++K V + +PR++++AF L SGRPGPVL+D+P D+Q + P
Sbjct: 139 AVDIEAIAKPVSKXAVTVREAALVPRVLQQAFHLXRSGRPGPVLVDLPFDVQVAEIEFDP 198
Query: 257 NWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEE--LRKFVEL 314
+ +P LP Y S +E+ V + ++++PV+ GGG +N+ L++F EL
Sbjct: 199 DXYEP--LPVYKP----AASRXQIEKAVEXLIQAERPVIVAGGGVINADAAALLQQFAEL 252
Query: 315 TGIPVASTLMGLGSFPGTDELSLQMLGMH-GTVYANYAVDKSDLLLAFGVRFDDRVTGKL 373
T +PV TL G G P EL +G+ Y N + SD + G RF +R TG +
Sbjct: 253 TSVPVIPTLXGWGCIPDDHELXAGXVGLQTAHRYGNATLLASDXVFGIGNRFANRHTGSV 312
Query: 374 EAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWRE 433
E + KIVHIDI+ +IG+ P + + +D K AL + + GR R+
Sbjct: 313 EKYTEGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVEVAQEXQKAGRL---PCRK 369
Query: 434 EL--DEQKVKYPLSFKTFEESIP--PQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKY 489
E D Q+ K L KT +++P PQ + ++ + T +G Q+ AAQ
Sbjct: 370 EWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEXNKAFGRDVCYVTTIGLSQIAAAQXLHV 429
Query: 490 RRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPI 549
+ R W+ G G +G+ +PAA+G A+P +V I GD F ++ELA +P
Sbjct: 430 FKDRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDFDFQFLIEELAVGAQFNIPY 489
Query: 550 KILLLNNQHLGMVMQWEDRF---YKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQV 606
+L+NN +LG++ Q + F Y A + + S + + +K AE G +V
Sbjct: 490 IHVLVNNAYLGLIRQSQRAFDXDYCVQLAFENI-NSSEVNGYGVDHVKVAEGLGCKAIRV 548
Query: 607 TRKADLRAAIQTMLDTPGPYLLDVI 631
+ D+ A + Y + V+
Sbjct: 549 FKPEDIAPAFEQAKALXAQYRVPVV 573
>pdb|3EYA|A Chain A, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|B Chain B, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|C Chain C, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|D Chain D, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|E Chain E, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|F Chain F, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|G Chain G, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|H Chain H, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|I Chain I, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|J Chain J, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|K Chain K, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|L Chain L, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
Length = 549
Score = 202 bits (513), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 158/557 (28%), Positives = 264/557 (47%), Gaps = 34/557 (6%)
Query: 91 ADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSG 150
A + + LE GV ++ G + + +L R I + RHE+ FAA A+ SG
Sbjct: 6 AAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQLSG 65
Query: 151 KPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSIT 210
+ +C + GPG +L++GL D + VP++AI +P IG+ FQET E+ R +
Sbjct: 66 ELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECS 125
Query: 211 KHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQ----QLAVPNWN---QPIK 263
+ LV + IP+++ A A R G ++ +P D+ + A +W QP+
Sbjct: 126 HYCELVSSPEQIPQVLAIAMRKAVLNR-GVSVVVLPGDVALKPAPEGATMHWYHAPQPV- 183
Query: 264 LPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTL 323
P E L ++ +L+ S L G GC + +EL +F P+ L
Sbjct: 184 ---------VTPEEEELRKLAQLLRYSSNIALMCGSGCAGAHKELVEFAGKIKAPIVHAL 234
Query: 324 MGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIV 383
G + + M G+ G + + +D L+ G +F R + + AKI+
Sbjct: 235 RGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQFPYRAF-----YPTDAKII 289
Query: 384 HIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYP 443
IDI+ A IG + + +++ D+K L+ + ++ K A+ +F A + D +K
Sbjct: 290 QIDINPASIGAHSKVDMALVGDIKSTLRALLPLVEEK-ADRKFLDKALEDYRDARKGLDD 348
Query: 444 LSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGA 503
L+ K E++I PQY Q + +AI + VG +WAA++ K R+ L S G+
Sbjct: 349 LA-KPSEKAIHPQYLAQQISHFAADDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGS 407
Query: 504 MGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVM 563
M +P A+GA P+ +V + GDG F M + + ++ KLP+KI++ NN LG V
Sbjct: 408 MANAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMKLPVKIVVFNNSVLGFVA 467
Query: 564 QWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTP 623
+A YL D + + N + AEACGI G +V + +++ A+Q
Sbjct: 468 M-------EMKAGGYLTDGTELHDT--NFARIAEACGITGIRVEKASEVDEALQRAFSID 518
Query: 624 GPYLLDVIFPHQEHVLP 640
GP L+DV+ +E +P
Sbjct: 519 GPVLVDVVVAKEELAIP 535
>pdb|3EY9|A Chain A, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EY9|B Chain B, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
Length = 572
Score = 202 bits (513), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 158/557 (28%), Positives = 264/557 (47%), Gaps = 34/557 (6%)
Query: 91 ADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSG 150
A + + LE GV ++ G + + +L R I + RHE+ FAA A+ SG
Sbjct: 6 AAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQLSG 65
Query: 151 KPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSIT 210
+ +C + GPG +L++GL D + VP++AI +P IG+ FQET E+ R +
Sbjct: 66 ELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECS 125
Query: 211 KHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQ----QLAVPNWN---QPIK 263
+ LV + IP+++ A A R G ++ +P D+ + A +W QP+
Sbjct: 126 HYCELVSSPEQIPQVLAIAMRKAVLNR-GVSVVVLPGDVALKPAPEGATMHWYHAPQPV- 183
Query: 264 LPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTL 323
P E L ++ +L+ S L G GC + +EL +F P+ L
Sbjct: 184 ---------VTPEEEELRKLAQLLRYSSNIALMCGSGCAGAHKELVEFAGKIKAPIVHAL 234
Query: 324 MGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIV 383
G + + M G+ G + + +D L+ G +F R + + AKI+
Sbjct: 235 RGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQFPYRAF-----YPTDAKII 289
Query: 384 HIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYP 443
IDI+ A IG + + +++ D+K L+ + ++ K A+ +F A + D +K
Sbjct: 290 QIDINPASIGAHSKVDMALVGDIKSTLRALLPLVEEK-ADRKFLDKALEDYRDARKGLDD 348
Query: 444 LSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGA 503
L+ K E++I PQY Q + +AI + VG +WAA++ K R+ L S G+
Sbjct: 349 LA-KPSEKAIHPQYLAQQISHFAADDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGS 407
Query: 504 MGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVM 563
M +P A+GA P+ +V + GDG F M + + ++ KLP+KI++ NN LG V
Sbjct: 408 MANAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMKLPVKIVVFNNSVLGFVA 467
Query: 564 QWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTP 623
+A YL D + + N + AEACGI G +V + +++ A+Q
Sbjct: 468 M-------EMKAGGYLTDGTELHDT--NFARIAEACGITGIRVEKASEVDEALQRAFSID 518
Query: 624 GPYLLDVIFPHQEHVLP 640
GP L+DV+ +E +P
Sbjct: 519 GPVLVDVVVAKEELAIP 535
>pdb|1OZG|A Chain A, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactor And
With An Unusual Intermediate
pdb|1OZG|B Chain B, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactor And
With An Unusual Intermediate
pdb|1OZH|A Chain A, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZH|B Chain B, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZH|C Chain C, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZH|D Chain D, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZF|A Chain A, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactors
pdb|1OZF|B Chain B, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactors
Length = 566
Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 158/573 (27%), Positives = 270/573 (47%), Gaps = 48/573 (8%)
Query: 86 QPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGY 145
Q GAD++V LE QGV VF PG ++ +L S+ IR + RHE F A
Sbjct: 9 QWAHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSS-IRIIPVRHEANAAFMAAAV 67
Query: 146 ARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEV 205
R +GK G+ + TSGPG +NL++G+A A + P+VA+ G V R Q V +
Sbjct: 68 GRITGKAGVALVTSGPGCSNLITGMATANSEGDPVVALGGAVKRADKAKQVHQSMDTVAM 127
Query: 206 TRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLP 265
+TK+ V D + +V AF A GRPG + +P+D+ V P
Sbjct: 128 FSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQDVVDG-PVSGKVLPASGA 186
Query: 266 GYMSRLPKEPSEVHLEQIVRLISESKKPVLYVG--GGCLNSSEELRKFVELTGIPVASTL 323
M P + ++Q+ +LI+++K P+ +G +S+ LR+ +E + IPV ST
Sbjct: 187 PQMGAAPDDA----IDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTY 242
Query: 324 MGLGSFPGTDELSLQMLGMHGTVYANYAVDK----SDLLLAFG---VRFDDRVTGKLEAF 376
G+ D S + G G ++ N A D+ +DL++ G V ++ +
Sbjct: 243 QAAGAV-NQDNFS-RFAGRVG-LFNNQAGDRLLQLADLVICIGYSPVEYEPAMWN----- 294
Query: 377 ASRAKIVHIDIDSAEIGKNKQPHVSVCADL-----KLALKGINR-ILGGKDAEGRFDFSA 430
+ A +VHID+ A +N P V + D+ KLA +R +L + AE D
Sbjct: 295 SGNATLVHIDVLPAYEERNYTPDVELVGDIAGTLNKLAQNIDHRLVLSPQAAEILRDRQH 354
Query: 431 WREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYR 490
RE LD + + F ++ P ++ + ++ N + ++ +G +W A++
Sbjct: 355 QRELLDRRGAQ----LNQF--ALHPLRIVRAMQDIVNSDVTLTVDMGSFHIWIARYLYTF 408
Query: 491 RPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELAT-IKVEKLPI 549
R RQ + S G MG LP AIGA + NP+ +V + GDG F+ + EL T ++++ +
Sbjct: 409 RARQVMISNGQQTMGVALPWAIGAWLVNPERKVVSVSGDGGFLQSSMELETAVRLKANVL 468
Query: 550 KILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLK-FAEACGIPGAQVTR 608
++ ++N + + +Q E ++ + + E P K +AE+ G G V
Sbjct: 469 HLIWVDNGYNMVAIQEEKKYQRLSGV-----------EFGPMDFKAYAESFGAKGFAVES 517
Query: 609 KADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPM 641
L ++ +D GP ++ + ++++ L M
Sbjct: 518 AEALEPTLRAAMDVDGPAVVAIPVDYRDNPLLM 550
>pdb|2PGN|A Chain A, The Crystal Structure Of Fad And Thdp-Dependent
Cyclohexane-1,2-Dione Hydrolase In Complex With
Cyclohexane-1,2-Dione
pdb|2PGN|B Chain B, The Crystal Structure Of Fad And Thdp-Dependent
Cyclohexane-1,2-Dione Hydrolase In Complex With
Cyclohexane-1,2-Dione
pdb|2PGO|A Chain A, The Crystal Structure Of Fad And Thdp Dependent
Cyclohexane-1,2-Dione Hydrolase (Cdh) From Azoarcus Sp.
Strain 22lin
pdb|2PGO|B Chain B, The Crystal Structure Of Fad And Thdp Dependent
Cyclohexane-1,2-Dione Hydrolase (Cdh) From Azoarcus Sp.
Strain 22lin
Length = 589
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 151/566 (26%), Positives = 247/566 (43%), Gaps = 49/566 (8%)
Query: 88 RKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVL-PRHEQGGIFAAEGYA 146
++GAD++VEALE G V + G S + A ++S+ + V+ P E GG + GY
Sbjct: 4 KRGADLIVEALEEYGTEQVVGFIGHTSHFVADAFSKSHLGKRVINPATELGGAWMVNGYN 63
Query: 147 RSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIG-TDAFQETPIVEV 205
+ A G L + + +A +P V I R+ G ++A Q+ P
Sbjct: 64 YVKDRSAAVGAWHCVGNLLLHAAMQEARTGRIPAVHIGLNSDGRLAGRSEAAQQVPWQSF 123
Query: 206 TRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD-----IQQQLAVPNWNQ 260
T I + V +D + + EAF +A GP +D+P D I + VP
Sbjct: 124 T-PIARSTQRVERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFDLTADQIDDKALVPRGAT 182
Query: 261 PIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNS--SEELRKFVELTGIP 318
K + P+E E +L++ +K PV+ GGG S SE L K E+ G+P
Sbjct: 183 RAK------SVLHAPNEDVREAAAQLVA-AKNPVILAGGGVARSGGSEALLKLAEMVGVP 235
Query: 319 VASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFAS 378
V +T G G FP T L++ G G AN + +D +L G R D G + + +
Sbjct: 236 VVTTSTGAGVFPETHALAMGSAGFCGWKSANDMMAAADFVLVLGSRLSD--WGIAQGYIT 293
Query: 379 RA-KIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDA------EGRFDF--- 428
+ K VH+D D A +G P +SV AD K ++ + +L G + R +F
Sbjct: 294 KMPKFVHVDTDPAVLGTFYFPLLSVVADAKTFMEQLIEVLPGTSGFKAVRYQERENFRQA 353
Query: 429 ----SAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAA 484
+AW + EQ+ + F A+ + ++ E II T +G H +
Sbjct: 354 TEFRAAWDGWVREQESGDGMPASMFR-------AMAEVRKVQRPEDIIVTDIGNHTLPMF 406
Query: 485 QFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKV 544
+RPR+ +TS G +G G P A+GA +A P++ + GDG+ + E
Sbjct: 407 GGAILQRPRRLVTSMAEGILGCGFPMALGAQLAEPNSRVFLGTGDGALYYHFNEFRVAVE 466
Query: 545 EKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGA 604
KLP+ ++ N+ G + + N ++ P+ + A+A G G
Sbjct: 467 HKLPVITMVFTNESYGANWTLMNHQFGQNNWTEFMN---------PDWVGIAKAFGAYGE 517
Query: 605 QVTRKADLRAAIQTMLDTPGPYLLDV 630
V D+ A+Q +D+ P L+++
Sbjct: 518 SVRETGDIAGALQRAIDSGKPALIEI 543
>pdb|1Y9D|A Chain A, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
pdb|1Y9D|B Chain B, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
pdb|1Y9D|C Chain C, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
pdb|1Y9D|D Chain D, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
Length = 603
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 129/476 (27%), Positives = 224/476 (47%), Gaps = 19/476 (3%)
Query: 94 LVEALERQGVTDVFAYPGGASMEIHQALT-RSNNIRNVLPRHEQGGIFAAEGYARSSGKP 152
+++ LE GV ++ PGG+ I AL+ + I + RHE+ G AA A+ +GK
Sbjct: 17 VIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKI 76
Query: 153 GICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKH 212
G+C ++GPG T+L++GL DA D VP++A+ GQ + D FQE + + +
Sbjct: 77 GVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADY 136
Query: 213 NYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDI-QQQLAVPNWNQPIKLPGYMSRL 271
N ++ +P ++ EA A + + G ++ +P D+ QQ+ +W Y + L
Sbjct: 137 NVTAVNAATLPHVIDEAIRRAYAHQ-GVAVVQIPVDLPWQQIPAEDWYASAN--SYQTPL 193
Query: 272 PKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLGSFPG 331
EP + ++ + + +++P++Y G G + +EL + + IP+ ST G
Sbjct: 194 LPEPDVQAVTRLTQTLLAAERPLIYYGIGARKAGKELEQLSKTLKIPLMSTYPAKGIVAD 253
Query: 332 TDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAE 391
L AN A+ ++D++L G + K AF + + IDID A+
Sbjct: 254 RYPAYLGSANRAAQKPANEALAQADVVLFVGNNYPFAEVSK--AFKNTRYFLQIDIDPAK 311
Query: 392 IGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQK--VKYPLSFKTF 449
+GK + ++V AD + L I + +++ W+ L K Y S +
Sbjct: 312 LGKRHKTDIAVLADAQKTLAAILAQVSEREST-----PWWQANLANVKNWRAYLASLEDK 366
Query: 450 EESIPPQYAIQVL---DELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGF 506
+E P A QVL +++ +AI S VG + A + K + +TS MG
Sbjct: 367 QEG--PLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMGV 424
Query: 507 GLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMV 562
G+P AI A + P+ + ++ GDG M +Q+LAT LP+ ++ N G +
Sbjct: 425 GIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTNCQYGFI 480
>pdb|1POW|A Chain A, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
pdb|1POW|B Chain B, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
Length = 585
Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 129/476 (27%), Positives = 224/476 (47%), Gaps = 19/476 (3%)
Query: 94 LVEALERQGVTDVFAYPGGASMEIHQALT-RSNNIRNVLPRHEQGGIFAAEGYARSSGKP 152
+++ LE GV ++ PGG+ I AL+ + I + RHE+ G AA A+ +GK
Sbjct: 9 VIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKI 68
Query: 153 GICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKH 212
G+C ++GPG T+L++GL DA D VP++A+ GQ + D FQE + + +
Sbjct: 69 GVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADY 128
Query: 213 NYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDI-QQQLAVPNWNQPIKLPGYMSRL 271
N ++ +P ++ EA A + + G ++ +P D+ QQ+ +W Y + L
Sbjct: 129 NVTAVNAATLPHVIDEAIRRAYAHQ-GVAVVQIPVDLPWQQIPAEDWYASAN--SYQTPL 185
Query: 272 PKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLGSFPG 331
EP + ++ + + +++P++Y G G + +EL + + IP+ ST G
Sbjct: 186 LPEPDVQAVTRLTQTLLAAERPLIYYGIGARKAGKELEQLSKTLKIPLMSTYPAKGIVAD 245
Query: 332 TDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAE 391
L AN A+ ++D++L G + K AF + + IDID A+
Sbjct: 246 RYPAYLGSANRVAQKPANEALAQADVVLFVGNNYPFAEVSK--AFKNTRYFLQIDIDPAK 303
Query: 392 IGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQK--VKYPLSFKTF 449
+GK + ++V AD + L I + +++ W+ L K Y S +
Sbjct: 304 LGKRHKTDIAVLADAQKTLAAILAQVSEREST-----PWWQANLANVKNWRAYLASLEDK 358
Query: 450 EESIPPQYAIQVL---DELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGF 506
+E P A QVL +++ +AI S VG + A + K + +TS MG
Sbjct: 359 QEG--PLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMGV 416
Query: 507 GLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMV 562
G+P AI A + P+ + ++ GDG M +Q+LAT LP+ ++ N G +
Sbjct: 417 GIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTNCQYGFI 472
>pdb|4FEE|A Chain A, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal B
pdb|4FEE|B Chain B, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal B
pdb|4FEG|A Chain A, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal A
pdb|4FEG|B Chain B, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal A
Length = 603
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 129/476 (27%), Positives = 224/476 (47%), Gaps = 19/476 (3%)
Query: 94 LVEALERQGVTDVFAYPGGASMEIHQALT-RSNNIRNVLPRHEQGGIFAAEGYARSSGKP 152
+++ LE GV ++ PGG+ I AL+ + I + RHE+ G AA A+ +GK
Sbjct: 17 VIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKI 76
Query: 153 GICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKH 212
G+C ++GPG T+L++GL DA D VP++A+ GQ + D FQE + + +
Sbjct: 77 GVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADY 136
Query: 213 NYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDI-QQQLAVPNWNQPIKLPGYMSRL 271
N ++ +P ++ EA A + + G ++ +P D+ QQ+ +W Y + L
Sbjct: 137 NVTAVNAATLPHVIDEAIRRAYAHQ-GVAVVQIPVDLPWQQIPAEDWYASAN--SYQTPL 193
Query: 272 PKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLGSFPG 331
EP + ++ + + +++P++Y G G + +EL + + IP+ ST G
Sbjct: 194 LPEPDVQAVTRLTQTLLAAERPLIYYGIGARKAGKELEQLSKTLKIPLMSTYPAKGIVAD 253
Query: 332 TDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAE 391
L AN A+ ++D++L G + K AF + + IDID A+
Sbjct: 254 RYPAYLGSANRVAQKPANEALAQADVVLFVGNNYPFAEVSK--AFKNTRYFLQIDIDPAK 311
Query: 392 IGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQK--VKYPLSFKTF 449
+GK + ++V AD + L I + +++ W+ L K Y S +
Sbjct: 312 LGKRHKTDIAVLADAQKTLAAILAQVSEREST-----PWWQANLANVKNWRAYLASLEDK 366
Query: 450 EESIPPQYAIQVL---DELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGF 506
+E P A QVL +++ +AI S VG + A + K + +TS MG
Sbjct: 367 QEG--PLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMGV 424
Query: 507 GLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMV 562
G+P AI A + P+ + ++ GDG M +Q+LAT LP+ ++ N G +
Sbjct: 425 GIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTNCQYGFI 480
>pdb|2EZ4|A Chain A, Pyruvate Oxidase Variant F479w
pdb|2EZ4|B Chain B, Pyruvate Oxidase Variant F479w
pdb|2EZ8|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Lactyl-Thiamin Diphosphate
pdb|2EZ8|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Lactyl-Thiamin Diphosphate
pdb|2EZ9|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate Analogue 2-Phosphonolactyl-Thiamin
Diphosphate
pdb|2EZ9|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate Analogue 2-Phosphonolactyl-Thiamin
Diphosphate
pdb|2EZT|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Hydroxyethyl-Thiamin Diphosphate
pdb|2EZT|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Hydroxyethyl-Thiamin Diphosphate
pdb|2EZU|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Acetyl-Thiamin Diphosphate
pdb|2EZU|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Acetyl-Thiamin Diphosphate
Length = 603
Score = 156 bits (394), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 129/476 (27%), Positives = 224/476 (47%), Gaps = 19/476 (3%)
Query: 94 LVEALERQGVTDVFAYPGGASMEIHQALT-RSNNIRNVLPRHEQGGIFAAEGYARSSGKP 152
+++ LE GV ++ PGG+ I AL+ + I + RHE+ G AA A+ +GK
Sbjct: 17 VIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKI 76
Query: 153 GICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKH 212
G+C ++GPG T+L++GL DA D VP++A+ GQ + D FQE + + +
Sbjct: 77 GVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADY 136
Query: 213 NYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDI-QQQLAVPNWNQPIKLPGYMSRL 271
N ++ +P ++ EA A + + G ++ +P D+ QQ+ +W Y + L
Sbjct: 137 NVTAVNAATLPHVIDEAIRRAYAHQ-GVAVVQIPVDLPWQQIPAEDWYASAN--SYQTPL 193
Query: 272 PKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLGSFPG 331
EP + ++ + + +++P++Y G G + +EL + + IP+ ST G
Sbjct: 194 LPEPDVQAVTRLTQTLLAAERPLIYYGIGARKAGKELEQLSKTLKIPLMSTYPAKGIVAD 253
Query: 332 TDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAE 391
L AN A+ ++D++L G + K AF + + IDID A+
Sbjct: 254 RYPAYLGSANRVAQKPANEALAQADVVLFVGNNYPFAEVSK--AFKNTRYFLQIDIDPAK 311
Query: 392 IGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQK--VKYPLSFKTF 449
+GK + ++V AD + L I + +++ W+ L K Y S +
Sbjct: 312 LGKRHKTDIAVLADAQKTLAAILAQVSEREST-----PWWQANLANVKNWRAYLASLEDK 366
Query: 450 EESIPPQYAIQVL---DELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGF 506
+E P A QVL +++ +AI S VG + A + K + +TS MG
Sbjct: 367 QEG--PLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMGV 424
Query: 507 GLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMV 562
G+P AI A + P+ + ++ GDG M +Q+LAT LP+ ++ N G +
Sbjct: 425 GIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTNCQYGWI 480
>pdb|1POX|A Chain A, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
pdb|1POX|B Chain B, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
Length = 585
Score = 156 bits (394), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 128/476 (26%), Positives = 224/476 (47%), Gaps = 19/476 (3%)
Query: 94 LVEALERQGVTDVFAYPGGASMEIHQALT-RSNNIRNVLPRHEQGGIFAAEGYARSSGKP 152
+++ LE GV ++ PGG+ I AL+ + I + RHE+ G AA A+ +GK
Sbjct: 9 VIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKI 68
Query: 153 GICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKH 212
G+C ++GPG T+L++GL DA D VP++A+ GQ + D FQE + + +
Sbjct: 69 GVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADY 128
Query: 213 NYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDI-QQQLAVPNWNQPIKLPGYMSRL 271
N ++ +P ++ EA A + + G ++ +P D+ QQ++ +W Y + L
Sbjct: 129 NVTAVNAATLPHVIDEAIRRAYAHQ-GVAVVQIPVDLPWQQISAEDWYASAN--NYQTPL 185
Query: 272 PKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLGSFPG 331
EP + ++ + + +++P++Y G G + +EL + + IP+ ST G
Sbjct: 186 LPEPDVQAVTRLTQTLLAAERPLIYYGIGARKAGKELEQLSKTLKIPLMSTYPAKGIVAD 245
Query: 332 TDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAE 391
L AN A+ ++D++L G + K AF + + IDID A+
Sbjct: 246 RYPAYLGSANRVAQKPANEALAQADVVLFVGNNYPFAEVSK--AFKNTRYFLQIDIDPAK 303
Query: 392 IGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQK--VKYPLSFKTF 449
+GK + ++V AD + L I + +++ W+ L K Y S +
Sbjct: 304 LGKRHKTDIAVLADAQKTLAAILAQVSEREST-----PWWQANLANVKNWRAYLASLEDK 358
Query: 450 EESIPPQYAIQVL---DELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGF 506
+E P A QVL +++ +AI S VG + A + K + +TS MG
Sbjct: 359 QEG--PLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMGV 416
Query: 507 GLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMV 562
G+P AI A + P+ + ++ GDG M +Q+L T LP+ ++ N G +
Sbjct: 417 GIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLVTQVQYHLPVINVVFTNCQYGFI 472
>pdb|1V5F|A Chain A, Crystal Structure Of Pyruvate Oxidase Complexed With Fad
And Tpp, From Aerococcus Viridans
pdb|1V5G|A Chain A, Crystal Structure Of The Reaction Intermediate Between
Pyruvate Oxidase Containing Fad And Tpp, And Substrate
Pyruvate
Length = 589
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 134/535 (25%), Positives = 237/535 (44%), Gaps = 46/535 (8%)
Query: 94 LVEALERQGVTDVFAYPGGASMEIHQAL-TRSNNIRNVLPRHEQGGIFAAEGYARSSGKP 152
+++ LE G ++ P G + A+ NN++ + +HE+ G AA ++ G
Sbjct: 9 VMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAVMQSKFGGNL 68
Query: 153 GICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKH 212
G+ + + GPGA++L++GL DA +D++P+VAI G P+R + DAFQE + I +
Sbjct: 69 GVTVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQNPMYDHIAVY 128
Query: 213 NYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLP 272
N V + +P++V EA +A + R G +++VP D ++ + N P
Sbjct: 129 NRRVAYAEQLPKLVDEAARMAIAKR-GVAVLEVPGDF-AKVEIDNDQWYSSANSLRKYAP 186
Query: 273 KEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLGSFPGT 332
P+ ++ V L++ SK+PV+Y G G + +++ PV +T +F
Sbjct: 187 IAPAAQDIDAAVELLNNSKRPVIYAGIGTMGHGPAVQELARKIKAPVITTGKNFETFEWD 246
Query: 333 DELSLQMLGMHGTVY------ANYAVDKSDLLLAFGVRFD-DRVTGKLEAFASRAKIVHI 385
E + G+ Y AN + ++D +L G F V G F + + I
Sbjct: 247 FE------ALTGSTYRVGWKPANETILEADTVLFAGSNFPFSEVEG---TFRNVDNFIQI 297
Query: 386 DIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDA--EGRF------DFSAWREELDE 437
DID A +GK V++ D LA I+ IL DA E + + + WRE ++
Sbjct: 298 DIDPAMLGKRHHADVAILGDAALA---IDEILNKVDAVEESAWWTANLKNIANWREYINM 354
Query: 438 QKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLT 497
+ K + ++ ++ + +AI S VG + + W T
Sbjct: 355 LETKEEGDLQFYQ-------VYNAINNHADEDAIYSIDVGNSTQTSIRHLHMTPKNMWRT 407
Query: 498 SGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQ 557
S MG +P +GA PD + +I GDG+F M ++ T +P+ ++ +N
Sbjct: 408 SPLFATMGIAIPGGLGAKNTYPDRQVWNIIGDGAFSMTYPDVVTNVRYNMPVINVVFSNT 467
Query: 558 HLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADL 612
+ ++++ N+ G + + K AEA G G V+R D+
Sbjct: 468 EYAFI---KNKYEDTNK--NLFGVDFTDVD----YAKIAEAQGAKGFTVSRIEDM 513
>pdb|1V5E|A Chain A, Crystal Structure Of Pyruvate Oxidase Containing Fad, From
Aerococcus Viridans
pdb|2DJI|A Chain A, Crystal Structure Of Pyruvate Oxidase From Aerococcus
Viridans Containing Fad
Length = 590
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 135/535 (25%), Positives = 238/535 (44%), Gaps = 46/535 (8%)
Query: 94 LVEALERQGVTDVFAYPGGASMEIHQAL-TRSNNIRNVLPRHEQGGIFAAEGYARSSGKP 152
+++ LE G ++ P G + A+ NN++ + +HE+ G AA ++ G
Sbjct: 10 VMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAVMQSKFGGNL 69
Query: 153 GICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKH 212
G+ + + GPGA++L++GL DA +D++P+VAI G P+R + DAFQE + I +
Sbjct: 70 GVTVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQNPMYDHIAVY 129
Query: 213 NYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLP 272
N V + +P++V EA +A + R G +++VP D ++ + N P
Sbjct: 130 NRRVAYAEQLPKLVDEAARMAIAKR-GVAVLEVPGDF-AKVEIDNDQWYSSANSLRKYAP 187
Query: 273 KEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLGSFPGT 332
P+ ++ V L++ SK+PV+Y G G + +++ PV +T +F
Sbjct: 188 IAPAAQDIDAAVELLNNSKRPVIYAGIGTMGHGPAVQELARKIKAPVITTGKNFETF--- 244
Query: 333 DELSLQMLGMHGTVY------ANYAVDKSDLLLAFGVRFD-DRVTGKLEAFASRAKIVHI 385
E + L G+ Y AN + ++D +L G F V G F + + I
Sbjct: 245 -EWDFEALT--GSTYRVGWKPANETILEADTVLFAGSNFPFSEVEG---TFRNVDNFIQI 298
Query: 386 DIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDA--EGRF------DFSAWREELDE 437
DID A +GK V++ D LA I+ IL DA E + + + WRE ++
Sbjct: 299 DIDPAMLGKRHHADVAILGDAALA---IDEILNKVDAVEESAWWTANLKNIANWREYINM 355
Query: 438 QKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLT 497
+ K + ++ ++ + +AI S VG + + W T
Sbjct: 356 LETKEEGDLQFYQ-------VYNAINNHADEDAIYSIDVGNSTQTSIRHLHMTPKNMWRT 408
Query: 498 SGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQ 557
S MG +P +GA PD + +I GDG+F M ++ T +P+ ++ +N
Sbjct: 409 SPLFATMGIAIPGGLGAKNTYPDRQVWNIIGDGAFSMTYPDVVTNVRYNMPVINVVFSNT 468
Query: 558 HLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADL 612
+ ++++ N+ G + + K AEA G G V+R D+
Sbjct: 469 EYAFI---KNKYEDTNK--NLFGVDFTDVD----YAKIAEAQGAKGFTVSRIEDM 514
>pdb|3D7K|A Chain A, Crystal Structure Of Benzaldehyde Lyase In Complex With
The Inhibitor Mbp
pdb|3D7K|B Chain B, Crystal Structure Of Benzaldehyde Lyase In Complex With
The Inhibitor Mbp
Length = 570
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 139/505 (27%), Positives = 252/505 (49%), Gaps = 37/505 (7%)
Query: 90 GADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS 149
G +++V L + GV +F G I QA +++ + RHE AAEGYAR+
Sbjct: 6 GGELVVRTLIKAGVEHLFGLHGAHIDTIFQACL-DHDVPIIDTRHEAAAGHAAEGYARAG 64
Query: 150 GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQE-TPIVEVTRS 208
K G+ + T+G G TN V+ +A+A LD P++ +TG R T+ Q V +
Sbjct: 65 AKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAAP 124
Query: 209 ITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDI------QQQLAVPNWNQPI 262
ITK + V+ + IPR+V +A A S GPVL+D+P DI + + +P+ +
Sbjct: 125 ITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWDILMNQIDEDSVIIPD----L 180
Query: 263 KLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEE--LRKFVELTGIPVA 320
L + +R P L+Q + L+ ++++PV+ +G ++ + L FV TG+PV
Sbjct: 181 VLSAHGAR----PDPADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVF 236
Query: 321 STLMGLGSFPGTDELSLQMLGMHGTVYAN-YAVDKS----DLLLAFGVRFD-DRVTGKLE 374
+ GL G + M G + N Y+ K+ DL+L G RF + G +
Sbjct: 237 ADYEGLSMLSGLPD------AMRGGLVQNLYSFAKADAAPDLVLMLGARFGLNTGHGSGQ 290
Query: 375 AFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAE--GRFDFSAWR 432
A+++ +D D+ E+G+ + + + AD+ ++ + + +DA R D+ A
Sbjct: 291 LIPHSAQVIQVDPDACELGRLQGIALGIVADVGGTIEALAQAT-AQDAAWPDRGDWCAKV 349
Query: 433 EELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTN-GEAIISTGVGQHQMWAAQFYKYRR 491
+L +++ + + E ++ P +A QV+ + + G +++ G + +W ++ +
Sbjct: 350 TDLAQERYASIAAKSSSEHALHPFHASQVIAKHVDAGVTVVADGALTY-LWLSEVMSRVK 408
Query: 492 PRQWLTSGGLGAMGFGLPAAIGAAVANPDA--IIVDIDGDGSFIMNVQELATIKVEKLPI 549
P +L G LG+MG G A+GA VA+ +A + + GDGS ++ E T+ ++LP+
Sbjct: 409 PGGFLCHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGDGSVGYSIGEFDTLVRKQLPL 468
Query: 550 KILLLNNQHLGMVMQWEDRFYKANR 574
++++NNQ G + ++ NR
Sbjct: 469 IVIIMNNQSWGATLHFQQLAVGPNR 493
>pdb|2AG0|A Chain A, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2AG0|B Chain B, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2AG0|C Chain C, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2AG0|D Chain D, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2UZ1|A Chain A, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
pdb|2UZ1|D Chain D, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
Length = 563
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 139/505 (27%), Positives = 252/505 (49%), Gaps = 37/505 (7%)
Query: 90 GADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS 149
G +++V L + GV +F G I QA +++ + RHE AAEGYAR+
Sbjct: 6 GGELVVRTLIKAGVEHLFGLHGAHIDTIFQACL-DHDVPIIDTRHEAAAGHAAEGYARAG 64
Query: 150 GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQE-TPIVEVTRS 208
K G+ + T+G G TN V+ +A+A LD P++ +TG R T+ Q V +
Sbjct: 65 AKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAAP 124
Query: 209 ITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDI------QQQLAVPNWNQPI 262
ITK + V+ + IPR+V +A A S GPVL+D+P DI + + +P+ +
Sbjct: 125 ITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWDILMNQIDEDSVIIPD----L 180
Query: 263 KLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEE--LRKFVELTGIPVA 320
L + +R P L+Q + L+ ++++PV+ +G ++ + L FV TG+PV
Sbjct: 181 VLSAHGAR----PDPADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVF 236
Query: 321 STLMGLGSFPGTDELSLQMLGMHGTVYAN-YAVDKS----DLLLAFGVRFD-DRVTGKLE 374
+ GL G + M G + N Y+ K+ DL+L G RF + G +
Sbjct: 237 ADYEGLSMLSGLPD------AMRGGLVQNLYSFAKADAAPDLVLMLGARFGLNTGHGSGQ 290
Query: 375 AFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAE--GRFDFSAWR 432
A+++ +D D+ E+G+ + + + AD+ ++ + + +DA R D+ A
Sbjct: 291 LIPHSAQVIQVDPDACELGRLQGIALGIVADVGGTIEALAQAT-AQDAAWPDRGDWCAKV 349
Query: 433 EELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTN-GEAIISTGVGQHQMWAAQFYKYRR 491
+L +++ + + E ++ P +A QV+ + + G +++ G + +W ++ +
Sbjct: 350 TDLAQERYASIAAKSSSEHALHPFHASQVIAKHVDAGVTVVADGALTY-LWLSEVMSRVK 408
Query: 492 PRQWLTSGGLGAMGFGLPAAIGAAVANPDA--IIVDIDGDGSFIMNVQELATIKVEKLPI 549
P +L G LG+MG G A+GA VA+ +A + + GDGS ++ E T+ ++LP+
Sbjct: 409 PGGFLCHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGDGSVGYSIGEFDTLVRKQLPL 468
Query: 550 KILLLNNQHLGMVMQWEDRFYKANR 574
++++NNQ G + ++ NR
Sbjct: 469 IVIIMNNQSWGATLHFQQLAVGPNR 493
>pdb|2UZ1|B Chain B, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
pdb|2UZ1|C Chain C, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
Length = 563
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 139/505 (27%), Positives = 252/505 (49%), Gaps = 37/505 (7%)
Query: 90 GADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS 149
G +++V L + GV +F G I QA +++ + RHE AAEGYAR+
Sbjct: 6 GGELVVRTLIKAGVEHLFGLHGAHIDTIFQACL-DHDVPIIDTRHEAAAGHAAEGYARAG 64
Query: 150 GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQE-TPIVEVTRS 208
K G+ + T+G G TN V+ +A+A LD P++ +TG R T+ Q V +
Sbjct: 65 AKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAAP 124
Query: 209 ITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDI------QQQLAVPNWNQPI 262
ITK + V+ + IPR+V +A A S GPVL+D+P DI + + +P+ +
Sbjct: 125 ITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWDILMNQIDEDSVIIPD----L 180
Query: 263 KLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEE--LRKFVELTGIPVA 320
L + +R P L+Q + L+ ++++PV+ +G ++ + L FV TG+PV
Sbjct: 181 VLSAHGAR----PDPADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVF 236
Query: 321 STLMGLGSFPGTDELSLQMLGMHGTVYAN-YAVDKS----DLLLAFGVRFD-DRVTGKLE 374
+ GL G + M G + N Y+ K+ DL+L G RF + G +
Sbjct: 237 ADYEGLSMLSGLPD------AMRGGLVQNLYSFAKADAAPDLVLMLGARFGLNTGHGSGQ 290
Query: 375 AFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAE--GRFDFSAWR 432
A+++ +D D+ E+G+ + + + AD+ ++ + + +DA R D+ A
Sbjct: 291 LIPHSAQVIQVDPDACELGRLQGIALGIVADVGGTIEALAQAT-AQDAAWPDRGDWCAKV 349
Query: 433 EELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTN-GEAIISTGVGQHQMWAAQFYKYRR 491
+L +++ + + E ++ P +A QV+ + + G +++ G + +W ++ +
Sbjct: 350 TDLAQERYASIAAKSSSEHALHPFHASQVIAKHVDAGVTVVADGALTY-LWLSEVMSRVK 408
Query: 492 PRQWLTSGGLGAMGFGLPAAIGAAVANPDA--IIVDIDGDGSFIMNVQELATIKVEKLPI 549
P +L G LG+MG G A+GA VA+ +A + + GDGS ++ E T+ ++LP+
Sbjct: 409 PGGFLCHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGDGSVGYSIGEFDTLVRKQLPL 468
Query: 550 KILLLNNQHLGMVMQWEDRFYKANR 574
++++NNQ G + ++ NR
Sbjct: 469 IVIIMNNQSWGATLHFQQLAVGPNR 493
>pdb|3IAE|A Chain A, Structure Of Benzaldehyde Lyase A28s Mutant With
Benzoylphosphonate
pdb|3IAE|B Chain B, Structure Of Benzaldehyde Lyase A28s Mutant With
Benzoylphosphonate
Length = 570
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 139/505 (27%), Positives = 252/505 (49%), Gaps = 37/505 (7%)
Query: 90 GADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS 149
G +++V L + GV +F G I QA +++ + RHE AAEGYAR+
Sbjct: 6 GGELVVRTLIKAGVEHLFGLHGSHIDTIFQACL-DHDVPIIDTRHEAAAGHAAEGYARAG 64
Query: 150 GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQE-TPIVEVTRS 208
K G+ + T+G G TN V+ +A+A LD P++ +TG R T+ Q V +
Sbjct: 65 AKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAAP 124
Query: 209 ITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDI------QQQLAVPNWNQPI 262
ITK + V+ + IPR+V +A A S GPVL+D+P DI + + +P+ +
Sbjct: 125 ITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWDILMNQIDEDSVIIPD----L 180
Query: 263 KLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEE--LRKFVELTGIPVA 320
L + +R P L+Q + L+ ++++PV+ +G ++ + L FV TG+PV
Sbjct: 181 VLSAHGAR----PDPADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVF 236
Query: 321 STLMGLGSFPGTDELSLQMLGMHGTVYAN-YAVDKS----DLLLAFGVRFD-DRVTGKLE 374
+ GL G + M G + N Y+ K+ DL+L G RF + G +
Sbjct: 237 ADYEGLSMLSGLPD------AMRGGLVQNLYSFAKADAAPDLVLMLGARFGLNTGHGSGQ 290
Query: 375 AFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAE--GRFDFSAWR 432
A+++ +D D+ E+G+ + + + AD+ ++ + + +DA R D+ A
Sbjct: 291 LIPHSAQVIQVDPDACELGRLQGIALGIVADVGGTIEALAQAT-AQDAAWPDRGDWCAKV 349
Query: 433 EELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTN-GEAIISTGVGQHQMWAAQFYKYRR 491
+L +++ + + E ++ P +A QV+ + + G +++ G + +W ++ +
Sbjct: 350 TDLAQERYASIAAKSSSEHALHPFHASQVIAKHVDAGVTVVADGALTY-LWLSEVMSRVK 408
Query: 492 PRQWLTSGGLGAMGFGLPAAIGAAVANPDA--IIVDIDGDGSFIMNVQELATIKVEKLPI 549
P +L G LG+MG G A+GA VA+ +A + + GDGS ++ E T+ ++LP+
Sbjct: 409 PGGFLCHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGDGSVGYSIGEFDTLVRKQLPL 468
Query: 550 KILLLNNQHLGMVMQWEDRFYKANR 574
++++NNQ G + ++ NR
Sbjct: 469 IVIIMNNQSWGATLHFQQLAVGPNR 493
>pdb|3IAF|A Chain A, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
pdb|3IAF|B Chain B, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
pdb|3IAF|C Chain C, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
pdb|3IAF|D Chain D, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
Length = 570
Score = 153 bits (386), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 139/505 (27%), Positives = 252/505 (49%), Gaps = 37/505 (7%)
Query: 90 GADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS 149
G +++V L + GV +F G I QA +++ + RHE AAEGYAR+
Sbjct: 6 GGELVVRTLIKAGVEHLFGLHGXHIDTIFQACL-DHDVPIIDTRHEAAAGHAAEGYARAG 64
Query: 150 GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQE-TPIVEVTRS 208
K G+ + T+G G TN V+ +A+A LD P++ +TG R T+ Q V +
Sbjct: 65 AKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAAP 124
Query: 209 ITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDI------QQQLAVPNWNQPI 262
ITK + V+ + IPR+V +A A S GPVL+D+P DI + + +P+ +
Sbjct: 125 ITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWDILMNQIDEDSVIIPD----L 180
Query: 263 KLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEE--LRKFVELTGIPVA 320
L + +R P L+Q + L+ ++++PV+ +G ++ + L FV TG+PV
Sbjct: 181 VLSAHGAR----PDPADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVF 236
Query: 321 STLMGLGSFPGTDELSLQMLGMHGTVYAN-YAVDKS----DLLLAFGVRFD-DRVTGKLE 374
+ GL G + M G + N Y+ K+ DL+L G RF + G +
Sbjct: 237 ADYEGLSMLSGLPD------AMRGGLVQNLYSFAKADAAPDLVLMLGARFGLNTGHGSGQ 290
Query: 375 AFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAE--GRFDFSAWR 432
A+++ +D D+ E+G+ + + + AD+ ++ + + +DA R D+ A
Sbjct: 291 LIPHSAQVIQVDPDACELGRLQGIALGIVADVGGTIEALAQAT-AQDAAWPDRGDWCAKV 349
Query: 433 EELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTN-GEAIISTGVGQHQMWAAQFYKYRR 491
+L +++ + + E ++ P +A QV+ + + G +++ G + +W ++ +
Sbjct: 350 TDLAQERYASIAAKSSSEHALHPFHASQVIAKHVDAGVTVVADGALTY-LWLSEVMSRVK 408
Query: 492 PRQWLTSGGLGAMGFGLPAAIGAAVANPDA--IIVDIDGDGSFIMNVQELATIKVEKLPI 549
P +L G LG+MG G A+GA VA+ +A + + GDGS ++ E T+ ++LP+
Sbjct: 409 PGGFLCHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGDGSVGYSIGEFDTLVRKQLPL 468
Query: 550 KILLLNNQHLGMVMQWEDRFYKANR 574
++++NNQ G + ++ NR
Sbjct: 469 IVIIMNNQSWGATLHFQQLAVGPNR 493
>pdb|2AG1|A Chain A, Crystal Structure Of Benzaldehyde Lyase (Bal)- Semet
pdb|2AG1|B Chain B, Crystal Structure Of Benzaldehyde Lyase (Bal)- Semet
pdb|2AG1|C Chain C, Crystal Structure Of Benzaldehyde Lyase (Bal)- Semet
pdb|2AG1|D Chain D, Crystal Structure Of Benzaldehyde Lyase (Bal)- Semet
Length = 563
Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 136/501 (27%), Positives = 247/501 (49%), Gaps = 29/501 (5%)
Query: 90 GADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS 149
G +++V L + GV +F G I QA +++ + RHE AAEGYAR+
Sbjct: 6 GGELVVRTLIKAGVEHLFGLHGAHIDTIFQACL-DHDVPIIDTRHEAAAGHAAEGYARAG 64
Query: 150 GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQE-TPIVEVTRS 208
K G+ + T+G G TN V+ +A+A LD P++ +TG R T+ Q V
Sbjct: 65 AKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAXAAP 124
Query: 209 ITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDI------QQQLAVPNWNQPI 262
ITK + V + IPR+V +A A S GPVL+D+P DI + + +P+ +
Sbjct: 125 ITKWAHRVXATEHIPRLVXQAIRAALSAPRGPVLLDLPWDILXNQIDEDSVIIPD----L 180
Query: 263 KLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEE--LRKFVELTGIPVA 320
L + +R P L+Q + L+ ++++PV+ +G ++ + L FV TG+PV
Sbjct: 181 VLSAHGAR----PDPADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVF 236
Query: 321 STLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKS-DLLLAFGVRFD-DRVTGKLEAFAS 378
+ GL G + G+ +Y+ D + DL+L G RF + G +
Sbjct: 237 ADYEGLSXLSGLPDAXRG--GLVQNLYSFAKADAAPDLVLXLGARFGLNTGHGSGQLIPH 294
Query: 379 RAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAE--GRFDFSAWREELD 436
A+++ +D D+ E+G+ + + + AD+ ++ + + +DA R D+ A +L
Sbjct: 295 SAQVIQVDPDACELGRLQGIALGIVADVGGTIEALAQAT-AQDAAWPDRGDWCAKVTDLA 353
Query: 437 EQKVKYPLSFKTFEESIPPQYAIQVLDELTN-GEAIISTGVGQHQMWAAQFYKYRRPRQW 495
+++ + + E ++ P +A QV+ + + G +++ G + +W ++ +P +
Sbjct: 354 QERYASIAAKSSSEHALHPFHASQVIAKHVDAGVTVVADGALTY-LWLSEVXSRVKPGGF 412
Query: 496 LTSGGLGAMGFGLPAAIGAAVANPDA--IIVDIDGDGSFIMNVQELATIKVEKLPIKILL 553
L G LG+ G G A+GA VA+ +A + + GDGS ++ E T+ ++LP+ +++
Sbjct: 413 LCHGYLGSXGVGFGTALGAQVADLEAGRRTILVTGDGSVGYSIGEFDTLVRKQLPLIVII 472
Query: 554 LNNQHLGMVMQWEDRFYKANR 574
NNQ G + ++ NR
Sbjct: 473 XNNQSWGATLHFQQLAVGPNR 493
>pdb|1UPB|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPB|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPB|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPB|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|E Chain E, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|F Chain F, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|2IHV|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHV|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHV|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHV|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHU|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
pdb|2IHU|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
pdb|2IHU|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
pdb|2IHU|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
Length = 573
Score = 142 bits (357), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 139/524 (26%), Positives = 231/524 (44%), Gaps = 35/524 (6%)
Query: 127 IRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQ 186
I VL RHE AA+ AR +G+P C AT GPG TNL +G+A ++LD P++A+ Q
Sbjct: 49 IDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGMTNLSTGIATSVLDRSPVIALAAQ 108
Query: 187 VPRR-MIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDV 245
+ D Q V + ++K+ + +I +V A A + GP I +
Sbjct: 109 SESHDIFPNDTHQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFISL 168
Query: 246 PKD-------IQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVG 298
P D I + P N P K G ++ + + +Q L++E+K PVL VG
Sbjct: 169 PVDLLGSSEGIDTTVPNPPANTPAKPVGVVA----DGWQKAADQAAALLAEAKHPVLVVG 224
Query: 299 GGCLNSSE--ELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKS- 355
+ S +R E IPV +T + G P EL+ + + N+ ++
Sbjct: 225 AAAIRSGAVPAIRALAERLNIPVITTYIAKGVLPVGHELNYGAVTGYMDGILNFPALQTM 284
Query: 356 ----DLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALK 411
DL+L G + + + + K V I I + +P V V D+ ++
Sbjct: 285 FAPVDLVLTVGYDYAEDLRPSMWQKGIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVE 344
Query: 412 GINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTN---- 467
A+ R D R + E + +T+E+ + I ++ +
Sbjct: 345 HFETATASFGAKQRHDIEPLRARIAE----FLADPETYEDGMRVHQVIDSMNTVMEEAAE 400
Query: 468 -GEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDI 526
GE I + +G + + F + +P +LTS G + G+G+PAAIGA +A PD I
Sbjct: 401 PGEGTIVSDIGFFRHYGVLFARADQPFGFLTSAGCSSFGYGIPAAIGAQMARPDQPTFLI 460
Query: 527 DGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRES 586
GDG F N +L TI LPI +++NN G++ ++ N H DP+ +
Sbjct: 461 AGDGGFHSNSSDLETIARLNLPIVTVVVNNDTNGLIELYQ------NIGHHRSHDPAVKF 514
Query: 587 EIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDV 630
+ + AEA G+ + T + +L AA++ + P+L++V
Sbjct: 515 GGV-DFVALAEANGVDATRATNREELLAALRKGAELGRPFLIEV 557
>pdb|1UPA|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus (semet Structure)
pdb|1UPA|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus (semet Structure)
pdb|1UPA|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus (semet Structure)
pdb|1UPA|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus (semet Structure)
pdb|2IHT|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Semet Structure
pdb|2IHT|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Semet Structure
pdb|2IHT|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Semet Structure
pdb|2IHT|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Semet Structure
Length = 573
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 139/524 (26%), Positives = 226/524 (43%), Gaps = 35/524 (6%)
Query: 127 IRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQ 186
I VL RHE AA+ AR +G+P C AT GPG TNL +G+A ++LD P++A+ Q
Sbjct: 49 IDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGXTNLSTGIATSVLDRSPVIALAAQ 108
Query: 187 VPRR-MIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDV 245
+ D Q V + +K+ + +I +V A A + GP I +
Sbjct: 109 SESHDIFPNDTHQCLDSVAIVAPXSKYAVELQRPHEITDLVDSAVNAAXTEPVGPSFISL 168
Query: 246 PKD-------IQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVG 298
P D I + P N P K G ++ + + +Q L++E+K PVL VG
Sbjct: 169 PVDLLGSSEGIDTTVPNPPANTPAKPVGVVA----DGWQKAADQAAALLAEAKHPVLVVG 224
Query: 299 GGCLNSSE--ELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKS- 355
+ S +R E IPV +T + G P EL+ + + N+ ++
Sbjct: 225 AAAIRSGAVPAIRALAERLNIPVITTYIAKGVLPVGHELNYGAVTGYXDGILNFPALQTX 284
Query: 356 ----DLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALK 411
DL+L G + + + K V I I + +P V V D+ ++
Sbjct: 285 FAPVDLVLTVGYDYAEDLRPSXWQKGIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVE 344
Query: 412 GINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTN---- 467
A+ R D R + E + +T+E+ I + +
Sbjct: 345 HFETATASFGAKQRHDIEPLRARIAE----FLADPETYEDGXRVHQVIDSXNTVXEEAAE 400
Query: 468 -GEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDI 526
GE I + +G + + F + +P +LTS G + G+G+PAAIGA A PD I
Sbjct: 401 PGEGTIVSDIGFFRHYGVLFARADQPFGFLTSAGCSSFGYGIPAAIGAQXARPDQPTFLI 460
Query: 527 DGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRES 586
GDG F N +L TI LPI +++NN G++ ++ N H DP+ +
Sbjct: 461 AGDGGFHSNSSDLETIARLNLPIVTVVVNNDTNGLIELYQ------NIGHHRSHDPAVKF 514
Query: 587 EIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDV 630
+ + AEA G+ + T + +L AA++ + P+L++V
Sbjct: 515 GGV-DFVALAEANGVDATRATNREELLAALRKGAELGRPFLIEV 557
>pdb|2C31|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase In Complex
With The Cofactor Derivative Thiamin-2-Thiazolone
Diphosphate And Adenosine Diphosphate
pdb|2C31|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase In Complex
With The Cofactor Derivative Thiamin-2-Thiazolone
Diphosphate And Adenosine Diphosphate
pdb|2JI6|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp And Oxalyl-Coa
pdb|2JI6|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp And Oxalyl-Coa
pdb|2JI7|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase With Covalent
Reaction Intermediate
pdb|2JI7|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase With Covalent
Reaction Intermediate
pdb|2JI8|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Formyl-Coa
pdb|2JI8|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Formyl-Coa
pdb|2JI9|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp
pdb|2JI9|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp
pdb|2JIB|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Coenzyme-A
pdb|2JIB|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Coenzyme-A
Length = 568
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 144/569 (25%), Positives = 242/569 (42%), Gaps = 61/569 (10%)
Query: 90 GADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS 149
G +L++AL+ + ++ G + + + + + R RHEQ +AA
Sbjct: 12 GFHVLIDALKMNDIDTMYGVVGIPITNLAR-MWQDDGQRFYSFRHEQHAGYAASIAGYIE 70
Query: 150 GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDA--FQETPIVEVTR 207
GKPG+C+ S PG N V+ LA A + P++ ++G R ++ ++E + V R
Sbjct: 71 GKPGVCLTVSAPGFLNGVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVAR 130
Query: 208 SITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVP-KDIQQQLAVPNWNQPIKLPG 266
K ++ + + DIP + A A SGRPG V +D+P K Q ++V N+ + P
Sbjct: 131 PHCKASFRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAKLFGQTISVEEANKLLFKP- 189
Query: 267 YMSRLPKE-PSEVHLEQIVRLISESKKPVLYVGGGC--LNSSEELRKFVELTGIPVASTL 323
+ P + P+E + + LI +K+PV+ +G G +E+R VE TGIP
Sbjct: 190 -IDPAPAQIPAEDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEETGIPFLPMG 248
Query: 324 MGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVT-GKLEAFASR-AK 381
M G P S +A+ + D+ + G R + + GK + + K
Sbjct: 249 MAKGLLPDNHPQSA-------AATRAFALAQCDVCVLIGARLNWLMQHGKGKTWGDELKK 301
Query: 382 IVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGG---KDAEGRFDFSAWREELDEQ 438
V IDI + E+ N+ V D+K A+ + + L G DAE A + ++D
Sbjct: 302 YVQIDIQANEMDSNQPIAAPVVGDIKSAVSLLRKALKGAPKADAEWT---GALKAKVDGN 358
Query: 439 KVK---------------YPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWA 483
K K Y S + + I +++E N A+ +T
Sbjct: 359 KAKLAGKMTAETPSGMMNYSNSLGVVRDFMLANPDISLVNEGAN--ALDNT--------- 407
Query: 484 AQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIK 543
+PR+ L SG G MG G+ + AA +I ++GD +F + EL TI
Sbjct: 408 RMIVDMLKPRKRLDSGTWGVMGIGMGYCVAAAAVTGKPVIA-VEGDSAFGFSGMELETIC 466
Query: 544 VEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPG 603
LP+ ++++NN + YK N A G S EA G G
Sbjct: 467 RYNLPVTVIIMNNGGI----------YKGNEADPQPGVISCTRLTRGRYDMMMEAFGGKG 516
Query: 604 AQVTRKADLRAAIQTMLDTPGPYLLDVIF 632
A+L+AA++ + + P L++ +
Sbjct: 517 YVANTPAELKAALEEAVASGKPCLINAMI 545
>pdb|2Q27|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli
pdb|2Q27|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli
pdb|2Q28|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With
Adenosine-5`-Diphosphate
pdb|2Q28|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With
Adenosine-5`-Diphosphate
pdb|2Q29|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With Acetyl Coenzyme A
pdb|2Q29|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With Acetyl Coenzyme A
Length = 564
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 135/562 (24%), Positives = 251/562 (44%), Gaps = 40/562 (7%)
Query: 86 QPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGY 145
Q G I+VEAL++ + ++ G ++ + ++ IR + RHEQ +AA
Sbjct: 6 QMTDGMHIIVEALKQNNIDTIYGVVGIPVTDMARH-AQAEGIRYIGFRHEQSAGYAAAAS 64
Query: 146 ARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDA--FQETPIV 203
+ KPGIC+ S PG N ++ LA+A ++ P++ I+G R ++ ++E +
Sbjct: 65 GFLTQKPGICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQM 124
Query: 204 EVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPN--WNQP 261
+ K + V D+ + A ++ SGRPG V +D+P ++ +
Sbjct: 125 NAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPGGVYLDLPANVLAATMEKDEALTTI 184
Query: 262 IKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNS--SEELRKFVELTGIPV 319
+K+ L P V + L++++++P++ +G G S E+LR+F+E IP
Sbjct: 185 VKVENPSPALLPCPKSV--TSAISLLAKAERPLIILGKGAAYSQADEQLREFIESAQIPF 242
Query: 320 ASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASR 379
M G T LS ++A+ +D+++ G R + + + +A+
Sbjct: 243 LPMSMAKGILEDTHPLSA-------AAARSFALANADVVMLVGARLNWLLAHGKKGWAAD 295
Query: 380 AKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFS-AWREELD-- 436
+ + +DI+ EI N+ V V D+ +++G+ L + F WR+ L+
Sbjct: 296 TQFIQLDIEPQEIDSNRPIAVPVVGDIASSMQGMLAEL----KQNTFTTPLVWRDILNIH 351
Query: 437 EQKVKYPLSFKTFEESIPPQY---AIQVLDELTNGEAIISTGVGQHQMWAAQ-FYKYRRP 492
+Q+ + K ++ P Y V D L + I G + + A+ +P
Sbjct: 352 KQQNAQKMHEKLSTDTQPLNYFNALSAVRDVLRENQDIYLVNEGANTLDNARNIIDMYKP 411
Query: 493 RQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKIL 552
R+ L G G MG G+ AIGA+V + ++ I+GD +F + E+ TI LP+ I+
Sbjct: 412 RRRLDCGTWGVMGIGMGYAIGASVTSGSPVVA-IEGDSAFGFSGMEIETICRYNLPVTIV 470
Query: 553 LLNNQHLGMVMQWEDRFYKANRAH-TYLGDPSRESEI-FPNMLKFAEACGIPGAQVTRKA 610
+ NN + Y+ + + G PS + K +A G VT
Sbjct: 471 IFNNGGI----------YRGDGVDLSGAGAPSPTDLLHHARYDKLMDAFRGVGYNVTTTD 520
Query: 611 DLRAAIQTMLDTPGPYLLDVIF 632
+LR A+ T + + P +++V+
Sbjct: 521 ELRHALTTGIQSRKPTIINVVI 542
>pdb|1PO7|A Chain A, High Resolution Structure Of E28a Mutant Benzoylformate
Decarboxylase From Pseudomonas Putida
pdb|1Q6Z|A Chain A, High Resolution Structure Of E28a Mutant Benzoylformate
Decarboxylase From Pseudomonas Putida Complexed With
Thiamin Thiazolone Diphosphate
Length = 528
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 125/552 (22%), Positives = 224/552 (40%), Gaps = 57/552 (10%)
Query: 96 EALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGIC 155
E L RQG+ VF PG ++ + + R +L E + A+GYA++S KP
Sbjct: 10 ELLRRQGIDTVFGNPGSNALPFLKDFPE--DFRYILALQEACVVGIADGYAQASRKPAFI 67
Query: 156 IATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDA-FQETPIVEVTRSITKHNY 214
S G N + L++A PL+ GQ R MIG +A + R + K +Y
Sbjct: 68 NLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSY 127
Query: 215 LVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMS-RLPK 273
++P + A +A+ GPV + VP D + A P + S RL
Sbjct: 128 EPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSSVRL-- 185
Query: 274 EPSEVHLEQIVRLISESKKPVLYVG---------GGCLNSSEELRKFVELTGIPVASTLM 324
++ L+ +V+ ++ + P + +G C+ +E L+ V + P A
Sbjct: 186 --NDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVA--PSAPRC- 240
Query: 325 GLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGV---RFDDRVTGKLEAFASRAK 381
FP T + L G + ++ D++L G R+ G+ +R
Sbjct: 241 ---PFP-TRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTR-- 294
Query: 382 IVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSA---WREELDEQ 438
++ + D E + ++ AD+ + ++ +++ + +A + + D
Sbjct: 295 LISVTCDPLEAARAPMGD-AIVADIGAMASALANLV--EESSRQLPTAAPEPAKVDQDAG 351
Query: 439 KVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTS 498
++ F T + + P+ AI L+E T+ A QMW Q R P +
Sbjct: 352 RLHPETVFDTLND-MAPENAI-YLNESTSTTA---------QMW--QRLNMRNPGSYYFC 398
Query: 499 GGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQH 558
G +GF LPAAIG +A P+ ++ + GDGS ++ L T +P +++NN
Sbjct: 399 AA-GGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGT 457
Query: 559 LGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQT 618
G ++W +A P + + A+ G+ + L+ ++Q
Sbjct: 458 YG-ALRWFAGVLEAENV------PGLDVPGI-DFRALAKGYGVQALKADNLEQLKGSLQE 509
Query: 619 MLDTPGPYLLDV 630
L GP L++V
Sbjct: 510 ALSAKGPVLIEV 521
>pdb|2FN3|A Chain A, High Resolution Structure Of S26a Mutant Of Benzoylformate
Decarboxylase From Pseudomonas Putida Complexed With
Thiamine Thiazolone Diphosphate
Length = 528
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 125/552 (22%), Positives = 223/552 (40%), Gaps = 57/552 (10%)
Query: 96 EALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGIC 155
E L RQG+ VF PG + + + R +L E + A+GYA++S KP
Sbjct: 10 ELLRRQGIDTVFGNPGANELPFLKDFPE--DFRYILALQEACVVGIADGYAQASRKPAFI 67
Query: 156 IATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDA-FQETPIVEVTRSITKHNY 214
S G N + L++A PL+ GQ R MIG +A + R + K +Y
Sbjct: 68 NLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSY 127
Query: 215 LVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMS-RLPK 273
++P + A +A+ GPV + VP D + A P + S RL
Sbjct: 128 EPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSSVRL-- 185
Query: 274 EPSEVHLEQIVRLISESKKPVLYVG---------GGCLNSSEELRKFVELTGIPVASTLM 324
++ L+ +V+ ++ + P + +G C+ +E L+ V + P A
Sbjct: 186 --NDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVA--PSAPRC- 240
Query: 325 GLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGV---RFDDRVTGKLEAFASRAK 381
FP T + L G + ++ D++L G R+ G+ +R
Sbjct: 241 ---PFP-TRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTR-- 294
Query: 382 IVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSA---WREELDEQ 438
++ + D E + ++ AD+ + ++ +++ + +A + + D
Sbjct: 295 LISVTCDPLEAARAPMGD-AIVADIGAMASALANLV--EESSRQLPTAAPEPAKVDQDAG 351
Query: 439 KVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTS 498
++ F T + + P+ AI L+E T+ A QMW Q R P +
Sbjct: 352 RLHPETVFDTLND-MAPENAI-YLNESTSTTA---------QMW--QRLNMRNPGSYYFC 398
Query: 499 GGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQH 558
G +GF LPAAIG +A P+ ++ + GDGS ++ L T +P +++NN
Sbjct: 399 AA-GGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGT 457
Query: 559 LGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQT 618
G ++W +A P + + A+ G+ + L+ ++Q
Sbjct: 458 YG-ALRWFAGVLEAENV------PGLDVPGI-DFRALAKGYGVQALKADNLEQLKGSLQE 509
Query: 619 MLDTPGPYLLDV 630
L GP L++V
Sbjct: 510 ALSAKGPVLIEV 521
>pdb|1YNO|A Chain A, High Resolution Structure Of Benzoylformate Decarboxylase
From Pseudomonas Putida Complexed With Thiamine
Thiazolone Diphosphate
Length = 527
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 125/552 (22%), Positives = 223/552 (40%), Gaps = 57/552 (10%)
Query: 96 EALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGIC 155
E L RQG+ VF PG + + + R +L E + A+GYA++S KP
Sbjct: 9 ELLRRQGIDTVFGNPGSNELPFLKDFPE--DFRYILALQEACVVGIADGYAQASRKPAFI 66
Query: 156 IATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDA-FQETPIVEVTRSITKHNY 214
S G N + L++A PL+ GQ R MIG +A + R + K +Y
Sbjct: 67 NLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSY 126
Query: 215 LVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMS-RLPK 273
++P + A +A+ GPV + VP D + A P + S RL
Sbjct: 127 EPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSSVRL-- 184
Query: 274 EPSEVHLEQIVRLISESKKPVLYVG---------GGCLNSSEELRKFVELTGIPVASTLM 324
++ L+ +V+ ++ + P + +G C+ +E L+ V + P A
Sbjct: 185 --NDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVA--PSAPRC- 239
Query: 325 GLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGV---RFDDRVTGKLEAFASRAK 381
FP T + L G + ++ D++L G R+ G+ +R
Sbjct: 240 ---PFP-TRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTR-- 293
Query: 382 IVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSA---WREELDEQ 438
++ + D E + ++ AD+ + ++ +++ + +A + + D
Sbjct: 294 LISVTCDPLEAARAPMGD-AIVADIGAMASALANLV--EESSRQLPTAAPEPAKVDQDAG 350
Query: 439 KVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTS 498
++ F T + + P+ AI L+E T+ A QMW Q R P +
Sbjct: 351 RLHPETVFDTLND-MAPENAI-YLNESTSTTA---------QMW--QRLNMRNPGSYYFC 397
Query: 499 GGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQH 558
G +GF LPAAIG +A P+ ++ + GDGS ++ L T +P +++NN
Sbjct: 398 AA-GGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGT 456
Query: 559 LGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQT 618
G ++W +A P + + A+ G+ + L+ ++Q
Sbjct: 457 YG-ALRWFAGVLEAENV------PGLDVPGI-DFRALAKGYGVQALKADNLEQLKGSLQE 508
Query: 619 MLDTPGPYLLDV 630
L GP L++V
Sbjct: 509 ALSAKGPVLIEV 520
>pdb|3FZN|A Chain A, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|B Chain B, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|C Chain C, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|D Chain D, Intermediate Analogue In Benzoylformate Decarboxylase
Length = 534
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 125/552 (22%), Positives = 223/552 (40%), Gaps = 57/552 (10%)
Query: 96 EALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGIC 155
E L RQG+ VF PG + + + R +L E + A+GYA++S KP
Sbjct: 10 ELLRRQGIDTVFGNPGSNELPFLKDFPE--DFRYILALQEACVVGIADGYAQASRKPAFI 67
Query: 156 IATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDA-FQETPIVEVTRSITKHNY 214
S G N + L++A PL+ GQ R MIG +A + R + K +Y
Sbjct: 68 NLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSY 127
Query: 215 LVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMS-RLPK 273
++P + A +A+ GPV + VP D + A P + S RL
Sbjct: 128 EPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSSVRL-- 185
Query: 274 EPSEVHLEQIVRLISESKKPVLYVG---------GGCLNSSEELRKFVELTGIPVASTLM 324
++ L+ +V+ ++ + P + +G C+ +E L+ V + P A
Sbjct: 186 --NDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVA--PSAPRC- 240
Query: 325 GLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGV---RFDDRVTGKLEAFASRAK 381
FP T + L G + ++ D++L G R+ G+ +R
Sbjct: 241 ---PFP-TRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTR-- 294
Query: 382 IVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSA---WREELDEQ 438
++ + D E + ++ AD+ + ++ +++ + +A + + D
Sbjct: 295 LISVTCDPLEAARAPMGD-AIVADIGAMASALANLV--EESSRQLPTAAPEPAKVDQDAG 351
Query: 439 KVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTS 498
++ F T + + P+ AI L+E T+ A QMW Q R P +
Sbjct: 352 RLHPETVFDTLND-MAPENAI-YLNESTSTTA---------QMW--QRLNMRNPGSYYFC 398
Query: 499 GGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQH 558
G +GF LPAAIG +A P+ ++ + GDGS ++ L T +P +++NN
Sbjct: 399 AA-GGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGT 457
Query: 559 LGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQT 618
G ++W +A P + + A+ G+ + L+ ++Q
Sbjct: 458 YG-ALRWFAGVLEAENV------PGLDVPGI-DFRALAKGYGVQALKADNLEQLKGSLQE 509
Query: 619 MLDTPGPYLLDV 630
L GP L++V
Sbjct: 510 ALSAKGPVLIEV 521
>pdb|1MCZ|A Chain A, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|B Chain B, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|C Chain C, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|D Chain D, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|E Chain E, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|F Chain F, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|G Chain G, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|H Chain H, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|I Chain I, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|J Chain J, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|K Chain K, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|L Chain L, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|M Chain M, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|N Chain N, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|O Chain O, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|P Chain P, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1BFD|A Chain A, Benzoylformate Decarboxylase From Pseudomonas Putida
pdb|3FSJ|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Inhibitor Mbp
Length = 528
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 125/552 (22%), Positives = 223/552 (40%), Gaps = 57/552 (10%)
Query: 96 EALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGIC 155
E L RQG+ VF PG + + + R +L E + A+GYA++S KP
Sbjct: 10 ELLRRQGIDTVFGNPGSNELPFLKDFPE--DFRYILALQEACVVGIADGYAQASRKPAFI 67
Query: 156 IATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDA-FQETPIVEVTRSITKHNY 214
S G N + L++A PL+ GQ R MIG +A + R + K +Y
Sbjct: 68 NLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSY 127
Query: 215 LVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMS-RLPK 273
++P + A +A+ GPV + VP D + A P + S RL
Sbjct: 128 EPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSSVRL-- 185
Query: 274 EPSEVHLEQIVRLISESKKPVLYVG---------GGCLNSSEELRKFVELTGIPVASTLM 324
++ L+ +V+ ++ + P + +G C+ +E L+ V + P A
Sbjct: 186 --NDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVA--PSAPRC- 240
Query: 325 GLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGV---RFDDRVTGKLEAFASRAK 381
FP T + L G + ++ D++L G R+ G+ +R
Sbjct: 241 ---PFP-TRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTR-- 294
Query: 382 IVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSA---WREELDEQ 438
++ + D E + ++ AD+ + ++ +++ + +A + + D
Sbjct: 295 LISVTCDPLEAARAPMGD-AIVADIGAMASALANLV--EESSRQLPTAAPEPAKVDQDAG 351
Query: 439 KVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTS 498
++ F T + + P+ AI L+E T+ A QMW Q R P +
Sbjct: 352 RLHPETVFDTLND-MAPENAI-YLNESTSTTA---------QMW--QRLNMRNPGSYYFC 398
Query: 499 GGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQH 558
G +GF LPAAIG +A P+ ++ + GDGS ++ L T +P +++NN
Sbjct: 399 AA-GGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGT 457
Query: 559 LGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQT 618
G ++W +A P + + A+ G+ + L+ ++Q
Sbjct: 458 YG-ALRWFAGVLEAENV------PGLDVPGI-DFRALAKGYGVQALKADNLEQLKGSLQE 509
Query: 619 MLDTPGPYLLDV 630
L GP L++V
Sbjct: 510 ALSAKGPVLIEV 521
>pdb|1PI3|A Chain A, E28q Mutant Benzoylformate Decarboxylase From Pseudomonas
Putida
Length = 528
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 125/552 (22%), Positives = 223/552 (40%), Gaps = 57/552 (10%)
Query: 96 EALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGIC 155
E L RQG+ VF PG + + + R +L E + A+GYA++S KP
Sbjct: 10 ELLRRQGIDTVFGNPGSNQLPFLKDFPE--DFRYILALQEACVVGIADGYAQASRKPAFI 67
Query: 156 IATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDA-FQETPIVEVTRSITKHNY 214
S G N + L++A PL+ GQ R MIG +A + R + K +Y
Sbjct: 68 NLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSY 127
Query: 215 LVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMS-RLPK 273
++P + A +A+ GPV + VP D + A P + S RL
Sbjct: 128 EPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSSVRL-- 185
Query: 274 EPSEVHLEQIVRLISESKKPVLYVG---------GGCLNSSEELRKFVELTGIPVASTLM 324
++ L+ +V+ ++ + P + +G C+ +E L+ V + P A
Sbjct: 186 --NDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVA--PSAPRC- 240
Query: 325 GLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGV---RFDDRVTGKLEAFASRAK 381
FP T + L G + ++ D++L G R+ G+ +R
Sbjct: 241 ---PFP-TRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTR-- 294
Query: 382 IVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSA---WREELDEQ 438
++ + D E + ++ AD+ + ++ +++ + +A + + D
Sbjct: 295 LISVTCDPLEAARAPMGD-AIVADIGAMASALANLV--EESSRQLPTAAPEPAKVDQDAG 351
Query: 439 KVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTS 498
++ F T + + P+ AI L+E T+ A QMW Q R P +
Sbjct: 352 RLHPETVFDTLND-MAPENAI-YLNESTSTTA---------QMW--QRLNMRNPGSYYFC 398
Query: 499 GGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQH 558
G +GF LPAAIG +A P+ ++ + GDGS ++ L T +P +++NN
Sbjct: 399 AA-GGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGT 457
Query: 559 LGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQT 618
G ++W +A P + + A+ G+ + L+ ++Q
Sbjct: 458 YG-ALRWFAGVLEAENV------PGLDVPGI-DFRALAKGYGVQALKADNLEQLKGSLQE 509
Query: 619 MLDTPGPYLLDV 630
L GP L++V
Sbjct: 510 ALSAKGPVLIEV 521
>pdb|3F6B|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Pyridyl Inhibitor Paa
pdb|3F6E|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Pyridyl Inhibitor 3-Pkb
Length = 525
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 125/552 (22%), Positives = 223/552 (40%), Gaps = 57/552 (10%)
Query: 96 EALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGIC 155
E L RQG+ VF PG + + + R +L E + A+GYA++S KP
Sbjct: 9 ELLRRQGIDTVFGNPGSNELPFLKDFPE--DFRYILALQEACVVGIADGYAQASRKPAFI 66
Query: 156 IATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDA-FQETPIVEVTRSITKHNY 214
S G N + L++A PL+ GQ R MIG +A + R + K +Y
Sbjct: 67 NLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSY 126
Query: 215 LVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMS-RLPK 273
++P + A +A+ GPV + VP D + A P + S RL
Sbjct: 127 EPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSSVRL-- 184
Query: 274 EPSEVHLEQIVRLISESKKPVLYVG---------GGCLNSSEELRKFVELTGIPVASTLM 324
++ L+ +V+ ++ + P + +G C+ +E L+ V + P A
Sbjct: 185 --NDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVA--PSAPRC- 239
Query: 325 GLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGV---RFDDRVTGKLEAFASRAK 381
FP T + L G + ++ D++L G R+ G+ +R
Sbjct: 240 ---PFP-TRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTR-- 293
Query: 382 IVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSA---WREELDEQ 438
++ + D E + ++ AD+ + ++ +++ + +A + + D
Sbjct: 294 LISVTCDPLEAARAPMGD-AIVADIGAMASALANLV--EESSRQLPTAAPEPAKVDQDAG 350
Query: 439 KVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTS 498
++ F T + + P+ AI L+E T+ A QMW Q R P +
Sbjct: 351 RLHPETVFDTLND-MAPENAI-YLNESTSTTA---------QMW--QRLNMRNPGSYYFC 397
Query: 499 GGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQH 558
G +GF LPAAIG +A P+ ++ + GDGS ++ L T +P +++NN
Sbjct: 398 AA-GGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGT 456
Query: 559 LGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQT 618
G ++W +A P + + A+ G+ + L+ ++Q
Sbjct: 457 YG-ALRWFAGVLEAENV------PGLDVPGI-DFRALAKGYGVQALKADNLEQLKGSLQE 508
Query: 619 MLDTPGPYLLDV 630
L GP L++V
Sbjct: 509 ALSAKGPVLIEV 520
>pdb|2FWN|A Chain A, Phosphorylation Of An Active Site Serine In A Thdp-
Dependent Enzyme By Phosphonate Inactivation
Length = 528
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 125/552 (22%), Positives = 223/552 (40%), Gaps = 57/552 (10%)
Query: 96 EALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGIC 155
E L RQG+ VF PG + + + R +L E + A+GYA++S KP
Sbjct: 10 ELLRRQGIDTVFGNPGXNELPFLKDFPE--DFRYILALQEACVVGIADGYAQASRKPAFI 67
Query: 156 IATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDA-FQETPIVEVTRSITKHNY 214
S G N + L++A PL+ GQ R MIG +A + R + K +Y
Sbjct: 68 NLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSY 127
Query: 215 LVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMS-RLPK 273
++P + A +A+ GPV + VP D + A P + S RL
Sbjct: 128 EPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSSVRL-- 185
Query: 274 EPSEVHLEQIVRLISESKKPVLYVG---------GGCLNSSEELRKFVELTGIPVASTLM 324
++ L+ +V+ ++ + P + +G C+ +E L+ V + P A
Sbjct: 186 --NDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVA--PSAPRC- 240
Query: 325 GLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGV---RFDDRVTGKLEAFASRAK 381
FP T + L G + ++ D++L G R+ G+ +R
Sbjct: 241 ---PFP-TRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTR-- 294
Query: 382 IVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSA---WREELDEQ 438
++ + D E + ++ AD+ + ++ +++ + +A + + D
Sbjct: 295 LISVTCDPLEAARAPMGD-AIVADIGAMASALANLV--EESSRQLPTAAPEPAKVDQDAG 351
Query: 439 KVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTS 498
++ F T + + P+ AI L+E T+ A QMW Q R P +
Sbjct: 352 RLHPETVFDTLND-MAPENAI-YLNESTSTTA---------QMW--QRLNMRNPGSYYFC 398
Query: 499 GGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQH 558
G +GF LPAAIG +A P+ ++ + GDGS ++ L T +P +++NN
Sbjct: 399 AA-GGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGT 457
Query: 559 LGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQT 618
G ++W +A P + + A+ G+ + L+ ++Q
Sbjct: 458 YG-ALRWFAGVLEAENV------PGLDVPGI-DFRALAKGYGVQALKADNLEQLKGSLQE 509
Query: 619 MLDTPGPYLLDV 630
L GP L++V
Sbjct: 510 ALSAKGPVLIEV 521
>pdb|2V3W|A Chain A, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|B Chain B, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|C Chain C, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|D Chain D, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
Length = 528
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 126/559 (22%), Positives = 223/559 (39%), Gaps = 71/559 (12%)
Query: 96 EALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGIC 155
E L RQG+ VF PG + + + R +L E + A+GYA++S KP
Sbjct: 10 ELLRRQGIDTVFGNPGSNELPFLKDFPE--DFRYILALQEACVVGIADGYAQASRKPAFI 67
Query: 156 IATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDA-FQETPIVEVTRSITKHNY 214
S G N + L++A PL+ GQ R MIG +A + R + K +Y
Sbjct: 68 NLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSY 127
Query: 215 LVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMS-RLPK 273
++P + A +A+ GPV + VP D + A P + S RL
Sbjct: 128 EPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSSVRL-- 185
Query: 274 EPSEVHLEQIVRLISESKKPVLYVG---------GGCLNSSEELRKFVELTGIPVASTLM 324
++ L+ +V+ ++ + P + +G C+ +E L+ V + P A
Sbjct: 186 --NDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVA--PSAPRC- 240
Query: 325 GLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGV---RFDDRVTGKLEAFASRAK 381
FP T + L G + ++ D++L G R+ G+ +R
Sbjct: 241 ---PFP-TRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTR-- 294
Query: 382 IVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSA---WREELDEQ 438
++ + D E + ++ AD+ + ++ +++ + +A + + D
Sbjct: 295 LISVTCDPLEAARAPMGD-AIVADIGAMASALANLV--EESSRQLPTAAPEPAKVDQDAG 351
Query: 439 KVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTS 498
++ F T + + P+ AI L+E T+ A QMW Q R P +
Sbjct: 352 RLHPETVFDTLND-MAPENAI-YLNESTSTTA---------QMW--QRLNMRNPGSYYFC 398
Query: 499 GGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQH 558
G +GF LPAAIG +A P+ ++ + GDGS ++ L T +P +++NN
Sbjct: 399 AA-GGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGT 457
Query: 559 LGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNM-------LKFAEACGIPGAQVTRKAD 611
G R++ E+E P + A+ G+ +
Sbjct: 458 YGAA-----RWFAG----------VLEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQ 502
Query: 612 LRAAIQTMLDTPGPYLLDV 630
L+ ++Q L GP L++V
Sbjct: 503 LKGSLQEALSAKGPVLIEV 521
>pdb|2VBF|A Chain A, The Holostructure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis
pdb|2VBF|B Chain B, The Holostructure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis
pdb|2VBG|A Chain A, The Complex Structure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis With 2r-1-
Hydroxyethyl-Deazathdp
pdb|2VBG|B Chain B, The Complex Structure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis With 2r-1-
Hydroxyethyl-Deazathdp
Length = 570
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 109/495 (22%), Positives = 199/495 (40%), Gaps = 74/495 (14%)
Query: 92 DILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGK 151
D L++ L G+ ++F PG +++ + +++ + +E + A+GYAR+ K
Sbjct: 29 DYLLDRLHELGIEEIFGVPGDYNLQFLDQIISREDMKWIGNANELNASYMADGYARTK-K 87
Query: 152 PGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAF-------------- 197
+ T G G + ++GLA + +++P+V I G ++ F
Sbjct: 88 AAAFLTTFGVGELSAINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFM 147
Query: 198 -QETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVP 256
P+ +T N +I R++ + PV I++P D+ A
Sbjct: 148 KMHEPVTAARTLLTAENATY----EIDRVLSQLL-----KERKPVYINLPVDV----AAA 194
Query: 257 NWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEE--LRKFVEL 314
+P S +V L +I + ++KPV+ G ++ E + +FV
Sbjct: 195 KAEKPALSLEKESSTTNTTEQVILSKIEESLKNAQKPVVIAGHEVISFGLEKTVTQFVSE 254
Query: 315 TGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYA----VDKSDLLLAFGVRFDDRVT 370
T +P+ T + G DE LG++ + + V+ +D +L GV+ D T
Sbjct: 255 TKLPI--TTLNFGK-SAVDESLPSFLGIYNGKLSEISLKNFVESADFILMLGVKLTDSST 311
Query: 371 GKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSA 430
G K++ ++ID I N+++ FDF A
Sbjct: 312 GAFTHHLDENKMISLNIDEGII--------------------FNKVVED------FDFRA 345
Query: 431 WREELDEQK-VKYPLSF--KTFEESIPPQYAI------QVLDELTNGEAIISTGVGQHQM 481
L E K ++Y + K +EE IP + Q ++ LT I G
Sbjct: 346 VVSSLSELKGIEYEGQYIDKQYEEFIPSSAPLSQDRLWQAVESLTQSNETIVAEQGTSFF 405
Query: 482 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELAT 541
A+ + R ++ G++G+ PAA+G+ +A+ ++ + GDGS + VQEL
Sbjct: 406 GASTIFLKSNSR-FIGQPLWGSIGYTFPAALGSQIADKESRHLLFIGDGSLQLTVQELGL 464
Query: 542 IKVEKLPIKILLLNN 556
EKL ++NN
Sbjct: 465 SIREKLNPICFIINN 479
>pdb|2VJY|A Chain A, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|B Chain B, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|C Chain C, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|D Chain D, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VK4|A Chain A, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|B Chain B, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|C Chain C, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|D Chain D, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
Length = 563
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 122/490 (24%), Positives = 215/490 (43%), Gaps = 55/490 (11%)
Query: 94 LVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPG 153
L E L++ V +F PG ++ + + +R +E +AA+GYAR G
Sbjct: 10 LFERLKQVEVQTIFGLPGDFNLSLLDNIYEVPGMRWAGNANELNAAYAADGYARLKGMSC 69
Query: 154 ICIATSGPGATNLVSGLADALLDSVPLV------AITGQVPRRM----IGTDAFQETPIV 203
I I T G G + ++G+A + + V ++ +++ Q + + +G F T
Sbjct: 70 I-ITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSVSSQAKQLLLHHTLGNGDF--TVFH 126
Query: 204 EVTRSITKHNYLVLDVD----DIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWN 259
++ +I++ ++ D++ +I R +R ++ S R PV + +P ++ L VP
Sbjct: 127 RMSSNISETTAMITDINTAPAEIDRCIRTTYV---SQR--PVYLGLPANL-VDLTVP--A 178
Query: 260 QPIKLPGYMSRLPKEP--SEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELT 315
+ P +S P +P E +E +++LI E+K PV+ C ++ E +K ++LT
Sbjct: 179 SLLDTPIDLSLKPNDPEAEEEVIENVLQLIKEAKNPVILADACCSRHDAKAETKKLIDLT 238
Query: 316 GIPVASTLMGLGSFPGTDELSLQMLGMH-GTVYA---NYAVDKSDLLLAFGVRFDDRVTG 371
P T MG GS DE + G++ GT+ + AV+ +DL+L+ G D TG
Sbjct: 239 QFPAFVTPMGKGSI---DEKHPRFGGVYVGTLSSPAVKEAVESADLVLSVGALLSDFNTG 295
Query: 372 KLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAW 431
IV D +I P V +K AL+ + + A+G
Sbjct: 296 SFSYSYKTKNIVEFHSDYTKIRSATFPGVQ----MKFALQKLLTKVADA-AKGYKPVPVP 350
Query: 432 REELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIIS-TGVGQHQMWAAQFYKYR 490
E + V K +E + QV + L G+ +I+ TG + F
Sbjct: 351 SEPEHNEAVADSTPLK--QEWV----WTQVGEFLREGDVVITETGTSAFGINQTHF---P 401
Query: 491 RPRQWLTSGGLGAMGFGLPAAIGAAVA----NPDAIIVDIDGDGSFIMNVQELATIKVEK 546
++ G++GF A +GAA A +P ++ GDGS + VQE++T+
Sbjct: 402 NNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWG 461
Query: 547 LPIKILLLNN 556
L + +LNN
Sbjct: 462 LKPYLFVLNN 471
>pdb|2VBI|A Chain A, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|B Chain B, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|C Chain C, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|D Chain D, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|E Chain E, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|F Chain F, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|G Chain G, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|H Chain H, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
Length = 566
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 140/587 (23%), Positives = 230/587 (39%), Gaps = 116/587 (19%)
Query: 94 LVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPG 153
L E L + G+ FA G ++ + L + +++ + +E F+AEGYARS+G
Sbjct: 9 LAERLVQIGLKHHFAVAGDYNLVLLDQLLLNKDMKQIYCCNELNCGFSAEGYARSNGAAA 68
Query: 154 ICIATSGPGATNLVSGLADALLDSVPLVAI----------TGQVPRRMIGTDAFQETPIV 203
+ T GA + ++ L A +++P++ I TG + IG + +
Sbjct: 69 -AVVTFSVGAISAMNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQ--L 125
Query: 204 EVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIK 263
E+ R +T + D P + A R P +D+ +I ++P
Sbjct: 126 EMARQVTCAAESITDAHSAPAKIDHVIRTALRERK-PAYLDIACNIA--------SEPCV 176
Query: 264 LPGYMSRLPKEPSEVH------LEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTG- 316
PG +S L EP H ++ V L+ +S PV+ +G L ++ L L
Sbjct: 177 RPGPVSSLLSEPEIDHTSLKAAVDATVALLEKSASPVMLLGSK-LRAANALAATETLADK 235
Query: 317 IPVASTLMGL--GSFPGTDELSLQMLGMHGTVYAN----YAVDKSDLLLAFGVRFDDRVT 370
+ A T+M G FP E G++ +N V+ SD LL F+D T
Sbjct: 236 LQCAVTIMAAAKGFFP---EDHAGFRGLYWGEVSNPGVQELVETSDALLCIAPVFNDYST 292
Query: 371 GKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKD---AEGR-- 425
+G + P KG N IL D +GR
Sbjct: 293 ---------------------VGWSAWP------------KGPNVILAEPDRVTVDGRAY 319
Query: 426 --FDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDE--LTNGE------AIISTG 475
F A+ + L E+ P S + + S+P DE LTN E A++++
Sbjct: 320 DGFTLRAFLQALAEKAPARPASAQ--KSSVPTCSLTATSDEAGLTNDEIVRHINALLTSN 377
Query: 476 VGQHQMWAAQFYKYRR---PR--------QWLTSGGLGAMGFGLPAAIGAAVANPDAIIV 524
++ R PR QW G +G+ +P+A G A+ + D V
Sbjct: 378 TTLVAETGDSWFNAMRMTLPRGARVELEMQW------GHIGWSVPSAFGNAMGSQDRQHV 431
Query: 525 DIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSR 584
+ GDGSF + QE+A + +LP+ I L+NN+ + + D Y + Y G
Sbjct: 432 VMVGDGSFQLTAQEVAQMVRYELPVIIFLINNRGYVIEIAIHDGPYNYIKNWDYAG---- 487
Query: 585 ESEIFPNMLKFAEACGIPGAQVTRKADLRAAI-QTMLDTPGPYLLDV 630
+ E G+ G + T +L AI + +T GP L++
Sbjct: 488 ----LMEVFNAGEGHGL-GLKATTPKELTEAIARAKANTRGPTLIEC 529
>pdb|1OVM|A Chain A, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
pdb|1OVM|B Chain B, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
pdb|1OVM|C Chain C, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
pdb|1OVM|D Chain D, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
Length = 552
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 110/497 (22%), Positives = 196/497 (39%), Gaps = 63/497 (12%)
Query: 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYA 146
P AD L++ L G +F PG +++ + S +I V +E +AA+GYA
Sbjct: 4 PYCVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYA 63
Query: 147 RSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITG----------QVPRRMIGTDA 196
R G + + T G G + ++G+A + + VP++ I G ++ +G
Sbjct: 64 RCKGFAAL-LTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGE 122
Query: 197 FQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVP 256
F+ ++ IT ++ + + I R + RPG +++ P D+ ++ A P
Sbjct: 123 FRH--FYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRERRPGYLML--PADVAKKAATP 178
Query: 257 NWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNS--SEELRKFVEL 314
N L + + + ++ SK+ L L L+K+V+
Sbjct: 179 PVN---ALTHKQAHADSACLKAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVKE 235
Query: 315 TGIPVASTLMGLGSFPGTDELSLQMLGMHG----TVYANYAVDKSDLLLAFGVRFDDRVT 370
+ A+ LMG G F DE G + T A++ +D +L G RF D +T
Sbjct: 236 VPMAHATMLMGKGIF---DERQAGFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTDTLT 292
Query: 371 GKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSA 430
+ A+ + + QPH + D+ +N+ +
Sbjct: 293 AGFTHQLTPAQTIEV-----------QPHAARVGDVWFTGIPMNQAIET----------- 330
Query: 431 WREELDEQKVKYPLS--------FKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMW 482
EL +Q V L F + S+ + + L II G
Sbjct: 331 -LVELCKQHVHAGLMSSSSGAIPFPQPDGSLTQENFWRTLQTFIRPGDIILADQGTSAFG 389
Query: 483 AAQFYKYRRPR--QWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELA 540
A R P ++ G++G+ L AA GA A P+ ++ + GDG+ + +QEL
Sbjct: 390 AIDL---RLPADVNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVLTGDGAAQLTIQELG 446
Query: 541 TIKVEKLPIKILLLNNQ 557
++ +K IL+LNN+
Sbjct: 447 SMLRDKQHPIILVLNNE 463
>pdb|1QPB|A Chain A, Pyruvate Decarboyxlase From Yeast (Form B) Complexed With
Pyruvamide
pdb|1QPB|B Chain B, Pyruvate Decarboyxlase From Yeast (Form B) Complexed With
Pyruvamide
Length = 563
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 120/490 (24%), Positives = 206/490 (42%), Gaps = 55/490 (11%)
Query: 94 LVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPG 153
L E L++ V VF PG ++ + + +R +E +AA+GYAR G
Sbjct: 10 LFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMSC 69
Query: 154 ICIATSGPGATNLVSGLADALLDSVPLV------AITGQVPRRM----IGTDAFQETPIV 203
I I T G G + ++G+A + + V ++ +I+ Q + + +G F T
Sbjct: 70 I-ITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDF--TVFH 126
Query: 204 EVTRSITKHNYLVLDV----DDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWN 259
++ +I++ ++ D+ +I R +R ++ PV + +P ++ L VP
Sbjct: 127 RMSANISETTAMITDIATAPAEIDRCIRTTYVTQR-----PVYLGLPANL-VDLNVP--A 178
Query: 260 QPIKLPGYMSRLPK--EPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELT 315
+ ++ P MS P E + ++ I+ LI ++K PV+ C + E +K ++LT
Sbjct: 179 KLLQTPIDMSLKPNDAESEKEVIDTILVLIKDAKNPVILADACCSRHDVKAETKKLIDLT 238
Query: 316 GIPVASTLMGLGSFPGTDELSLQMLGMH-GTVY---ANYAVDKSDLLLAFGVRFDDRVTG 371
P T MG GS DE + G++ GT+ AV+ +DL+L+ G D TG
Sbjct: 239 QFPAFVTPMGKGSI---DEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTG 295
Query: 372 KLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAW 431
IV D +I P V + L+ L I DA + A
Sbjct: 296 SFSYSYKTKNIVEFHSDHMKIRNATFPGVQMKFVLQKLLTAI------ADAAKGYKPVAV 349
Query: 432 REELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIIS-TGVGQHQMWAAQFYKYR 490
P S +E + Q + L G+ +I+ TG + F
Sbjct: 350 PAR-TPANAAVPASTPLKQEWMWNQLG----NFLQEGDVVIAETGTSAFGINQTTF---P 401
Query: 491 RPRQWLTSGGLGAMGFGLPAAIGAAVA----NPDAIIVDIDGDGSFIMNVQELATIKVEK 546
++ G++GF A +GAA A +P ++ GDGS + VQE++T+
Sbjct: 402 NNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWG 461
Query: 547 LPIKILLLNN 556
L + +LNN
Sbjct: 462 LKPYLFVLNN 471
>pdb|2W93|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
pdb|2W93|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
pdb|2W93|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
pdb|2W93|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
Length = 563
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 119/490 (24%), Positives = 206/490 (42%), Gaps = 55/490 (11%)
Query: 94 LVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPG 153
L E L++ V VF PG ++ + + +R +E +AA+GYAR G
Sbjct: 10 LFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMSC 69
Query: 154 ICIATSGPGATNLVSGLADALLDSVPLV------AITGQVPRRM----IGTDAFQETPIV 203
I I T G G + ++G+A + + V ++ +I+ Q + + +G F T
Sbjct: 70 I-ITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLHHTLGNGDF--TVFH 126
Query: 204 EVTRSITKHNYLVLDV----DDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWN 259
++ +I++ ++ D+ +I R +R ++ PV + +P ++ L VP
Sbjct: 127 RMSANISETTAMITDIATAPAEIDRCIRTTYVTQR-----PVYLGLPANL-VDLNVP--A 178
Query: 260 QPIKLPGYMSRLPK--EPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELT 315
+ ++ P MS P E + ++ I+ L+ ++K PV+ C + E +K ++LT
Sbjct: 179 KLLQTPIDMSLKPNDAESEKEVIDTILALVKDAKNPVILADACCSRHDVKAETKKLIDLT 238
Query: 316 GIPVASTLMGLGSFPGTDELSLQMLGMH-GTVY---ANYAVDKSDLLLAFGVRFDDRVTG 371
P T MG GS DE + G++ GT+ AV+ +DL+L+ G D TG
Sbjct: 239 QFPAFVTPMGKGSI---DEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTG 295
Query: 372 KLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAW 431
IV D +I P V + L+ L I DA + A
Sbjct: 296 SFSYSYKTKNIVEFHSDHMKIRNATFPGVQMKFVLQKLLTNI------ADAAKGYKPVAV 349
Query: 432 REELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIIS-TGVGQHQMWAAQFYKYR 490
P S +E + Q + L G+ +I+ TG + F
Sbjct: 350 PAR-TPANAAVPASTPLKQEWMWNQLG----NFLQEGDVVIAETGTSAFGINQTTF---P 401
Query: 491 RPRQWLTSGGLGAMGFGLPAAIGAAVA----NPDAIIVDIDGDGSFIMNVQELATIKVEK 546
++ G++GF A +GAA A +P ++ GDGS + VQE++T+
Sbjct: 402 NNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWG 461
Query: 547 LPIKILLLNN 556
L + +LNN
Sbjct: 462 LKPYLFVLNN 471
>pdb|2NXW|A Chain A, Crystal Structure Of Phenylpyruvate Decarboxylase Of
Azospirillum Brasilense
pdb|2NXW|B Chain B, Crystal Structure Of Phenylpyruvate Decarboxylase Of
Azospirillum Brasilense
pdb|2Q5J|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp
pdb|2Q5J|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp
pdb|2Q5L|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 2-(1- Hydroxyethyl)-3-Deaza-Thdp
pdb|2Q5L|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 2-(1- Hydroxyethyl)-3-Deaza-Thdp
pdb|2Q5O|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And Phenylpyruvate
pdb|2Q5O|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And Phenylpyruvate
pdb|2Q5Q|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And 5-Phenyl-2-Oxo-Valeric Acid
pdb|2Q5Q|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And 5-Phenyl-2-Oxo-Valeric Acid
Length = 565
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 128/567 (22%), Positives = 219/567 (38%), Gaps = 67/567 (11%)
Query: 89 KGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARS 148
K A+ L+ AL+ +G +F PG ++ + + + HE FAA+ AR
Sbjct: 22 KLAEALLRALKDRGAQAMFGIPGDFALPFFKVAEETQILPLHTLSHEPAVGFAADAAARY 81
Query: 149 SGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAF----QETPI-- 202
S G+ T G GA N+V+ +A A + P+V I+G P G Q +
Sbjct: 82 SSTLGVAAVTYGAGAFNMVNAVAGAYAEKSPVVVISG-APGTTEGNAGLLLHHQGRTLDT 140
Query: 203 -VEVTRSITKHNYLVLDVDDIP-RIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQ 260
+V + IT + D P I R L A + PV +++P+++ P +
Sbjct: 141 QFQVFKEITVAQARLDDPAKAPAEIAR--VLGAARAQSRPVYLEIPRNMVNAEVEPVGDD 198
Query: 261 PIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSE-----ELRKFVELT 315
P P + ++ ++++ + + PVL V C+ ++ + +
Sbjct: 199 P-AWP-----VDRDALAACADEVLAAMRSATSPVLMV---CVEVRRYGLEAKVAELAQRL 249
Query: 316 GIPVASTLMGLGSFPGTDELSL-QMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLE 374
G+PV +T MG G L +G+ G V++SD L G D +
Sbjct: 250 GVPVVTTFMGRGLLADAPTPPLGTYIGVAGDAEITRLVEESDGLFLLGAILSDTNFAVSQ 309
Query: 375 AFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGI---NRILGGKDAEGRFDFSAW 431
K +H + +G + + + + L+ + +R GK+
Sbjct: 310 RKIDLRKTIHAFDRAVTLGYHTYADIPLAGLVDALLERLPPSDRTTRGKEPHA------- 362
Query: 432 REELDEQKVKYPLSFKTFEESIPP-QYAIQVLDELTNGEA--IISTGVGQHQMWAAQFYK 488
YP + E I P A V D + G+ +I+ +G A
Sbjct: 363 ----------YPTGLQADGEPIAPMDIARAVNDRVRAGQEPLLIAADMGDCLFTAMDMID 412
Query: 489 YRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLP 548
+ G MGFG+PA IGA + I+ + GDG+F M EL + +
Sbjct: 413 A----GLMAPGYYAGMGFGVPAGIGAQCVSGGKRILTVVGDGAFQMTGWELGNCRRLGID 468
Query: 549 IKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTR 608
++L NN M+ R ++ A L D F +M A G G +V
Sbjct: 469 PIVILFNNASWEML-----RTFQPESAFNDLDDWR-----FADM---AAGMGGDGVRVRT 515
Query: 609 KADLRAAIQTMLDTPGPY-LLDVIFPH 634
+A+L+AA+ T G + L++ + P
Sbjct: 516 RAELKAALDKAFATRGRFQLIEAMIPR 542
>pdb|1PYD|A Chain A, Catalytic Centers In The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase At 2.4 Angstroms
Resolution
pdb|1PYD|B Chain B, Catalytic Centers In The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase At 2.4 Angstroms
Resolution
Length = 556
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 117/494 (23%), Positives = 202/494 (40%), Gaps = 63/494 (12%)
Query: 94 LVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPG 153
L E L++ V VF PG ++ + + +R +E +AA+GYAR G
Sbjct: 10 LFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMSC 69
Query: 154 ICIATSGPGATNLVSGLADALLDSVPLV------AITGQVPRRM----IGTDAFQETPIV 203
I I T G G + ++G+A + + V ++ +I+ Q + + +G F T
Sbjct: 70 I-ITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLHHTLGNGDF--TVFH 126
Query: 204 EVTRSITKHNYLVLDV----DDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWN 259
++ +I++ ++ D+ +I R +R ++ PV + +P ++ L VP
Sbjct: 127 RMSANISETTAMITDIATAPAEIDRCIRTTYVTQR-----PVYLGLPANL-VDLNVP--A 178
Query: 260 QPIKLPGYMSRLPK--EPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELT 315
+ ++ P MS P E + ++ I+ L+ ++K PV+ C + E +K ++LT
Sbjct: 179 KLLQTPIDMSLKPNDAESEKEVIDTILALVKDAKNPVILADACCSRHDVKAETKKLIDLT 238
Query: 316 GIPVASTLMGLGSFPGTDELSLQMLGMHGTVY--------ANYAVDKSDLLLAFGVRFDD 367
P T MG GS + +G VY AV+ +DL+L+ G D
Sbjct: 239 QFPAFVTPMGKGSIS-------EQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSD 291
Query: 368 RVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFD 427
TG IV D +I P V + L+ L I DA +
Sbjct: 292 FNTGSFSYSYKTKNIVEFHSDHMKIRNATFPGVQMKFVLQKLLTNI------ADAAKGYK 345
Query: 428 FSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIIS-TGVGQHQMWAAQF 486
A P S +E + Q + L G+ +I+ TG + F
Sbjct: 346 PVAVPAR-TPANAAVPASTPLKQEWMWNQLG----NFLQEGDVVIAETGTSAFGINQTTF 400
Query: 487 YKYRRPRQWLTSGGLGAMGFGLPAAIGAAVA----NPDAIIVDIDGDGSFIMNVQELATI 542
++ G++GF A +GAA A +P ++ GDGS + VQE++T+
Sbjct: 401 ---PNNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTM 457
Query: 543 KVEKLPIKILLLNN 556
L + +LNN
Sbjct: 458 IRWGLKPYLFVLNN 471
>pdb|1PVD|A Chain A, Crystal Structure Of The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase From The Yeast
Saccharomyces Cerevisiae At 2.3 Angstroms Resolution
pdb|1PVD|B Chain B, Crystal Structure Of The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase From The Yeast
Saccharomyces Cerevisiae At 2.3 Angstroms Resolution
Length = 555
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 117/494 (23%), Positives = 202/494 (40%), Gaps = 63/494 (12%)
Query: 94 LVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPG 153
L E L++ V VF PG ++ + + +R +E +AA+GYAR G
Sbjct: 9 LFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMSC 68
Query: 154 ICIATSGPGATNLVSGLADALLDSVPLV------AITGQVPRRM----IGTDAFQETPIV 203
I I T G G + ++G+A + + V ++ +I+ Q + + +G F T
Sbjct: 69 I-ITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLHHTLGNGDF--TVFH 125
Query: 204 EVTRSITKHNYLVLDV----DDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWN 259
++ +I++ ++ D+ +I R +R ++ PV + +P ++ L VP
Sbjct: 126 RMSANISETTAMITDIATAPAEIDRCIRTTYVTQR-----PVYLGLPANL-VDLNVP--A 177
Query: 260 QPIKLPGYMSRLPK--EPSEVHLEQIVRLISESKKPVLYVGGGC--LNSSEELRKFVELT 315
+ ++ P MS P E + ++ I+ L+ ++K PV+ C + E +K ++LT
Sbjct: 178 KLLQTPIDMSLKPNDAESEKEVIDTILALVKDAKNPVILADACCSRHDVKAETKKLIDLT 237
Query: 316 GIPVASTLMGLGSFPGTDELSLQMLGMHGTVY--------ANYAVDKSDLLLAFGVRFDD 367
P T MG GS + +G VY AV+ +DL+L+ G D
Sbjct: 238 QFPAFVTPMGKGSIS-------EQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSD 290
Query: 368 RVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFD 427
TG IV D +I P V + L+ L I DA +
Sbjct: 291 FNTGSFSYSYKTKNIVEFHSDHMKIRNATFPGVQMKFVLQKLLTNI------ADAAKGYK 344
Query: 428 FSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIIS-TGVGQHQMWAAQF 486
A P S +E + Q + L G+ +I+ TG + F
Sbjct: 345 PVAVPAR-TPANAAVPASTPLKQEWMWNQLG----NFLQEGDVVIAETGTSAFGINQTTF 399
Query: 487 YKYRRPRQWLTSGGLGAMGFGLPAAIGAAVA----NPDAIIVDIDGDGSFIMNVQELATI 542
++ G++GF A +GAA A +P ++ GDGS + VQE++T+
Sbjct: 400 ---PNNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTM 456
Query: 543 KVEKLPIKILLLNN 556
L + +LNN
Sbjct: 457 IRWGLKPYLFVLNN 470
>pdb|2VK1|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
Length = 563
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 119/490 (24%), Positives = 205/490 (41%), Gaps = 55/490 (11%)
Query: 94 LVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPG 153
L E L++ V VF PG ++ + + +R +E +AA+GYAR G
Sbjct: 10 LFERLKQVNVNTVFGLPGAFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMSC 69
Query: 154 ICIATSGPGATNLVSGLADALLDSVPLV------AITGQVPRRM----IGTDAFQETPIV 203
I I T G G + ++G+A + + V ++ +I+ Q + + +G F T
Sbjct: 70 I-ITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDF--TVFH 126
Query: 204 EVTRSITKHNYLVLDV----DDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWN 259
++ +I++ ++ D+ +I R +R ++ PV + +P ++ L VP
Sbjct: 127 RMSANISETTAMITDIATAPAEIDRCIRTTYVTQR-----PVYLGLPANL-VDLNVP--A 178
Query: 260 QPIKLPGYMSRLPK--EPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELT 315
+ ++ P MS P E + ++ I+ L ++K PV+ C + E +K ++LT
Sbjct: 179 KLLQTPIDMSLKPNDAESEKEVIDTILVLDKDAKNPVILADACCSRHDVKAETKKLIDLT 238
Query: 316 GIPVASTLMGLGSFPGTDELSLQMLGMH-GTVY---ANYAVDKSDLLLAFGVRFDDRVTG 371
P T MG GS DE + G++ GT+ AV+ +DL+L+ G D TG
Sbjct: 239 QFPAFVTPMGKGSI---DEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTG 295
Query: 372 KLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAW 431
IV D +I P V + L+ L I DA + A
Sbjct: 296 SFSYSYKTKNIVEFHSDHMKIRNATFPGVQMKFVLQKLLTAI------ADAAKGYKPVAV 349
Query: 432 REELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIIS-TGVGQHQMWAAQFYKYR 490
P S +E + Q + L G+ +I+ TG + F
Sbjct: 350 PAR-TPANAAVPASTPLKQEWMWNQLG----NFLQEGDVVIAETGTSAFGINQTTF---P 401
Query: 491 RPRQWLTSGGLGAMGFGLPAAIGAAVA----NPDAIIVDIDGDGSFIMNVQELATIKVEK 546
++ G++GF A +GAA A +P ++ GDGS + VQE++T+
Sbjct: 402 NNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWG 461
Query: 547 LPIKILLLNN 556
L + +LNN
Sbjct: 462 LKPYLFVLNN 471
>pdb|2VK8|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
pdb|2VK8|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
pdb|2VK8|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
pdb|2VK8|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
Length = 563
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 118/487 (24%), Positives = 201/487 (41%), Gaps = 49/487 (10%)
Query: 94 LVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPG 153
L E L++ V VF PG ++ + + +R +E +AA+GYAR G
Sbjct: 10 LFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMSC 69
Query: 154 ICIATSGPGATNLVSGLADALLDSVPLV------AITGQVPRRM----IGTDAFQETPIV 203
I I T G G + ++G+A + + V ++ +I+ Q + + +G F T
Sbjct: 70 I-ITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDF--TVFH 126
Query: 204 EVTRSITKHNYLVLDV----DDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWN 259
++ +I++ ++ D+ +I R +R ++ PV + +P ++ L VP
Sbjct: 127 RMSANISETTAMITDIATAPAEIDRCIRTTYVTQR-----PVYLGLPANL-VDLNVP--A 178
Query: 260 QPIKLPGYMSRLPK--EPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELT 315
+ ++ P MS P E + ++ I+ L ++K PV+ C + E +K ++LT
Sbjct: 179 KLLQTPIDMSLKPNDAESEKEVIDTILVLDKDAKNPVILADACCSRHDVKAETKKLIDLT 238
Query: 316 GIPVASTLMGLGSFPGTDELSLQMLGMH-GTVY---ANYAVDKSDLLLAFGVRFDDRVTG 371
P T MG GS DE + G++ GT+ AV+ +DL+L+ G D TG
Sbjct: 239 QFPAFVTPMGKGSI---DEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTG 295
Query: 372 KLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAW 431
IV D +I P V + L+ L I DA + A
Sbjct: 296 SFSYSYKTKNIVEFHSDHMKIRNATFPGVQMKFVLQKLLTTI------ADAAKGYKPVAV 349
Query: 432 REELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIIS-TGVGQHQMWAAQFYKYR 490
P S +E + Q + L G+ +I+ TG + F
Sbjct: 350 PAR-TPANAAVPASTPLKQEWMWNQLG----NFLQEGDVVIAETGTSAFGINQTTFPNNT 404
Query: 491 RPRQWLTSGGLG-AMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPI 549
+ G +G G L AA A +P ++ GDGS + VQE++T+ L
Sbjct: 405 YGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKP 464
Query: 550 KILLLNN 556
+ +LNN
Sbjct: 465 YLFVLNN 471
>pdb|2WVA|A Chain A, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|B Chain B, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|E Chain E, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|F Chain F, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|V Chain V, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|X Chain X, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|Y Chain Y, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|Z Chain Z, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|A Chain A, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|B Chain B, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|E Chain E, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|F Chain F, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|A Chain A, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|B Chain B, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|E Chain E, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|F Chain F, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|V Chain V, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|X Chain X, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|Y Chain Y, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|Z Chain Z, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
Length = 568
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 126/582 (21%), Positives = 224/582 (38%), Gaps = 68/582 (11%)
Query: 94 LVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPG 153
L E L + G+ FA G ++ + L + N+ V +E F+AEGYAR+ G
Sbjct: 9 LAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAA 68
Query: 154 ICIATSGPGATNLVSGLADALLDSVPLVAITG----------QVPRRMIGTDAFQETPIV 203
+ T GA + + A +++P++ I+G V +G + +
Sbjct: 69 AVV-TYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQ--L 125
Query: 204 EVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIK 263
E+ ++IT + ++ P + A + PV +++ +I + P
Sbjct: 126 EMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKK-PVYLEIACNIA--------SMPCA 176
Query: 264 LPGYMSRLPKEPS------EVHLEQIVRLISESKKPVLYVGGG--CLNSSEELRKFVELT 315
PG S L + + +E+ ++ I+ K + VG + E KF +
Sbjct: 177 APGPASALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADAL 236
Query: 316 GIPVASTLMGLGSFP-------GTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDR 368
G VA+ FP GT + G+ T+ ++D ++A F+D
Sbjct: 237 GGAVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTM------KEADAVIALAPVFNDY 290
Query: 369 VTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDF 428
T K+V + S + + P V + L + +++ G D
Sbjct: 291 STTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVHLKDYLTRLAQKVSKKTGALD------- 343
Query: 429 SAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELT-NGEAIISTG---VGQHQMWAA 484
+ + L+ ++K + + A QV LT N I TG +M
Sbjct: 344 --FFKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLP 401
Query: 485 QFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKV 544
+ QW G +G+ +PAA G AV P+ + + GDGSF + QE+A +
Sbjct: 402 NGARVEYEMQW------GHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVR 455
Query: 545 EKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGA 604
KLP+ I L+NN + + D Y + Y G E+F + G G
Sbjct: 456 LKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAG----LMEVFNGNGGYDSGAG-KGL 510
Query: 605 QVTRKADLRAAIQTML-DTPGPYLLDVIFPHQEHVLPMIPSG 645
+ +L AI+ L +T GP L++ ++ ++ G
Sbjct: 511 KAKTGGELAEAIKVALANTDGPTLIECFIGREDCTEELVKWG 552
>pdb|3OE1|A Chain A, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
pdb|3OE1|B Chain B, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
pdb|3OE1|C Chain C, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
pdb|3OE1|D Chain D, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
Length = 568
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 126/582 (21%), Positives = 224/582 (38%), Gaps = 68/582 (11%)
Query: 94 LVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPG 153
L E L + G+ FA G ++ + L + N+ V +E F+AEGYAR+ G
Sbjct: 9 LAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAA 68
Query: 154 ICIATSGPGATNLVSGLADALLDSVPLVAITG----------QVPRRMIGTDAFQETPIV 203
+ T GA + + A +++P++ I+G V +G + +
Sbjct: 69 AVV-TYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQ--L 125
Query: 204 EVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIK 263
E+ ++IT + ++ P + A + PV +++ +I + P
Sbjct: 126 EMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKK-PVYLEIACNIA--------SMPCA 176
Query: 264 LPGYMSRLPKEPS------EVHLEQIVRLISESKKPVLYVGGG--CLNSSEELRKFVELT 315
PG S L + + +E+ ++ I+ K + VG + E KF +
Sbjct: 177 APGPASALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADAL 236
Query: 316 GIPVASTLMGLGSFP-------GTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDR 368
G VA+ FP GT + G+ T+ ++D ++A F+D
Sbjct: 237 GGAVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTM------KEADAVIALAPVFNDY 290
Query: 369 VTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDF 428
T K+V + S + + P V + L + +++ G D
Sbjct: 291 STTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVHLKDYLTRLAQKVSKKTGALD------- 343
Query: 429 SAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELT-NGEAIISTG---VGQHQMWAA 484
+ + L+ ++K + + A QV LT N I TG +M
Sbjct: 344 --FFKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLP 401
Query: 485 QFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKV 544
+ QW G +G+ +PAA G AV P+ + + GDGSF + QE+A +
Sbjct: 402 NGARVEYEMQW------GHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVR 455
Query: 545 EKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGA 604
KLP+ I L+NN + + D Y + Y G E+F + G G
Sbjct: 456 LKLPVIIFLINNYGYTIDVMIHDGPYNNIKNWDYAG----LMEVFNGNGGYDSGAG-KGL 510
Query: 605 QVTRKADLRAAIQTML-DTPGPYLLDVIFPHQEHVLPMIPSG 645
+ +L AI+ L +T GP L++ ++ ++ G
Sbjct: 511 KAKTGGELAEAIKVALANTDGPTLIECFIGREDCTEELVKWG 552
>pdb|1ZPD|A Chain A, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|B Chain B, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|E Chain E, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|F Chain F, Pyruvate Decarboxylase From Zymomonas Mobilis
Length = 568
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 127/582 (21%), Positives = 227/582 (39%), Gaps = 68/582 (11%)
Query: 94 LVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPG 153
L E L + G+ FA G ++ + L + N+ V +E F+AEGYAR+ G
Sbjct: 9 LAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAA 68
Query: 154 ICIATSGPGATNLVSGLADALLDSVPLVAITG----------QVPRRMIGTDAFQETPIV 203
+ T GA + + A +++P++ I+G V +G + +
Sbjct: 69 AVV-TYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQ--L 125
Query: 204 EVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIK 263
E+ ++IT + ++ P + A + PV +++ +I + P
Sbjct: 126 EMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKK-PVYLEIACNIA--------SMPCA 176
Query: 264 LPGYMSRLPKEPS------EVHLEQIVRLISESKKPVLYVGGG--CLNSSEELRKFVELT 315
PG S L + + +++ ++ I+ K + VG + E KF +
Sbjct: 177 APGPASALFNDEASDEASLNAAVDETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFTDAL 236
Query: 316 GIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYA-------VDKSDLLLAFGVRFDDR 368
G VA+ FP + L + GT + + + ++D ++A F+D
Sbjct: 237 GGAVATMAAAKSFFPEENALYI------GTSWGEVSYPGVEKTMKEADAVIALAPVFNDY 290
Query: 369 VTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDF 428
T K+V + S + + P V LK L + + + K G DF
Sbjct: 291 STTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVH----LKDYLTRLAQKVSKKT--GSLDF 344
Query: 429 SAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELT-NGEAIISTG---VGQHQMWAA 484
+ L+ ++K + + A QV LT N I TG +M
Sbjct: 345 ---FKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLP 401
Query: 485 QFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKV 544
+ QW G +G+ +PAA G AV P+ + + GDGSF + QE+A +
Sbjct: 402 NGARVEYEMQW------GHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVR 455
Query: 545 EKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGA 604
KLP+ I L+NN + + D Y + Y G E+F + ++ G
Sbjct: 456 LKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAG----LMEVFNGNGGY-DSGAAKGL 510
Query: 605 QVTRKADLRAAIQTML-DTPGPYLLDVIFPHQEHVLPMIPSG 645
+ +L AI+ L +T GP L++ ++ ++ G
Sbjct: 511 KAKTGGELAEAIKVALANTDGPTLIECFIGREDCTEELVKWG 552
>pdb|3LQ1|A Chain A, Crystal Structure Of
2-Succinyl-6-Hydroxy-2,4-Cyclohexadiene 1-Carboxylic
Acid Synthase2-Oxoglutarate Decarboxylase From Listeria
Monocytogenes Str. 4b F2365
pdb|3LQ1|B Chain B, Crystal Structure Of
2-Succinyl-6-Hydroxy-2,4-Cyclohexadiene 1-Carboxylic
Acid Synthase2-Oxoglutarate Decarboxylase From Listeria
Monocytogenes Str. 4b F2365
Length = 578
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 110/264 (41%), Gaps = 32/264 (12%)
Query: 94 LVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPG 153
+E L + GV + PG S + + ++ + E+ F A G A++S +P
Sbjct: 17 FIEELVQAGVKEAIISPGSRSTPLALMMAEHPILKIYVDVDERSAGFFALGLAKASKRPV 76
Query: 154 ICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHN 213
+ + TSG A N +A+A L +PL+ +T P + A Q + + S K
Sbjct: 77 VLLCTSGTAAANYFPAVAEANLSQIPLIVLTADRPHELRNVGAPQAMDQLHLYGSHVKDF 136
Query: 214 YLVLDVDDIPRIVR-------EAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPG 266
+ ++ ++R A +A GPV ++ P +++ L PI P
Sbjct: 137 TDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFP--LREPLV------PILEPS 188
Query: 267 YMSRLPKEPSEVHL---------EQIVRLISES--KKPVLYVGGGCLNSSEELRKFVELT 315
+ K+ VH+ I ++++E KK V V G ++ E + V+L
Sbjct: 189 PFTATGKKHHHVHIYYTHEVLDDSSIQKMVTECTGKKGVFVV--GPIDKKELEQPMVDLA 246
Query: 316 ---GIPV-ASTLMGLGSFPGTDEL 335
G P+ A L GL S+ DE+
Sbjct: 247 KKLGWPILADPLSGLRSYGALDEV 270
>pdb|2JLC|A Chain A, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Native Protein
pdb|2JLC|B Chain B, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Native Protein
Length = 577
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 50/111 (45%)
Query: 88 RKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYAR 147
R+ A +++EAL R GV + PG S + A ++ + E+G A G A+
Sbjct: 29 RRWAAVILEALTRHGVRHICIAPGSRSTPLTLAAAENSAFIHHTHFDERGLGHLALGLAK 88
Query: 148 SSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQ 198
S +P I TSG NL L +A L L+ +T P +I A Q
Sbjct: 89 VSKQPVAVIVTSGTAVANLYPALIEAGLTGEKLILLTADRPPELIDCGANQ 139
>pdb|2JLA|A Chain A, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Semet Protein
pdb|2JLA|B Chain B, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Semet Protein
pdb|2JLA|C Chain C, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Semet Protein
pdb|2JLA|D Chain D, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Semet Protein
Length = 558
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 50/111 (45%)
Query: 88 RKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYAR 147
R+ A +++EAL R GV + PG S + A ++ + E+G A G A+
Sbjct: 10 RRWAAVILEALTRHGVRHICIAPGSRSTPLTLAAAENSAFIHHTHFDERGLGHLALGLAK 69
Query: 148 SSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQ 198
S +P I TSG NL L +A L L+ +T P +I A Q
Sbjct: 70 VSKQPVAVIVTSGTAVANLYPALIEAGLTGEKLILLTADRPPELIDCGANQ 120
>pdb|3FLM|A Chain A, Crystal Structure Of Mend From E.Coli
pdb|3FLM|B Chain B, Crystal Structure Of Mend From E.Coli
pdb|3HWW|A Chain A, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Oxoglutarate
pdb|3HWW|D Chain D, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Oxoglutarate
pdb|3HWX|A Chain A, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|B Chain B, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|I Chain I, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|J Chain J, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|R Chain R, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|S Chain S, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|Z Chain Z, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|1 Chain 1, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
Length = 556
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 50/111 (45%)
Query: 88 RKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYAR 147
R+ A +++EAL R GV + PG S + A ++ + E+G A G A+
Sbjct: 8 RRWAAVILEALTRHGVRHICIAPGSRSTLLTLAAAENSAFIHHTHFDERGLGHLALGLAK 67
Query: 148 SSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQ 198
S +P I TSG NL L +A L L+ +T P +I A Q
Sbjct: 68 VSKQPVAVIVTSGTAVANLYPALIEAGLTGEKLILLTADRPPELIDCGANQ 118
>pdb|2X7J|A Chain A, Structure Of The Menaquinone Biosynthesis Protein Mend
From Bacillus Subtilis
pdb|2X7J|B Chain B, Structure Of The Menaquinone Biosynthesis Protein Mend
From Bacillus Subtilis
pdb|2X7J|C Chain C, Structure Of The Menaquinone Biosynthesis Protein Mend
From Bacillus Subtilis
pdb|2X7J|D Chain D, Structure Of The Menaquinone Biosynthesis Protein Mend
From Bacillus Subtilis
Length = 604
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 25/169 (14%)
Query: 94 LVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPG 153
++ G+TD PG S + +I + E+ F A G A++ +P
Sbjct: 37 FIDEFALSGITDAVVCPGSRSTPLAVLCAAHPDISVHVQIDERSAGFFALGLAKAKQRPV 96
Query: 154 ICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKH- 212
+ I TSG A N + +A VP++ +T P + A Q +I +H
Sbjct: 97 LLICTSGTAAANFYPAVVEAHYSRVPIIVLTADRPHELREVGAPQ---------AINQHF 147
Query: 213 ---NYLVLDVD-----DIPRIVREAFLLATSG------RP-GPVLIDVP 246
N++ D + P+++R LA+ RP GPV ++VP
Sbjct: 148 LFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVP 196
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 63/158 (39%), Gaps = 17/158 (10%)
Query: 486 FYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVE 545
F K RP + ++ G + + +A+G + + I GD SF ++ L K
Sbjct: 439 FEKQDRPFRIYSNRGANGIDGVVSSAMGVCEGTKAPVTLVI-GDLSFYHDLNGLLAAKKL 497
Query: 546 KLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIF--PNMLKFAEACGIPG 603
+P+ ++L+NN G+ F T+ D +F P L F A + G
Sbjct: 498 GIPLTVILVNNDGGGIF-----SFLPQASEKTHFED------LFGTPTGLDFKHAAALYG 546
Query: 604 AQVTRKA---DLRAAIQTMLDTPGPYLLDVIFPHQEHV 638
+ A + + A D PG +L+++ Q V
Sbjct: 547 GTYSCPASWDEFKTAYAPQADKPGLHLIEIKTDRQSRV 584
>pdb|3S3J|A Chain A, Transglutaminase 2 In Complex With A Novel Inhibitor
pdb|3S3P|A Chain A, Transglutaminase 2 In Complex With A Novel Inhibitor
pdb|3S3S|A Chain A, Transglutaminase 2 In Complex With A Novel Inhibitor
Length = 694
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 99 ERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQG 137
ER+ +T + YP G+S E +A TR+N++ + + E G
Sbjct: 442 EREDITHTYKYPEGSSEE-REAFTRANHLNKLAEKEETG 479
>pdb|1KV3|A Chain A, Human Tissue Transglutaminase In Gdp Bound Form
pdb|1KV3|B Chain B, Human Tissue Transglutaminase In Gdp Bound Form
pdb|1KV3|C Chain C, Human Tissue Transglutaminase In Gdp Bound Form
pdb|1KV3|D Chain D, Human Tissue Transglutaminase In Gdp Bound Form
pdb|1KV3|E Chain E, Human Tissue Transglutaminase In Gdp Bound Form
pdb|1KV3|F Chain F, Human Tissue Transglutaminase In Gdp Bound Form
pdb|2Q3Z|A Chain A, Transglutaminase 2 Undergoes Large Conformational Change
Upon Activation
Length = 687
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 99 ERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQG 137
ER+ +T + YP G+S E +A TR+N++ + + E G
Sbjct: 435 EREDITHTYKYPEGSSEE-REAFTRANHLNKLAEKEETG 472
>pdb|3LY6|A Chain A, Crystal Structure Of Human Transglutaminase 2 Complex With
Adenosine 5' Triphosphate
pdb|3LY6|B Chain B, Crystal Structure Of Human Transglutaminase 2 Complex With
Adenosine 5' Triphosphate
pdb|3LY6|C Chain C, Crystal Structure Of Human Transglutaminase 2 Complex With
Adenosine 5' Triphosphate
Length = 697
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 99 ERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQG 137
ER+ +T + YP G+S E +A TR+N++ + + E G
Sbjct: 435 EREDITHTYKYPEGSSEE-REAFTRANHLNKLAEKEETG 472
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,252,365
Number of Sequences: 62578
Number of extensions: 876916
Number of successful extensions: 2309
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 2094
Number of HSP's gapped (non-prelim): 109
length of query: 661
length of database: 14,973,337
effective HSP length: 105
effective length of query: 556
effective length of database: 8,402,647
effective search space: 4671871732
effective search space used: 4671871732
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)