Query 048725
Match_columns 661
No_of_seqs 250 out of 1620
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 12:26:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048725.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048725hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4166 Thiamine pyrophosphate 100.0 5E-123 1E-127 939.0 42.5 587 64-661 64-675 (675)
2 COG0028 IlvB Thiamine pyrophos 100.0 2E-111 3E-116 942.2 57.7 542 87-648 1-546 (550)
3 PLN02470 acetolactate synthase 100.0 2E-108 4E-113 937.0 64.3 585 76-661 1-585 (585)
4 PRK08979 acetolactate synthase 100.0 2E-102 5E-107 885.0 62.3 555 87-648 3-561 (572)
5 PRK07979 acetolactate synthase 100.0 3E-102 7E-107 884.7 61.9 566 87-659 3-574 (574)
6 PRK06965 acetolactate synthase 100.0 1E-101 2E-106 881.4 62.4 557 83-648 16-577 (587)
7 TIGR01504 glyox_carbo_lig glyo 100.0 3E-101 6E-106 877.0 61.3 547 87-637 2-559 (588)
8 PRK09107 acetolactate synthase 100.0 4E-101 9E-106 876.6 61.5 551 86-645 9-566 (595)
9 PRK07418 acetolactate synthase 100.0 8E-101 2E-105 878.9 63.8 552 84-645 15-571 (616)
10 PRK06466 acetolactate synthase 100.0 7E-101 2E-105 873.6 62.2 557 87-650 3-565 (574)
11 PRK07789 acetolactate synthase 100.0 5E-100 1E-104 871.9 64.3 561 81-646 24-589 (612)
12 PRK07282 acetolactate synthase 100.0 2E-100 5E-105 867.2 60.0 546 84-645 6-553 (566)
13 PRK08978 acetolactate synthase 100.0 4E-100 8E-105 864.5 60.3 536 88-646 1-538 (548)
14 PRK08527 acetolactate synthase 100.0 5E-100 1E-104 864.7 61.7 550 88-649 3-554 (563)
15 PRK06456 acetolactate synthase 100.0 7E-100 2E-104 866.2 61.9 562 88-660 2-571 (572)
16 PRK06048 acetolactate synthase 100.0 1.3E-99 3E-104 861.2 62.5 543 86-645 6-550 (561)
17 PRK06725 acetolactate synthase 100.0 1.1E-99 2E-104 860.6 61.2 542 87-645 14-557 (570)
18 CHL00099 ilvB acetohydroxyacid 100.0 2.5E-99 5E-104 861.6 62.2 556 82-645 4-567 (585)
19 PRK11269 glyoxylate carboligas 100.0 2.9E-99 6E-104 862.7 61.4 547 87-637 3-560 (591)
20 PRK07710 acetolactate synthase 100.0 4.8E-99 1E-103 858.2 61.5 546 87-647 15-562 (571)
21 PRK08155 acetolactate synthase 100.0 9.6E-99 2E-103 855.1 61.1 541 88-645 13-555 (564)
22 PRK06882 acetolactate synthase 100.0 3.3E-98 7E-103 852.9 61.7 553 87-648 3-561 (574)
23 TIGR00118 acolac_lg acetolacta 100.0 1.4E-97 3E-102 845.0 61.2 547 88-646 1-549 (558)
24 TIGR03457 sulphoacet_xsc sulfo 100.0 1.1E-97 2E-102 848.3 60.2 535 87-636 1-560 (579)
25 TIGR02418 acolac_catab acetola 100.0 2.5E-97 5E-102 839.6 59.8 530 90-637 1-534 (539)
26 PRK08273 thiamine pyrophosphat 100.0 2.6E-97 6E-102 847.0 59.0 533 87-636 2-549 (597)
27 PRK06276 acetolactate synthase 100.0 5.5E-97 1E-101 843.2 61.3 549 88-648 1-557 (586)
28 PRK08617 acetolactate synthase 100.0 2.4E-97 5E-102 842.1 57.8 535 85-637 2-540 (552)
29 PRK08322 acetolactate synthase 100.0 3.9E-97 8E-102 840.4 59.4 529 88-637 1-532 (547)
30 PRK08611 pyruvate oxidase; Pro 100.0 1.2E-96 2E-101 838.3 59.6 530 87-640 3-537 (576)
31 PRK05858 hypothetical protein; 100.0 2.2E-96 5E-101 831.5 60.6 532 84-642 1-538 (542)
32 PRK09124 pyruvate dehydrogenas 100.0 3.1E-96 7E-101 836.2 59.1 529 87-639 2-536 (574)
33 PRK06546 pyruvate dehydrogenas 100.0 2.7E-96 6E-101 835.0 58.1 524 88-636 3-533 (578)
34 PRK08199 thiamine pyrophosphat 100.0 8.3E-96 2E-100 829.9 59.0 528 87-636 7-541 (557)
35 PRK06457 pyruvate dehydrogenas 100.0 5.5E-96 1E-100 829.4 57.0 518 88-638 2-524 (549)
36 TIGR02720 pyruv_oxi_spxB pyruv 100.0 1.4E-95 3E-100 829.2 58.2 528 90-636 1-535 (575)
37 PRK06154 hypothetical protein; 100.0 3.6E-95 8E-100 822.9 58.9 531 85-637 17-559 (565)
38 PRK07064 hypothetical protein; 100.0 4.9E-95 1.1E-99 822.7 58.2 530 87-642 2-536 (544)
39 PRK07524 hypothetical protein; 100.0 1.6E-94 3.5E-99 816.0 58.9 521 89-634 3-530 (535)
40 PRK07525 sulfoacetaldehyde ace 100.0 1.6E-94 3.5E-99 823.2 59.0 536 86-636 4-565 (588)
41 TIGR03254 oxalate_oxc oxalyl-C 100.0 9.2E-94 2E-98 812.6 57.7 528 88-636 3-541 (554)
42 PRK08266 hypothetical protein; 100.0 4E-93 8.6E-98 806.3 59.2 523 87-638 3-530 (542)
43 PRK06112 acetolactate synthase 100.0 6.5E-93 1.4E-97 809.6 58.1 538 86-636 12-563 (578)
44 PRK09259 putative oxalyl-CoA d 100.0 9.7E-93 2.1E-97 806.2 58.9 530 87-637 9-550 (569)
45 PLN02573 pyruvate decarboxylas 100.0 1.3E-93 2.7E-98 811.7 45.8 532 85-643 13-562 (578)
46 PRK08327 acetolactate synthase 100.0 1.8E-91 3.8E-96 794.7 54.5 529 87-634 6-568 (569)
47 TIGR03393 indolpyr_decarb indo 100.0 3.2E-91 7E-96 788.8 44.4 511 89-636 2-530 (539)
48 TIGR03394 indol_phenyl_DC indo 100.0 9.5E-91 2.1E-95 782.0 47.4 513 89-637 1-525 (535)
49 PRK12474 hypothetical protein; 100.0 2.4E-89 5.2E-94 770.0 56.0 503 85-632 2-518 (518)
50 PRK07092 benzoylformate decarb 100.0 3.1E-89 6.7E-94 771.7 56.5 515 87-633 11-530 (530)
51 PRK07586 hypothetical protein; 100.0 5.4E-89 1.2E-93 767.8 56.0 499 88-632 1-514 (514)
52 KOG1185 Thiamine pyrophosphate 100.0 9.9E-88 2.1E-92 695.2 48.7 540 87-639 13-566 (571)
53 PRK07449 2-succinyl-5-enolpyru 100.0 3.3E-89 7.2E-94 778.5 41.0 528 88-637 9-553 (568)
54 PLN02980 2-oxoglutarate decarb 100.0 8E-83 1.7E-87 789.7 44.2 551 73-637 287-893 (1655)
55 COG3960 Glyoxylate carboligase 100.0 1.6E-78 3.6E-83 599.2 30.7 547 87-637 3-560 (592)
56 COG3961 Pyruvate decarboxylase 100.0 2.9E-76 6.2E-81 618.8 38.1 515 86-636 2-538 (557)
57 TIGR00173 menD 2-succinyl-5-en 100.0 3.7E-72 8E-77 616.6 36.2 418 90-516 2-431 (432)
58 KOG1184 Thiamine pyrophosphate 100.0 1.9E-68 4.1E-73 557.3 37.1 520 86-636 2-542 (561)
59 COG3962 Acetolactate synthase 100.0 3E-67 6.6E-72 538.9 43.4 552 87-653 6-591 (617)
60 COG1165 MenD 2-succinyl-6-hydr 100.0 5.1E-60 1.1E-64 502.3 34.7 523 88-637 8-550 (566)
61 cd07039 TPP_PYR_POX Pyrimidine 100.0 2.8E-42 6.1E-47 328.6 18.1 163 89-252 1-163 (164)
62 cd07037 TPP_PYR_MenD Pyrimidin 100.0 4.9E-41 1.1E-45 317.7 17.5 155 93-247 2-162 (162)
63 PF02776 TPP_enzyme_N: Thiamin 100.0 1.8E-39 3.9E-44 312.9 17.3 167 88-254 1-168 (172)
64 cd07038 TPP_PYR_PDC_IPDC_like 100.0 1.1E-37 2.4E-42 296.6 15.9 154 92-247 1-162 (162)
65 cd02013 TPP_Xsc_like Thiamine 100.0 8.8E-37 1.9E-41 300.1 21.6 178 451-636 2-182 (196)
66 cd02006 TPP_Gcl Thiamine pyrop 100.0 1.2E-36 2.6E-41 300.8 22.0 186 452-637 7-198 (202)
67 TIGR03336 IOR_alpha indolepyru 100.0 7.8E-35 1.7E-39 331.4 37.8 495 87-636 4-533 (595)
68 cd02015 TPP_AHAS Thiamine pyro 100.0 1.9E-35 4E-40 288.7 22.6 184 453-643 1-184 (186)
69 cd02010 TPP_ALS Thiamine pyrop 100.0 1.7E-35 3.7E-40 286.0 20.2 173 455-636 1-173 (177)
70 cd02003 TPP_IolD Thiamine pyro 100.0 8.4E-35 1.8E-39 288.0 21.5 189 457-650 3-197 (205)
71 TIGR03297 Ppyr-DeCO2ase phosph 100.0 1.9E-33 4.2E-38 298.3 31.7 324 102-637 1-340 (361)
72 cd02004 TPP_BZL_OCoD_HPCL Thia 100.0 1.3E-33 2.8E-38 272.3 20.0 172 455-633 1-172 (172)
73 cd07035 TPP_PYR_POX_like Pyrim 100.0 5.1E-34 1.1E-38 270.4 16.8 155 92-247 1-155 (155)
74 cd02009 TPP_SHCHC_synthase Thi 100.0 4.6E-34 9.9E-39 275.8 15.3 172 455-633 3-175 (175)
75 cd02014 TPP_POX Thiamine pyrop 100.0 3.7E-33 8E-38 270.5 20.5 175 453-636 2-176 (178)
76 cd02005 TPP_PDC_IPDC Thiamine 100.0 1.7E-32 3.6E-37 266.6 17.6 172 453-637 2-178 (183)
77 cd02002 TPP_BFDC Thiamine pyro 100.0 9.5E-32 2.1E-36 260.9 20.6 177 453-632 1-178 (178)
78 PF02775 TPP_enzyme_C: Thiamin 100.0 7.1E-32 1.5E-36 255.1 15.2 151 475-630 1-153 (153)
79 cd07034 TPP_PYR_PFOR_IOR-alpha 100.0 5.6E-31 1.2E-35 250.9 14.3 152 90-245 1-158 (160)
80 PRK06163 hypothetical protein; 100.0 7.1E-30 1.5E-34 250.4 19.5 162 451-636 11-176 (202)
81 cd02001 TPP_ComE_PpyrDC Thiami 100.0 5.2E-30 1.1E-34 242.5 16.0 154 456-634 2-156 (157)
82 TIGR03846 sulfopy_beta sulfopy 100.0 1.2E-29 2.6E-34 245.4 16.6 162 456-643 2-166 (181)
83 cd06586 TPP_enzyme_PYR Pyrimid 100.0 4.1E-29 8.9E-34 236.3 16.3 154 92-247 1-154 (154)
84 cd02008 TPP_IOR_alpha Thiamine 100.0 1.7E-29 3.7E-34 244.7 12.5 171 446-633 3-177 (178)
85 cd00568 TPP_enzymes Thiamine p 100.0 2.3E-28 5E-33 234.7 20.1 167 458-632 2-168 (168)
86 cd03375 TPP_OGFOR Thiamine pyr 100.0 1.1E-28 2.4E-33 241.7 15.9 176 451-638 3-189 (193)
87 cd03371 TPP_PpyrDC Thiamine py 100.0 6E-28 1.3E-32 235.2 19.3 157 457-637 3-167 (188)
88 cd02018 TPP_PFOR Thiamine pyro 100.0 2.8E-28 6.2E-33 245.8 16.7 187 447-637 5-207 (237)
89 cd03376 TPP_PFOR_porB_like Thi 100.0 1.6E-28 3.5E-33 247.0 12.3 185 448-636 6-203 (235)
90 cd03372 TPP_ComE Thiamine pyro 100.0 1.6E-27 3.5E-32 230.6 18.4 162 456-643 2-165 (179)
91 PRK09628 oorB 2-oxoglutarate-a 99.9 8.4E-27 1.8E-31 238.4 16.0 174 452-636 25-204 (277)
92 TIGR03845 sulfopyru_alph sulfo 99.9 9.5E-27 2.1E-31 219.3 13.0 147 92-249 2-156 (157)
93 PRK11867 2-oxoglutarate ferred 99.9 2.6E-26 5.7E-31 236.3 15.3 176 447-636 17-205 (286)
94 PRK11866 2-oxoacid ferredoxin 99.9 9E-26 2E-30 230.5 17.0 177 447-636 7-195 (279)
95 PRK05778 2-oxoglutarate ferred 99.9 1.1E-25 2.4E-30 232.5 16.5 169 455-636 30-206 (301)
96 PRK11869 2-oxoacid ferredoxin 99.9 2.3E-25 5.1E-30 227.3 16.5 178 448-636 9-196 (280)
97 TIGR02177 PorB_KorB 2-oxoacid: 99.9 1.2E-24 2.5E-29 222.9 16.2 175 450-636 4-189 (287)
98 PF00205 TPP_enzyme_M: Thiamin 99.9 1.1E-24 2.3E-29 202.1 11.5 134 280-413 1-137 (137)
99 COG4231 Indolepyruvate ferredo 99.9 2.1E-20 4.5E-25 202.8 31.5 492 87-630 15-551 (640)
100 PRK09193 indolepyruvate ferred 99.8 4.8E-18 1E-22 200.1 32.5 488 87-629 27-613 (1165)
101 PRK13030 2-oxoacid ferredoxin 99.8 2.1E-17 4.5E-22 195.5 35.2 489 85-629 17-599 (1159)
102 PRK13029 2-oxoacid ferredoxin 99.8 7.9E-16 1.7E-20 181.1 34.4 485 87-629 30-627 (1186)
103 cd02012 TPP_TK Thiamine pyroph 99.7 4.9E-17 1.1E-21 166.6 12.1 121 501-639 104-233 (255)
104 TIGR03181 PDH_E1_alph_x pyruva 99.7 5.1E-17 1.1E-21 172.7 11.5 117 501-636 121-249 (341)
105 cd02000 TPP_E1_PDC_ADC_BCADC T 99.7 2.2E-16 4.8E-21 165.0 13.0 118 500-636 102-231 (293)
106 TIGR03182 PDH_E1_alph_y pyruva 99.7 2.8E-16 6.1E-21 165.4 11.4 119 499-636 107-237 (315)
107 CHL00149 odpA pyruvate dehydro 99.6 8.2E-16 1.8E-20 163.1 11.0 123 492-636 120-262 (341)
108 PRK11865 pyruvate ferredoxin o 99.6 2.1E-14 4.5E-19 147.8 17.5 184 447-636 18-214 (299)
109 PRK05899 transketolase; Review 99.6 2.6E-15 5.7E-20 172.6 9.1 119 501-638 117-253 (624)
110 PRK11864 2-ketoisovalerate fer 99.5 1.2E-13 2.7E-18 142.0 16.4 183 448-636 19-210 (300)
111 PLN02374 pyruvate dehydrogenas 99.5 4.1E-14 8.9E-19 153.4 12.5 118 499-636 191-328 (433)
112 cd02007 TPP_DXS Thiamine pyrop 99.4 9.8E-13 2.1E-17 129.0 11.2 112 500-636 73-193 (195)
113 PRK00945 acetyl-CoA decarbonyl 99.4 1.8E-12 4E-17 122.3 8.9 103 281-386 25-141 (171)
114 PRK05444 1-deoxy-D-xylulose-5- 99.3 3.7E-12 8.1E-17 145.3 11.9 122 501-638 116-247 (580)
115 TIGR00315 cdhB CO dehydrogenas 99.3 3.2E-12 6.8E-17 119.9 9.2 103 281-386 18-133 (162)
116 COG1013 PorB Pyruvate:ferredox 99.3 1.1E-11 2.5E-16 128.0 11.5 177 449-636 17-207 (294)
117 PRK12571 1-deoxy-D-xylulose-5- 99.0 1.2E-09 2.6E-14 125.6 13.2 139 500-639 121-289 (641)
118 cd03377 TPP_PFOR_PNO Thiamine 99.0 3.6E-09 7.9E-14 110.9 14.9 190 445-636 4-270 (365)
119 PLN02790 transketolase 99.0 1.4E-09 3.1E-14 125.3 11.2 119 501-638 104-243 (654)
120 PRK12315 1-deoxy-D-xylulose-5- 99.0 5E-09 1.1E-13 119.4 13.9 130 501-640 112-250 (581)
121 COG1071 AcoA Pyruvate/2-oxoglu 98.9 4.2E-09 9.2E-14 110.3 10.9 118 500-636 134-264 (358)
122 PF00676 E1_dh: Dehydrogenase 98.9 3.6E-09 7.8E-14 110.8 8.9 116 502-636 101-228 (300)
123 PRK08659 2-oxoglutarate ferred 98.9 3.9E-08 8.4E-13 106.1 16.1 158 87-249 6-173 (376)
124 PRK12753 transketolase; Review 98.9 1.5E-08 3.2E-13 117.0 12.5 119 501-638 113-251 (663)
125 PTZ00089 transketolase; Provis 98.8 9.7E-09 2.1E-13 118.6 10.7 117 501-636 115-252 (661)
126 TIGR00232 tktlase_bact transke 98.8 1.4E-08 3E-13 117.2 11.5 119 501-638 109-247 (653)
127 PRK12754 transketolase; Review 98.8 1.7E-08 3.7E-13 115.8 11.8 119 501-638 113-251 (663)
128 COG4032 Predicted thiamine-pyr 98.8 3E-08 6.4E-13 88.2 10.4 161 87-252 3-168 (172)
129 cd02016 TPP_E1_OGDC_like Thiam 98.8 1.5E-08 3.2E-13 102.9 9.3 118 499-635 110-248 (265)
130 PF00456 Transketolase_N: Tran 98.8 1.1E-08 2.4E-13 107.9 8.5 119 501-638 110-248 (332)
131 PLN02269 Pyruvate dehydrogenas 98.8 2.6E-08 5.6E-13 106.4 11.1 115 501-636 137-262 (362)
132 PRK09627 oorA 2-oxoglutarate-a 98.8 8.2E-08 1.8E-12 103.3 15.0 159 87-250 5-173 (375)
133 PRK07119 2-ketoisovalerate fer 98.8 1.2E-07 2.6E-12 101.5 15.3 157 87-249 6-173 (352)
134 TIGR03710 OAFO_sf 2-oxoacid:ac 98.7 2E-07 4.2E-12 106.0 14.4 160 87-251 195-364 (562)
135 TIGR00204 dxs 1-deoxy-D-xylulo 98.7 1.4E-07 3E-12 108.3 12.8 135 501-640 110-281 (617)
136 PRK08366 vorA 2-ketoisovalerat 98.7 4.4E-07 9.5E-12 98.1 15.2 154 87-246 5-165 (390)
137 PRK08367 porA pyruvate ferredo 98.6 8.5E-07 1.8E-11 96.1 16.0 156 87-248 6-170 (394)
138 PRK09622 porA pyruvate flavodo 98.6 5.9E-07 1.3E-11 98.1 14.8 158 87-249 12-177 (407)
139 COG3959 Transketolase, N-termi 98.6 4.3E-07 9.3E-12 87.8 11.3 114 502-633 119-241 (243)
140 cd02017 TPP_E1_EcPDC_like Thia 98.6 3.3E-07 7.2E-12 97.2 11.3 120 502-638 118-322 (386)
141 PF01855 POR_N: Pyruvate flavo 98.6 2.2E-07 4.8E-12 93.3 9.3 151 97-250 2-157 (230)
142 PLN02234 1-deoxy-D-xylulose-5- 98.5 8.7E-07 1.9E-11 100.8 13.9 137 501-641 176-329 (641)
143 COG0021 TktA Transketolase [Ca 98.5 6.5E-07 1.4E-11 98.8 11.4 114 502-634 116-249 (663)
144 PLN02582 1-deoxy-D-xylulose-5- 98.5 1.4E-06 2.9E-11 100.2 14.3 141 501-641 143-328 (677)
145 PF13292 DXP_synthase_N: 1-deo 98.5 4.3E-07 9.2E-12 90.9 7.9 131 500-632 109-270 (270)
146 TIGR02176 pyruv_ox_red pyruvat 98.4 1.7E-06 3.7E-11 105.5 13.1 151 87-243 3-165 (1165)
147 cd02011 TPP_PK Thiamine pyroph 98.4 1.1E-06 2.3E-11 87.2 9.2 102 502-620 62-170 (227)
148 PRK09404 sucA 2-oxoglutarate d 98.4 1.1E-06 2.3E-11 103.6 10.3 116 501-635 313-450 (924)
149 COG1154 Dxs Deoxyxylulose-5-ph 98.4 2E-06 4.3E-11 94.5 11.3 138 502-640 115-286 (627)
150 KOG0225 Pyruvate dehydrogenase 98.3 1.8E-06 3.9E-11 87.7 8.3 117 499-636 162-290 (394)
151 TIGR03186 AKGDH_not_PDH alpha- 98.3 3E-06 6.6E-11 98.8 11.2 120 501-637 188-392 (889)
152 TIGR00239 2oxo_dh_E1 2-oxoglut 98.3 3.2E-06 7E-11 99.2 11.2 118 499-635 312-451 (929)
153 PLN02225 1-deoxy-D-xylulose-5- 98.3 2.3E-06 5E-11 97.7 9.3 135 501-636 188-367 (701)
154 KOG0523 Transketolase [Carbohy 98.2 8.4E-06 1.8E-10 89.2 11.8 117 500-635 116-243 (632)
155 TIGR00759 aceE pyruvate dehydr 98.2 1E-05 2.3E-10 93.4 11.7 119 502-637 189-392 (885)
156 PRK13012 2-oxoacid dehydrogena 98.1 2.6E-05 5.7E-10 91.5 12.5 119 502-637 203-406 (896)
157 PRK09405 aceE pyruvate dehydro 98.1 3.2E-05 7E-10 90.5 13.0 120 502-638 195-399 (891)
158 PRK05261 putative phosphoketol 98.0 2.9E-05 6.3E-10 89.7 11.4 118 502-636 142-286 (785)
159 COG0674 PorA Pyruvate:ferredox 97.9 0.00016 3.5E-09 77.8 13.7 157 87-248 5-166 (365)
160 COG1880 CdhB CO dehydrogenase/ 97.8 0.00012 2.5E-09 66.9 8.8 74 282-365 27-119 (170)
161 KOG1182 Branched chain alpha-k 97.8 2.8E-05 6E-10 78.4 4.9 115 503-636 194-321 (432)
162 TIGR02176 pyruv_ox_red pyruvat 97.5 0.0018 4E-08 79.5 15.7 114 521-636 952-1070(1165)
163 cd07033 TPP_PYR_DXS_TK_like Py 96.7 0.035 7.6E-07 52.4 13.1 148 91-247 4-156 (156)
164 PF02776 TPP_enzyme_N: Thiamin 96.5 0.057 1.2E-06 51.8 13.7 126 485-634 32-163 (172)
165 cd07039 TPP_PYR_POX Pyrimidine 96.5 0.12 2.6E-06 49.3 15.2 118 492-634 38-160 (164)
166 cd07035 TPP_PYR_POX_like Pyrim 96.3 0.018 3.8E-07 54.2 8.5 104 507-631 46-154 (155)
167 COG1029 FwdB Formylmethanofura 96.2 0.12 2.5E-06 54.1 14.3 139 275-420 64-219 (429)
168 PF02552 CO_dh: CO dehydrogena 96.1 0.017 3.7E-07 54.8 6.9 101 278-388 22-140 (167)
169 PTZ00182 3-methyl-2-oxobutanat 95.6 0.89 1.9E-05 49.0 18.8 156 87-251 34-209 (355)
170 smart00861 Transket_pyr Transk 95.6 0.11 2.3E-06 49.7 10.5 111 129-247 52-166 (168)
171 PF02779 Transket_pyr: Transke 95.5 0.099 2.1E-06 50.5 10.2 118 128-249 49-174 (178)
172 cd07036 TPP_PYR_E1-PDHc-beta_l 95.5 0.34 7.3E-06 46.3 13.3 149 90-247 3-167 (167)
173 PF02775 TPP_enzyme_C: Thiamin 95.3 0.099 2.1E-06 49.1 8.9 104 136-245 31-153 (153)
174 cd07038 TPP_PYR_PDC_IPDC_like 94.9 0.47 1E-05 45.1 12.4 121 493-631 36-161 (162)
175 PF09364 XFP_N: XFP N-terminal 94.9 0.045 9.7E-07 57.6 5.7 95 502-613 140-241 (379)
176 cd06586 TPP_enzyme_PYR Pyrimid 94.8 0.28 6.1E-06 45.7 10.6 102 507-631 47-153 (154)
177 cd02004 TPP_BZL_OCoD_HPCL Thia 94.8 0.14 3.1E-06 49.0 8.6 106 137-248 52-172 (172)
178 cd07037 TPP_PYR_MenD Pyrimidin 94.7 0.54 1.2E-05 44.7 12.3 115 492-631 35-161 (162)
179 cd02009 TPP_SHCHC_synthase Thi 94.6 0.75 1.6E-05 44.3 13.2 106 137-248 55-175 (175)
180 PRK11892 pyruvate dehydrogenas 94.5 0.55 1.2E-05 52.3 13.7 147 87-244 141-309 (464)
181 cd02013 TPP_Xsc_like Thiamine 94.4 0.81 1.8E-05 44.9 13.2 108 138-248 58-179 (196)
182 cd02006 TPP_Gcl Thiamine pyrop 94.3 0.52 1.1E-05 46.5 11.6 109 138-248 62-194 (202)
183 TIGR03845 sulfopyru_alph sulfo 94.1 0.61 1.3E-05 44.1 11.1 104 505-630 44-152 (157)
184 cd02014 TPP_POX Thiamine pyrop 94.1 1.5 3.2E-05 42.3 14.1 116 127-248 42-173 (178)
185 PRK12753 transketolase; Review 94.1 0.35 7.7E-06 56.5 11.4 116 128-248 403-521 (663)
186 PRK12270 kgd alpha-ketoglutara 94.1 0.34 7.4E-06 57.1 10.9 93 523-634 650-754 (1228)
187 cd02010 TPP_ALS Thiamine pyrop 94.0 0.42 9.2E-06 46.1 10.1 105 138-248 53-170 (177)
188 cd02001 TPP_ComE_PpyrDC Thiami 93.8 2.1 4.6E-05 40.3 14.2 136 104-248 15-155 (157)
189 cd02761 MopB_FmdB-FwdB The Mop 93.7 0.4 8.7E-06 52.7 10.5 117 274-394 54-183 (415)
190 cd02003 TPP_IolD Thiamine pyro 93.6 0.36 7.9E-06 47.7 9.0 138 105-248 17-184 (205)
191 PRK12754 transketolase; Review 93.6 0.8 1.7E-05 53.4 13.0 116 128-248 403-521 (663)
192 PTZ00089 transketolase; Provis 93.5 0.45 9.8E-06 55.6 10.9 116 128-248 404-522 (661)
193 PLN02790 transketolase 93.4 0.98 2.1E-05 52.8 13.6 115 128-248 393-512 (654)
194 TIGR00232 tktlase_bact transke 93.3 0.71 1.5E-05 53.9 12.1 115 128-248 397-515 (653)
195 PRK09444 pntB pyridine nucleot 93.3 0.34 7.4E-06 52.7 8.7 129 278-416 294-461 (462)
196 TIGR00204 dxs 1-deoxy-D-xylulo 93.2 1.3 2.8E-05 51.5 14.0 151 88-248 310-470 (617)
197 cd02015 TPP_AHAS Thiamine pyro 93.0 0.7 1.5E-05 44.9 9.9 105 138-248 55-174 (186)
198 PRK12571 1-deoxy-D-xylulose-5- 92.9 0.94 2E-05 52.8 12.2 148 89-248 320-479 (641)
199 PRK07979 acetolactate synthase 92.8 1.8 3.8E-05 50.0 14.4 119 492-635 42-166 (574)
200 PRK05444 1-deoxy-D-xylulose-5- 92.6 1.2 2.6E-05 51.4 12.6 152 88-249 279-440 (580)
201 COG3957 Phosphoketolase [Carbo 92.5 0.21 4.5E-06 56.7 5.8 91 502-611 153-252 (793)
202 PLN02582 1-deoxy-D-xylulose-5- 92.4 1.8 3.9E-05 50.5 13.6 152 88-249 356-517 (677)
203 PRK05778 2-oxoglutarate ferred 92.4 1.5 3.2E-05 46.1 11.8 149 89-248 28-203 (301)
204 cd01408 SIRT1 SIRT1: Eukaryoti 92.4 0.2 4.3E-06 50.7 5.2 66 348-413 169-235 (235)
205 PRK11866 2-oxoacid ferredoxin 92.4 1.4 3E-05 45.8 11.4 92 91-187 19-114 (279)
206 cd03375 TPP_OGFOR Thiamine pyr 92.3 1.1 2.5E-05 43.8 10.4 148 90-248 10-184 (193)
207 cd00568 TPP_enzymes Thiamine p 92.2 0.68 1.5E-05 43.8 8.5 104 137-246 50-167 (168)
208 PRK14138 NAD-dependent deacety 92.2 0.29 6.4E-06 49.8 6.2 68 348-417 172-241 (244)
209 PRK09212 pyruvate dehydrogenas 92.1 2.1 4.6E-05 45.6 12.9 113 128-249 52-176 (327)
210 PRK00481 NAD-dependent deacety 92.1 0.33 7.2E-06 49.4 6.5 68 348-417 171-240 (242)
211 cd02005 TPP_PDC_IPDC Thiamine 92.1 4.9 0.00011 38.9 14.4 106 138-248 55-174 (183)
212 PRK07524 hypothetical protein; 92.1 0.8 1.7E-05 52.3 10.3 120 493-634 40-165 (535)
213 TIGR03297 Ppyr-DeCO2ase phosph 92.0 0.47 1E-05 51.1 7.8 109 505-632 36-152 (361)
214 CHL00144 odpB pyruvate dehydro 91.9 2.7 5.8E-05 44.8 13.3 153 88-249 4-176 (327)
215 PRK07789 acetolactate synthase 91.8 2.6 5.5E-05 49.1 14.2 117 493-634 70-192 (612)
216 cd07033 TPP_PYR_DXS_TK_like Py 91.7 1.6 3.4E-05 41.2 10.2 115 491-630 37-154 (156)
217 PRK07586 hypothetical protein; 91.6 2.7 5.9E-05 47.7 13.9 119 492-635 39-163 (514)
218 cd02008 TPP_IOR_alpha Thiamine 91.6 1.7 3.7E-05 41.9 10.6 104 138-245 56-174 (178)
219 PRK09628 oorB 2-oxoglutarate-a 91.6 2.6 5.6E-05 43.8 12.4 146 91-248 28-201 (277)
220 PRK08322 acetolactate synthase 91.5 0.86 1.9E-05 52.2 9.8 106 507-634 50-161 (547)
221 PRK07710 acetolactate synthase 91.5 0.93 2E-05 52.3 10.1 118 492-634 53-176 (571)
222 PRK06725 acetolactate synthase 91.5 0.79 1.7E-05 52.8 9.4 119 492-635 52-176 (570)
223 TIGR03846 sulfopy_beta sulfopy 91.5 3.9 8.4E-05 39.6 12.9 104 138-248 47-156 (181)
224 PRK08611 pyruvate oxidase; Pro 91.4 1.1 2.4E-05 51.7 10.5 117 493-634 44-165 (576)
225 PLN02234 1-deoxy-D-xylulose-5- 91.3 3.2 6.9E-05 48.1 13.9 150 88-249 357-518 (641)
226 PLN02683 pyruvate dehydrogenas 91.3 4 8.8E-05 44.0 13.9 158 81-247 19-197 (356)
227 PRK06466 acetolactate synthase 91.2 2.1 4.5E-05 49.4 12.5 118 492-634 42-165 (574)
228 TIGR00118 acolac_lg acetolacta 91.2 2.9 6.3E-05 48.0 13.7 117 493-634 40-162 (558)
229 PRK09107 acetolactate synthase 91.1 0.79 1.7E-05 53.1 9.0 118 493-635 50-173 (595)
230 PRK06276 acetolactate synthase 91.0 1 2.2E-05 52.1 9.8 106 507-634 50-161 (586)
231 cd02002 TPP_BFDC Thiamine pyro 90.8 7.2 0.00016 37.3 14.0 134 106-246 20-177 (178)
232 PRK07525 sulfoacetaldehyde ace 90.8 6.6 0.00014 45.5 16.1 108 138-248 440-562 (588)
233 PRK11269 glyoxylate carboligas 90.7 1.5 3.3E-05 50.7 10.9 118 493-634 43-166 (591)
234 PRK11869 2-oxoacid ferredoxin 90.6 5 0.00011 41.7 13.4 148 90-246 19-191 (280)
235 PRK08617 acetolactate synthase 90.5 1.3 2.8E-05 50.9 10.0 106 507-634 54-165 (552)
236 TIGR03181 PDH_E1_alph_x pyruva 90.5 1.6 3.5E-05 46.8 10.0 109 137-248 130-246 (341)
237 TIGR01504 glyox_carbo_lig glyo 90.5 1.4 3E-05 51.1 10.2 108 507-635 53-166 (588)
238 PRK07418 acetolactate synthase 90.5 1.4 3E-05 51.3 10.3 117 493-634 61-183 (616)
239 PRK08978 acetolactate synthase 90.4 1 2.2E-05 51.6 9.1 106 507-634 50-161 (548)
240 PRK08327 acetolactate synthase 90.4 1.1 2.4E-05 51.6 9.3 111 137-248 434-567 (569)
241 COG2025 FixB Electron transfer 90.2 1.1 2.4E-05 46.9 8.2 110 294-418 197-311 (313)
242 PRK06882 acetolactate synthase 90.2 1.5 3.1E-05 50.7 10.1 106 507-634 54-165 (574)
243 PRK05899 transketolase; Review 90.1 1.2 2.7E-05 51.8 9.5 116 128-248 368-486 (624)
244 cd07034 TPP_PYR_PFOR_IOR-alpha 90.1 1 2.3E-05 42.3 7.4 103 506-630 52-158 (160)
245 PRK12474 hypothetical protein; 90.1 5.7 0.00012 45.2 14.7 118 493-635 44-167 (518)
246 TIGR03254 oxalate_oxc oxalyl-C 90.1 1.5 3.2E-05 50.4 10.0 119 493-634 41-165 (554)
247 PTZ00408 NAD-dependent deacety 90.0 0.67 1.5E-05 47.1 6.3 69 347-417 165-235 (242)
248 PRK03363 fixB putative electro 90.0 1.4 2.9E-05 46.5 8.7 111 293-418 196-312 (313)
249 cd01412 SIRT5_Af1_CobB SIRT5_A 90.0 0.57 1.2E-05 47.1 5.7 64 348-413 158-223 (224)
250 TIGR03457 sulphoacet_xsc sulfo 90.0 5.8 0.00013 45.8 14.8 159 86-248 379-557 (579)
251 PLN02470 acetolactate synthase 89.9 1.2 2.7E-05 51.4 9.2 117 493-634 52-174 (585)
252 PLN00022 electron transfer fla 89.9 0.97 2.1E-05 48.4 7.6 112 293-419 238-354 (356)
253 PRK09259 putative oxalyl-CoA d 89.9 1.6 3.5E-05 50.3 10.1 119 493-634 48-172 (569)
254 PRK06112 acetolactate synthase 89.9 1.8 3.9E-05 50.0 10.5 117 493-634 50-172 (578)
255 PRK06457 pyruvate dehydrogenas 89.8 1.7 3.7E-05 49.8 10.2 117 493-634 40-161 (549)
256 cd03372 TPP_ComE Thiamine pyro 89.8 8.6 0.00019 37.1 13.6 103 137-248 46-155 (179)
257 PRK06456 acetolactate synthase 89.8 1.6 3.4E-05 50.4 10.0 117 493-634 44-166 (572)
258 PRK08979 acetolactate synthase 89.8 1.5 3.3E-05 50.5 9.8 117 493-634 43-165 (572)
259 PRK05858 hypothetical protein; 89.7 1.8 3.9E-05 49.6 10.3 117 493-634 43-165 (542)
260 PRK06048 acetolactate synthase 89.7 1.2 2.6E-05 51.3 8.8 106 507-634 57-168 (561)
261 cd07036 TPP_PYR_E1-PDHc-beta_l 89.7 4.3 9.3E-05 38.8 11.2 114 489-629 39-164 (167)
262 PRK08155 acetolactate synthase 89.7 5 0.00011 46.2 14.0 117 493-634 52-174 (564)
263 COG0028 IlvB Thiamine pyrophos 89.7 1.4 3.1E-05 50.3 9.3 107 506-634 50-162 (550)
264 PRK12315 1-deoxy-D-xylulose-5- 89.6 3.4 7.3E-05 47.7 12.4 151 88-249 278-438 (581)
265 PF02233 PNTB: NAD(P) transhyd 89.6 1.4 3E-05 48.6 8.6 128 279-416 296-462 (463)
266 PRK05333 NAD-dependent deacety 89.5 0.7 1.5E-05 48.2 6.2 69 348-418 208-278 (285)
267 PRK08199 thiamine pyrophosphat 89.5 2.1 4.6E-05 49.2 10.7 106 507-634 58-169 (557)
268 PRK07282 acetolactate synthase 89.4 3.9 8.5E-05 47.1 12.8 118 493-635 49-172 (566)
269 PLN02225 1-deoxy-D-xylulose-5- 89.3 4.9 0.00011 46.9 13.2 149 88-248 381-541 (701)
270 PRK11916 electron transfer fla 89.2 1.5 3.2E-05 46.2 8.3 110 294-418 196-311 (312)
271 PRK08266 hypothetical protein; 89.2 5.9 0.00013 45.3 14.0 121 492-634 43-169 (542)
272 TIGR03129 one_C_dehyd_B formyl 89.1 1.9 4.2E-05 47.3 9.7 117 274-394 60-189 (421)
273 PRK07064 hypothetical protein; 89.1 2.5 5.4E-05 48.4 10.8 109 507-634 53-167 (544)
274 PRK06965 acetolactate synthase 88.9 2.2 4.8E-05 49.3 10.3 117 493-634 60-182 (587)
275 PRK08527 acetolactate synthase 88.7 1.9 4.2E-05 49.5 9.6 106 507-634 53-164 (563)
276 TIGR02418 acolac_catab acetola 88.6 1.9 4.2E-05 49.2 9.5 106 507-634 48-159 (539)
277 cd02018 TPP_PFOR Thiamine pyro 88.4 3 6.5E-05 42.3 9.7 95 150-249 87-204 (237)
278 PRK06163 hypothetical protein; 88.4 4.4 9.5E-05 40.0 10.6 105 137-248 61-173 (202)
279 PTZ00409 Sir2 (Silent Informat 88.4 1.2 2.5E-05 46.2 6.7 71 347-419 192-264 (271)
280 cd02768 MopB_NADH-Q-OR-NuoG2 M 88.3 3.1 6.6E-05 45.2 10.5 114 275-392 70-191 (386)
281 PF00676 E1_dh: Dehydrogenase 88.2 1.8 3.9E-05 45.6 8.2 99 144-246 112-223 (300)
282 TIGR02720 pyruv_oxi_spxB pyruv 88.0 2.4 5.3E-05 48.8 9.9 117 493-634 39-160 (575)
283 cd03376 TPP_PFOR_porB_like Thi 88.0 3.9 8.5E-05 41.4 10.2 94 150-248 80-200 (235)
284 PRK08273 thiamine pyrophosphat 87.9 7.2 0.00016 45.2 13.7 156 87-248 365-546 (597)
285 TIGR00173 menD 2-succinyl-5-en 87.8 1.8 3.8E-05 48.1 8.2 117 493-634 39-167 (432)
286 PLN02374 pyruvate dehydrogenas 87.8 1.8 4E-05 47.7 8.2 94 152-247 223-324 (433)
287 PRK07092 benzoylformate decarb 87.7 2.6 5.6E-05 48.1 9.7 107 507-634 60-172 (530)
288 CHL00149 odpA pyruvate dehydro 87.5 3.3 7.1E-05 44.4 9.8 93 153-247 158-258 (341)
289 COG1282 PntB NAD/NADP transhyd 87.4 2.8 6.1E-05 44.2 8.7 77 279-364 297-393 (463)
290 cd02000 TPP_E1_PDC_ADC_BCADC T 87.4 2.3 4.9E-05 44.6 8.4 107 140-248 111-228 (293)
291 PRK13012 2-oxoacid dehydrogena 87.2 11 0.00023 45.5 14.5 119 129-248 576-704 (896)
292 CHL00099 ilvB acetohydroxyacid 87.1 2.6 5.6E-05 48.8 9.4 106 507-634 63-174 (585)
293 TIGR03182 PDH_E1_alph_y pyruva 86.7 2.4 5.3E-05 44.9 8.2 107 140-248 117-234 (315)
294 PRK09124 pyruvate dehydrogenas 86.4 15 0.00033 42.3 15.2 155 87-248 358-530 (574)
295 TIGR02177 PorB_KorB 2-oxoacid: 86.3 2.3 5E-05 44.3 7.5 143 91-247 13-185 (287)
296 PRK11867 2-oxoglutarate ferred 85.5 3.7 8E-05 42.8 8.7 151 89-248 27-202 (286)
297 COG3958 Transketolase, C-termi 85.4 5.2 0.00011 41.2 9.2 152 90-248 9-168 (312)
298 PRK11892 pyruvate dehydrogenas 85.3 8.2 0.00018 43.1 11.7 110 492-628 188-308 (464)
299 cd03371 TPP_PpyrDC Thiamine py 84.7 6.2 0.00013 38.4 9.4 105 138-248 53-163 (188)
300 COG2609 AceE Pyruvate dehydrog 84.7 4.1 8.9E-05 46.5 8.9 88 502-606 192-292 (887)
301 PF02779 Transket_pyr: Transke 84.6 4.6 0.0001 38.8 8.4 114 492-631 47-171 (178)
302 cd02752 MopB_Formate-Dh-Na-lik 84.5 1.6 3.4E-05 50.9 5.9 116 275-394 72-214 (649)
303 PRK06154 hypothetical protein; 84.5 19 0.00041 41.5 14.7 160 87-250 380-557 (565)
304 cd01409 SIRT4 SIRT4: Eukaryoti 84.4 1.1 2.5E-05 46.0 4.3 62 347-410 197-260 (260)
305 KOG3954 Electron transfer flav 83.6 4.8 0.0001 40.6 7.9 128 276-418 195-334 (336)
306 PRK07449 2-succinyl-5-enolpyru 83.5 9.2 0.0002 44.0 11.7 115 127-248 416-549 (568)
307 PRK06546 pyruvate dehydrogenas 83.1 20 0.00043 41.4 14.2 105 138-248 413-530 (578)
308 PLN02683 pyruvate dehydrogenas 82.9 13 0.00028 40.1 11.7 112 491-629 72-194 (356)
309 PLN02573 pyruvate decarboxylas 82.8 6.7 0.00015 45.3 10.1 107 138-248 433-552 (578)
310 COG1154 Dxs Deoxyxylulose-5-ph 82.6 37 0.0008 38.7 15.1 150 89-248 317-476 (627)
311 TIGR03394 indol_phenyl_DC indo 82.2 7.9 0.00017 44.2 10.4 105 138-248 408-521 (535)
312 KOG0451 Predicted 2-oxoglutara 81.8 8.1 0.00018 42.9 9.4 42 592-633 378-425 (913)
313 TIGR03336 IOR_alpha indolepyru 81.1 9.3 0.0002 44.3 10.5 109 137-248 407-530 (595)
314 KOG1905 Class IV sirtuins (SIR 80.3 3.4 7.3E-05 42.4 5.6 71 347-419 209-281 (353)
315 TIGR01591 Fdh-alpha formate de 80.0 6.7 0.00015 46.1 9.1 116 275-393 69-198 (671)
316 cd02750 MopB_Nitrate-R-NarG-li 79.8 11 0.00024 42.1 10.3 117 275-394 86-214 (461)
317 PRK09129 NADH dehydrogenase su 79.6 8.6 0.00019 46.1 9.9 112 275-392 288-412 (776)
318 TIGR01973 NuoG NADH-quinone ox 79.2 5.8 0.00013 46.0 8.1 115 275-394 287-407 (603)
319 TIGR03393 indolpyr_decarb indo 79.0 9.6 0.00021 43.6 9.7 104 139-248 410-527 (539)
320 cd02767 MopB_ydeP The MopB_yde 79.0 22 0.00048 41.0 12.5 113 275-390 82-203 (574)
321 cd02774 MopB_Res-Cmplx1_Nad11- 78.1 9.4 0.0002 41.4 8.7 111 275-389 70-188 (366)
322 PTZ00182 3-methyl-2-oxobutanat 78.0 27 0.00058 37.7 12.1 36 593-628 165-201 (355)
323 TIGR00300 conserved hypothetic 77.7 3.1 6.7E-05 44.4 4.6 104 308-418 296-405 (407)
324 TIGR03479 DMSO_red_II_alp DMSO 76.0 17 0.00038 44.4 11.2 141 275-418 140-294 (912)
325 cd02773 MopB_Res-Cmplx1_Nad11 75.6 13 0.00028 40.3 9.0 110 275-390 69-186 (375)
326 cd01410 SIRT7 SIRT7: Eukaryoti 75.2 3.9 8.6E-05 40.5 4.5 56 347-404 148-205 (206)
327 PRK09212 pyruvate dehydrogenas 75.2 31 0.00067 36.8 11.5 37 592-628 133-170 (327)
328 KOG2682 NAD-dependent histone 75.2 7.6 0.00017 38.6 6.2 77 352-440 210-289 (314)
329 PRK10886 DnaA initiator-associ 74.5 16 0.00035 35.9 8.5 102 88-190 28-149 (196)
330 cd02007 TPP_DXS Thiamine pyrop 74.5 33 0.00071 33.6 10.7 101 139-246 81-188 (195)
331 COG1071 AcoA Pyruvate/2-oxoglu 73.4 15 0.00032 39.4 8.4 115 129-245 136-258 (358)
332 CHL00144 odpB pyruvate dehydro 73.0 36 0.00079 36.2 11.4 38 592-629 133-171 (327)
333 PRK11865 pyruvate ferredoxin o 72.6 29 0.00062 36.5 10.2 114 127-246 64-209 (299)
334 PRK05261 putative phosphoketol 72.6 42 0.00091 39.9 12.6 112 128-247 451-580 (785)
335 cd01460 vWA_midasin VWA_Midasi 72.1 19 0.00042 37.1 8.7 85 522-621 166-257 (266)
336 cd02766 MopB_3 The MopB_3 CD i 72.0 9.8 0.00021 43.1 7.3 140 275-418 74-227 (501)
337 cd00368 Molybdopterin-Binding 71.9 3.6 7.8E-05 44.3 3.6 116 275-393 72-199 (374)
338 cd02753 MopB_Formate-Dh-H Form 70.4 12 0.00026 42.3 7.6 117 275-394 70-200 (512)
339 PLN02980 2-oxoglutarate decarb 70.3 13 0.00029 48.3 8.7 104 139-248 767-889 (1655)
340 cd01411 SIR2H SIR2H: Uncharact 70.1 3.6 7.7E-05 41.4 2.8 47 348-394 165-212 (225)
341 TIGR01701 Fdhalpha-like oxidor 69.9 22 0.00048 42.4 9.8 114 275-390 117-238 (743)
342 PLN02269 Pyruvate dehydrogenas 69.7 19 0.00041 38.9 8.4 112 130-246 139-257 (362)
343 TIGR03186 AKGDH_not_PDH alpha- 69.1 54 0.0012 39.6 12.6 119 130-248 564-691 (889)
344 PRK00414 gmhA phosphoheptose i 69.1 31 0.00066 33.7 9.1 100 88-188 31-149 (192)
345 cd02772 MopB_NDH-1_NuoG2 MopB_ 69.1 14 0.00029 40.7 7.5 112 275-390 70-192 (414)
346 cd01407 SIR2-fam SIR2 family o 69.0 5.3 0.00011 39.9 3.8 56 347-404 160-217 (218)
347 COG0075 Serine-pyruvate aminot 68.9 8.7 0.00019 41.7 5.6 41 590-633 117-171 (383)
348 PTZ00410 NAD-dependent SIR2; P 67.4 14 0.00031 39.5 6.8 43 348-390 199-242 (349)
349 PRK11864 2-ketoisovalerate fer 67.2 54 0.0012 34.4 10.9 113 127-246 64-205 (300)
350 PF13580 SIS_2: SIS domain; PD 66.7 19 0.00042 33.0 6.8 95 89-185 23-138 (138)
351 cd02755 MopB_Thiosulfate-R-lik 65.8 13 0.00028 41.5 6.5 115 275-394 75-201 (454)
352 cd01413 SIR2_Af2 SIR2_Af2: Arc 65.7 6.1 0.00013 39.6 3.5 47 347-393 164-212 (222)
353 PRK13936 phosphoheptose isomer 65.5 35 0.00077 33.4 8.8 100 89-188 31-149 (197)
354 PRK09130 NADH dehydrogenase su 64.3 21 0.00045 42.1 8.1 109 275-389 288-404 (687)
355 cd01453 vWA_transcription_fact 64.1 35 0.00077 32.9 8.4 70 520-620 107-179 (183)
356 cd02762 MopB_1 The MopB_1 CD i 63.6 45 0.00097 38.1 10.5 142 275-418 70-232 (539)
357 COG4032 Predicted thiamine-pyr 63.1 25 0.00055 32.2 6.4 100 508-628 55-159 (172)
358 COG0299 PurN Folate-dependent 62.1 59 0.0013 31.8 9.2 39 521-562 2-44 (200)
359 COG3958 Transketolase, C-termi 61.6 93 0.002 32.4 10.9 116 486-629 42-164 (312)
360 cd02757 MopB_Arsenate-R This C 61.4 23 0.00049 40.4 7.5 114 275-394 80-208 (523)
361 cd02754 MopB_Nitrate-R-NapA-li 60.9 16 0.00035 42.0 6.2 119 275-394 71-203 (565)
362 COG1915 Uncharacterized conser 60.4 3.7 8.1E-05 42.2 0.8 102 312-419 299-405 (415)
363 COG1029 FwdB Formylmethanofura 60.2 21 0.00045 37.9 6.2 113 277-390 232-370 (429)
364 TIGR00441 gmhA phosphoheptose 59.0 86 0.0019 29.2 9.8 97 92-188 2-117 (154)
365 smart00861 Transket_pyr Transk 58.7 45 0.00097 31.5 8.0 101 507-629 61-163 (168)
366 cd02016 TPP_E1_OGDC_like Thiam 57.6 25 0.00053 36.2 6.2 94 151-246 139-244 (265)
367 cd02764 MopB_PHLH The MopB_PHL 57.4 92 0.002 35.4 11.6 135 275-417 116-272 (524)
368 PF06506 PrpR_N: Propionate ca 56.3 53 0.0011 31.4 8.1 92 517-621 73-165 (176)
369 PRK08659 2-oxoglutarate ferred 55.8 48 0.0011 36.0 8.5 50 507-558 60-109 (376)
370 cd02012 TPP_TK Thiamine pyroph 55.6 53 0.0012 33.5 8.4 105 138-248 110-227 (255)
371 PRK09939 putative oxidoreducta 55.3 14 0.0003 44.1 4.5 109 275-389 126-247 (759)
372 TIGR01553 formate-DH-alph form 55.1 25 0.00054 43.4 6.7 117 275-394 124-265 (1009)
373 COG0846 SIR2 NAD-dependent pro 52.4 11 0.00024 38.5 2.6 69 347-417 175-245 (250)
374 PRK13938 phosphoheptose isomer 52.0 71 0.0015 31.3 8.2 100 89-189 33-152 (196)
375 PRK13937 phosphoheptose isomer 51.4 86 0.0019 30.3 8.7 101 89-189 26-145 (188)
376 cd00296 SIR2 SIR2 superfamily 50.8 17 0.00038 36.0 3.9 45 349-393 164-210 (222)
377 PRK07119 2-ketoisovalerate fer 49.3 22 0.00048 38.3 4.6 49 507-557 60-108 (352)
378 PRK05647 purN phosphoribosylgl 49.1 43 0.00093 32.9 6.2 37 521-557 3-39 (200)
379 PRK13685 hypothetical protein; 49.1 1.1E+02 0.0023 32.6 9.7 86 521-621 194-288 (326)
380 PRK13761 hypothetical protein; 48.8 35 0.00076 33.9 5.3 136 275-417 52-208 (248)
381 cd02770 MopB_DmsA-EC This CD ( 47.8 53 0.0012 38.2 7.8 141 275-418 79-240 (617)
382 cd02765 MopB_4 The MopB_4 CD i 47.6 99 0.0021 35.6 9.9 68 351-418 156-229 (567)
383 COG2247 LytB Putative cell wal 47.4 39 0.00085 35.4 5.7 56 293-365 30-86 (337)
384 cd02751 MopB_DMSOR-like The Mo 47.2 46 0.00099 38.7 7.1 119 275-394 77-221 (609)
385 cd05007 SIS_Etherase N-acetylm 47.0 86 0.0019 32.1 8.3 102 89-190 37-158 (257)
386 COG0567 SucA 2-oxoglutarate de 46.9 1.4E+02 0.0031 35.9 10.7 112 502-634 298-432 (906)
387 cd02759 MopB_Acetylene-hydrata 45.9 47 0.001 37.3 6.8 117 275-395 74-206 (477)
388 KOG4166 Thiamine pyrophosphate 45.6 50 0.0011 35.9 6.3 103 510-635 144-253 (675)
389 TIGR03710 OAFO_sf 2-oxoacid:ac 45.4 61 0.0013 37.3 7.6 51 507-559 249-299 (562)
390 PRK08493 NADH dehydrogenase su 45.3 50 0.0011 39.7 7.0 109 276-392 296-413 (819)
391 PRK13532 nitrate reductase cat 45.2 99 0.0022 37.5 9.8 68 351-418 203-278 (830)
392 COG1701 Uncharacterized protei 45.2 39 0.00084 33.2 4.9 138 274-418 53-212 (256)
393 TIGR00655 PurU formyltetrahydr 44.3 49 0.0011 34.4 6.1 36 519-557 84-122 (280)
394 PF13519 VWA_2: von Willebrand 42.7 39 0.00085 31.2 4.7 71 520-618 99-171 (172)
395 TIGR00274 N-acetylmuramic acid 42.7 79 0.0017 33.1 7.3 99 89-188 45-164 (291)
396 PRK15482 transcriptional regul 42.2 69 0.0015 33.2 6.9 45 276-321 121-166 (285)
397 cd05006 SIS_GmhA Phosphoheptos 41.1 1.9E+02 0.004 27.5 9.2 100 89-188 21-139 (177)
398 PF01855 POR_N: Pyruvate flavo 40.8 25 0.00054 35.4 3.2 50 507-558 48-97 (230)
399 cd06311 PBP1_ABC_sugar_binding 40.7 3.9E+02 0.0084 26.7 13.8 149 87-248 109-272 (274)
400 cd05569 PTS_IIB_fructose PTS_I 40.5 1.1E+02 0.0024 26.1 6.7 73 295-388 5-81 (96)
401 cd02763 MopB_2 The MopB_2 CD i 40.5 57 0.0012 38.4 6.5 141 275-418 74-225 (679)
402 PRK13010 purU formyltetrahydro 39.9 66 0.0014 33.6 6.2 36 519-557 93-131 (289)
403 cd02761 MopB_FmdB-FwdB The Mop 39.5 2.1E+02 0.0046 31.1 10.6 41 276-316 221-267 (415)
404 cd08769 DAP_dppA_2 Peptidase M 39.1 8 0.00017 39.9 -0.7 143 90-235 38-205 (270)
405 PRK13398 3-deoxy-7-phosphohept 38.9 1.4E+02 0.003 30.8 8.4 49 276-324 39-99 (266)
406 PF00384 Molybdopterin: Molybd 38.8 26 0.00057 38.4 3.3 143 275-418 21-182 (432)
407 PF00766 ETF_alpha: Electron t 38.7 32 0.00069 28.9 2.9 61 293-364 9-73 (86)
408 COG1737 RpiR Transcriptional r 37.7 88 0.0019 32.4 6.8 96 275-388 115-213 (281)
409 PRK08366 vorA 2-ketoisovalerat 37.5 49 0.0011 36.2 5.0 47 507-555 61-107 (390)
410 COG4231 Indolepyruvate ferredo 37.0 98 0.0021 35.6 7.3 104 140-245 435-551 (640)
411 cd00281 DAP_dppA Peptidase M55 36.9 17 0.00038 37.3 1.3 142 90-234 38-203 (265)
412 PRK07860 NADH dehydrogenase su 36.8 63 0.0014 38.9 6.3 113 275-390 295-417 (797)
413 TIGR00162 conserved hypothetic 36.4 2.4E+02 0.0053 27.4 9.2 87 89-190 34-123 (188)
414 TIGR00639 PurN phosphoribosylg 36.3 1.1E+02 0.0023 29.9 6.7 37 521-557 2-38 (190)
415 cd05005 SIS_PHI Hexulose-6-pho 36.3 1.3E+02 0.0028 28.6 7.3 45 276-321 19-64 (179)
416 cd02760 MopB_Phenylacetyl-CoA- 35.8 1.2E+02 0.0026 36.3 8.3 68 351-418 170-244 (760)
417 PF02603 Hpr_kinase_N: HPr Ser 35.7 40 0.00086 30.5 3.4 48 276-324 66-113 (127)
418 PRK08811 uroporphyrinogen-III 35.7 2.1E+02 0.0046 29.4 9.2 36 150-185 189-227 (266)
419 PF00455 DeoRC: DeoR C termina 34.5 3.3E+02 0.0071 25.6 9.6 85 458-552 9-98 (161)
420 PRK15488 thiosulfate reductase 34.2 91 0.002 37.3 7.1 138 275-418 118-268 (759)
421 PRK13982 bifunctional SbtC-lik 33.9 1.4E+02 0.003 33.6 7.8 90 454-555 234-341 (475)
422 KOG0450 2-oxoglutarate dehydro 33.9 93 0.002 36.0 6.4 92 523-633 404-507 (1017)
423 cd02072 Glm_B12_BD B12 binding 33.1 49 0.0011 30.1 3.4 28 94-122 100-127 (128)
424 PRK10427 putative PTS system f 32.7 1.8E+02 0.0039 25.8 6.9 81 304-417 21-103 (114)
425 COG0021 TktA Transketolase [Ca 32.6 3E+02 0.0065 31.9 10.1 115 128-247 404-520 (663)
426 PRK05333 NAD-dependent deacety 32.5 56 0.0012 34.0 4.3 37 276-322 5-41 (285)
427 cd00368 Molybdopterin-Binding 32.4 2.5E+02 0.0055 29.9 9.6 85 276-367 229-319 (374)
428 PRK12570 N-acetylmuramic acid- 32.4 1.8E+02 0.004 30.4 8.1 102 89-190 46-167 (296)
429 PF06707 DUF1194: Protein of u 32.4 3.6E+02 0.0079 26.6 9.6 97 502-620 95-198 (205)
430 COG2894 MinD Septum formation 32.3 59 0.0013 32.5 4.1 116 500-621 10-134 (272)
431 PRK09622 porA pyruvate flavodo 31.5 2.2E+02 0.0048 31.3 8.9 49 507-557 68-116 (407)
432 PRK05579 bifunctional phosphop 31.4 1.5E+02 0.0033 32.5 7.6 95 454-560 169-278 (399)
433 cd08663 DAP_dppA_1 Peptidase M 31.0 13 0.00029 38.1 -0.6 141 91-234 39-204 (266)
434 COG3925 N-terminal domain of t 30.8 59 0.0013 27.6 3.2 32 352-389 38-69 (103)
435 cd06578 HemD Uroporphyrinogen- 30.7 4E+02 0.0087 25.9 10.2 62 89-150 83-146 (239)
436 cd05013 SIS_RpiR RpiR-like pro 30.7 89 0.0019 27.6 4.9 42 279-321 2-44 (139)
437 KOG2949 Ketopantoate hydroxyme 30.6 5E+02 0.011 26.1 10.0 133 165-321 25-159 (306)
438 PRK06027 purU formyltetrahydro 30.5 1.2E+02 0.0026 31.7 6.3 35 520-557 90-127 (286)
439 PF04951 Peptidase_M55: D-amin 30.1 11 0.00024 38.7 -1.4 144 90-235 38-205 (265)
440 COG1303 Uncharacterized protei 29.5 1.2E+02 0.0026 28.5 5.3 44 590-633 21-67 (179)
441 TIGR01580 narG respiratory nit 29.4 1.6E+02 0.0034 37.0 7.8 142 275-419 161-316 (1235)
442 TIGR02329 propionate_PrpR prop 29.3 1E+02 0.0022 35.2 6.0 104 503-621 81-184 (526)
443 KOG0524 Pyruvate dehydrogenase 29.1 1.6E+02 0.0034 30.3 6.4 112 490-628 79-201 (359)
444 TIGR03127 RuMP_HxlB 6-phospho 28.9 2.3E+02 0.005 26.8 7.7 87 91-189 20-111 (179)
445 cd06348 PBP1_ABC_ligand_bindin 28.7 1.4E+02 0.003 31.5 6.7 45 279-324 55-99 (344)
446 cd08770 DAP_dppA_3 Peptidase M 28.6 29 0.00062 35.7 1.3 142 91-236 39-205 (263)
447 TIGR00853 pts-lac PTS system, 28.6 1.1E+02 0.0023 26.2 4.7 53 289-360 2-56 (95)
448 PF05014 Nuc_deoxyrib_tr: Nucl 28.6 2.2E+02 0.0047 24.8 6.9 69 87-158 12-97 (113)
449 PF10750 DUF2536: Protein of u 28.3 1.1E+02 0.0023 24.4 4.0 32 602-633 13-44 (68)
450 TIGR01706 NAPA periplasmic nit 28.2 2.1E+02 0.0046 34.7 8.8 68 351-418 203-278 (830)
451 TIGR02482 PFKA_ATP 6-phosphofr 27.7 1.1E+02 0.0024 32.2 5.5 44 80-123 69-112 (301)
452 cd08182 HEPD Hydroxyethylphosp 27.6 1.8E+02 0.0038 31.4 7.3 42 278-320 9-52 (367)
453 PRK10681 DNA-binding transcrip 27.4 5.1E+02 0.011 26.2 10.3 85 459-553 83-172 (252)
454 COG0132 BioD Dethiobiotin synt 27.2 1.2E+02 0.0026 30.4 5.4 84 452-558 90-176 (223)
455 cd00763 Bacterial_PFK Phosphof 27.0 1.2E+02 0.0026 32.1 5.7 45 80-124 70-114 (317)
456 PRK10474 putative PTS system f 27.0 3.7E+02 0.008 22.5 7.6 64 305-389 3-68 (88)
457 KOG0225 Pyruvate dehydrogenase 26.9 2.7E+02 0.0059 29.6 7.9 94 148-246 183-285 (394)
458 cd02758 MopB_Tetrathionate-Ra 26.6 1.5E+02 0.0032 35.4 7.0 69 351-419 208-289 (735)
459 cd08170 GlyDH Glycerol dehydro 26.6 1.4E+02 0.0031 31.9 6.3 41 279-319 10-52 (351)
460 KOG0081 GTPase Rab27, small G 26.5 1E+02 0.0022 29.1 4.3 38 290-327 122-166 (219)
461 COG3960 Glyoxylate carboligase 26.5 1.6E+02 0.0035 31.0 6.2 45 590-634 117-166 (592)
462 PLN02537 diaminopimelate decar 26.4 2.8E+02 0.0061 30.3 8.8 77 528-634 66-142 (410)
463 COG0054 RibH Riboflavin syntha 26.3 98 0.0021 29.0 4.2 55 95-149 35-104 (152)
464 PRK13683 hypothetical protein; 26.2 95 0.0021 25.9 3.6 31 607-637 23-53 (87)
465 cd08193 HVD 5-hydroxyvalerate 25.7 2E+02 0.0044 31.1 7.4 43 278-320 12-58 (376)
466 TIGR00114 lumazine-synth 6,7-d 25.5 99 0.0021 28.5 4.1 44 80-123 8-56 (138)
467 PF04273 DUF442: Putative phos 25.3 1.3E+02 0.0028 26.5 4.7 76 533-633 14-96 (110)
468 cd08185 Fe-ADH1 Iron-containin 25.3 2.4E+02 0.0052 30.6 7.9 43 278-320 12-58 (380)
469 PRK09860 putative alcohol dehy 25.3 2.1E+02 0.0045 31.2 7.4 43 277-319 16-62 (383)
470 PRK05441 murQ N-acetylmuramic 25.2 3.5E+02 0.0076 28.3 8.8 100 89-189 50-170 (299)
471 PF04015 DUF362: Domain of unk 25.0 1.3E+02 0.0029 29.3 5.3 84 274-362 19-111 (206)
472 KOG1185 Thiamine pyrophosphate 24.9 1.7E+02 0.0036 32.7 6.2 117 492-633 51-173 (571)
473 cd06283 PBP1_RegR_EndR_KdgR_li 24.8 6.7E+02 0.014 24.6 12.8 87 87-173 100-200 (267)
474 PRK02947 hypothetical protein; 24.7 1.7E+02 0.0037 29.7 6.1 97 89-188 28-144 (246)
475 PRK08367 porA pyruvate ferredo 24.3 1E+02 0.0022 33.8 4.6 47 507-555 62-108 (394)
476 TIGR00829 FRU PTS system, fruc 24.2 3.3E+02 0.0072 22.7 6.8 47 304-365 16-63 (85)
477 PRK03202 6-phosphofructokinase 24.1 1.3E+02 0.0028 32.0 5.3 45 80-124 71-115 (320)
478 PRK10586 putative oxidoreducta 24.1 2.2E+02 0.0048 30.7 7.2 43 277-319 19-64 (362)
479 PRK11557 putative DNA-binding 24.1 1.9E+02 0.0041 29.6 6.6 69 276-361 114-182 (278)
480 COG1736 DPH2 Diphthamide synth 24.0 9.2E+02 0.02 25.9 18.1 99 503-628 166-272 (347)
481 cd08194 Fe-ADH6 Iron-containin 23.8 2.3E+02 0.0051 30.6 7.4 43 278-320 9-55 (375)
482 cd05005 SIS_PHI Hexulose-6-pho 23.6 3.7E+02 0.008 25.5 8.0 88 91-189 23-114 (179)
483 PF07085 DRTGG: DRTGG domain; 23.5 85 0.0018 27.1 3.2 31 291-323 62-92 (105)
484 COG3510 CmcI Cephalosporin hyd 23.2 7.1E+02 0.015 24.5 9.4 89 296-394 15-112 (237)
485 cd08176 LPO Lactadehyde:propan 23.2 2.2E+02 0.0048 30.8 7.1 43 277-319 13-59 (377)
486 TIGR03646 YtoQ_fam YtoQ family 23.1 3.3E+02 0.0072 24.9 6.7 25 296-320 5-29 (144)
487 TIGR03129 one_C_dehyd_B formyl 22.7 6.4E+02 0.014 27.3 10.8 41 276-316 227-273 (421)
488 PLN02404 6,7-dimethyl-8-ribity 22.7 1.3E+02 0.0028 27.9 4.3 45 79-123 14-63 (141)
489 cd06380 PBP1_iGluR_AMPA N-term 22.6 1.5E+02 0.0033 31.7 5.7 56 278-335 50-105 (382)
490 TIGR00161 conserved hypothetic 22.5 4.4E+02 0.0095 26.6 8.6 85 88-188 93-177 (238)
491 PRK11302 DNA-binding transcrip 22.5 1.4E+02 0.0031 30.6 5.3 45 276-321 114-159 (284)
492 PF10686 DUF2493: Protein of u 22.4 3.1E+02 0.0067 22.1 6.0 46 276-321 16-62 (71)
493 PLN02846 digalactosyldiacylgly 22.4 6.8E+02 0.015 28.1 10.7 102 294-419 262-363 (462)
494 cd08187 BDH Butanol dehydrogen 22.4 2.5E+02 0.0053 30.5 7.3 43 278-320 15-61 (382)
495 cd06351 PBP1_iGluR_N_LIVBP_lik 22.4 1.6E+02 0.0035 30.3 5.7 47 278-325 50-96 (328)
496 PRK09627 oorA 2-oxoglutarate-a 22.3 1.3E+02 0.0027 32.8 4.9 49 507-557 59-107 (375)
497 COG0252 AnsB L-asparaginase/ar 22.2 7.5E+02 0.016 26.7 10.6 46 276-323 242-290 (351)
498 PF12804 NTP_transf_3: MobA-li 22.2 6E+02 0.013 23.1 10.2 95 88-185 24-123 (160)
499 cd06347 PBP1_ABC_ligand_bindin 22.1 2.3E+02 0.005 29.3 6.9 45 279-324 55-99 (334)
500 cd08183 Fe-ADH2 Iron-containin 22.1 2.1E+02 0.0046 30.9 6.6 41 279-320 10-51 (374)
No 1
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=4.6e-123 Score=939.00 Aligned_cols=587 Identities=63% Similarity=1.023 Sum_probs=547.8
Q ss_pred ccccCCccCCCCccccccCCCCC---CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHH
Q 048725 64 TTIAQTVITSPETNFSSRFAPDQ---PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIF 140 (661)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~---~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~ 140 (661)
+++++|+.....+.|++||+|++ .++|+|++++.+.++||++||||||+.++|++|+|.+++.+++|+.|||++|+|
T Consensus 64 ~~~~sp~~psk~~t~~s~~~~D~sfvg~tGg~If~emm~rqnV~tVFgYPGGAilpv~dAi~rS~~f~fvLPrHEQgagh 143 (675)
T KOG4166|consen 64 TTTPSPTKPSKPETFISRFAPDQSFVGRTGGDIFVEMMERQNVETVFGYPGGAILPVHDAITRSSSFRFVLPRHEQGAGH 143 (675)
T ss_pred ccCCCCCCCCCcccccccCCCcccccCCchhHHHHHHHHhcCCceEeecCCcceeehHhhhhcCccccccccccccccch
Confidence 34444533332389999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcC
Q 048725 141 AAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVD 220 (661)
Q Consensus 141 ~A~Gyar~tg~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~ 220 (661)
||.||+|.+||||||++|||||++|.++++++|..|++||+++|||+|++.+|+++|||.|.+++.|++|||++.|.+.+
T Consensus 144 aAegYaR~sgKPGvvlvTSGPGATNvvtp~ADAlaDg~PlVvftGQVptsaIGtDAFQEadiVgisRScTKwNvmVkdVe 223 (675)
T KOG4166|consen 144 AAEGYARSSGKPGVVLVTSGPGATNVVTPLADALADGVPLVVFTGQVPTSAIGTDAFQEADIVGISRSCTKWNVMVKDVE 223 (675)
T ss_pred hhhhhhhhcCCCcEEEEecCCCcccccchhhHHhhcCCcEEEEecccchhhcccchhccCCeeeeeeccceeheeeecHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhhcCCCceEEEEeccchhhhccCCCCCCCCCCCC--CCCCCCCCCCH---HHHHHHHHHHHhCCCcEE
Q 048725 221 DIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPG--YMSRLPKEPSE---VHLEQIVRLISESKKPVL 295 (661)
Q Consensus 221 ~i~~~i~~A~~~a~s~~~GPV~I~iP~dv~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~l~~~~~~L~~AkrPvI 295 (661)
++|+.|++||.+|++||||||.+++|.|++.+...+.|+....+|. ++.+.++++++ ..+++++++|+.||||||
T Consensus 224 dlPrrI~EAFeiATSGRPGPVLVDlPKDvta~~l~~pip~~~~lPsn~~m~~~~~~~~~~v~~~i~~~a~Li~laKKPVl 303 (675)
T KOG4166|consen 224 DLPRRIEEAFEIATSGRPGPVLVDLPKDVTAQLLIPPIPQAMRLPSNAYMSRMPKPPEDFVMSHIEQIARLISLAKKPVL 303 (675)
T ss_pred HhhHHHHHHhhhhccCCCCCeEeeCcHHHHHHHhcCCchhhhcCCchhhHhhCCCCchhhHHHHHHHHHHHHHhccCceE
Confidence 9999999999999999999999999999998876666665555554 55566666665 679999999999999999
Q ss_pred EEcCCccch---HHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCc
Q 048725 296 YVGGGCLNS---SEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGK 372 (661)
Q Consensus 296 v~G~g~~~a---~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~ 372 (661)
++|+|+.+. ..+|.+|.|+++|||.+|++|.|.+++++++++.|+|++|+.++|++++++|+||++|.||++++|++
T Consensus 304 yvG~G~Ln~~d~p~lL~~fser~qIPVtttL~GLGs~d~~d~lSLhMLGMHG~~yAN~Avq~aDLilA~GvRFDDRVTGn 383 (675)
T KOG4166|consen 304 YVGGGCLNSSDGPRLLGRFSERTQIPVTTTLMGLGSYDCDDELSLHMLGMHGTVYANYAVQHADLILAFGVRFDDRVTGN 383 (675)
T ss_pred EeCcccccCCcchHHHHHHHHhhcCcceehhhcccCcCCCCchhhhhhcccccceehhhhhccceeEEecceeccccccc
Confidence 999999754 45999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCe---------EEEEcCCchhhccCCCCcceEeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCC
Q 048725 373 LEAFASRAK---------IVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYP 443 (661)
Q Consensus 373 ~~~~~~~~~---------vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~ 443 (661)
++.|.++++ +||+|+++.+||++.++++.++||++..|+.+...++.... ..+..|+.+++.++++++
T Consensus 384 ~s~FAp~Ar~aaae~rggIiHfdispknIgKvvqp~~aveGDv~~~L~~m~s~~kn~~~---~~r~dW~~qin~wK~~fP 460 (675)
T KOG4166|consen 384 LSAFAPRARRAAAEGRGGIIHFDISPKNIGKVVQPHVAVEGDVKLALQGMNSVLKNRAE---ELRLDWRNQINVWKQKFP 460 (675)
T ss_pred hhhhChhhhhhhhcccCceEEEecCHHHhCcccCcceeeeccHHHHHHHHHhHhhcccc---hhhhhHHHHHHHHHHhCC
Confidence 999988877 99999999999999999999999999999999998876654 234569999999999999
Q ss_pred CCcC--CCCCCCChHHHHHHHhhhcCC---CcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhC
Q 048725 444 LSFK--TFEESIPPQYAIQVLDELTNG---EAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVAN 518 (661)
Q Consensus 444 ~~~~--~~~~~i~~~~~~~~l~~~l~~---d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~ 518 (661)
..+. ..++.+.|++++++|+++..+ ..||.+++|+|+||++++|...+|++|++++|+|+||||+|+|||+++|+
T Consensus 461 ~sf~~~tpGe~ikPQ~vIk~Ldk~t~d~~~kviitTGVGqHQMWAAqfy~w~kP~~~~tSGGLGtMGfGLPAAIGAsVA~ 540 (675)
T KOG4166|consen 461 LSFKEETPGEAIKPQYVIKVLDKLTDDTGRKVIITTGVGQHQMWAAQFYNWKKPRQWLTSGGLGTMGFGLPAAIGASVAN 540 (675)
T ss_pred eeeeccCCccccChHHHHHHHHHhccCcCceEEEeccccHHHHHHHHHhcccCccceeecCCccccccCcchhhcccccC
Confidence 8876 567889999999999999866 67899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhH
Q 048725 519 PDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEA 598 (661)
Q Consensus 519 p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a 598 (661)
|+..||.|.||+||.|+.+||+|+++.++|++|+++||+..||+.|||+.+|..++.|+.--+ |||.++|++
T Consensus 541 P~~iViDIDGDaSF~Mt~~ELat~rq~~~PVKiLiLNNeeqGMVtQWq~lFYe~rysHThQ~n--------Pnf~klA~A 612 (675)
T KOG4166|consen 541 PDAIVIDIDGDASFIMTVQELATIRQENLPVKILILNNEEQGMVTQWQDLFYEARYSHTHQEN--------PNFLKLAAA 612 (675)
T ss_pred cccEEEeccCCceeeeehHhhhhhhhcCCceEEEEecchhhhhHHHHHHHHHHhhhccccccC--------ccHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999988777764333 899999999
Q ss_pred cCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCCCcCCcCCCCCccccccccCCCCCCC
Q 048725 599 CGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFKDVITEGDGRTQY 661 (661)
Q Consensus 599 ~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 661 (661)
||+++.||+..+||++.+++.+..+||+|+||.++++++++||+|.|..+.+++.+++||.+|
T Consensus 613 mGikalRV~K~edL~~k~keflsTkGPvLleV~v~~kehVlPmvpgG~~l~~fI~~~~~~~k~ 675 (675)
T KOG4166|consen 613 MGIKALRVTKKEDLREKIKEFLSTKGPVLLEVIVPHKEHVLPMVPGGGTLNDFITEGDGRIKY 675 (675)
T ss_pred cCCchheeehHHHHHHHHHHHhCCCCCeEEEEEccCccceeeecCCCccHhhhhccCCccccC
Confidence 999999999999999999999999999999999999999999999999999999999999987
No 2
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.5e-111 Score=942.23 Aligned_cols=542 Identities=51% Similarity=0.828 Sum_probs=483.9
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNL 166 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~ 166 (661)
.|+|+|+|++.|+++||++|||+||+.+++|+|+|.++ +|++|.||||++|+|||+||+|+|||||||++|+|||++|+
T Consensus 1 ~~~ga~~lv~~L~~~GV~~VFGiPG~~i~~~~dal~~~-~i~~I~~RHEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~ 79 (550)
T COG0028 1 MMTGAEALVEALEANGVDTVFGIPGGSILPLYDALYDS-GIRHILVRHEQGAAFAADGYARATGKPGVCLVTSGPGATNL 79 (550)
T ss_pred CCcHHHHHHHHHHHcCCcEEEeCCCccHHHHHHHHHhC-CCcEEEeccHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHH
Confidence 37899999999999999999999999999999999998 79999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEec
Q 048725 167 VSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVP 246 (661)
Q Consensus 167 l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP 246 (661)
++||++|+.|++|||+||||+++..+|+++|||+|+.+++++++||+++|.+++++++++++||+.|.++|||||||+||
T Consensus 80 ~tgla~A~~d~~Pll~itGqv~~~~~g~~afQe~D~~~l~~p~tk~~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP 159 (550)
T COG0028 80 LTGLADAYMDSVPLLAITGQVPTSLIGTDAFQEVDQVGLFRPITKYNFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLP 159 (550)
T ss_pred HHHHHHHHhcCCCEEEEeCCccccccCcchhhhcchhhHhhhhheeEEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCccc--hHHHHHHHHHHhCCCeeecCC
Q 048725 247 KDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLN--SSEELRKFVELTGIPVASTLM 324 (661)
Q Consensus 247 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~~--a~~~l~~lae~lg~PV~tt~~ 324 (661)
.|++.++...........+.+ .+.....+++++++++|.+||||||++|+|+.. +.+++++|+|++++||++|++
T Consensus 160 ~Dv~~~~~~~~~~~~~~~~~~---~p~~~~~~~i~~aa~~L~~AkrPvIl~G~G~~~a~a~~~l~~lae~~~~Pv~~t~~ 236 (550)
T COG0028 160 KDVLAAEAEEPGPEPAILPPY---RPAPPPPEAIRKAAELLAEAKRPVILAGGGVRRAGASEELRELAEKLGAPVVTTLM 236 (550)
T ss_pred hhHhhcccccccccccccccC---CCCCCcHHHHHHHHHHHHhCCCCEEEECCCccccccHHHHHHHHHHHCCCEEEccC
Confidence 999988753322111111111 111112288999999999999999999999974 569999999999999999999
Q ss_pred CCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcceEec
Q 048725 325 GLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCA 404 (661)
Q Consensus 325 gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~ 404 (661)
|||++|++||+++|++|++|+..++.++++||+||+||++|+++.++ +..|....++||||+|+.++++++++++.|++
T Consensus 237 gkg~~p~~hp~~lG~~g~~g~~~a~~~~~~aDlll~vG~rf~~~~~~-~~~f~~~~~ii~iDidp~ei~k~~~~~~~i~g 315 (550)
T COG0028 237 GKGAVPEDHPLSLGMLGMHGTKAANEALEEADLLLAVGARFDDRVTG-YSGFAPPAAIIHIDIDPAEIGKNYPVDVPIVG 315 (550)
T ss_pred cCccCCCCCccccccccccccHHHHHHhhcCCEEEEecCCCcccccc-hhhhCCcCCEEEEeCChHHhCCCCCCCeeEec
Confidence 99999999999999999999988999999999999999999999888 66666554499999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCC-CcCC-CCCCCChHHHHHHHhhhcCCCcEEEEcCChhHHH
Q 048725 405 DLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPL-SFKT-FEESIPPQYAIQVLDELTNGEAIISTGVGQHQMW 482 (661)
Q Consensus 405 D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~-~~~~-~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~~ 482 (661)
|++.+|++|.+.+... ...|.+++.+...+... .... ......|+++++.|++.+++|+||++|+|++++|
T Consensus 316 D~~~~l~~L~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~l~~~~~~daiv~~d~G~~~~w 388 (550)
T COG0028 316 DAKATLEALLEELKPE-------RAAWLEELLEARAAYRDLALEELADDGIKPQYVIKVLRELLPDDAIVVTDVGQHQMW 388 (550)
T ss_pred cHHHHHHHHHHhhhhc-------chHHHHHHHHHHHhhhhhhhhccCCCccCHHHHHHHHHHhCCCCeEEEeCCcHHHHH
Confidence 9999999999987632 34577666554433221 1111 1222379999999999999999999999999999
Q ss_pred HHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchhH
Q 048725 483 AAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMV 562 (661)
Q Consensus 483 ~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~ 562 (661)
..++++..+|++|++++++|+||+|+|+|||++++.|+++||+|+|||||+|++|||+|++||++|+++||+||++|||+
T Consensus 389 ~a~~~~~~~p~~~~~s~~~GtMG~glPaAIGAkla~P~r~Vv~i~GDG~F~m~~qEL~Ta~r~~lpv~ivv~nN~~~g~v 468 (550)
T COG0028 389 AARYFDFYRPRRFLTSGGLGTMGFGLPAAIGAKLAAPDRKVVAIAGDGGFMMNGQELETAVRYGLPVKIVVLNNGGYGMV 468 (550)
T ss_pred HHHhcccCCCCcEEcCCCCccccchHHHHHHHHhhCCCCcEEEEEcccHHhccHHHHHHHHHhCCCEEEEEEECCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCCCcCCcC
Q 048725 563 MQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMI 642 (661)
Q Consensus 563 ~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~~~~p~~ 642 (661)
+++|..+|........++++ + |.++|++||+++.+|++++||+++|+++++.++|+||||++|+++..+|++
T Consensus 469 ~~~q~~~~~~~~~~~~~~~~-------~-f~klAea~G~~g~~v~~~~el~~al~~al~~~~p~lidv~id~~~~~~p~~ 540 (550)
T COG0028 469 RQWQELFYGGRYSGTDLGNP-------D-FVKLAEAYGAKGIRVETPEELEEALEEALASDGPVLIDVVVDPEEAVPPMV 540 (550)
T ss_pred hHHHHHhcCCCcceeecCCc-------c-HHHHHHHcCCeeEEeCCHHHHHHHHHHHHhCCCCEEEEEEecCcccCCCCC
Confidence 99999888754455555541 3 999999999999999999999999999999999999999999986678888
Q ss_pred CCCCcc
Q 048725 643 PSGGAF 648 (661)
Q Consensus 643 ~~~~~~ 648 (661)
+.+...
T Consensus 541 ~~~~~~ 546 (550)
T COG0028 541 PLGKAN 546 (550)
T ss_pred Cccchh
Confidence 765443
No 3
>PLN02470 acetolactate synthase
Probab=100.00 E-value=2e-108 Score=936.97 Aligned_cols=585 Identities=84% Similarity=1.341 Sum_probs=515.9
Q ss_pred ccccccCCCCCCCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEE
Q 048725 76 TNFSSRFAPDQPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGIC 155 (661)
Q Consensus 76 ~~~~~~~~~~~~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~ 155 (661)
|.|-|||+|+.+++++|+|++.|+++||+||||+||+++++|+++|.+.++|++|.||||++|+||||||+|+|||++||
T Consensus 1 ~~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~ 80 (585)
T PLN02470 1 ETFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGASMEIHQALTRSNCIRNVLCRHEQGEVFAAEGYAKASGKVGVC 80 (585)
T ss_pred CCcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEEE
Confidence 46999999999999999999999999999999999999999999997665799999999999999999999999999999
Q ss_pred EEccchhhHHHHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhc
Q 048725 156 IATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATS 235 (661)
Q Consensus 156 ~~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s 235 (661)
++|+|||++|+++||++||.+++|||+|+|+.++...+++.+|++|+.++++++|||++++.+++++++.+++|++.|.+
T Consensus 81 ~~t~GPG~~N~l~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s 160 (585)
T PLN02470 81 IATSGPGATNLVTGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRVIREAFFLASS 160 (585)
T ss_pred EECCCccHHHHHHHHHHHHhcCCcEEEEecCCChhhcCCCcCcccchhhhhhhheEEEEEcCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCccchHHHHHHHHHHh
Q 048725 236 GRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELT 315 (661)
Q Consensus 236 ~~~GPV~I~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~~a~~~l~~lae~l 315 (661)
+|+|||||+||.|++.++..+.+..+..+..+....+..++++.+++++++|++|+||+|++|+|+.++.+++++|+|++
T Consensus 161 ~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~A~rPvI~~G~g~~~a~~~l~~lae~~ 240 (585)
T PLN02470 161 GRPGPVLVDIPKDIQQQLAVPNWNQPMKLPGYLSRLPKPPEKSQLEQIVRLISESKRPVVYVGGGCLNSSEELREFVELT 240 (585)
T ss_pred CCCCeEEEEecCchhhhhccccccccccccccCCCCCCCCCHHHHHHHHHHHHcCCCCEEEECCChhhhHHHHHHHHHHh
Confidence 99999999999999877643221111111111111122356788999999999999999999999988889999999999
Q ss_pred CCCeeecCCCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccC
Q 048725 316 GIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKN 395 (661)
Q Consensus 316 g~PV~tt~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~ 395 (661)
++||++|++|||+||++||+++|.+|..+...+++++++||+||+||++++++.++.+..+.+..++||||+|+.+++++
T Consensus 241 ~~pv~tt~~gkg~~~~~hpl~~G~~G~~~~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~id~d~~~i~~~ 320 (585)
T PLN02470 241 GIPVASTLMGLGAFPASDELSLQMLGMHGTVYANYAVDSADLLLAFGVRFDDRVTGKLEAFASRASIVHIDIDPAEIGKN 320 (585)
T ss_pred CCCEEEccCccccCCCCCcccccCCCCCCCHHHHHHHHhCCEEEEECCCCcccccCChhhcCCCCeEEEEECCHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999988877666677778899999999999999
Q ss_pred CCCcceEeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEEEEc
Q 048725 396 KQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTG 475 (661)
Q Consensus 396 ~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d 475 (661)
+++++.|++|++.+|++|++.+...... ......|.+.+.+.+.+.....+.....+++..+++.|++.+++|.|++.|
T Consensus 321 ~~~~~~i~~D~~~~l~~L~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~d~iv~~d 399 (585)
T PLN02470 321 KQPHVSVCADVKLALQGLNKLLEERKAK-RPDFSAWRAELDEQKEKFPLSYPTFGDAIPPQYAIQVLDELTDGNAIISTG 399 (585)
T ss_pred cCCCeEEecCHHHHHHHHHHhhhhcccc-ccchHHHHHHHHHHHHhChhcccCCCCCcCHHHHHHHHHhhCCCCEEEEEC
Confidence 9999999999999999999887642110 112356877766655443322222234689999999999999999999999
Q ss_pred CChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEe
Q 048725 476 VGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLN 555 (661)
Q Consensus 476 ~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~N 555 (661)
+|++..|..++++..+|++|++++++|+|||++|+|||+++|+|+++||+++|||||+|++|||+|++++++|+++||+|
T Consensus 400 ~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~v~ivV~N 479 (585)
T PLN02470 400 VGQHQMWAAQWYKYKEPRRWLTSGGLGAMGFGLPAAIGAAAANPDAIVVDIDGDGSFIMNIQELATIHVENLPVKIMVLN 479 (585)
T ss_pred CcHHHHHHHHhcccCCCCeEEcCCccccccchHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCCC
Q 048725 556 NQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQ 635 (661)
Q Consensus 556 N~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~~ 635 (661)
|++||++++.|+..|+....+.+++.|.......+||.++|++||+++.+|++.+||+++|+++++.++|.||||++++.
T Consensus 480 N~~yg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~~~~el~~al~~a~~~~~p~lieV~i~~~ 559 (585)
T PLN02470 480 NQHLGMVVQWEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVTRKSDLREAIQKMLDTPGPYLLDVIVPHQ 559 (585)
T ss_pred CCcchHHHHHHHHHhCCceeeeecCccccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEeCCc
Confidence 99999999988777665444444444332222237999999999999999999999999999999999999999999988
Q ss_pred CCcCCcCCCCCccccccccCCCCCCC
Q 048725 636 EHVLPMIPSGGAFKDVITEGDGRTQY 661 (661)
Q Consensus 636 ~~~~p~~~~~~~~~~~~~~~~~~~~~ 661 (661)
+...|+.+.+..+..+..++|||++|
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (585)
T PLN02470 560 EHVLPMIPGGGTFKDIITEGDGRTKY 585 (585)
T ss_pred cCcCCccCCCCchhhceeccccccCC
Confidence 87778887777888899999999998
No 4
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=2.3e-102 Score=885.03 Aligned_cols=555 Identities=41% Similarity=0.748 Sum_probs=481.0
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNL 166 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~ 166 (661)
.++++|+|++.|+++||+||||+||+.+++|+++|.+.++|++|.+|||++|+||||||+|+||||+||++|+|||++|+
T Consensus 3 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~ 82 (572)
T PRK08979 3 MLSGASMIVRSLIDEGVKHIFGYPGGSVLDIYDALHEKSGIEHILVRHEQAAVHMADGYARATGKVGVVLVTSGPGATNT 82 (572)
T ss_pred cccHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHhhcCCCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEECCCchHhHH
Confidence 47899999999999999999999999999999999765579999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEec
Q 048725 167 VSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVP 246 (661)
Q Consensus 167 l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP 246 (661)
++||++||.+++|||+|+|+.++...+++.+|++|+.++++++|||+.++.+++++++.+++|++.|.++++|||||+||
T Consensus 83 l~gia~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (572)
T PRK08979 83 ITGIATAYMDSIPMVVLSGQVPSNLIGNDAFQECDMIGISRPVVKHSFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLP 162 (572)
T ss_pred HHHHHHHhhcCCCEEEEecCCCccccCCCCCcccchhHHhhhceeEEEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecC
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeecCC
Q 048725 247 KDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTLM 324 (661)
Q Consensus 247 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt~~ 324 (661)
.|++.+++......+...+.........++++.+++++++|.+||||+|++|+|+. ++.++|++|+|++|+||+||++
T Consensus 163 ~Dv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~ 242 (572)
T PRK08979 163 KDCLNPAILHPYEYPESIKMRSYNPTTSGHKGQIKRGLQALLAAKKPVLYVGGGAIISGADKQILQLAEKLNLPVVSTLM 242 (572)
T ss_pred HhHhhhhhcccccCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEEEccc
Confidence 99987665321101101000000001123577899999999999999999999996 6789999999999999999999
Q ss_pred CCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcceEec
Q 048725 325 GLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCA 404 (661)
Q Consensus 325 gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~ 404 (661)
|||+||++||+++|++|..++..+++++++||+||+||++++++.++.+..+.++.++||||.|+.++++++++++.+++
T Consensus 243 gkg~~~~~hp~~~G~~G~~~~~~~~~~~~~aD~vl~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~~ 322 (572)
T PRK08979 243 GLGAFPGTHKNSLGMLGMHGRYEANMAMHNADLIFGIGVRFDDRTTNNLEKYCPNATILHIDIDPSSISKTVRVDIPIVG 322 (572)
T ss_pred ccccCCCCCcccccCCccCCCHHHHHHHHhCCEEEEEcCCCCccccCchhhcCCCCeEEEEECCHHHhCCccCCceEEec
Confidence 99999999999999999999999999999999999999999998877766666778999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCCC-CCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEEEEcCChhHHHH
Q 048725 405 DLKLALKGINRILGGKDAE-GRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWA 483 (661)
Q Consensus 405 D~~~~L~~L~~~l~~~~~~-~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~~~ 483 (661)
|++.+|++|.+.+...... .......|.+++.+.+.............+++.++++.|++.+++|.+++.|+|++..|.
T Consensus 323 D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~ 402 (572)
T PRK08979 323 SADKVLDSMLALLDESGETNDEAAIASWWNEIEVWRSRNCLAYDKSSERIKPQQVIETLYKLTNGDAYVASDVGQHQMFA 402 (572)
T ss_pred CHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhCchhccCCCCCcCHHHHHHHHHHhcCCCeEEEECCcHHHHHH
Confidence 9999999999877542210 011224687776655443222111123358999999999999999999999999999999
Q ss_pred HhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchhHH
Q 048725 484 AQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVM 563 (661)
Q Consensus 484 ~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~ 563 (661)
.++++..++++|+.++++|+|||++|+|||+++|+|+++||+++|||||+|++|||+|++++++|+++||+||++|++++
T Consensus 403 ~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~EL~Ta~r~~lpv~~vV~NN~~y~~i~ 482 (572)
T PRK08979 403 ALYYPFDKPRRWINSGGLGTMGFGLPAAMGVKFAMPDETVVCVTGDGSIQMNIQELSTALQYDIPVKIINLNNRFLGMVK 482 (572)
T ss_pred HHhcCcCCCCeEEccCCcccccchhhHHHhhhhhCCCCeEEEEEcchHhhccHHHHHHHHHcCCCeEEEEEeCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhC-CCcEEEEEEeCCCCCcCCcC
Q 048725 564 QWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDT-PGPYLLDVIFPHQEHVLPMI 642 (661)
Q Consensus 564 ~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~-~gp~lIeV~~~~~~~~~p~~ 642 (661)
+.|+.+|+......++ ...+||+++|++||+++.+|++.+||+++|+++++. ++|.||||++++.+...|..
T Consensus 483 ~~q~~~~~~~~~~~~~-------~~~~d~~~~A~a~G~~~~~v~~~~eL~~al~~a~~~~~~p~lIev~i~~~~~~~~~~ 555 (572)
T PRK08979 483 QWQDMIYQGRHSHSYM-------DSVPDFAKIAEAYGHVGIRISDPDELESGLEKALAMKDRLVFVDINVDETEHVYPMQ 555 (572)
T ss_pred HHHHHHhCCcccccCC-------CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhcCCCcEEEEEEeCCccccCCcc
Confidence 8886655432111111 112799999999999999999999999999999985 99999999999888766766
Q ss_pred CCCCcc
Q 048725 643 PSGGAF 648 (661)
Q Consensus 643 ~~~~~~ 648 (661)
+.+..+
T Consensus 556 ~~~~~~ 561 (572)
T PRK08979 556 IRGGAM 561 (572)
T ss_pred CCCCcH
Confidence 654433
No 5
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=3.3e-102 Score=884.66 Aligned_cols=566 Identities=40% Similarity=0.723 Sum_probs=485.1
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNL 166 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~ 166 (661)
.++++|+|++.|+++||+||||+||+.+++|+++|.+.++|++|.||||++|+||||||+|+|||+|||++|+|||++|+
T Consensus 3 ~~~~a~~l~~~L~~~Gv~~vFgvpG~~~~~l~d~l~~~~~i~~i~~rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n~ 82 (574)
T PRK07979 3 MLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGLARATGEVGVVLVTSGPGATNA 82 (574)
T ss_pred cccHHHHHHHHHHHcCCCEEEEccCcchHHHHHHHHhcCCceEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCccHhhh
Confidence 47899999999999999999999999999999999764569999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEec
Q 048725 167 VSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVP 246 (661)
Q Consensus 167 l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP 246 (661)
++||++||.+++|||+|+|+.+....+++.+|++|+..+++++|||++++.+++++++.+++||+.|.++++|||||+||
T Consensus 83 l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP 162 (574)
T PRK07979 83 ITGIATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLP 162 (574)
T ss_pred HHHHHHHhhcCCCEEEEECCCChhccCCCCCceecHHHHhhcccceEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeecCC
Q 048725 247 KDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTLM 324 (661)
Q Consensus 247 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt~~ 324 (661)
.|++.+........+.............++++.+++++++|.+|+||+|++|+|+. ++.++|++|+|++|+||++|++
T Consensus 163 ~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~ 242 (574)
T PRK07979 163 KDILNPANKLPYVWPESVSMRSYNPTTQGHKGQIKRALQTLVAAKKPVVYVGGGAINAACHQQLKELVEKLNLPVVSSLM 242 (574)
T ss_pred hhhhhhhhccccccCcccccccCCCCCCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHhCCCEEEccc
Confidence 99986543211100101000000011124678899999999999999999999996 5689999999999999999999
Q ss_pred CCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcceEec
Q 048725 325 GLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCA 404 (661)
Q Consensus 325 gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~ 404 (661)
|||+||++||+++|++|..++..+++++++||+||+||++++++.++.+..+.++.++||||+|+.++++++.+++.+.+
T Consensus 243 gkg~~p~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~~ 322 (574)
T PRK07979 243 GLGAFPATHRQSLGMLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNNLAKYCPNATVLHIDIDPTSISKTVTADIPIVG 322 (574)
T ss_pred cCCCCCCCCcccccCCcCCCCHHHHHHHHhCCEEEEeCCCCcccccCChhhcCCCCeEEEEECCHHHhCCcccCCeEEec
Confidence 99999999999999999999999999999999999999999988887766666778999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCCC-CCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEEEEcCChhHHHH
Q 048725 405 DLKLALKGINRILGGKDAE-GRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWA 483 (661)
Q Consensus 405 D~~~~L~~L~~~l~~~~~~-~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~~~ 483 (661)
|++.+|++|++.+...... .......|.+++++.+.............+++..+++.|++.+++|.+++.|+|++..|.
T Consensus 323 D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~ 402 (574)
T PRK07979 323 DARQVLEQMLELLSQESAHQPLDEIRDWWQQIEQWRARQCLKYDTHSEKIKPQAVIETLWRLTKGDAYVTSDVGQHQMFA 402 (574)
T ss_pred CHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChhhccCCCCCcCHHHHHHHHHhhcCCCEEEEeCCcHHHHHH
Confidence 9999999999877542211 112235677666555433222211123458999999999999999999999999999999
Q ss_pred HhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchhHH
Q 048725 484 AQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVM 563 (661)
Q Consensus 484 ~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~ 563 (661)
.+++++.+|++|++++++|+|||++|+|||+++|+|+++||+++|||||+|++|||+|++||++|+++||+||++||+++
T Consensus 403 ~~~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~r~~l~v~ivV~NN~~yg~i~ 482 (574)
T PRK07979 403 ALYYPFDKPRRWINSGGLGTMGFGLPAALGVKMALPEETVVCVTGDGSIQMNIQELSTALQYELPVLVLNLNNRYLGMVK 482 (574)
T ss_pred HHhcccCCCCeEEeCCCccchhhHHHHHHHHHHhCCCCeEEEEEcchhhhccHHHHHHHHHhCCCeEEEEEeCchhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhC---CCcEEEEEEeCCCCCcCC
Q 048725 564 QWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDT---PGPYLLDVIFPHQEHVLP 640 (661)
Q Consensus 564 ~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~---~gp~lIeV~~~~~~~~~p 640 (661)
++|+..|.......++ ...+||.++|++||+++.+|++.+||+++|+++++. ++|.||||++++.+...|
T Consensus 483 ~~q~~~~~~~~~~~~~-------~~~~d~~~iA~a~G~~g~~v~~~~eL~~al~~a~~~~~~~~p~lIeV~i~~~~~~~~ 555 (574)
T PRK07979 483 QWQDMIYSGRHSQSYM-------QSLPDFVRLAEAYGHVGIQISHPDELESKLSEALEQVRNNRLVFVDVTVDGSEHVYP 555 (574)
T ss_pred HHHHHhcCCccccccC-------CCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhccCCCCcEEEEEEECCccCcCC
Confidence 8886655432111111 012799999999999999999999999999999985 899999999998887767
Q ss_pred cCCCCCccccccccCCCCC
Q 048725 641 MIPSGGAFKDVITEGDGRT 659 (661)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~ 659 (661)
+.+.+..+..+....++|+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~ 574 (574)
T PRK07979 556 MQIRGGGMDEMWLSKTERT 574 (574)
T ss_pred CcCCCCchhhhhccccCCC
Confidence 6665544444333333553
No 6
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=1.1e-101 Score=881.41 Aligned_cols=557 Identities=42% Similarity=0.751 Sum_probs=482.2
Q ss_pred CCCCCCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchh
Q 048725 83 APDQPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPG 162 (661)
Q Consensus 83 ~~~~~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG 162 (661)
.|...++++|+|++.|+++||+||||+||+.+++|+++|.+.++|++|.||||++|+||||||+|+||||+||++|+|||
T Consensus 16 ~~~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~AdgYar~tg~~gv~~~t~GpG 95 (587)
T PRK06965 16 PPAADSIGAEILMKALAAEGVEFIWGYPGGAVLYIYDELYKQDKIQHVLVRHEQAAVHAADGYARATGKVGVALVTSGPG 95 (587)
T ss_pred CCchhccHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCCeEEEECCCcc
Confidence 35667899999999999999999999999999999999987667999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEE
Q 048725 163 ATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVL 242 (661)
Q Consensus 163 ~~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~ 242 (661)
++|+++||++||.+++|||+|+|+.+....+++.+|++||.++++++|||++++.+++++++.+++|++.|+++++||||
T Consensus 96 ~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~ 175 (587)
T PRK06965 96 VTNAVTGIATAYMDSIPMVVISGQVPTAAIGQDAFQECDTVGITRPIVKHNFLVKDVRDLAETVKKAFYIARTGRPGPVV 175 (587)
T ss_pred HHHHHHHHHHHhhcCCCEEEEecCCCccccCCCCcccccHHHHhcCCcceeEEeCCHHHHHHHHHHHHHHHhcCCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCee
Q 048725 243 IDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVA 320 (661)
Q Consensus 243 I~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~ 320 (661)
|+||.|++.+++......+.....+ .....++++.+++++++|.+||||+|++|+|+. ++.+++.+|+|++|+||+
T Consensus 176 l~iP~Dv~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~g~pv~ 253 (587)
T PRK06965 176 VDIPKDVSKTPCEYEYPKSVEMRSY--NPVTKGHSGQIRKAVSLLLSAKRPYIYTGGGVILANASRELRQLADLLGYPVT 253 (587)
T ss_pred EEeChhhhhChhccccCccccccCC--CCCCCCCHHHHHHHHHHHHhcCCCEEEECCCccccchHHHHHHHHHHhCCCEE
Confidence 9999999877653211111111111 011123678899999999999999999999996 678999999999999999
Q ss_pred ecCCCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCC-CCeEEEEcCCchhhccCCCCc
Q 048725 321 STLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFAS-RAKIVHIDIDSAEIGKNKQPH 399 (661)
Q Consensus 321 tt~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~-~~~vi~Id~d~~~i~~~~~~~ 399 (661)
+|++|||+||++||+++|++|..++..+++++++||+||+||++++++.++++..|.+ +.++||||.|+.+++++++.+
T Consensus 254 tt~~gkg~~~~~hpl~~G~~G~~~~~~a~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~ 333 (587)
T PRK06965 254 NTLMGLGAYPASDKKFLGMLGMHGTYEANMAMQHCDVLIAIGARFDDRVIGNPAHFASRPRKIIHIDIDPSSISKRVKVD 333 (587)
T ss_pred EccccCCCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEECCCCcccccCChhhcCCCCceEEEEeCCHHHhCCcCCCC
Confidence 9999999999999999999999999999999999999999999999887765544544 478999999999999999999
Q ss_pred ceEeccHHHHHHHHHHHhcCCCC-CCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEEEEcCCh
Q 048725 400 VSVCADLKLALKGINRILGGKDA-EGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQ 478 (661)
Q Consensus 400 ~~i~~D~~~~L~~L~~~l~~~~~-~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~ 478 (661)
+.+++|++.+|++|++.+..... ........|.+++.+.+......+......+++..+++.|++.+++|+|++.|+|+
T Consensus 334 ~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~ii~~d~G~ 413 (587)
T PRK06965 334 IPIVGDVKEVLKELIEQLQTAEHGPDADALAQWWKQIEGWRSRDCLKYDRESEIIKPQYVVEKLWELTDGDAFVCSDVGQ 413 (587)
T ss_pred eEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChhhccccCCCcCHHHHHHHHHhhCCCCeEEEeCCcH
Confidence 99999999999999987753211 11122456766665554332222211234589999999999999999999999999
Q ss_pred hHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCc
Q 048725 479 HQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQH 558 (661)
Q Consensus 479 ~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g 558 (661)
+..|..+++++.+|++|+.++++|+|||++|+|||+++|+|+++||+|+|||||+|++|||+|++|+++|+++||+||++
T Consensus 414 ~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDGsf~m~~~eL~Ta~r~~lpviivV~NN~~ 493 (587)
T PRK06965 414 HQMWAAQFYRFNEPRRWINSGGLGTMGVGLPYAMGIKMAHPDDDVVCITGEGSIQMCIQELSTCLQYDTPVKIISLNNRY 493 (587)
T ss_pred HHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchhhhcCHHHHHHHHHcCCCeEEEEEECCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-CCCcEEEEEEeCCCCC
Q 048725 559 LGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-TPGPYLLDVIFPHQEH 637 (661)
Q Consensus 559 ~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-~~gp~lIeV~~~~~~~ 637 (661)
|+++++.|+..+..+....++. ..+||.++|++||+++++|++.+||+++|+++++ .++|+||||++++.+.
T Consensus 494 ~~~i~~~q~~~~~~~~~~~~~~-------~~~d~~~iA~a~G~~~~~v~~~~eL~~al~~a~~~~~~p~lieV~i~~~~~ 566 (587)
T PRK06965 494 LGMVRQWQEIEYSKRYSHSYMD-------ALPDFVKLAEAYGHVGMRIEKTSDVEPALREALRLKDRTVFLDFQTDPTEN 566 (587)
T ss_pred chHHHHHHHHhcCCCccccCCC-------CCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhcCCCcEEEEEEeccccc
Confidence 9999888866554321111111 1279999999999999999999999999999998 4899999999998887
Q ss_pred cCCcCCCCCcc
Q 048725 638 VLPMIPSGGAF 648 (661)
Q Consensus 638 ~~p~~~~~~~~ 648 (661)
..|+++.+..+
T Consensus 567 ~~p~~~~~~~~ 577 (587)
T PRK06965 567 VWPMVQAGKGI 577 (587)
T ss_pred cCCccCCCCch
Confidence 77777654433
No 7
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=100.00 E-value=2.6e-101 Score=876.97 Aligned_cols=547 Identities=30% Similarity=0.520 Sum_probs=471.8
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHh-CCcEEEEEccchhhHH
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS-GKPGICIATSGPGATN 165 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~t-g~~gv~~~tsGpG~~N 165 (661)
.|+++|+|++.|+++||+||||+||+.+++|+++|.++++|++|.||||++|+||||||+|+| |++|||++|+|||++|
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~V~~rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N 81 (588)
T TIGR01504 2 RMRAVDAAVYVLEKEGITTAFGVPGAAINPFYSALKAHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD 81 (588)
T ss_pred CccHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHhhcCCCcEEeeCCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHH
Confidence 468999999999999999999999999999999997665799999999999999999999999 9999999999999999
Q ss_pred HHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEe
Q 048725 166 LVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDV 245 (661)
Q Consensus 166 ~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~i 245 (661)
+++||++||.+++|||+|+|+.+....+++.+|++|+.++++++|||++++.+++++++++++||+.|+++|+|||||+|
T Consensus 82 ~~~gla~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~D~~~~~~~vtk~~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~i 161 (588)
T TIGR01504 82 MITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIAAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLIDL 161 (588)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCCcccccCHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEe
Confidence 99999999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeecC
Q 048725 246 PKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTL 323 (661)
Q Consensus 246 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt~ 323 (661)
|.|++.+++.......... ......++++.+++++++|.+||||+|++|+|+. ++.+++.+|+|++|+||++|+
T Consensus 162 P~Dv~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~~g~PV~tt~ 237 (588)
T TIGR01504 162 PFDVQVAEIEFDPDTYEPL----PVYKPAATRAQIEKAVEMLNAAERPLIVAGGGVINADAADLLQEFAELTGVPVIPTL 237 (588)
T ss_pred CcchhhcccCCcccccccc----cCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCcchhhhHHHHHHHHHHhCCCeEEcC
Confidence 9999876642110000001 1111134678899999999999999999999996 578999999999999999999
Q ss_pred CCCCCCCCCCCCCCcccCCC-CcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcceE
Q 048725 324 MGLGSFPGTDELSLQMLGMH-GTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSV 402 (661)
Q Consensus 324 ~gkg~~p~~hpl~lg~~G~~-g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 402 (661)
+|||+||++||+++|++|.. ++..+++++++||+||+||++++++.++.+..+.++.++||||.|+.++++++.+++.|
T Consensus 238 ~gkg~~p~~hpl~~G~~g~~~~~~~a~~~l~~aD~iL~lG~~l~~~~t~~~~~~~~~~~~I~id~d~~~i~~~~~~~~~i 317 (588)
T TIGR01504 238 MGWGCIPDDHELMAGMVGLQTSHRYGNATLLESDFVFGIGNRWANRHTGSVDVYTEGRKFVHVDIEPTQIGRVFAPDLGI 317 (588)
T ss_pred ccCCCCCCCChhhCcCCCCCCCcHHHHHHHHhCCEEEEECCCCCccccCcccccCCCCeEEEeeCCHHHhcCcCCCCeEE
Confidence 99999999999999999876 67888899999999999999999888877666677788999999999999999999999
Q ss_pred eccHHHHHHHHHHHhcCCCC-CCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEEEEcCChhHH
Q 048725 403 CADLKLALKGINRILGGKDA-EGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQM 481 (661)
Q Consensus 403 ~~D~~~~L~~L~~~l~~~~~-~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~ 481 (661)
++|++.+|++|.+.+..... ........|.+++.+.+.............+++.++++.|++.+++|.+|+.|+|++..
T Consensus 318 ~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~l~~~l~~d~ivv~D~G~~~~ 397 (588)
T TIGR01504 318 VSDAKAALKLLVEVAQELKKAGRLPDRSEWAADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGRDVCYVTTIGLSQI 397 (588)
T ss_pred EeCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhCcccccCCCCCcCHHHHHHHHHHhCCCCCEEEECCcHHHH
Confidence 99999999999887643211 11112356877666544332211111233589999999999999999999999999999
Q ss_pred HHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchh
Q 048725 482 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGM 561 (661)
Q Consensus 482 ~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~ 561 (661)
|..++++..+|++|++++++|+|||++|+|||+++|.|+++||+|+|||||+|++|||+|++||++|+++||+||++||+
T Consensus 398 ~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~pdr~Vv~i~GDG~f~m~~~EL~Ta~r~~lpvv~iV~NN~~yg~ 477 (588)
T TIGR01504 398 AGAQMLHVYKPRHWINCGQAGPLGWTIPAALGVCAADPKRNVVALSGDYDFQFMIEELAVGAQHNIPYIHVLVNNAYLGL 477 (588)
T ss_pred HHHHhccccCCCcEEeCCccccccchHhHHHhhhhhCCCCcEEEEEcchHhhccHHHHHHHHHhCCCeEEEEEeCCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccccccC--CCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh----CCCcEEEEEEeCCC
Q 048725 562 VMQWEDRFYKANRAHTYLG--DPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD----TPGPYLLDVIFPHQ 635 (661)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~g--~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~----~~gp~lIeV~~~~~ 635 (661)
+++.|..++........+. .+.......+||.++|++||+++.+|++.+||+++|+++++ .++|.||||+++++
T Consensus 478 i~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~a~~~~~~~~~p~lIeV~i~~~ 557 (588)
T TIGR01504 478 IRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVFKPEEIAPAFEQAKALMAEHRVPVVVEVILERV 557 (588)
T ss_pred HHHHHHHhcccccceeeccccccccccCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhhcccCCCcEEEEEEeccc
Confidence 9888865443211010000 00001111379999999999999999999999999999995 78999999999988
Q ss_pred CC
Q 048725 636 EH 637 (661)
Q Consensus 636 ~~ 637 (661)
+.
T Consensus 558 ~~ 559 (588)
T TIGR01504 558 TN 559 (588)
T ss_pred cC
Confidence 75
No 8
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=3.9e-101 Score=876.58 Aligned_cols=551 Identities=46% Similarity=0.805 Sum_probs=478.1
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 048725 86 QPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATN 165 (661)
Q Consensus 86 ~~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N 165 (661)
..++++|+|++.|+++||+||||+||+++++|+++|.+.++|++|.||||++|+||||||+|+||||+||++|+|||++|
T Consensus 9 ~~~t~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~I~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N 88 (595)
T PRK09107 9 RQMTGAEMVVQALKDQGVEHIFGYPGGAVLPIYDEIFQQDDIQHILVRHEQGAGHAAEGYARSTGKPGVVLVTSGPGATN 88 (595)
T ss_pred hhhhHHHHHHHHHHHCCCCEEEEccCcchHHHHHHHhhcCCCeEEEECChHHHHHHHHHHHHHhCCCEEEEECCCccHhH
Confidence 45799999999999999999999999999999999977667999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEe
Q 048725 166 LVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDV 245 (661)
Q Consensus 166 ~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~i 245 (661)
+++||++||.+++|||+|+|+.++...+.+.+|++|+..+++++|||++++.+++++++.+++|++.|+++|+|||||+|
T Consensus 89 ~l~gia~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~vtk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~i 168 (595)
T PRK09107 89 AVTPLQDALMDSIPLVCITGQVPTHLIGSDAFQECDTVGITRPCTKHNWLVKDVNDLARVIHEAFHVATSGRPGPVVVDI 168 (595)
T ss_pred HHHHHHHHhhcCCCEEEEEcCCChhhcCCCCCcccchhhhhhhheEEEEEeCCHHHHHHHHHHHHHHhcCCCCceEEEec
Confidence 99999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--c--hHHHHHHHHHHhCCCee
Q 048725 246 PKDIQQQLAVPNWNQPIK-LPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--N--SSEELRKFVELTGIPVA 320 (661)
Q Consensus 246 P~dv~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~--a~~~l~~lae~lg~PV~ 320 (661)
|.|++.++.....+.... ...+. ....++++.+++++++|.+|+||+|++|+|+. + +.+++++|+|++|+||+
T Consensus 169 P~Dv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~a~~~L~~A~rPvil~G~g~~~~~~~a~~~l~~lae~lg~pv~ 246 (595)
T PRK09107 169 PKDVQFATGTYTPPQKAPVHVSYQ--PKVKGDAEAITEAVELLANAKRPVIYSGGGVINSGPEASRLLRELVELTGFPIT 246 (595)
T ss_pred CCChhhcccccccccccccccCCC--CCCCCCHHHHHHHHHHHHhCCCcEEEECCcccccchhHHHHHHHHHHHHCCCEE
Confidence 999987654211111000 01110 11134678899999999999999999999985 2 67999999999999999
Q ss_pred ecCCCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcc
Q 048725 321 STLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHV 400 (661)
Q Consensus 321 tt~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~ 400 (661)
+|++|||+||++||+++|++|..++..+++++++||+||+||++++++.++.+..+.++.++||||+|+..++++++.++
T Consensus 247 tt~~gkg~~p~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~i~~~~~~~~ 326 (595)
T PRK09107 247 STLMGLGAYPASGKNWLGMLGMHGTYEANMAMHDCDVMLCVGARFDDRITGRLDAFSPNSKKIHIDIDPSSINKNVRVDV 326 (595)
T ss_pred ECccccccCCCCCCcccCCCCCCccHHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHhCCCCCCCe
Confidence 99999999999999999999998999999999999999999999998888776667777889999999999999999999
Q ss_pred eEeccHHHHHHHHHHHhcCCCCC-CCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcC-CCcEEEEcCCh
Q 048725 401 SVCADLKLALKGINRILGGKDAE-GRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTN-GEAIISTGVGQ 478 (661)
Q Consensus 401 ~i~~D~~~~L~~L~~~l~~~~~~-~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~-~d~iv~~d~G~ 478 (661)
.+++|++.+|++|++.+...... .......|.+++.+.+...........+.+++..+++.|++.++ +|.+++.|+|+
T Consensus 327 ~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~d~iv~~d~G~ 406 (595)
T PRK09107 327 PIIGDVGHVLEDMLRLWKARGKKPDKEALADWWGQIARWRARNSLAYTPSDDVIMPQYAIQRLYELTKGRDTYITTEVGQ 406 (595)
T ss_pred EEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChhhccCCCCCcCHHHHHHHHHHhCCCCCeEEEECCcH
Confidence 99999999999999887542211 01123567666555443322111112346899999999999996 58899999999
Q ss_pred hHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCc
Q 048725 479 HQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQH 558 (661)
Q Consensus 479 ~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g 558 (661)
+..|..++++..+|++|++++++|+|||++|+|||+++|+|+++||+|+|||||+|++|||+|++||++|+++||+||++
T Consensus 407 ~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDG~f~m~~~EL~Ta~r~~lpvi~vV~NN~~ 486 (595)
T PRK09107 407 HQMWAAQFFGFEEPNRWMTSGGLGTMGYGLPAALGVQIAHPDALVIDIAGDASIQMCIQEMSTAVQYNLPVKIFILNNQY 486 (595)
T ss_pred HHHHHHHhcccCCCCeEEcCCCchhhhhhHHHHHHHHHhCCCCeEEEEEcCchhhccHHHHHHHHHhCCCeEEEEEeCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCCCc
Q 048725 559 LGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHV 638 (661)
Q Consensus 559 ~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~~~ 638 (661)
|+++++.|+.+++......++ ...+||+++|++||+++.+|++.+||+++|+++++.++|+||||++++.+..
T Consensus 487 y~~i~~~q~~~~~~~~~~~~~-------~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIeV~i~~~~~~ 559 (595)
T PRK09107 487 MGMVRQWQQLLHGNRLSHSYT-------EAMPDFVKLAEAYGAVGIRCEKPGDLDDAIQEMIDVDKPVIFDCRVANLENC 559 (595)
T ss_pred cHHHHHHHHHHhCCccccccC-------CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEecCcccc
Confidence 999988886655432111111 0127999999999999999999999999999999999999999999987766
Q ss_pred CCcCCCC
Q 048725 639 LPMIPSG 645 (661)
Q Consensus 639 ~p~~~~~ 645 (661)
.|.++.+
T Consensus 560 ~~~~~~~ 566 (595)
T PRK09107 560 FPMIPSG 566 (595)
T ss_pred CCccCCC
Confidence 6666544
No 9
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=100.00 E-value=7.8e-101 Score=878.94 Aligned_cols=552 Identities=46% Similarity=0.782 Sum_probs=478.9
Q ss_pred CCCCCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcC---CCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccc
Q 048725 84 PDQPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRS---NNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSG 160 (661)
Q Consensus 84 ~~~~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~---~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsG 160 (661)
++.+++++|+|++.|+++||+||||+||+.+++|+++|.+. ++|++|.+|||++|+|||+||+|+|||||||++|+|
T Consensus 15 ~~~~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~~~i~~i~~rhE~~Aa~aA~gyar~tgk~gv~~~t~G 94 (616)
T PRK07418 15 TPQRATGAYALMDSLKRHGVKHIFGYPGGAILPIYDELYKAEAEGWLKHILVRHEQGAAHAADGYARATGKVGVCFGTSG 94 (616)
T ss_pred CCccccHHHHHHHHHHHcCCCEEEeCcCcchHHHHHHHHhcccCCCceEEEeccHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 45678999999999999999999999999999999999752 359999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCce
Q 048725 161 PGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGP 240 (661)
Q Consensus 161 pG~~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GP 240 (661)
||++|+++||++|+.+++|||+|+|+.++...+++.+|++|+..+++++|||+++|.+++++++++++||+.|+++|+||
T Consensus 95 PG~~n~l~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~~Qe~d~~~~~~~vtk~~~~v~~~~~i~~~l~~A~~~A~~~~~GP 174 (616)
T PRK07418 95 PGATNLVTGIATAQMDSVPMVVITGQVPRPAIGTDAFQETDIFGITLPIVKHSYVVRDPSDMARIVAEAFHIASSGRPGP 174 (616)
T ss_pred ccHHHHHHHHHHHHhcCCCEEEEecCCCccccCCCCcccccHHHHhhhcceeEEEeCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCC
Q 048725 241 VLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIP 318 (661)
Q Consensus 241 V~I~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~P 318 (661)
|||+||.|++.+++......+........+....++++.+++++++|++||||||++|+|+. ++.++|++|||++|+|
T Consensus 175 v~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~AkrPvI~~G~g~~~~~a~~~l~~lae~l~~p 254 (616)
T PRK07418 175 VLIDIPKDVGQEEFDYVPVEPGSVKPPGYRPTVKGNPRQINAALKLIEEAERPLLYVGGGAISAGAHAELKELAERFQIP 254 (616)
T ss_pred EEEecchhhhhchhcccccCccccccCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcCcccHHHHHHHHHHHHCCC
Confidence 99999999987654211000000000000111245788999999999999999999999996 6789999999999999
Q ss_pred eeecCCCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCC
Q 048725 319 VASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQP 398 (661)
Q Consensus 319 V~tt~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~ 398 (661)
|++|++|||+||++||+++|.+|..|+..+++++++||+||+||++++++.++.+..|.++.++||||+|+.++++++.+
T Consensus 255 V~tt~~gkg~~p~~hpl~~G~~G~~g~~~~~~~l~~aDlvL~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~ig~~~~~ 334 (616)
T PRK07418 255 VTTTLMGKGAFDEHHPLSVGMLGMHGTAYANFAVTECDLLIAVGARFDDRVTGKLDEFASRAKVIHIDIDPAEVGKNRRP 334 (616)
T ss_pred EEEccCCCcCCCCCCcccccCCCCCCCHHHHHHHHhCCEEEEEcCCCCccccCChhhcCCCCeEEEEeCCHHHhCCccCC
Confidence 99999999999999999999999999999999999999999999999988877666677778999999999999999999
Q ss_pred cceEeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEEEEcCCh
Q 048725 399 HVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQ 478 (661)
Q Consensus 399 ~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~ 478 (661)
++.+.+|++.+|++|++.+..... ......|.+++++.+............++++.++++.|++.++ +.+++.|+|+
T Consensus 335 ~~~i~~D~~~~l~~L~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~l~~~~~-d~i~~~D~G~ 411 (616)
T PRK07418 335 DVPIVGDVRKVLVKLLERSLEPTT--PPRTQAWLERINRWKQDYPLVVPPYEGEIYPQEVLLAVRDLAP-DAYYTTDVGQ 411 (616)
T ss_pred CeEEecCHHHHHHHHHHhhhcccc--ccchHHHHHHHHHHHHhCcccccCCCCCcCHHHHHHHHHhhCC-CcEEEECChH
Confidence 999999999999999988754211 1123568777766655432211222346999999999999988 6999999999
Q ss_pred hHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCc
Q 048725 479 HQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQH 558 (661)
Q Consensus 479 ~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g 558 (661)
+..|..++++ .+|++|++++++|+||+++|+|||+++|.|+|+||+|+|||||+|++|||+|++||++|+++||+||++
T Consensus 412 ~~~~~~~~~~-~~p~~~~~s~~~g~mG~glpaAiGA~lA~p~r~Vv~i~GDG~f~m~~~eL~Ta~r~~lpvi~vV~NN~~ 490 (616)
T PRK07418 412 HQMWAAQFLR-NGPRRWISSAGLGTMGFGMPAAMGVKVALPDEEVICIAGDASFLMNIQELGTLAQYGINVKTVIINNGW 490 (616)
T ss_pred HHHHHHHhhh-cCCCeEEcCCCccccccHHHHHHHHHHhCCCCcEEEEEcchHhhhhHHHHHHHHHhCCCeEEEEEECCc
Confidence 9999999998 678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCCCc
Q 048725 559 LGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHV 638 (661)
Q Consensus 559 ~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~~~ 638 (661)
||+++..|+..|+.......+.. ..+||+++|++||+++++|++++||+++|+++++.++|+||||++++++..
T Consensus 491 ~g~i~~~q~~~~~~~~~~~~~~~------~~~d~~~~A~a~G~~g~~V~~~~el~~al~~a~~~~~p~lIeV~i~~~~~~ 564 (616)
T PRK07418 491 QGMVRQWQESFYGERYSASNMEP------GMPDFVKLAEAFGVKGMVISERDQLKDAIAEALAHDGPVLIDVHVRRDENC 564 (616)
T ss_pred chHHHHHHHHhcCCCceeecCCC------CCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEecCcccc
Confidence 99998887655543211111110 127999999999999999999999999999999999999999999988866
Q ss_pred CCcCCCC
Q 048725 639 LPMIPSG 645 (661)
Q Consensus 639 ~p~~~~~ 645 (661)
+|+.+.+
T Consensus 565 ~~~~~~~ 571 (616)
T PRK07418 565 YPMVPPG 571 (616)
T ss_pred CCccCCC
Confidence 6655543
No 10
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=7.4e-101 Score=873.59 Aligned_cols=557 Identities=42% Similarity=0.741 Sum_probs=479.7
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNL 166 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~ 166 (661)
.++|+|+|++.|+++||++|||+||+.+++|+++|.++++|++|.+|||++|+||||||+|+||||+||++|+|||++|+
T Consensus 3 ~~~~a~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N~ 82 (574)
T PRK06466 3 LLSGAEMLVRALRDEGVEYIYGYPGGAVLHIYDALFKQDKVEHILVRHEQAATHMADGYARATGKTGVVLVTSGPGATNA 82 (574)
T ss_pred cccHHHHHHHHHHHcCCCEEEECCCcchhHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCccHHHH
Confidence 46899999999999999999999999999999999766679999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEec
Q 048725 167 VSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVP 246 (661)
Q Consensus 167 l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP 246 (661)
++||++||.+++|||+|+|+.+....+++.+|++|+..+++++|||++++.+++++++.+++||+.|+++|+|||||+||
T Consensus 83 l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~itk~s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP 162 (574)
T PRK06466 83 ITGIATAYMDSIPMVVLSGQVPSTLIGEDAFQETDMVGISRPIVKHSFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIP 162 (574)
T ss_pred HHHHHHHHhcCCCEEEEecCCCccccCCCcccccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeecCC
Q 048725 247 KDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTLM 324 (661)
Q Consensus 247 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt~~ 324 (661)
.|++.+........+...+.........++++.+++++++|.+||||+|++|+|+. ++.+++.+|||++|+||++|++
T Consensus 163 ~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~g~pv~tt~~ 242 (574)
T PRK06466 163 KDMTNPAEKFEYEYPKKVKLRSYSPAVRGHSGQIRKAVEMLLAAKRPVIYSGGGVVLGNASALLTELAHLLNLPVTNTLM 242 (574)
T ss_pred HhHhhhhhccccccCcccccccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEEEcCc
Confidence 99975432111000000000000011123567899999999999999999999986 5689999999999999999999
Q ss_pred CCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcceEec
Q 048725 325 GLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCA 404 (661)
Q Consensus 325 gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~ 404 (661)
|||+||++||+++|++|..+...+++++++||+||+||++++++.++++..+.++.++||||.|+.++++++++++.+.+
T Consensus 243 ~kg~~~~~hp~~~G~~G~~~~~~~~~~l~~aD~il~vG~~~~~~~~~~~~~~~~~~~vi~id~d~~~i~~~~~~~~~i~~ 322 (574)
T PRK06466 243 GLGGFPGTDRQFLGMLGMHGTYEANMAMHHADVILAVGARFDDRVTNGPAKFCPNAKIIHIDIDPASISKTIKADIPIVG 322 (574)
T ss_pred cCCCCCCCChhhcCCCccccCHHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHhCCccCCCeEEec
Confidence 99999999999999999988899999999999999999999988887776666777999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCC-CCCCCcHHHHHHHHHHHhhCCC-CcC-CCCCCCChHHHHHHHhhhcCCCcEEEEcCChhHH
Q 048725 405 DLKLALKGINRILGGKDA-EGRFDFSAWREELDEQKVKYPL-SFK-TFEESIPPQYAIQVLDELTNGEAIISTGVGQHQM 481 (661)
Q Consensus 405 D~~~~L~~L~~~l~~~~~-~~~~~~~~w~~~l~~~~~~~~~-~~~-~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~ 481 (661)
|++.+|+.|++.+..... ........|.+++.+.+..... ... .....+++.++++.|++.+++|.|++.|+|++..
T Consensus 323 D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~iv~~d~g~~~~ 402 (574)
T PRK06466 323 PVESVLTEMLAILKEIGEKPDKEALAAWWKQIDEWRGRHGLFPYDKGDGGIIKPQQVVETLYEVTNGDAYVTSDVGQHQM 402 (574)
T ss_pred CHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhCcchhcccCCCCCcCHHHHHHHHHhhCCCCeEEEECCcHHHH
Confidence 999999999887753211 0011234677666655443221 111 1234589999999999999999999999999999
Q ss_pred HHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchh
Q 048725 482 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGM 561 (661)
Q Consensus 482 ~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~ 561 (661)
|..++++..+|++|+.++++|+|||++|+|||+++|.|+++||+|+|||||+|++|||+|+++|++|+++||+||++|++
T Consensus 403 ~~~~~~~~~~p~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i~GDG~f~m~~~eL~Ta~r~~lpv~ivV~NN~~y~~ 482 (574)
T PRK06466 403 FAAQYYKFNKPNRWINSGGLGTMGFGLPAAMGVKLAFPDQDVACVTGEGSIQMNIQELSTCLQYGLPVKIINLNNGALGM 482 (574)
T ss_pred HHHHhccccCCCcEEcCCCcchhhchHHHHHHHHHhCCCCeEEEEEcchhhhccHHHHHHHHHhCCCeEEEEEeCCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhC-CCcEEEEEEeCCCCCcCC
Q 048725 562 VMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDT-PGPYLLDVIFPHQEHVLP 640 (661)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~-~gp~lIeV~~~~~~~~~p 640 (661)
+++.|+..|.......++ ...+||.++|++||+++.+|++.+||+++|+++++. ++|+||||++++.+...|
T Consensus 483 i~~~q~~~~~~~~~~~~~-------~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~p~lIev~i~~~~~~~~ 555 (574)
T PRK06466 483 VRQWQDMQYEGRHSHSYM-------ESLPDFVKLAEAYGHVGIRITDLKDLKPKLEEAFAMKDRLVFIDIYVDRSEHVYP 555 (574)
T ss_pred HHHHHHHhcCCceeecCC-------CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhcCCCcEEEEEEeCCccccCC
Confidence 998886655432111111 012799999999999999999999999999999986 999999999998887777
Q ss_pred cCCCCCcccc
Q 048725 641 MIPSGGAFKD 650 (661)
Q Consensus 641 ~~~~~~~~~~ 650 (661)
..+.+..+..
T Consensus 556 ~~~~~~~~~~ 565 (574)
T PRK06466 556 MQIADGSMRD 565 (574)
T ss_pred ccCCCCchhh
Confidence 7766544443
No 11
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=100.00 E-value=4.7e-100 Score=871.90 Aligned_cols=561 Identities=49% Similarity=0.832 Sum_probs=484.7
Q ss_pred cCCCCCCCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccc
Q 048725 81 RFAPDQPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSG 160 (661)
Q Consensus 81 ~~~~~~~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsG 160 (661)
|.-....++++|+|++.|+++||+||||+||+.+++|+++|.++++|++|.||||++|+|||+||+|+||+|+||++|+|
T Consensus 24 ~~~~~~~~~~a~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~G 103 (612)
T PRK07789 24 RIVAPERMTGAQAVVRSLEELGVDVVFGIPGGAILPVYDPLFDSTKVRHVLVRHEQGAGHAAEGYAQATGRVGVCMATSG 103 (612)
T ss_pred cccccccccHHHHHHHHHHHCCCCEEEEcCCcchHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 33344468999999999999999999999999999999999776679999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCce
Q 048725 161 PGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGP 240 (661)
Q Consensus 161 pG~~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GP 240 (661)
||++|+++||++||.+++|||+|+|+.+....+++.+|++|+.++++++|||++++.+++++++++++||+.|+++|+||
T Consensus 104 PG~~N~l~gl~~A~~~~~PllvI~G~~~~~~~~~~~~q~~d~~~l~~~~tk~s~~v~~~~~i~~~l~~A~~~A~~~~~GP 183 (612)
T PRK07789 104 PGATNLVTPIADANMDSVPVVAITGQVGRGLIGTDAFQEADIVGITMPITKHNFLVTDADDIPRVIAEAFHIASTGRPGP 183 (612)
T ss_pred ccHHHHHHHHHHHhhcCCCEEEEecCCCccccCCCcCcccchhhhhhcceeEEEEcCCHHHHHHHHHHHHHHHhcCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCC
Q 048725 241 VLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIP 318 (661)
Q Consensus 241 V~I~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~P 318 (661)
|||+||.|++.+++...+.....++.. +....++.+.+++++++|.+||||+||+|+|+. ++.+++++|+|++|+|
T Consensus 184 V~l~iP~Dv~~~~~~~~~~~~~~~~~~--~~~~~p~~~~i~~~~~~L~~AkrPlIl~G~g~~~~~a~~~l~~lae~l~~P 261 (612)
T PRK07789 184 VLVDIPKDALQAQTTFSWPPRMDLPGY--RPVTKPHGKQIREAAKLIAAARRPVLYVGGGVIRAEASAELRELAELTGIP 261 (612)
T ss_pred EEEEEccchhhcccccccCccccccCC--CCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHCCC
Confidence 999999999876643211111111111 111134678899999999999999999999996 5789999999999999
Q ss_pred eeecCCCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCC
Q 048725 319 VASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQP 398 (661)
Q Consensus 319 V~tt~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~ 398 (661)
|++|++|||+||++||+++|.+|..++..+++++++|||||++|+++++..++.+..|.+..++||||+|+.+++++++.
T Consensus 262 V~tt~~~kg~~p~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~l~~~~t~~~~~~~~~~~~i~Id~d~~~i~~~~~~ 341 (612)
T PRK07789 262 VVTTLMARGAFPDSHPQHLGMPGMHGTVAAVAALQRSDLLIALGARFDDRVTGKLDSFAPDAKVIHADIDPAEIGKNRHA 341 (612)
T ss_pred EEEcccccccCCCCChhhccCCcccCcHHHHHHHHhCCEEEEECCCCCccccCChhhcCCCCcEEEEECCHHHhCCCCCC
Confidence 99999999999999999999999999998999999999999999999988777666677778899999999999999999
Q ss_pred cceEeccHHHHHHHHHHHhcCCCCCC-CCCcHHHHHHHHHHHhhCCCCcC-CCCCCCChHHHHHHHhhhcCCCcEEEEcC
Q 048725 399 HVSVCADLKLALKGINRILGGKDAEG-RFDFSAWREELDEQKVKYPLSFK-TFEESIPPQYAIQVLDELTNGEAIISTGV 476 (661)
Q Consensus 399 ~~~i~~D~~~~L~~L~~~l~~~~~~~-~~~~~~w~~~l~~~~~~~~~~~~-~~~~~i~~~~~~~~l~~~l~~d~iv~~d~ 476 (661)
++.|.+|++.+|++|++.+....... ......|.+.+.+.+......+. .....+.+..+++.|++.++++.+++.|+
T Consensus 342 ~~~i~gD~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ivv~d~ 421 (612)
T PRK07789 342 DVPIVGDVKEVIAELIAALRAEHAAGGKPDLTAWWAYLDGWRETYPLGYDEPSDGSLAPQYVIERLGEIAGPDAIYVAGV 421 (612)
T ss_pred CeEEecCHHHHHHHHHHhhhhcccccccccHHHHHHHHHHHHHhCccccccccCCCcCHHHHHHHHHhhCCCCeEEEECC
Confidence 99999999999999998875422111 12345787777665443322111 12345899999999999999999999999
Q ss_pred ChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeC
Q 048725 477 GQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNN 556 (661)
Q Consensus 477 G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN 556 (661)
|++..|..+++++..|++|++++++|+|||++|+|||+++++|+++||+++|||||+|++|||+|++++++|+++||+||
T Consensus 422 G~~~~~~~~~~~~~~p~~~~~~~~~G~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~lpv~ivV~NN 501 (612)
T PRK07789 422 GQHQMWAAQFIDYEKPRTWLNSGGLGTMGYAVPAAMGAKVGRPDKEVWAIDGDGCFQMTNQELATCAIEGIPIKVALINN 501 (612)
T ss_pred cHHHHHHHHhcccCCCCeEEcCCCcccccchhhhHHhhhccCCCCcEEEEEcchhhhccHHHHHHHHHcCCCeEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhC-CCcEEEEEEeCCC
Q 048725 557 QHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDT-PGPYLLDVIFPHQ 635 (661)
Q Consensus 557 ~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~-~gp~lIeV~~~~~ 635 (661)
++||++++.|...|..+.....+... ....+||.++|++||+++.+|++.+||+++|+++++. ++|.||||+++++
T Consensus 502 ~~~g~i~~~q~~~~~~~~~~~~~~~~---~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~a~~~~~~p~lIev~i~~~ 578 (612)
T PRK07789 502 GNLGMVRQWQTLFYEERYSNTDLHTH---SHRIPDFVKLAEAYGCVGLRCEREEDVDAVIEKARAINDRPVVIDFVVGKD 578 (612)
T ss_pred CchHHHHHHHHHhhCCCcceeecCcC---CCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhcCCCcEEEEEEECCc
Confidence 99999988886655433222111110 0112799999999999999999999999999999985 8999999999987
Q ss_pred CCcCCcCCCCC
Q 048725 636 EHVLPMIPSGG 646 (661)
Q Consensus 636 ~~~~p~~~~~~ 646 (661)
+...|+.+.+.
T Consensus 579 ~~~~~~~~~~~ 589 (612)
T PRK07789 579 AMVWPMVAAGT 589 (612)
T ss_pred cccCCccCCCC
Confidence 76666665543
No 12
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=2.1e-100 Score=867.22 Aligned_cols=546 Identities=44% Similarity=0.766 Sum_probs=478.0
Q ss_pred CCCCCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhh
Q 048725 84 PDQPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGA 163 (661)
Q Consensus 84 ~~~~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~ 163 (661)
++..++++|+|++.|+++||++|||+||+++++|+++|.+.++|++|.||||++|+||||||+|+|||++||++|+|||+
T Consensus 6 ~~~~~~~~~~i~~~L~~~Gv~~vFgipG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~ 85 (566)
T PRK07282 6 LESPKSGSDLVLETLRDLGVDTIFGYPGGAVLPLYDAIYNFEGIRHILARHEQGALHEAEGYAKSTGKLGVAVVTSGPGA 85 (566)
T ss_pred ccccCcHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHhhcCCceEEEecCHHHHHHHHHHHHHHhCCCeEEEECCCccH
Confidence 34577999999999999999999999999999999999876679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEE
Q 048725 164 TNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLI 243 (661)
Q Consensus 164 ~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I 243 (661)
+|+++||++||.+++|||+|+|+.++...+++.+|++|+.++++++|||++++.+++++++++++|++.|+++|+|||||
T Consensus 86 ~n~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l 165 (566)
T PRK07282 86 TNAITGIADAMSDSVPLLVFTGQVARAGIGKDAFQEADIVGITMPITKYNYQIRETADIPRIITEAVHIATTGRPGPVVI 165 (566)
T ss_pred HHHHHHHHHHhhcCCCEEEEecccccccCCCCCccccChhchhcCCCceeEEcCCHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 99999999999999999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred EeccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeee
Q 048725 244 DVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVAS 321 (661)
Q Consensus 244 ~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~t 321 (661)
+||.|++.+++..........+.+ .....+++..+++++++|.+|+||+|++|+|+. ++.+++.+|||++|+||++
T Consensus 166 ~iP~Dv~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~l~~pv~t 243 (566)
T PRK07282 166 DLPKDVSALETDFIYDPEVNLPSY--QPTLEPNDMQIKKILKQLSKAKKPVILAGGGINYAEAATELNAFAERYQIPVVT 243 (566)
T ss_pred eCChhhhhhhhcccccccccccCC--CCCCCCCHHHHHHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHhCCCEEe
Confidence 999999977653111111111111 111134677899999999999999999999996 5789999999999999999
Q ss_pred cCCCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcce
Q 048725 322 TLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVS 401 (661)
Q Consensus 322 t~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~ 401 (661)
|++|||+||++||+++|..|..++..+++++++||+||+||++++++.++.+..|.++.++||||+|+.++++++++++.
T Consensus 244 t~~gkg~ip~~hpl~~G~~G~~~~~~~~~~~~~aD~vl~lG~~l~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~ 323 (566)
T PRK07282 244 TLLGQGTIATSHPLFLGMGGMHGSYAANIAMTEADFMINIGSRFDDRLTGNPKTFAKNAKVAHIDIDPAEIGKIIKTDIP 323 (566)
T ss_pred ccccCCCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEECCCCCccccCChhhcCCCCeEEEEECCHHHhCCCCCCCeE
Confidence 99999999999999999999888889999999999999999999988877666666778999999999999999999999
Q ss_pred EeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEEEEcCChhHH
Q 048725 402 VCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQM 481 (661)
Q Consensus 402 i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~ 481 (661)
+.+|++.+|++|++.+... .....|.+++.+.+.... ........+++.++++.|++.++++++++.|+|++..
T Consensus 324 i~~D~~~~L~~L~~~l~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~l~~~~~~~~ivv~d~G~~~~ 397 (566)
T PRK07282 324 VVGDAKKALQMLLAEPTVH-----NNTEKWIEKVTKDKNRVR-SYDKKERVVQPQAVIERIGELTNGDAIVVTDVGQHQM 397 (566)
T ss_pred EecCHHHHHHHHHHhhccc-----CChHHHHHHHHHHHHhch-hccCcCCCcCHHHHHHHHHhhcCCCeEEEECCcHHHH
Confidence 9999999999999877532 123568776655443322 1111234689999999999999999999999999999
Q ss_pred HHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchh
Q 048725 482 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGM 561 (661)
Q Consensus 482 ~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~ 561 (661)
|..++++..+|++|++++++|+|||++|+|||+++|+|+++||+++|||||+|++|||+|+++|++|+++||+||++|++
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~lA~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~i~~vV~NN~~y~~ 477 (566)
T PRK07282 398 WAAQYYPYQNERQLVTSGGLGTMGFGIPAAIGAKIANPDKEVILFVGDGGFQMTNQELAILNIYKVPIKVVMLNNHSLGM 477 (566)
T ss_pred HHHHhcccCCCCcEecCCccccccchhhHhheeheecCCCcEEEEEcchhhhccHHHHHHHHHhCCCeEEEEEeCCCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCCCcCCc
Q 048725 562 VMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPM 641 (661)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~~~~p~ 641 (661)
+++.|+.+|+.......+. ..+||+++|++||+++.+|++.+||+++|+ ++..++|+||||++++.+...|+
T Consensus 478 i~~~q~~~~~~~~~~~~~~-------~~~d~~~lA~a~G~~~~~v~~~~el~~al~-~~~~~~p~lIeV~v~~~~~~~~~ 549 (566)
T PRK07282 478 VRQWQESFYEGRTSESVFD-------TLPDFQLMAQAYGIKHYKFDNPETLAQDLE-VITEDVPMLIEVDISRKEHVLPM 549 (566)
T ss_pred HHHHHHHHhCCCcccccCC-------CCCCHHHHHHHCCCEEEEECCHHHHHHHHH-HhcCCCCEEEEEEeCCccccCCc
Confidence 9988876664321111111 127999999999999999999999999997 46779999999999988766666
Q ss_pred CCCC
Q 048725 642 IPSG 645 (661)
Q Consensus 642 ~~~~ 645 (661)
.+.+
T Consensus 550 ~~~~ 553 (566)
T PRK07282 550 VPAG 553 (566)
T ss_pred cCCC
Confidence 6544
No 13
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=100.00 E-value=3.6e-100 Score=864.50 Aligned_cols=536 Identities=49% Similarity=0.813 Sum_probs=476.7
Q ss_pred CcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 048725 88 RKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLV 167 (661)
Q Consensus 88 ~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l 167 (661)
|+++|+|++.|+++||++|||+||+++++|+++|.+. +|++|.|+||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~-~i~~v~~~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~ 79 (548)
T PRK08978 1 MNGAQWVVHALRAQGVDTVFGYPGGAIMPVYDALYDG-GVEHLLCRHEQGAAMAAIGYARATGKVGVCIATSGPGATNLI 79 (548)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhc-CCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHH
Confidence 6899999999999999999999999999999999764 699999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 048725 168 SGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPK 247 (661)
Q Consensus 168 ~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~ 247 (661)
+|+++|+.+++|||+|+|++++...+++.+|++||.++++++|||++++.+++++++++++||+.|.++++|||||+||.
T Consensus 80 ~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (548)
T PRK08978 80 TGLADALLDSVPVVAITGQVSSPLIGTDAFQEIDVLGLSLACTKHSFLVQSLEELPEIMAEAFEIASSGRPGPVLVDIPK 159 (548)
T ss_pred HHHHHHhhcCCCEEEEecCCCccccCCCCCcccchhccccCceeeEEEECCHHHHHHHHHHHHHHHhcCCCCcEEEecCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeecCCC
Q 048725 248 DIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTLMG 325 (661)
Q Consensus 248 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt~~g 325 (661)
|++.++.... .+ ... ......++++.+++++++|.+||||+|++|.|+. ++.+++.+|||++|+||++|++|
T Consensus 160 dv~~~~~~~~--~~--~~~--~~~~~~~~~~~l~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~g 233 (548)
T PRK08978 160 DIQLAEGELE--PH--LTT--VENEPAFPAAELEQARALLAQAKKPVLYVGGGVGMAGAVPALREFLAATGMPAVATLKG 233 (548)
T ss_pred hhhhcccccc--cc--ccc--cCCCCCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHHCCCEEEcccc
Confidence 9987654211 11 111 1112235678899999999999999999999986 56899999999999999999999
Q ss_pred CCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcceEecc
Q 048725 326 LGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCAD 405 (661)
Q Consensus 326 kg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D 405 (661)
||+||++||+++|.+|..++..+++++++||+||++|+++++..++++..|.++.++||||.|+.++++++..++.+.+|
T Consensus 234 kg~~~~~hp~~~G~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d 313 (548)
T PRK08978 234 LGAVEADHPYYLGMLGMHGTKAANLAVQECDLLIAVGARFDDRVTGKLNTFAPHAKVIHLDIDPAEINKLRQAHVALQGD 313 (548)
T ss_pred CCCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEEcCCCCccccCCccccCCCCeEEEEECCHHHhCCCCCCCeEEecC
Confidence 99999999999999998888999999999999999999999887776666777789999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEEEEcCChhHHHHHh
Q 048725 406 LKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQ 485 (661)
Q Consensus 406 ~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~~~~~ 485 (661)
++.+|++|.+.+. ...|.+++.+.+......+......+++..+++.|++.++++.+++.|+|++..|..+
T Consensus 314 ~~~~l~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iiv~d~g~~~~~~~~ 384 (548)
T PRK08978 314 LNALLPALQQPLN---------IDAWRQHCAQLRAEHAWRYDHPGEAIYAPALLKQLSDRKPADTVVTTDVGQHQMWVAQ 384 (548)
T ss_pred HHHHHHHHHHhcc---------chHHHHHHHHHHHhCchhccCCCCCcCHHHHHHHHHHhCCCCcEEEecCcHHHHHHHH
Confidence 9999999987542 1357777666554432222222346889999999999999999999999999999999
Q ss_pred hccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHH
Q 048725 486 FYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQW 565 (661)
Q Consensus 486 ~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~ 565 (661)
+++..+|++|++++++|+|||++|+|||+++++|+++||+++|||||+|++|||+|++++++|+++||+||++|+++++.
T Consensus 385 ~~~~~~~~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~~~l~v~ivV~NN~~~~~~~~~ 464 (548)
T PRK08978 385 HMRFTRPENFITSSGLGTMGFGLPAAIGAQVARPDDTVICVSGDGSFMMNVQELGTIKRKQLPVKIVLLDNQRLGMVRQW 464 (548)
T ss_pred hcccCCCCeEEeCCchhhhhchHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEEEEeCCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCCCcCCcCCCC
Q 048725 566 EDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSG 645 (661)
Q Consensus 566 ~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~~~~p~~~~~ 645 (661)
|+..|..+.....+. ..+||.++|++||+++.+|++.+||+++|+++++.++|.||||++++++...|.++.+
T Consensus 465 ~~~~~~~~~~~~~~~-------~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIeV~id~~~~~~~~~~~~ 537 (548)
T PRK08978 465 QQLFFDERYSETDLS-------DNPDFVMLASAFGIPGQTITRKDQVEAALDTLLNSEGPYLLHVSIDELENVWPLVPPG 537 (548)
T ss_pred HHHHhCCcceecCCC-------CCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEecCcccccccCCCC
Confidence 876554321111110 1279999999999999999999999999999999999999999999988777777655
Q ss_pred C
Q 048725 646 G 646 (661)
Q Consensus 646 ~ 646 (661)
.
T Consensus 538 ~ 538 (548)
T PRK08978 538 A 538 (548)
T ss_pred C
Confidence 3
No 14
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=5.2e-100 Score=864.72 Aligned_cols=550 Identities=47% Similarity=0.790 Sum_probs=482.0
Q ss_pred CcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 048725 88 RKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLV 167 (661)
Q Consensus 88 ~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l 167 (661)
++|+++|++.|+++||++|||+||+++++|+++|.+.++|++|.||||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 3 ~~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~~l~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~ 82 (563)
T PRK08527 3 LSGSQMVCEALKEEGVKVVFGYPGGAILNIYDEIYKQNYFKHILTRHEQAAVHAADGYARASGKVGVAIVTSGPGFTNAV 82 (563)
T ss_pred CcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHHHH
Confidence 68999999999999999999999999999999998766799999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 048725 168 SGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPK 247 (661)
Q Consensus 168 ~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~ 247 (661)
+|+++||.+++|||+|+|+.++...+++.+|++||.++++++|||+.++.+++++++.+++|++.|+++++|||||+||.
T Consensus 83 ~gla~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~~tk~s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~ 162 (563)
T PRK08527 83 TGLATAYMDSIPLVLISGQVPNSLIGTDAFQEIDAVGISRPCVKHNYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPK 162 (563)
T ss_pred HHHHHHhhcCCCEEEEecCCCccccCCCCCcccchhhhhhcccceEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 99999999999999999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeecCCC
Q 048725 248 DIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTLMG 325 (661)
Q Consensus 248 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt~~g 325 (661)
|++.+++....+.......+ .....++++.+++++++|.+||||+|++|+|+. ++.++|++|+|++++||++|++|
T Consensus 163 Dv~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~L~~A~rPviv~G~g~~~~~a~~~l~~lae~~~~pV~tt~~~ 240 (563)
T PRK08527 163 DVTATLGEFEYPKEISLKTY--KPTYKGNSRQIKKAAEAIKEAKKPLFYLGGGAILSNASEEIRELVKKTGIPAVETLMA 240 (563)
T ss_pred hHhhhhhccccccccccccC--CCCCCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHHCCCEEEcccc
Confidence 99876542111111111101 111124678899999999999999999999996 57899999999999999999999
Q ss_pred CCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcceEecc
Q 048725 326 LGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCAD 405 (661)
Q Consensus 326 kg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D 405 (661)
||+||++||+++|++|..|+...++++++||+||+||++++++.++.+..+.++.++||||+|+.+++++++.++.+.+|
T Consensus 241 kg~~~~~hpl~~G~~g~~~~~~~~~~l~~aD~vl~lG~~l~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D 320 (563)
T PRK08527 241 RGVLRSDDPLLLGMLGMHGSYAANMAMSECDLLISLGARFDDRVTGKLSEFAKHAKIIHVDIDPSSISKIVNADYPIVGD 320 (563)
T ss_pred CCCCCCCChhhcCCCcccCCHHHHHHHHhCCEEEEeCCCCCccccCChhhcCCCCeEEEEECCHHHhCCCCCCCeEEecC
Confidence 99999999999999999999999999999999999999999888877766777789999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEEEEcCChhHHHHHh
Q 048725 406 LKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQ 485 (661)
Q Consensus 406 ~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~~~~~ 485 (661)
++.+|++|++.+.... ......|.+.+.+.+...+..+....+++++.++++.|++.+++|.|++.|+|++..|..+
T Consensus 321 ~~~~l~~L~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~g~~~~~~~~ 397 (563)
T PRK08527 321 LKNVLKEMLEELKEEN---PTTYKEWREILKRYNELHPLSYEDSDEVLKPQWVIERVGELLGDDAIISTDVGQHQMWVAQ 397 (563)
T ss_pred HHHHHHHHHHhhhhcc---ccchHHHHHHHHHHHHhCcccccCCCCCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHH
Confidence 9999999998775421 1123568777765544333222222346899999999999999999999999999999999
Q ss_pred hccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHH
Q 048725 486 FYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQW 565 (661)
Q Consensus 486 ~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~ 565 (661)
+++...|++|++++++|+|||++|+|||++++.|+++||+++|||||+|++|||+|++++++|+++||+||++|+++++.
T Consensus 398 ~~~~~~~~~~~~~~~~g~mG~~l~~aiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~~~~lpvi~vV~NN~~~~~i~~~ 477 (563)
T PRK08527 398 FYPFNYPRQLATSGGLGTMGYGLPAALGAKLAVPDKVVINFTGDGSILMNIQELMTAVEYKIPVINIILNNNFLGMVRQW 477 (563)
T ss_pred hcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEecCchhcccHHHHHHHHHhCCCeEEEEEECCcchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCCCcCCcCCCC
Q 048725 566 EDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSG 645 (661)
Q Consensus 566 ~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~~~~p~~~~~ 645 (661)
|...|+.......+. ..+||.++|++||+++++|++.+||+++|+++++.+||.||||++++.++..|..+.+
T Consensus 478 ~~~~~~~~~~~~~~~-------~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~p~lieV~v~~~~~~~~~~~~~ 550 (563)
T PRK08527 478 QTFFYEERYSETDLS-------TQPDFVKLAESFGGIGFRVTTKEEFDKALKEALESDKVALIDVKIDRFENVLPMVPAG 550 (563)
T ss_pred HHhhcCCceeeccCC-------CCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEECCcccccccCCCC
Confidence 765544321111111 1279999999999999999999999999999999999999999999988777777665
Q ss_pred Cccc
Q 048725 646 GAFK 649 (661)
Q Consensus 646 ~~~~ 649 (661)
..+.
T Consensus 551 ~~~~ 554 (563)
T PRK08527 551 GALY 554 (563)
T ss_pred CCHH
Confidence 4443
No 15
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=7.2e-100 Score=866.23 Aligned_cols=562 Identities=37% Similarity=0.648 Sum_probs=484.4
Q ss_pred CcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHc---CCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhH
Q 048725 88 RKGADILVEALERQGVTDVFAYPGGASMEIHQALTR---SNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGAT 164 (661)
Q Consensus 88 ~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~---~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~ 164 (661)
++|+|+|++.|+++||+||||+||+.+++|+++|.+ +++|++|.||||++|+||||||+|+||+++||++|+|||++
T Consensus 2 ~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~ 81 (572)
T PRK06456 2 PTGARILVDSLKREGVKVIFGIPGLSNMQIYDAFVEDLANGELRHVLMRHEQAAAHAADGYARASGVPGVCTATSGPGTT 81 (572)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhhccCCCCeEEEeCcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHH
Confidence 379999999999999999999999999999999974 24699999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEE
Q 048725 165 NLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLID 244 (661)
Q Consensus 165 N~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~ 244 (661)
|+++||++|+.+++|||+|+|+.++...+++.+|++|+.++++++|||++++.+++++++.+++||+.|+++++|||||+
T Consensus 82 N~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~i~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~ 161 (572)
T PRK06456 82 NLVTGLITAYWDSSPVIAITGQVPRSVMGKMAFQEADAMGVFENVTKYVIGIKRIDEIPQWIKNAFYIATTGRPGPVVID 161 (572)
T ss_pred HHHHHHHHHHhhCCCEEEEecCCCccccCCCCccccchhhhhhccceeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccchhhhccCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeee
Q 048725 245 VPKDIQQQLAVPN-WNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVAS 321 (661)
Q Consensus 245 iP~dv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~t 321 (661)
||.|++.+++... .......+.+ ...+..++++.+++++++|.+|+||+|++|+|+. ++.+++++|+|++|+||++
T Consensus 162 iP~Dv~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~t 240 (572)
T PRK06456 162 IPRDIFYEKMEEIKWPEKPLVKGY-RDFPTRIDRLALKKAAEILINAERPIILVGTGVVWSNATPEVLELAELLHIPIVS 240 (572)
T ss_pred cChhHhhcccccccccccccccCC-CCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCcccchHHHHHHHHHHhCCCEEE
Confidence 9999987664211 1000000011 1111234678899999999999999999999996 5789999999999999999
Q ss_pred cCCCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCC-CCeEEEEcCCchhhccCCCCcc
Q 048725 322 TLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFAS-RAKIVHIDIDSAEIGKNKQPHV 400 (661)
Q Consensus 322 t~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~-~~~vi~Id~d~~~i~~~~~~~~ 400 (661)
|++|||+||++||+++|++|..|+..+++++++||+||+||++++++.++.+..+.+ ..++||||+|+..+++++.+++
T Consensus 241 t~~gkg~i~~~hp~~~G~~g~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~ 320 (572)
T PRK06456 241 TFPGKTAIPHDHPLYFGPMGYYGRAEASMAALESDAMLVVGARFSDRTFTSYDEMVETRKKFIMVNIDPTDGEKAIKVDV 320 (572)
T ss_pred cCccCcCCCCCCccccccCCCCCCHHHHHHHHhCCEEEEECCCCchhhccccccccCCCCeEEEEeCChHHhCCccCCCe
Confidence 999999999999999999999998888889999999999999999887766655543 6789999999999999999999
Q ss_pred eEeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCc-CCCCCCCChHHHHHHHhhhcCCCcEEEEcCChh
Q 048725 401 SVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSF-KTFEESIPPQYAIQVLDELTNGEAIISTGVGQH 479 (661)
Q Consensus 401 ~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~-~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~ 479 (661)
.+.+|++.+|+.|.+.+..... ......|.+++.+.++...... ......+++..+++.|++.++++.+++.|+|++
T Consensus 321 ~i~~D~~~~l~~L~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ii~~d~g~~ 398 (572)
T PRK06456 321 GIYGNAKIILRELIKAITELGQ--KRDRSAWLKRVKEYKEYYSQFYYTEENGKLKPWKIMKTIRQALPRDAIVTTGVGQH 398 (572)
T ss_pred EEecCHHHHHHHHHHHhhhccc--ccccHHHHHHHHHHHHhchhhcccccCCCcCHHHHHHHHHHhCCCCEEEEECCcHH
Confidence 9999999999999987753211 1123568776665544322111 112235899999999999999999999999999
Q ss_pred HHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcc
Q 048725 480 QMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHL 559 (661)
Q Consensus 480 ~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~ 559 (661)
..|..++++...|.++++++++|+|||++|+|||+++++|+++||+++|||||+|++|||+|++++++|+++||+||++|
T Consensus 399 ~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~~~~l~i~ivV~NN~~y 478 (572)
T PRK06456 399 QMWAEVFWEVLEPRTFLTSSGMGTMGFGLPAAMGAKLARPDKVVVDLDGDGSFLMTGTNLATAVDEHIPVISVIFDNRTL 478 (572)
T ss_pred HHHHHHhcCcCCCCcEEcCCCcccccchhHHHHHHHHhCCCCeEEEEEccchHhcchHHHHHHHHhCCCeEEEEEECCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCCCcC
Q 048725 560 GMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVL 639 (661)
Q Consensus 560 g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~~~~ 639 (661)
++++++|+..|+.......+. ..+||+++|++||+++.+|++.+||+++|+++++.+||+||||++++++...
T Consensus 479 g~i~~~q~~~~~~~~~~~~~~-------~~~d~~~~A~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIev~v~~~~~~~ 551 (572)
T PRK06456 479 GLVRQVQDLFFGKRIVGVDYG-------PSPDFVKLAEAFGALGFNVTTYEDIEKSLKSAIKEDIPAVIRVPVDKEELAL 551 (572)
T ss_pred HHHHHHHHHhhCCCcccccCC-------CCCCHHHHHHHCCCeeEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCcccccC
Confidence 999988877664321111111 1279999999999999999999999999999999999999999999888777
Q ss_pred CcCCCCCccccccccCCCCCC
Q 048725 640 PMIPSGGAFKDVITEGDGRTQ 660 (661)
Q Consensus 640 p~~~~~~~~~~~~~~~~~~~~ 660 (661)
|+.+.+..++++..+ +-|++
T Consensus 552 ~~~~~~~~~~~~~~~-~~~~~ 571 (572)
T PRK06456 552 PTLPPGGRLKQVILR-DPRKS 571 (572)
T ss_pred CCCCCCCchhhhhcc-CCcCC
Confidence 777766666665555 44443
No 16
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=100.00 E-value=1.3e-99 Score=861.19 Aligned_cols=543 Identities=49% Similarity=0.855 Sum_probs=476.1
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 048725 86 QPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATN 165 (661)
Q Consensus 86 ~~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N 165 (661)
.+++++|+|++.|+++||++|||+||+++++|+++|.+ ++|++|.|+||++|+||||||+|+||||+||++|+|||++|
T Consensus 6 ~~~~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~-~~i~~v~~~hE~~A~~~Adgyar~tg~~~v~~~t~GpG~~n 84 (561)
T PRK06048 6 EKMTGARAIIKCLEKEGVEVIFGYPGGAIIPVYDELYD-SDLRHILVRHEQAAAHAADGYARATGKVGVCVATSGPGATN 84 (561)
T ss_pred ccccHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhh-CCCeEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHH
Confidence 45799999999999999999999999999999999976 46999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEe
Q 048725 166 LVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDV 245 (661)
Q Consensus 166 ~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~i 245 (661)
+++||++||.+++|||+|+|+.+....+.+.+|++||.++++++|||++++.+++++++++++|++.|.++++|||||+|
T Consensus 85 ~~~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~i 164 (561)
T PRK06048 85 LVTGIATAYMDSVPIVALTGQVPRSMIGNDAFQEADITGITMPITKHNYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDL 164 (561)
T ss_pred HHHHHHHHhhcCCCEEEEeccCCccccCCCCccccchhhhccCcceEEEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEec
Confidence 99999999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeecC
Q 048725 246 PKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTL 323 (661)
Q Consensus 246 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt~ 323 (661)
|.|++.+++............+ .....++.+.+++++++|.+||||+|++|+|+. ++.+++++|||++|+||+||+
T Consensus 165 P~dv~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~a~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~tt~ 242 (561)
T PRK06048 165 PKDVTTAEIDFDYPDKVELRGY--KPTYKGNPQQIKRAAELIMKAERPIIYAGGGVISSNASEELVELAETIPAPVTTTL 242 (561)
T ss_pred ChhhhhcccccccCcccccccC--CCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcccccHHHHHHHHHHHhCCCEEEcc
Confidence 9999876542211110111111 111134678899999999999999999999996 578999999999999999999
Q ss_pred CCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcceEe
Q 048725 324 MGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVC 403 (661)
Q Consensus 324 ~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~ 403 (661)
+|||+||++||+++|++|..|...+++++++||+||+||+++++..++.+..+.+..++||||.|+.++++++++++.++
T Consensus 243 ~~kg~~~~~hpl~~G~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~ 322 (561)
T PRK06048 243 MGIGAIPTEHPLSLGMLGMHGTKYANYAIQESDLIIAVGARFDDRVTGKLASFAPNAKIIHIDIDPAEISKNVKVDVPIV 322 (561)
T ss_pred ccCccCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEECCCCCccccCChhhcCCCCeEEEEECCHHHhCCCCCCCeEEE
Confidence 99999999999999999999999999999999999999999998888766666677899999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEEEEcCChhHHHH
Q 048725 404 ADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWA 483 (661)
Q Consensus 404 ~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~~~ 483 (661)
+|++.+|++|++.+... ....|.+.+.+.....+.........+++..+++.|++.++ +.+++.|+|++..|.
T Consensus 323 ~D~~~~l~~L~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~p-~~iiv~d~g~~~~~~ 395 (561)
T PRK06048 323 GDAKQVLKSLIKYVQYC------DRKEWLDKINQWKKEYPLKYKEREDVIKPQYVIEQIYELCP-DAIIVTEVGQHQMWA 395 (561)
T ss_pred eCHHHHHHHHHHhcccc------CcHHHHHHHHHHHHhChhhccCCCCCcCHHHHHHHHHhhCC-CcEEEEcCcHHHHHH
Confidence 99999999999877532 23457666655544333222222346899999999999988 789999999999999
Q ss_pred HhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchhHH
Q 048725 484 AQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVM 563 (661)
Q Consensus 484 ~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~ 563 (661)
.++++..+|++|++++++|+|||++|+|||+++++|+++||+++|||||+|++|||+|++++|+|+++||+||++|++++
T Consensus 396 ~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~i~~vV~NN~~y~~i~ 475 (561)
T PRK06048 396 AQYFKYKYPRTFITSGGLGTMGYGFPAAIGAKVGKPDKTVIDIAGDGSFQMNSQELATAVQNDIPVIVAILNNGYLGMVR 475 (561)
T ss_pred HHhcccCCCCeEEeCCCccccccHHHHHHHHHHhCCCCcEEEEEeCchhhccHHHHHHHHHcCCCeEEEEEECCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCCCcCCcCC
Q 048725 564 QWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIP 643 (661)
Q Consensus 564 ~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~~~~p~~~ 643 (661)
+.|...|........+ ...+||.++|++||+++.+|++.+||+++|+++++.+||+||||++++++...|+.+
T Consensus 476 ~~~~~~~~~~~~~~~~-------~~~~d~~~lA~a~G~~~~~v~t~~el~~al~~a~~~~~p~liev~~~~~~~~~~~~~ 548 (561)
T PRK06048 476 QWQELFYDKRYSHTCI-------KGSVDFVKLAEAYGALGLRVEKPSEVRPAIEEAVASDRPVVIDFIVECEENVSPMVP 548 (561)
T ss_pred HHHHHHcCCcccccCC-------CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEecCccccCCcCC
Confidence 8876655432111111 013799999999999999999999999999999999999999999998887666666
Q ss_pred CC
Q 048725 644 SG 645 (661)
Q Consensus 644 ~~ 645 (661)
.+
T Consensus 549 ~~ 550 (561)
T PRK06048 549 AG 550 (561)
T ss_pred CC
Confidence 43
No 17
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=1.1e-99 Score=860.65 Aligned_cols=542 Identities=49% Similarity=0.846 Sum_probs=476.8
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNL 166 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~ 166 (661)
.++++|+|++.|+++||+||||+||+.+++|+++|.+. +|++|.||||++|+||||||||+|||||||++|+|||++|+
T Consensus 14 ~~~~a~~l~~~L~~~GV~~vFGipG~~~~~l~dal~~~-~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~ 92 (570)
T PRK06725 14 EVTGAGHVIQCLKKLGVTTVFGYPGGAILPVYDALYES-GLKHILTRHEQAAIHAAEGYARASGKVGVVFATSGPGATNL 92 (570)
T ss_pred cccHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHhc-CCcEEEecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHH
Confidence 47899999999999999999999999999999999864 69999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEec
Q 048725 167 VSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVP 246 (661)
Q Consensus 167 l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP 246 (661)
++||++||.+++|||+|+|+.++...+++.+|++|+.++++++|||++++.+++++++++++||+.|+++|+|||||+||
T Consensus 93 ~~gla~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP 172 (570)
T PRK06725 93 VTGLADAYMDSIPLVVITGQVATPLIGKDGFQEADVVGITVPVTKHNYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIP 172 (570)
T ss_pred HHHHHHHhhcCcCEEEEecCCCcccccCCCCcccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEccc
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeecCC
Q 048725 247 KDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTLM 324 (661)
Q Consensus 247 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt~~ 324 (661)
.|++.+++...+........+ .....+++..+++++++|.+||||+|++|+|+. ++.++|.+|||++|+||+||++
T Consensus 173 ~Dv~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~~A~rPvIl~G~g~~~~~a~~~l~~lae~~~~PV~tt~~ 250 (570)
T PRK06725 173 KDVQNEKVTSFYNEVVEIPGY--KPEPRPDSMKLREVAKAISKAKRPLLYIGGGVIHSGGSEELIEFARENRIPVVSTLM 250 (570)
T ss_pred cchhhcccccccCcccccccC--CCCCCCCHHHHHHHHHHHHcCCCcEEEECCCccccchHHHHHHHHHHhCCCEEECCc
Confidence 999876653211111111111 111235778899999999999999999999986 5789999999999999999999
Q ss_pred CCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcceEec
Q 048725 325 GLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCA 404 (661)
Q Consensus 325 gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~ 404 (661)
|||.||++||+++|.+|..++..+++++++|||||+||++++++.++.+..+.++.++||||.|+..++++++.++.+.+
T Consensus 251 ~kg~~p~~hp~~~G~~G~~~~~~~~~~l~~aDlil~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~g 330 (570)
T PRK06725 251 GLGAYPPGDPLFLGMLGMHGTYAANMAVTECDLLLALGVRFDDRVTGKLELFSPHSKKVHIDIDPSEFHKNVAVEYPVVG 330 (570)
T ss_pred cCcCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEeCCCCCccccCcccccCCCCeEEEEeCCHHHhCCCCCCCeEEec
Confidence 99999999999999999999999999999999999999999988877665566677899999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEEEEcCChhHHHHH
Q 048725 405 DLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAA 484 (661)
Q Consensus 405 D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~~~~ 484 (661)
|++.+|++|++.+... ....|.+++++.+...+........++++..+++.|++.+++|.|++.|+|++..|..
T Consensus 331 D~~~~l~~L~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~d~iiv~d~g~~~~~~~ 404 (570)
T PRK06725 331 DVKKALHMLLHMSIHT------QTDEWLQKVKTWKEEYPLSYKQKESELKPQHVINLVSELTNGEAIVTTEVGQHQMWAA 404 (570)
T ss_pred CHHHHHHHHHHhcccc------CcHHHHHHHHHHHHhChhhhcccCCCcCHHHHHHHHHhhCCCCcEEEeCCcHHHHHHH
Confidence 9999999998876431 1345776665554433211111234589999999999999999999999999999999
Q ss_pred hhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHH
Q 048725 485 QFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQ 564 (661)
Q Consensus 485 ~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~ 564 (661)
++++...|++|++++++|+|||++|+|||+++|+|+++||+++|||||+|+++||+|++++++|+++||+||++|+++++
T Consensus 405 ~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~lA~p~~~vv~i~GDG~f~~~~~el~Ta~~~~lpi~~vV~NN~~~~~~~~ 484 (570)
T PRK06725 405 HFYKAKNPRTFLTSGGLGTMGFGFPAAIGAQLAKEEELVICIAGDASFQMNIQELQTIAENNIPVKVFIINNKFLGMVRQ 484 (570)
T ss_pred HhccccCCCeEEccCCcccccchhhHHHhhHhhcCCCeEEEEEecchhhccHHHHHHHHHhCCCeEEEEEECCccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCCCcCCcCCC
Q 048725 565 WEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPS 644 (661)
Q Consensus 565 ~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~~~~p~~~~ 644 (661)
.|...|+.......+. .+||.++|++||+++++|++.+||+++++++++.+||+||||++++.+...|.++.
T Consensus 485 ~q~~~~~~~~~~~~~~--------~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~~p~liev~id~~~~~~~~~~~ 556 (570)
T PRK06725 485 WQEMFYENRLSESKIG--------SPDFVKVAEAYGVKGLRATNSTEAKQVMLEAFAHEGPVVVDFCVEEGENVFPMVPP 556 (570)
T ss_pred HHHHhcCCccccCcCC--------CCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCCccccCCccCC
Confidence 7766554321111111 27999999999999999999999999999999999999999999988766666654
Q ss_pred C
Q 048725 645 G 645 (661)
Q Consensus 645 ~ 645 (661)
+
T Consensus 557 ~ 557 (570)
T PRK06725 557 N 557 (570)
T ss_pred C
Confidence 4
No 18
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=100.00 E-value=2.5e-99 Score=861.62 Aligned_cols=556 Identities=48% Similarity=0.798 Sum_probs=479.4
Q ss_pred CCCCCCCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcC---CCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEc
Q 048725 82 FAPDQPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRS---NNIRNVLPRHEQGGIFAAEGYARSSGKPGICIAT 158 (661)
Q Consensus 82 ~~~~~~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~---~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~t 158 (661)
..|...++++++|++.|+++||++|||+||+.+++|+++|.+. ++|++|.||||++|+||||||+|+||||+||++|
T Consensus 4 ~~~~~~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~d~l~~~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t 83 (585)
T CHL00099 4 QLTLREKTGAFALIDSLVRHGVKHIFGYPGGAILPIYDELYAWEKKGLIKHILVRHEQGAAHAADGYARSTGKVGVCFAT 83 (585)
T ss_pred ccccccccHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCcCCCceEEEecCHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 4677789999999999999999999999999999999999753 2499999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCC
Q 048725 159 SGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRP 238 (661)
Q Consensus 159 sGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~ 238 (661)
+|||++|+++||++||.+++|||+|+|+.++...+++.+|++|+..+++++|||++++.+++++++.+++||+.|+++|+
T Consensus 84 ~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~~~~ 163 (585)
T CHL00099 84 SGPGATNLVTGIATAQMDSVPLLVITGQVGRAFIGTDAFQEVDIFGITLPIVKHSYVVRDARDISRIVAEAFYIAKHGRP 163 (585)
T ss_pred CCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccCCCCccccchhhhhcCceeEEEEeCCHHHHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeccchhhhccCCCCCCCCC--CCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHH
Q 048725 239 GPVLIDVPKDIQQQLAVPNWNQPIK--LPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVEL 314 (661)
Q Consensus 239 GPV~I~iP~dv~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~ 314 (661)
|||||+||.|++.+++......+.. .+....+....++++.+++++++|.+||||+|++|+|+. ++.+++++|+|+
T Consensus 164 GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~ 243 (585)
T CHL00099 164 GPVLIDIPKDVGLEKFDYYPPEPGNTIIKILGCRPIYKPTIKRIEQAAKLILQSSQPLLYVGGGAIISDAHQEITELAEL 243 (585)
T ss_pred CeEEEecChhhhhhhcccccccccccccccccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCCchhchHHHHHHHHHH
Confidence 9999999999987665321000000 000000111135678899999999999999999999995 678999999999
Q ss_pred hCCCeeecCCCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhcc
Q 048725 315 TGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGK 394 (661)
Q Consensus 315 lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~ 394 (661)
+|+||+||++|||+||++||+++|.+|..+...+++++++|||||++|++++++.++.+..|.+..++||||+|+.++++
T Consensus 244 lg~PV~tt~~~kg~~~~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~ 323 (585)
T CHL00099 244 YKIPVTTTLMGKGIFDEDHPLCLGMLGMHGTAYANFAVSECDLLIALGARFDDRVTGKLDEFACNAQVIHIDIDPAEIGK 323 (585)
T ss_pred HCCCEEEccccCcCCCCCCCcccCCCCCCCCHHHHHHHHhCCEEEEECCCCcccccCCHhHcCCCCeEEEEECCHHHhCC
Confidence 99999999999999999999999999988998899999999999999999998887766666777899999999999999
Q ss_pred CCCCcceEeccHHHHHHHHHHHhcCCCC-CCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEEE
Q 048725 395 NKQPHVSVCADLKLALKGINRILGGKDA-EGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIIS 473 (661)
Q Consensus 395 ~~~~~~~i~~D~~~~L~~L~~~l~~~~~-~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~ 473 (661)
++++++.+.+|++.+|++|++.+..... ........|.+.+++.++......+....++++.++++.|++.++ |.+++
T Consensus 324 ~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~-d~iv~ 402 (585)
T CHL00099 324 NRIPQVAIVGDVKKVLQELLELLKNSPNLLESEQTQAWRERINRWRKEYPLLIPKPSTSLSPQEVINEISQLAP-DAYFT 402 (585)
T ss_pred CCCCCeEEecCHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHhChhhccccCCCcCHHHHHHHHHhhCC-CeEEE
Confidence 9999999999999999999987764221 001123567776665544332211222346999999999999999 89999
Q ss_pred EcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEE
Q 048725 474 TGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILL 553 (661)
Q Consensus 474 ~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV 553 (661)
.|+|++..|..++++. ++++|+.++++|+|||++|+|||+++++|+++||+|+|||||+|++|||+|++++++|+++||
T Consensus 403 ~d~G~~~~~~~~~~~~-~~~~~~~~~~~g~mG~glpaaiGaala~p~~~vv~i~GDG~f~m~~~eL~Ta~~~~l~~~~vV 481 (585)
T CHL00099 403 TDVGQHQMWAAQFLKC-KPRKWLSSAGLGTMGYGLPAAIGAQIAHPNELVICISGDASFQMNLQELGTIAQYNLPIKIII 481 (585)
T ss_pred ECCcHHHHHHHHhccC-CCCcEEcCccccchhhhHHHHHHHHHhCCCCeEEEEEcchhhhhhHHHHHHHHHhCCCeEEEE
Confidence 9999999999999976 578999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeC
Q 048725 554 LNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFP 633 (661)
Q Consensus 554 ~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~ 633 (661)
+||++|+++++.|+..|+.......+. ...+||.++|++||+++++|++.+||+++|+++++.+||.||||+++
T Consensus 482 ~NN~~y~~i~~~q~~~~~~~~~~~~~~------~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~~p~liev~v~ 555 (585)
T CHL00099 482 INNKWQGMVRQWQQAFYGERYSHSNME------EGAPDFVKLAEAYGIKGLRIKSRKDLKSSLKEALDYDGPVLIDCQVI 555 (585)
T ss_pred EECCcchHHHHHHHHhcCCCcccccCC------CCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEEC
Confidence 999999999888876654322111111 01279999999999999999999999999999999999999999999
Q ss_pred CCCCcCCcCCCC
Q 048725 634 HQEHVLPMIPSG 645 (661)
Q Consensus 634 ~~~~~~p~~~~~ 645 (661)
..+...|..+.+
T Consensus 556 ~~~~~~~~~~~~ 567 (585)
T CHL00099 556 EDENCYPMVAPG 567 (585)
T ss_pred CCcccCCCcCCC
Confidence 877666666544
No 19
>PRK11269 glyoxylate carboligase; Provisional
Probab=100.00 E-value=2.9e-99 Score=862.65 Aligned_cols=547 Identities=31% Similarity=0.525 Sum_probs=470.9
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHh-CCcEEEEEccchhhHH
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS-GKPGICIATSGPGATN 165 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~t-g~~gv~~~tsGpG~~N 165 (661)
+|+++|+|++.|+++||+||||+||+++++|+++|.++++|++|.||||++|+||||||+|+| |+++||++|+|||++|
T Consensus 3 ~~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~N 82 (591)
T PRK11269 3 KMRAVDAAVLVLEKEGVTTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD 82 (591)
T ss_pred cccHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhhcCCCcEEeeCCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHHH
Confidence 589999999999999999999999999999999998766799999999999999999999999 9999999999999999
Q ss_pred HHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEe
Q 048725 166 LVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDV 245 (661)
Q Consensus 166 ~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~i 245 (661)
+++|+++||.+++|||+|+|+++....+++.+|++||.++++++|||++++.+++++++++++||+.|+++|+|||||+|
T Consensus 83 ~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~itk~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~i 162 (591)
T PRK11269 83 MITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIESIAKPVTKWAVTVREPALVPRVFQQAFHLMRSGRPGPVLIDL 162 (591)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCCcccccChhhHhhcceeEEEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeecC
Q 048725 246 PKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTL 323 (661)
Q Consensus 246 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt~ 323 (661)
|.|++.+++..........+ .....++++.+++++++|.+||||+||+|+|+. ++.+++.+|+|++|+||++|+
T Consensus 163 P~Dv~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~g~PV~tt~ 238 (591)
T PRK11269 163 PFDVQVAEIEFDPDTYEPLP----VYKPAATRAQIEKALEMLNAAERPLIVAGGGVINADASDLLVEFAELTGVPVIPTL 238 (591)
T ss_pred Chhhhhcccccccccccccc----cCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCcccCHHHHHHHHHHHhCCCeEecc
Confidence 99998766421110000111 111234778899999999999999999999985 578999999999999999999
Q ss_pred CCCCCCCCCCCCCCcccCCC-CcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcceE
Q 048725 324 MGLGSFPGTDELSLQMLGMH-GTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSV 402 (661)
Q Consensus 324 ~gkg~~p~~hpl~lg~~G~~-g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 402 (661)
+|||+||++||+++|++|.. +...+++++++||+||+||++++++.++.+..+.+..++||||+|+..+++++++++.+
T Consensus 239 ~gkg~~p~~hpl~~G~~g~~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~i~Vd~d~~~~~~~~~~~~~i 318 (591)
T PRK11269 239 MGWGAIPDDHPLMAGMVGLQTSHRYGNATLLASDFVLGIGNRWANRHTGSVEVYTKGRKFVHVDIEPTQIGRVFGPDLGI 318 (591)
T ss_pred cccCcCCCCChhhccCCcCCCCcHHHHHHHHhCCEEEEeCCCCCccccCchhhcCCCCeEEEeeCCHHHhCCCCCCCeEE
Confidence 99999999999999999875 67788889999999999999999988876666667778999999999999999999999
Q ss_pred eccHHHHHHHHHHHhcCCCCC-CCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEEEEcCChhHH
Q 048725 403 CADLKLALKGINRILGGKDAE-GRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQM 481 (661)
Q Consensus 403 ~~D~~~~L~~L~~~l~~~~~~-~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~ 481 (661)
.+|++.+|+.|++.+...... .......|.+++.+.+............++++..+++.|++.++++.+++.|+|++..
T Consensus 319 ~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~d~ivv~d~g~~~~ 398 (591)
T PRK11269 319 VSDAKAALELLVEVAREWKAAGRLPDRSAWVADCQERKRTLLRKTHFDNVPIKPQRVYEEMNKAFGRDTCYVSTIGLSQI 398 (591)
T ss_pred EeCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhchhhccCCCCCcCHHHHHHHHHHhcCCCcEEEECCcHHHH
Confidence 999999999999877532110 0122356877766554433211111233589999999999999999999999999999
Q ss_pred HHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchh
Q 048725 482 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGM 561 (661)
Q Consensus 482 ~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~ 561 (661)
|..++++..+|++|++++++|+|||++|+|||++++.|+++||+++|||||+|++|||+|++++++|+++||+||++||+
T Consensus 399 ~~~~~~~~~~p~~~~~~~~~G~mG~glpaAiGa~la~p~r~Vv~i~GDG~f~m~~~eL~Ta~~~~lpv~~vV~NN~~~g~ 478 (591)
T PRK11269 399 AAAQFLHVYKPRHWINCGQAGPLGWTIPAALGVRAADPDRNVVALSGDYDFQFLIEELAVGAQFNLPYIHVLVNNAYLGL 478 (591)
T ss_pred HHHHhcccCCCCcEEeCCccccccchhhhHHhhhhhCCCCcEEEEEccchhhcCHHHHHHHHHhCCCeEEEEEeCCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccccccCC--CCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh----CCCcEEEEEEeCCC
Q 048725 562 VMQWEDRFYKANRAHTYLGD--PSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD----TPGPYLLDVIFPHQ 635 (661)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~g~--p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~----~~gp~lIeV~~~~~ 635 (661)
+++.|..++........+.. ........+||+++|++||+++.+|++++||+++|+++++ .+||.||||+++++
T Consensus 479 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~~~~gp~lieV~v~~~ 558 (591)
T PRK11269 479 IRQAQRAFDMDYCVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVFKPEDIAPALEQAKALMAEFRVPVVVEVILERV 558 (591)
T ss_pred HHHHHHHhccCccceeeccccccccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhhcccCCCcEEEEEEeccc
Confidence 98887543221110111110 0000112379999999999999999999999999999985 78999999999976
Q ss_pred CC
Q 048725 636 EH 637 (661)
Q Consensus 636 ~~ 637 (661)
+.
T Consensus 559 ~~ 560 (591)
T PRK11269 559 TN 560 (591)
T ss_pred cC
Confidence 63
No 20
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=4.8e-99 Score=858.21 Aligned_cols=546 Identities=50% Similarity=0.847 Sum_probs=479.4
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNL 166 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~ 166 (661)
.++++|+|++.|+++||+||||+||+++++|+++|.+. +|++|.++||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 15 ~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GPG~~N~ 93 (571)
T PRK07710 15 LMTGAQMLIEALEKEGVEVIFGYPGGAVLPLYDALYDC-GIPHILTRHEQGAIHAAEGYARISGKPGVVIATSGPGATNV 93 (571)
T ss_pred cchHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhc-CCcEEEeCCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHH
Confidence 47899999999999999999999999999999999864 69999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEec
Q 048725 167 VSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVP 246 (661)
Q Consensus 167 l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP 246 (661)
++||++||.+++|||+|+|++++...+++.+|++||..+++++|||++++.+++++++.+++|++.|.++|+|||||+||
T Consensus 94 ~~gl~~A~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 173 (571)
T PRK07710 94 VTGLADAMIDSLPLVVFTGQVATSVIGSDAFQEADIMGITMPVTKHNYQVRKASDLPRIIKEAFHIATTGRPGPVLIDIP 173 (571)
T ss_pred HHHHHHHhhcCCCEEEEeccCCccccCCCCccccchhhhhhcccceEEecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeecCC
Q 048725 247 KDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTLM 324 (661)
Q Consensus 247 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt~~ 324 (661)
.|++.+++..........+.+ .....+++..+++++++|.+|+||+|++|.|+. ++.+++++|+|++|+||++|++
T Consensus 174 ~Dv~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~L~~A~rPvIl~G~g~~~~~a~~~l~~lae~~~~pv~tt~~ 251 (571)
T PRK07710 174 KDMVVEEGEFCYDVQMDLPGY--QPNYEPNLLQIRKLVQAVSVAKKPVILAGAGVLHAKASKELTSYAEQQEIPVVHTLL 251 (571)
T ss_pred hhHhhccccccccccccccCC--CCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcCccchHHHHHHHHHHhCCCEEEcCc
Confidence 999876642111111111111 111134677899999999999999999999985 5689999999999999999999
Q ss_pred CCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcceEec
Q 048725 325 GLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCA 404 (661)
Q Consensus 325 gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~ 404 (661)
|||+||++||+++|..|..++..+++++++||+||+||++++++.++.+..|.++.++||||+|+.+++++++.++.+++
T Consensus 252 ~kg~i~~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~ig~~~~~~~~i~~ 331 (571)
T PRK07710 252 GLGGFPADHPLFLGMAGMHGTYTANMALYECDLLINIGARFDDRVTGNLAYFAKEATVAHIDIDPAEIGKNVPTEIPIVA 331 (571)
T ss_pred cCccCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEeCCCCCccccCchhhcCCCCeEEEEECCHHHhcCcCCCCeEEec
Confidence 99999999999999999999999999999999999999999988887766677778999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEEEEcCChhHHHHH
Q 048725 405 DLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAA 484 (661)
Q Consensus 405 D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~~~~ 484 (661)
|++.+|++|++.+... .....|.+++++...+.........+.+++..+++.|++.++++.+++.|+|++..|..
T Consensus 332 D~~~~l~~L~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~ 406 (571)
T PRK07710 332 DAKQALQVLLQQEGKK-----ENHHEWLSLLKNWKEKYPLSYKRNSESIKPQKAIEMLYEITKGEAIVTTDVGQHQMWAA 406 (571)
T ss_pred CHHHHHHHHHHhhhcc-----CCcHHHHHHHHHHHHhChhhhcCCCCCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHH
Confidence 9999999998866421 12356877666555443222112234589999999999999999999999999999999
Q ss_pred hhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHH
Q 048725 485 QFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQ 564 (661)
Q Consensus 485 ~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~ 564 (661)
++++..+|++|++++++|+|||++|+|||++++.|+++||+++|||||+|+++||+|++++++|+++||+||++|+++++
T Consensus 407 ~~~~~~~~~~~~~~~~~g~mG~glpaAiGaala~p~~~vv~i~GDGsf~m~~~eL~ta~r~~lpi~ivV~NN~~~~~i~~ 486 (571)
T PRK07710 407 QYYPFKTPDKWVTSGGLGTMGFGLPAAIGAQLAKPDETVVAIVGDGGFQMTLQELSVIKELSLPVKVVILNNEALGMVRQ 486 (571)
T ss_pred HhcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchHHhhhHHHHHHHHHhCCCeEEEEEECchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCCCcCCcCCC
Q 048725 565 WEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPS 644 (661)
Q Consensus 565 ~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~~~~p~~~~ 644 (661)
.|...|........+ ...+||+++|++||+++.+|++.+||+++++++++.+||.||||++++++...|.++.
T Consensus 487 ~~~~~~~~~~~~~~~-------~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~~p~lieV~vd~~~~~~~~~~~ 559 (571)
T PRK07710 487 WQEEFYNQRYSHSLL-------SCQPDFVKLAEAYGIKGVRIDDELEAKEQLQHAIELQEPVVIDCRVLQSEKVMPMVAP 559 (571)
T ss_pred HHHHHhCCcceeccC-------CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEecCccccccccCC
Confidence 886655432111111 0127999999999999999999999999999999999999999999988877777765
Q ss_pred CCc
Q 048725 645 GGA 647 (661)
Q Consensus 645 ~~~ 647 (661)
+..
T Consensus 560 ~~~ 562 (571)
T PRK07710 560 GKG 562 (571)
T ss_pred CCc
Confidence 443
No 21
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=9.6e-99 Score=855.09 Aligned_cols=541 Identities=45% Similarity=0.773 Sum_probs=477.5
Q ss_pred CcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 048725 88 RKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLV 167 (661)
Q Consensus 88 ~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l 167 (661)
++++++|++.|+++||++|||+||+++++|+++|.++++|++|.++||++|+||||||+|+||+|+||++|+|||++|++
T Consensus 13 ~~~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l 92 (564)
T PRK08155 13 FTGAELIVRLLERQGIRIVTGIPGGAILPLYDALSQSTQIRHILARHEQGAGFIAQGMARTTGKPAVCMACSGPGATNLV 92 (564)
T ss_pred ccHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHcCCCeEEEECCCCcHHHHH
Confidence 68999999999999999999999999999999998766799999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 048725 168 SGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPK 247 (661)
Q Consensus 168 ~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~ 247 (661)
+||++||.+++|||+|+|+.+....+++.+|++|+.++++++|||++++.++++++..+++|++.|+++|+|||||+||.
T Consensus 93 ~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~ 172 (564)
T PRK08155 93 TAIADARLDSIPLVCITGQVPASMIGTDAFQEVDTYGISIPITKHNYLVRDIEELPQVISDAFRIAQSGRPGPVWIDIPK 172 (564)
T ss_pred HHHHHHHhcCCCEEEEeccCCcccccCCCccccchhhhhhccceEEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeecCCC
Q 048725 248 DIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTLMG 325 (661)
Q Consensus 248 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt~~g 325 (661)
|++.+++... ..+ .+. .......++++.+++++++|.+||||+|++|+|+. ++.+++.+|||++|+||++|++|
T Consensus 173 Dv~~~~~~~~-~~~--~~~-~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~~~~pv~tt~~~ 248 (564)
T PRK08155 173 DVQTAVIELE-ALP--APA-EKDAAPAFDEESIRDAAAMINAAKRPVLYLGGGVINSGAPARARELAEKAQLPTTMTLMA 248 (564)
T ss_pred hHHhhhcccc-cCC--Ccc-ccCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccchHHHHHHHHHHHCCCEEEcccc
Confidence 9987765311 001 010 01112235677899999999999999999999986 56899999999999999999999
Q ss_pred CCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcceEecc
Q 048725 326 LGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCAD 405 (661)
Q Consensus 326 kg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D 405 (661)
||+||++||+++|.+|..+...+++++++||+||++|++++++.++++..+.+..++||||+|+..+++++..++.+.+|
T Consensus 249 kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D 328 (564)
T PRK08155 249 LGMLPKAHPLSLGMLGMHGARSTNYILQEADLLIVLGARFDDRAIGKTEQFCPNAKIIHVDIDRAELGKIKQPHVAIQAD 328 (564)
T ss_pred cccCCCCChhhccCCCCCCCHHHHHHHHhCCEEEEECCCCCccccCCHhhcCCCCeEEEEECCHHHhCCCcCCCeEEecC
Confidence 99999999999999998888889999999999999999999887776656777789999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEEEEcCChhHHHHHh
Q 048725 406 LKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQ 485 (661)
Q Consensus 406 ~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~~~~~ 485 (661)
++.+|++|++.+... ....|.+++...++..+........++++..+++.|++.++++.+|+.|+|++..|..+
T Consensus 329 ~~~~l~~L~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~l~~~l~~~~iv~~D~G~~~~~~~~ 402 (564)
T PRK08155 329 VDDVLAQLLPLVEAQ------PRAEWHQLVADLQREFPCPIPKADDPLSHYGLINAVAACVDDNAIITTDVGQHQMWTAQ 402 (564)
T ss_pred HHHHHHHHHHhhccc------chHHHHHHHHHHHHhChhhcccCCCCcCHHHHHHHHHHhCCCCeEEEECCchHHHHHHH
Confidence 999999998876431 23568776665544433222222335889999999999999999999999999999999
Q ss_pred hccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHH
Q 048725 486 FYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQW 565 (661)
Q Consensus 486 ~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~ 565 (661)
++++.+|++|++++++|+||+++|+|+|+++++|+++||+++|||||+|+++||+|++++++|+++||+||++||++++.
T Consensus 403 ~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGsf~~~~~eL~ta~~~~lpvi~vV~NN~~~g~~~~~ 482 (564)
T PRK08155 403 AYPLNRPRQWLTSGGLGTMGFGLPAAIGAALANPERKVLCFSGDGSLMMNIQEMATAAENQLDVKIILMNNEALGLVHQQ 482 (564)
T ss_pred hccccCCCeEEeCCCcccccchhHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEEEEeCCcccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCCCcCCcCCCC
Q 048725 566 EDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSG 645 (661)
Q Consensus 566 ~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~~~~p~~~~~ 645 (661)
|...|..+.....+ + ..+||+++|++||+++.+|++.+||+++|+++++.++|+||||++++++...|..+.+
T Consensus 483 q~~~~~~~~~~~~~--~-----~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIeV~~~~~~~~~~~~~~~ 555 (564)
T PRK08155 483 QSLFYGQRVFAATY--P-----GKINFMQIAAGFGLETCDLNNEADPQAALQEAINRPGPALIHVRIDAEEKVYPMVPPG 555 (564)
T ss_pred HHHhcCCCeeeccC--C-----CCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCCCcccCCcCCCC
Confidence 76655432111111 0 1279999999999999999999999999999999999999999999888776666654
No 22
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=3.3e-98 Score=852.89 Aligned_cols=553 Identities=42% Similarity=0.755 Sum_probs=478.8
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNL 166 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~ 166 (661)
+++|+++|++.|+++||++|||+||+++++|+++|.++++|++|.|+||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 3 ~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~ 82 (574)
T PRK06882 3 KLSGAEMVVQSLRDEGVEYVFGYPGGSVLDIYDAIHTLGGIEHVLVRHEQAAVHMADGYARSTGKVGCVLVTSGPGATNA 82 (574)
T ss_pred cccHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhcCCCeEEEeccHHHHHHHHHHHHHhhCCCeEEEECCCccHHHH
Confidence 37899999999999999999999999999999999875579999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEec
Q 048725 167 VSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVP 246 (661)
Q Consensus 167 l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP 246 (661)
++||++||.+++|||+|+|+++....+++.+|++|+.++++++|||+.++.+++++++.+++|++.|.++++|||||+||
T Consensus 83 l~~i~~A~~~~~Pvlvi~G~~~~~~~~~~~~q~~d~~~l~~~vtk~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (574)
T PRK06882 83 ITGIATAYTDSVPLVILSGQVPSNLIGTDAFQECDMLGISRPVVKHSFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIP 162 (574)
T ss_pred HHHHHHHhhcCCCEEEEecCCCccccCCCcccccchhhhhhcccceEEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCC--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeec
Q 048725 247 KDIQQQLAVPN--WNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVAST 322 (661)
Q Consensus 247 ~dv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt 322 (661)
.|++++..... .+.+.....+ .....+++..+++++++|.+||||+|++|+|+. ++.+++.+|+|++|+||++|
T Consensus 163 ~Dv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~l~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt 240 (574)
T PRK06882 163 KDMVNPANKFTYEYPEEVSLRSY--NPTVQGHKGQIKKALKALLVAKKPVLFVGGGVITAECSEQLTQFAQKLNLPVTSS 240 (574)
T ss_pred HHHhhhhcccccccCcccccccC--CCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccchHHHHHHHHHHhCCCEEEc
Confidence 99987653211 0001111010 011123677899999999999999999999986 46799999999999999999
Q ss_pred CCCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcceE
Q 048725 323 LMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSV 402 (661)
Q Consensus 323 ~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 402 (661)
++|||+||++||+++|++|..++..+++++++|||||+||++++++.++.+..+.++.++||||.|+..++++++.++.+
T Consensus 241 ~~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i 320 (574)
T PRK06882 241 LMGLGAYPSTDKQFLGMLGMHGTYEANNAMHESDLILGIGVRFDDRTTNNLAKYCPNAKVIHIDIDPTSISKNVPAYIPI 320 (574)
T ss_pred CccCcCCCCCChhhcCCCcccccHHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHhcCccCCceEE
Confidence 99999999999999999999899999999999999999999999988877666667789999999999999999999999
Q ss_pred eccHHHHHHHHHHHhcCCCC-CCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEEEEcCChhHH
Q 048725 403 CADLKLALKGINRILGGKDA-EGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQM 481 (661)
Q Consensus 403 ~~D~~~~L~~L~~~l~~~~~-~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~ 481 (661)
.+|++.+|++|++.+..... ........|.+++.+.+.............+++..+++.|++.++++.+++.|+|++..
T Consensus 321 ~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ii~~d~g~~~~ 400 (574)
T PRK06882 321 VGSAKNVLEEFLSLLEEENLAKSQTDLTAWWQQINEWKAKKCLEFDRTSDVIKPQQVVEAIYRLTNGDAYVASDVGQHQM 400 (574)
T ss_pred ecCHHHHHHHHHHHhhhhcccccccccHHHHHHHHHHHHhChhhhccCCCCcCHHHHHHHHHhhcCCCeEEEecCchhHH
Confidence 99999999999987753210 01122356777666554333211111123588999999999999999999999999999
Q ss_pred HHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchh
Q 048725 482 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGM 561 (661)
Q Consensus 482 ~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~ 561 (661)
|..++++...|++|++++++|+|||++|+|||+++++|+++||+++|||||+|+++||+|++++++|+++||+||++|++
T Consensus 401 ~~~~~~~~~~p~~~~~~~~~g~mG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~~~lpv~~vV~NN~~~~~ 480 (574)
T PRK06882 401 FAALHYPFDKPRRWINSGGAGTMGFGLPAAIGVKFAHPEATVVCVTGDGSIQMNIQELSTAKQYDIPVVIVSLNNRFLGM 480 (574)
T ss_pred HHHHhccccCCCcEEeCCCcccccchhHHHHHHHhhcCCCcEEEEEcchhhhccHHHHHHHHHhCCCeEEEEEECchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhC-CCcEEEEEEeCCCCCcCC
Q 048725 562 VMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDT-PGPYLLDVIFPHQEHVLP 640 (661)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~-~gp~lIeV~~~~~~~~~p 640 (661)
+++.|...|.......++. ..+||.++|++||+++.+|++.+||+++|+++++. ++|.||||++++++..+|
T Consensus 481 i~~~q~~~~~~~~~~~~~~-------~~~d~~~la~a~G~~~~~v~~~~eL~~al~~a~~~~~~p~liev~i~~~~~~~~ 553 (574)
T PRK06882 481 VKQWQDLIYSGRHSQVYMN-------SLPDFAKLAEAYGHVGIQIDTPDELEEKLTQAFSIKDKLVFVDVNVDETEHVYP 553 (574)
T ss_pred HHHHHHHhcCCcccccCCC-------CCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhcCCCcEEEEEEecCccccCC
Confidence 9888866554321111111 12699999999999999999999999999999985 899999999998887777
Q ss_pred cCCCCCcc
Q 048725 641 MIPSGGAF 648 (661)
Q Consensus 641 ~~~~~~~~ 648 (661)
+.+.+..+
T Consensus 554 ~~~~~~~~ 561 (574)
T PRK06882 554 MQIRGGAM 561 (574)
T ss_pred ccCCCCch
Confidence 77665433
No 23
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=100.00 E-value=1.4e-97 Score=845.01 Aligned_cols=547 Identities=50% Similarity=0.858 Sum_probs=479.4
Q ss_pred CcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 048725 88 RKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLV 167 (661)
Q Consensus 88 ~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l 167 (661)
|+++++|++.|+++||+||||+||+.+++|+++|.++++|++|.|+||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~~l~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l 80 (558)
T TIGR00118 1 MSGAEAIIESLKDEGVKTVFGYPGGAILPIYDALYNDSGIEHILVRHEQGAAHAADGYARASGKVGVVLVTSGPGATNLV 80 (558)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHH
Confidence 57999999999999999999999999999999998766799999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 048725 168 SGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPK 247 (661)
Q Consensus 168 ~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~ 247 (661)
+||++|+.+++|||+|+|++++...+++.+|++||.++++++|||++++.+++++++.+++|++.|+++|+|||||+||.
T Consensus 81 ~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~ 160 (558)
T TIGR00118 81 TGIATAYMDSIPMVVFTGQVPTSLIGSDAFQEADILGITMPITKHSFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPK 160 (558)
T ss_pred HHHHHHHhcCCCEEEEecCCCccccCCCCCcccChhhhhcCccceeEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeecCCC
Q 048725 248 DIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTLMG 325 (661)
Q Consensus 248 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt~~g 325 (661)
|++.+++..........+.. .....+.+..+++++++|.+||||+|++|+|+. ++.++|.+|+|++|+||++|++|
T Consensus 161 dv~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~l~~pv~tt~~~ 238 (558)
T TIGR00118 161 DVTTAEIEYPYPEKVNLPGY--RPTVKGHPLQIKKAAELINLAKKPVILVGGGVIIAGASEELKELAERIQIPVTTTLMG 238 (558)
T ss_pred hhhhhhccccccccccccCC--CCCCCCCHHHHHHHHHHHHhCCCcEEEECCCccccchHHHHHHHHHHhCCCEEEcccc
Confidence 99876653111000101110 011124567899999999999999999999996 57899999999999999999999
Q ss_pred CCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcceEecc
Q 048725 326 LGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCAD 405 (661)
Q Consensus 326 kg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D 405 (661)
||++|++||+++|.+|..|...+++++++||+||+||+++++..++++..+.++.++||||.|+..+++++.+++.+.+|
T Consensus 239 kg~~~e~hp~~~G~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d 318 (558)
T TIGR00118 239 LGSFPEDHPLSLGMLGMHGTKTANLAVHECDLIIAVGARFDDRVTGNLAKFAPNAKIIHIDIDPAEIGKNVRVDIPIVGD 318 (558)
T ss_pred CCCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCcEEEEeCCHHHhCCcCCCCeEEecC
Confidence 99999999999999999899999999999999999999999888877766667789999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEEEEcCChhHHHHHh
Q 048725 406 LKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQ 485 (661)
Q Consensus 406 ~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~~~~~ 485 (661)
++.+|++|++.+..... .....|.++++..+.............+++..+++.|++.++++.+++.|+|++..|..+
T Consensus 319 ~~~~l~~L~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~ 395 (558)
T TIGR00118 319 ARNVLEELLKKLFELKE---RKESAWLEQINKWKKEYPLKMDYTEEGIKPQQVIEELSRVTKDEAIVTTDVGQHQMWAAQ 395 (558)
T ss_pred HHHHHHHHHHhhhhccc---cCcHHHHHHHHHHHHhChhhccCCCCCcCHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHH
Confidence 99999999987753210 123468777665544332211122345899999999999999999999999999999999
Q ss_pred hccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHH
Q 048725 486 FYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQW 565 (661)
Q Consensus 486 ~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~ 565 (661)
+++..+|++|++++++|+|||++|+|||++++.|+++||+++|||+|+|++|||+|++++++|+++||+||++|++++..
T Consensus 396 ~~~~~~p~~~~~~~~~g~mG~~l~aaiGa~la~~~~~vv~~~GDG~f~~~~~eL~ta~~~~l~~~~vv~NN~~~~~~~~~ 475 (558)
T TIGR00118 396 FYPFRKPRRFITSGGLGTMGFGLPAAIGAKVAKPESTVICITGDGSFQMNLQELSTAVQYDIPVKILILNNRYLGMVRQW 475 (558)
T ss_pred hcccCCCCeEEeCCccccccchhhHHHhhhhhCCCCcEEEEEcchHHhccHHHHHHHHHhCCCeEEEEEeCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCCCcCCcCCCC
Q 048725 566 EDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSG 645 (661)
Q Consensus 566 ~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~~~~p~~~~~ 645 (661)
|+..|........+. ..+||.++|++||+++.+|++.+||+++|+++++.+||+||||++++++...|+++.+
T Consensus 476 q~~~~~~~~~~~~~~-------~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~~p~liev~~~~~~~~~~~~~~~ 548 (558)
T TIGR00118 476 QELFYEERYSHTHMG-------SLPDFVKLAEAYGIKGIRIEKPEELDEKLKEALSSNEPVLLDVVVDKPENVLPMVAPG 548 (558)
T ss_pred HHHhcCCceeeccCC-------CCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEeCCccccccccCCC
Confidence 766554321111111 1279999999999999999999999999999999999999999999888777777754
Q ss_pred C
Q 048725 646 G 646 (661)
Q Consensus 646 ~ 646 (661)
.
T Consensus 549 ~ 549 (558)
T TIGR00118 549 G 549 (558)
T ss_pred C
Confidence 3
No 24
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=100.00 E-value=1.1e-97 Score=848.34 Aligned_cols=535 Identities=27% Similarity=0.426 Sum_probs=464.9
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNL 166 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~ 166 (661)
+|+++++|++.|+++||++|||+||+.+++|+++|.+ .+|++|.||||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 1 ~~~~~~~l~~~L~~~GV~~vFGipG~~~~~l~dal~~-~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~ 79 (579)
T TIGR03457 1 KMTPSEAFVEVLVANGVTHAFGIMGSAFMDAMDLFPP-AGIRFIPVVHEQGAGHMADGFARVTGRMSMVIGQNGPGVTNC 79 (579)
T ss_pred CCcHHHHHHHHHHHCCCCEEEEccCcchHHHHHHHhh-cCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCchHHHH
Confidence 4789999999999999999999999999999999976 469999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEec
Q 048725 167 VSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVP 246 (661)
Q Consensus 167 l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP 246 (661)
++||++||.+++|||+|+|+.+....+++.+|++|+.++++++|||++++.+++++++.+++||+.|.+++ |||||+||
T Consensus 80 ~~gla~A~~~~~Pvl~I~g~~~~~~~~~~~~Q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~-GPV~l~iP 158 (579)
T TIGR03457 80 VTAIAAAYWAHTPVVIVTPEAGTKTIGLGGFQEADQLPMFQEFTKYQGHVRHPSRMAEVLNRCFERAWREM-GPAQLNIP 158 (579)
T ss_pred HHHHHHHhhcCCCEEEEeCCCccccCCCCCCcccchhhhhhcceeEEEecCCHHHHHHHHHHHHHHHhcCC-CCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986 99999999
Q ss_pred cchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeecCC
Q 048725 247 KDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTLM 324 (661)
Q Consensus 247 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt~~ 324 (661)
.|++.+++.... +...+ . ....+++..+++++++|.+||||+|++|+|+. ++.++|++|||++|+||++|++
T Consensus 159 ~Dv~~~~~~~~~--~~~~~--~--~~~~~~~~~i~~~~~~L~~A~rP~i~~G~g~~~~~a~~~l~~lae~~~~PV~tt~~ 232 (579)
T TIGR03457 159 RDYFYGEIDVEI--PRPVR--L--DRGAGGATSLAQAARLLAEAKFPVIISGGGVVMGDAVEECKALAERLGAPVVNSYL 232 (579)
T ss_pred cchhhhhccccc--Ccccc--c--CCCCCCHHHHHHHHHHHHhCCCCEEEECcCccccChHHHHHHHHHHhCCCEEEccc
Confidence 999877653211 11000 0 12234778899999999999999999999996 5789999999999999999999
Q ss_pred CCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCC---cccccCCCCeEEEEcCCchhhccCCCCcce
Q 048725 325 GLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTG---KLEAFASRAKIVHIDIDSAEIGKNKQPHVS 401 (661)
Q Consensus 325 gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~---~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~ 401 (661)
|||+||++||+++|++|..|+..+++++++||+||+||++++++.+. ....+..++++||||+|+..+++++.+++.
T Consensus 233 gkg~~p~~hp~~~G~~g~~g~~~~~~~l~~aDlil~lG~~~~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~ 312 (579)
T TIGR03457 233 HNDSFPASHPLWVGPLGYQGSKAAMKLISDADVVLALGTRLGPFGTLPQYGIDYWPKNAKIIQVDANAKMIGLVKKVTVG 312 (579)
T ss_pred ccccCCCCCchhccCCcCcchHHHHHHHHhCCEEEEECCCCcccccccccccccCCCCCeEEEEeCCHHHhCCCCCCCee
Confidence 99999999999999999999999999999999999999999876442 112455678999999999999999999999
Q ss_pred EeccHHHHHHHHHHHhcCCCC--CC-------CCCcHHHHHHHHHHHhhCCC--------CcCCCCCCCChHHHHHHHhh
Q 048725 402 VCADLKLALKGINRILGGKDA--EG-------RFDFSAWREELDEQKVKYPL--------SFKTFEESIPPQYAIQVLDE 464 (661)
Q Consensus 402 i~~D~~~~L~~L~~~l~~~~~--~~-------~~~~~~w~~~l~~~~~~~~~--------~~~~~~~~i~~~~~~~~l~~ 464 (661)
+++|++.+|++|++.+..... .. ......|.+++.+.+..... ........+++.++++.|++
T Consensus 313 i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~ 392 (579)
T TIGR03457 313 ICGDAKAAAAEILQRLAGKAGDANRAERKAKIQAERSAWEQELSEMTHERDPFSLDMIVEQRQEEGNWLHPRQVLRELEK 392 (579)
T ss_pred EecCHHHHHHHHHHhhhhcccccchhhhhhhhhhhHHHHHHHHHHHHhhccccccccccccccCCCCCcCHHHHHHHHHH
Confidence 999999999999998853210 00 01234566655544321110 00112345899999999999
Q ss_pred hcCCCcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHH
Q 048725 465 LTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKV 544 (661)
Q Consensus 465 ~l~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~ 544 (661)
.++++.|++.|+|++..|..+++++.+|++|++++++|+|||++|+|||+++++|+++||+++|||||+|++|||+|++|
T Consensus 393 ~l~~~~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Tavr 472 (579)
T TIGR03457 393 AMPEDAIVSTDIGNINSVANSYLRFEKPRKFLAPMSFGNCGYAFPTIIGAKIAAPDRPVVAYAGDGAWGMSMNEIMTAVR 472 (579)
T ss_pred hCCCCeEEEECCchhHHHHHHhcCcCCCCeEEcCCccccccchHHHHHhhhhhCCCCcEEEEEcchHHhccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh---
Q 048725 545 EKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD--- 621 (661)
Q Consensus 545 ~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~--- 621 (661)
+++|+++||+||++||++++.|+..|+.......+. ..+||.++|++||+++.+|++++||+++|+++++
T Consensus 473 ~~lpvi~vV~NN~~yg~i~~~~~~~~~~~~~~~~~~-------~~~d~~~lA~a~G~~g~~v~~~~el~~al~~a~~~~~ 545 (579)
T TIGR03457 473 HDIPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELE-------SELSFAGIADAMGAKGVVVDKPEDVGPALKKAIAAQA 545 (579)
T ss_pred hCCCeEEEEEECcchHHHHHHHHHhhCCcceeccCC-------CCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhhCC
Confidence 999999999999999999888876664321111111 1169999999999999999999999999999997
Q ss_pred CCCcEEEEEEeCCCC
Q 048725 622 TPGPYLLDVIFPHQE 636 (661)
Q Consensus 622 ~~gp~lIeV~~~~~~ 636 (661)
.++|+||||++++++
T Consensus 546 ~~~p~lieV~v~~~~ 560 (579)
T TIGR03457 546 EGKTTVIEIVCTREL 560 (579)
T ss_pred CCCcEEEEEEeCCCc
Confidence 578999999999877
No 25
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=100.00 E-value=2.5e-97 Score=839.62 Aligned_cols=530 Identities=28% Similarity=0.458 Sum_probs=460.4
Q ss_pred HHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHH
Q 048725 90 GADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSG 169 (661)
Q Consensus 90 gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~g 169 (661)
|+|+|++.|+++||++|||+||+.+++|+++|.+ ++|++|.|+||++|+||||||+|+||||+||++|+|||++|+++|
T Consensus 1 ~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~-~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~g 79 (539)
T TIGR02418 1 GADLVVDQLENQGVRYVFGIPGAKIDRVFDALED-KGIELIVVRHEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTG 79 (539)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhh-CCCCEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHH
Confidence 5799999999999999999999999999999976 469999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccch
Q 048725 170 LADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDI 249 (661)
Q Consensus 170 l~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~dv 249 (661)
|++|+.+++|||+|+|+.++...+.+.+|++||.++++++|||++++.+++++++.+++||+.|+++|+|||||+||.|+
T Consensus 80 l~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~dv 159 (539)
T TIGR02418 80 LATANSEGDPVVAIGGQVKRADLLKLTHQSMDNVALFRPITKYSAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDV 159 (539)
T ss_pred HHHHhhcCCCEEEEeCCCcccccccCcccccchhhhhhcceeeeeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChhH
Confidence 99999999999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeecCCCCC
Q 048725 250 QQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTLMGLG 327 (661)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt~~gkg 327 (661)
+.+++.... ... . .......++++.+++++++|.+||||+|++|.|+. ++.+++++|||++|+||++|++|||
T Consensus 160 ~~~~~~~~~---~~~-~-~~~~~~~~~~~~i~~~~~~l~~A~rPvi~~G~g~~~~~a~~~l~~lae~~g~pv~tt~~gkg 234 (539)
T TIGR02418 160 VDSPVSVKA---IPA-S-YAPKLGAAPDDAIDEVAEAIQNAKLPVLLLGLRASSPETTEAVRRLLKKTQLPVVETFQGAG 234 (539)
T ss_pred hhCcccccc---cCc-c-cCCCCCCCCHHHHHHHHHHHHcCCCCEEEECCCcCcccHHHHHHHHHHHhCCCEEEccccCc
Confidence 877653210 100 0 11111234567899999999999999999999985 5789999999999999999999999
Q ss_pred CCCCCC-CCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcceEeccH
Q 048725 328 SFPGTD-ELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADL 406 (661)
Q Consensus 328 ~~p~~h-pl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~ 406 (661)
.||++| |+++|++|..++..+++++++||+||++|+++.++.+..|. +..+.++||||.|+.++++++++++.+.+|+
T Consensus 235 ~i~~~~~~~~~G~~G~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~ 313 (539)
T TIGR02418 235 AVSRELEDHFFGRVGLFRNQPGDRLLKQADLVITIGYDPIEYEPRNWN-SENDATIVHIDVEPAQIDNNYQPDLELVGDI 313 (539)
T ss_pred CCCCCCChhhcccCcCCCcHHHHHHHHhCCEEEEecCcccccCccccC-cCCCCeEEEEeCChHHcCCccCCCeEEecCH
Confidence 999997 78999999989888899999999999999999877665443 2234689999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCc-CCCCCCCChHHHHHHHhhhcCCCcEEEEcCChhHHHHHh
Q 048725 407 KLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSF-KTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQ 485 (661)
Q Consensus 407 ~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~-~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~~~~~ 485 (661)
+.+|++|++.+..... ......|.+.+++.++...... .....++++.++++.|++.++++.+++.|+|++..|..+
T Consensus 314 ~~~l~~L~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ii~~d~G~~~~~~~~ 391 (539)
T TIGR02418 314 ASTLDLLAERIPGYEL--PPDALAILEDLKQQREALDRVPATLKQAHLHPLEIIKAMQAIVTDDVTVTVDMGSHYIWMAR 391 (539)
T ss_pred HHHHHHHHHhhccccC--ccchHHHHHHHHHHHHHhhhccccCCCCCcCHHHHHHHHHhhCCCCCEEEECCcHHHHHHHH
Confidence 9999999987754211 1123346554444333221110 111235889999999999999999999999999999999
Q ss_pred hccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHH
Q 048725 486 FYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQW 565 (661)
Q Consensus 486 ~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~ 565 (661)
++....|++++.+.++|+|||++|+|||+++|.|+++||+++|||||+|++|||+|+++|++|+++||+||++|++++..
T Consensus 392 ~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~ 471 (539)
T TIGR02418 392 YFRSYRARHLLISNGMQTLGVALPWAIGAALVRPNTKVVSVSGDGGFLFSSMELETAVRLKLNIVHIIWNDNGYNMVEFQ 471 (539)
T ss_pred hcccCCCCceecCCCccccccHHHHHHHHHHhCCCCcEEEEEcchhhhchHHHHHHHHHhCCCeEEEEEECCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred HHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCCC
Q 048725 566 EDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEH 637 (661)
Q Consensus 566 ~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~~ 637 (661)
|+..|+. .....+ ..+||.++|++||+++.+|++++||+++|+++++.++|.||||++++++.
T Consensus 472 ~~~~~~~-~~~~~~--------~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~a~~~~~p~lIev~v~~~~~ 534 (539)
T TIGR02418 472 EEMKYQR-SSGVDF--------GPIDFVKYAESFGAKGLRVESPDQLEPTLRQAMEVEGPVVVDIPVDYSDN 534 (539)
T ss_pred HHHhcCC-cccccC--------CCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEecCccc
Confidence 6655531 111111 13799999999999999999999999999999999999999999997764
No 26
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=100.00 E-value=2.6e-97 Score=847.01 Aligned_cols=533 Identities=28% Similarity=0.377 Sum_probs=460.3
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcC-CCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRS-NNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATN 165 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~-~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N 165 (661)
+++++|+|++.|+++||+||||+||+.+++|+++|.+. ++|++|.+|||++|+||||||+|+||+++||++|+|||++|
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n 81 (597)
T PRK08273 2 SQTVADFILERLREWGVRRVFGYPGDGINGLLGALGRADDKPEFVQARHEEMAAFMAVAHAKFTGEVGVCLATSGPGAIH 81 (597)
T ss_pred CccHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHH
Confidence 37899999999999999999999999999999999764 45999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhccc-ccccccCCcCcHHHHHHHHHHHhhcCCCceEEEE
Q 048725 166 LVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSIT-KHNYLVLDVDDIPRIVREAFLLATSGRPGPVLID 244 (661)
Q Consensus 166 ~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~it-k~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~ 244 (661)
+++||++||.+++|||+|+|+.++...+++.+|++|+.++++++| ||++++.+++++++.+++|++.|++++ |||||+
T Consensus 82 ~~~gi~~A~~d~vPvl~I~G~~~~~~~~~~~~q~~d~~~l~~~vt~k~~~~v~~~~~~~~~l~~A~~~A~~~~-gPV~i~ 160 (597)
T PRK08273 82 LLNGLYDAKLDHVPVVAIVGQQARAALGGHYQQEVDLQSLFKDVAGAFVQMVTVPEQLRHLVDRAVRTALAER-TVTAVI 160 (597)
T ss_pred HHHHHHHHHhcCCCEEEEecCCchhhcCCCCCCccCHHHHHHHHHHHHeeEeCCHHHHHHHHHHHHHHHhhCC-CCEEEE
Confidence 999999999999999999999999999999999999999999999 999999999999999999999999976 999999
Q ss_pred eccchhhhccCCCCCCC---CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCccchHHHHHHHHHHhCCCeee
Q 048725 245 VPKDIQQQLAVPNWNQP---IKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVAS 321 (661)
Q Consensus 245 iP~dv~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~~a~~~l~~lae~lg~PV~t 321 (661)
||.|++.+++....... ...+.+ ......++++.+++++++|.+||||+|++|+|+.++.+++.+|||++|+||++
T Consensus 161 iP~Dv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~a~~~L~~AkrPvi~~G~g~~~a~~~l~~lae~~~~PV~t 239 (597)
T PRK08273 161 LPNDVQELEYEPPPHAHGTVHSGVGY-TRPRVVPYDEDLRRAAEVLNAGRKVAILVGAGALGATDEVIAVAERLGAGVAK 239 (597)
T ss_pred eCcchhhCcccCccccccccccccCC-CCCCCCCCHHHHHHHHHHHhcCCCEEEEECcchHhHHHHHHHHHHHhCCceee
Confidence 99999876542110000 000010 11112357888999999999999999999999988899999999999999999
Q ss_pred cCCCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcce
Q 048725 322 TLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVS 401 (661)
Q Consensus 322 t~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~ 401 (661)
|++|||+||++||+++|++|..|+..+++++++|||||+||++++.... ....++.++||||+|+.++++++++++.
T Consensus 240 t~~gkg~~~e~hp~~~G~~G~~g~~~a~~~~~~aDlvl~lG~~~~~~~~---~~~~~~~~~i~Id~d~~~~~~~~~~~~~ 316 (597)
T PRK08273 240 ALLGKAALPDDLPWVTGSIGLLGTKPSYELMRECDTLLMVGSSFPYSEF---LPKEGQARGVQIDIDGRMLGLRYPMEVN 316 (597)
T ss_pred cccCcccCCCCCccceecCCCCccHHHHHHHHhCCEEEEeCCCCCHHhc---CCCCCCCeEEEEeCCHHHcCCCCCCCce
Confidence 9999999999999999999999999999999999999999999853211 1112356899999999999999999999
Q ss_pred EeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCC----cCCCCCCCChHHHHHHHhhhcCCCcEEEEcCC
Q 048725 402 VCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLS----FKTFEESIPPQYAIQVLDELTNGEAIISTGVG 477 (661)
Q Consensus 402 i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~----~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G 477 (661)
+++|++.+|++|++.+.... ...|.+.+.+.+..+... ......+++++++++.|++.++++.|++.|+|
T Consensus 317 i~~D~~~~l~~L~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~l~~~l~~~~ivv~d~G 390 (597)
T PRK08273 317 LVGDAAETLRALLPLLERKK------DRSWRERIEKWVARWWETLEARAMVPADPVNPQRVFWELSPRLPDNAILTADSG 390 (597)
T ss_pred EecCHHHHHHHHHHhhhccC------CHHHHHHHHHHHHHhHhhhhhhhcCCCCCcCHHHHHHHHHhhCCCCeEEEECCc
Confidence 99999999999998875421 234655544433322110 11123469999999999999999999999999
Q ss_pred hhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccC-hHHHHHHHHc-----CCCeEE
Q 048725 478 QHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMN-VQELATIKVE-----KLPIKI 551 (661)
Q Consensus 478 ~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~-~~eL~ta~~~-----~lpv~i 551 (661)
++..|..++++..++.+++.++++|+|||++|+|||+++|+|+++||+|+|||||+|+ +|||+|++++ ++|+++
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~s~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~~EL~Ta~r~~~~~~~lpvii 470 (597)
T PRK08273 391 SCANWYARDLRMRRGMMASLSGTLATMGPAVPYAIAAKFAHPDRPVIALVGDGAMQMNGMAELITVAKYWRQWSDPRLIV 470 (597)
T ss_pred HHHHHHHHhCCCCCCCeEEecCccccccchHHHHHHHHHhCCCCcEEEEEcchhHhccchHHHHHHHHHhhcccCCCEEE
Confidence 9999999999999999999999999999999999999999999999999999999999 7999999999 999999
Q ss_pred EEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEE
Q 048725 552 LLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVI 631 (661)
Q Consensus 552 vV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~ 631 (661)
||+||++|+++++.|...++........ ....+||+++|++||+++.+|++.+||+++|+++++.++|+||||+
T Consensus 471 vV~NN~~~~~i~~~q~~~~~~~~~~~~~------~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIeV~ 544 (597)
T PRK08273 471 LVLNNRDLNQVTWEQRVMEGDPKFEASQ------DLPDVPYARFAELLGLKGIRVDDPEQLGAAWDEALAADRPVVLEVK 544 (597)
T ss_pred EEEeCCcchHHHHHHHHhcCCCcccccc------cCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 9999999999988775544321111111 1123799999999999999999999999999999999999999999
Q ss_pred eCCCC
Q 048725 632 FPHQE 636 (661)
Q Consensus 632 ~~~~~ 636 (661)
+++++
T Consensus 545 ~~~~~ 549 (597)
T PRK08273 545 TDPNV 549 (597)
T ss_pred eCCCC
Confidence 99876
No 27
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=5.5e-97 Score=843.15 Aligned_cols=549 Identities=45% Similarity=0.763 Sum_probs=475.6
Q ss_pred CcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 048725 88 RKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLV 167 (661)
Q Consensus 88 ~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l 167 (661)
|+|+|+|++.|+++||++|||+||+++++|+++|.+. +|++|.|+||++|+||||||+|+||+|+||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~l 79 (586)
T PRK06276 1 MKGAEAIIKALEAEGVKIIFGYPGGALLPFYDALYDS-DLIHILTRHEQAAAHAADGYARASGKVGVCVATSGPGATNLV 79 (586)
T ss_pred CcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhC-CCcEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHH
Confidence 5799999999999999999999999999999999764 699999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 048725 168 SGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPK 247 (661)
Q Consensus 168 ~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~ 247 (661)
+||++||.+++|||+|+|+.++...+.+.+|++||.++++++|||++++.+++++++.+++|++.|+++|+|||||+||.
T Consensus 80 ~~i~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~tk~s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (586)
T PRK06276 80 TGIATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGIFMPITKHNFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPK 159 (586)
T ss_pred HHHHHHHhcCCCEEEEeCCCCccccCCCCCccccHhhHHhhhcceEEecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeecCC
Q 048725 248 DIQQQLAVPNW-NQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTLM 324 (661)
Q Consensus 248 dv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt~~ 324 (661)
|++.+++.... ..+.............++...+++++++|.+||||+|++|.|+. ++.+++.+|+|++|+||++|++
T Consensus 160 Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~ 239 (586)
T PRK06276 160 DVQEGELDLEKYPIPAKIDLPGYKPTTFGHPLQIKKAAELIAEAERPVILAGGGVIISGASEELIELSELVKIPVCTTLM 239 (586)
T ss_pred hHHhhhhccccccccccccccCCCCCCCCCHHHHHHHHHHHHcCCCeEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCC
Confidence 99877653110 00000000000111124577899999999999999999999985 5789999999999999999999
Q ss_pred CCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcceEec
Q 048725 325 GLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCA 404 (661)
Q Consensus 325 gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~ 404 (661)
|||+||++||+++|.+|..+...+++++++|||||+||+++++..++.+..+.++.++||||.|+..+++++.+++.+.+
T Consensus 240 ~kg~~p~~hp~~~G~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~ 319 (586)
T PRK06276 240 GKGAFPEDHPLALGMVGMHGTKAANYSVTESDVLIAIGCRFSDRTTGDISSFAPNAKIIHIDIDPAEIGKNVRVDVPIVG 319 (586)
T ss_pred CCccCCCCCcccccCCCCCCCHHHHHHHHcCCEEEEECCCCCccccCCccccCCCCeEEEEECCHHHhCCcCCCceEEec
Confidence 99999999999999999989999999999999999999999988877766677778999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCC-----CcEEEEcCChh
Q 048725 405 DLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNG-----EAIISTGVGQH 479 (661)
Q Consensus 405 D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~-----d~iv~~d~G~~ 479 (661)
|++.+|++|++.+.... ......|.+.+.+.+.............+++..+++.|++.+++ +.+++.|+|++
T Consensus 320 D~~~~L~~L~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~~~~~~iv~~d~G~~ 396 (586)
T PRK06276 320 DAKNVLRDLLAELMKKE---IKNKSEWLERVKKLKKESIPRMDFDDKPIKPQRVIKELMEVLREIDPSKNTIITTDVGQN 396 (586)
T ss_pred CHHHHHHHHHHhhhhhc---ccchHHHHHHHHHHHHhccccccCCCCCcCHHHHHHHHHHhccccCCCCCeEEEeCCcHH
Confidence 99999999998775321 11235687776655443221111123458999999999999998 99999999999
Q ss_pred HHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcc
Q 048725 480 QMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHL 559 (661)
Q Consensus 480 ~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~ 559 (661)
..|..++++.++|++|++++++|+|||++|+|||+++++|+++||+++|||||+|++|||+|++++++|+++||+||++|
T Consensus 397 ~~~~~~~~~~~~p~~~~~~~~~gsmG~~lpaaiGa~la~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~~vV~NN~~~ 476 (586)
T PRK06276 397 QMWMAHFFKTSAPRSFISSGGLGTMGFGFPAAIGAKVAKPDANVIAITGDGGFLMNSQELATIAEYDIPVVICIFDNRTL 476 (586)
T ss_pred HHHHHHhcccCCCCeEEcCCCccccccchhHHHhhhhhcCCCcEEEEEcchHhhccHHHHHHHHHhCCCeEEEEEeCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCCCcC
Q 048725 560 GMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVL 639 (661)
Q Consensus 560 g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~~~~ 639 (661)
+|+++.|+..|+.+.....+. ..+||.++|++||+++.+|++++||+++|+++++.++|.||||++++.+ ..
T Consensus 477 g~~~~~~~~~~~~~~~~~~~~-------~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIeV~i~~~~-~~ 548 (586)
T PRK06276 477 GMVYQWQNLYYGKRQSEVHLG-------ETPDFVKLAESYGVKADRVEKPDEIKEALKEAIKSGEPYLLDIIIDPAE-AL 548 (586)
T ss_pred HHHHHHHHHHhCCCcccccCC-------CCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEecccc-cC
Confidence 999887766554321111111 1279999999999999999999999999999999999999999999776 55
Q ss_pred CcCCCCCcc
Q 048725 640 PMIPSGGAF 648 (661)
Q Consensus 640 p~~~~~~~~ 648 (661)
|..+.+..+
T Consensus 549 ~~~~~~~~~ 557 (586)
T PRK06276 549 PMVPPGGNL 557 (586)
T ss_pred CcCCCCCch
Confidence 666554433
No 28
>PRK08617 acetolactate synthase; Reviewed
Probab=100.00 E-value=2.4e-97 Score=842.12 Aligned_cols=535 Identities=29% Similarity=0.449 Sum_probs=463.9
Q ss_pred CCCCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhH
Q 048725 85 DQPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGAT 164 (661)
Q Consensus 85 ~~~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~ 164 (661)
+.+++++|+|++.|+++||++|||+||+++++|+++|.+ ++|++|.++||++|+|||+||+|+||+|+||++|+|||++
T Consensus 2 ~~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~-~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~vt~GpG~~ 80 (552)
T PRK08617 2 DKKKYGADLVVDSLINQGVKYVFGIPGAKIDRVFDALED-SGPELIVTRHEQNAAFMAAAIGRLTGKPGVVLVTSGPGVS 80 (552)
T ss_pred CccccHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhh-CCCCEEEeccHHHHHHHHHhHhhhcCCCEEEEECCCCcHh
Confidence 346899999999999999999999999999999999976 4799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEE
Q 048725 165 NLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLID 244 (661)
Q Consensus 165 N~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~ 244 (661)
|+++|+++||.+++|||+|+|+.++...+++.+|++||.++++++|||++++.+++++++.+++|++.|+++|+|||||+
T Consensus 81 N~l~gl~~A~~~~~PvlvisG~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~ 160 (552)
T PRK08617 81 NLATGLVTATAEGDPVVAIGGQVKRADRLKRTHQSMDNVALFRPITKYSAEVQDPDNLSEVLANAFRAAESGRPGAAFVS 160 (552)
T ss_pred HhHHHHHHHhhcCCCEEEEecCCcccccCCCCccccchhhhhhhhcceEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEe
Confidence 99999999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred eccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeec
Q 048725 245 VPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVAST 322 (661)
Q Consensus 245 iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt 322 (661)
||.|++.++..... .. .........++++.+++++++|.+||||+|++|+|+. ++.+++++|||++|+||++|
T Consensus 161 iP~dv~~~~~~~~~---~~--~~~~~~~~~~~~~~i~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~~pV~tt 235 (552)
T PRK08617 161 LPQDVVDAPVTSKA---IA--PLSKPKLGPASPEDINYLAELIKNAKLPVLLLGMRASSPEVTAAIRRLLERTNLPVVET 235 (552)
T ss_pred Chhhhhhccccccc---cc--cccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcchhhHHHHHHHHHHHhCCCEEec
Confidence 99999877652110 10 0001111124677899999999999999999999986 56799999999999999999
Q ss_pred CCCCCCCCCCCC-CCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcce
Q 048725 323 LMGLGSFPGTDE-LSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVS 401 (661)
Q Consensus 323 ~~gkg~~p~~hp-l~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~ 401 (661)
++|||.||++|| +++|++|..+...+++++++||+||+||+++.++.+..|.. ....++||||.|+..+++++++++.
T Consensus 236 ~~gkg~~~~~hp~~~~G~~g~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~-~~~~~~i~id~d~~~~~~~~~~~~~ 314 (552)
T PRK08617 236 FQAAGVISRELEDHFFGRVGLFRNQPGDELLKKADLVITIGYDPIEYEPRNWNS-EGDATIIHIDVLPAEIDNYYQPERE 314 (552)
T ss_pred cccCccCCCCCchhhccCCcCCCcHHHHHHHHhCCEEEEecCcccccccccccc-CCCCcEEEEeCChHHhCCccCCCeE
Confidence 999999999998 69999998888888999999999999999987665544432 2356899999999999999999999
Q ss_pred EeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCc-CCCCCCCChHHHHHHHhhhcCCCcEEEEcCChhH
Q 048725 402 VCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSF-KTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQ 480 (661)
Q Consensus 402 i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~-~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~ 480 (661)
+.+|++.+|+.|++.++.... ......|.+.+++..+...... ......+++..+++.|++.++++.+++.|+|++.
T Consensus 315 i~~D~~~~l~~L~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ii~~d~G~~~ 392 (552)
T PRK08617 315 LIGDIAATLDLLAEKLDGLSL--SPQSLEILEELRAQLEELAERPARLEEGAVHPLRIIRALQDIVTDDTTVTVDVGSHY 392 (552)
T ss_pred EeCCHHHHHHHHHHhhhcccC--ccchHHHHHHHHHHHHHhhhhhcccCCCCcCHHHHHHHHHHhcCCCcEEEeCCcHHH
Confidence 999999999999987753211 1123456655544332221111 1123458899999999999999999999999999
Q ss_pred HHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcch
Q 048725 481 MWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLG 560 (661)
Q Consensus 481 ~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g 560 (661)
.|..++++...|++++.+.++|+|||++|+|||+++++|+++||+++|||||+|++|||+|++++++|+++||+||++|+
T Consensus 393 ~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la~p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~~vV~NN~~~~ 472 (552)
T PRK08617 393 IWMARYFRSYEPRHLLFSNGMQTLGVALPWAIAAALVRPGKKVVSVSGDGGFLFSAMELETAVRLKLNIVHIIWNDGHYN 472 (552)
T ss_pred HHHHHhccccCCCeEEecCccccccccccHHHhhHhhcCCCcEEEEEechHHhhhHHHHHHHHHhCCCeEEEEEECCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCCC
Q 048725 561 MVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEH 637 (661)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~~ 637 (661)
++++.|...|.. .....+. .+||.++|++||+++++|++++||+++|+++++.++|.||||++++++.
T Consensus 473 ~~~~~~~~~~~~-~~~~~~~--------~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~liev~~~~~~~ 540 (552)
T PRK08617 473 MVEFQEEMKYGR-SSGVDFG--------PVDFVKYAESFGAKGLRVTSPDELEPVLREALATDGPVVIDIPVDYSDN 540 (552)
T ss_pred hHHHHHHhhcCC-cccCCCC--------CCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCcEEEEEEeccccc
Confidence 998777555521 1111111 2799999999999999999999999999999999999999999997764
No 29
>PRK08322 acetolactate synthase; Reviewed
Probab=100.00 E-value=3.9e-97 Score=840.37 Aligned_cols=529 Identities=31% Similarity=0.491 Sum_probs=459.8
Q ss_pred CcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 048725 88 RKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLV 167 (661)
Q Consensus 88 ~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l 167 (661)
|+++|+|++.|+++||++|||+||+++++|+++|.+ ++|++|.++||++|+|||+||||+||||+||++|+|||++|++
T Consensus 1 m~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~-~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~ 79 (547)
T PRK08322 1 MKAADLFVKCLENEGVEYIFGIPGEENLDLLEALRD-SSIKLILTRHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLV 79 (547)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHh-cCCcEEEeccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHH
Confidence 689999999999999999999999999999999965 5699999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 048725 168 SGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPK 247 (661)
Q Consensus 168 ~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~ 247 (661)
+||++||.+++|||+|+|+++....+++.+|++||.++++++|||++++.+++++++.+++||+.|+++|+|||||+||.
T Consensus 80 ~~i~~A~~~~~Pll~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (547)
T PRK08322 80 TGVAYAQLGGMPMVAITGQKPIKRSKQGSFQIVDVVAMMAPLTKWTRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPE 159 (547)
T ss_pred HHHHHHhhcCCCEEEEeccccccccCCCccccccHHHHhhhheeEEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcCh
Confidence 99999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeecCCC
Q 048725 248 DIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTLMG 325 (661)
Q Consensus 248 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt~~g 325 (661)
|++.++.... +.. ... .....++.+.+++++++|.+||||+|++|+|+. ++.+++.+|||++|+||++|++|
T Consensus 160 dv~~~~~~~~---~~~--~~~-~~~~~~~~~~i~~~~~~l~~A~rPviv~G~g~~~~~a~~~l~~lae~~~~pv~tt~~g 233 (547)
T PRK08322 160 DIAAEETDGK---PLP--RSY-SRRPYASPKAIERAAEAIQAAKNPLILIGAGANRKTASKALTEFVDKTGIPFFTTQMG 233 (547)
T ss_pred hhhhCccccc---ccc--ccC-CCCCCCCHHHHHHHHHHHHhCCCcEEEECCCcchhcHHHHHHHHHHHhCCCEEEcccc
Confidence 9987654211 111 001 111235678899999999999999999999985 56899999999999999999999
Q ss_pred CCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcceEecc
Q 048725 326 LGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCAD 405 (661)
Q Consensus 326 kg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D 405 (661)
||.||++||+++|++|..+...+++++++||+||++|+++.++.+..|. +..+.++||||+|+..+++++.+++.+++|
T Consensus 234 kg~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlil~lG~~l~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~D 312 (547)
T PRK08322 234 KGVIPETHPLSLGTAGLSQGDYVHCAIEHADLIINVGHDVIEKPPFFMN-PNGDKKVIHINFLPAEVDPVYFPQVEVVGD 312 (547)
T ss_pred CCcCCCCCchhccCCCCCCCHHHHHHHHhCCEEEEECCCCccccccccC-CCCCCeEEEEeCCHHHcCCCcCCCeEEecC
Confidence 9999999999999999888888999999999999999999877655443 334678999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCc-CCCCCCCChHHHHHHHhhhcCCCcEEEEcCChhHHHHH
Q 048725 406 LKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSF-KTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAA 484 (661)
Q Consensus 406 ~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~-~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~~~~ 484 (661)
++.+|++|.+.+.... .+...|..++++......... .....++++.++++.|++.++++.+++.|+|++.+|..
T Consensus 313 ~~~~l~~L~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ii~~d~G~~~~~~~ 388 (547)
T PRK08322 313 IANSLWQLKERLADQP----HWDFPRFLKIREAIEAHLEEGADDDRFPMKPQRIVADLRKVMPDDDIVILDNGAYKIWFA 388 (547)
T ss_pred HHHHHHHHHHhccccc----cccHHHHHHHHHHHHHhhhhcccCCCCCcCHHHHHHHHHHHCCCCeEEEECCcHHHHHHH
Confidence 9999999998775321 111223322222111111110 11123588999999999999999999999999999999
Q ss_pred hhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHH
Q 048725 485 QFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQ 564 (661)
Q Consensus 485 ~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~ 564 (661)
++++..+|++++.++++|+|||++|+|||+++++|+++||+++|||||+|+++||+|++++++|+++||+||++|+++++
T Consensus 389 ~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~iiV~NN~~~g~~~~ 468 (547)
T PRK08322 389 RNYRAYEPNTCLLDNALATMGAGLPSAIAAKLVHPDRKVLAVCGDGGFMMNSQELETAVRLGLPLVVLILNDNAYGMIRW 468 (547)
T ss_pred HhcccCCCCCEEcCCCcccccchhHHHHHHHHhCCCCcEEEEEcchhHhccHHHHHHHHHhCCCeEEEEEeCCCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCCC
Q 048725 565 WEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEH 637 (661)
Q Consensus 565 ~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~~ 637 (661)
.|...+.. .....+ ..+||+++|++||+++.+|++.+||+++|+++++.+||+||||++++++.
T Consensus 469 ~~~~~~~~-~~~~~~--------~~~df~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIev~v~~~~~ 532 (547)
T PRK08322 469 KQENMGFE-DFGLDF--------GNPDFVKYAESYGAKGYRVESADDLLPTLEEALAQPGVHVIDCPVDYSEN 532 (547)
T ss_pred HHHhhcCC-cccccC--------CCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEecCccC
Confidence 77554432 111111 12799999999999999999999999999999999999999999987664
No 30
>PRK08611 pyruvate oxidase; Provisional
Probab=100.00 E-value=1.2e-96 Score=838.29 Aligned_cols=530 Identities=30% Similarity=0.479 Sum_probs=458.3
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcC-CCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRS-NNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATN 165 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~-~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N 165 (661)
+++++|+|++.|+++||++|||+||+++++|+++|.++ ++|++|.++||++|+||||||+|+||||+||++|+|||++|
T Consensus 3 ~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N 82 (576)
T PRK08611 3 KIKAGEALVKLLQDWGIDHVYGIPGDSIDAVVDALRKEQDKIKFIQVRHEEVAALAAAAYAKLTGKIGVCLSIGGPGAIH 82 (576)
T ss_pred CCcHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHHhcCCCCeEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCCcHHH
Confidence 57999999999999999999999999999999999753 46999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEe
Q 048725 166 LVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDV 245 (661)
Q Consensus 166 ~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~i 245 (661)
+++||++||.+++|||+|+|+++....+++.+|++||.++++++|||++++.+++++++.+++|++.|++++ |||||+|
T Consensus 83 ~l~gla~A~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~-GPV~l~i 161 (576)
T PRK08611 83 LLNGLYDAKMDHVPVLALAGQVTSDLLGTDFFQEVNLEKMFEDVAVYNHQIMSAENLPEIVNQAIRTAYEKK-GVAVLTI 161 (576)
T ss_pred HHHHHHHHhhcCCCEEEEecCCcccccCCCCccccCHHHHhhcccceeEEeCCHHHHHHHHHHHHHHHhhCC-CCEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999975 9999999
Q ss_pred ccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCccchHHHHHHHHHHhCCCeeecCCC
Q 048725 246 PKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMG 325 (661)
Q Consensus 246 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~~a~~~l~~lae~lg~PV~tt~~g 325 (661)
|.|++.+++.... ....+.. ......++++.+++++++|++||||+|++|+|+.++.+++.+|+|++|+||++|++|
T Consensus 162 P~Dv~~~~~~~~~--~~~~~~~-~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~a~~~l~~lae~~~~PV~tt~~g 238 (576)
T PRK08611 162 PDDLPAQKIKDTT--NKTVDTF-RPTVPSPKPKDIKKAAKLINKAKKPVILAGLGAKHAKEELLAFAEKAKIPIIHTLPA 238 (576)
T ss_pred Chhhhhccccccc--ccccccC-CCCCCCCCHHHHHHHHHHHHcCCCcEEEECcCcchHHHHHHHHHHHhCCCEEEcccc
Confidence 9999876653110 0001111 111223567889999999999999999999999888899999999999999999999
Q ss_pred CCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcceEecc
Q 048725 326 LGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCAD 405 (661)
Q Consensus 326 kg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D 405 (661)
||++|++||+++|.+|..++..++++++++|+||+||++++... .+..+.++||||.|+.++++++++++.|.+|
T Consensus 239 kg~~~~~hp~~~G~~g~~~~~~a~~~l~~aDlvl~iG~~~~~~~-----~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D 313 (576)
T PRK08611 239 KGIIPDDHPYSLGNLGKIGTKPAYEAMQEADLLIMVGTNYPYVD-----YLPKKAKAIQIDTDPANIGKRYPVNVGLVGD 313 (576)
T ss_pred ccccCCCCccccccCCCCCcHHHHHHHHhCCEEEEeCCCCCccc-----cCCCCCcEEEEeCCHHHcCCccCCCeeEecC
Confidence 99999999999999999899889999999999999999975332 1334578999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHH----hhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEEEEcCChhHH
Q 048725 406 LKLALKGINRILGGKDAEGRFDFSAWREELDEQK----VKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQM 481 (661)
Q Consensus 406 ~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~----~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~ 481 (661)
++.+|+.|++.+.... ...|.+.+.+.. .............+++..+++.|++.++++.+++.|+|++..
T Consensus 314 ~~~~l~~L~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~l~~~l~~~~ivv~d~G~~~~ 387 (576)
T PRK08611 314 AKKALHQLTENIKHVE------DRRFLEACQENMAKWWKWMEEDENNASTPIKPERVMAAIQKIADDDAVLSVDVGTVTV 387 (576)
T ss_pred HHHHHHHHHHhccccc------chHHHHHHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHhhhcCCCeEEEEcChHHHH
Confidence 9999999998775321 123544332221 111111111234589999999999999999999999999999
Q ss_pred HHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchh
Q 048725 482 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGM 561 (661)
Q Consensus 482 ~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~ 561 (661)
|..++++...+++|+.+.++|+||||+|+|||++++.|+++||+++|||||+|++|||+|++++++|+++||+||++||+
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDGsf~m~~~eL~Ta~r~~l~~iivV~NN~~~g~ 467 (576)
T PRK08611 388 WSARYLNLGTNQKFIISSWLGTMGCGLPGAIAAKIAFPDRQAIAICGDGGFSMVMQDFVTAVKYKLPIVVVVLNNQQLAF 467 (576)
T ss_pred HHHhcCCcCCCCeEEeCCCchhhhhhHHHHHHHHHhCCCCcEEEEEcccHHhhhHHHHHHHHHhCCCeEEEEEeCCcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCCCcCC
Q 048725 562 VMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLP 640 (661)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~~~~p 640 (661)
+++.|...+. ......+ ..+||.++|++||+++.+|++++||+++|+++++.+||+||||++++.+...|
T Consensus 468 i~~~q~~~~~-~~~~~~~--------~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIeV~vd~~~~~~~ 537 (576)
T PRK08611 468 IKYEQQAAGE-LEYAIDL--------SDMDYAKFAEACGGKGYRVEKAEELDPAFEEALAQDKPVIIDVYVDPNAAPLP 537 (576)
T ss_pred HHHHHHHhcC-CcccccC--------CCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCCcccCCC
Confidence 9776644321 1111111 13799999999999999999999999999999999999999999998775433
No 31
>PRK05858 hypothetical protein; Provisional
Probab=100.00 E-value=2.2e-96 Score=831.50 Aligned_cols=532 Identities=26% Similarity=0.402 Sum_probs=460.1
Q ss_pred CCCCCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhh
Q 048725 84 PDQPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGA 163 (661)
Q Consensus 84 ~~~~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~ 163 (661)
|.+.|+|+|+|++.|+++||++|||+||+++.+|++++.+. +|++|.||||++|+|||+||+|+||+|+||++|+|||+
T Consensus 1 ~~~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~-~i~~i~~rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~ 79 (542)
T PRK05858 1 PAQTGHAGRLAARRLKAHGVDTMFTLSGGHLFPLYDGAREE-GIRLIDVRHEQTAAFAAEAWAKLTRVPGVAVLTAGPGV 79 (542)
T ss_pred CcccCcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhc-CCCEEeeccHHHHHHHHHHHHHhcCCCeEEEEcCCchH
Confidence 45679999999999999999999999999999999999764 59999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEE
Q 048725 164 TNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLI 243 (661)
Q Consensus 164 ~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I 243 (661)
+|+++||++||.+++|||+|+|+.+....+++.+|++||.+++++++||++++.+++++++.+++||+.|+++|+|||||
T Consensus 80 ~n~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l 159 (542)
T PRK05858 80 TNGMSAMAAAQFNQSPLVVLGGRAPALRWGMGSLQEIDHVPFVAPVTKFAATAQSAENAGRLVDQALQAAVTPHRGPVFV 159 (542)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCcccCCCCCCcccchhhhhhhhhceEEEeCCHHHHHHHHHHHHHHHcCCCCCeEEE
Confidence 99999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred EeccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeee
Q 048725 244 DVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVAS 321 (661)
Q Consensus 244 ~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~t 321 (661)
+||.|++.++.... ..+.... .......++++.+++++++|.+||||+|++|+|+. ++.+++++|||++|+||++
T Consensus 160 ~iP~dv~~~~~~~~-~~~~~~~--~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~t 236 (542)
T PRK05858 160 DFPMDHAFSMADDD-GRPGALT--ELPAGPTPDPDALARAAGLLAEAQRPVIMAGTDVWWGHAEAALLRLAEELGIPVLM 236 (542)
T ss_pred EcChhhhhcccccc-ccccccc--cCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCccccChHHHHHHHHHHhCCCEEE
Confidence 99999987765321 0111111 01111235778899999999999999999999985 5789999999999999999
Q ss_pred cCCCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcce
Q 048725 322 TLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVS 401 (661)
Q Consensus 322 t~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~ 401 (661)
|++|||.||++||+++| ..++++++++|+||+||+++++..+.. .+.++.++||||+|+..+++++..++.
T Consensus 237 t~~~kg~~~~~hpl~~~-------~~~~~~l~~aD~vl~vG~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~~~~~~~~ 307 (542)
T PRK05858 237 NGMGRGVVPADHPLAFS-------RARGKALGEADVVLVVGVPMDFRLGFG--VFGGTAQLVHVDDAPPQRAHHRPVAAG 307 (542)
T ss_pred cCCcCCCCCCCCchhhh-------HHHHHHHHhCCEEEEECCCCccccccc--ccCCCCEEEEECCCHHHhcCCCCCceE
Confidence 99999999999999985 345788999999999999987654322 244567999999999999999999999
Q ss_pred EeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCC----CcCCCCCCCChHHHHHHHhhhcCCCcEEEEcCC
Q 048725 402 VCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPL----SFKTFEESIPPQYAIQVLDELTNGEAIISTGVG 477 (661)
Q Consensus 402 i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~----~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G 477 (661)
+.+|++.+|++|.+.+.... ....|.+.+++....... .......++++.++++.|++.++++.+++.|+|
T Consensus 308 i~~d~~~~l~~L~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ivv~d~g 382 (542)
T PRK05858 308 LYGDLSAILSALAGAGGDRT-----DHQGWIEELRTAETAARARDAAELADDRDPIHPMRVYGELAPLLDRDAIVIGDGG 382 (542)
T ss_pred EeCCHHHHHHHHHHhccccc-----CcHHHHHHHHHHHHhhhhhhhhhccCCCCCcCHHHHHHHHHHhcCCCeEEEECCc
Confidence 99999999999998775421 123566655544332211 111223468999999999999999999999999
Q ss_pred hhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCC
Q 048725 478 QHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQ 557 (661)
Q Consensus 478 ~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~ 557 (661)
++..|..++++...|++|+.++++|+|||++|+|||++++.|+|+||+++|||||+|+++||+|+++|++|+++||+||+
T Consensus 383 ~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~la~p~r~vv~i~GDG~f~~~~~eL~Ta~~~~lpi~ivV~NN~ 462 (542)
T PRK05858 383 DFVSYAGRYIDPYRPGCWLDPGPFGCLGTGPGYALAARLARPSRQVVLLQGDGAFGFSLMDVDTLVRHNLPVVSVIGNNG 462 (542)
T ss_pred HHHHHHHHHccccCCCCEEeCCCccccccchhHHHHHHHhCCCCcEEEEEcCchhcCcHHHHHHHHHcCCCEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCCC
Q 048725 558 HLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEH 637 (661)
Q Consensus 558 g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~~ 637 (661)
+|+++++.++..|+.+. ... ....+||.++|++||+++.+|++++||+++|+++++.++|+||||++++++
T Consensus 463 ~y~~~~~~~~~~~~~~~-~~~-------~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIev~~~~~~- 533 (542)
T PRK05858 463 IWGLEKHPMEALYGYDV-AAD-------LRPGTRYDEVVRALGGHGELVTVPAELGPALERAFASGVPYLVNVLTDPSV- 533 (542)
T ss_pred chhhHHHHHHHhcCCcc-ccc-------cCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCcEEEEEEECCCc-
Confidence 99998877665553221 111 111389999999999999999999999999999999999999999999875
Q ss_pred cCCcC
Q 048725 638 VLPMI 642 (661)
Q Consensus 638 ~~p~~ 642 (661)
.+|++
T Consensus 534 ~~~~~ 538 (542)
T PRK05858 534 AYPRR 538 (542)
T ss_pred CCCCC
Confidence 45543
No 32
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=3.1e-96 Score=836.21 Aligned_cols=529 Identities=28% Similarity=0.437 Sum_probs=455.7
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNL 166 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~ 166 (661)
.++++++|++.|+++||+||||+||+++++|+++|.++++|++|.+|||++|+||||||+|+||+|+||++|+|||++|+
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~ 81 (574)
T PRK09124 2 KQTVADYIAKTLEQAGVKRIWGVTGDSLNGLSDSLRRMGTIEWMHTRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHL 81 (574)
T ss_pred CccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhccCCCcEEEeCcHHHHHHHHHHHHHhhCCcEEEEECCCCCHHHH
Confidence 37899999999999999999999999999999999876679999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEec
Q 048725 167 VSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVP 246 (661)
Q Consensus 167 l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP 246 (661)
++||++|+.+++|||+|+|+++....+++.+|++||.++++++|||++++.+++++++.+++|++.|+++ +|||||+||
T Consensus 82 ~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~Q~~d~~~l~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~-~gPV~l~iP 160 (574)
T PRK09124 82 INGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSNPEQLPRVLAIAMRKAILN-RGVAVVVLP 160 (574)
T ss_pred HHHHHHHhhcCCCEEEEecCCccccCCCCCccccChhhhcccceeeeEEeCCHHHHHHHHHHHHHHHhcC-CCCEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999985 599999999
Q ss_pred cchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCccchHHHHHHHHHHhCCCeeecCCCC
Q 048725 247 KDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGL 326 (661)
Q Consensus 247 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~~a~~~l~~lae~lg~PV~tt~~gk 326 (661)
.|++.+++.... ....... ......++++.+++++++|.+||||+|++|+|+.++.+++.+|+|++|+||++|++||
T Consensus 161 ~Dv~~~~~~~~~-~~~~~~~--~~~~~~~~~~~i~~~~~~L~~AkrPvii~G~g~~~a~~~l~~lae~l~~PV~tt~~gk 237 (574)
T PRK09124 161 GDVALKPAPERA-TPHWYHA--PQPVVTPAEEELRKLAALLNGSSNITLLCGSGCAGAHDELVALAETLKAPIVHALRGK 237 (574)
T ss_pred hhhhhCcccccc-ccccccC--CCCCCCCCHHHHHHHHHHHHcCCCCEEEECcChHhHHHHHHHHHHHhCCceEEccccc
Confidence 999887653210 0000100 0111124677899999999999999999999987788999999999999999999999
Q ss_pred CCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcceEeccH
Q 048725 327 GSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADL 406 (661)
Q Consensus 327 g~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~ 406 (661)
|+||++||+++|++|..++..+++++++||+||+||++++... .+.+..++||||.|+.++++++.+++.+.+|+
T Consensus 238 g~~~~~hp~~~G~~G~~~~~~~~~~~~~aDlvl~lG~~~~~~~-----~~~~~~~ii~id~d~~~~~~~~~~~~~i~~D~ 312 (574)
T PRK09124 238 EHVEYDNPYDVGMTGLIGFSSGYHAMMNCDTLLMLGTDFPYRQ-----FYPTDAKIIQIDINPGSLGRRSPVDLGLVGDV 312 (574)
T ss_pred ccCCCCCcccccCCccCCCHHHHHHHHhCCEEEEECCCCCccc-----ccCCCCcEEEeeCCHHHhCCCCCCCeEEEccH
Confidence 9999999999999999888888899999999999999985431 13345789999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcHHHHHHHHH----HHhhCCC--CcCCCCCCCChHHHHHHHhhhcCCCcEEEEcCChhH
Q 048725 407 KLALKGINRILGGKDAEGRFDFSAWREELDE----QKVKYPL--SFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQ 480 (661)
Q Consensus 407 ~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~----~~~~~~~--~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~ 480 (661)
+.+|++|.+.+.... ...|.+.+.+ ....... ........+++..+++.|++.++++.+++.|+|++.
T Consensus 313 ~~~l~~L~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ivv~d~g~~~ 386 (574)
T PRK09124 313 KATLAALLPLLEEKT------DRKFLDKALEHYRKARKGLDDLAVPSDGGKPIHPQYLARQISEFAADDAIFTCDVGTPT 386 (574)
T ss_pred HHHHHHHHHhhhccC------ChHHHHHHHHHHHHHHHhhhhhhcccCCCCcCCHHHHHHHHHhhcCCCcEEEEcCCHHH
Confidence 999999988775321 1234433222 1111100 001122458999999999999999999999999999
Q ss_pred HHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcch
Q 048725 481 MWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLG 560 (661)
Q Consensus 481 ~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g 560 (661)
.|..+++...++++|+++.++|+|||++|+|||+++++|+++||+|+|||||+|++|||+|+++|++|+++||+||++||
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~G~mG~~lpaAiGa~la~p~r~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g 466 (574)
T PRK09124 387 VWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAQAAHPGRQVVALSGDGGFSMLMGDFLSLVQLKLPVKIVVFNNSVLG 466 (574)
T ss_pred HHHHHhcccCCCCeEEecCCcccccchHHHHHHHHHhCCCCeEEEEecCcHHhccHHHHHHHHHhCCCeEEEEEeCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCCCcC
Q 048725 561 MVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVL 639 (661)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~~~~ 639 (661)
++++.+... +.. ..++ +...+||.++|++||+++.+|++++||+++|+++++.+||+||||++++++..+
T Consensus 467 ~i~~~~~~~-~~~----~~~~----~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIev~i~~~~~~~ 536 (574)
T PRK09124 467 FVAMEMKAG-GYL----TDGT----DLHNPDFAAIAEACGITGIRVEKASELDGALQRAFAHDGPALVDVVTAKQELAM 536 (574)
T ss_pred cHHHHHHhc-CCc----cccC----cCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEecCcccCC
Confidence 997655321 110 1111 111379999999999999999999999999999999999999999999877543
No 33
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=2.7e-96 Score=834.95 Aligned_cols=524 Identities=27% Similarity=0.430 Sum_probs=455.5
Q ss_pred CcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 048725 88 RKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLV 167 (661)
Q Consensus 88 ~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l 167 (661)
++++++|++.|+++||+||||+||+++++|+++|.++++|++|.||||++|+||||||+|+||||+||++|+|||++|++
T Consensus 3 ~t~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N~~ 82 (578)
T PRK06546 3 KTVAEQLVEQLVAAGVKRIYGIVGDSLNPIVDAVRRTGGIEWVHVRHEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLHLI 82 (578)
T ss_pred ccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhccCCCeEEEeCcHHHHHHHHHhHHHhhCCceEEEECCCCcHHHHH
Confidence 68999999999999999999999999999999998876799999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 048725 168 SGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPK 247 (661)
Q Consensus 168 ~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~ 247 (661)
+|+++||.+++|||+|+|+.+....+++.+|++|+.++++++|||+++|.+++++++.+++|++.|++ ++|||||+||.
T Consensus 83 ~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~Qe~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~lP~ 161 (578)
T PRK06546 83 NGLYDAHRSGAPVLAIASHIPSAQIGSGFFQETHPDRLFVECSGYCEMVSSAEQAPRVLHSAIQHAVA-GGGVSVVTLPG 161 (578)
T ss_pred HHHHHHHhcCCCEEEEeCCCCccccCCCCccccChhhhcccceeeEeEeCCHHHHHHHHHHHHHHHhc-CCCCEEEEcCh
Confidence 99999999999999999999999899999999999999999999999999999999999999999996 56999999999
Q ss_pred chhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCccchHHHHHHHHHHhCCCeeecCCCCC
Q 048725 248 DIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLG 327 (661)
Q Consensus 248 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~~a~~~l~~lae~lg~PV~tt~~gkg 327 (661)
|++.++..... .+.... .......++++.+++++++|++||||+|++|+|+.++.+++.+|+|++|+||++|++|||
T Consensus 162 Dv~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~~a~~~L~~A~rPvii~G~g~~~a~~~l~~lae~~g~Pv~~t~~gkg 238 (578)
T PRK06546 162 DIADEPAPEGF-APSVIS--PRRPTVVPDPAEVRALADAINEAKKVTLFAGAGVRGAHAEVLALAEKIKAPVGHSLRGKE 238 (578)
T ss_pred hhhhccccccc-cccccc--cCCCCCCCCHHHHHHHHHHHHcCCCcEEEECcchHHHHHHHHHHHHHhCcceEECccccc
Confidence 99877653211 000000 011112357788999999999999999999999988889999999999999999999999
Q ss_pred CCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcceEeccHH
Q 048725 328 SFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLK 407 (661)
Q Consensus 328 ~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~ 407 (661)
+||++||+++|+.|..++..+++++++|||||++|++++.. .|.++.++||||.|+.++++++..++.+.+|++
T Consensus 239 ~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~lG~~~~~~------~~~~~~~~I~vd~d~~~~~~~~~~~~~i~~D~~ 312 (578)
T PRK06546 239 WIQYDNPFDVGMSGLLGYGAAHEAMHEADLLILLGTDFPYD------QFLPDVRTAQVDIDPEHLGRRTRVDLAVHGDVA 312 (578)
T ss_pred CCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEEcCCCChh------hcCCCCcEEEEeCCHHHhCCCCCCCeEEEcCHH
Confidence 99999999999999999999999999999999999997531 234557899999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhh----CCCCc---CCCCCCCChHHHHHHHhhhcCCCcEEEEcCChhH
Q 048725 408 LALKGINRILGGKDAEGRFDFSAWREELDEQKVK----YPLSF---KTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQ 480 (661)
Q Consensus 408 ~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~----~~~~~---~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~ 480 (661)
.+|++|++.|.... ...|.+.+.+.... ..... .....++++..+++.|++.++++.+++.|+|++.
T Consensus 313 ~~l~~L~~~L~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ivv~d~G~~~ 386 (578)
T PRK06546 313 ETIRALLPLVKEKT------DRRFLDRMLKKHARKLEKVVGAYTRKVEKHTPIHPEYVASILDELAADDAVFTVDTGMCN 386 (578)
T ss_pred HHHHHHHHhhcccC------ChHHHHHHHHHHHHHHhhhhhhhccccCCCCCcCHHHHHHHHHHhccCCcEEEECCcHHH
Confidence 99999999886421 12354433221111 00000 1122458999999999999999999999999999
Q ss_pred HHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcch
Q 048725 481 MWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLG 560 (661)
Q Consensus 481 ~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g 560 (661)
.|..+++...++++++.+.++|+|||++|+|||+++++|+++||+|+|||||+|+++||+|++++++|+++||+||++|+
T Consensus 387 ~~~~~~~~~~~~~~~~~s~~~gsmG~~~paAiGa~la~p~~~vv~i~GDGsf~~~~~el~Ta~~~~lpv~~vV~NN~~~g 466 (578)
T PRK06546 387 VWAARYITPNGRRRVIGSFRHGSMANALPHAIGAQLADPGRQVISMSGDGGLSMLLGELLTVKLYDLPVKVVVFNNSTLG 466 (578)
T ss_pred HHHHHhcCCCCCceEEccCCcccccchhHHHHHHHHhCCCCcEEEEEcCchHhhhHHHHHHHHHhCCCeEEEEEECCccc
Confidence 99999999888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCC
Q 048725 561 MVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQE 636 (661)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~ 636 (661)
++++.|...+ .. .++. ....+||.++|++||+++.+|++++||+++|+++++.+||+||||++++.+
T Consensus 467 ~i~~~q~~~~-~~----~~~~----~~~~~df~~lA~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIev~~~~~~ 533 (578)
T PRK06546 467 MVKLEMLVDG-LP----DFGT----DHPPVDYAAIAAALGIHAVRVEDPKDVRGALREAFAHPGPALVDVVTDPNA 533 (578)
T ss_pred cHHHHHHhcC-CC----cccc----cCCCCCHHHHHHHCCCeeEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCCCc
Confidence 9975553321 11 1111 111379999999999999999999999999999999999999999999776
No 34
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=100.00 E-value=8.3e-96 Score=829.88 Aligned_cols=528 Identities=31% Similarity=0.520 Sum_probs=459.7
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNL 166 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~ 166 (661)
.++++|+|++.|+++||++|||+||+++++|+++|.++++|++|.|+||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 7 ~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~ 86 (557)
T PRK08199 7 ARTGGQILVDALRANGVERVFCVPGESYLAVLDALHDETDIRVIVCRQEGGAAMMAEAYGKLTGRPGICFVTRGPGATNA 86 (557)
T ss_pred cCcHHHHHHHHHHHcCCCEEEeCCCcchhHHHHHhhccCCCcEEEeccHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHH
Confidence 47899999999999999999999999999999999887679999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEec
Q 048725 167 VSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVP 246 (661)
Q Consensus 167 l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP 246 (661)
++||++||.+++|||+|+|+++....+++.+|++||.++++++|||++++.+++++++.++|||+.|.++|+|||||+||
T Consensus 87 ~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP 166 (557)
T PRK08199 87 SIGVHTAFQDSTPMILFVGQVARDFREREAFQEIDYRRMFGPMAKWVAEIDDAARIPELVSRAFHVATSGRPGPVVLALP 166 (557)
T ss_pred HHHHHHHhhcCCCEEEEecCCccccCCCCcccccCHHHhhhhhhceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeecCC
Q 048725 247 KDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTLM 324 (661)
Q Consensus 247 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt~~ 324 (661)
.|++.++.... .. ..+ ......++++.+++++++|.+||||+|++|+|+. ++.+++++|+|++|+||++|++
T Consensus 167 ~dl~~~~~~~~--~~---~~~-~~~~~~~~~~~i~~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pV~tt~~ 240 (557)
T PRK08199 167 EDVLSETAEVP--DA---PPY-RRVAAAPGAADLARLAELLARAERPLVILGGSGWTEAAVADLRAFAERWGLPVACAFR 240 (557)
T ss_pred HhHhhCccccc--cc---CCc-CCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcCchhHHHHHHHHHHHhCCCEEEcCC
Confidence 99987654211 00 011 1112235678899999999999999999999985 5689999999999999999999
Q ss_pred CCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccC---CCCeEEEEcCCchhhccCCCCcce
Q 048725 325 GLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFA---SRAKIVHIDIDSAEIGKNKQPHVS 401 (661)
Q Consensus 325 gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~---~~~~vi~Id~d~~~i~~~~~~~~~ 401 (661)
|||++|++||+++|.+|..++..+++++++||+||++|++++++.+..+..+. +..++||||.|+.++++++..++.
T Consensus 241 ~kg~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~vd~d~~~~~~~~~~~~~ 320 (557)
T PRK08199 241 RQDLFDNRHPNYAGDLGLGINPALAARIREADLVLAVGTRLGEVTTQGYTLLDIPVPRQTLVHVHPDAEELGRVYRPDLA 320 (557)
T ss_pred cCCCCCCCChhhccCCcCcCCHHHHHHHHhCCEEEEeCCCCccccccccccccccCCCCeEEEEeCCHHHhCCccCCCeE
Confidence 99999999999999999888888999999999999999999888765443332 457899999999999999999999
Q ss_pred EeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCC--CcCCCCCCCChHHHHHHHhhhcCCCcEEEEcCChh
Q 048725 402 VCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPL--SFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQH 479 (661)
Q Consensus 402 i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~--~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~ 479 (661)
|.+|++.+|++|++.+... ...|.+.+...+..... .......++++..+++.|++.++++.+++.|+|++
T Consensus 321 i~~D~~~~l~~L~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ii~~d~g~~ 393 (557)
T PRK08199 321 IVADPAAFAAALAALEPPA-------SPAWAEWTAAAHADYLAWSAPLPGPGAVQLGEVMAWLRERLPADAIITNGAGNY 393 (557)
T ss_pred EecCHHHHHHHHHhccccc-------chhHHHHHHHHHHHHHhhccccCCCCCcCHHHHHHHHHHhCCCCeEEEECChHH
Confidence 9999999999998754321 13454443332221110 00111235889999999999999999999999999
Q ss_pred HHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcc
Q 048725 480 QMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHL 559 (661)
Q Consensus 480 ~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~ 559 (661)
..|..++++...++.++.+ ++|+|||++|+|||+++++|+++||+|+|||||+|+++||+|++++++|+++||+||++|
T Consensus 394 ~~~~~~~~~~~~~~~~~~~-~~g~mG~glpaaiGa~la~p~~~vv~i~GDGsf~~~~~el~ta~~~~l~i~~vv~nN~~~ 472 (557)
T PRK08199 394 ATWLHRFFRFRRYRTQLAP-TSGSMGYGLPAAIAAKLLFPERTVVAFAGDGCFLMNGQELATAVQYGLPIIVIVVNNGMY 472 (557)
T ss_pred HHHHHHhcCcCCCCeEECC-CCccccchHHHHHHHHHhCCCCcEEEEEcchHhhccHHHHHHHHHhCCCeEEEEEeCCcc
Confidence 9999999999888888865 459999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCC
Q 048725 560 GMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQE 636 (661)
Q Consensus 560 g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~ 636 (661)
++++..|+..|........+. .+||.++|++||+++.+|++++||+++|+++++.+||.||||++++++
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~--------~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~gp~li~v~~~~~~ 541 (557)
T PRK08199 473 GTIRMHQEREYPGRVSGTDLT--------NPDFAALARAYGGHGETVERTEDFAPAFERALASGKPALIEIRIDPEA 541 (557)
T ss_pred hHHHHHHHHhcCCccccccCC--------CCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCHHH
Confidence 999887766553321111111 279999999999999999999999999999999999999999998765
No 35
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=5.5e-96 Score=829.41 Aligned_cols=518 Identities=30% Similarity=0.492 Sum_probs=446.9
Q ss_pred CcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 048725 88 RKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLV 167 (661)
Q Consensus 88 ~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l 167 (661)
++++++|++.|+++||++|||+||+++++|+++|.+. +|++|.++||++|+||||||+|+||||+||++|+|||++|++
T Consensus 2 ~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~-~i~~v~~~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~l 80 (549)
T PRK06457 2 PSVAEVIIRVLEDNGIQRIYGIPGDSIDPLVDAIRKS-KVKYVQVRHEEGAALAASVEAKITGKPSACMGTSGPGSIHLL 80 (549)
T ss_pred CcHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHhc-CCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhhH
Confidence 4899999999999999999999999999999999875 499999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 048725 168 SGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPK 247 (661)
Q Consensus 168 ~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~ 247 (661)
+|+++||.+++|||+|+|+++....+++.+|++|+.++++++|||++++.+++++++.+++||+.|+++ +|||||+||.
T Consensus 81 ~~l~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~-~GPV~l~iP~ 159 (549)
T PRK06457 81 NGLYDAKMDHAPVIALTGQVESDMIGHDYFQEVNLTKLFDDVAVFNQILINPENAEYIIRRAIREAISK-RGVAHINLPV 159 (549)
T ss_pred HHHHHHHhcCCCEEEEecCCCccccCCCcccccchhhhhccceeEEEEeCCHHHHHHHHHHHHHHHhcC-CCCEEEEeCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999996 4999999999
Q ss_pred chhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCccchHHHHHHHHHHhCCCeeecCCCCC
Q 048725 248 DIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLG 327 (661)
Q Consensus 248 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~~a~~~l~~lae~lg~PV~tt~~gkg 327 (661)
|++.+.... .. .... ..+.+.....+++++++|++||||+|++|+|+.++.+++.+|||++|+||++|++|||
T Consensus 160 Dv~~~~~~~--~~--~~~~---~~~~~~~~~~i~~~~~~L~~AkrPvii~G~g~~~a~~~l~~lAe~~~~PV~tt~~gkg 232 (549)
T PRK06457 160 DILRKSSEY--KG--SKNT---EVGKVKYSIDFSRAKELIKESEKPVLLIGGGTRGLGKEINRFAEKIGAPIIYTLNGKG 232 (549)
T ss_pred hHhhccccc--cc--cccc---CCCCCCCHHHHHHHHHHHHcCCCcEEEECcchhhHHHHHHHHHHHHCCCEEEcccccc
Confidence 998765321 11 0000 0111122357899999999999999999999988889999999999999999999999
Q ss_pred CCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcceEeccHH
Q 048725 328 SFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLK 407 (661)
Q Consensus 328 ~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~ 407 (661)
+||++||+++|++|..++..+++++++||+||++|+++++.. .+.++.++||||.|+.++++++..++.+.+|++
T Consensus 233 ~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~~~~~~-----~~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~ 307 (549)
T PRK06457 233 ILPDLDPKVMGGIGLLGTKPSIEAMDKADLLIMLGTSFPYVN-----FLNKSAKVIQVDIDNSNIGKRLDVDLSYPIPVA 307 (549)
T ss_pred cCCCCChhhccCCCCCCCHHHHHHHHhCCEEEEECCCCChhh-----cCCCCCcEEEEeCCHHHhCCCCCCCeEEecCHH
Confidence 999999999999999899889999999999999999986432 123357899999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCC----CCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEEEEcCChhHHHH
Q 048725 408 LALKGINRILGGKDAEGR----FDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWA 483 (661)
Q Consensus 408 ~~L~~L~~~l~~~~~~~~----~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~~~ 483 (661)
.+|+.+... ...... .....|.+++.+... ....++++.++++.|++.++++.+++.|+|++.+|.
T Consensus 308 ~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~l~~~l~~~~iiv~d~g~~~~~~ 377 (549)
T PRK06457 308 EFLNIDIEE---KSDKFYEELKGKKEDWLDSISKQEN-------SLDKPMKPQRVAYIVSQKCKKDAVIVTDTGNVTMWT 377 (549)
T ss_pred HHHHHHhhc---ccchhHHHHHHHHHHHHHHHHHhhc-------CCCCCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHH
Confidence 999643321 110000 012234443332211 122358899999999999999999999999999999
Q ss_pred HhhccccCCCeEEecCCCCcccchHHHHHHhhhhCC-CCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchhH
Q 048725 484 AQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANP-DAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMV 562 (661)
Q Consensus 484 ~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p-~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~ 562 (661)
.++++...+++++++.++|+|||++|+|||+++++| +++||+++|||||+|++|||+|++++++|+++||+||++|+++
T Consensus 378 ~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~~Vv~i~GDGsf~~~~~eL~Ta~~~~lpi~ivV~NN~~~g~i 457 (549)
T PRK06457 378 ARHFRASGEQTFIFSAWLGSMGIGVPGSVGASFAVENKRQVISFVGDGGFTMTMMELITAKKYDLPVKIIIYNNSKLGMI 457 (549)
T ss_pred HHhCCCCCCCeEEeCCCcchhhhhHHHHHHHHhcCCCCCeEEEEEcccHHhhhHHHHHHHHHHCCCeEEEEEECCccchH
Confidence 999998899999999999999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCCCc
Q 048725 563 MQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHV 638 (661)
Q Consensus 563 ~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~~~ 638 (661)
++.|+.+ +.......+ ..+||.++|++||+++.+|++++||+++|+++++.+||+||||++++++..
T Consensus 458 ~~~q~~~-~~~~~~~~~--------~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIeV~i~~~~~~ 524 (549)
T PRK06457 458 KFEQEVM-GYPEWGVDL--------YNPDFTKIAESIGFKGFRLEEPKEAEEIIEEFLNTKGPAVLDAIVDPNERP 524 (549)
T ss_pred HHHHHHh-cCCcccccC--------CCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCccccC
Confidence 8766443 211111111 137999999999999999999999999999999999999999999977643
No 36
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=100.00 E-value=1.4e-95 Score=829.19 Aligned_cols=528 Identities=26% Similarity=0.396 Sum_probs=452.8
Q ss_pred HHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCC-CCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHH
Q 048725 90 GADILVEALERQGVTDVFAYPGGASMEIHQALTRSN-NIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVS 168 (661)
Q Consensus 90 gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~-~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~ 168 (661)
++|+|++.|+++||+||||+||+++++|+++|.+++ +|++|.||||++|+||||||+|+||||+||++|+|||++|+++
T Consensus 1 ~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~~i~~v~~rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~ 80 (575)
T TIGR02720 1 ASAAVLKVLEAWGVDHIYGIPGGSFNSTMDALSAERDRIHYIQVRHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLN 80 (575)
T ss_pred CHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhcCCCCcEEEeccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHH
Confidence 579999999999999999999999999999998753 5999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 169 GLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 169 gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
|+++||.+++|||+|+|+.+....+.+.+|++|+..+++++|||++++.+++++++.+++|++.|.+ ++|||||+||.|
T Consensus 81 ~i~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~id~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~iP~D 159 (575)
T TIGR02720 81 GLYDAKEDHVPVLALVGQVPTTGMNMDTFQEMNENPIYADVAVYNRTAMTAESLPHVIDEAIRRAYA-HNGVAVVTIPVD 159 (575)
T ss_pred HHHHHhhcCCCEEEEecCCccccCCCCCcceechhhhhhhcceEEEEeCCHHHHHHHHHHHHHHHhh-CCCCEEEEECcc
Confidence 9999999999999999999998889999999999999999999999999999999999999999999 569999999999
Q ss_pred hhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCccchHHHHHHHHHHhCCCeeecCCCCCC
Q 048725 249 IQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLGS 328 (661)
Q Consensus 249 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~~a~~~l~~lae~lg~PV~tt~~gkg~ 328 (661)
++.++........... .........++++.+++++++|++||||+|++|+|+.++.+++.+|||++|+||+||++|||+
T Consensus 160 v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~L~~AkrPvil~G~g~~~a~~~l~~lae~l~~PV~tt~~gkg~ 238 (575)
T TIGR02720 160 FGWQEIPDNDYYASSV-SYQTPLLPAPDVEAVTRAVQTLKAAERPVIYYGIGARKAGEELEALSEKLKIPLISTGLAKGI 238 (575)
T ss_pred hhhccccccccccccc-cccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECcchhhHHHHHHHHHHHhCCCEEEccccccc
Confidence 9876543210000001 000011224578899999999999999999999999988899999999999999999999999
Q ss_pred CCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcceEeccHHH
Q 048725 329 FPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKL 408 (661)
Q Consensus 329 ~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~~ 408 (661)
||++||+++|++|..++..+++++++||+||++|++++...+. ..+....++||||.|+.++++++.+++.|.+|++.
T Consensus 239 ~~~~hpl~~G~~g~~~~~~~~~~l~~aDlvl~vG~~~~~~~~~--~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~ 316 (575)
T TIGR02720 239 IEDRYPAYLGSAYRVAQKPANEALFQADLVLFVGNNYPFAEVS--KAFKNTKYFIQIDIDPAKLGKRHHTDIAVLADAKK 316 (575)
T ss_pred CCCCCcccccCCcCCCcHHHHHHHHhCCEEEEeCCCCCccccc--cccCCCceEEEEeCCHHHhCCCCCCCeEEecCHHH
Confidence 9999999999999888888999999999999999998644331 12333455699999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCcHHHHHHHHH----HHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEEEEcCChhHHHHH
Q 048725 409 ALKGINRILGGKDAEGRFDFSAWREELDE----QKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAA 484 (661)
Q Consensus 409 ~L~~L~~~l~~~~~~~~~~~~~w~~~l~~----~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~~~~ 484 (661)
+|++|++.+.... ...|.+.+.. ..+...........++++..+++.|++.+++|.|++.|+|++..|..
T Consensus 317 ~l~~L~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~ii~~D~g~~~~~~~ 390 (575)
T TIGR02720 317 ALAAILAQVEPRE------STPWWQANVANVKNWRAYLASLEDKTEGPLQAYQVYRAINKIAEDDAIYSIDVGDININSN 390 (575)
T ss_pred HHHHHHHhccccC------ChHHHHHHHHHHHHHHHHhhhhhccCCCCcCHHHHHHHHHHhCCCCcEEEeCCcHHHHHHH
Confidence 9999998875421 1124322211 11111000011234589999999999999999999999999999999
Q ss_pred hhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHH
Q 048725 485 QFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQ 564 (661)
Q Consensus 485 ~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~ 564 (661)
++++...|++|+++.++|+|||++|+|||+++++|+++||+++|||||+|++|||+|++++++|+++||+||++||++++
T Consensus 391 ~~~~~~~~~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i~GDGsf~m~~~eL~Tavr~~lpi~~VV~NN~~yg~i~~ 470 (575)
T TIGR02720 391 RHLKMTPKNKWITSNLFATMGVGVPGAIAAKLNYPDRQVFNLAGDGAFSMTMQDLLTQVQYHLPVINIVFSNCTYGFIKD 470 (575)
T ss_pred HhCCcCCCCeEEcCCCcchhhchHHHHHHHHHhCCCCcEEEEEcccHHHhhHHHHHHHHHhCCCeEEEEEeCCccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHH--hCCCcEEEEEEeCCCC
Q 048725 565 WEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTML--DTPGPYLLDVIFPHQE 636 (661)
Q Consensus 565 ~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~--~~~gp~lIeV~~~~~~ 636 (661)
.|... ........+ ..+||.++|++||+++.+|++.+||+++|++++ +.++|+||||++++++
T Consensus 471 ~~~~~-~~~~~~~~~--------~~~df~~iA~a~G~~~~~v~~~~el~~al~~a~~~~~~~p~liev~i~~~~ 535 (575)
T TIGR02720 471 EQEDT-NQPLIGVDF--------NDADFAKIAEGVGAVGFRVNKIEQLPAVFEQAKAIKQGKPVLIDAKITGDR 535 (575)
T ss_pred HHHHh-CCCcccccC--------CCCCHHHHHHHCCCEEEEeCCHHHHHHHHHHHHhhCCCCcEEEEEEeCCCC
Confidence 66332 111111111 137999999999999999999999999999999 7899999999999876
No 37
>PRK06154 hypothetical protein; Provisional
Probab=100.00 E-value=3.6e-95 Score=822.89 Aligned_cols=531 Identities=27% Similarity=0.409 Sum_probs=452.7
Q ss_pred CCCCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHh--CCcEEEEEccchh
Q 048725 85 DQPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS--GKPGICIATSGPG 162 (661)
Q Consensus 85 ~~~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~t--g~~gv~~~tsGpG 162 (661)
.+.++++|+|++.|+++||++|||+|| .+|+++|.+ .+|++|.||||++|+||||||+|+| |+++||++|+|||
T Consensus 17 ~~~~~~a~~l~~~L~~~GV~~vFGip~---~~l~dal~~-~~i~~i~~rhE~~A~~mAdgyar~t~g~~~gv~~~t~GPG 92 (565)
T PRK06154 17 AKTMKVAEAVAEILKEEGVELLFGFPV---NELFDAAAA-AGIRPVIARTERVAVHMADGYARATSGERVGVFAVQYGPG 92 (565)
T ss_pred cCcccHHHHHHHHHHHcCCCEEEeCcC---HHHHHHHHh-cCCeEEeeCcHHHHHHHHHHHHHhcCCCCCEEEEECCCcc
Confidence 445799999999999999999999995 589999976 4699999999999999999999999 4999999999999
Q ss_pred hHHHHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEE
Q 048725 163 ATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVL 242 (661)
Q Consensus 163 ~~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~ 242 (661)
++|+++||++||.+++|||+|+|+.+....+.+ +.+|+.++++++|||+.++.+++++++.+++||+.|+++|+||||
T Consensus 93 ~~N~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~--~~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~s~~~GPV~ 170 (565)
T PRK06154 93 AENAFGGVAQAYGDSVPVLFLPTGYPRGSTDVA--PNFESLRNYRHITKWCEQVTLPDEVPELMRRAFTRLRNGRPGPVV 170 (565)
T ss_pred HHHHHHHHHHHhhcCCCEEEEeCCCCcccccCC--CCcchhhhHhhcceeEEECCCHHHHHHHHHHHHHHHhcCCCceEE
Confidence 999999999999999999999999987765543 347888999999999999999999999999999999999999999
Q ss_pred EEeccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCee
Q 048725 243 IDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVA 320 (661)
Q Consensus 243 I~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~ 320 (661)
|+||.|++.+++... +.+. .+. ......++++.+++++++|.+||||+|++|+|+. ++.+++.+|||++|+||+
T Consensus 171 l~iP~Dv~~~~~~~~-~~~~-~~~--~~~~~~~~~~~i~~aa~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~l~~PV~ 246 (565)
T PRK06154 171 LELPVDVLAEELDEL-PLDH-RPS--RRSRPGADPVEVVEAAALLLAAERPVIYAGQGVLYAQATPELKELAELLEIPVM 246 (565)
T ss_pred EecchHHhhhhcccc-cccc-cCC--CCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEE
Confidence 999999987765310 0000 000 1111245778899999999999999999999996 678999999999999999
Q ss_pred ecCCCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcc
Q 048725 321 STLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHV 400 (661)
Q Consensus 321 tt~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~ 400 (661)
+|++|||+||++||+++|+.|..+...+++++++||+||+||++++++.++ + .+.++.++||||+|+.++++++++++
T Consensus 247 tt~~gkg~~~~~hpl~~G~~g~~~~~~~~~~~~~aDlvL~lG~~l~~~~~~-~-~~~~~~~vI~id~d~~~~~~~~~~~~ 324 (565)
T PRK06154 247 TTLNGKSAFPEDHPLALGSGGRARPATVAHFLREADVLFGIGCSLTRSYYG-L-PMPEGKTIIHSTLDDADLNKDYPIDH 324 (565)
T ss_pred ECCCcccCCCCCCccccCCCCCCCcHHHHHHHHhCCEEEEECCCCcccccC-c-cCCCCCeEEEEECCHHHhccccCCCe
Confidence 999999999999999999988888888899999999999999999876443 2 25567899999999999999999999
Q ss_pred eEeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCC----CCcCCCCCCCChHHHHHHHhhhcC-CCcEEEEc
Q 048725 401 SVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYP----LSFKTFEESIPPQYAIQVLDELTN-GEAIISTG 475 (661)
Q Consensus 401 ~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~----~~~~~~~~~i~~~~~~~~l~~~l~-~d~iv~~d 475 (661)
.+.+|++.+|++|.+.+..+..........|.+++...+.... ........++++..+++.|++.++ +|.|++.|
T Consensus 325 ~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~l~~~l~~~d~iv~~D 404 (565)
T PRK06154 325 GLVGDAALVLKQMIEELRRRVGPDRGRAQQVAAEIEAVRAAWLAKWMPKLTSDSTPINPYRVVWELQHAVDIKTVIITHD 404 (565)
T ss_pred eEEcCHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHhHHhhhhhccCCCCCcCHHHHHHHHHHhcCCCCEEEEEC
Confidence 9999999999999998864321111123457665544432211 111122346999999999999996 58999999
Q ss_pred CChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEe
Q 048725 476 VGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLN 555 (661)
Q Consensus 476 ~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~N 555 (661)
+|++..|..++++...|++|++++++|+|||++|+|||+++|+|+++||+++|||||+|++|||+|++|+|+|+++||+|
T Consensus 405 ~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la~p~r~Vv~i~GDG~f~m~~~EL~Ta~r~~lpi~~vV~N 484 (565)
T PRK06154 405 AGSPRDQLSPFYVASRPGSYLGWGKTTQLGYGLGLAMGAKLARPDALVINLWGDAAFGMTGMDFETAVRERIPILTILLN 484 (565)
T ss_pred CcccHHHHHHhCCCCCCCeEEccCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhccHHHHHHHHHhCCCeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh---CCCcEEEEEEe
Q 048725 556 NQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD---TPGPYLLDVIF 632 (661)
Q Consensus 556 N~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~---~~gp~lIeV~~ 632 (661)
|++||++++.+...+. + +.+. +..+||.++|++||+++.+|++.+||+++|+++++ .++|+||||++
T Consensus 485 N~~yg~~~~~~~~~~~-~----~~~~-----~~~~df~~lA~a~G~~g~~V~~~~el~~al~~a~~~~~~~~p~lIev~v 554 (565)
T PRK06154 485 NFSMGGYDKVMPVSTT-K----YRAT-----DISGDYAAIARALGGYGERVEDPEMLVPALLRALRKVKEGTPALLEVIT 554 (565)
T ss_pred CCccceeehhhhhhcC-c----cccc-----CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhhccCCCeEEEEEEe
Confidence 9999998766543221 1 1111 11279999999999999999999999999999996 68899999999
Q ss_pred CCCCC
Q 048725 633 PHQEH 637 (661)
Q Consensus 633 ~~~~~ 637 (661)
+++..
T Consensus 555 ~~~~~ 559 (565)
T PRK06154 555 SEETA 559 (565)
T ss_pred ChHHh
Confidence 98763
No 38
>PRK07064 hypothetical protein; Provisional
Probab=100.00 E-value=4.9e-95 Score=822.70 Aligned_cols=530 Identities=26% Similarity=0.397 Sum_probs=455.3
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNL 166 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~ 166 (661)
.++++++|++.|+++||++|||+||+++++|+++|.++++|++|.|+||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 2 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~ 81 (544)
T PRK07064 2 KVTVGELIAAFLEQCGVKTAFGVISIHNMPILDAIGRRGKIRFVPARGEAGAVNMADAHARVSGGLGVALTSTGTGAGNA 81 (544)
T ss_pred CccHHHHHHHHHHHcCCCEEEeCCCCcchHHHHHHhccCCccEEeeccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHHH
Confidence 46899999999999999999999999999999999876679999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCCcccCCC--CCCC-CCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEE
Q 048725 167 VSGLADALLDSVPLVAITGQVPRRMIGTD--AFQE-TPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLI 243 (661)
Q Consensus 167 l~gl~~A~~~~iPll~ItG~~p~~~~g~~--~~q~-~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I 243 (661)
++||++||.+++|||+|+|++++...+++ .+|+ +||.++++++|||++++.+++++++.+++||+.|.++++|||||
T Consensus 82 ~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l 161 (544)
T PRK07064 82 AGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLRAVSKAAFRVRSAETALATIREAVRVALTAPTGPVSV 161 (544)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhhhhcceEEEeCCHHHHHHHHHHHHHHhccCCCCcEEE
Confidence 99999999999999999999998877765 3565 59999999999999999999999999999999999999999999
Q ss_pred EeccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCccchHHHHHHHHHHhCCCeeecC
Q 048725 244 DVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTL 323 (661)
Q Consensus 244 ~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~~a~~~l~~lae~lg~PV~tt~ 323 (661)
+||.|++.++..... ... + .......++++.+++++++|.+||||+|++|+|+.++.+++.+|+| +|+||++|+
T Consensus 162 ~iP~dv~~~~~~~~~--~~~-~--~~~~~~~~~~~~i~~~~~~l~~AkrPvi~~G~g~~~a~~~l~~lae-~~~pv~~t~ 235 (544)
T PRK07064 162 EIPIDIQAAEIELPD--DLA-P--VHVAVPEPDAAAVAELAERLAAARRPLLWLGGGARHAGAEVKRLVD-LGFGVVTST 235 (544)
T ss_pred EeCHhHhhccccccc--ccc-c--ccCCCCCCCHHHHHHHHHHHHhCCCCEEEECCChHhHHHHHHHHHH-cCCCEEEcc
Confidence 999999877643210 000 0 0111223577889999999999999999999999888899999999 999999999
Q ss_pred CCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcceEe
Q 048725 324 MGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVC 403 (661)
Q Consensus 324 ~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~ 403 (661)
+|||+||++||+++|++| ++..+++++++|||||+||++++++.+..|. +....++||||+|+..+++++..++.+.
T Consensus 236 ~~kg~~~~~hp~~~G~~~--~~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~ 312 (544)
T PRK07064 236 QGRGVVPEDHPASLGAFN--NSAAVEALYKTCDLLLVVGSRLRGNETLKYS-LALPRPLIRVDADAAADGRGYPNDLFVH 312 (544)
T ss_pred CccccCCCCChhhcccCC--CCHHHHHHHHhCCEEEEecCCCCcccccccc-cCCCCceEEEeCCHHHhCCcCCCCceEe
Confidence 999999999999999887 6788889999999999999999988776654 3334589999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCCh-HHHHHHHhhhcCCCcEEEEcCCh-hHH
Q 048725 404 ADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFKTFEESIPP-QYAIQVLDELTNGEAIISTGVGQ-HQM 481 (661)
Q Consensus 404 ~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~-~~~~~~l~~~l~~d~iv~~d~G~-~~~ 481 (661)
+|++.+|++|++.+.... .....|.+++.+.+.+..... .+.+.+ ..+++.|++.++++.+++.|+|. +..
T Consensus 313 ~d~~~~l~~L~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~ii~~d~~~~~~~ 385 (544)
T PRK07064 313 GDAARVLARLADRLEGRL----SVDPAFAADLRAAREAAVADL---RKGLGPYAKLVDALRAALPRDGNWVRDVTISNST 385 (544)
T ss_pred cCHHHHHHHHHHhhhhcc----ccchHHHHHHHHHHHhhhhhc---ccccCcHHHHHHHHHHhCCCCCEEEeCCccchHH
Confidence 999999999998775321 112457766554443322111 123444 46999999999999999999984 588
Q ss_pred HHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchh
Q 048725 482 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGM 561 (661)
Q Consensus 482 ~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~ 561 (661)
|..++++...|++++++.+ |+|||++|+|||+++|+|+++||+++|||||+|++|||+|++++++|+++||+||++||+
T Consensus 386 ~~~~~~~~~~p~~~~~~~~-g~mG~~lpaAiGa~lA~p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~yg~ 464 (544)
T PRK07064 386 WGNRLLPIFEPRANVHALG-GGIGQGLAMAIGAALAGPGRKTVGLVGDGGLMLNLGELATAVQENANMVIVLMNDGGYGV 464 (544)
T ss_pred HHHHhcCccCCCceeccCC-CccccccchhhhhhhhCcCCcEEEEEcchHhhhhHHHHHHHHHhCCCeEEEEEeCChhHH
Confidence 9999999999998887766 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCCCcCCc
Q 048725 562 VMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPM 641 (661)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~~~~p~ 641 (661)
++.+|+..|+.......+. .+||.++|++||+++.+|++++||+++|+++++.+||+||||.++.. +.+|+
T Consensus 465 ~~~~~~~~~~~~~~~~~~~--------~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIeV~~~~~-~~~~~ 535 (544)
T PRK07064 465 IRNIQDAQYGGRRYYVELH--------TPDFALLAASLGLPHWRVTSADDFEAVLREALAKEGPVLVEVDMLSI-GPFAA 535 (544)
T ss_pred HHHHHHHhcCCccccccCC--------CCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHcCCCCEEEEEEcccc-cccCC
Confidence 9988865554322111111 27999999999999999999999999999999999999999999843 34454
Q ss_pred C
Q 048725 642 I 642 (661)
Q Consensus 642 ~ 642 (661)
.
T Consensus 536 ~ 536 (544)
T PRK07064 536 A 536 (544)
T ss_pred C
Confidence 4
No 39
>PRK07524 hypothetical protein; Provisional
Probab=100.00 E-value=1.6e-94 Score=816.00 Aligned_cols=521 Identities=28% Similarity=0.485 Sum_probs=447.4
Q ss_pred cHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHH
Q 048725 89 KGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVS 168 (661)
Q Consensus 89 ~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~ 168 (661)
+++|+|++.|+++||++|||+||+.+++|+++|.++ +|++|.|+||++|+||||||||+||||+||++|+|||++|+++
T Consensus 3 ~~a~~l~~~L~~~Gv~~vFg~pG~~~~~~~dal~~~-~i~~i~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~~~ 81 (535)
T PRK07524 3 TCGEALVRLLEAYGVETVFGIPGVHTVELYRGLAGS-GIRHVTPRHEQGAGFMADGYARVSGKPGVCFIITGPGMTNIAT 81 (535)
T ss_pred cHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhc-CCcEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHH
Confidence 789999999999999999999999999999999765 6999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCcEEEEecCCCCcccCCC--CCCC-CCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEe
Q 048725 169 GLADALLDSVPLVAITGQVPRRMIGTD--AFQE-TPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDV 245 (661)
Q Consensus 169 gl~~A~~~~iPll~ItG~~p~~~~g~~--~~q~-~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~i 245 (661)
||++||.+++|||+|+|+.+....+++ .+|+ .||.++++++|||++++.+++++++.+++||+.|+++|+|||||+|
T Consensus 82 gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~i 161 (535)
T PRK07524 82 AMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGVAAFSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEI 161 (535)
T ss_pred HHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhhhceeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEe
Confidence 999999999999999999998877753 6677 5999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCccchHHHHHHHHHHhCCCeeecCCC
Q 048725 246 PKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMG 325 (661)
Q Consensus 246 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~~a~~~l~~lae~lg~PV~tt~~g 325 (661)
|.|++.+++..... . +. .......++++.+++++++|.+||||+|++|.|+.++.+++.+|||++++||++|++|
T Consensus 162 P~Dv~~~~~~~~~~---~-~~-~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~a~~~l~~lae~l~~pV~tt~~~ 236 (535)
T PRK07524 162 PLDVLAAPADHLLP---A-PP-TRPARPGPAPAALAQAAERLAAARRPLILAGGGALAAAAALRALAERLDAPVALTINA 236 (535)
T ss_pred CHhHHhcccccccC---c-cc-ccCCCCCCCHHHHHHHHHHHHhCCCcEEEECCChHHHHHHHHHHHHHHCCCEEEcccc
Confidence 99998876532110 0 00 0111223578889999999999999999999999888999999999999999999999
Q ss_pred CCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCc--ccccCCCCeEEEEcCCchhhccCCCCcceEe
Q 048725 326 LGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGK--LEAFASRAKIVHIDIDSAEIGKNKQPHVSVC 403 (661)
Q Consensus 326 kg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~--~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~ 403 (661)
||.||++||+++|..| ++..+++++++||+||+||++++++.+.. +..+.++.++||||+|+.++++++..++.|.
T Consensus 237 kg~~p~~hp~~~G~~~--~~~~~~~~~~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~ 314 (535)
T PRK07524 237 KGLLPAGHPLLLGASQ--SLPAVRALIAEADVVLAVGTELGETDYDVYFDGGFPLPGELIRIDIDPDQLARNYPPALALV 314 (535)
T ss_pred cccCCCCChhhccCCC--CCHHHHHHHHhCCEEEEeCCCcCccccccccccccCCCCCEEEEECCHHHhCCCcCCCceEe
Confidence 9999999999999765 56788999999999999999987654421 1235556789999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCCCcHHHH-HHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEEEEcCChhHHH
Q 048725 404 ADLKLALKGINRILGGKDAEGRFDFSAWR-EELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMW 482 (661)
Q Consensus 404 ~D~~~~L~~L~~~l~~~~~~~~~~~~~w~-~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~~ 482 (661)
+|++.+|++|++.+..+. ....|. ++.++.+........ ...+.+..+++.|++.++ +.+++.|.|++.+|
T Consensus 315 ~D~~~~L~~L~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~-~~~i~~d~g~~~~~ 386 (535)
T PRK07524 315 GDARAALEALLARLPGQA-----AAADWGAARVAALRQALRAEWD--PLTAAQVALLDTILAALP-DAIFVGDSTQPVYA 386 (535)
T ss_pred cCHHHHHHHHHHhccccC-----CchhhHHHHHHHHHHhchhhcc--ccccCHHHHHHHHHHhCC-CCEEEeCCcHHHHH
Confidence 999999999999876432 112353 222222222111111 123567789999999998 57788899999999
Q ss_pred HHhhccccCCCeEEe-cCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchh
Q 048725 483 AAQFYKYRRPRQWLT-SGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGM 561 (661)
Q Consensus 483 ~~~~~~~~~p~~~~~-~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~ 561 (661)
..++++..+|++|+. +.++|+|||++|+|+|+++|+|+++||+++|||||+|+++||+|++++|+|+++||+||++|++
T Consensus 387 ~~~~~~~~~p~~~~~~~~~~g~mG~~lp~aiGa~lA~p~~~vv~i~GDG~f~~~~~el~ta~~~~lpi~~vV~NN~~~g~ 466 (535)
T PRK07524 387 GNLYFDADAPRRWFNASTGYGTLGYGLPAAIGAALGAPERPVVCLVGDGGLQFTLPELASAVEADLPLIVLLWNNDGYGE 466 (535)
T ss_pred HHHhcccCCCCceEeCCCCcccccchHHHHHHHHHhCCCCcEEEEEcchHHhhhHHHHHHHHHhCCCeEEEEEECCchHH
Confidence 999999999999998 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCC
Q 048725 562 VMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPH 634 (661)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~ 634 (661)
+++.|+.... . ..+. +...+||.++|++||+++.+|++.+||+++|+++++.+||+||||++++
T Consensus 467 i~~~~~~~~~-~----~~~~----~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~~p~liev~~~~ 530 (535)
T PRK07524 467 IRRYMVARDI-E----PVGV----DPYTPDFIALARAFGCAAERVADLEQLQAALRAAFARPGPTLIEVDQAC 530 (535)
T ss_pred HHHHHHHhcC-C----cccc----CCCCCCHHHHHHHCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEEECCc
Confidence 9877653211 1 1111 1113799999999999999999999999999999999999999999985
No 40
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=100.00 E-value=1.6e-94 Score=823.23 Aligned_cols=536 Identities=27% Similarity=0.429 Sum_probs=463.6
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 048725 86 QPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATN 165 (661)
Q Consensus 86 ~~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N 165 (661)
..++++++|++.|+++||++|||+||+.+++|+++|.+ .+|++|.|+||++|+|||+||+|+||||+||++|+|||++|
T Consensus 4 ~~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~-~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n 82 (588)
T PRK07525 4 MKMTPSEAFVETLQAHGITHAFGIIGSAFMDASDLFPP-AGIRFIDVAHEQNAGHMADGYTRVTGRMGMVIGQNGPGITN 82 (588)
T ss_pred ccccHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhc-cCCCEEEecCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHH
Confidence 35799999999999999999999999999999999975 46999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEe
Q 048725 166 LVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDV 245 (661)
Q Consensus 166 ~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~i 245 (661)
+++||++|+.+++|||+|+|+.+....+.+.+|++|+.+++++++||++++.+++++++.+++|++.|+++ +|||||+|
T Consensus 83 ~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~i~~~~~~~~~i~rA~~~A~~~-~GPV~i~i 161 (588)
T PRK07525 83 FVTAVATAYWAHTPVVLVTPQAGTKTIGQGGFQEAEQMPMFEDMTKYQEEVRDPSRMAEVLNRVFDKAKRE-SGPAQINI 161 (588)
T ss_pred HHHHHHHHhhcCCCEEEEeCCCCcccCCCCCCcccchhhhhhhheeEEEECCCHHHHHHHHHHHHHHHhcC-CCCEEEEc
Confidence 99999999999999999999999988888999999999999999999999999999999999999999998 59999999
Q ss_pred ccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeecC
Q 048725 246 PKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTL 323 (661)
Q Consensus 246 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt~ 323 (661)
|.|++.+++.... +.... . ....+++..+++++++|.+|+||+|++|+|+. ++.++|++|||++|+||+||+
T Consensus 162 P~Dv~~~~~~~~~--~~~~~---~-~~~~~~~~~i~~a~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tT~ 235 (588)
T PRK07525 162 PRDYFYGVIDVEI--PQPVR---L-ERGAGGEQSLAEAAELLSEAKFPVILSGAGVVLSDAIEECKALAERLDAPVACGY 235 (588)
T ss_pred ChhHhhhhccccc--Ccccc---C-CCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCeEEcc
Confidence 9999887653211 11111 0 11134678899999999999999999999986 578999999999999999999
Q ss_pred CCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCC---cccccCCCCeEEEEcCCchhhccCCCCcc
Q 048725 324 MGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTG---KLEAFASRAKIVHIDIDSAEIGKNKQPHV 400 (661)
Q Consensus 324 ~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~---~~~~~~~~~~vi~Id~d~~~i~~~~~~~~ 400 (661)
+|||+||++||+++|.+|..++..+++++++||+||+||++++++.+. .+..|.++.++||||.|+..++++++.++
T Consensus 236 ~gkg~~p~~hpl~~G~~g~~g~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~~~iI~Id~d~~~~~~~~~~~~ 315 (588)
T PRK07525 236 LHNDAFPGSHPLWVGPLGYNGSKAAMELIAKADVVLALGTRLNPFGTLPQYGIDYWPKDAKIIQVDINPDRIGLTKKVSV 315 (588)
T ss_pred cccccCCCCCccccccCcccCcHHHHHHHHhCCEEEEECCCCchhhcccccccccCCCCCeEEEEECCHHHhCCCCCCCc
Confidence 999999999999999999989888999999999999999999876553 22345667899999999999999999999
Q ss_pred eEeccHHHHHHHHHHHhcCCCC---CC-------CCCcHHHHHHHHHHHhhCCC---Cc-----CCCCCCCChHHHHHHH
Q 048725 401 SVCADLKLALKGINRILGGKDA---EG-------RFDFSAWREELDEQKVKYPL---SF-----KTFEESIPPQYAIQVL 462 (661)
Q Consensus 401 ~i~~D~~~~L~~L~~~l~~~~~---~~-------~~~~~~w~~~l~~~~~~~~~---~~-----~~~~~~i~~~~~~~~l 462 (661)
.+++|++.+|++|++.+..... .. ......|.+++.+....... .. ......+++.+++..|
T Consensus 316 ~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 395 (588)
T PRK07525 316 GICGDAKAVARELLARLAERLAGDAGREERKALIAAEKSAWEQELSSWDHEDDDPGTDWNEEARARKPDYMHPRQALREI 395 (588)
T ss_pred eEecCHHHHHHHHHHhhhhhccccccchhhhhhhhhhHHHHHHHHHHHHhccccccccccccccccCCCCcCHHHHHHHH
Confidence 9999999999999988853210 00 01124565555443322110 00 0112368999999999
Q ss_pred hhhcCCCcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHH
Q 048725 463 DELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATI 542 (661)
Q Consensus 463 ~~~l~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta 542 (661)
++.+++|.|++.|+|++..|..++++..+|++|+++.++|+|||++|+|||++++.|+++||+++|||||+|++|||+|+
T Consensus 396 ~~~l~~d~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glp~aiGa~la~p~r~vv~i~GDG~f~~~~~el~Ta 475 (588)
T PRK07525 396 QKALPEDAIVSTDIGNNCSIANSYLRFEKGRKYLAPGSFGNCGYAFPAIIGAKIACPDRPVVGFAGDGAWGISMNEVMTA 475 (588)
T ss_pred HHhCCCCcEEEECCcccHHHHHHhcccCCCCeEEccccccccccHHHHHHHHHHhCCCCcEEEEEcCchHhccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhC
Q 048725 543 KVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDT 622 (661)
Q Consensus 543 ~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~ 622 (661)
+++++|+++||+||++|+++++.|...|........+. ..+||.++|++||+++++|++.+||+++|+++++.
T Consensus 476 ~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~-------~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~ 548 (588)
T PRK07525 476 VRHNWPVTAVVFRNYQWGAEKKNQVDFYNNRFVGTELD-------NNVSYAGIAEAMGAEGVVVDTQEELGPALKRAIDA 548 (588)
T ss_pred HHhCCCeEEEEEeCchhHHHHHHHHHHhCCCcccccCC-------CCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhc
Confidence 99999999999999999999887766554321111111 12799999999999999999999999999999975
Q ss_pred ---CCcEEEEEEeCCCC
Q 048725 623 ---PGPYLLDVIFPHQE 636 (661)
Q Consensus 623 ---~gp~lIeV~~~~~~ 636 (661)
+||+||||+++++.
T Consensus 549 ~~~~~p~lIev~~~~~~ 565 (588)
T PRK07525 549 QNEGKTTVIEIMCNQEL 565 (588)
T ss_pred CCCCCcEEEEEEecccc
Confidence 59999999998654
No 41
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=100.00 E-value=9.2e-94 Score=812.62 Aligned_cols=528 Identities=24% Similarity=0.381 Sum_probs=445.9
Q ss_pred CcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 048725 88 RKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLV 167 (661)
Q Consensus 88 ~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l 167 (661)
++|+|+|++.|+++||+||||+||+.++++++++.+ ++|++|.||||++|+||||||+|+||+|+||++|+|||++|++
T Consensus 3 ~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~~~~~~-~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~ 81 (554)
T TIGR03254 3 TDGFHLVIDALKLNGINTIYGVVGIPVTDLARLAQA-KGMRYIGFRHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNGL 81 (554)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchhHHHHHHhh-cCCcEEEeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHhHH
Confidence 479999999999999999999999999999999975 4699999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcEEEEecCCCCccc--CCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEe
Q 048725 168 SGLADALLDSVPLVAITGQVPRRMI--GTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDV 245 (661)
Q Consensus 168 ~gl~~A~~~~iPll~ItG~~p~~~~--g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~i 245 (661)
+||++||.+++|||+|+|+.++... +++.+|++|+..+++++|||++++.+++++++.+++||+.|+++|||||||+|
T Consensus 82 ~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~i 161 (554)
T TIGR03254 82 TALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFAKAAYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDL 161 (554)
T ss_pred HHHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhheeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEc
Confidence 9999999999999999999987743 56789999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeecC
Q 048725 246 PKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTL 323 (661)
Q Consensus 246 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt~ 323 (661)
|.|++.+++....................+.++.+++++++|.+||||+|++|.|+. ++.+++.+|+|++|+||++|+
T Consensus 162 P~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~ 241 (554)
T TIGR03254 162 PAAVLGQTMEAEKAKKTLVKVVDPAPKQLPSPDSVDRAVELLKDAKRPLILLGKGAAYAQADEEIREFVEKTGIPFLPMS 241 (554)
T ss_pred CHHHhhccccccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHHCCCEEEcC
Confidence 999998765321100000000000011135678899999999999999999999996 578999999999999999999
Q ss_pred CCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcc-cccCCCCeEEEEcCCchhhccCCCCcceE
Q 048725 324 MGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKL-EAFASRAKIVHIDIDSAEIGKNKQPHVSV 402 (661)
Q Consensus 324 ~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~-~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 402 (661)
+|||+||++||+++|. ..++++++|||||++|++++++.+..+ ..|.+..++||||+|+..+++++++++.+
T Consensus 242 ~gkg~~p~~hp~~~g~-------~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~vI~id~d~~~~~~~~~~~~~i 314 (554)
T TIGR03254 242 MAKGLLPDTHPQSAAA-------ARSFALAEADVVMLVGARLNWLLSHGKGKLWGEDAKFIQVDIEPTEMDSNRPIAAPV 314 (554)
T ss_pred CcceeCCCCCchhhhH-------HHHHHHhcCCEEEEECCCCchhhccCchhhcCCCCcEEEcCCCHHHhCCCcCCceEE
Confidence 9999999999999873 346789999999999999988766544 34556788999999999999999999999
Q ss_pred eccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCc----CCCCCCCChHHHHHHHhhhcCC--CcEEEEcC
Q 048725 403 CADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSF----KTFEESIPPQYAIQVLDELTNG--EAIISTGV 476 (661)
Q Consensus 403 ~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~----~~~~~~i~~~~~~~~l~~~l~~--d~iv~~d~ 476 (661)
.+|++.+|++|++.+..... .....|.+++.+.++...... .....++++..+++.|++.+++ +.+++.|.
T Consensus 315 ~~D~~~~l~~L~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~~~ivv~d~ 391 (554)
T TIGR03254 315 VGDIGSVVQALLSAAKNGGV---KPPADWRNAIKTKSEKNVAKMAERLSASESPMNYHGALEAIRDVLKDNPDIYLVNEG 391 (554)
T ss_pred ecCHHHHHHHHHHHhhhccc---cchHHHHHHHHHHHHhchhhhhhhcccCCCCcCHHHHHHHHHHhcCCCCCEEEEeCC
Confidence 99999999999998853211 123567776655544322111 1123468999999999999964 78899999
Q ss_pred ChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeC
Q 048725 477 GQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNN 556 (661)
Q Consensus 477 G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN 556 (661)
|++..|..++++...|++++.++++|+|||++|+|||++++. +++||+++|||||+|++|||+|+++|++|+++||+||
T Consensus 392 ~~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lpaaiGaala~-~~~vv~i~GDGsf~m~~~EL~Ta~r~~l~v~~vV~NN 470 (554)
T TIGR03254 392 ANTLDLARNVIDMYKPRHRLDVGTWGVMGIGMGYAIAAAVET-GKPVVALEGDSAFGFSGMEVETICRYNLPVCVVIFNN 470 (554)
T ss_pred chHHHHHHHhcccCCCCcEeeCCCCCcCCchHHHHHHHHhcC-CCcEEEEEcCchhcccHHHHHHHHHcCCCEEEEEEeC
Confidence 999999999999999999999999999999999999999995 8999999999999999999999999999999999999
Q ss_pred CcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCC
Q 048725 557 QHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQE 636 (661)
Q Consensus 557 ~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~ 636 (661)
++|. ...+...++.......+ ...+||.++|++||+++++|++.+||+++|+++++.+||+||||++++++
T Consensus 471 ~~~~--~~~~~~~~~~~~~~~~~-------~~~~df~~la~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIev~id~~~ 541 (554)
T TIGR03254 471 GGIY--RGDDVNVVGADPAPTVL-------VHGARYDKMMKAFGGVGYNVTTPDELKAALNEALASGKPTLINAVIDPSA 541 (554)
T ss_pred hhhh--hhhhhhhcCCCCCcccc-------CCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEECCCc
Confidence 9872 12222211111011111 02379999999999999999999999999999999999999999999766
No 42
>PRK08266 hypothetical protein; Provisional
Probab=100.00 E-value=4e-93 Score=806.33 Aligned_cols=523 Identities=30% Similarity=0.490 Sum_probs=451.4
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcC-CCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRS-NNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATN 165 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~-~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N 165 (661)
.++++|+|++.|+++||++|||+||+++++|+++|.++ ++|++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus 3 ~~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~~~i~~v~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N 82 (542)
T PRK08266 3 TMTGGEAIVAGLVAHGVDTVFGLPGAQLYWLFDALYKAGDRIRVIHTRHEQAAGYMAFGYARSTGRPGVCSVVPGPGVLN 82 (542)
T ss_pred CCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhcCCCCeEEeeccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHH
Confidence 47999999999999999999999999999999999875 57999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCcEEEEecCCCCcccCCC--CCCCC-CHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEE
Q 048725 166 LVSGLADALLDSVPLVAITGQVPRRMIGTD--AFQET-PIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVL 242 (661)
Q Consensus 166 ~l~gl~~A~~~~iPll~ItG~~p~~~~g~~--~~q~~-~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~ 242 (661)
+++|+++||.+++|||+|+|+++....+++ .+|++ ||.++++++|||+.++.+++++++.+++|++.|+++|+||||
T Consensus 83 ~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~ 162 (542)
T PRK08266 83 AGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPDQLATLRSFTKWAERIEHPSEAPALVAEAFQQMLSGRPRPVA 162 (542)
T ss_pred HHHHHHHHHhhCCCEEEEecCCChhhccCCCCcceecccHhhHHhhhcceEEEeCCHHHHHHHHHHHHHHHhhCCCCcEE
Confidence 999999999999999999999998877665 35775 999999999999999999999999999999999999999999
Q ss_pred EEeccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCccchHHHHHHHHHHhCCCeeec
Q 048725 243 IDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVAST 322 (661)
Q Consensus 243 I~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~~a~~~l~~lae~lg~PV~tt 322 (661)
|+||.|++.++.+... .+ .. .......++.+.+++++++|.+||||+|++|+|+.++.+++.+|+|++|+||++|
T Consensus 163 l~iP~dv~~~~~~~~~-~~-~~---~~~~~~~~~~~~i~~~~~~L~~AkrPvIv~G~g~~~a~~~l~~lae~~g~pv~tt 237 (542)
T PRK08266 163 LEMPWDVFGQRAPVAA-AP-PL---RPAPPPAPDPDAIAAAAALIAAAKNPMIFVGGGAAGAGEEIRELAEMLQAPVVAF 237 (542)
T ss_pred EEeCHhHhhCcccccc-cc-cc---cCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCChhhHHHHHHHHHHHHCCCEEEe
Confidence 9999999877642211 00 00 1111224577889999999999999999999998788899999999999999999
Q ss_pred CCCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcceE
Q 048725 323 LMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSV 402 (661)
Q Consensus 323 ~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 402 (661)
++|||.||++||+++|.. .+++++++||+||+||+++++. +..|..+.+..++||||.|+..+++ +.+++.|
T Consensus 238 ~~~kg~~~~~hp~~~g~~------~~~~~~~~aDlvl~lG~~~~~~-~~~~~~~~~~~~~i~id~d~~~~~~-~~~~~~i 309 (542)
T PRK08266 238 RSGRGIVSDRHPLGLNFA------AAYELWPQTDVVIGIGSRLELP-TFRWPWRPDGLKVIRIDIDPTEMRR-LKPDVAI 309 (542)
T ss_pred ccccccCCCCCccccCCH------HHHHHHHhCCEEEEeCCCcCcc-cccccccCCCCcEEEEECCHHHhCC-cCCCceE
Confidence 999999999999998753 4567889999999999999877 4445444556789999999999999 8899999
Q ss_pred eccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChH-HHHHHHhhhcCCCcEEEEcCChhHH
Q 048725 403 CADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQ-YAIQVLDELTNGEAIISTGVGQHQM 481 (661)
Q Consensus 403 ~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~-~~~~~l~~~l~~d~iv~~d~G~~~~ 481 (661)
.+|++.+|++|++.+.... .....|.+++...+....... ..+.++ .+++.|++.++++.+++.|+|++..
T Consensus 310 ~~D~~~~l~~L~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~lp~d~ivv~d~g~~~~ 381 (542)
T PRK08266 310 VADAKAGTAALLDALSKAG----SKRPSRRAELRELKAAARQRI----QAVQPQASYLRAIREALPDDGIFVDELSQVGF 381 (542)
T ss_pred ecCHHHHHHHHHHhhhhcc----cCchHHHHHHHHHHHhhhhcc----ccCCHHHHHHHHHHHhcCCCcEEEeCCcHHHH
Confidence 9999999999998875321 112356665554443322111 125665 4789999999999999999999999
Q ss_pred HHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchh
Q 048725 482 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGM 561 (661)
Q Consensus 482 ~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~ 561 (661)
|...+++...+++++.++++|+|||++|+|+|+++++|+++||+++|||+|+|+++||+|++++++|+++||+||++|++
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~GsmG~~lp~aiGa~la~p~~~vv~v~GDG~f~~~~~eL~ta~~~~lpv~ivv~NN~~y~~ 461 (542)
T PRK08266 382 ASWFAFPVYAPRTFVTCGYQGTLGYGFPTALGAKVANPDRPVVSITGDGGFMFGVQELATAVQHNIGVVTVVFNNNAYGN 461 (542)
T ss_pred HHHHhcccCCCCcEEeCCCCcccccHHHHHHHHHHhCCCCcEEEEEcchhhhccHHHHHHHHHhCCCeEEEEEeCCcchH
Confidence 99999999899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCCCc
Q 048725 562 VMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHV 638 (661)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~~~ 638 (661)
+++.|+..|+.. +.+... ..+||.++|++||+++.+|++.+||+++|+++++.++|.||||++++.++.
T Consensus 462 ~~~~~~~~~~~~----~~~~~~----~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~~p~liev~i~~~~~~ 530 (542)
T PRK08266 462 VRRDQKRRFGGR----VVASDL----VNPDFVKLAESFGVAAFRVDSPEELRAALEAALAHGGPVLIEVPVPRGSEA 530 (542)
T ss_pred HHHHHHHhcCCC----cccCCC----CCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhCCCcEEEEEEecCCCCc
Confidence 988775555332 122211 127999999999999999999999999999999999999999999877653
No 43
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=6.5e-93 Score=809.59 Aligned_cols=538 Identities=30% Similarity=0.456 Sum_probs=452.0
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 048725 86 QPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATN 165 (661)
Q Consensus 86 ~~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N 165 (661)
..++++++|++.|+++||++|||+|+.. .+++++.+ ++|++|.||||++|+||||||+|+||+|+||++|+|||++|
T Consensus 12 ~~~~~a~~i~~~L~~~GV~~vFG~~~~~--~~~~~~~~-~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N 88 (578)
T PRK06112 12 LNGTVAHAIARALKRHGVEQIFGQSLPS--ALFLAAEA-IGIRQIAYRTENAGGAMADGYARVSGKVAVVTAQNGPAATL 88 (578)
T ss_pred cCcCHHHHHHHHHHHCCCCEEeecccch--HhHHHHhh-cCCcEEEeccHHHHHHHHHHHHHHhCCCEEEEeCCCCcHHH
Confidence 4578999999999999999999998654 35566764 46999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEe
Q 048725 166 LVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDV 245 (661)
Q Consensus 166 ~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~i 245 (661)
+++||++||.+++|||+|+|+.+....+++.+|++||.++++++|||++++.+++++++.+++||+.|+++++|||||+|
T Consensus 89 ~~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~Q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~i 168 (578)
T PRK06112 89 LVAPLAEALKASVPIVALVQDVNRDQTDRNAFQELDHIALFQSCTKWVRRVTVAERIDDYVDQAFTAATSGRPGPVVLLL 168 (578)
T ss_pred HHHHHHHHhhcCCCEEEEecCCccccCCCCCccccChhhhhccccceEEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeec
Q 048725 246 PKDIQQQLAVPNWNQ-PIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVAST 322 (661)
Q Consensus 246 P~dv~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt 322 (661)
|.|++.+++...... +..+..+ ...+..+++..+++++++|.+||||+|++|+|+. ++.+++.+|+|++|+||++|
T Consensus 169 P~Dv~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~~t 247 (578)
T PRK06112 169 PADLLTAAAAAPAAPRSNSLGHF-PLDRTVPAPQRLAEAASLLAQAQRPVVVAGGGVHISGASAALAALQSLAGLPVATT 247 (578)
T ss_pred CHhHhhCccccccCcccccccCC-CCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCccccchHHHHHHHHHHhCCCEEEc
Confidence 999987765321100 0001111 1111235678899999999999999999999985 57899999999999999999
Q ss_pred CCCCCCCCCCCCCCCcccCCCC-c----HHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCC
Q 048725 323 LMGLGSFPGTDELSLQMLGMHG-T----VYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQ 397 (661)
Q Consensus 323 ~~gkg~~p~~hpl~lg~~G~~g-~----~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~ 397 (661)
++|||.||++||+++|.+|..+ . ..++++++++|+||+||++++++.++.|..+.++.++||||+|+.++++++.
T Consensus 248 ~~~kg~~p~~hp~~~G~~g~~~~~~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~ 327 (578)
T PRK06112 248 NMGKGAVDETHPLSLGVVGSLMGPRSPGRHLRDLVREADVVLLVGTRTNQNGTDSWSLYPEQAQYIHIDVDGEEVGRNYE 327 (578)
T ss_pred ccccccCCCCCccccccccccCCCccchHHHHHHHHhCCEEEEECCCCCccccccccccCCCCeEEEEECChHHhCcccc
Confidence 9999999999999999988642 2 4677889999999999999998887777666667899999999999999776
Q ss_pred CcceEeccHHHHHHHHHHHhcCCCCCC-CCCcHHHHHHHHHHHhhCCC---C-cCCCCCCCChHHHHHHHhhhcCCCcEE
Q 048725 398 PHVSVCADLKLALKGINRILGGKDAEG-RFDFSAWREELDEQKVKYPL---S-FKTFEESIPPQYAIQVLDELTNGEAII 472 (661)
Q Consensus 398 ~~~~i~~D~~~~L~~L~~~l~~~~~~~-~~~~~~w~~~l~~~~~~~~~---~-~~~~~~~i~~~~~~~~l~~~l~~d~iv 472 (661)
++.+.+|++.+|++|++.+...+... ......|.+.+.+....... . .......+++.++++.|.+.++++.++
T Consensus 328 -~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~l~~~~iv 406 (578)
T PRK06112 328 -ALRLVGDARLTLAALTDALRGRDLAARAGRRAALEPAIAAGREAHREDSAPVALSDASPIRPERIMAELQAVLTGDTIV 406 (578)
T ss_pred -ceEEEeCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhhhhhhhhhhcCCCCCcCHHHHHHHHHHhCCCCCEE
Confidence 69999999999999998875432110 11234454443322221110 0 011223589999999999999999999
Q ss_pred EEcCChhHHHHHhhccccCCC-eEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEE
Q 048725 473 STGVGQHQMWAAQFYKYRRPR-QWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKI 551 (661)
Q Consensus 473 ~~d~G~~~~~~~~~~~~~~p~-~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~i 551 (661)
+.|+|++.+|..+++....+. +|+++.++|+||+++|+|+|+++++|+++||+++|||||+|+++||+|++++++|+++
T Consensus 407 v~d~g~~~~~~~~~~~~~~~~~~~~~~~g~gsmG~~l~~aiGa~la~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~~~~ 486 (578)
T PRK06112 407 VADASYSSIWVANFLTARRAGMRFLTPRGLAGLGWGVPMAIGAKVARPGAPVICLVGDGGFAHVWAELETARRMGVPVTI 486 (578)
T ss_pred EEcccHHHHHHHHhcCccCCCceEECCCCccccccHHHHHHHHHhhCCCCcEEEEEcchHHHhHHHHHHHHHHhCCCeEE
Confidence 999999999999999876765 6899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEE
Q 048725 552 LLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVI 631 (661)
Q Consensus 552 vV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~ 631 (661)
||+||++||+.++.+...|+...... ....+||.++|++||+++++|++.+||+++|+++++.+||.||||+
T Consensus 487 vv~NN~~~g~~~~~~~~~~~~~~~~~--------~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIev~ 558 (578)
T PRK06112 487 VVLNNGILGFQKHAETVKFGTHTDAC--------HFAAVDHAAIARACGCDGVRVEDPAELAQALAAAMAAPGPTLIEVI 558 (578)
T ss_pred EEEeCCccCCEEeccccccCCccccC--------cCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 99999999987655443332211111 1113799999999999999999999999999999999999999999
Q ss_pred eCCCC
Q 048725 632 FPHQE 636 (661)
Q Consensus 632 ~~~~~ 636 (661)
+++++
T Consensus 559 ~~~~~ 563 (578)
T PRK06112 559 TDPSA 563 (578)
T ss_pred cCccc
Confidence 99766
No 44
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=100.00 E-value=9.7e-93 Score=806.19 Aligned_cols=530 Identities=24% Similarity=0.364 Sum_probs=445.4
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNL 166 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~ 166 (661)
.++|+|+|++.|+++||+||||+||+.++++++++.+ ++|++|.||||++|+|||+||+|+||+|+||++|+|||++|+
T Consensus 9 ~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~~~~~~-~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~ 87 (569)
T PRK09259 9 LTDGFHLVIDALKLNGIDTIYGVVGIPITDLARLAQA-EGIRYIGFRHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNG 87 (569)
T ss_pred CCcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhh-CCCCEEeeCCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHH
Confidence 3689999999999999999999999999999999975 469999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCCcc--cCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEE
Q 048725 167 VSGLADALLDSVPLVAITGQVPRRM--IGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLID 244 (661)
Q Consensus 167 l~gl~~A~~~~iPll~ItG~~p~~~--~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~ 244 (661)
++||++|+.+++|||+|+|+.++.. .+++.+|++|+.++++++|||++++.+++++++.+++||+.|+++|+|||||+
T Consensus 88 l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~~tk~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~ 167 (569)
T PRK09259 88 LTALANATTNCFPMIMISGSSEREIVDLQQGDYEELDQLNAAKPFCKAAFRVNRAEDIGIGVARAIRTAVSGRPGGVYLD 167 (569)
T ss_pred HHHHHHHHhcCCCEEEEEccCCcccccccCCCccccchhhhhhhheeeeEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEE
Confidence 9999999999999999999998764 35678999999999999999999999999999999999999999999999999
Q ss_pred eccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeec
Q 048725 245 VPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVAST 322 (661)
Q Consensus 245 iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt 322 (661)
||.|++.+++....................++++.+++++++|.+||||+|++|+|+. ++.+++.+|||++|+||++|
T Consensus 168 iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIi~G~g~~~~~a~~~l~~lae~l~iPV~tt 247 (569)
T PRK09259 168 LPAKVLAQTMDADEALTSLVKVVDPAPAQLPAPEAVDRALDLLKKAKRPLIILGKGAAYAQADEQIREFVEKTGIPFLPM 247 (569)
T ss_pred eCHHHhhCcccccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECcCccccChHHHHHHHHHHHCCCEEec
Confidence 9999998765321000000000000111235678899999999999999999999996 57899999999999999999
Q ss_pred CCCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcc-cccCCCCeEEEEcCCchhhccCCCCcce
Q 048725 323 LMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKL-EAFASRAKIVHIDIDSAEIGKNKQPHVS 401 (661)
Q Consensus 323 ~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~-~~~~~~~~vi~Id~d~~~i~~~~~~~~~ 401 (661)
++|||+||++||+++|. ..++++++||+||+||++++++.+..+ ..|.++.++||||+|+.+++++++.++.
T Consensus 248 ~~gkg~~~e~hpl~~G~-------~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~ii~Id~d~~~~~~~~~~~~~ 320 (569)
T PRK09259 248 SMAKGLLPDTHPQSAAA-------ARSLALANADVVLLVGARLNWLLSHGKGKTWGADKKFIQIDIEPQEIDSNRPIAAP 320 (569)
T ss_pred ccccccCCCCChhhhhH-------HHHHHHhcCCEEEEeCCCCchhcccCchhccCCCCcEEEecCChHHhcCCccCcee
Confidence 99999999999999984 346779999999999999988765433 3455678999999999999999999999
Q ss_pred EeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCc----CCCCCCCChHHHHHHHhhhcC--CCcEEEEc
Q 048725 402 VCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSF----KTFEESIPPQYAIQVLDELTN--GEAIISTG 475 (661)
Q Consensus 402 i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~----~~~~~~i~~~~~~~~l~~~l~--~d~iv~~d 475 (661)
+.+|++.+|++|++.+.... ......|.+++.+.+....... .....++++..+++.|++.++ +|.+++.|
T Consensus 321 i~~D~~~~L~~L~~~l~~~~---~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~d~iv~~~ 397 (569)
T PRK09259 321 VVGDIGSVMQALLAGLKQNT---FKAPAEWLDALAERKEKNAAKMAEKLSTDTQPMNFYNALGAIRDVLKENPDIYLVNE 397 (569)
T ss_pred EecCHHHHHHHHHHHhhhcc---ccchHHHHHHHHHHHHhChhhhhhhhcCCCCCcCHHHHHHHHHHHhCCCCCEEEEeC
Confidence 99999999999998875321 1123568776665543332111 112345899999999999994 48888889
Q ss_pred CChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEe
Q 048725 476 VGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLN 555 (661)
Q Consensus 476 ~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~N 555 (661)
.|++..|..++++...|+++++++++|+|||++|+|||++++ ++++||+++|||||+|+++||+|++++++|+++||+|
T Consensus 398 ~~~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la-~~~~vv~i~GDG~f~m~~~EL~Ta~r~~lpi~~vV~N 476 (569)
T PRK09259 398 GANTLDLARNIIDMYKPRHRLDCGTWGVMGIGMGYAIAAAVE-TGKPVVAIEGDSAFGFSGMEVETICRYNLPVTVVIFN 476 (569)
T ss_pred chHHHHHHHHhcccCCCCceEeCCCCccccccHHHHHHHHhc-CCCcEEEEecCccccccHHHHHHHHHcCCCEEEEEEe
Confidence 888888988889999999999999999999999999999999 5899999999999999999999999999999999999
Q ss_pred CCcchhHHHHHHHhhc-ccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCC
Q 048725 556 NQHLGMVMQWEDRFYK-ANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPH 634 (661)
Q Consensus 556 N~g~g~~~~~~~~~~~-~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~ 634 (661)
|++| ....+...+. .......+ ...+||.++|++||+++.+|++.+||+++|+++++.+||+||||++++
T Consensus 477 N~~~--~~~~~~~~~~~~~~~~~~~-------~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIev~id~ 547 (569)
T PRK09259 477 NGGI--YRGDDVNLSGAGDPSPTVL-------VHHARYDKMMEAFGGVGYNVTTPDELRHALTEAIASGKPTLINVVIDP 547 (569)
T ss_pred ChhH--HHHHHHHhhcCCCcccccc-------CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 9975 2222222211 11111111 113799999999999999999999999999999999999999999997
Q ss_pred CCC
Q 048725 635 QEH 637 (661)
Q Consensus 635 ~~~ 637 (661)
++.
T Consensus 548 ~~~ 550 (569)
T PRK09259 548 AAG 550 (569)
T ss_pred CCC
Confidence 764
No 45
>PLN02573 pyruvate decarboxylase
Probab=100.00 E-value=1.3e-93 Score=811.68 Aligned_cols=532 Identities=19% Similarity=0.251 Sum_probs=439.7
Q ss_pred CCCCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhH
Q 048725 85 DQPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGAT 164 (661)
Q Consensus 85 ~~~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~ 164 (661)
+..++++|+|++.|+++||+||||+||+.+++|+++|.+.++|++|.||||++|+||||||+|+|| ++||++|+|||++
T Consensus 13 ~~~~~~a~~l~~~L~~~Gv~~vFGvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyaR~tg-~gv~~~t~GpG~~ 91 (578)
T PLN02573 13 SSDATLGRHLARRLVEIGVTDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARARG-VGACVVTFTVGGL 91 (578)
T ss_pred cccccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHhC-CCeEEEecCccHH
Confidence 335789999999999999999999999999999999976557999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCC--------CCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcC
Q 048725 165 NLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQE--------TPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSG 236 (661)
Q Consensus 165 N~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~--------~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~ 236 (661)
|+++|+++||.+++|||+|+|+.++...+++.+|+ .++.++++++|||+.++.+++++++.+++||+.|+++
T Consensus 92 n~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk~s~~v~~~~~~~~~l~~A~~~A~~~ 171 (578)
T PLN02573 92 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVINNLEDAHELIDTAISTALKE 171 (578)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHHhhceEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999887777655322 1235899999999999999999999999999999998
Q ss_pred CCceEEEEeccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHH
Q 048725 237 RPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVEL 314 (661)
Q Consensus 237 ~~GPV~I~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~ 314 (661)
| |||||+||.|++.++.......+.............+.+..+++++++|.+||||+|++|+|+. ++.+++++|||+
T Consensus 172 ~-gPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~ 250 (578)
T PLN02573 172 S-KPVYISVSCNLAAIPHPTFSREPVPFFLTPRLSNKMSLEAAVEAAAEFLNKAVKPVLVGGPKLRVAKACKAFVELADA 250 (578)
T ss_pred C-CCEEEEeehhhhcCccccccCCCCCcccccCCCChHHHHHHHHHHHHHHHhCCCCEEEEChhhcccchHHHHHHHHHH
Confidence 6 9999999999987653211000111100000001123467799999999999999999999985 678999999999
Q ss_pred hCCCeeecCCCCCCCCCCCCCCCccc-CCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhc
Q 048725 315 TGIPVASTLMGLGSFPGTDELSLQML-GMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIG 393 (661)
Q Consensus 315 lg~PV~tt~~gkg~~p~~hpl~lg~~-G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~ 393 (661)
+|+||+||++|||+||++||+++|++ |..++..+++++++||+||+||++++++.+..|..+.+..++||||+|+..++
T Consensus 251 ~~~PV~tt~~gkg~~pe~hpl~~G~~~G~~~~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~id~d~~~i~ 330 (578)
T PLN02573 251 SGYPVAVMPSAKGLVPEHHPHFIGTYWGAVSTPFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAIIVQPDRVTIG 330 (578)
T ss_pred hCCCEEECcccCCCCCCcCCCceEEeeCCCCCHHHHHHHHhCCEEEEECCccCCcccccccccCCCCcEEEEeCCEEEEC
Confidence 99999999999999999999999997 88899999999999999999999999888776655566788999999999999
Q ss_pred cCCCCcceEeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEEE
Q 048725 394 KNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIIS 473 (661)
Q Consensus 394 ~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~ 473 (661)
+++ ++.+. |++.+|++|++.+.... ..+..|.. ......... ......++++.++++.|++.+++|.|++
T Consensus 331 ~~~--~~~~~-~~~~~l~~L~~~l~~~~----~~~~~~~~-~~~~~~~~~--~~~~~~~i~~~~~~~~l~~~l~~d~iiv 400 (578)
T PLN02573 331 NGP--AFGCV-LMKDFLEALAKRVKKNT----TAYENYKR-IFVPEGEPL--KSEPGEPLRVNVLFKHIQKMLSGDTAVI 400 (578)
T ss_pred Ccc--eECCc-CHHHHHHHHHHHhhccc----cccccccc-cccCcccCC--CCCCCCccCHHHHHHHHHHhcCCCCEEE
Confidence 864 34444 89999999998875421 11122321 110000000 1112345899999999999999999999
Q ss_pred EcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEE
Q 048725 474 TGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILL 553 (661)
Q Consensus 474 ~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV 553 (661)
.|+|++ +|..++++.+++..++.+.++|+|||++|+|||+++|+|+++||+|+|||||+|++|||+|++||++|+++||
T Consensus 401 ~D~G~~-~~~~~~~~~~~~~~~~~~~~~gsmG~glpaaiGa~lA~p~r~vv~i~GDG~f~m~~~EL~Ta~r~~lpvv~vV 479 (578)
T PLN02573 401 AETGDS-WFNCQKLKLPEGCGYEFQMQYGSIGWSVGATLGYAQAAPDKRVIACIGDGSFQVTAQDVSTMIRCGQKSIIFL 479 (578)
T ss_pred Eecccc-hhhHHhccCCCCCeEEeecchhhhhhhhhHHHHHHHhCCCCceEEEEeccHHHhHHHHHHHHHHcCCCCEEEE
Confidence 999986 5555777777788899999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcC-----CCEeeeCCHHHHHHHHHHHHh--CCCcE
Q 048725 554 LNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACG-----IPGAQVTRKADLRAAIQTMLD--TPGPY 626 (661)
Q Consensus 554 ~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G-----~~~~~v~~~~el~~al~~a~~--~~gp~ 626 (661)
+||++|+++++.++.. ++. ...+||.++|++|| +++.+|++.+||+++|+++++ .++|+
T Consensus 480 ~NN~~yg~~~~~~~~~---------~~~-----~~~~d~~~lA~a~G~~~g~~~~~~V~~~~eL~~al~~a~~~~~~~p~ 545 (578)
T PLN02573 480 INNGGYTIEVEIHDGP---------YNV-----IKNWNYTGLVDAIHNGEGKCWTAKVRTEEELIEAIATATGEKKDCLC 545 (578)
T ss_pred EeCCceeEEEeecccC---------ccc-----cCCCCHHHHHHHhcCcCCceeEEEecCHHHHHHHHHHHHhhCCCCcE
Confidence 9999999975432110 111 11279999999996 899999999999999999984 69999
Q ss_pred EEEEEeCCCCCcCCcCC
Q 048725 627 LLDVIFPHQEHVLPMIP 643 (661)
Q Consensus 627 lIeV~~~~~~~~~p~~~ 643 (661)
||||++++++...|..+
T Consensus 546 lieV~v~~~~~~~~~~~ 562 (578)
T PLN02573 546 FIEVIVHKDDTSKELLE 562 (578)
T ss_pred EEEEEcCcCCCCHHHHH
Confidence 99999998776555443
No 46
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=1.8e-91 Score=794.72 Aligned_cols=529 Identities=24% Similarity=0.316 Sum_probs=440.5
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCC-----CCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccch
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSN-----NIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGP 161 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~-----~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGp 161 (661)
.++++|+|++.|+++||++|||+||+++++|+++|.+++ +|++|.||||++|+||||||+|+||||+||++|+||
T Consensus 6 ~~~~a~~l~~~L~~~GV~~iFgvpG~~~~~l~dal~~~~~~g~~~i~~V~~rhE~~A~~~Adgyar~tgk~gv~~~t~GP 85 (569)
T PRK08327 6 MYTAAELFLELLKELGVDYIFINSGTDYPPIIEAKARARAAGRPLPEFVICPHEIVAISMAHGYALVTGKPQAVMVHVDV 85 (569)
T ss_pred cccHHHHHHHHHHHCCCCEEEEcCCCCcHHHHHHHHhhhhcCCCCCcEEecCCHHHHHHHHHHHHHhhCCCeEEEEecCH
Confidence 368999999999999999999999999999999997643 399999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhhCCCcEEEEecCCCCcccCC--------CCCCC-CCHHHHhhcccccccccCCcCcHHHHHHHHHHH
Q 048725 162 GATNLVSGLADALLDSVPLVAITGQVPRRMIGT--------DAFQE-TPIVEVTRSITKHNYLVLDVDDIPRIVREAFLL 232 (661)
Q Consensus 162 G~~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~--------~~~q~-~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~ 232 (661)
|++|+++||++||.+++|||+|+|+.+....++ +.+|+ +|+..+++++|||++++.+++++.+.+++|++.
T Consensus 86 G~~N~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~~~~~vtk~~~~v~~~~~~~~~l~~A~~~ 165 (569)
T PRK08327 86 GTANALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGGLVREYVKWDYEIRRGDQIGEVVARAIQI 165 (569)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHHHHHhhhhhhhcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999998766543 46899 699999999999999999999999999999999
Q ss_pred hhcCCCceEEEEeccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHH
Q 048725 233 ATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRK 310 (661)
Q Consensus 233 a~s~~~GPV~I~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~ 310 (661)
|.++|+|||||+||.|++.+++.... ...+.........++++.+++++++|++||||+|++|+|+. ++.+++.+
T Consensus 166 a~~~~~GPV~i~iP~Dv~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~ 242 (569)
T PRK08327 166 AMSEPKGPVYLTLPREVLAEEVPEVK---ADAGRQMAPAPPAPDPEDIARAAEMLAAAERPVIITWRAGRTAEGFASLRR 242 (569)
T ss_pred HhcCCCCCEEEECcHHHHhhhccccc---cCccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEecccCCcccHHHHHH
Confidence 99999999999999999987653211 00001111112245788999999999999999999999996 57899999
Q ss_pred HHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCch
Q 048725 311 FVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSA 390 (661)
Q Consensus 311 lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~ 390 (661)
|||++++||++|++|||.||++||+++|.. ++++++++||||++|+++++..+.. .+.++.++||||+|+.
T Consensus 243 lae~l~~Pv~tt~~gkg~~~~~hp~~~G~~-------~~~~~~~aDlvl~lG~~l~~~~~~~--~~~~~~~vi~Id~d~~ 313 (569)
T PRK08327 243 LAEELAIPVVEYAGEVVNYPSDHPLHLGPD-------PRADLAEADLVLVVDSDVPWIPKKI--RPDADARVIQIDVDPL 313 (569)
T ss_pred HHHHhCCCEEecCCCceeCCCCCccccccc-------cchhhhhCCEEEEeCCCCCCccccc--cCCCCCeEEEEeCChh
Confidence 999999999999999999999999999864 5678899999999999987654432 2455678999999999
Q ss_pred hhc---cCCCCcceEeccHHHHHHHHHHHhcCCCCCCC----CCcHHHHHHHHHHHhhCCCC--cCCCCCCCChHHHHHH
Q 048725 391 EIG---KNKQPHVSVCADLKLALKGINRILGGKDAEGR----FDFSAWREELDEQKVKYPLS--FKTFEESIPPQYAIQV 461 (661)
Q Consensus 391 ~i~---~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~----~~~~~w~~~l~~~~~~~~~~--~~~~~~~i~~~~~~~~ 461 (661)
+++ ++++.++.|.+|++.+|++|++.+........ .....|.+...+........ .......+++.++++.
T Consensus 314 ~~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 393 (569)
T PRK08327 314 KSRIPLWGFPCDLCIQADTSTALDQLEERLKSLASAERRRARRRRAAVRELRIRQEAAKRAEIERLKDRGPITPAYLSYC 393 (569)
T ss_pred hhcccccCcceeEEEecCHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHHhhhhhhhhhhccCCCCCcCHHHHHHH
Confidence 987 47888999999999999999998864211000 01224654443332211100 0112346999999999
Q ss_pred HhhhcCCCcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHH--H
Q 048725 462 LDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQE--L 539 (661)
Q Consensus 462 l~~~l~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~e--L 539 (661)
|++.++++.+++++. .|..++++..++.+|++++++|+||+++|+|+|+++++|+++||+++|||||+|+++| |
T Consensus 394 l~~~l~~~~~vv~~~----~~~~~~~~~~~~~~~~~~~~~gsmG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~e~~l 469 (569)
T PRK08327 394 LGEVADEYDAIVTEY----PFVPRQARLNKPGSYFGDGSAGGLGWALGAALGAKLATPDRLVIATVGDGSFIFGVPEAAH 469 (569)
T ss_pred HHHhcCccceEEecc----HHHHHhcCccCCCCeeeCCCCCCCCcchHHHHHHhhcCCCCeEEEEecCcceeecCcHHHH
Confidence 999999988888664 4888999999999999999999999999999999999999999999999999999876 8
Q ss_pred HHHHHcCCCeEEEEEeCCcchhHHHHHHHhhccccc---ccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHH
Q 048725 540 ATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRA---HTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAI 616 (661)
Q Consensus 540 ~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~---~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al 616 (661)
+|++++++|+++||+||++||++++.|+..|..... ....+. .....+||.++|++||+++.+|++.+||+++|
T Consensus 470 ~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~~la~a~G~~~~~v~~~~el~~al 546 (569)
T PRK08327 470 WVAERYGLPVLVVVFNNGGWLAVKEAVLEVYPEGYAARKGTFPGT---DFDPRPDFAKIAEAFGGYGERVEDPEELKGAL 546 (569)
T ss_pred HHHHHhCCCEEEEEEeCcccccchhHHhhhCcccccccccccccc---cCCCCCCHHHHHHhCCCCceEeCCHHHHHHHH
Confidence 999999999999999999999998887666542110 001011 00123799999999999999999999999999
Q ss_pred HHHHhC----CCcEEEEEEeCC
Q 048725 617 QTMLDT----PGPYLLDVIFPH 634 (661)
Q Consensus 617 ~~a~~~----~gp~lIeV~~~~ 634 (661)
+++++. +||+||||++++
T Consensus 547 ~~a~~~~~~~~gp~liev~v~~ 568 (569)
T PRK08327 547 RRALAAVRKGRRSAVLDVIVDR 568 (569)
T ss_pred HHHHHHHhcCCCcEEEEEEccC
Confidence 999876 789999999974
No 47
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=100.00 E-value=3.2e-91 Score=788.83 Aligned_cols=511 Identities=20% Similarity=0.296 Sum_probs=429.6
Q ss_pred cHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHH
Q 048725 89 KGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVS 168 (661)
Q Consensus 89 ~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~ 168 (661)
+++|+|++.|+++||++|||+||+.+++|+++|.+.++|++|.+|||++|+||||||+|+|| ++||++|+|||++|+++
T Consensus 2 t~~~~l~~~L~~~Gv~~vFG~pG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mAdgyar~tg-~gv~~~t~GPG~~n~~~ 80 (539)
T TIGR03393 2 TVGDYLLDRLTDIGIDHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNAAYAADGYARCKG-AAALLTTFGVGELSAIN 80 (539)
T ss_pred cHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhCCCCcEeccCCcccHHHHhhhhhhhcC-ceEEEEecCccHHHHhh
Confidence 78999999999999999999999999999999977667999999999999999999999999 79999999999999999
Q ss_pred HHHHhhhCCCcEEEEecCCCCc----------ccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCC
Q 048725 169 GLADALLDSVPLVAITGQVPRR----------MIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRP 238 (661)
Q Consensus 169 gl~~A~~~~iPll~ItG~~p~~----------~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~ 238 (661)
||++||.+++|||+|+|+.+.. ..+.+.+|+. .++++++|||+..+ +++++++.+++|++.|.+++
T Consensus 81 gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~q~~--~~~~~~itk~~~~~-~~~~~~~~i~~a~~~A~~~~- 156 (539)
T TIGR03393 81 GIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHF--YRMAAEVTVAQAVL-TEQNATAEIDRVITTALRER- 156 (539)
T ss_pred HHHHHhhccCCEEEEECCCCcchhhcCceeeeecCCCchHHH--HHHhhceEEEEEEe-ChhhhHHHHHHHHHHHHhcC-
Confidence 9999999999999999998863 2344456653 68999999998855 78999999999999999876
Q ss_pred ceEEEEeccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhC
Q 048725 239 GPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTG 316 (661)
Q Consensus 239 GPV~I~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg 316 (661)
|||||+||.|++.+++.... .....+....+....++.+++++++|++||||+|++|+|+. ++.+++.+|+|+++
T Consensus 157 gPv~l~iP~Dv~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~a~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~ 233 (539)
T TIGR03393 157 RPGYLMLPVDVAAKAVTPPV---NPLVTHKPAHADSALRAFRDAAENKLAMAKRVSLLADFLALRHGLKHALQKWVKEVP 233 (539)
T ss_pred CCEEEEecccccCCccCCCC---cccCcCCCCCChHHHHHHHHHHHHHHHhCCCCEEEeChhhcccChHHHHHHHHHHhC
Confidence 89999999999887653211 11111000000001123489999999999999999999985 67899999999999
Q ss_pred CCeeecCCCCCCCCCCCCCCCccc-CCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccc-cCCCCeEEEEcCCchhhcc
Q 048725 317 IPVASTLMGLGSFPGTDELSLQML-GMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEA-FASRAKIVHIDIDSAEIGK 394 (661)
Q Consensus 317 ~PV~tt~~gkg~~p~~hpl~lg~~-G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~-~~~~~~vi~Id~d~~~i~~ 394 (661)
+||++|++|||+||++||+++|++ |..+...+++++++||+||++|++++++.++.+.. +. ..++||||+|+..+++
T Consensus 234 ~pv~tt~~gkg~~~~~hpl~lG~~~g~~~~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~-~~~~I~id~~~~~~~~ 312 (539)
T TIGR03393 234 MPHATLLMGKGILDEQQAGFYGTYSGSASTGAVKEAIEGADAVICVGVRFTDTITAGFTHQLT-PEQTIDVQPHAARVGN 312 (539)
T ss_pred CCEEECcccCccccCcCCCeEEEEeCCCCCHHHHHHHhhCCEEEEECCcccccccceeeccCC-cccEEEEcCCeEEECc
Confidence 999999999999999999999997 45667788999999999999999999887766643 43 3689999999999999
Q ss_pred CCCCcceEeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEEEE
Q 048725 395 NKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIIST 474 (661)
Q Consensus 395 ~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~ 474 (661)
++.+++.+ +|++.+|++|++.+.. .|.... ....... ......+++..+++.|++.++++.+++.
T Consensus 313 ~~~~~~~i-~D~~~~l~~l~~~l~~----------~~~~~~-~~~~~~~---~~~~~~l~~~~~~~~l~~~l~~~~iiv~ 377 (539)
T TIGR03393 313 VWFTGIPM-NDAIETLVELCEHAGL----------MWSSSG-AIPFPQP---DESRSALSQENFWQTLQTFLRPGDIILA 377 (539)
T ss_pred eEeCCcCH-HHHHHHHHHHhhhccc----------cccccc-ccCcCCC---CCCCCccCHHHHHHHHHHhcCCCCEEEE
Confidence 98888888 9999999999876632 132110 0000010 1112358999999999999999999999
Q ss_pred cCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEE
Q 048725 475 GVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLL 554 (661)
Q Consensus 475 d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~ 554 (661)
|+|++. |..++++...+++++.+.++|+|||++|+|||+++|+|+++||+++|||||+|++|||+|+++|++|+++||+
T Consensus 378 d~G~~~-~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~EL~Ta~~~~lpi~~vV~ 456 (539)
T TIGR03393 378 DQGTSA-FGAADLRLPADVNFIVQPLWGSIGYTLPAAFGAQTACPNRRVILLIGDGSAQLTIQELGSMLRDKQHPIILVL 456 (539)
T ss_pred ccCchh-hhhhhccCCCCCeEEechhhhhhhhHHHHHHHHHhcCCCCCeEEEEcCcHHHhHHHHHHHHHHcCCCCEEEEE
Confidence 999986 7788999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCC----EeeeCCHHHHHHHHHHHHhCCCcEEEEE
Q 048725 555 NNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIP----GAQVTRKADLRAAIQTMLDTPGPYLLDV 630 (661)
Q Consensus 555 NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~----~~~v~~~~el~~al~~a~~~~gp~lIeV 630 (661)
||++|+++++.+. +. ..+.. ...+||.++|++||++ +.+|++.+||+++|+++++.+||+||||
T Consensus 457 NN~~y~~i~~~~~--~~----~~~~~------~~~~df~~la~a~G~~~~~~~~~v~~~~el~~al~~a~~~~~p~liev 524 (539)
T TIGR03393 457 NNEGYTVERAIHG--AE----QRYND------IALWNWTHLPQALSLDPQSECWRVSEAEQLADVLEKVAAHERLSLIEV 524 (539)
T ss_pred eCCceEEEEeecC--CC----CCcCc------CCCCCHHHHHHHcCCCCccceEEeccHHHHHHHHHHHhccCCeEEEEE
Confidence 9999999854321 10 01111 1127999999999996 8999999999999999999999999999
Q ss_pred EeCCCC
Q 048725 631 IFPHQE 636 (661)
Q Consensus 631 ~~~~~~ 636 (661)
++++++
T Consensus 525 ~i~~~~ 530 (539)
T TIGR03393 525 VLPKAD 530 (539)
T ss_pred EcCccc
Confidence 998765
No 48
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=100.00 E-value=9.5e-91 Score=782.02 Aligned_cols=513 Identities=22% Similarity=0.319 Sum_probs=428.2
Q ss_pred cHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHH
Q 048725 89 KGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVS 168 (661)
Q Consensus 89 ~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~ 168 (661)
+.+|+|++.|+++||++|||+||+++++|+++|.+.++|++|.||||++|+||||||+|+||||+||++|+|||++|+++
T Consensus 1 ~~~~~l~~~L~~~Gv~~vFGvpG~~~~~l~~al~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~ 80 (535)
T TIGR03394 1 KLAEALLRALKDRGAQEMFGIPGDFALPFFKVIEETGILPLHTLSHEPAVGFAADAAARYRGTLGVAAVTYGAGAFNMVN 80 (535)
T ss_pred CHHHHHHHHHHHcCCCEEEECCCcccHHHHHHHhhCCCCeEEcccCcchHHHHHhHHHHhhCCceEEEEecchHHHhhhh
Confidence 46899999999999999999999999999999987655999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCcEEEEecCCCCcccCCCCCCC-----CC-HHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEE
Q 048725 169 GLADALLDSVPLVAITGQVPRRMIGTDAFQE-----TP-IVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVL 242 (661)
Q Consensus 169 gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~-----~~-~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~ 242 (661)
||++||.+++|||+|+|+.++...+++.+|+ +| |.++++++|||+.++.+++++++.+++|++.|+++ +||||
T Consensus 81 gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtk~~~~v~~~~~~~~~~~~A~~~a~~~-~gPv~ 159 (535)
T TIGR03394 81 AIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKEVTCDQAVLDDPATAPAEIARVLGSAREL-SRPVY 159 (535)
T ss_pred HHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhhheEEEEEeCChHHhHHHHHHHHHHHHHC-CCCEE
Confidence 9999999999999999999988888877543 54 78999999999999999999999999999999984 59999
Q ss_pred EEeccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCee
Q 048725 243 IDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVA 320 (661)
Q Consensus 243 I~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~ 320 (661)
|+||.|++.+++.+. . ..+.. .....+.+..+++++++|++||||+|++|+|+. ++.+++++|||++|+||+
T Consensus 160 i~iP~Dv~~~~~~~~---~-~~~~~--~~~~~~~~~~v~~~~~~l~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~~pv~ 233 (535)
T TIGR03394 160 LEIPRDMVNAEVEPV---P-DDPAW--PVDRDALDACADEVLARMRSATSPVMMVCVEVRRYGLEAKVAELAQRLGVPVV 233 (535)
T ss_pred EEechhhccCccCCC---C-CCCCC--CCChHHHHHHHHHHHHHHHhCCCCEEEEChhhcccCcHHHHHHHHHHhCCCEE
Confidence 999999987765321 0 11110 011112356789999999999999999999986 578999999999999999
Q ss_pred ecCCCCCCCCCCCCCCCcc-cCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCc
Q 048725 321 STLMGLGSFPGTDELSLQM-LGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPH 399 (661)
Q Consensus 321 tt~~gkg~~p~~hpl~lg~-~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~ 399 (661)
||++|||+||++||+++|+ .|..++..+++++++|||||+||++++++.+.....+.++.++||||+|+.+++++++.+
T Consensus 234 tT~~gkg~~pe~hpl~~G~~~G~~~~~~~~~~l~~aDliL~iG~~l~~~~~~~~~~~~~~~~~I~id~~~~~~~~~~~~~ 313 (535)
T TIGR03394 234 TTFMGRGLLADAPTPPLGTYLGVAGDAELSRLVEESDGLLLLGVILSDTNFAVSQRKIDLRRTIHAFDRAVTLGYHVYAD 313 (535)
T ss_pred EccccCcCCCCCCccccccccCCCCCHHHHHHHHhCCEEEEECCcccccccccccccCCCCcEEEEeCCEEEECCeeECC
Confidence 9999999999999999995 788899999999999999999999998875543333445679999999999999999999
Q ss_pred ceEeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCCC--cEEEEcCC
Q 048725 400 VSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGE--AIISTGVG 477 (661)
Q Consensus 400 ~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d--~iv~~d~G 477 (661)
+.+ +|+..+|++|++.+.... ...|.....+ ...........+++.++++.|++.++++ .+++.|+|
T Consensus 314 ~~i-~d~~~~L~~l~~~~~~~~------~~~~~~~~~~----~~~~~~~~~~~i~p~~~~~~l~~~l~~~~~~ii~~D~G 382 (535)
T TIGR03394 314 IPL-AGLVDALLALLCGLPPSD------RTTRGKGPHA----YPRGLQADAEPIAPMDIARAVNDRFARHGQMPLAADIG 382 (535)
T ss_pred ccH-HHHHHHHHHhhhcccccc------cccccccccc----cccccCCCCCCcCHHHHHHHHHHHhCCCCCEEEEEccC
Confidence 998 789999988876553210 0111111111 0000011223589999999999999875 46899999
Q ss_pred hhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCC
Q 048725 478 QHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQ 557 (661)
Q Consensus 478 ~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~ 557 (661)
++..|... + ++.+|+.++++|+|||++|+|||+++|.+ +++|+++|||||+|++|||+|++|+|+|+++||+||+
T Consensus 383 ~~~~~~~~-~---~~~~~~~~~~~g~mG~glpaaiGa~lA~~-~r~v~i~GDG~f~m~~~EL~Ta~r~~lpv~~vV~NN~ 457 (535)
T TIGR03394 383 DCLFTAMD-M---DDAGLMAPGYYAGMGFGVPAGIGAQCTSG-KRILTLVGDGAFQMTGWELGNCRRLGIDPIVILFNNA 457 (535)
T ss_pred HHHHHHHh-c---CCCcEECcCccchhhhHHHHHHHHHhCCC-CCeEEEEeChHHHhHHHHHHHHHHcCCCcEEEEEECC
Confidence 98666643 3 36889999999999999999999999986 4568899999999999999999999999999999999
Q ss_pred cchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhC-CCcEEEEEEeCCCC
Q 048725 558 HLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDT-PGPYLLDVIFPHQE 636 (661)
Q Consensus 558 g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~-~gp~lIeV~~~~~~ 636 (661)
+|+|++++|... ....+. .+||+++|++||+++.+|++.+||+++|+++++. ++|.||||++++.+
T Consensus 458 ~y~~~~~~~~~~-----~~~~~~--------~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~~p~lIev~i~~~~ 524 (535)
T TIGR03394 458 SWEMLRVFQPES-----AFNDLD--------DWRFADMAAGMGGDGVRVRTRAELAAALDKAFATRGRFQLIEAMLPRGV 524 (535)
T ss_pred ccceeehhccCC-----CcccCC--------CCCHHHHHHHcCCCceEeCCHHHHHHHHHHHHhcCCCeEEEEEECCccc
Confidence 999987665210 001111 2799999999999999999999999999999985 45899999999877
Q ss_pred C
Q 048725 637 H 637 (661)
Q Consensus 637 ~ 637 (661)
.
T Consensus 525 ~ 525 (535)
T TIGR03394 525 L 525 (535)
T ss_pred C
Confidence 3
No 49
>PRK12474 hypothetical protein; Provisional
Probab=100.00 E-value=2.4e-89 Score=770.05 Aligned_cols=503 Identities=24% Similarity=0.290 Sum_probs=416.0
Q ss_pred CCCCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhH
Q 048725 85 DQPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGAT 164 (661)
Q Consensus 85 ~~~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~ 164 (661)
...++++|+|++.|+++||++|||+||+.+++|+++|.+.++|++|.||||++|+||||||+|+||||+||++|+|||++
T Consensus 2 ~~~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgYaR~tg~~gv~~~t~GpG~~ 81 (518)
T PRK12474 2 GQTMNGADSVVDTLLNCGVEVCFANPGTSEMHFVAALDRVPRMRPVLCLFEGVVTGAADGYGRIAGKPAVTLLHLGPGLA 81 (518)
T ss_pred CcCccHHHHHHHHHHHCCCCEEEECCCcchHHHHHHhhccCCceEEEecchHHHHHHHHHHHHHhCCCEEEEEccchhHh
Confidence 45789999999999999999999999999999999997666799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEE
Q 048725 165 NLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLID 244 (661)
Q Consensus 165 N~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~ 244 (661)
|+++||++||.+++|||+|+|+.++...+.+.+|+.|+..+++++|||++++.++++++++++|||+.|+++|+|||||+
T Consensus 82 N~~~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~ 161 (518)
T PRK12474 82 NGLANLHNARRAASPIVNIVGDHAVEHLQYDAPLTSDIDGFARPVSRWVHRSASAGAVDSDVARAVQAAQSAPGGIATLI 161 (518)
T ss_pred HhHHHHHHHhhcCCCEEEEeccCchhhcCCCCccccCHHHhhhcccceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 99999999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred eccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeec
Q 048725 245 VPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVAST 322 (661)
Q Consensus 245 iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt 322 (661)
||.|++.++..... ...... .+..++++.+++++++|.+||||||++|+|+. ++.+++++|+|++|+||++|
T Consensus 162 iP~Dv~~~~~~~~~---~~~~~~---~~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~g~PV~~t 235 (518)
T PRK12474 162 MPADVAWNEAAYAA---QPLRGI---GPAPVAAETVERIAALLRNGKKSALLLRGSALRGAPLEAAGRIQAKTGVRLYCD 235 (518)
T ss_pred echhhhcccccCCc---CCCCCC---CCCCCCHHHHHHHHHHHHcCCCcEEEECCccchhhHHHHHHHHHHHHCCCEEEe
Confidence 99999876542110 011110 12235778899999999999999999999986 46899999999999999975
Q ss_pred ------CCCCCCCCC-CCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCC--cC-Cccc-ccCCCCeEEEEcCCchh
Q 048725 323 ------LMGLGSFPG-TDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDR--VT-GKLE-AFASRAKIVHIDIDSAE 391 (661)
Q Consensus 323 ------~~gkg~~p~-~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~--~t-~~~~-~~~~~~~vi~Id~d~~~ 391 (661)
++|||.+|+ +||++. ....+++++||+||++|++++.. .+ ..+. .+....++++++..
T Consensus 236 ~~~~~~~~gkg~~~~~~~~~~~--------~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--- 304 (518)
T PRK12474 236 TFAPRIERGAGRVPIERIPYFH--------EQITAFLKDVEQLVLVGAKPPVSFFAYPGKPSWGAPPGCEIVYLAQP--- 304 (518)
T ss_pred cCcccccCCCCCCCCcccccch--------HHHHHHHhhCCEEEEECCCCCccccccCCCccccCCCCCEEEEECCC---
Confidence 369999995 567652 24557899999999999996321 11 1121 23345678887642
Q ss_pred hccCCCCcceEeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcE
Q 048725 392 IGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAI 471 (661)
Q Consensus 392 i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~i 471 (661)
.+|++.+|++|.+.+..... |..+. ..... .....++++.++++.|++.+++|.|
T Consensus 305 -----------~~d~~~~l~~L~~~l~~~~~--------~~~~~---~~~~~---~~~~~~i~~~~~~~~l~~~l~~d~i 359 (518)
T PRK12474 305 -----------DEDLAQALQDLADAVDAPAE--------PAART---PLALP---ALPKGALNSLGVAQLIAHRTPDQAI 359 (518)
T ss_pred -----------CcCHHHHHHHHHHhcccccc--------ccccc---ccccc---CCCCCCcCHHHHHHHHHHHCCCCeE
Confidence 16999999999887653210 11000 00000 0122358999999999999999999
Q ss_pred EEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEE
Q 048725 472 ISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKI 551 (661)
Q Consensus 472 v~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~i 551 (661)
++.|+|++..|..++++...|++|+.+.+ |+|||++|+|||+++|+|+++||+|+|||||+|++|||+|++|+++|+++
T Consensus 360 v~~d~g~~~~~~~~~~~~~~p~~~~~~~~-gsmG~glpaAiGa~lA~p~r~vv~i~GDG~f~m~~qEL~Ta~r~~lpv~i 438 (518)
T PRK12474 360 YADEALTSGLFFDMSYDRARPHTHLPLTG-GSIGQGLPLAAGAAVAAPDRKVVCPQGDGGAAYTMQALWTMARENLDVTV 438 (518)
T ss_pred EEECCCcCHHHHHHhhcccCCCCEEccCC-CccCccHHHHHHHHHHCCCCcEEEEEcCchhcchHHHHHHHHHHCCCcEE
Confidence 99999999999999999989999997755 99999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCcchhHHHHHHHhhccccccc-ccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEE
Q 048725 552 LLLNNQHLGMVMQWEDRFYKANRAHT-YLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDV 630 (661)
Q Consensus 552 vV~NN~g~g~~~~~~~~~~~~~~~~~-~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV 630 (661)
||+||++|+++++.++.......... ..++. .....+||.++|++||+++.+|++++||.++|+++++.++|+||||
T Consensus 439 iV~NN~~y~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~lA~a~G~~~~rv~~~~eL~~al~~a~~~~~p~liev 516 (518)
T PRK12474 439 VIFANRSYAILNGELQRVGAQGAGRNALSMLD--LHNPELNWMKIAEGLGVEASRATTAEEFSAQYAAAMAQRGPRLIEA 516 (518)
T ss_pred EEEcCCcchHHHHHHHhhcCCCCCcccccccc--CCCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHcCCCCEEEEE
Confidence 99999999999866543211000000 00000 0011269999999999999999999999999999999999999999
Q ss_pred Ee
Q 048725 631 IF 632 (661)
Q Consensus 631 ~~ 632 (661)
++
T Consensus 517 ~~ 518 (518)
T PRK12474 517 MI 518 (518)
T ss_pred EC
Confidence 75
No 50
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=100.00 E-value=3.1e-89 Score=771.69 Aligned_cols=515 Identities=24% Similarity=0.348 Sum_probs=439.0
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNL 166 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~ 166 (661)
.++++|+|++.|+++||++|||+||+++++|+++|.+ +|++|.|+||++|+||||||+|+||+++||++|+|||++|+
T Consensus 11 ~~~~a~~l~~~L~~~GV~~vFgiPG~~~~~l~dal~~--~i~~i~~~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~~N~ 88 (530)
T PRK07092 11 MTTVRDATIDLLRRFGITTVFGNPGSTELPFLRDFPD--DFRYVLGLQEAVVVGMADGYAQATGNAAFVNLHSAAGVGNA 88 (530)
T ss_pred cCcHHHHHHHHHHHcCCCEEEeCCCCcchHHHHHHhh--cCCEEEEccHHHHHHHHHHHHHHhCCceEEEeccCchHHHH
Confidence 4789999999999999999999999999999999964 59999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCCcccCCCCCCC-CCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEe
Q 048725 167 VSGLADALLDSVPLVAITGQVPRRMIGTDAFQE-TPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDV 245 (661)
Q Consensus 167 l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~-~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~i 245 (661)
++||++||.+++|||+|+|+.+....+.+.+|+ +|+.++++++|||+.++.+++++++.+++||+.|+++|+|||||+|
T Consensus 89 ~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~i 168 (530)
T PRK07092 89 MGNLFTAFKNHTPLVITAGQQARSILPFEPFLAAVQAAELPKPYVKWSIEPARAEDVPAAIARAYHIAMQPPRGPVFVSI 168 (530)
T ss_pred HHHHHHHhhcCCCEEEEecCCcccccCccchhcccCHHHhhcccccceeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEc
Confidence 999999999999999999999998888888755 7999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeecC
Q 048725 246 PKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTL 323 (661)
Q Consensus 246 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt~ 323 (661)
|.|++.++.... ... . ......++++.+++++++|.+||||+|++|+|+. ++.+++.+|+|++|+||++|+
T Consensus 169 P~d~~~~~~~~~-----~~~-~-~~~~~~~~~~~~~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~lg~pV~~t~ 241 (530)
T PRK07092 169 PYDDWDQPAEPL-----PAR-T-VSSAVRPDPAALARLGDALDAARRPALVVGPAVDRAGAWDDAVRLAERHRAPVWVAP 241 (530)
T ss_pred cHHHhhCccccc-----ccC-C-CCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCcchhhhHHHHHHHHHHHCCcEEEec
Confidence 999987764320 000 0 1112245678899999999999999999999986 567899999999999999886
Q ss_pred C-CCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcC-CcccccCCCCeEEEEcCCchhhccCCCCcce
Q 048725 324 M-GLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVT-GKLEAFASRAKIVHIDIDSAEIGKNKQPHVS 401 (661)
Q Consensus 324 ~-gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t-~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~ 401 (661)
+ +||+||++||+++|++|.. ....++++++||+||+||+++.+..+ +....|.++.++||||+|+..+++ ++.++.
T Consensus 242 ~~~kg~~~~~hp~~~G~~g~~-~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~-~~~~~~ 319 (530)
T PRK07092 242 MSGRCSFPEDHPLFAGFLPAS-REKISALLDGHDLVLVIGAPVFTYHVEGPGPHLPEGAELVQLTDDPGEAAW-APMGDA 319 (530)
T ss_pred CCCcCcCCCCCccccCcCCcc-HHHHHHHHhhCCEEEEECCcccccccCCccccCCCCCeEEEEeCChHHhcC-CCCCCc
Confidence 5 7999999999999998753 45667889999999999998544433 222345556789999999999876 467899
Q ss_pred EeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEEEEcCChhHH
Q 048725 402 VCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQM 481 (661)
Q Consensus 402 i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~ 481 (661)
+.+|++.+|++|++.+..... ..|..+ . ..... .....++++..+++.|++.++++.+++.|+|++..
T Consensus 320 i~~d~~~~l~~L~~~l~~~~~------~~~~~~--~---~~~~~-~~~~~~l~~~~~~~~l~~~l~~~~ivv~d~g~~~~ 387 (530)
T PRK07092 320 IVGDIRLALRDLLALLPPSAR------PAPPAR--P---MPPPA-PAPGEPLSVAFVLQTLAALRPADAIVVEEAPSTRP 387 (530)
T ss_pred ccCCHHHHHHHHHHhhccccc------cchhhh--h---ccccc-cCCCCCcCHHHHHHHHHHhCCCCeEEEeCCCccHH
Confidence 999999999999998753211 111110 0 00000 11234588999999999999999999999999999
Q ss_pred HHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchh
Q 048725 482 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGM 561 (661)
Q Consensus 482 ~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~ 561 (661)
|..++++...+++|+.+. +|+||+++|+|+|++++.|+++|||++|||+|+|+++||+|++++++|+++||+||++|++
T Consensus 388 ~~~~~~~~~~~~~~~~~~-~g~mG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~~~lp~~~vv~NN~~~~~ 466 (530)
T PRK07092 388 AMQEHLPMRRQGSFYTMA-SGGLGYGLPAAVGVALAQPGRRVIGLIGDGSAMYSIQALWSAAQLKLPVTFVILNNGRYGA 466 (530)
T ss_pred HHHHhcCcCCCCceEccC-CCcccchHHHHHHHHHhCCCCeEEEEEeCchHhhhHHHHHHHHHhCCCcEEEEEeChHHHH
Confidence 999999998999998764 4999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeC
Q 048725 562 VMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFP 633 (661)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~ 633 (661)
+++.++.++... ..+. ....+||.++|++||+++++|++.+||+++++++++.++|.||||++|
T Consensus 467 ~~~~~~~~~~~~----~~~~----~~~~~d~~~~a~~~G~~~~~v~~~~~l~~al~~a~~~~~p~liev~~d 530 (530)
T PRK07092 467 LRWFAPVFGVRD----VPGL----DLPGLDFVALARGYGCEAVRVSDAAELADALARALAADGPVLVEVEVA 530 (530)
T ss_pred HHHHHHhhCCCC----CCCC----CCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEcC
Confidence 987665433211 1111 112379999999999999999999999999999999999999999985
No 51
>PRK07586 hypothetical protein; Validated
Probab=100.00 E-value=5.4e-89 Score=767.82 Aligned_cols=499 Identities=25% Similarity=0.316 Sum_probs=415.4
Q ss_pred CcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 048725 88 RKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLV 167 (661)
Q Consensus 88 ~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l 167 (661)
|+|+|+|++.|+++||+||||+||+.+++|+++|.++++|++|.||||++|+||||||||+||||+||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFG~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~ 80 (514)
T PRK07586 1 MNGAESLVRTLVDGGVDVCFANPGTSEMHFVAALDRVPGMRCVLGLFEGVATGAADGYARMAGKPAATLLHLGPGLANGL 80 (514)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCCCchHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHHH
Confidence 68999999999999999999999999999999998766799999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 048725 168 SGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPK 247 (661)
Q Consensus 168 ~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~ 247 (661)
+||++||.+++|||+|+|+.+....+.+.+|++|+.++++++|||++++.+++++++.+++||+.|+++|+|||||+||.
T Consensus 81 ~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 160 (514)
T PRK07586 81 ANLHNARRARTPIVNIVGDHATYHRKYDAPLTSDIEALARPVSGWVRRSESAADVAADAAAAVAAARGAPGQVATLILPA 160 (514)
T ss_pred HHHHHHHhcCCCEEEEecCCchhccCCCcccccchhhhhccccceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 99999999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeecC--
Q 048725 248 DIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTL-- 323 (661)
Q Consensus 248 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt~-- 323 (661)
|++.++.... .. ..+ ......++++.+++++++|.+||||+|++|+|+. ++.+++.+|||++|+||+++.
T Consensus 161 Dv~~~~~~~~--~~-~~~---~~~~~~~~~~~v~~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~l~~pV~t~~~~ 234 (514)
T PRK07586 161 DVAWSEGGPP--AP-PPP---APAPAAVDPAAVEAAAAALRSGEPTVLLLGGRALRERGLAAAARIAAATGARLLAETFP 234 (514)
T ss_pred chhccccccc--cc-cCC---CCCCCCCCHHHHHHHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHHCCCEEecccc
Confidence 9987654211 11 011 0112245788999999999999999999999996 567999999999999999864
Q ss_pred ----CCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCc---CCcccc-cCCCCeEEEEcCCchhhccC
Q 048725 324 ----MGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRV---TGKLEA-FASRAKIVHIDIDSAEIGKN 395 (661)
Q Consensus 324 ----~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~---t~~~~~-~~~~~~vi~Id~d~~~i~~~ 395 (661)
+|||.+|++|+.+.+ ..+++++++|||||++|+++.... ...... +..+.++++++.
T Consensus 235 ~~~~~gkg~~~~~~~~~~~-------~~~~~~~~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 299 (514)
T PRK07586 235 ARMERGAGRPAVERLPYFA-------EQALAQLAGVRHLVLVGAKAPVAFFAYPGKPSRLVPEGCEVHTLAG-------- 299 (514)
T ss_pred cccccCCCCCCcccccchH-------HHHHHHHhcCCEEEEECCCCcccccccCCCccccCCCCceEEEECC--------
Confidence 599999988876543 456778999999999999963211 111111 122334444431
Q ss_pred CCCcceEeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEEEEc
Q 048725 396 KQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTG 475 (661)
Q Consensus 396 ~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d 475 (661)
..+|++.+|++|++.++.... . . +..+.. .. .....++++.++++.|++.++++.|++.|
T Consensus 300 ------~~~d~~~~l~~L~~~l~~~~~----~-~----~~~~~~--~~---~~~~~~i~~~~~~~~l~~~l~~~~ivv~d 359 (514)
T PRK07586 300 ------PGEDAAAALEALADALGAKPA----A-P----PLAAPA--RP---PLPTGALTPEAIAQVIAALLPENAIVVDE 359 (514)
T ss_pred ------CcccHHHHHHHHHHhhccccc----c-h----hhhhcc--cc---CCCCCCcCHHHHHHHHHHhCCCCeEEEeC
Confidence 137999999999987753211 0 0 111110 00 11234589999999999999999999999
Q ss_pred CChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEe
Q 048725 476 VGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLN 555 (661)
Q Consensus 476 ~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~N 555 (661)
+|++.+|..++++...|++|+++.+ |+|||++|+|||+++|+|+++||+++|||||+|++|||+|++++++|+++||+|
T Consensus 360 ~g~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~lpaaiGa~lA~p~r~Vv~i~GDGsf~m~~~EL~Ta~~~~lpv~ivV~N 438 (514)
T PRK07586 360 SITSGRGFFPATAGAAPHDWLTLTG-GAIGQGLPLATGAAVACPDRKVLALQGDGSAMYTIQALWTQARENLDVTTVIFA 438 (514)
T ss_pred CCcCHHHHHHhccccCCCCEEccCC-cccccHHHHHHHHHHhCCCCeEEEEEechHHHhHHHHHHHHHHcCCCCEEEEEe
Confidence 9999999999999999999998776 999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhHHHHHHHhhcccc---cccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEe
Q 048725 556 NQHLGMVMQWEDRFYKANR---AHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIF 632 (661)
Q Consensus 556 N~g~g~~~~~~~~~~~~~~---~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~ 632 (661)
|++|+++++.|+..+.... ...+... ....+||.++|++||+++.+|++.+||+++|+++++.++|.||||++
T Consensus 439 N~~y~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~d~~~lA~a~G~~~~~V~~~~el~~al~~a~~~~~p~liev~~ 514 (514)
T PRK07586 439 NRAYAILRGELARVGAGNPGPRALDMLDL----DDPDLDWVALAEGMGVPARRVTTAEEFADALAAALAEPGPHLIEAVV 514 (514)
T ss_pred CchhHHHHHHHHHhcCCCCCccccccccC----CCCCCCHHHHHHHCCCcEEEeCCHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 9999999887755432110 0001000 00137999999999999999999999999999999999999999975
No 52
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=9.9e-88 Score=695.20 Aligned_cols=540 Identities=29% Similarity=0.427 Sum_probs=455.0
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNL 166 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~ 166 (661)
.+.|++.+++.|+.+||+++||+-|.++.+|..+.++. +|++|.||||++|+|+|++|++.|||||||++++|||++|+
T Consensus 13 ~~~g~~~vA~~Lk~~gVe~iFgiVGipV~el~~aaqal-GIk~I~~RnEqaA~yAA~A~gyLt~kpGV~lVvsGPGl~ha 91 (571)
T KOG1185|consen 13 SRHGGELVAAVLKAQGVEYIFGIVGIPVIELAVAAQAL-GIKFIGTRNEQAAVYAASAYGYLTGKPGVLLVVSGPGLTHA 91 (571)
T ss_pred cccHHHHHHHHHHHcCceEEEEEeccchHHHHHHHHHc-CCeEeecccHHHHHHHHHHhhhhcCCCeEEEEecCChHHHH
Confidence 57899999999999999999999999999999999987 69999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEec
Q 048725 167 VSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVP 246 (661)
Q Consensus 167 l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP 246 (661)
++|++||+.+.+|||+|.|..+..+.++++|||+||.+++++++|++.++.++++|+..+++|++.|++|+|||||+++|
T Consensus 92 l~gv~NA~~n~wPll~IgGsa~~~~~~rGafQe~dQvel~rp~~K~~~r~~~~~~I~~~i~kA~r~a~~G~PG~~yvD~P 171 (571)
T KOG1185|consen 92 LAGVANAQMNCWPLLLIGGSASTLLENRGAFQELDQVELFRPLCKFVARPTSVRDIPPTIRKAVRAAMSGRPGPVYVDLP 171 (571)
T ss_pred HHHhhhhhhccCcEEEEecccchhhhcccccccccHHhhhhhhhhhccCCCChhhccHHHHHHHHHHhcCCCCceEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhh-hccC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeec
Q 048725 247 KDIQQ-QLAV-PNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVAST 322 (661)
Q Consensus 247 ~dv~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt 322 (661)
.|+.. +... .......+.+..+...-..|++..+++++++|++||||+|++|.|+. .+.++|++|.|.+|+|++-|
T Consensus 172 ~d~v~~~~~~e~~~~~~~p~~~~p~P~i~~p~~s~i~~av~llk~AKrPLlvvGkgAa~~~ae~~l~~~Ve~~glPflpt 251 (571)
T KOG1185|consen 172 ADVVLPSKMVEKEIDVSEPQPPIPLPPIPGPPPSQIQKAVQLLKSAKRPLLVVGKGAAYAPAEDQLRKFVETTGLPFLPT 251 (571)
T ss_pred cceeeeecccccccccCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEecccccCccHHHHHHHHHhcCCCcccC
Confidence 99532 2211 11000001111011111246889999999999999999999999985 46799999999999999999
Q ss_pred CCCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCc-ccccCCCCeEEEEcCCchhhccC-CCCcc
Q 048725 323 LMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGK-LEAFASRAKIVHIDIDSAEIGKN-KQPHV 400 (661)
Q Consensus 323 ~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~-~~~~~~~~~vi~Id~d~~~i~~~-~~~~~ 400 (661)
+||||+.|++||++.+. ....++++||+||++|.++++....+ -..|.++.|+||||+++++++.| ..+++
T Consensus 252 pMgKGll~d~hPl~v~~-------aRS~ALk~ADvvll~GarlnwiLhfG~~Pk~~kd~KfIqvd~n~Eel~~n~~k~~v 324 (571)
T KOG1185|consen 252 PMGKGLLPDNHPLNVSS-------ARSLALKKADVVLLAGARLNWILHFGLPPKWSKDVKFIQVDINPEELGNNFVKPDV 324 (571)
T ss_pred cccccCCCCCCchhhhH-------HHHHHHhhCCEEEEecceeeEEEecCCCCccCCCceEEEEeCCHHHHhcccCCCCc
Confidence 99999999999998753 34568999999999999999886543 35688899999999999999998 78899
Q ss_pred eEeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCC----cCCCCCCCChHHHHHHHhhhcC-CCcEEEEc
Q 048725 401 SVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLS----FKTFEESIPPQYAIQVLDELTN-GEAIISTG 475 (661)
Q Consensus 401 ~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~----~~~~~~~i~~~~~~~~l~~~l~-~d~iv~~d 475 (661)
.|.+|++.++.+|.+.+...+.... ....|.+++++..++.... ......++++..+++.+++.++ +|.|++++
T Consensus 325 ~i~gDig~~~~~L~e~l~~~~~~~~-~s~~w~k~Lrek~~~ne~~~~~~~~~~~~pLN~~~~~~~vre~L~~~d~ilVsE 403 (571)
T KOG1185|consen 325 AIQGDIGLFVLQLVEELQDQPWTWG-PSTDWVKELREKDKQNEAAVEEKAAKKSTPLNYYQVLQTVRELLPNDDTILVSE 403 (571)
T ss_pred eeeecHHHHHHHHHHHhcCCCcccC-CchhHHHHHHHHHHhhHHHHHHHhhccCCCCcHHHHHHHHHHhcCCCCcEEEec
Confidence 9999999999999999976543211 1237888887765433211 1123345899999999999999 88899999
Q ss_pred CChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEe
Q 048725 476 VGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLN 555 (661)
Q Consensus 476 ~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~N 555 (661)
.++..-.+...+..+.|++++..+.||+||.|+++|||+|+++|+++|+|+-||++|.|+.+|++|++||+||+++||+|
T Consensus 404 Gantmdigr~~l~~~~Pr~rLDaGtfgTMGVG~Gfalaaa~~~P~~~V~~veGDsaFGfSaME~ET~vR~~Lpvv~vV~N 483 (571)
T KOG1185|consen 404 GANTMDIGRTLLPPRGPRRRLDAGTFGTMGVGLGFALAAALAAPDRKVVCVEGDSAFGFSAMELETFVRYKLPVVIVVGN 483 (571)
T ss_pred CCcchhhhhhhccCCCcccccCCccccccccchhHHHHHHhhCCCCeEEEEecCcccCcchhhHHHHHHhcCCeEEEEec
Confidence 88877778888888999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCc-chhHHH-HHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCC-CcEEEEEEe
Q 048725 556 NQH-LGMVMQ-WEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTP-GPYLLDVIF 632 (661)
Q Consensus 556 N~g-~g~~~~-~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~-gp~lIeV~~ 632 (661)
|+| ||.-.. +++-..... .+..|........+|.+++++||.+++.|++++||..+++++.+.. +|+||+|++
T Consensus 484 N~Giyg~d~~~~~~I~e~~~----~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~t~~el~~~l~~a~q~~~~psvINVlI 559 (571)
T KOG1185|consen 484 NNGIYGLDDDGWKQISEQDP----TLDLPPTALLANTRYDKVAKAFGGKGYFVSTVEELLAALQQACQDTDKPSVINVLI 559 (571)
T ss_pred CCcccccCcccHHHHhhcCc----ccCCCcccccccccHHHHHHHcCCCceeeCCHHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 765 554322 221111110 1112222222346999999999999999999999999999999865 999999999
Q ss_pred CCCCCcC
Q 048725 633 PHQEHVL 639 (661)
Q Consensus 633 ~~~~~~~ 639 (661)
++.+...
T Consensus 560 ~p~~~rk 566 (571)
T KOG1185|consen 560 GPTAFRK 566 (571)
T ss_pred ccccccc
Confidence 9887543
No 53
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=100.00 E-value=3.3e-89 Score=778.47 Aligned_cols=528 Identities=19% Similarity=0.207 Sum_probs=430.7
Q ss_pred CcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 048725 88 RKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLV 167 (661)
Q Consensus 88 ~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l 167 (661)
++++++|++.|+++||++|||+||+++++|+++|.++++|++|.|+||++|+|||+||+|+||+|+||++|+|||++|++
T Consensus 9 ~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~~l~~~~~i~~v~~~hE~~A~~aAdgyar~tg~~~v~~vt~GpG~~N~l 88 (568)
T PRK07449 9 TLWAAVILEELTRLGVRHVVIAPGSRSTPLTLAAAEHPRLRLHTHFDERSAGFLALGLAKASKRPVAVIVTSGTAVANLY 88 (568)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHhCCCcEEEeecCcccHHHHHHHHHHhhCCCEEEEECCccHHHhhh
Confidence 67999999999999999999999999999999997766799999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCc--CcHHHHHHHHHHH---hhcCCCceEE
Q 048725 168 SGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDV--DDIPRIVREAFLL---ATSGRPGPVL 242 (661)
Q Consensus 168 ~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~--~~i~~~i~~A~~~---a~s~~~GPV~ 242 (661)
+||++||.+++|||+|+|+++....+++.+|++||.++++++|++.....+. +.++..++++++. |.++++||||
T Consensus 89 ~~i~~A~~~~~Pvl~IsG~~~~~~~~~~~~q~~d~~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~~~~~GPV~ 168 (568)
T PRK07449 89 PAVIEAGLTGVPLIVLTADRPPELRDCGANQAIDQLGLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQTLQAGPVH 168 (568)
T ss_pred HHHHHHhhcCCcEEEEECCCCHHHhcCCCCceecHhhHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 9999999999999999999999988999999999999999999777665443 3344444444444 8889999999
Q ss_pred EEeccchhhhccCCCCCC-CC--CCCCCCC---CCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCccchHHHHHHHHHHhC
Q 048725 243 IDVPKDIQQQLAVPNWNQ-PI--KLPGYMS---RLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTG 316 (661)
Q Consensus 243 I~iP~dv~~~~~~~~~~~-~~--~~~~~~~---~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~~a~~~l~~lae~lg 316 (661)
|+||.|++.+........ +. ....... ..+..+++..+++++++|.+ |||+|++|+|+..+.+++.+|+|++|
T Consensus 169 i~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-krPvii~G~g~~~~~~~l~~lae~~g 247 (568)
T PRK07449 169 INCPFREPLYPDDDDDTGSPWLAPLGDWWQDDWLRQTVQPEVTSQRDWDIWRQ-KRGVVIAGRLSAEEGQAIAALAQLLG 247 (568)
T ss_pred EeCCCCCCCCCCCcccccccccccccccccccccccccCccccchhhhhhhcc-CCeEEEECCCChHHHHHHHHHHHHCC
Confidence 999999864432100000 00 0000000 00122455678999999988 99999999999877799999999999
Q ss_pred CCeeecCCCCCCCCCCCCCCCcccCCC-CcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccC
Q 048725 317 IPVASTLMGLGSFPGTDELSLQMLGMH-GTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKN 395 (661)
Q Consensus 317 ~PV~tt~~gkg~~p~~hpl~lg~~G~~-g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~ 395 (661)
+||++++++|+.+|++||+++|++|.. +...+++++++||+||++|+++++..+..|.. ....++||||.|+..++++
T Consensus 248 ~PV~tt~~~~~~~~~~hp~~~G~~g~~~~~~~~~~~l~~aD~vl~vG~~l~~~~~~~~~~-~~~~~~i~id~d~~~~~~~ 326 (568)
T PRK07449 248 WPLLADPLSPRNYAPLHPQPIPCYDLWLRNPKAAEELLQPDIVIQFGSPPTSKRLLQWLA-DCEPEYWVVDPGPGRLDPA 326 (568)
T ss_pred CeEEEecCCCCCCCCCCccccchHHHHhcCchhhhhcCCCCEEEEeCCCCCchhHHHHHh-cCCCCEEEECCCCCcCCCC
Confidence 999999999999999999999998754 66677888999999999999997654443322 1234899999999999999
Q ss_pred CCCcceEeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCcC--CCCCCCChHHHHHHHhhhcCCCcEEE
Q 048725 396 KQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFK--TFEESIPPQYAIQVLDELTNGEAIIS 473 (661)
Q Consensus 396 ~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~--~~~~~i~~~~~~~~l~~~l~~d~iv~ 473 (661)
+..++.+.+|++.+|++ ... . ....|.++++..++++..... .....+++.++++.|++.++++.+++
T Consensus 327 ~~~~~~i~~d~~~~l~~-~~~---~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iv~ 396 (568)
T PRK07449 327 HHATRRLTASVATWLEA-HPA---E------KRKPWLQEWQALNEKAREAVREQLAEDTFTEAKVAAALADLLPEGGQLF 396 (568)
T ss_pred CCceEEEEEcHHHHHHh-ccc---c------cchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHhCCCCCeEE
Confidence 99999999999999988 221 1 123455444333222110000 01245889999999999999999999
Q ss_pred EcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEE
Q 048725 474 TGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILL 553 (661)
Q Consensus 474 ~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV 553 (661)
.|.|++..|..+++....+.+++.+.++++|||++|+|||++++ |+++||+|+|||||+|+++||+|++++++|+++||
T Consensus 397 ~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~lpaaiGaala-~~~~vv~i~GDGsf~~~~~eL~Ta~r~~l~i~ivV 475 (568)
T PRK07449 397 VGNSLPVRDVDAFGQLPDGYPVYSNRGASGIDGLLSTAAGVARA-SAKPTVALIGDLSFLHDLNGLLLLKQVPAPLTIVV 475 (568)
T ss_pred EECcHHHHHHHHccCcCCCceEEecCCccchhhHHHHHHHHHhc-CCCCEEEEechHHhhcCcHHHHhhcccCCCeEEEE
Confidence 99998888988888888888999999999999999999999999 89999999999999999999999999999999999
Q ss_pred EeCCcchhHHHHH---HHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEE
Q 048725 554 LNNQHLGMVMQWE---DRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDV 630 (661)
Q Consensus 554 ~NN~g~g~~~~~~---~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV 630 (661)
+||++|++++..+ +..+. ..+++.+. .+||+++|++||+++++|++++||+++|+++++.++|+||||
T Consensus 476 lNN~g~~~~~~~~~~~~~~~~----~~~~~~~~-----~~df~~lA~a~G~~~~~V~~~~eL~~al~~a~~~~~p~lIev 546 (568)
T PRK07449 476 VNNNGGGIFSLLPQPEEEPVF----ERFFGTPH-----GVDFAHAAAMYGLEYHRPETWAELEEALADALPTPGLTVIEV 546 (568)
T ss_pred EECCCCccccCCCCCCCcchh----hHhhcCCC-----CCCHHHHHHHcCCCccCCCCHHHHHHHHHHHhcCCCCEEEEE
Confidence 9999999753321 11110 11222211 279999999999999999999999999999999999999999
Q ss_pred EeCCCCC
Q 048725 631 IFPHQEH 637 (661)
Q Consensus 631 ~~~~~~~ 637 (661)
++++.+.
T Consensus 547 ~id~~~~ 553 (568)
T PRK07449 547 KTNRSQG 553 (568)
T ss_pred eCChhhh
Confidence 9987663
No 54
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=100.00 E-value=8e-83 Score=789.66 Aligned_cols=551 Identities=22% Similarity=0.266 Sum_probs=440.3
Q ss_pred CCCccccccCCCCCCCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCc
Q 048725 73 SPETNFSSRFAPDQPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKP 152 (661)
Q Consensus 73 ~~~~~~~~~~~~~~~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~ 152 (661)
...++|++.|++. ...++++|++.|+++||++|||+||+++++|++++.++++|++|.++||++|+|||+||||+||||
T Consensus 287 ~~~~~~~~~~~~~-~~~~a~~lv~~L~~~GV~~vFg~PG~~~~pL~dAl~~~~~i~~i~~rhErsAafmAdGyAR~Tgkp 365 (1655)
T PLN02980 287 GEVSNFLKDYANI-NAVWASLIIEECTRLGLTYFCVAPGSRSSPLAIAASNHPLTTCIACFDERSLAFHALGYARGSLKP 365 (1655)
T ss_pred cchhhHhHhCCCH-HHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHhCCCCeEEeccCcchHHHHHHHHHHHhCCC
Confidence 3446788888873 477999999999999999999999999999999997766799999999999999999999999999
Q ss_pred EEEEEccchhhHHHHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcH------HHHH
Q 048725 153 GICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDI------PRIV 226 (661)
Q Consensus 153 gv~~~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i------~~~i 226 (661)
|||++|+|||++|+++||++|+.+++|||+||||+|.+..+++++|++||..+++++|||++++.+++++ ++.+
T Consensus 366 gV~i~TsGPG~tN~l~av~eA~~d~vPlLvItgd~p~~~~~~ga~Q~iDq~~lf~pvtK~s~~v~~p~~~~~~~~l~~~v 445 (1655)
T PLN02980 366 AVVITSSGTAVSNLLPAVVEASQDFVPLLLLTADRPPELQDAGANQAINQVNHFGSFVRFFFNLPPPTDLIPARMVLTTL 445 (1655)
T ss_pred EEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEeCCCCHHHhcCCCCcccchhhHHHhhhheeecCCCccchhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999983 5999
Q ss_pred HHHHHHhhcCCCceEEEEeccchhhhccCCCCC-----------CC-CCCCCCC--CC-CCCCCCHHHHHHHHHHHHhCC
Q 048725 227 REAFLLATSGRPGPVLIDVPKDIQQQLAVPNWN-----------QP-IKLPGYM--SR-LPKEPSEVHLEQIVRLISESK 291 (661)
Q Consensus 227 ~~A~~~a~s~~~GPV~I~iP~dv~~~~~~~~~~-----------~~-~~~~~~~--~~-~~~~~~~~~l~~~~~~L~~Ak 291 (661)
++|++.|+++|+|||||+||+|.........+. .. ....... .. ....++.+.+++++++|.+||
T Consensus 446 ~~A~~~A~s~rpGPVhL~iP~~~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~Ak 525 (1655)
T PLN02980 446 DSAVHWATSSPCGPVHINCPFREPLDGSPTNWMSSCLKGLDMWMSNAEPFTKYIQMQSSKADGDTTGQITEVLEVIQEAK 525 (1655)
T ss_pred HHHHHHHhCCCCCCEEEECccCCccccccccccccccccchhcccCCCccccccccccccccccchhhHHHHHHHHHhCC
Confidence 999999999999999999997643221110000 00 0000000 00 011235678999999999999
Q ss_pred CcEEEEcCCccc-hHHHHHHHHHHhCCCeeecCC-CC------CCCCC--CCCCCCcccCCCCcHHHHHhhhcCCEEEEe
Q 048725 292 KPVLYVGGGCLN-SSEELRKFVELTGIPVASTLM-GL------GSFPG--TDELSLQMLGMHGTVYANYAVDKSDLLLAF 361 (661)
Q Consensus 292 rPvIv~G~g~~~-a~~~l~~lae~lg~PV~tt~~-gk------g~~p~--~hpl~lg~~G~~g~~~a~~~l~~aDlvL~v 361 (661)
||+||+|+|+.. ...++.+|||++|+||++|++ |+ |.||+ +||+++|++|.......+..++++|+||+|
T Consensus 526 RPvIvaG~G~~~~~a~~~~~LAe~l~~PV~tt~~sg~~~~~~~g~ipe~~~~pl~~g~~g~~~~~~~~~~~~~aDlVl~i 605 (1655)
T PLN02980 526 RGLLLIGAIHTEDDIWAALLLAKHLMWPVVADILSGLRLRKLFKSFPEFELNILFVDHLDHALLSDSVRNWIQFDVVIQI 605 (1655)
T ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCCeEEEeCCCCCCCCccccccccccccccccchHHHHhCchhhhccCCCCEEEEe
Confidence 999999999853 234569999999999999986 45 99999 899999988752222234567899999999
Q ss_pred CCCCCC-CcCCcccccCCCCeEEEEcCCchhhccCCCCcceEeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHh
Q 048725 362 GVRFDD-RVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKV 440 (661)
Q Consensus 362 G~~~~~-~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~ 440 (661)
|++++. +.++.+..+.+ .++||||+|+.++++++..++.+++|++.+++.|.+.+... ....|.+++.+.+.
T Consensus 606 G~rl~s~~~t~~~~~~~~-~~~I~ID~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~~~~~------~~~~w~~~~~~~~~ 678 (1655)
T PLN02980 606 GSRITSKRVSQMLEKCFP-FSYILVDKHPCRHDPSHLVTHRVQSNIVQFADCLLKAQFPR------RRSKWHGHLQALDG 678 (1655)
T ss_pred CCccccHHHHHHHHhCCC-CeEEEECCCCCccCCcccceEEEEeCHHHHHHHhhhccCcc------hhHHHHHHHHHHHH
Confidence 999974 34444332333 46999999999999999999999999999999887643211 12356655544432
Q ss_pred hCC--CCcC-CCCCCCChHHHHHHHhhhcCCCcEEEEcCChh----HHHHHhhcc-----------ccCCCeEEe-cCCC
Q 048725 441 KYP--LSFK-TFEESIPPQYAIQVLDELTNGEAIISTGVGQH----QMWAAQFYK-----------YRRPRQWLT-SGGL 501 (661)
Q Consensus 441 ~~~--~~~~-~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~----~~~~~~~~~-----------~~~p~~~~~-~~~~ 501 (661)
... .... .....+++.++++.|.+.+++|.+++.|.|++ .+|..++++ ...|++++. ++++
T Consensus 679 ~~~~~~~~~~~~~~~l~~~~v~~~L~~~Lp~d~ivv~d~g~~ird~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~ 758 (1655)
T PLN02980 679 MVAQEISFQIHAESSLTEPYVAHVISEALTSDSALFIGNSMAIRDADMYGCSSENYSSRIVDMMLSAELPCQWIQVAGNR 758 (1655)
T ss_pred HHHHHHHhhhhcCCCcchHHHHHHHHHhCCCCCeEEEECcHHHHHHHHcCCccccccccccccccccccccccceEEecC
Confidence 210 0000 01124788999999999999999999988753 477665554 467778885 7899
Q ss_pred Ccccc--hHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHc--CCCeEEEEEeCCcchhHHHHHHHhhcccc-cc
Q 048725 502 GAMGF--GLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVE--KLPIKILLLNNQHLGMVMQWEDRFYKANR-AH 576 (661)
Q Consensus 502 g~mG~--~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~--~lpv~ivV~NN~g~g~~~~~~~~~~~~~~-~~ 576 (661)
|+||+ ++|+|||++++. +++||+++|||||+|++|||+|++++ ++|+++||+||++|||+++++........ ..
T Consensus 759 G~mG~~G~lpaAIGaala~-~r~Vv~i~GDGsF~m~~~EL~Ta~r~~~~lpi~iVV~NN~gggi~~~l~~~~~~~~~~~~ 837 (1655)
T PLN02980 759 GASGIDGLLSTAIGFAVGC-NKRVLCVVGDISFLHDTNGLSILSQRIARKPMTILVINNHGGAIFSLLPIAKRTEPRVLN 837 (1655)
T ss_pred CccchhhhHHHHHHHhhcC-CCCEEEEEehHHHHhhhhHHHHhhcccCCCCEEEEEEeCCCcHhhhcCccCCCCcchhHH
Confidence 99999 599999999998 89999999999999999999999984 99999999999999998764211000000 11
Q ss_pred cccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCCC
Q 048725 577 TYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEH 637 (661)
Q Consensus 577 ~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~~ 637 (661)
.+++++. .+||.++|++||+++.+|++++||+++|+++++.++|+||||.++++++
T Consensus 838 ~~~~~~~-----~~df~~lA~a~G~~~~rV~~~~eL~~aL~~a~~~~~p~lIEV~t~~~~~ 893 (1655)
T PLN02980 838 QYFYTSH-----DISIENLCLAHGVRHLHVGTKSELEDALFTSQVEQMDCVVEVESSIDAN 893 (1655)
T ss_pred HHhcCCC-----CCCHHHHHHHcCCceeecCCHHHHHHHHHHhhccCCCEEEEEecChhhh
Confidence 2233332 2899999999999999999999999999999999999999999997764
No 55
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=100.00 E-value=1.6e-78 Score=599.24 Aligned_cols=547 Identities=30% Similarity=0.514 Sum_probs=475.2
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHh-CCcEEEEEccchhhHH
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS-GKPGICIATSGPGATN 165 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~t-g~~gv~~~tsGpG~~N 165 (661)
+|+.-|+-+-.|+++||++.||+||..+.|++.+|.+..+|+.|+.||-.+|.+||.||.|++ |..|||+.||||+-+.
T Consensus 3 kmravdaav~vlekegi~~afgvpgaainp~ysalr~~g~i~hvlarhvegashmaegytra~~gnigvcigtsgpagtd 82 (592)
T COG3960 3 KMRAVDAAVYVLEKEGITTAFGVPGAAINPFYSALRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD 82 (592)
T ss_pred chhhhhHHHHHHHhcCcceecCCCccccCHHHHHHHhcCcHHHHHHHHhcchhhhhcccccccCCceEEEecCCCCCccc
Confidence 577889999999999999999999999999999999998999999999999999999999997 8899999999999999
Q ss_pred HHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEe
Q 048725 166 LVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDV 245 (661)
Q Consensus 166 ~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~i 245 (661)
+++|++.|+.|++|+|.||||.|+....++.||.+|+..+.+|++||...+..|..+|.++++||+..+|+|||||.|++
T Consensus 83 mitglysa~adsipilcitgqaprarl~kedfqavdi~~ia~pv~kwavtv~epalvp~v~qkafhlmrs~rpgpvlidl 162 (592)
T COG3960 83 MITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKWAVTVREPALVPRVLQQAFHLMRSGRPGPVLIDL 162 (592)
T ss_pred hhhhhhhcccccccEEEecCCCchhhhchhhhhhhhHHHhhhhhhhhhhhhcchhhhHHHHHHHHHHHhcCCCCCeEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeecC
Q 048725 246 PKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTL 323 (661)
Q Consensus 246 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt~ 323 (661)
|+|+|..+++.+.+...+++.+ .+......-+++..+|.+++||+|++|+|+. ++.+.+.+|||..|+||+.|+
T Consensus 163 p~dvq~aeiefd~d~yepl~~~----kpaatr~qaekalaml~~aerplivagggiinadaa~l~~efael~gvpviptl 238 (592)
T COG3960 163 PFDVQVAEIEFDPDMYEPLPVY----KPAATRVQAEKALAMLIQAERPLIVAGGGVINADAAALLQEFAELTGVPVIPTL 238 (592)
T ss_pred ccceEEEEEecCccccCcCCcC----CchhHHHHHHHHHHHHhhccCcEEEecCceecccHHHHHHHHHHHcCCcccchh
Confidence 9999987764332222222221 1122455678889999999999999999986 568899999999999999999
Q ss_pred CCCCCCCCCCCCCCcccCCC-CcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcceE
Q 048725 324 MGLGSFPGTDELSLQMLGMH-GTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSV 402 (661)
Q Consensus 324 ~gkg~~p~~hpl~lg~~G~~-g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 402 (661)
||-|++|++||+..||.|.. ++.+.|..+-.+|+|+-+|.++..+.|++.+-+.+..++||||++|..+|+.+-+|+.|
T Consensus 239 mgwg~ipddhplmagm~glqtshrygnatll~sd~vfgignrwanrhtgsv~vyt~gr~fihvdieptqigrvf~pdlgi 318 (592)
T COG3960 239 MGWGCIPDDHPLMAGMVGLQTSHRYGNATLLASDMVFGIGNRWANRHTGSVEVYTEGRKFIHVDIEPTQIGRVFCPDLGI 318 (592)
T ss_pred ccccccCCcchhhcccccceecccccchhhhhhhheeeccchhhhcccCceeeeecCceEEEEeccccccceeecCccce
Confidence 99999999999999999975 56777888899999999999999999999888888999999999999999999999999
Q ss_pred eccHHHHHHHHHHHhcCCCC-CCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEEEEcCChhHH
Q 048725 403 CADLKLALKGINRILGGKDA-EGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQM 481 (661)
Q Consensus 403 ~~D~~~~L~~L~~~l~~~~~-~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~ 481 (661)
+.|+++.|+.+++.....+. .....++.|.+++++.+......-.-+.-++.|+++++++++.++.|...++-+|.+++
T Consensus 319 vsda~aal~~~ldva~ewk~agkl~~~~aw~~~cq~rkrtl~rkthfd~vp~kpqrvyeemn~~fgrd~~yvstiglsqi 398 (592)
T COG3960 319 VSDAKAALTLLLDVAQEWKKAGKLPCRKAWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGRDVCYVTTIGLSQI 398 (592)
T ss_pred eechHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHhhcCCceeEEEeccHHHH
Confidence 99999999998876532221 12346788999888776554322112344689999999999999999999999999999
Q ss_pred HHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchh
Q 048725 482 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGM 561 (661)
Q Consensus 482 ~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~ 561 (661)
.+++|+.+.+|++|+..+..|.+||.+|+|+|...|.|++.||++.||-.|+|-+.||+..+++++|.+.||+||.-+|.
T Consensus 399 a~aqflhv~~pr~wincgqagplgwtipaalgv~~adp~r~vvalsgdydfqfmieelavgaq~k~pyihv~vnnaylgl 478 (592)
T COG3960 399 AAAQFLHVFKPRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDYDFQFLIEELAVGAQFKIPYIHVLVNNAYLGL 478 (592)
T ss_pred hhhhhhhhcCCcceeecCccCCcccccchhhceeecCCCCceEEeecCchHHHHHHHHhhhhcccCceEEEEecchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccccccCC--CCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh----CCCcEEEEEEeCCC
Q 048725 562 VMQWEDRFYKANRAHTYLGD--PSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD----TPGPYLLDVIFPHQ 635 (661)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~g~--p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~----~~gp~lIeV~~~~~ 635 (661)
++|.|..+--+-...--|.| -.......+|..++++++||+..||.+++|+..+++++.. +.-|+++||++++-
T Consensus 479 irqaqr~f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgckairv~~p~e~a~af~~a~~lm~eh~vpvvve~ilerv 558 (592)
T COG3960 479 IRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQHRVPVVVEVILERV 558 (592)
T ss_pred HHHHHhcCCccceeeehhhccCCccccccCccceeehhccCceeEEecChHHhhHHHHHHHHHHHhcCCCeeeehHHHHh
Confidence 98877553211101111111 0111222479999999999999999999999999998763 67799999999875
Q ss_pred CC
Q 048725 636 EH 637 (661)
Q Consensus 636 ~~ 637 (661)
.+
T Consensus 559 tn 560 (592)
T COG3960 559 TN 560 (592)
T ss_pred hc
Confidence 54
No 56
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=2.9e-76 Score=618.82 Aligned_cols=515 Identities=24% Similarity=0.364 Sum_probs=429.2
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 048725 86 QPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATN 165 (661)
Q Consensus 86 ~~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N 165 (661)
.+.+.++||+++|.+.||+++||+||+.+++|+|.|...+++|||.|.||.+|+||||||||..| .+++++|.|+|.+.
T Consensus 2 ~~~tvG~YL~~RL~qlgi~~iFGVPGDyNL~lLD~i~~~~~lrWvGn~NELNaaYAADGYaR~~G-i~alvTTfGVGELS 80 (557)
T COG3961 2 SPITVGDYLFDRLAQLGIKSIFGVPGDYNLSLLDKIYSVPGLRWVGNANELNAAYAADGYARLNG-ISALVTTFGVGELS 80 (557)
T ss_pred CceeHHHHHHHHHHhcCCceeeeCCCcccHHHHHHhhcCCCceeecccchhhhhhhhcchhhhcC-ceEEEEecccchhh
Confidence 36789999999999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred HHHHHHHhhhCCCcEEEEecCCCCcccCC----------CCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhc
Q 048725 166 LVSGLADALLDSVPLVAITGQVPRRMIGT----------DAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATS 235 (661)
Q Consensus 166 ~l~gl~~A~~~~iPll~ItG~~p~~~~g~----------~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s 235 (661)
+++||+.+|.+++|||+|+|-+++...++ +.|. .+.+|.++++.....+++.+..++.|+|+++.+..
T Consensus 81 A~NGIAGSYAE~vpVvhIvG~P~~~~q~~~~llHHTLG~gdF~--~f~~M~~~itca~a~l~~~~~A~~eIDrvi~~~~~ 158 (557)
T COG3961 81 ALNGIAGSYAEHVPVVHIVGVPTTSAQASGLLLHHTLGDGDFK--VFHRMSKEITCAQAMLTDINTAPREIDRVIRTALK 158 (557)
T ss_pred hhcccchhhhhcCCEEEEEcCCCcchhhccchheeeccCCchH--HHHHHhhhhhhHhhhcCCcchhHHHHHHHHHHHHH
Confidence 99999999999999999999887654333 2222 25789999999988899988889999999999887
Q ss_pred CCCceEEEEeccchhhhccCCCCCCCCCCCCCCCCCCCCCC----HHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHH
Q 048725 236 GRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPS----EVHLEQIVRLISESKKPVLYVGGGCL--NSSEELR 309 (661)
Q Consensus 236 ~~~GPV~I~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~ 309 (661)
.+ +||||.+|.|+...++.... .|.... ....+ .+.++.++++|.++|||+|++|..+. +..+++.
T Consensus 159 ~~-RPvYI~lP~dva~~~~~~p~-~Pl~~~------~~~sd~e~~~e~i~~i~~lI~~ak~p~ILad~~~~r~~~~~~~~ 230 (557)
T COG3961 159 QR-RPVYIGLPADVADLPIEAPL-TPLDLQ------LKTSDPEALSEVIDTIAELINKAKKPVILADALVSRFGLEKELK 230 (557)
T ss_pred hc-CCeEEEcchHHhcCcCCCCC-Cccccc------cCCCCHHHHHHHHHHHHHHHhccCCcEEecchhhhhhhhHHHHH
Confidence 66 79999999999887664331 122111 11223 35577888899999999999999875 5789999
Q ss_pred HHHHHhCCCeeecCCCCCCCCCCCCCCCcc-cCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCC
Q 048725 310 KFVELTGIPVASTLMGLGSFPGTDELSLQM-LGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDID 388 (661)
Q Consensus 310 ~lae~lg~PV~tt~~gkg~~p~~hpl~lg~-~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d 388 (661)
+|++++++|+++++||||.|+|.||.|+|+ .|..+.+...++++.|||||.+|+.|+|+.|+.|..-.+..++|+++.+
T Consensus 231 ~l~~~t~~p~~~~pmGKg~idEs~P~y~GvY~G~~s~~~vre~vE~aD~il~iG~~ltD~~Tg~Ft~~~~~~~~i~~~~~ 310 (557)
T COG3961 231 KLINATGFPVATLPMGKGVIDESHPNYLGVYNGKLSEPEVREAVESADLILTIGVLLTDFNTGGFTYQYKPANIIEIHPD 310 (557)
T ss_pred HHHHhcCCCeEEeecccccccccCCCeeeEEecccCCHHHHHHhhcCCEEEEeceEEeeccccceeeecCcccEEEeccC
Confidence 999999999999999999999999999999 5778889999999999999999999999999999887777899999999
Q ss_pred chhhccCCCCcceEeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCC
Q 048725 389 SAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNG 468 (661)
Q Consensus 389 ~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~ 468 (661)
...+.......+. .+.+|+.|.+.+..+...... .+. .....+...+....+++..++++.+..++.+
T Consensus 311 ~v~I~~~~f~~l~----m~~~L~~L~~~i~~~~~~~~~--~~~------~~~~p~~~~~~~~~pLtq~~~w~~~~~fl~p 378 (557)
T COG3961 311 SVKIKDAVFTNLS----MKDALQELAKKIDKRNLSAPP--VAY------PARTPPTPYPPANEPLTQEWLWNTVQNFLKP 378 (557)
T ss_pred eeEecccccCCee----HHHHHHHHHHHhhhcccCCCC--ccC------CCCCCCCCCCCCCCcccHHHHHHHHHhhCCC
Confidence 9888766555554 588899998887654321100 000 0001111123345669999999999999999
Q ss_pred CcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCC
Q 048725 469 EAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLP 548 (661)
Q Consensus 469 d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lp 548 (661)
+.+|+.|.|++. ++..-..+++...++++.-||++||++|+|+|+++|.|+||||+++|||||+|+.||+.|..|++++
T Consensus 379 ~dviiaetGtS~-FG~~~~~lP~~~~~i~Q~lWGSIG~t~pAalGa~~A~~drR~IL~iGDGs~QlTvQEiStmiR~gl~ 457 (557)
T COG3961 379 GDVIIAETGTSF-FGALDIRLPKGATFISQPLWGSIGYTLPAALGAALAAPDRRVILFIGDGSLQLTVQEISTMIRWGLK 457 (557)
T ss_pred CCEEEEcccccc-ccceeeecCCCCeEEcccchhhcccccHhhhhhhhcCCCccEEEEEcCchhhhhHHHHHHHHHcCCC
Confidence 999999999754 4555666788899999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCE----eeeCCHHHHHHHHHHHHhC-C
Q 048725 549 IKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPG----AQVTRKADLRAAIQTMLDT-P 623 (661)
Q Consensus 549 v~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~----~~v~~~~el~~al~~a~~~-~ 623 (661)
.+++|+||+||-+.+.++.... |.+ +...+||.++.++||+.. .++++.++|..+++.+++. +
T Consensus 458 p~ifvlNN~GYTIEr~IHg~~~-----------~YN-dI~~Wd~~~l~~afg~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 525 (557)
T COG3961 458 PIIFVLNNDGYTIERAIHGPTA-----------PYN-DIQSWDYTALPEAFGAKNGEAKFRATTGEELALALDVAFANND 525 (557)
T ss_pred cEEEEEcCCCcEEEehhcCCCc-----------Ccc-cccccchhhhhhhcCCCCceEEEeecChHHHHHHHHHHhcCCC
Confidence 9999999999999876653111 111 011279999999999853 4778999999999999874 5
Q ss_pred CcEEEEEEeCCCC
Q 048725 624 GPYLLDVIFPHQE 636 (661)
Q Consensus 624 gp~lIeV~~~~~~ 636 (661)
++.+|||+++..+
T Consensus 526 ~i~lIEv~lp~~D 538 (557)
T COG3961 526 RIRLIEVMLPVLD 538 (557)
T ss_pred ceEEEEEecCccc
Confidence 8999999999766
No 57
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=100.00 E-value=3.7e-72 Score=616.64 Aligned_cols=418 Identities=20% Similarity=0.202 Sum_probs=351.6
Q ss_pred HHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHH
Q 048725 90 GADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSG 169 (661)
Q Consensus 90 gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~g 169 (661)
.+|+|++.|+++||+||||+||+++++|+++|.+.++|++|.++||++|+||||||+|+||||+||++|+|||++|+++|
T Consensus 2 ~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~g 81 (432)
T TIGR00173 2 WASVLVEELVRLGVRHVVISPGSRSTPLALAAAEHPRLRVHVHIDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPA 81 (432)
T ss_pred hHHHHHHHHHHcCCCEEEECCCcccHHHHHHHHhCCCcEEEEecCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHH
Confidence 47999999999999999999999999999999766679999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCc------HHHHHHHHHHHhhcCCCceEEE
Q 048725 170 LADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDD------IPRIVREAFLLATSGRPGPVLI 243 (661)
Q Consensus 170 l~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~------i~~~i~~A~~~a~s~~~GPV~I 243 (661)
|++||.+++|||+|+||++....+++.+|++||.++++++|||+.++.++++ +++.+++||+.|.++|+|||||
T Consensus 82 l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l 161 (432)
T TIGR00173 82 VIEASYSGVPLIVLTADRPPELRGCGANQTIDQPGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHI 161 (432)
T ss_pred HHHhcccCCcEEEEeCCCCHHHhCCCCCcccchhhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEE
Confidence 9999999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred EeccchhhhccCCCCCCCC-C--CCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCccc-hHHHHHHHHHHhCCCe
Q 048725 244 DVPKDIQQQLAVPNWNQPI-K--LPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLN-SSEELRKFVELTGIPV 319 (661)
Q Consensus 244 ~iP~dv~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~~-a~~~l~~lae~lg~PV 319 (661)
+||.|++..+......... . ...........++++.+++++++|.+||||+|++|+|+.. +.+++.+|+|++|+||
T Consensus 162 ~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~AkrPvi~~G~g~~~~a~~~l~~lae~~~~PV 241 (432)
T TIGR00173 162 NVPFREPLYPDPLLQPLQPWLRSGVPTVTTGPPVLDPESLDELWDRLNQAKRGVIVAGPLPPAEDAEALAALAEALGWPL 241 (432)
T ss_pred eCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHHHHHHHhhcCCcEEEEcCCCcHHHHHHHHHHHHhCCCeE
Confidence 9999996543210000000 0 0000001112346778999999999999999999999863 6889999999999999
Q ss_pred eecCCCCCCCCCCCCCCCcccC-CCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCC
Q 048725 320 ASTLMGLGSFPGTDELSLQMLG-MHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQP 398 (661)
Q Consensus 320 ~tt~~gkg~~p~~hpl~lg~~G-~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~ 398 (661)
++|++|||.+ ++| +++|.++ ..++..+++++ ++|+||+||++++++.+..| .+.++.++||||+|+..+++++.+
T Consensus 242 ~tt~~~~~~~-~~~-~~~G~~~~~~~~~~~~~~~-~aDlvl~lG~~~~~~~~~~~-~~~~~~~~i~vd~d~~~~~~~~~~ 317 (432)
T TIGR00173 242 LADPLSGLRG-GPH-LVIDHYDLLLANPELREEL-QPDLVIRFGGPPVSKRLRQW-LARQPAEYWVVDPDPGWLDPSHHA 317 (432)
T ss_pred EEeCCCCCCC-CCC-CCcCHHHHHhcCCchhhhC-CCCEEEEeCCCcchhHHHHH-HhCCCCcEEEECCCCCccCCCCCc
Confidence 9999999999 779 9999764 66677777777 99999999999987765544 233457899999999999999999
Q ss_pred cceEeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEEEEcCCh
Q 048725 399 HVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQ 478 (661)
Q Consensus 399 ~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~ 478 (661)
++.|.+|++.+|++|++.++.. ...+...|.+...+......... ...++++.++++.|++.+++|.+|+.|.|+
T Consensus 318 ~~~i~~D~~~~l~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~p~~~~~~l~~~lp~d~ivv~d~g~ 392 (432)
T TIGR00173 318 TTRLEASPAEFAEALAGLLKNP---DAAWLDRWLEAEAKAREALREVL--AEEPLSELSLARALSQLLPEGAALFVGNSM 392 (432)
T ss_pred eEEEEECHHHHHHHhhhccCCC---ChHHHHHHHHHHHHHHHHHHHHh--ccCCccHHHHHHHHHHhCCCCCeEEEECCH
Confidence 9999999999999998877531 11123334333322222111111 123588999999999999999999999999
Q ss_pred hHHHHHhhcccc-CCCeEEecCCCCcccchHHHHHHhhh
Q 048725 479 HQMWAAQFYKYR-RPRQWLTSGGLGAMGFGLPAAIGAAV 516 (661)
Q Consensus 479 ~~~~~~~~~~~~-~p~~~~~~~~~g~mG~~lpaAiGaal 516 (661)
+..|..+++... .|+++++++++|+||+++|+|||+++
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~g~g~mG~glp~aiGa~~ 431 (432)
T TIGR00173 393 PIRDLDTFAQPPDKPIRVFANRGASGIDGTLSTALGIAL 431 (432)
T ss_pred HHHHHHhcCCcCCCCceEEecCchhhHHHHHHHHHHhhc
Confidence 999999999887 79999999999999999999999986
No 58
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=1.9e-68 Score=557.30 Aligned_cols=520 Identities=23% Similarity=0.335 Sum_probs=422.2
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 048725 86 QPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATN 165 (661)
Q Consensus 86 ~~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N 165 (661)
.+++.+++|+++|.+.||++|||+||+.++.|+|.|+..+++||+.|.||.+|+||||||||..| .++|++|.|+|.+.
T Consensus 2 ~~i~~G~YLf~RL~q~gvksvfgVPGDFNL~LLD~l~~~~~lrwvGn~NELNaAYAADGYAR~~G-i~a~VtTfgVGeLS 80 (561)
T KOG1184|consen 2 SPITLGEYLFRRLVQAGVKTVFGVPGDFNLSLLDKLYAVPGLRWVGNCNELNAAYAADGYARSKG-IGACVTTFGVGELS 80 (561)
T ss_pred CceeHHHHHHHHHHHcCCceeEECCCcccHHHHHHhhhcCCceeecccchhhhhhhhcchhhhcC-ceEEEEEeccchhh
Confidence 35789999999999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred HHHHHHHhhhCCCcEEEEecCCCCcccCCCCC--CC---C---CHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCC
Q 048725 166 LVSGLADALLDSVPLVAITGQVPRRMIGTDAF--QE---T---PIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGR 237 (661)
Q Consensus 166 ~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~--q~---~---~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~ 237 (661)
+++|++.||.+++|||+|+|-+++...+++.+ ++ - -+.+|++.++.++..+.+.++.++.|++|++.|....
T Consensus 81 AlNGIAGsYAE~vpVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~~~e~A~~~ID~aI~~~~~~~ 160 (561)
T KOG1184|consen 81 ALNGIAGAYAENVPVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMINDIEDAPEQIDKAIRTALKES 160 (561)
T ss_pred hhcccchhhhhcCCEEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhcCHhhhHHHHHHHHHHHHHhc
Confidence 99999999999999999999888765544321 11 1 2578999999999999999999999999999999765
Q ss_pred CceEEEEeccchhhhccCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHH
Q 048725 238 PGPVLIDVPKDIQQQLAVPNW--NQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVE 313 (661)
Q Consensus 238 ~GPV~I~iP~dv~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae 313 (661)
.||||.||.|+...+..... +.+..++. ........++.++.+++++..+++|+|++|...+ ...++..+|++
T Consensus 161 -rPVYi~iP~n~~~~~~~~~~l~~~p~~~~~--~~s~~e~~~~~v~~i~e~i~~~~~Pvil~~~~~~r~~~~~~~~~l~~ 237 (561)
T KOG1184|consen 161 -KPVYIGVPANLADLPVPAFGLLPVPLDLSP--KPSNKEGLEEAVDAILELINKAKKPVILGDPKLRRAKAESAFVELAD 237 (561)
T ss_pred -CCeEEEeecccccCcCCcccCCCCCcccCC--CCCcHHHHHHHHHHHHHHhhhccCCeeeccccccHHHHHHHHHHHHH
Confidence 69999999998766543221 11111110 0000112245677888999999999999998876 46788999999
Q ss_pred HhCCCeeecCCCCCCCCCCCCCCCcc-cCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhh
Q 048725 314 LTGIPVASTLMGLGSFPGTDELSLQM-LGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEI 392 (661)
Q Consensus 314 ~lg~PV~tt~~gkg~~p~~hpl~lg~-~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i 392 (661)
++++|++.|++|||.+||+||.+.|+ .|..+.+...++++.+|+||.+|..++++.++.|+...+..++++++.|...+
T Consensus 238 ~~~~p~~vtp~gKg~i~E~hp~y~Gvy~G~vs~~~~~e~vesaDlil~~G~~~sd~ss~~~~~~~k~~~~i~~~~d~v~i 317 (561)
T KOG1184|consen 238 ATGFPVFVTPMGKGFIPESHPHYGGVYWGAVSTPFVKEIVESADLIIFAGPLFNDYSSGGFSYLYKKKNAIEFHSDRVKI 317 (561)
T ss_pred hhCCCeeEeecccccccCcCCceeeEEecccccHhHHHHHhhcCeEEEecccccccccceeEeecCccceEEEecceEEe
Confidence 99999999999999999999999999 67778888999999999999999999999999998888888999999998877
Q ss_pred ccCCCCcceEeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCC-cCCCCCCCChHHHHHHHhhhcCCCcE
Q 048725 393 GKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLS-FKTFEESIPPQYAIQVLDELTNGEAI 471 (661)
Q Consensus 393 ~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~-~~~~~~~i~~~~~~~~l~~~l~~d~i 471 (661)
.......+ +.+.+|+.|++.+........ .. .+........ .......+....++..+...+.+..+
T Consensus 318 ~~~~f~~v----~mk~~l~~Lak~I~~~~~~~~----~y----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~d~ 385 (561)
T KOG1184|consen 318 RNATFGGV----LMKDFLQELAKRIKKNKTSYE----NY----VRIPVPEPKPLACPPNAPLRQEWMWNHIQKFLSSGDV 385 (561)
T ss_pred ccccccce----eHHHHHHHHHHhhcccccchh----cc----cccCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCCce
Confidence 65333333 578999999998865432110 00 0000000000 11123347778899999999988888
Q ss_pred EEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEE
Q 048725 472 ISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKI 551 (661)
Q Consensus 472 v~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~i 551 (661)
+.++.|.+. +..+-+.++....+.+...||++||++|+++|+++|.|+++||+++|||||+++.||+.|+.|+++|..+
T Consensus 386 v~~ETG~S~-F~~~~~~fP~g~~~~~q~~wgsIG~svga~lG~a~a~~e~rvilfiGDGs~qlTvQeiStmir~gl~~~i 464 (561)
T KOG1184|consen 386 VIAETGDSW-FGINQTKFPKGCGYESQMQWGSIGWSVGATLGYAQAAPEKRVILFIGDGSFQLTVQEISTMIRWGLKPII 464 (561)
T ss_pred EEEecccce-ecceeeccccccceEEEEEEeeccccchhhhhhhhccCCceEEEEecCccceeeHHHHHHHHhcCCCcEE
Confidence 888888654 3445566778888999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCC-----CEeeeCCHHHHHHHHHHHHh--CCC
Q 048725 552 LLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGI-----PGAQVTRKADLRAAIQTMLD--TPG 624 (661)
Q Consensus 552 vV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~-----~~~~v~~~~el~~al~~a~~--~~g 624 (661)
+|+||+||-+.+..+. .|.+..+ .+||.++.++||. +..++.+.+|+.++++.+.. .++
T Consensus 465 f~~NN~GYTIE~~IH~-------------~~Yn~I~-~Wd~~~l~~afg~~~gk~~~~~v~~~~e~~~~~~~~~~~~~~~ 530 (561)
T KOG1184|consen 465 FLINNGGYTIEVEIHD-------------GPYNDIQ-NWDYTALLEAFGAGEGKYETHKVRTEEELVEAIKDATFEKNDK 530 (561)
T ss_pred EEEeCCceEEEEeecC-------------CCccccc-cchHHHHHHhhcCccceeEEeeeccchHHHHHHhhhhhcccCc
Confidence 9999999988644332 1111111 2799999999996 34588899999999998883 578
Q ss_pred cEEEEEEeCCCC
Q 048725 625 PYLLDVIFPHQE 636 (661)
Q Consensus 625 p~lIeV~~~~~~ 636 (661)
+.+|||+++..+
T Consensus 531 i~liEv~l~~~D 542 (561)
T KOG1184|consen 531 IRLIEVILPVDD 542 (561)
T ss_pred eEEEEEecCccc
Confidence 999999998766
No 59
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-67 Score=538.90 Aligned_cols=552 Identities=24% Similarity=0.351 Sum_probs=447.3
Q ss_pred CCcHHHHHHHHHHHCCC---------CEEEeccCCCc-HHHHHHHHcCCC-CeEEccCChhHHHHHHHHHHHHhCC--cE
Q 048725 87 PRKGADILVEALERQGV---------TDVFAYPGGAS-MEIHQALTRSNN-IRNVLPRHEQGGIFAAEGYARSSGK--PG 153 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV---------~~vFg~PG~~~-~~l~~aL~~~~~-i~~v~~~hE~~A~~~A~Gyar~tg~--~g 153 (661)
.++.+++|++.|.+.=+ .-||.+-|..+ ..|-++|+..++ +..+..+|||+.+++|.||+|...| ..
T Consensus 6 RlT~aQAlvrfL~~Q~~~~ge~~p~~~GvfaIFGHGNVaGiGeAL~~~~~~l~~yqg~NEQgMAhaAiayaKq~~Rrr~~ 85 (617)
T COG3962 6 RLTMAQALVRFLAQQMTEIGEIVPFVGGVFAIFGHGNVAGIGEALYQVRDHLPTYQGHNEQGMAHAAIAYAKQHRRRRIY 85 (617)
T ss_pred hhHHHHHHHHHHHhhhhhhcccccccceeeEEecCcchhhhHHHHHhCccccchhhcccHhHHHHHHHHHHHHHhhceee
Confidence 47889999999976432 34666666544 578899988754 8999999999999999999999865 44
Q ss_pred EEEEccchhhHHHHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCC--------CCHHHHhhcccccccccCCcCcHHHH
Q 048725 154 ICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQE--------TPIVEVTRSITKHNYLVLDVDDIPRI 225 (661)
Q Consensus 154 v~~~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~--------~~~~~~~~~itk~~~~v~~~~~i~~~ 225 (661)
+|-.+.|||++|++++.+-|..+++|+|++-||.-....-..-+|+ +...+.|+|++||..++++||++-..
T Consensus 86 A~tsSiGPGA~NmvTaAalA~~NrlPvLllPgDvfA~R~PDPVLQQ~E~~~d~~it~NDcfrPVSRYfDRItRPEQl~sa 165 (617)
T COG3962 86 AVTSSIGPGAANMVTAAALAHVNRLPVLLLPGDVFATRQPDPVLQQLEQFGDGTITTNDCFRPVSRYFDRITRPEQLMSA 165 (617)
T ss_pred EEecccCCcHHHHHHHHHHHHhhcCceEeeccchhcccCCChHHHhhhccccCceecccccccHHHHhhhcCCHHHHHHH
Confidence 5555669999999999999999999999999987432211111222 22357899999999999999999999
Q ss_pred HHHHHHHhhcC-CCceEEEEeccchhhhccCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc-
Q 048725 226 VREAFLLATSG-RPGPVLIDVPKDIQQQLAVPNWNQPIKLPG-YMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL- 302 (661)
Q Consensus 226 i~~A~~~a~s~-~~GPV~I~iP~dv~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~- 302 (661)
+-|||+..+.+ .-|||-|.+|.|+|.+.. +|++..-... +..+ .+.|++..+++++++|+++|||+||+|+|+.
T Consensus 166 l~rA~~VmTDPA~~GpvTl~l~QDVq~eA~--Dyp~~FF~~rv~~~r-R~~Pd~~eL~~A~~lik~ak~PlIvaGGGv~Y 242 (617)
T COG3962 166 LPRAMRVMTDPADCGPVTLALCQDVQAEAY--DYPESFFEKRVWRIR-RPPPDERELADAAALIKSAKKPLIVAGGGVLY 242 (617)
T ss_pred HHHHHHHhCChhhcCceEEEechhhhhhhc--CCcHHhhhhhhhhcc-CCCCCHHHHHHHHHHHHhcCCCEEEecCceee
Confidence 99999998863 459999999999987654 2322211111 1111 2357899999999999999999999999996
Q ss_pred -chHHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccC-CCC
Q 048725 303 -NSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFA-SRA 380 (661)
Q Consensus 303 -~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~-~~~ 380 (661)
++.++|++|+|..|+||+.|..|||.++.+||+++|-+|..|+..+|.+.++||+||.||+|+.|+.|+.|..|. +..
T Consensus 243 S~A~~~L~af~E~~~iPv~ETQaGKsal~~dhplNlG~vGvTGt~AAN~~A~~ADlVigiGTR~~DFTTgS~alF~~~~~ 322 (617)
T COG3962 243 SGAREALRAFAETHGIPVVETQAGKSALAWDHPLNLGGVGVTGTLAANRAAEEADLVIGIGTRLQDFTTGSKALFKNPGV 322 (617)
T ss_pred chHHHHHHHHHHhcCCceEeccCCcccccccCccccccccccchHHHHhhhhhcCEEEEecccccccccccHHHhcCCCc
Confidence 689999999999999999999999999999999999999999999999999999999999999999999988876 667
Q ss_pred eEEEEcCCchhhccCCCCcceEeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCc-----C-CCCCC-C
Q 048725 381 KIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSF-----K-TFEES-I 453 (661)
Q Consensus 381 ~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~-----~-~~~~~-i 453 (661)
|++.|+..+.+-+|. -.+.+++|++..|.+|.+.|..-+. ...|.++..+.+..+.... + ..... .
T Consensus 323 k~l~lNV~~~da~K~--~a~~lvaDAr~~L~~L~~~L~g~~~-----~~~w~~~~~~~~~~w~~~~~~~~a~~~~lnt~p 395 (617)
T COG3962 323 KFLNLNVQPFDAYKH--DALPLVADARAGLEALSEALGGYRT-----AAGWTDERERLKAAWDAEADAPTAKNHFLNTLP 395 (617)
T ss_pred eEEEeeccccccccc--ccceehhHHHHHHHHHHHHhccccc-----chhHHHHHHHhhhhhhhhcccccccccccccCc
Confidence 899999887765553 5578999999999999999975432 2347766655544332111 0 11112 2
Q ss_pred ChHHHHHHHhhhcCCCcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccc
Q 048725 454 PPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFI 533 (661)
Q Consensus 454 ~~~~~~~~l~~~l~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~ 533 (661)
+...++-.+++...++.+|++..|+..--..++|+...|..|....||.+|||-+..++|++++.|++.|++++|||||+
T Consensus 396 tq~~vigav~~~~~~~svvvcAAGsLPGdLhkLW~~~~p~~YH~EYgfSCMGYEiaG~lG~K~a~pdreV~vmVGDGSym 475 (617)
T COG3962 396 TQTQVIGAVQRTISDDSVVVCAAGSLPGDLHKLWRAGVPGTYHLEYGFSCMGYEIAGGLGAKAAEPDREVYVMVGDGSYM 475 (617)
T ss_pred cchhHHHHHHhhcCCCcEEEEeCCCCcHHHHHHhccCCCCceeeeecccccccccccccccccCCCCCeEEEEEcccchh
Confidence 33467888899999999999999987777778888899999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCC-cccCCccHHHHHhHcCCCEeeeCCHHHH
Q 048725 534 MNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSR-ESEIFPNMLKFAEACGIPGAQVTRKADL 612 (661)
Q Consensus 534 ~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~-~~~~~~d~~~~A~a~G~~~~~v~~~~el 612 (661)
|--.||.|++.++..+++++++|.|||.+..+|....+. .+.+.+..-.. ...+.+||++.|++||++.++|.+.+||
T Consensus 476 MlnSEL~Tsv~~g~Ki~Vvl~DN~GyGCIn~LQm~~Gg~-sf~~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv~~i~eL 554 (617)
T COG3962 476 MLNSELATSVMLGKKIIVVLLDNRGYGCINRLQMATGGA-SFNNLLRDTDHEEEILQVDFAAHAESYGAKAYKVGTIEEL 554 (617)
T ss_pred hhhHHHHHHHHcCCeEEEEEECCCCcchhhhhhhhcCcc-hhhhhhhhhcccCCCCcccHHHHHhhcCceeEecCCHHHH
Confidence 999999999999999999999999999998888654322 22222221111 2234589999999999999999999999
Q ss_pred HHHHHHHHhCCCcEEEEEEeCCCCCcCCcCCCCCccccccc
Q 048725 613 RAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFKDVIT 653 (661)
Q Consensus 613 ~~al~~a~~~~gp~lIeV~~~~~~~~~p~~~~~~~~~~~~~ 653 (661)
+.+|+++.++.+++||++.+++ +++.+.+.+|||+-+
T Consensus 555 ~aAL~~Ak~~~~ttvi~I~t~P----~~~t~~g~~WWdV~V 591 (617)
T COG3962 555 EAALADAKASDRTTVIVIDTDP----KTTTDDGGSWWDVAV 591 (617)
T ss_pred HHHHHHHHhCCCCEEEEEecCC----ccccCCCCceeeccc
Confidence 9999999999999999999984 456778899998644
No 60
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=100.00 E-value=5.1e-60 Score=502.27 Aligned_cols=523 Identities=19% Similarity=0.195 Sum_probs=402.6
Q ss_pred CcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 048725 88 RKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLV 167 (661)
Q Consensus 88 ~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l 167 (661)
..++.+++|.|.++||++++.+|||++.||.-++.++++|+++...+||+|+|+|.|.||++++|.+++||||++++|++
T Consensus 8 t~~a~v~~eeL~r~GV~~vvicPGSRSTPLala~~~~~~i~~hv~~DERsagFfALGlAKas~rPVavi~TSGTA~ANl~ 87 (566)
T COG1165 8 TLWARVFLEELARLGVRDVVICPGSRSTPLALAAAAHDAITVHVHIDERSAGFFALGLAKASKRPVAVICTSGTAVANLY 87 (566)
T ss_pred HHHHHHHHHHHHHcCCcEEEECCCCCCcHHHHHHHhcCCeEEEEecccchHHHHHHhhhhhcCCCEEEEEcCcchhhhcc
Confidence 46889999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCc-------HHHHHHHHHHHhhcCCCce
Q 048725 168 SGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDD-------IPRIVREAFLLATSGRPGP 240 (661)
Q Consensus 168 ~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~-------i~~~i~~A~~~a~s~~~GP 240 (661)
++|+||.+.++|||++|+|+|.+++++++.|.+||..+|.++++|+..+..|++ +..+..+++..|++..+||
T Consensus 88 PAViEA~~srvpLIVLTADRP~EL~~~GAnQaI~Q~~lfgs~v~~~~~L~~P~~~~~~~~~~~~~~~~~~~~a~~~~~Gp 167 (566)
T COG1165 88 PAVIEANLSRVPLIVLTADRPPELRGCGANQAIDQTGLFGSYVRASIDLPLPEDDIEALWYLRTIASAAAQQARTPHAGP 167 (566)
T ss_pred HHHHhhhhcCCceEEEeCCCCHHHhcCCCchhhhhhhhhcccchhhccCCCCCCCHHHHHHHHHHHHHHHHhccCCCCCc
Confidence 999999999999999999999999999999999999999999999998876653 5566667778888888999
Q ss_pred EEEEeccchhhhccCCCCCCCCCCCCCCCCC--------CCCCC--HHHHHHHHHHHHhCCCcEEEEcCCccchHHHHHH
Q 048725 241 VLIDVPKDIQQQLAVPNWNQPIKLPGYMSRL--------PKEPS--EVHLEQIVRLISESKKPVLYVGGGCLNSSEELRK 310 (661)
Q Consensus 241 V~I~iP~dv~~~~~~~~~~~~~~~~~~~~~~--------~~~~~--~~~l~~~~~~L~~AkrPvIv~G~g~~~a~~~l~~ 310 (661)
||||+|++....+. .++......+.... +..-+ ++.+.+ .+. -.++|++||+|.-.....+++.+
T Consensus 168 VHiN~PfrePL~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~rgviv~G~~~~~e~~~i~~ 242 (566)
T COG1165 168 VHINVPFREPLVPD---LEPEGAGTPWGRPLGHWWFYTGPWTVDQGPDLLSE-WFF-WRQKRGVIVAGRMSAQEGKGILA 242 (566)
T ss_pred eEecCCCCccCCCC---CCccccccccccccCchhhcCCceeeecccccccc-hhh-hcccCceEEEecCchhhhHHHHH
Confidence 99999998643221 11100111100000 00000 112222 232 35799999999887777777999
Q ss_pred HHHHhCCCeeecC-CCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCc
Q 048725 311 FVELTGIPVASTL-MGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDS 389 (661)
Q Consensus 311 lae~lg~PV~tt~-~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~ 389 (661)
+++.+|+|+++.+ ++.+.+=...++++ .+..+.+-+.. |.||.||..+....-.+|-......+.+.||...
T Consensus 243 ~a~~lg~PilaDplS~lr~~i~~yD~~L------~~~~~~~~L~~-d~VI~fG~~~~SK~l~qwl~~~~~~~~~vvd~~~ 315 (566)
T COG1165 243 LANTLGWPILADPLSPLRNYIPCYDLWL------ANPKAAEKLRP-DIVIQFGSPPTSKRLLQWLADTEPIEYWVVDPGG 315 (566)
T ss_pred HHHHhCCceecccccccCCCcccchhhh------cCchhhhhcCc-cEEEEeCCCcccHHHHHHHhccCCCcEEEEcCCC
Confidence 9999999999975 44444311222222 23333334444 9999999998544333333323346899999999
Q ss_pred hhhccCCCCcceEeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCC-cCC-CCCCCChHHHHHHHhhhcC
Q 048725 390 AEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLS-FKT-FEESIPPQYAIQVLDELTN 467 (661)
Q Consensus 390 ~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~-~~~-~~~~i~~~~~~~~l~~~l~ 467 (661)
..++..+..+..+.+|+..+++.+...... .+.|.+++....++.... ... ..+.+....+...|.+.++
T Consensus 316 ~~~Dp~~~~~~~~~~~v~~~~~~~~~~~~~--------~~~Wl~~~~~~~~~~~~~v~~~~~~~~~~e~~~a~~l~~~lp 387 (566)
T COG1165 316 GWLDPSHHATTRLSADVATWARSIHPAGRI--------RKPWLDEWLALNEKARQAVRDQLAAEALTEAHLAAALADLLP 387 (566)
T ss_pred CcCCcccccceEEEeehhHhHHHhcccccc--------ccHHHHHHHHHHHHHHHHHHHHhcccCchhhHHHHHHHHhCC
Confidence 999998888888999999998766432110 345655544333221100 000 1114667788899999998
Q ss_pred CCcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCC
Q 048725 468 GEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKL 547 (661)
Q Consensus 468 ~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~l 547 (661)
++..++.+.+..--+...++....+.+.++++|..+|...+++|+|++.+. .+++|+++||.||+|+++.|....+.+.
T Consensus 388 ~~~~LFvgNSmpVRdvd~~~~~~~~~~v~sNRGA~GIDG~vSTA~Gi~~a~-~~ptv~liGDLS~lhD~NgLl~~k~~~~ 466 (566)
T COG1165 388 PQDQLFVGNSMPVRDVDALGQLPAGYRVYSNRGASGIDGTVSTALGIARAT-QKPTVALIGDLSFLHDLNGLLLLKKVPQ 466 (566)
T ss_pred CCCeEEEecCchhhhHHHhccCccCceeecCCCccccchhHHHHhhhhhhc-CCceEEEEechhhhhccchHhhcCCCCC
Confidence 877666665543333334444447778888887777777899999999987 6789999999999999999999999999
Q ss_pred CeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEE
Q 048725 548 PIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYL 627 (661)
Q Consensus 548 pv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~l 627 (661)
|++|||+||+|+|||..+++..... .++.+|++|++ .||+.+|+.||++|.++.+++||+++++.+....|..|
T Consensus 467 ~ltIvv~NNnGGgIF~~Lp~~~~~~-~fe~~F~tPh~-----ldF~~la~~y~l~y~~~~s~~~l~~~~~~~~~~~g~~v 540 (566)
T COG1165 467 PLTIVVVNNNGGGIFSLLPQAQSEP-VFERLFGTPHG-----LDFAHLAATYGLEYHRPQSWDELGEALDQAWRRSGTTV 540 (566)
T ss_pred CeEEEEEeCCCceeeeeccCCCCcc-hHHHhcCCCCC-----CCHHHHHHHhCccccccCcHHHHHHHHhhhccCCCcEE
Confidence 9999999999999998877543321 35778999997 89999999999999999999999999999998899999
Q ss_pred EEEEeCCCCC
Q 048725 628 LDVIFPHQEH 637 (661)
Q Consensus 628 IeV~~~~~~~ 637 (661)
|||++++++.
T Consensus 541 iEvkt~r~~~ 550 (566)
T COG1165 541 IEVKTDRSDG 550 (566)
T ss_pred EEEecChhHH
Confidence 9999998764
No 61
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=100.00 E-value=2.8e-42 Score=328.63 Aligned_cols=163 Identities=36% Similarity=0.605 Sum_probs=157.0
Q ss_pred cHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHH
Q 048725 89 KGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVS 168 (661)
Q Consensus 89 ~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~ 168 (661)
+++++|++.|+++||++|||+||+.+++|+++|.+.++|++|.+|||++|+|||+||+|++|||+||++|+|||++|+++
T Consensus 1 ~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~ 80 (164)
T cd07039 1 TVADVIVETLENWGVKRVYGIPGDSINGLMDALRREGKIEFIQVRHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLN 80 (164)
T ss_pred CHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHH
Confidence 57999999999999999999999999999999987567999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 169 GLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 169 gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
|+++||.|++|||+|+|+.++...+++.+|++|+.++++++|||+.++.+++++++.+++||+.|+++ +|||||+||.|
T Consensus 81 ~l~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~-~GPV~l~iP~d 159 (164)
T cd07039 81 GLYDAKRDRAPVLAIAGQVPTDELGTDYFQEVDLLALFKDVAVYNETVTSPEQLPELLDRAIRTAIAK-RGVAVLILPGD 159 (164)
T ss_pred HHHHHHhcCCCEEEEecCCcccccCCCCCcccCHHHHHHHhhcEEEEeCCHHHHHHHHHHHHHHHhcC-CCCEEEEeChH
Confidence 99999999999999999999998899999999999999999999999999999999999999999995 59999999999
Q ss_pred hhhh
Q 048725 249 IQQQ 252 (661)
Q Consensus 249 v~~~ 252 (661)
++++
T Consensus 160 v~~~ 163 (164)
T cd07039 160 VQDA 163 (164)
T ss_pred Hhcc
Confidence 9754
No 62
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=100.00 E-value=4.9e-41 Score=317.69 Aligned_cols=155 Identities=32% Similarity=0.459 Sum_probs=150.7
Q ss_pred HHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHH
Q 048725 93 ILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSGLAD 172 (661)
Q Consensus 93 ~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~gl~~ 172 (661)
+|++.|+++||++|||+||+.+.+|+++|.++++|++|.+|||++|+||||||+|+||||+||++|+|||++|+++|+++
T Consensus 2 ~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl~~ 81 (162)
T cd07037 2 ALVEELKRLGVRDVVISPGSRSAPLALAAAEHPEFRLHVRVDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAVVE 81 (162)
T ss_pred hHHHHHHHCCCCEEEECCCcchHHHHHHHHhCCCceEEeccChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHHHH
Confidence 68999999999999999999999999999776679999999999999999999999999999999999999999999999
Q ss_pred hhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCc------HHHHHHHHHHHhhcCCCceEEEEec
Q 048725 173 ALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDD------IPRIVREAFLLATSGRPGPVLIDVP 246 (661)
Q Consensus 173 A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~------i~~~i~~A~~~a~s~~~GPV~I~iP 246 (661)
|+.+++|||+|+|+.+....+++.+|++||.++++++|||+.++.++++ +++.+++|++.|+++|||||||+||
T Consensus 82 A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~vtk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 82 AYYSGVPLLVLTADRPPELRGTGANQTIDQVGLFGDYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred HHhcCCCEEEEECCCCHHhcCCCCCcccchhhhccceeeEEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 9999999999999999988899999999999999999999999999999 9999999999999999999999999
Q ss_pred c
Q 048725 247 K 247 (661)
Q Consensus 247 ~ 247 (661)
.
T Consensus 162 ~ 162 (162)
T cd07037 162 F 162 (162)
T ss_pred C
Confidence 4
No 63
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=100.00 E-value=1.8e-39 Score=312.92 Aligned_cols=167 Identities=47% Similarity=0.786 Sum_probs=157.6
Q ss_pred CcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 048725 88 RKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLV 167 (661)
Q Consensus 88 ~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l 167 (661)
|+++|+|++.|+++||++|||+||+.+.+|+++|.++++|++|.++||++|++||+||+|++|||+||++|+|||++|++
T Consensus 1 mt~~~~l~~~L~~~Gv~~vfgvpG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~ 80 (172)
T PF02776_consen 1 MTGAEALAEALKANGVTHVFGVPGSGNLPLLDALEKSPGIRFIPVRHEQGAAFMADGYARATGRPGVVIVTSGPGATNAL 80 (172)
T ss_dssp EEHHHHHHHHHHHTT-SEEEEE--GGGHHHHHHHHHTTTSEEEE-SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTH
T ss_pred CcHHHHHHHHHHHCCCeEEEEEeChhHhHHHHHhhhhcceeeecccCcchhHHHHHHHHHhhccceEEEeecccchHHHH
Confidence 68999999999999999999999999999999999987799999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcEEEEecCCCCcccCCCCCC-CCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEec
Q 048725 168 SGLADALLDSVPLVAITGQVPRRMIGTDAFQ-ETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVP 246 (661)
Q Consensus 168 ~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q-~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP 246 (661)
++|++|+.+++|||+|+|+++....+++.+| +.|+.+++++++||++++.+++++++.+++|++.|.++++|||||+||
T Consensus 81 ~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~~d~~~~~~~~~k~~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip 160 (172)
T PF02776_consen 81 TGLANAYADRIPVLVITGQRPSAGEGRGAFQQEIDQQSLFRPVTKWSYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIP 160 (172)
T ss_dssp HHHHHHHHTT-EEEEEEEESSGGGTTTTSTTSSTHHHHHHGGGSSEEEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEE
T ss_pred HHHhhcccceeeEEEEecccchhhhcccccccchhhcchhccccchhcccCCHHHHHHHHHHHHHHhccCCCccEEEEcC
Confidence 9999999999999999999999999989999 889999999999999999999999999999999999999999999999
Q ss_pred cchhhhcc
Q 048725 247 KDIQQQLA 254 (661)
Q Consensus 247 ~dv~~~~~ 254 (661)
.|++.+++
T Consensus 161 ~dv~~~~~ 168 (172)
T PF02776_consen 161 QDVQEAEV 168 (172)
T ss_dssp HHHHTSEE
T ss_pred hhHhhCcc
Confidence 99998765
No 64
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=100.00 E-value=1.1e-37 Score=296.59 Aligned_cols=154 Identities=25% Similarity=0.411 Sum_probs=143.6
Q ss_pred HHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHH
Q 048725 92 DILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSGLA 171 (661)
Q Consensus 92 d~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~gl~ 171 (661)
|+|++.|+++||++|||+||+.+++|+++|.+.++|++|.++||++|+|||+||+|+| +|+||++|+|||++|+++||+
T Consensus 1 ~~l~~~L~~~Gi~~vFg~pG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mA~gyar~t-~~gv~~~t~GpG~~n~~~gl~ 79 (162)
T cd07038 1 EYLLERLKQLGVKHVFGVPGDYNLPLLDAIEENPGLRWVGNCNELNAGYAADGYARVK-GLGALVTTYGVGELSALNGIA 79 (162)
T ss_pred CHHHHHHHHcCCCEEEEeCCccHHHHHHHHhhcCCceEEeeCCHHHHHHHHHHHHHhh-CCEEEEEcCCccHHHHHHHHH
Confidence 5799999999999999999999999999997765799999999999999999999999 799999999999999999999
Q ss_pred HhhhCCCcEEEEecCCCCcccCCCCC-------CCC-CHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEE
Q 048725 172 DALLDSVPLVAITGQVPRRMIGTDAF-------QET-PIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLI 243 (661)
Q Consensus 172 ~A~~~~iPll~ItG~~p~~~~g~~~~-------q~~-~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I 243 (661)
+|+.+++|||+|+|+++....+++.. |+. |+.++++++|||++++.+++++++.+++||+.|.+++ |||||
T Consensus 80 ~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~i~~~v~~A~~~a~s~~-gPV~l 158 (162)
T cd07038 80 GAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLKMFEEITCAAARLTDPENAAEEIDRVLRTALRES-RPVYI 158 (162)
T ss_pred HHHHcCCCEEEEecCCCccccccccceeecccccchHHHHHHHHhheeEEEEeCCHHHHHHHHHHHHHHHHHCC-CCEEE
Confidence 99999999999999999877666442 333 5899999999999999999999999999999999997 99999
Q ss_pred Eecc
Q 048725 244 DVPK 247 (661)
Q Consensus 244 ~iP~ 247 (661)
+||.
T Consensus 159 ~iP~ 162 (162)
T cd07038 159 EIPR 162 (162)
T ss_pred EccC
Confidence 9984
No 65
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=100.00 E-value=8.8e-37 Score=300.06 Aligned_cols=178 Identities=28% Similarity=0.500 Sum_probs=161.9
Q ss_pred CCCChHHHHHHHhhhcCCCcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCc
Q 048725 451 ESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDG 530 (661)
Q Consensus 451 ~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG 530 (661)
.+++++++++.|++.++++.+++.|+|++..|..++++..+|++|+.++++|+|||++|+|||+++|+|+++|||++|||
T Consensus 2 ~~l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv~i~GDG 81 (196)
T cd02013 2 NPMHPRQVLRELEKAMPEDAIVSTDIGNICSVANSYLRFEKPRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVAIAGDG 81 (196)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHhcCcCCCCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEcch
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHH
Q 048725 531 SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKA 610 (661)
Q Consensus 531 sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~ 610 (661)
+|+|+++||+|++++++|+++||+||++|+++++.|...|+.......+ ..+||+++|++||+++.+|++++
T Consensus 82 ~f~m~~~eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~~~~~~~--------~~~d~~~lA~a~G~~~~~v~~~~ 153 (196)
T cd02013 82 AWGMSMMEIMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTEL--------ESESFAKIAEACGAKGITVDKPE 153 (196)
T ss_pred HHhccHHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCCcccccC--------CCCCHHHHHHHCCCEEEEECCHH
Confidence 9999999999999999999999999999999988776655432111111 12799999999999999999999
Q ss_pred HHHHHHHHHHh---CCCcEEEEEEeCCCC
Q 048725 611 DLRAAIQTMLD---TPGPYLLDVIFPHQE 636 (661)
Q Consensus 611 el~~al~~a~~---~~gp~lIeV~~~~~~ 636 (661)
||+++|+++++ .++|+||||++++++
T Consensus 154 el~~al~~a~~~~~~~~p~liev~v~~~~ 182 (196)
T cd02013 154 DVGPALQKAIAMMAEGKTTVIEIVCDQEL 182 (196)
T ss_pred HHHHHHHHHHhcCCCCCeEEEEEEeCccc
Confidence 99999999998 899999999999776
No 66
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=100.00 E-value=1.2e-36 Score=300.84 Aligned_cols=186 Identities=26% Similarity=0.428 Sum_probs=161.3
Q ss_pred CCChHHHHHHHhhhcCCCcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcc
Q 048725 452 SIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGS 531 (661)
Q Consensus 452 ~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGs 531 (661)
+++++++++.|++.+++|.+++.|+|++.+|..++++..+|++++.++++|+|||++|+|||+++|+|+++||||+||||
T Consensus 7 ~l~~~~~~~~l~~~l~~d~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~~GsmG~~lpaaiGa~la~p~~~vv~i~GDG~ 86 (202)
T cd02006 7 PIKPQRVYEEMNKAFGRDVRYVTTIGLSQIAGAQMLHVYKPRHWINCGQAGPLGWTVPAALGVAAADPDRQVVALSGDYD 86 (202)
T ss_pred CcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcCcCCCCeEEccCCccchhhhhHHHHhHHhhCCCCeEEEEEeChH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCC--CCCcccCCccHHHHHhHcCCCEeeeCCH
Q 048725 532 FIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGD--PSRESEIFPNMLKFAEACGIPGAQVTRK 609 (661)
Q Consensus 532 f~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~--p~~~~~~~~d~~~~A~a~G~~~~~v~~~ 609 (661)
|+|++|||+|++++++|+++||+||++|+++++.|..++........+.. ........+||.++|++||+++.+|+++
T Consensus 87 f~m~~~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~ 166 (202)
T cd02006 87 FQFMIEELAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVTKP 166 (202)
T ss_pred hhccHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCccccccccccccccccCCCCCCHHHHHHHCCCEEEEECCH
Confidence 99999999999999999999999999999998887654432110000000 0000111379999999999999999999
Q ss_pred HHHHHHHHHHHh----CCCcEEEEEEeCCCCC
Q 048725 610 ADLRAAIQTMLD----TPGPYLLDVIFPHQEH 637 (661)
Q Consensus 610 ~el~~al~~a~~----~~gp~lIeV~~~~~~~ 637 (661)
+||+++|+++++ .++|+||||++++.+.
T Consensus 167 ~el~~al~~a~~~~~~~~~p~liev~i~~~~~ 198 (202)
T cd02006 167 EELAAAFEQAKKLMAEHRVPVVVEAILERVTN 198 (202)
T ss_pred HHHHHHHHHHHHhcccCCCcEEEEEEeccccc
Confidence 999999999995 6899999999998764
No 67
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=100.00 E-value=7.8e-35 Score=331.42 Aligned_cols=495 Identities=16% Similarity=0.156 Sum_probs=313.8
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcC---CCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhh
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRS---NNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGA 163 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~---~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~ 163 (661)
.|+|.++++..+.+.|++.++||||++..++.+.|.+. .++.+++..+|.+|..||.|-+.+..| +++ .|+|||+
T Consensus 4 ~~~GneA~A~g~~~ag~~~~~~YPiTP~t~i~e~l~~~~~~~~~~~~~~~~E~~a~~~~~GAs~aG~r-a~t-~ts~~Gl 81 (595)
T TIGR03336 4 LLLGNEAIARGALEAGVGVAAAYPGTPSSEITDTLAKVAKRAGVYFEWSVNEKVAVEVAAGAAWSGLR-AFC-TMKHVGL 81 (595)
T ss_pred eecHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHhhhhccEEEEECcCHHHHHHHHHHHHhcCcc-eEE-EccCCch
Confidence 57899999999999999999999999999999999875 248889999999999999998876665 333 6899999
Q ss_pred HHHHHHHHHhh--hCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhccccccc-ccCCcCcHHHHHHHHHHHhhcCCCce
Q 048725 164 TNLVSGLADAL--LDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNY-LVLDVDDIPRIVREAFLLATSGRPGP 240 (661)
Q Consensus 164 ~N~l~gl~~A~--~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~-~v~~~~~i~~~i~~A~~~a~s~~~GP 240 (661)
.-+.-.|..+. --+.|||++.+++|... ..|.-.+..++...+.|-. ...+++++-+.+.+||+.|..-+ -|
T Consensus 82 ~~~~e~l~~~~~~g~~~~iV~~~~~~~gp~----~~~~~q~d~~~~~~~~~~vl~p~~~qE~~d~~~~Af~lae~~~-~P 156 (595)
T TIGR03336 82 NVAADPLMTLAYTGVKGGLVVVVADDPSMH----SSQNEQDTRHYAKFAKIPCLEPSTPQEAKDMVKYAFELSEKFG-LP 156 (595)
T ss_pred hhhHHHhhhhhhhcCcCceEEEEccCCCCc----cchhhHhHHHHHHhcCCeEECCCCHHHHHHHHHHHHHHHHHHC-CC
Confidence 77777776655 33678999999987543 2232211223333344432 35677889999999999999755 79
Q ss_pred EEEEeccchhhhccCCCC-CCCC--CCCCC---CCCCCCCCC-----H----HHHHHHHHHHHhCCCc--------EEEE
Q 048725 241 VLIDVPKDIQQQLAVPNW-NQPI--KLPGY---MSRLPKEPS-----E----VHLEQIVRLISESKKP--------VLYV 297 (661)
Q Consensus 241 V~I~iP~dv~~~~~~~~~-~~~~--~~~~~---~~~~~~~~~-----~----~~l~~~~~~L~~AkrP--------vIv~ 297 (661)
|.+..-..+.+....-.. +.+. ....+ ..+....+. . +.++++.+...+.+-. ++++
T Consensus 157 V~v~~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~iv 236 (595)
T TIGR03336 157 VILRPTTRISHMRGDVELGEIPKEEVVKGFEKDPERYVMVPAIARVRHKKLLSKQHKLREELNESPLNRLEINGAKIGVI 236 (595)
T ss_pred EEEEEeeeeccceeeEecCCCcccccccCCCCChhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCceeccCCCCEEEE
Confidence 998887655443211000 0000 00000 000000010 1 1222222222221111 2222
Q ss_pred cCCccchHHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccC
Q 048725 298 GGGCLNSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFA 377 (661)
Q Consensus 298 G~g~~~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~ 377 (661)
..|. .....++.++.+|+.+-.- ... .-.|+- .....+++++.+.||++-..... .......+.
T Consensus 237 ~~G~--~~~~a~ea~~~~Gi~~~v~--~~~---~i~Pld--------~~~i~~~~~~~~~vivvEe~~~~-~~~~~~~~~ 300 (595)
T TIGR03336 237 ASGI--AYNYVKEALERLGVDVSVL--KIG---FTYPVP--------EGLVEEFLSGVEEVLVVEELEPV-VEEQVKALA 300 (595)
T ss_pred EcCH--HHHHHHHHHHHcCCCeEEE--EeC---CCCCCC--------HHHHHHHHhcCCeEEEEeCCccH-HHHHHHHHH
Confidence 2221 2233444555556543110 001 112331 23456778899999999765421 000111111
Q ss_pred CC--CeEEEEcCCchhhccCCCCcceEeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCCh
Q 048725 378 SR--AKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFKTFEESIPP 455 (661)
Q Consensus 378 ~~--~~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~ 455 (661)
.. .++..+......+ +. ...-|.....+.|.+. ..... ....+. .....+.+.+..|.++++
T Consensus 301 ~~~~~~v~~~G~~d~fi----~~--~~~Ld~~~i~~~i~~~-~~~~~--~~~~~~-------~~~~~~~r~~~~C~GCp~ 364 (595)
T TIGR03336 301 GTAGLNIKVHGKEDGFL----PR--EGELNPDIVVNALAKF-GLAPS--VTHEKP-------VPKPLPVRPPSLCAGCPH 364 (595)
T ss_pred HhcCCCeEEecccCCcc----Cc--ccCcCHHHHHHHHHHh-CCCcc--cccccc-------cccccCCCCCCCCCCCCC
Confidence 11 1233333321111 11 1122555566665443 21100 000000 011234456778999999
Q ss_pred HHHHHHHhhhcCCCcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccC
Q 048725 456 QYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMN 535 (661)
Q Consensus 456 ~~~~~~l~~~l~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~ 535 (661)
..+++.|++.+++|.+++.|+|++.+|.. .|..++.. +++||+++|+|+|+++++|+++||+++|||+|+|+
T Consensus 365 ~~~~~~l~~~l~~d~ivv~D~G~~~~~~~------~p~~~~~~--~~~mG~~~~~AiGa~~a~p~~~Vv~i~GDG~f~~~ 436 (595)
T TIGR03336 365 RATFYAMKKVADREAIFPSDIGCYTLGIQ------PPLGTVDT--TLCMGASIGVASGLSKAGEKQRIVAFIGDSTFFHT 436 (595)
T ss_pred hHHHHHHHHhccCCcEEecCcchhhcccc------CCccccce--eeccCchHHHHhhhhhcCCCCCEEEEeccchhhhc
Confidence 99999999999999999999999877642 34454443 48999999999999999999999999999999997
Q ss_pred -hHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHH---H
Q 048725 536 -VQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKA---D 611 (661)
Q Consensus 536 -~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~---e 611 (661)
++||+|++++++|+++||+||++|||+.+++...+. ....+. ....+||+++|++||+++.+|.+++ |
T Consensus 437 g~~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~----~~~~~~----~~~~~d~~~ia~a~G~~~~~v~~~~~l~~ 508 (595)
T TIGR03336 437 GIPGLINAVYNKANITVVILDNRITAMTGHQPNPGTG----VTGMGE----ATKEISIEELCRASGVEFVEVVDPLNVKE 508 (595)
T ss_pred CHHHHHHHHHcCCCeEEEEEcCcceeccCCCCCCCCC----CCCCCC----cCCCcCHHHHHHHcCCCEEEEeCcCCHHH
Confidence 999999999999999999999999998543211100 011111 1113799999999999999998874 4
Q ss_pred HHHHHHHHHhCCCcEEEEEEeCCCC
Q 048725 612 LRAAIQTMLDTPGPYLLDVIFPHQE 636 (661)
Q Consensus 612 l~~al~~a~~~~gp~lIeV~~~~~~ 636 (661)
+.++|+++++.+||.||++..+...
T Consensus 509 l~~al~~a~~~~gp~li~v~~~C~l 533 (595)
T TIGR03336 509 TIEVFKAALAAEGVSVIIAKQPCVL 533 (595)
T ss_pred HHHHHHHHHhcCCCEEEEEcccCcc
Confidence 5889999999999999999886543
No 68
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=100.00 E-value=1.9e-35 Score=288.68 Aligned_cols=184 Identities=57% Similarity=0.989 Sum_probs=162.9
Q ss_pred CChHHHHHHHhhhcCCCcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCccc
Q 048725 453 IPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSF 532 (661)
Q Consensus 453 i~~~~~~~~l~~~l~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf 532 (661)
+++.++++.|++.+++|.+++.|+|++..|..++++.++|++|+.++++|+|||++|+|+|++++.|+++||+++|||+|
T Consensus 1 ~~~~~~~~~l~~~l~~~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f 80 (186)
T cd02015 1 IKPQEVIKELSELTPGDAIVTTDVGQHQMWAAQYYRFKKPRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICIDGDGSF 80 (186)
T ss_pred CCHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHHhcccCCCCeEEeCCCccchhchHHHHHHHHHhCCCCeEEEEEcccHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHH
Q 048725 533 IMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADL 612 (661)
Q Consensus 533 ~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el 612 (661)
+|+++||+|++++++|+++||+||++|+++++.|...+........+ ...+||.++|++||+++.+|++.+||
T Consensus 81 ~~~~~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~~~~~~~-------~~~~d~~~~a~a~G~~~~~v~~~~el 153 (186)
T cd02015 81 QMNIQELATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGRYSHTTL-------DSNPDFVKLAEAYGIKGLRVEKPEEL 153 (186)
T ss_pred hccHHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCceeeccC-------CCCCCHHHHHHHCCCceEEeCCHHHH
Confidence 99999999999999999999999999999988776554332111111 11279999999999999999999999
Q ss_pred HHHHHHHHhCCCcEEEEEEeCCCCCcCCcCC
Q 048725 613 RAAIQTMLDTPGPYLLDVIFPHQEHVLPMIP 643 (661)
Q Consensus 613 ~~al~~a~~~~gp~lIeV~~~~~~~~~p~~~ 643 (661)
+++|+++++.++|+||||++++++...|..+
T Consensus 154 ~~al~~a~~~~~p~liev~~~~~~~~~~~~~ 184 (186)
T cd02015 154 EAALKEALASDGPVLLDVLVDPEENVLPMVP 184 (186)
T ss_pred HHHHHHHHhCCCCEEEEEEeCCCcccCCcCC
Confidence 9999999999999999999998776555443
No 69
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=100.00 E-value=1.7e-35 Score=286.03 Aligned_cols=173 Identities=31% Similarity=0.566 Sum_probs=156.2
Q ss_pred hHHHHHHHhhhcCCCcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCccccc
Q 048725 455 PQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIM 534 (661)
Q Consensus 455 ~~~~~~~l~~~l~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~ 534 (661)
|+++++.|++.++++.++++|+|++..|..++++..++++|+.+.++|+|||++|+|+|+++++|+++||+|+|||+|+|
T Consensus 1 p~~~~~~l~~~l~~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~m 80 (177)
T cd02010 1 PQRIVHDLRAVMGDDDIVLLDVGAHKIWMARYYRTYAPNTCLISNGLATMGVALPGAIGAKLVYPDRKVVAVSGDGGFMM 80 (177)
T ss_pred CHHHHHHHHHHCCCCcEEEecCcHHHHHHHHhCCcCCCCCEEeCCCChhhhhHHHHHHHHHHhCCCCcEEEEEcchHHHh
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHH
Q 048725 535 NVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRA 614 (661)
Q Consensus 535 ~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~ 614 (661)
+++||+|++++++|+++||+||++|+++++.|...+. ......+ ..+||.++|++||+++.+|++++||++
T Consensus 81 ~~~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~-~~~~~~~--------~~~d~~~~a~a~G~~~~~v~~~~el~~ 151 (177)
T cd02010 81 NSQELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYG-RDSGVDF--------GNPDFVKYAESFGAKGYRIESADDLLP 151 (177)
T ss_pred HHHHHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcC-CcccCcC--------CCCCHHHHHHHCCCEEEEECCHHHHHH
Confidence 9999999999999999999999999999766655432 2122111 127999999999999999999999999
Q ss_pred HHHHHHhCCCcEEEEEEeCCCC
Q 048725 615 AIQTMLDTPGPYLLDVIFPHQE 636 (661)
Q Consensus 615 al~~a~~~~gp~lIeV~~~~~~ 636 (661)
+|+++++.++|.||||++++.+
T Consensus 152 al~~a~~~~~p~liev~~~~~~ 173 (177)
T cd02010 152 VLERALAADGVHVIDCPVDYSE 173 (177)
T ss_pred HHHHHHhCCCCEEEEEEecccc
Confidence 9999999999999999998755
No 70
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=100.00 E-value=8.4e-35 Score=288.05 Aligned_cols=189 Identities=21% Similarity=0.305 Sum_probs=161.1
Q ss_pred HHHHHHhhhcCCCcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccCh
Q 048725 457 YAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNV 536 (661)
Q Consensus 457 ~~~~~l~~~l~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~ 536 (661)
++++.|++.++++.+++.|+|++.+|..++++..+|++|+.+.++|+|||++|+|+|+++++|+++||+++|||+|+|++
T Consensus 3 ~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~gsmG~~lpaAiGa~la~p~~~vv~i~GDGsf~m~~ 82 (205)
T cd02003 3 EVLGALNEAIGDDDVVINAAGSLPGDLHKLWRARTPGGYHLEYGYSCMGYEIAAGLGAKLAKPDREVYVLVGDGSYLMLH 82 (205)
T ss_pred hHHHHHHHhCCCCCEEEECCCcchHHHHHhCCcCCCCcEEcCCCcchhhhHHHHHHHHHHhCCCCeEEEEEccchhhccH
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCC-C-----CcccCCccHHHHHhHcCCCEeeeCCHH
Q 048725 537 QELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDP-S-----RESEIFPNMLKFAEACGIPGAQVTRKA 610 (661)
Q Consensus 537 ~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p-~-----~~~~~~~d~~~~A~a~G~~~~~v~~~~ 610 (661)
+||+|++++++|+++||+||++|++++++|...+... ....+... . ......+||.++|++||+++.+|++++
T Consensus 83 ~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~ 161 (205)
T cd02003 83 SEIVTAVQEGLKIIIVLFDNHGFGCINNLQESTGSGS-FGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVKTIE 161 (205)
T ss_pred HHHHHHHHcCCCCEEEEEECCccHHHHHHHHHhcCcc-ccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEECCHH
Confidence 9999999999999999999999999998876543211 11111100 0 000123799999999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEEEeCCCCCcCCcCCCCCcccc
Q 048725 611 DLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFKD 650 (661)
Q Consensus 611 el~~al~~a~~~~gp~lIeV~~~~~~~~~p~~~~~~~~~~ 650 (661)
||+++|+++++.+||.||||++++.+. .|....|++
T Consensus 162 el~~al~~a~~~~gp~lIeV~v~~~~~----~~~~~~~~~ 197 (205)
T cd02003 162 ELKAALAKAKASDRTTVIVIKTDPKSM----TPGYGSWWD 197 (205)
T ss_pred HHHHHHHHHHhCCCCEEEEEEeecccc----CCCCCCeEe
Confidence 999999999999999999999987663 344455665
No 71
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=100.00 E-value=1.9e-33 Score=298.28 Aligned_cols=324 Identities=25% Similarity=0.350 Sum_probs=238.5
Q ss_pred CCCEEEeccCCCcHHHHHHHHc-CCCCeEEccCChhHHHHHHHHHHHHhCCcE-EEEEccchh-hHHHHHHHHHhhhCCC
Q 048725 102 GVTDVFAYPGGASMEIHQALTR-SNNIRNVLPRHEQGGIFAAEGYARSSGKPG-ICIATSGPG-ATNLVSGLADALLDSV 178 (661)
Q Consensus 102 GV~~vFg~PG~~~~~l~~aL~~-~~~i~~v~~~hE~~A~~~A~Gyar~tg~~g-v~~~tsGpG-~~N~l~gl~~A~~~~i 178 (661)
||++++|+|.+...+|++.+.+ .+.+++|.+.||..|+.+|.||+.+||+.+ |.|-.||.| +.|.++.|++....++
T Consensus 1 gi~~~~gvP~s~l~~~~~~~~~~~~~~~~i~~~~E~~av~iaaG~~latG~~~~v~mQnSGlGn~vN~l~SL~~~~~y~i 80 (361)
T TIGR03297 1 GFDFFSGVPDSLLKPFCNYITDNNRDLRHVIAANEGAAVGLAAGAYLATGKRAAVYMQNSGLGNAVNPLTSLADTEVYDI 80 (361)
T ss_pred CceEEEeCcHHHHHHHHHHHHhcCCCceEEecCCchHHHHHHHHHHHhcCCccEEEEecCchhhhhhHHHhhccccccCc
Confidence 7999999999999999999994 447999999999999999999999976655 555778877 6677777777789999
Q ss_pred cEEEEecCCCCcccCCCCCCCCCHHHHhhcc-----cccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccchhhhc
Q 048725 179 PLVAITGQVPRRMIGTDAFQETPIVEVTRSI-----TKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQL 253 (661)
Q Consensus 179 Pll~ItG~~p~~~~g~~~~q~~~~~~~~~~i-----tk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~dv~~~~ 253 (661)
|||+|+|.|...-. .+.-|...+-.+..++ .+|...-.+.++....+++|++.+.... .|+.|-++.+.+...
T Consensus 81 P~l~~i~~RG~~g~-~depqh~~~G~~t~~lL~~~~i~~~~~~~~~~~~~~~~~~a~~~~~~~~-~p~a~l~~~~~~~~~ 158 (361)
T TIGR03297 81 PLLLIVGWRGEPGV-HDEPQHVKQGRITLSLLDALEIPWEVLSTDNDEALAQIERALAHALATS-RPYALVVRKGTFASY 158 (361)
T ss_pred CeeEEEecCCCCCC-CCCchhhHHhHHHHHHHHHcCCCEEECCCChHHHHHHHHHHHHHHHHHC-CCEEEEEcccccccc
Confidence 99999998754311 2233433332322222 1222222446677778888888877654 688888876653210
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCccchHHHHHHHHHHhCCCeeecCCCCCCCCCCC
Q 048725 254 AVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLGSFPGTD 333 (661)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~~a~~~l~~lae~lg~PV~tt~~gkg~~p~~h 333 (661)
.+ . + . +. .
T Consensus 159 ---------~~-----------~---------------~------------------------~------------~~-~ 166 (361)
T TIGR03297 159 ---------KL-----------K---------------G------------------------E------------PA-N 166 (361)
T ss_pred ---------cc-----------c---------------c------------------------C------------CC-C
Confidence 00 0 0 0 00 0
Q ss_pred CCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcceEeccHHHHHHHH
Q 048725 334 ELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGI 413 (661)
Q Consensus 334 pl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L 413 (661)
.
T Consensus 167 ~------------------------------------------------------------------------------- 167 (361)
T TIGR03297 167 P------------------------------------------------------------------------------- 167 (361)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEEEEcCChhHHHHHhhcccc-C-
Q 048725 414 NRILGGKDAEGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYR-R- 491 (661)
Q Consensus 414 ~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~~~~~~~~~~-~- 491 (661)
....+++..+++.+.+.++++.+|+++.|.... .++... .
T Consensus 168 -----------------------------------~~~~~~r~~ai~~i~~~l~~~~iVV~~~G~~s~---el~~~~~~~ 209 (361)
T TIGR03297 168 -----------------------------------LPTLMTREEAIAAILDHLPDNTVIVSTTGKTSR---ELYELRDRI 209 (361)
T ss_pred -----------------------------------CcCCCCHHHHHHHHHHhCCCCCEEEECCCCCcH---HHHHhhccc
Confidence 000134456667777777888888888886442 222222 2
Q ss_pred ----CCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCC-CeEEEEEeCCcchhHHHHH
Q 048725 492 ----PRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKL-PIKILLLNNQHLGMVMQWE 566 (661)
Q Consensus 492 ----p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~l-pv~ivV~NN~g~g~~~~~~ 566 (661)
++++++ +|+||+++|+|+|+++++|+++|||++|||+|+|+++||.|++++++ |+++||+||++|+++..
T Consensus 210 ~~~~~~~f~~---~GsMG~a~p~AlG~ala~p~r~Vv~i~GDGsflm~~~eL~t~~~~~~~nli~VVlNNg~~~~~g~-- 284 (361)
T TIGR03297 210 GQGHARDFLT---VGSMGHASQIALGLALARPDQRVVCLDGDGAALMHMGGLATIGTQGPANLIHVLFNNGAHDSVGG-- 284 (361)
T ss_pred ccCCCCceEe---echhhhHHHHHHHHHHHCCCCCEEEEEChHHHHHHHHHHHHHHHhCCCCeEEEEEcCccccccCC--
Confidence 566765 38999999999999999999999999999999999999999999996 89999999999987521
Q ss_pred HHhhcccccccccCCCCCcccCCccHHHHHhHcCC-CEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCCC
Q 048725 567 DRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGI-PGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEH 637 (661)
Q Consensus 567 ~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~-~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~~ 637 (661)
.. +. + ..+||.++|++||+ ++.+|++.+||+++|+++++.+||.||||+++++..
T Consensus 285 ------q~--~~-~-------~~~d~~~iA~a~G~~~~~~v~~~~eL~~al~~a~~~~gp~lIeV~v~~g~~ 340 (361)
T TIGR03297 285 ------QP--TV-S-------QHLDFAQIAKACGYAKVYEVSTLEELETALTAASSANGPRLIEVKVRPGSR 340 (361)
T ss_pred ------cC--CC-C-------CCCCHHHHHHHCCCceEEEeCCHHHHHHHHHHHHhCCCcEEEEEEecCCCc
Confidence 10 00 0 12799999999997 688999999999999999999999999999998663
No 72
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=100.00 E-value=1.3e-33 Score=272.34 Aligned_cols=172 Identities=31% Similarity=0.398 Sum_probs=154.2
Q ss_pred hHHHHHHHhhhcCCCcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCccccc
Q 048725 455 PQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIM 534 (661)
Q Consensus 455 ~~~~~~~l~~~l~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~ 534 (661)
|+++++.|++.++++.++++|+|++..|..++++...|++++.++++|+||+++|+|+|++++.|+++||+++|||+|+|
T Consensus 1 p~~~~~~l~~~l~~~~iiv~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lp~AiGa~la~~~~~vv~i~GDG~f~~ 80 (172)
T cd02004 1 PYRVLHELQEALPDDAIIVSDGGNTMDWARYILRPRKPRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLVEGDGAFGF 80 (172)
T ss_pred CHHHHHHHHHHCCCCcEEEEcCchHHHHHHHHccccCCCcEecCCCCCcccchHHHHHHHHHhCCCCeEEEEEcchhhcC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHH
Q 048725 535 NVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRA 614 (661)
Q Consensus 535 ~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~ 614 (661)
+++||+|++++++|+++||+||++|+++++.|+..+...+.. +. ....+||.++|++||+++.+|++.+||++
T Consensus 81 ~~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~---~~----~~~~~d~~~la~a~G~~~~~v~~~~el~~ 153 (172)
T cd02004 81 SGMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLGLPV---TT----LLPDTRYDLVAEAFGGKGELVTTPEELKP 153 (172)
T ss_pred CHHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccCCCce---ec----cCCCCCHHHHHHHCCCeEEEECCHHHHHH
Confidence 999999999999999999999999999988776554211111 11 11237999999999999999999999999
Q ss_pred HHHHHHhCCCcEEEEEEeC
Q 048725 615 AIQTMLDTPGPYLLDVIFP 633 (661)
Q Consensus 615 al~~a~~~~gp~lIeV~~~ 633 (661)
+|+++++.++|.||||+++
T Consensus 154 al~~a~~~~~p~liev~i~ 172 (172)
T cd02004 154 ALKRALASGKPALINVIID 172 (172)
T ss_pred HHHHHHHcCCCEEEEEEcC
Confidence 9999999999999999985
No 73
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=100.00 E-value=5.1e-34 Score=270.42 Aligned_cols=155 Identities=54% Similarity=0.857 Sum_probs=149.7
Q ss_pred HHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHH
Q 048725 92 DILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSGLA 171 (661)
Q Consensus 92 d~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~gl~ 171 (661)
|+|++.|+++||+++||+||+.+.+|++++. .+++++|.++||++|++||+||+|++||+++|++|+|||++|+++++.
T Consensus 1 ~~i~~~L~~~Gv~~vfg~pg~~~~~l~~~~~-~~~~~~i~~~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~ 79 (155)
T cd07035 1 DALVEALKAEGVDHVFGVPGGAILPLLDALA-RSGIRYILVRHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLA 79 (155)
T ss_pred CHHHHHHHHcCCCEEEECCCCchHHHHHHhc-cCCCEEEEeCCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHH
Confidence 5799999999999999999999999999998 457999999999999999999999999999999999999999999999
Q ss_pred HhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 048725 172 DALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPK 247 (661)
Q Consensus 172 ~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~ 247 (661)
+|+.+++|||+|+|+++....+++.+|+.|+.+++++++||++++.+++++.+.+++|++.|.++|+|||||+||.
T Consensus 80 ~A~~~~~Pll~i~~~~~~~~~~~~~~q~~d~~~~~~~~~~~~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip~ 155 (155)
T cd07035 80 NAYLDSIPLLVITGQRPTAGEGRGAFQEIDQVALFRPITKWAYRVTSPEEIPEALRRAFRIALSGRPGPVALDLPK 155 (155)
T ss_pred HHHhhCCCEEEEeCCCccccccCCcccccCHHHHHHHHhceEEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEecC
Confidence 9999999999999999998888888999999999999999999999999999999999999999989999999984
No 74
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=100.00 E-value=4.6e-34 Score=275.83 Aligned_cols=172 Identities=20% Similarity=0.245 Sum_probs=150.7
Q ss_pred hHHHHHHHhhhcCCCcEEEEcCChhHHHHHhhccc-cCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccc
Q 048725 455 PQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKY-RRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFI 533 (661)
Q Consensus 455 ~~~~~~~l~~~l~~d~iv~~d~G~~~~~~~~~~~~-~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~ 533 (661)
...+++.|++.+++|.+++.|+|++..|..++++. ..|++++.+.++|+||+++|+|||+++|. +++||+++|||||+
T Consensus 3 ~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~aiGa~la~-~~~Vv~i~GDGsf~ 81 (175)
T cd02009 3 EPALARALPDHLPEGSQLFVGNSMPIRDLDLFALPSDKTVRVFANRGASGIDGTLSTALGIALAT-DKPTVLLTGDLSFL 81 (175)
T ss_pred hHHHHHHHHHhCCCCCeEEEECCHHHHHHHHccCccCCCceEEecCCccchhhHHHHHHHHHhcC-CCCEEEEEehHHHH
Confidence 35688999999999999999999999999999999 89999999999999999999999999998 99999999999999
Q ss_pred cChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHH
Q 048725 534 MNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLR 613 (661)
Q Consensus 534 ~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~ 613 (661)
|+++||+|++++++|+++||+||++|++++..+...+.. .....+..+ ..+||.++|++||+++.+|++++||+
T Consensus 82 m~~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~~~-~~~~~~~~~-----~~~d~~~lA~a~G~~~~~v~~~~el~ 155 (175)
T cd02009 82 HDLNGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASFED-EFERLFGTP-----QGLDFEHLAKAYGLEYRRVSSLDELE 155 (175)
T ss_pred HhHHHHHhccccCCCeEEEEEECCCCchheeccCCcccc-hhhhhhcCC-----CCCCHHHHHHHcCCCeeeCCCHHHHH
Confidence 999999999999999999999999999986554311111 011111111 13799999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEEEeC
Q 048725 614 AAIQTMLDTPGPYLLDVIFP 633 (661)
Q Consensus 614 ~al~~a~~~~gp~lIeV~~~ 633 (661)
++|+++++.++|.||||+++
T Consensus 156 ~al~~a~~~~~p~lIev~v~ 175 (175)
T cd02009 156 QALESALAQDGPHVIEVKTD 175 (175)
T ss_pred HHHHHHHhCCCCEEEEEeCC
Confidence 99999999999999999985
No 75
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=100.00 E-value=3.7e-33 Score=270.46 Aligned_cols=175 Identities=32% Similarity=0.534 Sum_probs=157.5
Q ss_pred CChHHHHHHHhhhcCCCcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCccc
Q 048725 453 IPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSF 532 (661)
Q Consensus 453 i~~~~~~~~l~~~l~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf 532 (661)
++++.+++.|++.++++.++++|+|++..|..++++..++++|+.+.++|+||+++|+|+|+++++++++||+++|||+|
T Consensus 2 ~~~~~~~~~l~~~~~~~~ii~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i~GDG~f 81 (178)
T cd02014 2 IHPERVAAELNKRAPDDAIFTIDVGNVTVWAARHLRMNGKQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALSGDGGF 81 (178)
T ss_pred CCHHHHHHHHHhHCCCCeEEEEcCcHHHHHHHHhcccCCCCcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEEEcchHH
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHH
Q 048725 533 IMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADL 612 (661)
Q Consensus 533 ~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el 612 (661)
+|+++||+|++++++|+++||+||++|+|+++.+...+ ... .+.. ...+||.++|++||+++.++++++|+
T Consensus 82 ~~~~~el~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~-~~~----~~~~----~~~~d~~~la~a~G~~~~~v~~~~el 152 (178)
T cd02014 82 AMLMGDLITAVKYNLPVIVVVFNNSDLGFIKWEQEVMG-QPE----FGVD----LPNPDFAKIAEAMGIKGIRVEDPDEL 152 (178)
T ss_pred HhhHHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhc-CCc----eecc----CCCCCHHHHHHHCCCeEEEeCCHHHH
Confidence 99999999999999999999999999999876664432 111 1111 11279999999999999999999999
Q ss_pred HHHHHHHHhCCCcEEEEEEeCCCC
Q 048725 613 RAAIQTMLDTPGPYLLDVIFPHQE 636 (661)
Q Consensus 613 ~~al~~a~~~~gp~lIeV~~~~~~ 636 (661)
+++|+++++.++|+||||++++.+
T Consensus 153 ~~~l~~a~~~~~p~liev~~~~~~ 176 (178)
T cd02014 153 EAALDEALAADGPVVIDVVTDPNE 176 (178)
T ss_pred HHHHHHHHhCCCCEEEEEEeCCCC
Confidence 999999999999999999998654
No 76
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=100.00 E-value=1.7e-32 Score=266.64 Aligned_cols=172 Identities=26% Similarity=0.343 Sum_probs=152.9
Q ss_pred CChHHHHHHHhhhcCCCcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCccc
Q 048725 453 IPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSF 532 (661)
Q Consensus 453 i~~~~~~~~l~~~l~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf 532 (661)
++++.+++.|++.++++.+++.|+|++. |..++++..++++++.+.++|+||+++|+|+|++++.|+++||+++|||+|
T Consensus 2 l~~~~~~~~l~~~l~~~~iiv~d~g~~~-~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG~f 80 (183)
T cd02005 2 LTQARLWQQVQNFLKPNDILVAETGTSW-FGALDLKLPKGTRFISQPLWGSIGYSVPAALGAALAAPDRRVILLVGDGSF 80 (183)
T ss_pred CCHHHHHHHHHHhcCCCCEEEECCchHH-HhhhhccCCCCCEEEeccchhhHhhhHHHHHHHHHhCCCCeEEEEECCchh
Confidence 6788999999999999999999999975 788899989999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcC----CCEeeeCC
Q 048725 533 IMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACG----IPGAQVTR 608 (661)
Q Consensus 533 ~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G----~~~~~v~~ 608 (661)
+|+++||+|++++++|+++||+||++|++++..+.. ...... ...+||.++|++|| +++.+|++
T Consensus 81 ~~~~~el~ta~~~~~p~~ivV~nN~~~~~~~~~~~~----~~~~~~--------~~~~d~~~ia~a~G~~~~~~~~~v~~ 148 (183)
T cd02005 81 QMTVQELSTMIRYGLNPIIFLINNDGYTIERAIHGP----EASYND--------IANWNYTKLPEVFGGGGGGLSFRVKT 148 (183)
T ss_pred hccHHHHHHHHHhCCCCEEEEEECCCcEEEEEeccC----CcCccc--------CCCCCHHHHHHHhCCCccccEEEecC
Confidence 999999999999999999999999999997543321 000111 11279999999999 79999999
Q ss_pred HHHHHHHHHHHHh-CCCcEEEEEEeCCCCC
Q 048725 609 KADLRAAIQTMLD-TPGPYLLDVIFPHQEH 637 (661)
Q Consensus 609 ~~el~~al~~a~~-~~gp~lIeV~~~~~~~ 637 (661)
.+||+++|+++++ .++|.||||++++++.
T Consensus 149 ~~el~~al~~a~~~~~~p~liev~~~~~~~ 178 (183)
T cd02005 149 EGELDEALKDALFNRDKLSLIEVILPKDDA 178 (183)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEcCcccC
Confidence 9999999999998 8999999999987663
No 77
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=100.00 E-value=9.5e-32 Score=260.87 Aligned_cols=177 Identities=30% Similarity=0.465 Sum_probs=154.2
Q ss_pred CChHHHHHHHhhhcCCCcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCccc
Q 048725 453 IPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSF 532 (661)
Q Consensus 453 i~~~~~~~~l~~~l~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf 532 (661)
+++.++++.|++.++++.+++.|+|.+..|..++++..+|++++.+++ |+||+++|+|+|+++|.|+++||+++|||+|
T Consensus 1 ~~~~~~~~~l~~~l~~~~~iv~d~g~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~lp~aiGaala~~~~~vv~i~GDG~f 79 (178)
T cd02002 1 LTPEYLAAALAAALPEDAIIVDEAVTNGLPLRDQLPLTRPGSYFTLRG-GGLGWGLPAAVGAALANPDRKVVAIIGDGSF 79 (178)
T ss_pred CCHHHHHHHHHhhCCCCeEEEecCCcccHHHHHhcccCCCCCeeccCC-ccccchHHHHHHHHhcCCCCeEEEEEcCchh
Confidence 367889999999999999999999999999999999989999999988 9999999999999999999999999999999
Q ss_pred ccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccc-cccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHH
Q 048725 533 IMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANR-AHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKAD 611 (661)
Q Consensus 533 ~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~-~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~e 611 (661)
+|+++||+|++++++|+++||+||++|+++++.|...+.... ...+... ......+||.++|++||+++.+|++.+|
T Consensus 80 ~~~~~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~a~a~G~~~~~v~~~~e 157 (178)
T cd02002 80 MYTIQALWTAARYGLPVTVVILNNRGYGALRSFLKRVGPEGPGENAPDGL--DLLDPGIDFAAIAKAFGVEAERVETPEE 157 (178)
T ss_pred hccHHHHHHHHHhCCCeEEEEEcCccHHHHHHHHHHHcCCCccccccccc--ccCCCCCCHHHHHHHcCCceEEeCCHHH
Confidence 999999999999999999999999999999888766543210 0001111 0011137999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEEe
Q 048725 612 LRAAIQTMLDTPGPYLLDVIF 632 (661)
Q Consensus 612 l~~al~~a~~~~gp~lIeV~~ 632 (661)
|+++++++++.++|+||||++
T Consensus 158 l~~al~~a~~~~~p~vi~v~v 178 (178)
T cd02002 158 LDEALREALAEGGPALIEVVV 178 (178)
T ss_pred HHHHHHHHHhCCCCEEEEEEC
Confidence 999999999999999999975
No 78
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.98 E-value=7.1e-32 Score=255.13 Aligned_cols=151 Identities=45% Similarity=0.717 Sum_probs=134.2
Q ss_pred cCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEE
Q 048725 475 GVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLL 554 (661)
Q Consensus 475 d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~ 554 (661)
|+|++.+|..++++..+|++|+.+.++++||+++|+|+|+++++|+++||+++|||+|+|+++||+|++++++|+++||+
T Consensus 1 D~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i~GDG~f~~~~~el~ta~~~~~~v~~vv~ 80 (153)
T PF02775_consen 1 DIGCHTMWAAQYLRVRRPRRFLTSGGFGSMGYALPAAIGAALARPDRPVVAITGDGSFLMSLQELATAVRYGLPVVIVVL 80 (153)
T ss_dssp -SSHHHHHHHHHSCCSSTTEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHHGGGHHHHHHTTSSEEEEEE
T ss_pred CcChhHHHHHHhcCcCCCCeEEcCCCccccCCHHHhhhHHHhhcCcceeEEecCCcceeeccchhHHHhhccceEEEEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCH--HHHHHHHHHHHhCCCcEEEEE
Q 048725 555 NNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRK--ADLRAAIQTMLDTPGPYLLDV 630 (661)
Q Consensus 555 NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~--~el~~al~~a~~~~gp~lIeV 630 (661)
||++|++++.++...+.......... ....+||.++|++||+++.+|++. +||+++|+++++.+||+||||
T Consensus 81 nN~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~~~~gp~vIeV 153 (153)
T PF02775_consen 81 NNGGYGMTGGQQTPFGGGRFSGVDGK-----TFPNPDFAALAEAFGIKGARVTTPDPEELEEALREALESGGPAVIEV 153 (153)
T ss_dssp ESSBSHHHHHHHHHTTSTCHHSTBTT-----TSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHHHSSSEEEEEE
T ss_pred eCCcceEeccccccCcCccccccccc-----ccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHHhCCCcEEEEc
Confidence 99999999888777664332221100 112379999999999999999999 999999999999999999998
No 79
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=99.97 E-value=5.6e-31 Score=250.92 Aligned_cols=152 Identities=26% Similarity=0.238 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHc----CCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 048725 90 GADILVEALERQGVTDVFAYPGGASMEIHQALTR----SNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATN 165 (661)
Q Consensus 90 gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~----~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N 165 (661)
|+|+|++.|+++||+++||+||+.+.+++++|.+ .++|++|.++||++|++||+||+|.+++ +|++|+|||++|
T Consensus 1 g~e~i~~~L~~~gv~~vfg~PG~~~~~~~~~l~~~~~~~~~i~~i~~~~E~~A~~~A~g~~r~~~~--v~~~~~gpG~~n 78 (160)
T cd07034 1 GNEAVARGALAAGVDVVAAYPITPSTEIAETLAKAVLGELGGVVVQAESEHAAAEAAIGASAAGAR--AMTATSGPGLNL 78 (160)
T ss_pred ChHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHHHHhccCCCcEEEEeCCHHHHHHHHHHHHhhCCc--EEEeeCcchHHH
Confidence 5799999999999999999999999999999974 4579999999999999999999998776 888999999999
Q ss_pred HHHHHHHhhhCCCcEEEEecCCCCcccC--CCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEE
Q 048725 166 LVSGLADALLDSVPLVAITGQVPRRMIG--TDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLI 243 (661)
Q Consensus 166 ~l~gl~~A~~~~iPll~ItG~~p~~~~g--~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I 243 (661)
++++|++|+.+++|||+|+|+++....+ ...+|++|+..++++ +||++++.+++++++.+++||+.|.+++ |||+|
T Consensus 79 ~~~~l~~a~~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~a~~~~-~Pv~l 156 (160)
T cd07034 79 MAEALYLAAGAELPLVIVVAQRPGPSTGLPKPDQSDLMAARYGGH-PWPVLAPSSVQEAFDLALEAFELAEKYR-LPVIV 156 (160)
T ss_pred HHHHHHHHHhCCCCEEEEEeeCCCCCCCCCCcCcHHHHHHHhCCC-CEEEEeCCCHHHHHHHHHHHHHHHHHhC-CCEEE
Confidence 9999999999999999999999987666 445677899999999 9999999999999999999999999998 89998
Q ss_pred Ee
Q 048725 244 DV 245 (661)
Q Consensus 244 ~i 245 (661)
-+
T Consensus 157 ~~ 158 (160)
T cd07034 157 LS 158 (160)
T ss_pred Ec
Confidence 65
No 80
>PRK06163 hypothetical protein; Provisional
Probab=99.97 E-value=7.1e-30 Score=250.36 Aligned_cols=162 Identities=23% Similarity=0.435 Sum_probs=138.8
Q ss_pred CCCChHHHHHHHhhhcCCCcEEEEcCCh--hHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEEC
Q 048725 451 ESIPPQYAIQVLDELTNGEAIISTGVGQ--HQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDG 528 (661)
Q Consensus 451 ~~i~~~~~~~~l~~~l~~d~iv~~d~G~--~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~G 528 (661)
..+.-+++++.|.+.++++.+++.|+|+ +.+|..+ ..+++++ .+|+|||++|+|+|+++|+|+++||+++|
T Consensus 11 ~~~~~~~~i~~l~~~l~~~~~iv~D~G~~~~~~~~~~----~~~~~~~---~~GsMG~glpaAiGaalA~p~r~Vv~i~G 83 (202)
T PRK06163 11 KVMNRFDLTCRLVAKLKDEEAVIGGIGNTNFDLWAAG----QRPQNFY---MLGSMGLAFPIALGVALAQPKRRVIALEG 83 (202)
T ss_pred CCcCHHHHHHHHHHhcCCCCEEEECCCccHHHHHHhh----cCCCCeE---eecccccHHHHHHHHHHhCCCCeEEEEEc
Confidence 3467788999999999998899999997 5688775 3555666 37999999999999999999999999999
Q ss_pred CcccccChHHHHHHHHc-CCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCC-Eeee
Q 048725 529 DGSFIMNVQELATIKVE-KLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIP-GAQV 606 (661)
Q Consensus 529 DGsf~~~~~eL~ta~~~-~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~-~~~v 606 (661)
||+|+|+++||+|++++ ++|+++||+||++|++... . .. ... ..+||.++|++||++ +.+|
T Consensus 84 DG~f~m~~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~--------~---~~-~~~-----~~~Df~~lA~a~G~~~~~~v 146 (202)
T PRK06163 84 DGSLLMQLGALGTIAALAPKNLTIIVMDNGVYQITGG--------Q---PT-LTS-----QTVDVVAIARGAGLENSHWA 146 (202)
T ss_pred chHHHHHHHHHHHHHHhcCCCeEEEEEcCCchhhcCC--------c---cC-CCC-----CCCCHHHHHHHCCCceEEEe
Confidence 99999999999999987 6899999999999998421 0 01 010 127999999999998 6799
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEEeCCCC
Q 048725 607 TRKADLRAAIQTMLDTPGPYLLDVIFPHQE 636 (661)
Q Consensus 607 ~~~~el~~al~~a~~~~gp~lIeV~~~~~~ 636 (661)
++.+||+++|+++++.++|.||||++++..
T Consensus 147 ~~~~el~~al~~a~~~~~p~lIeV~i~~~~ 176 (202)
T PRK06163 147 ADEAHFEALVDQALSGPGPSFIAVRIDDKP 176 (202)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEEEecCCC
Confidence 999999999999999999999999998765
No 81
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.97 E-value=5.2e-30 Score=242.49 Aligned_cols=154 Identities=25% Similarity=0.313 Sum_probs=134.5
Q ss_pred HHHHHHHhhhcCCCcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccC
Q 048725 456 QYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMN 535 (661)
Q Consensus 456 ~~~~~~l~~~l~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~ 535 (661)
..+++.|.+.+ +|.+|++|+|++..|. ++....|++|+. +|+||+++|+|+|++++.| ++||+++|||+|+|+
T Consensus 2 ~~~~~~l~~~l-~d~~vv~d~G~~~~~~--~~~~~~~~~~~~---~gsmG~~lp~AiGa~~a~~-~~Vv~i~GDG~f~m~ 74 (157)
T cd02001 2 IAAIAEIIEAS-GDTPIVSTTGYASREL--YDVQDRDGHFYM---LGSMGLAGSIGLGLALGLS-RKVIVVDGDGSLLMN 74 (157)
T ss_pred HHHHHHHHHhC-CCCEEEeCCCHhHHHH--HHhhcCCCCEEe---ecchhhHHHHHHHHHhcCC-CcEEEEECchHHHhc
Confidence 35778888888 7999999999988877 444467888886 7999999999999999986 899999999999999
Q ss_pred hHHHHHHHHc-CCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHH
Q 048725 536 VQELATIKVE-KLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRA 614 (661)
Q Consensus 536 ~~eL~ta~~~-~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~ 614 (661)
++||+|++++ ++|+++||+||++|+++.. + + ... ..+||.++|++||+++++|++++||++
T Consensus 75 ~~el~t~~~~~~~~i~~vV~nN~~~g~~~~-~------~----~~~-------~~~d~~~lA~a~G~~~~~v~~~~el~~ 136 (157)
T cd02001 75 PGVLLTAGEFTPLNLILVVLDNRAYGSTGG-Q------P----TPS-------SNVNLEAWAAACGYLVLSAPLLGGLGS 136 (157)
T ss_pred ccHHHHHHHhcCCCEEEEEEeCccccccCC-c------C----CCC-------CCCCHHHHHHHCCCceEEcCCHHHHHH
Confidence 9999999999 5999999999999998731 1 0 001 027999999999999999999999999
Q ss_pred HHHHHHhCCCcEEEEEEeCC
Q 048725 615 AIQTMLDTPGPYLLDVIFPH 634 (661)
Q Consensus 615 al~~a~~~~gp~lIeV~~~~ 634 (661)
+|+++++.++|+||||.+++
T Consensus 137 al~~a~~~~gp~vi~v~i~~ 156 (157)
T cd02001 137 EFAGLLATTGPTLLHAPIAP 156 (157)
T ss_pred HHHHHHhCCCCEEEEEEecC
Confidence 99999999999999999975
No 82
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.97 E-value=1.2e-29 Score=245.37 Aligned_cols=162 Identities=28% Similarity=0.480 Sum_probs=137.5
Q ss_pred HHHHHHHhhhcCCCcEEEEcCChhHHHHHhhccc-cCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCccccc
Q 048725 456 QYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKY-RRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIM 534 (661)
Q Consensus 456 ~~~~~~l~~~l~~d~iv~~d~G~~~~~~~~~~~~-~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~ 534 (661)
..+++.|++.++ +.++++|+|++.. .++.. ..|++++. +|+||+++|+|+|+++|+ +++||+++|||+|+|
T Consensus 2 ~~~~~~l~~~l~-d~iiv~d~G~~~~---~~~~~~~~~~~~~~---~gsmG~~lpaAiGa~la~-~~~Vv~i~GDG~f~m 73 (181)
T TIGR03846 2 IDAIRAIASYLE-DELVVSNIGVPSK---ELYAIRDRPLNFYM---LGSMGLASSIGLGLALAT-DRTVIVIDGDGSLLM 73 (181)
T ss_pred HHHHHHHHHhCC-CCEEEecCCHhHH---HHHhhhcCCCCeee---ccccccHHHHHHHHHHcC-CCcEEEEEcchHHHh
Confidence 357888999998 9999999997654 33443 46777775 799999999999999999 999999999999999
Q ss_pred ChHHHHHHHHcC-CCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEee-eCCHHHH
Q 048725 535 NVQELATIKVEK-LPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQ-VTRKADL 612 (661)
Q Consensus 535 ~~~eL~ta~~~~-lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~-v~~~~el 612 (661)
+++||+|+++++ +|+++||+||++|+++.. | . .. .. ..+||+++|++||+++.+ |++++||
T Consensus 74 ~~~el~ta~~~~~~pv~~vV~NN~~yg~~~~-q------~---~~-~~------~~~d~~~lA~a~G~~~~~~v~~~~~l 136 (181)
T TIGR03846 74 NLGVLPTIAAESPKNLILVILDNGAYGSTGN-Q------P---TP-AS------RRTDLELVAKAAGIRNVEKVADEEEL 136 (181)
T ss_pred hhhHHHHHHHhCCCCeEEEEEeCCccccccC-c------C---CC-CC------CCCCHHHHHHHCCCCeEEEeCCHHHH
Confidence 999999999999 599999999999999741 1 0 00 00 127999999999999999 9999999
Q ss_pred HHHHHHHHhCCCcEEEEEEeCCCCCcCCcCC
Q 048725 613 RAAIQTMLDTPGPYLLDVIFPHQEHVLPMIP 643 (661)
Q Consensus 613 ~~al~~a~~~~gp~lIeV~~~~~~~~~p~~~ 643 (661)
+++|+ +++.++|+||||.+++++...|+++
T Consensus 137 ~~al~-a~~~~~p~li~v~~~~~~~~~p~~~ 166 (181)
T TIGR03846 137 RDALK-ALAMKGPTFIHVKVKPGNAKVPNIP 166 (181)
T ss_pred HHHHH-HHcCCCCEEEEEEeCCCCCCCCCCC
Confidence 99997 8888999999999998887767665
No 83
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.96 E-value=4.1e-29 Score=236.30 Aligned_cols=154 Identities=32% Similarity=0.459 Sum_probs=146.1
Q ss_pred HHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHH
Q 048725 92 DILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSGLA 171 (661)
Q Consensus 92 d~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~gl~ 171 (661)
++|++.|+++||+++||+||+...++++++.+.++++++.++||++|++||+||+|.++ +++|++++|||++|+++++.
T Consensus 1 ~~~~~~l~~~gv~~vfg~pg~~~~~l~~~~~~~~~~~~~~~~~E~~a~~~A~G~a~~~~-~~v~~~~~gpg~~~~~~~l~ 79 (154)
T cd06586 1 AAFAEVLTAWGVRHVFGYPGDEISSLLDALREGDKRIIDTVIHELGAAGAAAGYARAGG-PPVVIVTSGTGLLNAINGLA 79 (154)
T ss_pred ChHHHHHHHcCCCEEEEcCCcchHHHHHHHhccCCceEEeeCCHHHHHHHHHHHHHhhC-CEEEEEcCCCcHHHHHHHHH
Confidence 47999999999999999999999999999987768999999999999999999999999 99999999999999999999
Q ss_pred HhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 048725 172 DALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPK 247 (661)
Q Consensus 172 ~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~ 247 (661)
+|+.+++|||+|+++++....+.+.+|+.++..++++++||...+.++++..+.+.+|++.+.++ +|||+|++|.
T Consensus 80 ~a~~~~~Pvl~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~-~gPv~l~ip~ 154 (154)
T cd06586 80 DAAAEHLPVVFLIGARGISAQAKQTFQSMFDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYAS-QGPVVVRLPR 154 (154)
T ss_pred HHHhcCCCEEEEeCCCChhhhccCcccccCHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhcC-CCCEEEEccC
Confidence 99999999999999998776667789999999999999999999999999999999999999988 7999999984
No 84
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.96 E-value=1.7e-29 Score=244.74 Aligned_cols=171 Identities=20% Similarity=0.267 Sum_probs=142.1
Q ss_pred cCCCCCCCChHHHHHHHhhhcCCCcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEE
Q 048725 446 FKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVD 525 (661)
Q Consensus 446 ~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~ 525 (661)
.+..|.+++...++..|++.++++.||+.|+|++.+|..+ +.+++. ++|+||+++|+|+|+++++|+++||+
T Consensus 3 ~~~~c~gc~~~~~~~~l~~~l~~~~iv~~D~G~~~~~~~~------~~~~~~--~~g~mG~gl~~AiGa~la~p~~~Vv~ 74 (178)
T cd02008 3 PPGLCPGCPHRPSFYALRKAFKKDSIVSGDIGCYTLGALP------PLNAID--TCTCMGASIGVAIGMAKASEDKKVVA 74 (178)
T ss_pred CCCcCCCCCChHHHHHHHHHhcCCeEEecCcCcccccccC------Chhhcc--ccccCccHHHHHhhHHhhCCCCCEEE
Confidence 3456888999999999999999999999999998888742 233332 57999999999999999999999999
Q ss_pred EECCcccccC-hHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEe
Q 048725 526 IDGDGSFIMN-VQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGA 604 (661)
Q Consensus 526 i~GDGsf~~~-~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~ 604 (661)
++|||+|+|+ ++||+|++++++|+++||+||++|+++++++.. . .. ..... ....+||.++|++||+++.
T Consensus 75 i~GDG~f~~~g~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~-~-~~---~~~~~----~~~~~d~~~~a~a~G~~~~ 145 (178)
T cd02008 75 VIGDSTFFHSGILGLINAVYNKANITVVILDNRTTAMTGGQPHP-G-TG---KTLTE----PTTVIDIEALVRAIGVKRV 145 (178)
T ss_pred EecChHHhhccHHHHHHHHHcCCCEEEEEECCcceeccCCCCCC-C-Cc---ccccC----CCCccCHHHHHHHCCCCEE
Confidence 9999999998 799999999999999999999999998643211 1 00 00000 1113799999999999999
Q ss_pred eeCCHHHHH---HHHHHHHhCCCcEEEEEEeC
Q 048725 605 QVTRKADLR---AAIQTMLDTPGPYLLDVIFP 633 (661)
Q Consensus 605 ~v~~~~el~---~al~~a~~~~gp~lIeV~~~ 633 (661)
+|++.+||+ ++|+++++.+||.||+|..+
T Consensus 146 ~v~~~~~l~~~~~al~~a~~~~gp~lI~v~~~ 177 (178)
T cd02008 146 VVVDPYDLKAIREELKEALAVPGVSVIIAKRP 177 (178)
T ss_pred EecCccCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 999888887 88999999999999999764
No 85
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.96 E-value=2.3e-28 Score=234.66 Aligned_cols=167 Identities=39% Similarity=0.624 Sum_probs=148.3
Q ss_pred HHHHHhhhcCCCcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChH
Q 048725 458 AIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQ 537 (661)
Q Consensus 458 ~~~~l~~~l~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~ 537 (661)
+++.|.+.++++.+++.|+|++..|..+++....+..+..+.++|+||+++|+|+|++++.|+++||+++|||+|+|+++
T Consensus 2 ~~~~l~~~~~~~~~i~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~~a~Gaa~a~~~~~vv~~~GDG~~~~~~~ 81 (168)
T cd00568 2 VLAALRAALPEDAIVVNDAGNSAYWAYRYLPLRRGRRFLTSTGFGAMGYGLPAAIGAALAAPDRPVVCIAGDGGFMMTGQ 81 (168)
T ss_pred HHHHHHHHCCCCCEEEeCCcHHHHHHHHheeeCCCCcEEeCCCchhhhhhHHHHHHHHHhCCCCcEEEEEcCcHHhccHH
Confidence 56778888999999999999999999999888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHH
Q 048725 538 ELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQ 617 (661)
Q Consensus 538 eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~ 617 (661)
||+|++++++|+++||+||++|+++...+...++...... ....+||.+++++||+++.+|++++|++++++
T Consensus 82 ~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~~~--------~~~~~d~~~~a~~~G~~~~~v~~~~~l~~a~~ 153 (168)
T cd00568 82 ELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGT--------DLSNPDFAALAEAYGAKGVRVEDPEDLEAALA 153 (168)
T ss_pred HHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcCCCcccc--------cCCCCCHHHHHHHCCCeEEEECCHHHHHHHHH
Confidence 9999999999999999999999999877655442211111 11237999999999999999999999999999
Q ss_pred HHHhCCCcEEEEEEe
Q 048725 618 TMLDTPGPYLLDVIF 632 (661)
Q Consensus 618 ~a~~~~gp~lIeV~~ 632 (661)
++++.+||+||||++
T Consensus 154 ~a~~~~~p~~i~v~~ 168 (168)
T cd00568 154 EALAAGGPALIEVKT 168 (168)
T ss_pred HHHhCCCCEEEEEEC
Confidence 999999999999975
No 86
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.96 E-value=1.1e-28 Score=241.66 Aligned_cols=176 Identities=19% Similarity=0.244 Sum_probs=134.7
Q ss_pred CCCChHHHHHHHhhh------cCCCcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEE
Q 048725 451 ESIPPQYAIQVLDEL------TNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIV 524 (661)
Q Consensus 451 ~~i~~~~~~~~l~~~------l~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv 524 (661)
.++.+..+++.+.+. .++|.++++|+|++ .|..++++. +..+|+||+++|+|+|+++++|+++||
T Consensus 3 ~gc~~~~~~~~~~~~~~~~~~~~~d~ii~~D~G~~-~~~~~~~~~--------~~~~g~mG~glpaAiGa~la~p~r~Vv 73 (193)
T cd03375 3 PGCGDGSILKALAKALAELGIDPEKVVVVSGIGCS-SRLPYYFNT--------YGFHTLHGRALAVATGVKLANPDLTVI 73 (193)
T ss_pred CCCCcHHHHHHHHHHHHHhCCCCCCEEEEeCCChh-ceehhhccc--------cchhhhhccHHHHHHHHHHhCCCCeEE
Confidence 344444444444433 36689999999986 466666542 223489999999999999999999999
Q ss_pred EEECCcc-cccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHh-hcccccccccCCCCCcccCCccHHHHHhHcCCC
Q 048725 525 DIDGDGS-FIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRF-YKANRAHTYLGDPSRESEIFPNMLKFAEACGIP 602 (661)
Q Consensus 525 ~i~GDGs-f~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~-~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~ 602 (661)
+++|||+ |+|+++||+|++++++|+++||+||++|+++++++... +....... .+.......+||.++|++||++
T Consensus 74 ~i~GDGs~f~m~~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~~iA~a~G~~ 150 (193)
T cd03375 74 VVSGDGDLAAIGGNHFIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEGFKTKT---TPYGNIEEPFNPLALALAAGAT 150 (193)
T ss_pred EEeccchHhhccHHHHHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCCCcccC---CCCCCCCCCCCHHHHHHHCCCC
Confidence 9999999 57999999999999999999999999999987554321 11110111 1111111237999999999999
Q ss_pred Ee---eeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCCCc
Q 048725 603 GA---QVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHV 638 (661)
Q Consensus 603 ~~---~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~~~ 638 (661)
+. +|++++||+++|+++++.++|+||||+++...++
T Consensus 151 ~~~~~~v~~~~el~~al~~al~~~gp~vIev~~~C~~~~ 189 (193)
T cd03375 151 FVARGFSGDIKQLKEIIKKAIQHKGFSFVEVLSPCPTFP 189 (193)
T ss_pred EEEEEecCCHHHHHHHHHHHHhcCCCEEEEEECCCCCCC
Confidence 95 7999999999999999999999999999876543
No 87
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.96 E-value=6e-28 Score=235.17 Aligned_cols=157 Identities=27% Similarity=0.397 Sum_probs=134.4
Q ss_pred HHHHHHhhhcCCCcEEEEcCChhHHHHHhhcccc------CCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCc
Q 048725 457 YAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYR------RPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDG 530 (661)
Q Consensus 457 ~~~~~l~~~l~~d~iv~~d~G~~~~~~~~~~~~~------~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG 530 (661)
.+++.|.+.+++|.+++.|.|.+. .+++++. .|.+|+++ |+||+++|+|+|++++.|+++||+++|||
T Consensus 3 ~~~~~l~~~l~~d~ivv~d~G~~~---~~~~~~~~~~~~~~~~~~~~~---g~mG~~lpaAiGaala~p~~~Vv~i~GDG 76 (188)
T cd03371 3 DAIEIVLSRAPATAAVVSTTGMTS---RELFELRDRPGGGHAQDFLTV---GSMGHASQIALGIALARPDRKVVCIDGDG 76 (188)
T ss_pred HHHHHHHhhcCCCCEEEECCCcch---HHHHHhhcCCCCCccCceeec---CccccHHHHHHHHHHhCCCCcEEEEeCCc
Confidence 578899999999999999999654 3555554 33677764 89999999999999999999999999999
Q ss_pred ccccChHHHHHHHHcCC-CeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCE-eeeCC
Q 048725 531 SFIMNVQELATIKVEKL-PIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPG-AQVTR 608 (661)
Q Consensus 531 sf~~~~~eL~ta~~~~l-pv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~-~~v~~ 608 (661)
+|+|+++||+|++++++ |+++||+||++|+++.. . .... ..+||.++|++||+++ .+|++
T Consensus 77 ~f~m~~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~--------~---~~~~-------~~~d~~~~A~a~G~~~~~~v~~ 138 (188)
T cd03371 77 AALMHMGGLATIGGLAPANLIHIVLNNGAHDSVGG--------Q---PTVS-------FDVSLPAIAKACGYRAVYEVPS 138 (188)
T ss_pred HHHhhccHHHHHHHcCCCCcEEEEEeCchhhccCC--------c---CCCC-------CCCCHHHHHHHcCCceEEecCC
Confidence 99999999999999997 69999999999998621 0 0011 1279999999999998 58999
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEeCCCCC
Q 048725 609 KADLRAAIQTMLDTPGPYLLDVIFPHQEH 637 (661)
Q Consensus 609 ~~el~~al~~a~~~~gp~lIeV~~~~~~~ 637 (661)
.+||+++|+++++.++|+||||.+++.+.
T Consensus 139 ~~el~~al~~a~~~~~p~lIev~~~~~~~ 167 (188)
T cd03371 139 LEELVAALAKALAADGPAFIEVKVRPGSR 167 (188)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEecCCCC
Confidence 99999999999999999999999998775
No 88
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.96 E-value=2.8e-28 Score=245.78 Aligned_cols=187 Identities=16% Similarity=0.164 Sum_probs=152.4
Q ss_pred CCCCCCCChHHHHHHHhhhcC--CCcEEEEcCChhHHHHHhhccccCCCeEEecC--CCCcccchHHHHHHhhhh-----
Q 048725 447 KTFEESIPPQYAIQVLDELTN--GEAIISTGVGQHQMWAAQFYKYRRPRQWLTSG--GLGAMGFGLPAAIGAAVA----- 517 (661)
Q Consensus 447 ~~~~~~i~~~~~~~~l~~~l~--~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~--~~g~mG~~lpaAiGaala----- 517 (661)
...|.++.+..+++.|.+.++ ++.|++.|+|++.+|..++.....+.++..+. +.|+||+|+|+|||++++
T Consensus 5 ~~~c~gc~~~~~~~~l~~~l~~p~d~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~ 84 (237)
T cd02018 5 HGACAGCGEVTAVRVVLAALPAPEDTVIANSTGCSSVYASTAPFNSWAVPWVNSLFEDANAVASGLKRGLKARFPKDREL 84 (237)
T ss_pred CccCcCCCcHHHHHHHHHHhCCCCCEEEEeCCCccceecccCcCcccCCCeeeccccCHHHHHHHHHHHHHhhccccccc
Confidence 345778889999999999999 99999999999999998875544556666653 559999999999999999
Q ss_pred CCCCcEEEEECCcccc-cChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHh--hcccccccccCCCCCcccCCccHHH
Q 048725 518 NPDAIIVDIDGDGSFI-MNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRF--YKANRAHTYLGDPSRESEIFPNMLK 594 (661)
Q Consensus 518 ~p~~~vv~i~GDGsf~-~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~--~~~~~~~~~~g~p~~~~~~~~d~~~ 594 (661)
.|+++||+++|||+|+ |++++|+|++++++|+++||+||++||++.. |+.. +.. ......+.......+||++
T Consensus 85 ~p~~~Vv~i~GDG~~~~~g~~~l~ta~~~~l~i~ivVlNN~~yg~~~~-q~~~~~~~g---~~~~~~~~~~~~~~~D~~~ 160 (237)
T cd02018 85 DKKKDVVVIGGDGATYDIGFGALSHSLFRGEDITVIVLDNEVYSNTGG-QRSGATPLG---ADSKMAPAGKKEDKKDLVL 160 (237)
T ss_pred CCCCcEEEEeCchHHHhccHHHHHHHHHcCCCeEEEEECCccccCCCC-CCCCCCcCC---CcccccCCCCcCCCCCHHH
Confidence 9999999999999998 7999999999999999999999999998742 2111 000 0000011111222389999
Q ss_pred HHhHcCCCEee---eCCHHHHHHHHHHHHh-CCCcEEEEEEeCCCCC
Q 048725 595 FAEACGIPGAQ---VTRKADLRAAIQTMLD-TPGPYLLDVIFPHQEH 637 (661)
Q Consensus 595 ~A~a~G~~~~~---v~~~~el~~al~~a~~-~~gp~lIeV~~~~~~~ 637 (661)
+|++||+++++ |++++||+++|+++++ .+||+||||.++..++
T Consensus 161 iA~a~G~~~~~~~~v~~~~~l~~al~~al~~~~GP~lI~v~i~c~~~ 207 (237)
T cd02018 161 IAATHGCVYVARLSPALKKHFLKVVKEAISRTDGPTFIHAYTPCITE 207 (237)
T ss_pred HHHHCCCCEEEEEccCCHHHHHHHHHHHHhcCCCCEEEEEeCCCCCC
Confidence 99999999986 9999999999999998 9999999999987653
No 89
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.95 E-value=1.6e-28 Score=247.04 Aligned_cols=185 Identities=15% Similarity=0.141 Sum_probs=146.6
Q ss_pred CCCCCCChHHHHHHHhhhcCCCcEEEEcCChhHHHHH----hhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcE
Q 048725 448 TFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAA----QFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAII 523 (661)
Q Consensus 448 ~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~~~~----~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~v 523 (661)
..|.++.+..++..|++.+++|.+++.|+|++.+|.. ++++...+..++.+. ++||+|+|+|+|+++++|+++|
T Consensus 6 ~~C~gC~~~~~~~~l~~~lp~d~iiv~D~G~~~~~~~~~~~~~~~~~~~~~~~~~~--gsmG~GlpaAiGa~~a~p~r~V 83 (235)
T cd03376 6 RACAGCGAALALRHVLKALGPDTVVVNPTGCLEVITTPYPYTAWRVPWIHVAFENA--AAVASGIEAALKALGRGKDITV 83 (235)
T ss_pred ccCCCCccHHHHHHHHHHhhcCeEEEeCCCcccccCCcCCCccccccceehhhcCH--HHHHHHHHHHHHHhccCCCCeE
Confidence 3577899999999999999999999999999977543 334555555655443 7999999999999999999999
Q ss_pred EEEECCccc-ccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCC-----cccCCccHHHHHh
Q 048725 524 VDIDGDGSF-IMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSR-----ESEIFPNMLKFAE 597 (661)
Q Consensus 524 v~i~GDGsf-~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~-----~~~~~~d~~~~A~ 597 (661)
|+++|||+| +|+++||+|++++++|+++||+||++||++.. |...... .......++.. .....+||.++|+
T Consensus 84 V~i~GDG~~~~m~~~eL~ta~~~~~pv~~vVlNN~~yg~tg~-q~~~~~~-~~~~~~~~~~g~~~~~~~~~~~d~~~iA~ 161 (235)
T cd03376 84 VAFAGDGGTADIGFQALSGAAERGHDILYICYDNEAYMNTGI-QRSGSTP-YGAWTTTTPVGKVSFGKKQPKKDLPLIMA 161 (235)
T ss_pred EEEEcCchHHhhHHHHHHHHHHcCCCeEEEEECCcccccCCC-CCCCCCC-CCCEeecCCCCccccccccccCCHHHHHH
Confidence 999999995 89999999999999999999999999998632 2211100 00000000100 0112379999999
Q ss_pred HcCCCEe---eeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCC
Q 048725 598 ACGIPGA---QVTRKADLRAAIQTMLDTPGPYLLDVIFPHQE 636 (661)
Q Consensus 598 a~G~~~~---~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~ 636 (661)
+||++++ ++++++||+++|+++++.+||+||||.++...
T Consensus 162 a~G~~~~~~~~v~~~~el~~al~~a~~~~gP~lIev~~~C~~ 203 (235)
T cd03376 162 AHNIPYVATASVAYPEDLYKKVKKALSIEGPAYIHILSPCPT 203 (235)
T ss_pred HcCCcEEEEEcCCCHHHHHHHHHHHHhCCCCEEEEEECCCCC
Confidence 9999986 59999999999999999999999999998765
No 90
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.95 E-value=1.6e-27 Score=230.61 Aligned_cols=162 Identities=28% Similarity=0.432 Sum_probs=135.5
Q ss_pred HHHHHHHhhhcCCCcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccC
Q 048725 456 QYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMN 535 (661)
Q Consensus 456 ~~~~~~l~~~l~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~ 535 (661)
+.+++.|++.++ |.++++|+|++..|...+. ..+.+++. +|+||+++|+|+|++++.| ++||+++|||+|+|+
T Consensus 2 ~~~~~~l~~~~~-~~~vv~d~G~~~~~~~~~~--~~~~~~~~---~g~mG~~lp~AiGaala~~-~~vv~i~GDG~f~m~ 74 (179)
T cd03372 2 RDAIKTLIADLK-DELVVSNIGFPSKELYAAG--DRPLNFYM---LGSMGLASSIGLGLALAQP-RKVIVIDGDGSLLMN 74 (179)
T ss_pred HHHHHHHHHhCC-CCeEEeCCCHhHHHHHHcc--Cccccccc---ccchhhHHHHHHHHHhcCC-CcEEEEECCcHHHhC
Confidence 357889999999 9999999998866644331 34566663 7999999999999999998 899999999999999
Q ss_pred hHHHHHHHHcCC-CeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeC-CHHHHH
Q 048725 536 VQELATIKVEKL-PIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVT-RKADLR 613 (661)
Q Consensus 536 ~~eL~ta~~~~l-pv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~-~~~el~ 613 (661)
++||+|++++++ |+++||+||++|+++.. + . . ... ..+||.++|++||+++.+++ +.+||+
T Consensus 75 ~~el~ta~~~~~~~l~vvV~NN~~~~~~~~-~------~---~--~~~-----~~~d~~~lA~a~G~~~~~v~~~~~el~ 137 (179)
T cd03372 75 LGALATIAAEKPKNLIIVVLDNGAYGSTGN-Q------P---T--HAG-----KKTDLEAVAKACGLDNVATVASEEAFE 137 (179)
T ss_pred HHHHHHHHHcCCCCEEEEEEcCccccccCC-C------C---C--CCC-----CCCCHHHHHHHcCCCeEEecCCHHHHH
Confidence 999999999995 79999999999998621 1 0 0 011 12799999999999999999 999999
Q ss_pred HHHHHHHhCCCcEEEEEEeCCCCCcCCcCC
Q 048725 614 AAIQTMLDTPGPYLLDVIFPHQEHVLPMIP 643 (661)
Q Consensus 614 ~al~~a~~~~gp~lIeV~~~~~~~~~p~~~ 643 (661)
++|++++ +||.||||.+++.+...|..+
T Consensus 138 ~al~~a~--~gp~lIev~~~~~~~~~~~~~ 165 (179)
T cd03372 138 KAVEQAL--DGPSFIHVKIKPGNTDVPNIP 165 (179)
T ss_pred HHHHHhc--CCCEEEEEEEcCCCCCCCCCC
Confidence 9999998 799999999998886556444
No 91
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.94 E-value=8.4e-27 Score=238.38 Aligned_cols=174 Identities=16% Similarity=0.184 Sum_probs=136.7
Q ss_pred CCChHHHHHHHhhh--cCCCcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECC
Q 048725 452 SIPPQYAIQVLDEL--TNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGD 529 (661)
Q Consensus 452 ~i~~~~~~~~l~~~--l~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GD 529 (661)
.+.++.+++.|+++ .++++++++|+|++..+.. + ..+..++ ++||+++|+|+|+++|+|+++||+++||
T Consensus 25 ~i~~~~v~~al~e~~~~~~d~ivvsdiGc~~~~~~-~---~~~~~~~-----~~~G~alPaAiGaklA~Pdr~VV~i~GD 95 (277)
T PRK09628 25 GVILKSIIRAIDKLGWNMDDVCVVSGIGCSGRFSS-Y---VNCNTVH-----TTHGRAVAYATGIKLANPDKHVIVVSGD 95 (277)
T ss_pred chHHHHHHHHHHHhcCCCCCEEEEeCcCHHHHhhc-c---CCCCcee-----eccccHHHHHHHHHHHCCCCeEEEEECc
Confidence 35678899999988 5889999999998754432 2 2333333 5899999999999999999999999999
Q ss_pred ccccc-ChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEe---e
Q 048725 530 GSFIM-NVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGA---Q 605 (661)
Q Consensus 530 Gsf~~-~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~---~ 605 (661)
|+|+| +.+|+.|++++|+|+++||+||+.|||++.++...+... ......+.......+||.++|++||++++ +
T Consensus 96 G~f~~~g~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g--~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~ 173 (277)
T PRK09628 96 GDGLAIGGNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKG--MWTVTAQYGNIDPTFDACKLATAAGASFVARES 173 (277)
T ss_pred hHHHHhhHHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCC--ceeeeccCCCcCCCCCHHHHHHHCCCceEEEEc
Confidence 99975 789999999999999999999999999864332211100 00011111111223699999999999984 8
Q ss_pred eCCHHHHHHHHHHHHhCCCcEEEEEEeCCCC
Q 048725 606 VTRKADLRAAIQTMLDTPGPYLLDVIFPHQE 636 (661)
Q Consensus 606 v~~~~el~~al~~a~~~~gp~lIeV~~~~~~ 636 (661)
|++++||+++|++|++.+||+||||+++...
T Consensus 174 v~~~~el~~al~~Al~~~Gp~lIeV~~~c~~ 204 (277)
T PRK09628 174 VIDPQKLEKLLVKGFSHKGFSFFDVFSNCHI 204 (277)
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEEcCCCCC
Confidence 9999999999999999999999999999874
No 92
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.94 E-value=9.5e-27 Score=219.32 Aligned_cols=147 Identities=18% Similarity=0.254 Sum_probs=125.1
Q ss_pred HHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEE-ccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHH
Q 048725 92 DILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNV-LPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSGL 170 (661)
Q Consensus 92 d~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v-~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~gl 170 (661)
|+|++.|+++||+++||+||+.+++|+++|.. +|++| .++||++|++||++| |++|+++||+.++|+| |++++|
T Consensus 2 ~~~v~~L~~~Gv~~vfGvPg~~~~~l~dal~~--~i~~i~~~~ee~aa~~aAg~~-~~~~~~~v~~~~sG~g--n~~~~l 76 (157)
T TIGR03845 2 EAVYNILKDAGIDLVASVPCDNLKNLLPLIEK--DFRHIPLTREEEGVGICAGAY-LAGKKPAILMQSSGLG--NSINAL 76 (157)
T ss_pred hHHHHHHHHCCCeEEEecCcHhHHHHHHHHHh--CCcEEecCChHHHHHHHHHHH-HhcCCcEEEEeCCcHH--HHHHHH
Confidence 68999999999999999999999999999953 39999 888888899999888 9999999999988876 999999
Q ss_pred HHhh-hCCCcEEEEecCCCC------cccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEE
Q 048725 171 ADAL-LDSVPLVAITGQVPR------RMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLI 243 (661)
Q Consensus 171 ~~A~-~~~iPll~ItG~~p~------~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I 243 (661)
++|+ .+++|||+|+|++.. .+.+.+.+++. .+..+--++..+.+++++ ..+++|++.|.+++ |||+|
T Consensus 77 ~~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~g~~~~~----~l~~~~i~~~~i~~~e~~-~~i~~A~~~a~~~~-gPv~i 150 (157)
T TIGR03845 77 ASLNKTYGIPLPILASWRGVYKEKIPAQIPMGRATPK----LLDTLGIPYTIPREPEEA-KLIEKAISDAYENS-RPVAA 150 (157)
T ss_pred HHHHHcCCCCEEEEEeccCCCCCCCccccchhhhhHH----HHHHcCCCeEEeCCHHHH-HHHHHHHHHHHhCC-CCEEE
Confidence 9999 999999999998887 44444444332 112222257788899999 99999999999999 99999
Q ss_pred Eeccch
Q 048725 244 DVPKDI 249 (661)
Q Consensus 244 ~iP~dv 249 (661)
-++.++
T Consensus 151 l~~~~~ 156 (157)
T TIGR03845 151 LLDPKY 156 (157)
T ss_pred EEeCCc
Confidence 998765
No 93
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.94 E-value=2.6e-26 Score=236.33 Aligned_cols=176 Identities=18% Similarity=0.228 Sum_probs=142.0
Q ss_pred CCCCCCCChHHHHHHHhhhc------CCCcEEEEcCChhHHHHHhhccccCCCeEEecCCC-CcccchHHHHHHhhhhCC
Q 048725 447 KTFEESIPPQYAIQVLDELT------NGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGL-GAMGFGLPAAIGAAVANP 519 (661)
Q Consensus 447 ~~~~~~i~~~~~~~~l~~~l------~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~-g~mG~~lpaAiGaala~p 519 (661)
+..|.++....+++.|.+.+ +++.++++|+|++..|. .|+.+.++ |+||+++|+|+|+++|+|
T Consensus 17 ~~~CpGCg~~~il~~l~~al~~l~~~p~d~vvvsdiGc~~~~~----------~~~~~~~~~g~mG~alpaAiGaklA~P 86 (286)
T PRK11867 17 PRWCPGCGDGSILAALQRALAELGLDPENVAVVSGIGCSGRLP----------GYINTYGFHTIHGRALAIATGLKLANP 86 (286)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHhCCCCCcEEEEeCCccccccC----------ccccccchhhhhhcHHHHHHHHHHhCC
Confidence 34688888888999999888 78999999999876542 24445555 899999999999999999
Q ss_pred CCcEEEEECCcc-cccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHH--hhcccccccccCCCCCcccCCccHHHHH
Q 048725 520 DAIIVDIDGDGS-FIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDR--FYKANRAHTYLGDPSRESEIFPNMLKFA 596 (661)
Q Consensus 520 ~~~vv~i~GDGs-f~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~--~~~~~~~~~~~g~p~~~~~~~~d~~~~A 596 (661)
+++||+++|||+ |+|+++||+|++|+|+|+++||+||++|||++.++.. .++.......++++ ...+|+.++|
T Consensus 87 d~~VV~i~GDG~~f~mg~~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~----~~~~d~~~lA 162 (286)
T PRK11867 87 DLTVIVVTGDGDALAIGGNHFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSI----EPPFNPVELA 162 (286)
T ss_pred CCcEEEEeCccHHHhCCHHHHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCC----CCCCCHHHHH
Confidence 999999999995 9999999999999999999999999999998753211 11110001112221 1237999999
Q ss_pred hHcCCCEee---eCCHHHHHHHHHHHHhCCCcEEEEEEeCCCC
Q 048725 597 EACGIPGAQ---VTRKADLRAAIQTMLDTPGPYLLDVIFPHQE 636 (661)
Q Consensus 597 ~a~G~~~~~---v~~~~el~~al~~a~~~~gp~lIeV~~~~~~ 636 (661)
+++|+.++. +.+++||+++|+++++.+||+||||.++...
T Consensus 163 ~a~Ga~~va~~~~~~~~el~~al~~Al~~~Gp~lIev~~~C~~ 205 (286)
T PRK11867 163 LGAGATFVARGFDSDVKQLTELIKAAINHKGFSFVEILQPCPT 205 (286)
T ss_pred HHCCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCC
Confidence 999999873 6789999999999999999999999998654
No 94
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.93 E-value=9e-26 Score=230.46 Aligned_cols=177 Identities=20% Similarity=0.235 Sum_probs=143.1
Q ss_pred CCCCCCCChHHHHHHHhhhc------CCCcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCC
Q 048725 447 KTFEESIPPQYAIQVLDELT------NGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPD 520 (661)
Q Consensus 447 ~~~~~~i~~~~~~~~l~~~l------~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~ 520 (661)
+..|.++.+..++..|++.+ +++.++++|+|++. |...++... ...++||+++|+|+|+++|+|+
T Consensus 7 ~~~CpGCg~~~il~al~~al~~l~~~~~~~ivvsdiGc~~-~~~~~~~~~--------~~~~~~G~alp~A~GaklA~Pd 77 (279)
T PRK11866 7 PIWCPGCGNYGILEALRKALAELGIPPENVVVVSGIGCSS-NLPEFLNTY--------GIHGIHGRVLPIATGVKWANPK 77 (279)
T ss_pred CCCCCCCCChHHHHHHHHHHHHhcCCCCCEEEEECCchhh-hhhhhccCC--------CcccccccHHHHHHHHHHHCCC
Confidence 45688888888888888777 67899999999987 666665432 2358999999999999999999
Q ss_pred CcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhc--ccccccccCCCCCcccCCccHHHHHh
Q 048725 521 AIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYK--ANRAHTYLGDPSRESEIFPNMLKFAE 597 (661)
Q Consensus 521 ~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~--~~~~~~~~g~p~~~~~~~~d~~~~A~ 597 (661)
++||+++||| +|+|+++||.||+++|+|+++||+||+.|||++.++...+. .....+..|++. ...|+.++|+
T Consensus 78 ~~VV~i~GDG~~f~ig~~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~----~~~d~~~iA~ 153 (279)
T PRK11866 78 LTVIGYGGDGDGYGIGLGHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIE----EPFNPIALAL 153 (279)
T ss_pred CcEEEEECChHHHHccHHHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCC----CCCCHHHHHH
Confidence 9999999999 79999999999999999999999999999999744322211 111112223321 1259999999
Q ss_pred HcCCCEeee---CCHHHHHHHHHHHHhCCCcEEEEEEeCCCC
Q 048725 598 ACGIPGAQV---TRKADLRAAIQTMLDTPGPYLLDVIFPHQE 636 (661)
Q Consensus 598 a~G~~~~~v---~~~~el~~al~~a~~~~gp~lIeV~~~~~~ 636 (661)
++|+.++.. .++++|+++|++|++.+||+||||..+...
T Consensus 154 a~G~~~Va~~~~~~~~~l~~~l~~Al~~~Gps~I~v~~pC~~ 195 (279)
T PRK11866 154 AAGATFVARGFSGDVKHLKEIIKEAIKHKGFSFIDVLSPCVT 195 (279)
T ss_pred HCCCCEEEEEcCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCC
Confidence 999988765 889999999999999999999999997644
No 95
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.93 E-value=1.1e-25 Score=232.52 Aligned_cols=169 Identities=20% Similarity=0.253 Sum_probs=132.8
Q ss_pred hHHHHHHHhhh--cCCCcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCccc
Q 048725 455 PQYAIQVLDEL--TNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSF 532 (661)
Q Consensus 455 ~~~~~~~l~~~--l~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf 532 (661)
.+.+++.++++ .+++.++++|+|++. |...++. .....|+||+++|+|+|+++|+|+++||+++|||+|
T Consensus 30 ~~~i~~al~~l~l~p~d~vivsdiG~s~-~~~~yl~--------~~~~~g~mG~alpaAiGaklA~pd~~VV~i~GDG~~ 100 (301)
T PRK05778 30 LNAIIQALAELGLDPDKVVVVSGIGCSS-KIPGYFL--------SHGLHTLHGRAIAFATGAKLANPDLEVIVVGGDGDL 100 (301)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCcHhh-hhhhhcc--------cCccchhhccHHHHHHHHHHHCCCCcEEEEeCccHH
Confidence 45566777776 478999999999865 4333432 222338999999999999999999999999999998
Q ss_pred -ccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHh--hcccccccccCCCCCcccCCccHHHHHhHcCCCEe---ee
Q 048725 533 -IMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRF--YKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGA---QV 606 (661)
Q Consensus 533 -~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~--~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~---~v 606 (661)
+|+++||+||+|+|+|+++||+||++||+++.++... ++.. .. ..|.......+||.++|+++|+.++ ++
T Consensus 101 ~~mg~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~-~~---~~~~g~~~~~~d~~~lA~a~G~~~va~~~v 176 (301)
T PRK05778 101 ASIGGGHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEGSK-TK---TAPYGNIEPPIDPCALALAAGATFVARSFA 176 (301)
T ss_pred HhccHHHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCCcc-cc---cccCCCcCCCCCHHHHHHHCCCCEEEEecc
Confidence 4899999999999999999999999999997533211 1110 00 1111111123799999999999987 79
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEEeCCCC
Q 048725 607 TRKADLRAAIQTMLDTPGPYLLDVIFPHQE 636 (661)
Q Consensus 607 ~~~~el~~al~~a~~~~gp~lIeV~~~~~~ 636 (661)
.+++||+++|++|++.+||+||||.++...
T Consensus 177 ~~~~eL~~ai~~A~~~~GpalIeV~~~C~~ 206 (301)
T PRK05778 177 GDVKQLVELIKKAISHKGFAFIDVLSPCVT 206 (301)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEEcCCCCC
Confidence 999999999999999999999999998544
No 96
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.93 E-value=2.3e-25 Score=227.25 Aligned_cols=178 Identities=17% Similarity=0.178 Sum_probs=136.7
Q ss_pred CCCCCCChHHHHHHHhhh------cCCCcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCC
Q 048725 448 TFEESIPPQYAIQVLDEL------TNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDA 521 (661)
Q Consensus 448 ~~~~~i~~~~~~~~l~~~------l~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~ 521 (661)
..|.++....++..+.+. +++|.++++|+|++..| .+++.. .+..+.||+++|+|+|+++|+|++
T Consensus 9 ~~CpGCg~~~i~~~~~~a~~~l~~~p~d~ivvsdiG~~~~~-~~~~~~--------~~~~~~mG~alp~AiGaklA~pd~ 79 (280)
T PRK11869 9 AWCPGCGNFGIRNALMKALSELNLKPRQVVIVSGIGQAAKM-PHYINV--------NGFHTLHGRAIPAATAVKATNPEL 79 (280)
T ss_pred CCCcCCCCHHHHHHHHHHHHHcCCCCCCEEEEeCchHhhhH-HHHccC--------CCCCcccccHHHHHHHHHHHCCCC
Confidence 356777777666555543 46789999999998775 344322 134477999999999999999999
Q ss_pred cEEEEECCcccccC-hHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcC
Q 048725 522 IIVDIDGDGSFIMN-VQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACG 600 (661)
Q Consensus 522 ~vv~i~GDGsf~~~-~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G 600 (661)
+||+++|||+|+|. +|||+||+|+|+|+++||+||++||+++.++.... .........|.......+||.++|+++|
T Consensus 80 ~VVai~GDG~~~~iG~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t--~~g~~~~~~p~g~~~~~~D~~~lA~a~G 157 (280)
T PRK11869 80 TVIAEGGDGDMYAEGGNHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTT--LKGFKTPTQPWGVFEEPFNPIALAIALD 157 (280)
T ss_pred cEEEEECchHHhhCcHHHHHHHHHhCcCcEEEEEECHHHhhhcceecCCC--CCCcccccCCCCccCCCCCHHHHHHHCC
Confidence 99999999999976 99999999999999999999999999864331100 0000000111111122379999999999
Q ss_pred CCEee---eCCHHHHHHHHHHHHhCCCcEEEEEEeCCCC
Q 048725 601 IPGAQ---VTRKADLRAAIQTMLDTPGPYLLDVIFPHQE 636 (661)
Q Consensus 601 ~~~~~---v~~~~el~~al~~a~~~~gp~lIeV~~~~~~ 636 (661)
+++++ +.+++||+++|++|++.+||+||||.++...
T Consensus 158 ~~~va~~~~~~~~~l~~~i~~Al~~~Gp~lIeV~~pC~~ 196 (280)
T PRK11869 158 ASFVARTFSGDIEETKEILKEAIKHKGLAIVDIFQPCVS 196 (280)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEEECCCCC
Confidence 99998 8899999999999999999999999998644
No 97
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.92 E-value=1.2e-24 Score=222.91 Aligned_cols=175 Identities=18% Similarity=0.302 Sum_probs=131.3
Q ss_pred CCCCChHHHHHHHhhh------cCCCcEEEEcCChhHHHHHhhccccCCCeEEecCCC-CcccchHHHHHHhhhhCCCCc
Q 048725 450 EESIPPQYAIQVLDEL------TNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGL-GAMGFGLPAAIGAAVANPDAI 522 (661)
Q Consensus 450 ~~~i~~~~~~~~l~~~------l~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~-g~mG~~lpaAiGaala~p~~~ 522 (661)
|.++....++..|.+. .++|.++++|+|++. ..+ +|+...++ +.||+++|+|+|+++|+|+++
T Consensus 4 CpGCg~~~i~~~~~~a~~~l~~~p~d~iivsdiGc~~---------~~~-~~l~~~~~~t~mG~alPaAiGaklA~Pd~~ 73 (287)
T TIGR02177 4 CPGCGDFGILSALQRALAELNLDPEQVVVVSGIGCSA---------KTP-HYVNVNGFHGLHGRALPVATGIKLANPHLK 73 (287)
T ss_pred CCCCCChHHHHHHHHHHHHhcCCCCCEEEEECCCccc---------ccC-CeEecCCcccccccHHHHHHHHHHHCCCCc
Confidence 5556664444444333 367899999999875 123 45555555 458999999999999999999
Q ss_pred EEEEECCcccc-cChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHh--hcccccccccCCCCCcccCCccHHHHHhHc
Q 048725 523 IVDIDGDGSFI-MNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRF--YKANRAHTYLGDPSRESEIFPNMLKFAEAC 599 (661)
Q Consensus 523 vv~i~GDGsf~-~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~--~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~ 599 (661)
||+++|||+|+ |+++||+||+|+|+|+++||+||+.|||++.++... ++........++.. ....+++.++|+++
T Consensus 74 VVai~GDG~f~~mg~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~--~~~np~~~a~A~g~ 151 (287)
T TIGR02177 74 VIVVGGDGDLYGIGGNHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQ--DPVNPLLLAIALGY 151 (287)
T ss_pred EEEEeCchHHHhccHHHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCccC--CCCCHHHHHHhCCC
Confidence 99999999986 999999999999999999999999999998554321 11110001111110 01136788888888
Q ss_pred CCCEee-eCCHHHHHHHHHHHHhCCCcEEEEEEeCCCC
Q 048725 600 GIPGAQ-VTRKADLRAAIQTMLDTPGPYLLDVIFPHQE 636 (661)
Q Consensus 600 G~~~~~-v~~~~el~~al~~a~~~~gp~lIeV~~~~~~ 636 (661)
|+.+.. +.++++|+++|++|++.+||+||||.++.-.
T Consensus 152 g~va~~~~~~~~eL~~ai~~Al~~~GpslIeV~~pC~t 189 (287)
T TIGR02177 152 TFVARGFSGDVAHLKEIIKEAINHKGYALVDILQPCVT 189 (287)
T ss_pred CeEEEEecCCHHHHHHHHHHHHhCCCCEEEEEeCCCCC
Confidence 887776 6999999999999999999999999998544
No 98
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=99.91 E-value=1.1e-24 Score=202.09 Aligned_cols=134 Identities=43% Similarity=0.661 Sum_probs=122.0
Q ss_pred HHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCE
Q 048725 280 LEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDL 357 (661)
Q Consensus 280 l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDl 357 (661)
+++++++|.+|+||+|++|.++. ++.+++++|+|++|+||++++++||+||++||+|+|..|..++..+++++++||+
T Consensus 1 i~~~~~~L~~A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDl 80 (137)
T PF00205_consen 1 IDEAADLLSSAKRPVILAGRGARRSGAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADL 80 (137)
T ss_dssp HHHHHHHHHH-SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSE
T ss_pred CHHHHHHHHhCCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCE
Confidence 57899999999999999999987 7899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCcCCc-ccccCCCCeEEEEcCCchhhccCCCCcceEeccHHHHHHHH
Q 048725 358 LLAFGVRFDDRVTGK-LEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGI 413 (661)
Q Consensus 358 vL~vG~~~~~~~t~~-~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L 413 (661)
||++|++++++.+.+ +..+.++.++||||.|+.++++++++++.+++|++.+|++|
T Consensus 81 vl~iG~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~~~~~~~~~i~~d~~~~l~~L 137 (137)
T PF00205_consen 81 VLAIGTRLSDFNTYGFSPAFNPDAKIIQIDPDPAEIGKNYPPDVAIVGDIKAFLRAL 137 (137)
T ss_dssp EEEESSSSSTTTTTTTTGCSTTTSEEEEEESSGGGTTSSSEESEEEESHHHHHHHHH
T ss_pred EEEECCCCccccccccccccCCCCEEEEEECCHHHhCCCCCCCEEEEECHHHHhhCC
Confidence 999999999876543 44566666999999999999999999999999999999876
No 99
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=99.88 E-value=2.1e-20 Score=202.76 Aligned_cols=492 Identities=17% Similarity=0.171 Sum_probs=299.7
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCC----CCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchh
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSN----NIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPG 162 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~----~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG 162 (661)
-+.|.++|++.+-+.||..+-||||+++.+|.+.|.+.. ++.+-...||..|..+|.|-+...-|-.+.+.| ||
T Consensus 15 ~llGneAi~r~Ale~gV~~~aGYpGtPstei~e~la~~~~~l~~vy~e~s~NEkvA~e~a~GA~~~G~ral~~mKh--VG 92 (640)
T COG4231 15 LLLGNEAIARGALEAGVGVAAGYPGTPSTELIETLAKAKKILGDVYFEWSLNEKVALETAAGASYAGVRALVTMKH--VG 92 (640)
T ss_pred HhccHHHHHHHHHhcCceEEeccCCCCcHHHHHHHHHhhhhcCcEEEEecccHHHHHHHHHHhhhcCceeeEEecc--cc
Confidence 467899999999999999999999999999999998865 589999999999999999966555555566664 66
Q ss_pred hHHHHHHHHHhhhCCC--cEEEEecCCCCcccCCCCCCCCCHHHHhhcccc-cccccCCcCcHHHHHHHHHHHhhcCCCc
Q 048725 163 ATNLVSGLADALLDSV--PLVAITGQVPRRMIGTDAFQETPIVEVTRSITK-HNYLVLDVDDIPRIVREAFLLATSGRPG 239 (661)
Q Consensus 163 ~~N~l~gl~~A~~~~i--Pll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk-~~~~v~~~~~i~~~i~~A~~~a~s~~~G 239 (661)
+--+.-.+..+.+.++ -||+|+||.|..+ ..|.-.+.+.+..... +..++.++.++.+.+..||.++.... -
T Consensus 93 lNvAsDpl~s~ay~Gv~GGlviv~aDDpg~~----SSqneqdsr~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~-~ 167 (640)
T COG4231 93 LNVASDPLMSLAYAGVTGGLVIVVADDPGMH----SSQNEQDSRAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSG-L 167 (640)
T ss_pred cccchhhhhhhhhcCccccEEEEEccCCCcc----cccchhHhHHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhC-C
Confidence 6666777777777765 4999999999554 3344334444444433 45567788999999999999998765 6
Q ss_pred eEEEEeccchhhhccCCCCC----CCCC-----C---CCCCCCCCCCC---C----HHHHHHHHHHHHhCC---------
Q 048725 240 PVLIDVPKDIQQQLAVPNWN----QPIK-----L---PGYMSRLPKEP---S----EVHLEQIVRLISESK--------- 291 (661)
Q Consensus 240 PV~I~iP~dv~~~~~~~~~~----~~~~-----~---~~~~~~~~~~~---~----~~~l~~~~~~L~~Ak--------- 291 (661)
||-|..-.++.+.....+.. ++.. . +....+.|... . ...++++.+.+++.+
T Consensus 168 pVilr~ttr~~h~~~~V~~~~~~~~~~~~~~~~~~k~~~r~V~~p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v~~~~~ 247 (640)
T COG4231 168 PVILRTTTRVSHSRGDVEVGLNRRPIVEPEDEFFIKDPGRYVRVPANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDD 247 (640)
T ss_pred CEEEEEEeeeeccceeEEeccccCCCCccccccccCCccceeecCcccchhhHHHHHHHHHHHHHHHhhCcccccccCCC
Confidence 99999988876543211000 0000 0 00000111111 0 111333333443221
Q ss_pred -CcEEEEcCCccchHHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcC
Q 048725 292 -KPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVT 370 (661)
Q Consensus 292 -rPvIv~G~g~~~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t 370 (661)
+--|++.+. +...+++-.+.+|+-.. ..-.| ..||+-. .....+++.-+-||++-..-. +..
T Consensus 248 ~~lGII~~G~---ay~yVkeAl~~lgl~~~--~lklg---~~~Plp~--------~~i~~F~~g~~~vlVVEE~~P-~iE 310 (640)
T COG4231 248 AKLGIIASGI---AYNYVKEALEDLGLDDE--LLKLG---TPYPLPE--------QLIENFLKGLERVLVVEEGEP-FIE 310 (640)
T ss_pred CceEEEecCc---cHHHHHHHHHHcCCCce--eEEec---CCcCCCH--------HHHHHHHhcCcEEEEEecCCc-hHH
Confidence 111222222 23445555555554321 00001 1133321 233445566666666643321 111
Q ss_pred CcccccC-CCCeEEEEcCCchhhccC---CCCcceEeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCc
Q 048725 371 GKLEAFA-SRAKIVHIDIDSAEIGKN---KQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSF 446 (661)
Q Consensus 371 ~~~~~~~-~~~~vi~Id~d~~~i~~~---~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~ 446 (661)
.+...+. ....-+ .-.||. .+.. -.-+...+..+|...+...... ....-..+..+.....+.+.
T Consensus 311 ~qv~~~l~~~g~~v------~v~GKd~gllP~~--GElt~~~i~~ai~~~l~~~~~~---s~~~~~~~~~~~~~~~~~Rp 379 (640)
T COG4231 311 EQVKALLYDAGLPV------EVHGKDEGLLPME--GELTPEKIANAIAKFLGKEGSP---SYESIVAEVRKAAVLIPPRP 379 (640)
T ss_pred HHHHHHHHhcCCce------EeecccccccCcc--cccCHHHHHHHHHHHhCccCCc---ccccchhhhhcccccCCCCC
Confidence 1111111 000000 011221 1111 1235666777777777543210 11111122333333455667
Q ss_pred CCCCCCCChHHHHHHHhhhcCCCcEE-EEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEE
Q 048725 447 KTFEESIPPQYAIQVLDELTNGEAII-STGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVD 525 (661)
Q Consensus 447 ~~~~~~i~~~~~~~~l~~~l~~d~iv-~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~ 525 (661)
+..|.+++++..+..++.....-..- ..|+|++.+- ...|....... -.||.+++.|=|+.++.+ +++|+
T Consensus 380 P~lC~GCPHr~sf~~~k~~~~~~~~~~~~DIGCytlg------~~~P~~~~d~t--~~mGssig~a~g~~~~~~-k~~va 450 (640)
T COG4231 380 PALCPGCPHRPSFYALKKAAAELGGHPSGDIGCYTLG------ILPPLNTVDTT--TMMGSSIGIAGGLSFAST-KKIVA 450 (640)
T ss_pred CcCCCCCCCchhhHHHHHHHHhhCCCCCCCcceeecc------cCCCcchhhhh--hhccchhhhccccccccC-CceEE
Confidence 78899999988888877654221110 6788986542 23444433332 478888999999988875 88999
Q ss_pred EECCcccccC-hHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEe
Q 048725 526 IDGDGSFIMN-VQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGA 604 (661)
Q Consensus 526 i~GDGsf~~~-~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~ 604 (661)
++|||.|.|+ +..|..|+..+.+++++|++|..-+|+.+++..- . ....-|++ ...++++.+++++|+..+
T Consensus 451 ~iGDsTF~HsGi~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg--~--~~~~~g~~----~~~i~iee~~r~~Gv~~v 522 (640)
T COG4231 451 VIGDSTFFHSGILALINAVYNKANILVVVLDNRTTAMTGGQPHPG--T--GVAAEGTK----STAIVIEEVVRAMGVEDV 522 (640)
T ss_pred EeccccccccCcHHHHHHHhcCCCeEEEEEeccchhccCCCCCCC--c--ccccCCCc----cceeEhhHhhhhcCceee
Confidence 9999999997 8889999999999999999999988874322110 0 00111221 123799999999999887
Q ss_pred ee---CCHHHHHHHHHHHHhCCCcEEEEE
Q 048725 605 QV---TRKADLRAAIQTMLDTPGPYLLDV 630 (661)
Q Consensus 605 ~v---~~~~el~~al~~a~~~~gp~lIeV 630 (661)
++ .+.+++.++++++++..||+||-.
T Consensus 523 ~~vdp~~~~~~~~~~keale~~gpsViia 551 (640)
T COG4231 523 ETVDPYDVKELSEAIKEALEVPGPSVIIA 551 (640)
T ss_pred eccCCcchHHHHHHHHHHhcCCCceEEEE
Confidence 54 478899999999999999998844
No 100
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=99.83 E-value=4.8e-18 Score=200.10 Aligned_cols=488 Identities=18% Similarity=0.113 Sum_probs=291.6
Q ss_pred CCcHHHHHHHHHHH-------CCC---CEEEeccCCCcHHHHHHHHcCCC------CeEEccCChhHHHHHHHHHHH---
Q 048725 87 PRKGADILVEALER-------QGV---TDVFAYPGGASMEIHQALTRSNN------IRNVLPRHEQGGIFAAEGYAR--- 147 (661)
Q Consensus 87 ~~~gad~lv~~L~~-------~GV---~~vFg~PG~~~~~l~~aL~~~~~------i~~v~~~hE~~A~~~A~Gyar--- 147 (661)
-++|.|+|++.+.+ .|+ ..|-||||+++.++.+.|.+... |.+....||..|+-+|.|--+
T Consensus 27 ~l~G~qAivR~~l~q~~~D~~aG~~ta~~vsGYpGsP~~~id~~l~~~~~~l~~~~i~fe~~~NEkvAae~~~GsQ~~~~ 106 (1165)
T PRK09193 27 FLTGTQALVRLPLLQRERDRAAGLNTAGFVSGYRGSPLGGLDQELWRAKKHLAAHDIVFQPGLNEDLAATAVWGSQQVNL 106 (1165)
T ss_pred eeeHHHHHHHHHHHHhhHHHhcCCCccceEEeeCCCCHHHHHHHHHHhhhhhcccceEEeeccCHHHHHHHHhhhccccc
Confidence 58999999999988 999 99999999999999999987643 999999999999999977543
Q ss_pred -----HhCCcEEEEEccchhhHHHHHHHHHhhhCCC----cEEEEecCCCCcccCCCCCCCCCHHHHhhccccc-ccccC
Q 048725 148 -----SSGKPGICIATSGPGATNLVSGLADALLDSV----PLVAITGQVPRRMIGTDAFQETPIVEVTRSITKH-NYLVL 217 (661)
Q Consensus 148 -----~tg~~gv~~~tsGpG~~N~l~gl~~A~~~~i----Pll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~-~~~v~ 217 (661)
..|.-+++ .-=|||+--+.-++..+.+.++ -||+|+||.|.. ...|...+.+.+-...+. ...+.
T Consensus 107 ~~~a~~~Gv~~l~-y~K~pGvn~aaD~l~~~n~~G~~~~GGvv~v~gDDpg~----~SSq~eqdSr~~~~~a~iPvl~Ps 181 (1165)
T PRK09193 107 FPGAKYDGVFGMW-YGKGPGVDRSGDVFRHANAAGTSPHGGVLALAGDDHAA----KSSTLPHQSEHAFKAAGMPVLFPA 181 (1165)
T ss_pred ccceeeccceEEE-ecCcCCccccHhHHHHHHhhcCCCCCcEEEEEecCCCC----ccccchhhhHHHHHHcCCceeCCC
Confidence 34544444 3557998888888887777666 699999999944 334444344444333332 23566
Q ss_pred CcCcHHHHHHHHHHHhhcCCCceEEEEeccchhhhccCCCCCC-C--CCCCC----CCC----CCCCCCC---H----HH
Q 048725 218 DVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQ-P--IKLPG----YMS----RLPKEPS---E----VH 279 (661)
Q Consensus 218 ~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~dv~~~~~~~~~~~-~--~~~~~----~~~----~~~~~~~---~----~~ 279 (661)
++.++.+....||.++.... -||-+..-.++.+.....+..+ + ...+. ... +.+..+. . ..
T Consensus 182 ~~qE~~d~~~~g~~lSr~~g-~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~~~~g~~~r~~~~p~~~~~~~~~~r 260 (1165)
T PRK09193 182 NVQEILDYGLHGWAMSRYSG-LWVGMKTVTDVVESSASVDVDPDRVQIVLPEDFEMPPGGLNIRWPDPPLEQEARLLDYK 260 (1165)
T ss_pred CHHHHHHHHHHHHHHHHHhC-CCEEEEEEEEEeeeeeeEEcCCCcccCCCcccccCCcccccccCCCCcHHHHHHHHHHH
Confidence 78889999999999998655 6999988888765432111000 0 00110 000 1111111 1 12
Q ss_pred HHHHHHHHHhCCCcEEEEcC-----Ccc---chHHHHHHHHHHh----------CCCeeecCCCCCCCCCCCCCCCcccC
Q 048725 280 LEQIVRLISESKKPVLYVGG-----GCL---NSSEELRKFVELT----------GIPVASTLMGLGSFPGTDELSLQMLG 341 (661)
Q Consensus 280 l~~~~~~L~~AkrPvIv~G~-----g~~---~a~~~l~~lae~l----------g~PV~tt~~gkg~~p~~hpl~lg~~G 341 (661)
++.+.+..++.+---+..|. |.. .+...+++..+.+ |++++--.+ .+||.
T Consensus 261 l~a~~a~a~~n~ln~~~~~~~~~~iGIItsG~~y~~v~eal~~lg~~~~~~~~~gi~ilKvgm-------~~PL~----- 328 (1165)
T PRK09193 261 LYAALAYARANKLDRVVIDSPNARLGIVAAGKAYLDVRQALRDLGLDEETAARLGIRLYKVGM-------VWPLE----- 328 (1165)
T ss_pred HHHHHHHHHhCCCCeeecCCCCCCEEEEecCccHHHHHHHHHHcCCChhhhcccCCCEEEeCC-------CCCCC-----
Confidence 22333322211100111121 110 1233344444444 445543211 13442
Q ss_pred CCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCC---CcceEec--cHHHHHHHHHHH
Q 048725 342 MHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQ---PHVSVCA--DLKLALKGINRI 416 (661)
Q Consensus 342 ~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~---~~~~i~~--D~~~~L~~L~~~ 416 (661)
.....++.+..|-||+|-..-.... .+++...-+. ..++.|.-+||... +.+...+ |...+.+.|.+.
T Consensus 329 ---~~~i~~Fa~g~~~vlVVEE~~p~iE-~qlk~~l~~~---~~~~rp~v~GK~~~~g~~llp~~gEl~~~~va~~l~~~ 401 (1165)
T PRK09193 329 ---PQGVRAFAEGLDEILVVEEKRQIIE-YQLKEELYNW---PDDVRPRVIGKFDPQGNWLLPAHGELSPAIIAKAIARR 401 (1165)
T ss_pred ---HHHHHHHHhcCCEEEEEecCchHHH-HHHHHHHhhc---cCCcCceeEeeeCCCCCccCCCcCCcCHHHHHHHHHHH
Confidence 2345678889999999976643211 1111110000 00111222343210 0111222 344455555554
Q ss_pred hcCCCCC--CCCC---cHHHHHHHH---HHHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEEEEcCChhHHHHHhhcc
Q 048725 417 LGGKDAE--GRFD---FSAWREELD---EQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYK 488 (661)
Q Consensus 417 l~~~~~~--~~~~---~~~w~~~l~---~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~~~~~~~~ 488 (661)
+...... .... .-.|..... ......+.+.+.+|.+|++..... ++++.++..|+|||.+-...
T Consensus 402 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~P~fCsGCPH~~st~-----vp~gs~~~~dIGChtl~~~~--- 473 (1165)
T PRK09193 402 LLKLELPGDVRARIAARLAVLEAKEAALALPRVTAARTPYFCSGCPHNTSTR-----VPEGSRALAGIGCHYMATWM--- 473 (1165)
T ss_pred hhhcccccccchhhhhcccccccccccccccccCCCCCCCcCCCCCCcccee-----cCCCCEEecCcChhhhccCC---
Confidence 4321000 0000 001111000 000112345567888898887655 36778999999998774321
Q ss_pred ccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccC-hHHHHHHHHcCCCeEEEEEeCCcchhHHHHHH
Q 048725 489 YRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMN-VQELATIKVEKLPIKILLLNNQHLGMVMQWED 567 (661)
Q Consensus 489 ~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~-~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~ 567 (661)
|+.. .++-.||...+.++|.+....+++||+++|||.|+|+ +..|..|+..+.+++++|++|+.-+|+.+
T Consensus 474 ---p~~~---~~~~~MG~eg~~~~G~a~f~~~~hv~a~iGDgTffHSG~~al~~AV~~~~nit~~IL~N~~vAMTGg--- 544 (1165)
T PRK09193 474 ---DRNT---STFTQMGGEGVPWIGQAPFTDEKHVFQNLGDGTYFHSGLLAIRAAVAAGVNITYKILYNDAVAMTGG--- 544 (1165)
T ss_pred ---CCCC---CeeeccCCcchhhceeccccCCCcEEEEeccccchhcCHHHHHHHHhcCCCeEEEEEeCCcccccCC---
Confidence 2221 2345899999999998887778899999999999997 88899999999999999999999898722
Q ss_pred HhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeC--CHHHH-----------------HHHHHHHH-hCCCcEE
Q 048725 568 RFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVT--RKADL-----------------RAAIQTML-DTPGPYL 627 (661)
Q Consensus 568 ~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el-----------------~~al~~a~-~~~gp~l 627 (661)
+ |.......++++.+.+++|++.+.|- ++.++ .+++++++ +.+|++|
T Consensus 545 -----Q--------~~~g~~~~~~i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~lr~~~GvsV 611 (1165)
T PRK09193 545 -----Q--------PVDGGLSVPQITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQRELREIPGVTV 611 (1165)
T ss_pred -----C--------CCCCCcchhhHHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHHhcCCCcEE
Confidence 1 11111123799999999999888664 55554 35677777 6788877
Q ss_pred EE
Q 048725 628 LD 629 (661)
Q Consensus 628 Ie 629 (661)
|-
T Consensus 612 iI 613 (1165)
T PRK09193 612 LI 613 (1165)
T ss_pred EE
Confidence 63
No 101
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=99.82 E-value=2.1e-17 Score=195.47 Aligned_cols=489 Identities=17% Similarity=0.142 Sum_probs=293.7
Q ss_pred CCCCcHHHHHHHHHHH-------CCC---CEEEeccCCCcHHHHHHHHcCCC------CeEEccCChhHHHHHHHHHHHH
Q 048725 85 DQPRKGADILVEALER-------QGV---TDVFAYPGGASMEIHQALTRSNN------IRNVLPRHEQGGIFAAEGYARS 148 (661)
Q Consensus 85 ~~~~~gad~lv~~L~~-------~GV---~~vFg~PG~~~~~l~~aL~~~~~------i~~v~~~hE~~A~~~A~Gyar~ 148 (661)
..-++|.|+|++.+.+ .|+ ..|-||||+++.++.+.|.+... |.+....||..|+-+|.|-+..
T Consensus 17 ~~~l~GneAivr~~l~q~~~d~~aG~~ta~~vsgYpGsP~~~i~~~l~~~~~~l~~~~i~~e~~~NEkvA~e~a~Gaq~~ 96 (1159)
T PRK13030 17 RIFLTGTQALVRLLLMQRRRDRARGLNTAGFVSGYRGSPLGGVDQALWKAKKLLDASDIRFLPGINEELAATAVLGTQQV 96 (1159)
T ss_pred CEeeeHHHHHHHHHHHhhhHHHhcCCCccceEEEeCCCCHHHHHHHHHHhhhhhcccceEEeecCCHHHHHHHHHHhccc
Confidence 3368999999999999 999 99999999999999999987643 9999999999999999998844
Q ss_pred --------hCCcEEEEEccchhhHHHHHHHHHhhhCCC----cEEEEecCCCCcccCCCCCCCCCHHHHhhccccc-ccc
Q 048725 149 --------SGKPGICIATSGPGATNLVSGLADALLDSV----PLVAITGQVPRRMIGTDAFQETPIVEVTRSITKH-NYL 215 (661)
Q Consensus 149 --------tg~~gv~~~tsGpG~~N~l~gl~~A~~~~i----Pll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~-~~~ 215 (661)
.|.-+++ ..=|||+--+.-++..+.+.++ -||+|+||.|.. ...|.-.+.+.+....+. ..+
T Consensus 97 ~~~~~~~~~Gv~~l~-~~K~~GvnvaaD~l~~~n~~G~~~~GG~v~v~gDDpg~----~SSq~eqdSr~~~~~a~iPvl~ 171 (1159)
T PRK13030 97 EADPERTVDGVFAMW-YGKGPGVDRAGDALKHGNAYGSSPHGGVLVVAGDDHGC----VSSSMPHQSDFALIAWHMPVLN 171 (1159)
T ss_pred cccCCccccceEEEE-ecCcCCcccchhHHHHHHhhcCCCCCcEEEEEecCCCC----ccCcCHHHHHHHHHHcCCceeC
Confidence 3433333 3457998888888987777776 699999999943 444544445554443332 235
Q ss_pred cCCcCcHHHHHHHHHHHhhcCCCceEEEEeccchhhhccCCCCCC-C--CCCCC-C---C----CCCCCCCC-------H
Q 048725 216 VLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQ-P--IKLPG-Y---M----SRLPKEPS-------E 277 (661)
Q Consensus 216 v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~dv~~~~~~~~~~~-~--~~~~~-~---~----~~~~~~~~-------~ 277 (661)
+.+++++.+....||.++.... -||-+..-.++.+.....+..+ + ...+. + . .+.+..|. .
T Consensus 172 Ps~~qE~~d~~~~a~~lSr~~~-~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~~~~~~~~r~~~~p~~~~~~~~~ 250 (1159)
T PRK13030 172 PANVQEYLDFGLYGWALSRYSG-AWVGFKAISETVESGSTVDLDPDRTRWPAPEDFTPPAGGLHNRWPDLPSLAIEARLA 250 (1159)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC-CCEEEEEEEEEeeeeeeEEcCCCcccCCCccccCCCcccccccCCCCcHHHHHHHHH
Confidence 6788899999999999998655 6999988888765432111100 0 01110 0 0 01111111 1
Q ss_pred HHHHHHHHHHHhCCCcEEEE-cC----Ccc---chHHHHHHHHHHhCC-CeeecCCCCCCCCC--CCCCCCcccCCCCcH
Q 048725 278 VHLEQIVRLISESKKPVLYV-GG----GCL---NSSEELRKFVELTGI-PVASTLMGLGSFPG--TDELSLQMLGMHGTV 346 (661)
Q Consensus 278 ~~l~~~~~~L~~AkrPvIv~-G~----g~~---~a~~~l~~lae~lg~-PV~tt~~gkg~~p~--~hpl~lg~~G~~g~~ 346 (661)
..++.+.+..+..+-+-+.. |. |+. .+...+++..+.+|+ .......|..++-- .+||. ..
T Consensus 251 ~rl~~~~~~~~~~~ln~~~~~~~~~~iGIItsG~ay~~v~EAL~~Lgl~~~~~~~lgirilKvgm~~PL~--------~~ 322 (1159)
T PRK13030 251 AKLPAVRAFARANSIDRWVAPSPDARVGIVTCGKAHLDLMEALRRLGLDDADLRAAGIRIYKVGLSWPLE--------PT 322 (1159)
T ss_pred HHHHHHHHHHHhcCCCceeccCCCCCEEEEEeCccHHHHHHHHHHcCCCcccccccCccEEEeCCccCCC--------HH
Confidence 12333333222122121121 21 111 134556666666665 22122222221110 12331 23
Q ss_pred HHHHhhhcCCEEEEeCCCCCCCcCCccccc----CC--CCeEEEEcCCchhhccCCCCcceEec--cHHHHHHHHHHHhc
Q 048725 347 YANYAVDKSDLLLAFGVRFDDRVTGKLEAF----AS--RAKIVHIDIDSAEIGKNKQPHVSVCA--DLKLALKGINRILG 418 (661)
Q Consensus 347 ~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~----~~--~~~vi~Id~d~~~i~~~~~~~~~i~~--D~~~~L~~L~~~l~ 418 (661)
...++++..|-||+|-..-+.. ..++... .. ..+++-.. |.. |. +-+...+ +.....+.|.+.+.
T Consensus 323 ~i~~F~~g~d~VlVVEE~~p~i-E~Qlk~~l~~~~~~~~~~v~GK~-~~~--G~---pllp~~gEl~~~~v~~~l~~~l~ 395 (1159)
T PRK13030 323 RLREFADGLEEILVIEEKRPVI-EQQIKDYLYNRPGGARPRVVGKH-DED--GA---PLLSELGELRPSLIAPVLAARLA 395 (1159)
T ss_pred HHHHHHhcCCEEEEEeCCchHH-HHHHHHHHHhccccCCceeEEEE-CCC--CC---cCCCCcCCcCHHHHHHHHHHHHh
Confidence 4677889999999997664311 1111111 11 11222221 000 11 1111112 33444455555443
Q ss_pred CCCCCCCCCcHHHH-HHHHH---H-HhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEEEEcCChhHHHHHhhccccCCC
Q 048725 419 GKDAEGRFDFSAWR-EELDE---Q-KVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPR 493 (661)
Q Consensus 419 ~~~~~~~~~~~~w~-~~l~~---~-~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~~~~~~~~~~~p~ 493 (661)
.... ......|. ....+ . ....+.+.+.+|.+|++...+ .++++.++..|+||+.+-... + +..
T Consensus 396 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~R~P~~C~GCPH~~s~-----k~~~~~~~~gdIGC~tl~~~~-~---~~~ 464 (1159)
T PRK13030 396 RHKP--ALDRRARVVDLVAPQILSNEADAVVRTPYFCSGCPHNTST-----KVPEGSIAQAGIGCHFMASWM-D---RDT 464 (1159)
T ss_pred ccCc--cchhhhccccccccccccccccCCCCCCCcCCCCCCchhh-----ccCCCCEeecCcCHHHHhhcc-c---ccc
Confidence 2110 11111111 10000 0 012334567788899987776 234578899999998875432 1 111
Q ss_pred eEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccC-hHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcc
Q 048725 494 QWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMN-VQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKA 572 (661)
Q Consensus 494 ~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~-~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~ 572 (661)
.++-.||..++.++|.+....+++||+++|||.|+|+ +..|..|+..+.+++++|++|..-+|+. .
T Consensus 465 -----~~~~~MG~~g~~~~G~a~~~~~~~v~a~iGDgTf~HSG~~al~~AV~~~~nit~~IL~N~~tAMTG--------g 531 (1159)
T PRK13030 465 -----TGLTQMGGEGVDWIGHAPFTETKHVFQNLGDGTYFHSGSLAIRQAVAAGANITYKILYNDAVAMTG--------G 531 (1159)
T ss_pred -----ceeeccCccchhhceeccccCCCCEEEEeccchhhhcCHHHHHHHHhcCCCeEEEEEeCCcccccC--------C
Confidence 1235899999999999888778899999999999997 8899999999999999999999988862 1
Q ss_pred cccccccCCCCCcccCCccHHH---HHhHcCCCEeeeC--CHHH----------------HHHHHHHHH-hCCCcEEEE
Q 048725 573 NRAHTYLGDPSRESEIFPNMLK---FAEACGIPGAQVT--RKAD----------------LRAAIQTML-DTPGPYLLD 629 (661)
Q Consensus 573 ~~~~~~~g~p~~~~~~~~d~~~---~A~a~G~~~~~v~--~~~e----------------l~~al~~a~-~~~gp~lIe 629 (661)
+ ...| .+++.+ +++++|++.+.|. ++.+ ..+++++++ +.+|++||-
T Consensus 532 Q---p~~g--------~i~v~~i~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l~~~~GvsViI 599 (1159)
T PRK13030 532 Q---PVDG--------SISVPQIARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQRELRETPGVTVLI 599 (1159)
T ss_pred C---CCCC--------CCCHHHHHHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHHhcCCCcEEEE
Confidence 1 1111 156666 7779999888764 4333 345777777 678888773
No 102
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=99.76 E-value=7.9e-16 Score=181.09 Aligned_cols=485 Identities=18% Similarity=0.132 Sum_probs=283.5
Q ss_pred CCcHHHHHHHHH-------HHCCCC---EEEeccCCCcHHHHHHHHcC----C--CCeEEccCChhHHHHHHHHHHHH--
Q 048725 87 PRKGADILVEAL-------ERQGVT---DVFAYPGGASMEIHQALTRS----N--NIRNVLPRHEQGGIFAAEGYARS-- 148 (661)
Q Consensus 87 ~~~gad~lv~~L-------~~~GV~---~vFg~PG~~~~~l~~aL~~~----~--~i~~v~~~hE~~A~~~A~Gyar~-- 148 (661)
-++|.|+|++.+ .+.|++ .|-||||+++.++.+.|.+. . +|.+....||..|+-|..|-.++
T Consensus 30 ~l~G~qAlvR~~l~q~~~D~~aGl~tag~vsgYpGSPl~~id~~l~~~~~~l~~~~i~fe~~~NEklAatav~Gsq~~e~ 109 (1186)
T PRK13029 30 YISGTQALVRLPLLQRARDRRAGLNTAGFISGYRGSPLGALDQALWKAKKHLAAADVVFQPGVNEELAATAVWGSQQLEL 109 (1186)
T ss_pred eecHHHHHHHHHHHHhHHHHHcCCCccceEEecCCCCHHHHHHHHHHHhhhccccceEEeecCCHHHHHHHhhhhhhccc
Confidence 589999999999 999999 99999999999999999765 2 49999999999998888887654
Q ss_pred ------hCCcEEEEEccchhhHHHHHHHHHhh--hCCC--cEEEEecCCCCcccCCCCCCCCCHHHHhhccccc-ccccC
Q 048725 149 ------SGKPGICIATSGPGATNLVSGLADAL--LDSV--PLVAITGQVPRRMIGTDAFQETPIVEVTRSITKH-NYLVL 217 (661)
Q Consensus 149 ------tg~~gv~~~tsGpG~~N~l~gl~~A~--~~~i--Pll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~-~~~v~ 217 (661)
.|.-+++ ..=|||+--+.-++..+. ..+. -||+++||.|.. ...|...|.+.+-...+. ...+.
T Consensus 110 ~~~a~~dGv~~lw-ygK~pGvn~aaD~l~h~n~~gt~~~GGvv~v~gDDpg~----~SSq~eqdSr~~~~~a~iPvl~Ps 184 (1186)
T PRK13029 110 DPGAKRDGVFGMW-YGKGPGVDRSGDALRHANLAGTSPLGGVLVLAGDDHGA----KSSSVAHQSDHTFIAWGIPVLYPA 184 (1186)
T ss_pred ccceeeccceEEE-ecCcCCcccchhHHHHhhccccCCCCcEEEEEecCCCC----ccccCHHHHHHHHHHcCCceeCCC
Confidence 3333333 345788877777786554 3333 499999999844 444444444544333332 23466
Q ss_pred CcCcHHHHHHHHHHHhhcCCCceEEEEeccchhhhccCCCCCC-C--CCCCC-C---C----CCCCCCCC---H----HH
Q 048725 218 DVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQ-P--IKLPG-Y---M----SRLPKEPS---E----VH 279 (661)
Q Consensus 218 ~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~dv~~~~~~~~~~~-~--~~~~~-~---~----~~~~~~~~---~----~~ 279 (661)
++.++.+....||.++.... -||-+..-.++.+.....+..+ + ...+. + . .+.+..|. . ..
T Consensus 185 ~~qE~~d~~~~a~~lSr~~g-~~V~lr~~t~v~~s~~~V~~~~~r~~~~~p~~f~~~~~g~~~r~~~~p~~~e~~~~~~k 263 (1186)
T PRK13029 185 SVQDYLDYGLHGWAMSRYSG-LWVGMKCVTEVVESTASVDLDPDRVDIVLPDDFVLPPGGLHIRWPDDPLAQEERMLEFK 263 (1186)
T ss_pred CHHHHHHHHHHHHHHHHHhC-CCEEEEEeeeeeecceeeecCCcccccCCcccccCCccccccccCCCcHHHHHHHHHHH
Confidence 78888999999999998654 6999998888876532111111 0 00110 0 0 01111111 1 12
Q ss_pred HHHHHHHHHhCC-CcEEEEcC----Ccc---chHHHHHHHHHHhC----------CCeeecCCCCCCCCCCCCCCCcccC
Q 048725 280 LEQIVRLISESK-KPVLYVGG----GCL---NSSEELRKFVELTG----------IPVASTLMGLGSFPGTDELSLQMLG 341 (661)
Q Consensus 280 l~~~~~~L~~Ak-rPvIv~G~----g~~---~a~~~l~~lae~lg----------~PV~tt~~gkg~~p~~hpl~lg~~G 341 (661)
+..+.+...+.+ +-+.+-|. |+. .+...+++..+.+| ++++--.+ .+||-
T Consensus 264 l~a~~a~a~~n~ln~~~~~~~~~~~GIItsG~~y~~v~eAl~~lgl~~~~~~~~gi~ilKvgm-------~~PL~----- 331 (1186)
T PRK13029 264 WYAALAYVRANRLNRLVIDGPNPRLGIIAAGKAYLDVRQALRDLGLDDATCAALGIRLLKVGC-------VWPLD----- 331 (1186)
T ss_pred HHHHHHHHHhCCCCEEeccCCCCCEEEEecCccHHHHHHHHHHcCCChhhccccCCCEEEeCC-------CCCCC-----
Confidence 223333222111 11222121 111 12334444444444 44543211 13432
Q ss_pred CCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCC--------------CCcceEec--c
Q 048725 342 MHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNK--------------QPHVSVCA--D 405 (661)
Q Consensus 342 ~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~--------------~~~~~i~~--D 405 (661)
.....++.+..|-||+|-..-.-.. .+++...-+. ..+..|.-+||.. ...+...+ |
T Consensus 332 ---~~~i~~Fa~g~d~vlVVEE~~p~iE-~qlk~~l~~~---~~~~rp~v~GK~~~~~~~~~~~~~~~g~~llp~~gEL~ 404 (1186)
T PRK13029 332 ---PQSVREFAQGLEEVLVVEEKRAVIE-YQLKEELYNW---REDVRPAIFGKFDHRDGAGGEWSVPAGRWLLPAHAELS 404 (1186)
T ss_pred ---HHHHHHHHhcCCEEEEEecCchHHH-HHHHHHHhhc---cCCcCCeeEecccccccccccccccccCCCCCcccCcC
Confidence 3345778889999999976533111 1111100000 0001111223321 01122222 3
Q ss_pred HHHHHHHHHHHhcCCCCCC--C---CCcHHHHHHHHH---HHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEEEEcCC
Q 048725 406 LKLALKGINRILGGKDAEG--R---FDFSAWREELDE---QKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVG 477 (661)
Q Consensus 406 ~~~~L~~L~~~l~~~~~~~--~---~~~~~w~~~l~~---~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G 477 (661)
...+...|.+.+....... . ...-.|...... .....+.+.+.+|.+|++.....+ +++.++..|+|
T Consensus 405 p~~va~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~R~P~fCsGCPH~~st~~-----~~gs~~~~dIG 479 (1186)
T PRK13029 405 PALIAKAIARRLAALGLPADVAARMDARVADIEAKERAAAQPRLLTERKPWFCSGCPHNTSTRV-----PEGSRALAGIG 479 (1186)
T ss_pred HHHHHHHHHHHHHhcCCCcccchhhhhhhhhcccccccccccccCCCCCCCcCCCCCCchhhcc-----CCCCEEecCcC
Confidence 4444555555542210000 0 000112111000 001123355678889988877655 46788999999
Q ss_pred hhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccC-hHHHHHHHHcCCCeEEEEEeC
Q 048725 478 QHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMN-VQELATIKVEKLPIKILLLNN 556 (661)
Q Consensus 478 ~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~-~~eL~ta~~~~lpv~ivV~NN 556 (661)
||.+-... .+.. .++-.||......+|.+-...+++||..+|||.|+|+ +..|..|+..+.+++++|++|
T Consensus 480 Chtl~~~~----~~~~-----~~~~~MGgeg~~~~G~a~f~~~~hv~aniGDgTffHSG~~alr~AV~~~~nit~kIL~N 550 (1186)
T PRK13029 480 CHYMAMWM----DRST-----EGFSQMGGEGVAWIGQMPFSRRRHVFQNLGDGTYFHSGLLAIRQAIAAGVNITYKILYN 550 (1186)
T ss_pred HHHHhhcc----cccc-----ceeeccCcchhhheeecccCCCCCEEEEeccccchhcCHHHHHHHHhcCCCEEEEEEeC
Confidence 98875422 1111 2335899999999999887778899999999999997 888999999999999999999
Q ss_pred CcchhHHHHHHHhhcccccccccCCCCCcccCCccHHH---HHhHcCCCEeeeCC--HHHH-----------------HH
Q 048725 557 QHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLK---FAEACGIPGAQVTR--KADL-----------------RA 614 (661)
Q Consensus 557 ~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~---~A~a~G~~~~~v~~--~~el-----------------~~ 614 (661)
+.-+|+. .+ |... .+++.+ +.++.|++.+.|-+ +.++ .+
T Consensus 551 ~avAMTG--------gQ--------p~~G---~~~v~~i~~~~~a~GV~~v~vv~d~p~~~~~~~~~~~gv~~~~R~~l~ 611 (1186)
T PRK13029 551 DAVAMTG--------GQ--------PVDG---VLTVPQIARQVHAEGVRRIVVVTDEPGKYRGVARLPAGVTVHHRDELD 611 (1186)
T ss_pred cchhccC--------CC--------CCCC---cCCHHHHHHHHHhCCccEEEEeCCCccccccccccCCccccccHHHHH
Confidence 9988862 11 1111 145555 77999998886644 4333 45
Q ss_pred HHHHHH-hCCCcEEEE
Q 048725 615 AIQTML-DTPGPYLLD 629 (661)
Q Consensus 615 al~~a~-~~~gp~lIe 629 (661)
++++.+ +.+|++||-
T Consensus 612 ~vq~~lr~~~GvsViI 627 (1186)
T PRK13029 612 AVQRELREVPGVSVLI 627 (1186)
T ss_pred HHHHHHhcCCCcEEEE
Confidence 677777 677887763
No 103
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.71 E-value=4.9e-17 Score=166.62 Aligned_cols=121 Identities=21% Similarity=0.216 Sum_probs=104.2
Q ss_pred CCcccchHHHHHHhhhhCC----CCcEEEEECCccccc--ChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccc
Q 048725 501 LGAMGFGLPAAIGAAVANP----DAIIVDIDGDGSFIM--NVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANR 574 (661)
Q Consensus 501 ~g~mG~~lpaAiGaala~p----~~~vv~i~GDGsf~~--~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~ 574 (661)
.|+||+++|+|+|++++.+ +++|+|++|||+|++ ++++|.++.++++|.+++|+||++|++.....
T Consensus 104 ~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~~~-------- 175 (255)
T cd02012 104 TGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPTD-------- 175 (255)
T ss_pred CcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCccccCcHh--------
Confidence 4899999999999999865 899999999999998 58999999999999999999999998742110
Q ss_pred cccccCCCCCcccCCccHHHHHhHcCCCEeeeC--CHHHHHHHHHHHHhC-CCcEEEEEEeCCCCCcC
Q 048725 575 AHTYLGDPSRESEIFPNMLKFAEACGIPGAQVT--RKADLRAAIQTMLDT-PGPYLLDVIFPHQEHVL 639 (661)
Q Consensus 575 ~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~~-~gp~lIeV~~~~~~~~~ 639 (661)
... ...||.+++++||+++.+|+ +.++|.++|+++.+. ++|++|++.|.+...+.
T Consensus 176 --~~~--------~~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~~~t~kg~g~~ 233 (255)
T cd02012 176 --DIL--------FTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIAKTIKGKGVP 233 (255)
T ss_pred --hcc--------CchhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEEEEeecccccC
Confidence 000 12699999999999999999 999999999999876 89999999999887543
No 104
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.70 E-value=5.1e-17 Score=172.66 Aligned_cols=117 Identities=26% Similarity=0.314 Sum_probs=98.3
Q ss_pred CCcccchHHHHHHhhhhC----CCCcEEEEECCcccccC--hHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccc
Q 048725 501 LGAMGFGLPAAIGAAVAN----PDAIIVDIDGDGSFIMN--VQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANR 574 (661)
Q Consensus 501 ~g~mG~~lpaAiGaala~----p~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~ 574 (661)
.+.||+++|.|+|++++. |+++|||++|||+|+++ .++|.||+++++|+++||+||+ |++....+..
T Consensus 121 ~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~-~~~~~~~~~~------ 193 (341)
T TIGR03181 121 NIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQ-WAISVPRSKQ------ 193 (341)
T ss_pred CchHhcchhHHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCC-Cccccchhhh------
Confidence 378999999999998886 89999999999999998 5889999999999999999997 7753211100
Q ss_pred cccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHH------HHHHHHHHhCCCcEEEEEEeCCCC
Q 048725 575 AHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADL------RAAIQTMLDTPGPYLLDVIFPHQE 636 (661)
Q Consensus 575 ~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el------~~al~~a~~~~gp~lIeV~~~~~~ 636 (661)
.. .+||.++|++||+++.+|+..+++ +.+++++.+.+||+||||+|.+..
T Consensus 194 ----~~--------~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIev~t~R~~ 249 (341)
T TIGR03181 194 ----TA--------APTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYRLG 249 (341)
T ss_pred ----hC--------CcCHHHHHhhCCCCEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEeecCC
Confidence 01 169999999999999999998886 888888888899999999998643
No 105
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=99.68 E-value=2.2e-16 Score=164.99 Aligned_cols=118 Identities=26% Similarity=0.306 Sum_probs=97.5
Q ss_pred CCCcccchHHHHHHhhhhC----CCCcEEEEECCcccccC--hHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhccc
Q 048725 500 GLGAMGFGLPAAIGAAVAN----PDAIIVDIDGDGSFIMN--VQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKAN 573 (661)
Q Consensus 500 ~~g~mG~~lpaAiGaala~----p~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~ 573 (661)
+.|+||+++|+|+|+++|. ++++||+++|||+|+++ .++|.+|+++++|+++||.||+ |++....+...
T Consensus 102 ~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~-~~i~~~~~~~~---- 176 (293)
T cd02000 102 GNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNG-YAISTPTSRQT---- 176 (293)
T ss_pred cccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCC-eeccCCHHHHh----
Confidence 4589999999999999985 78999999999999987 3779999999999999999996 99864332110
Q ss_pred ccccccCCCCCcccCCccHHHHHhHcCCCEeeeC--CHHHHHHHHHHHH----hCCCcEEEEEEeCCCC
Q 048725 574 RAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVT--RKADLRAAIQTML----DTPGPYLLDVIFPHQE 636 (661)
Q Consensus 574 ~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~lIeV~~~~~~ 636 (661)
. .+||.++|++||+++.+|+ +++++.+++++++ +.++|+||||.+.+..
T Consensus 177 ------~--------~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~ 231 (293)
T cd02000 177 ------A--------GTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLG 231 (293)
T ss_pred ------C--------CccHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEeccC
Confidence 1 1699999999999999997 4567777777766 4579999999998655
No 106
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.66 E-value=2.8e-16 Score=165.36 Aligned_cols=119 Identities=28% Similarity=0.397 Sum_probs=96.4
Q ss_pred CCCCcccchHHHHHHhhhhC----CCCcEEEEECCcccccC--hHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcc
Q 048725 499 GGLGAMGFGLPAAIGAAVAN----PDAIIVDIDGDGSFIMN--VQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKA 572 (661)
Q Consensus 499 ~~~g~mG~~lpaAiGaala~----p~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~ 572 (661)
++.|+||+++|.|+|+++|. +++.||+++|||+|++. ..+|.++..+++|+++||+||+ |++....+...
T Consensus 107 ~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~-yg~s~~~~~~~--- 182 (315)
T TIGR03182 107 GGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNL-YAMGTSVERSS--- 182 (315)
T ss_pred cCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCC-ccccCCHHHHh---
Confidence 34589999999999999997 78999999999999876 3679999999999999999995 99875432210
Q ss_pred cccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHH--HH----HHHHHHHHhCCCcEEEEEEeCCCC
Q 048725 573 NRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKA--DL----RAAIQTMLDTPGPYLLDVIFPHQE 636 (661)
Q Consensus 573 ~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~--el----~~al~~a~~~~gp~lIeV~~~~~~ 636 (661)
. .+||.++|++||+++.+|+..+ ++ +.+++++.+.+||+||||.|.+-.
T Consensus 183 -------~--------~~~~a~~A~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 237 (315)
T TIGR03182 183 -------S--------VTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFR 237 (315)
T ss_pred -------C--------CcCHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCcCC
Confidence 1 1699999999999999998644 44 445555556689999999997643
No 107
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=99.63 E-value=8.2e-16 Score=163.06 Aligned_cols=123 Identities=32% Similarity=0.500 Sum_probs=99.0
Q ss_pred CCeEEecCCCCcccchHHHHHHhhhhC-----------CCCcEEEEECCcccccC--hHHHHHHHHcCCCeEEEEEeCC-
Q 048725 492 PRQWLTSGGLGAMGFGLPAAIGAAVAN-----------PDAIIVDIDGDGSFIMN--VQELATIKVEKLPIKILLLNNQ- 557 (661)
Q Consensus 492 p~~~~~~~~~g~mG~~lpaAiGaala~-----------p~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~- 557 (661)
+..++ +++|+||+++|.|+|+++|. |++.|||++|||+|+.. ..+|.+|+++++|+++||.||+
T Consensus 120 ~~~~~--~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvifvv~NN~~ 197 (341)
T CHL00149 120 PHNFL--GGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQW 197 (341)
T ss_pred hcCcc--CCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhhhcHHHHHHHHHhhcCCCEEEEEEeCCe
Confidence 34444 46689999999999999994 78999999999999743 3469999999999999999998
Q ss_pred cchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHH------HHHHHHHHhCCCcEEEEEE
Q 048725 558 HLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADL------RAAIQTMLDTPGPYLLDVI 631 (661)
Q Consensus 558 g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el------~~al~~a~~~~gp~lIeV~ 631 (661)
+++.....+ .. .+||.++|++||+++.+|+..+.+ +.+++++.+.++|+||||.
T Consensus 198 ~i~~~~~~~------------~~--------~~d~a~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIev~ 257 (341)
T CHL00149 198 AIGMAHHRS------------TS--------IPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGDGPTLIEAL 257 (341)
T ss_pred eeecchhhe------------eC--------CccHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 455431100 00 169999999999999999988764 6788888888899999999
Q ss_pred eCCCC
Q 048725 632 FPHQE 636 (661)
Q Consensus 632 ~~~~~ 636 (661)
|.+-.
T Consensus 258 tyR~~ 262 (341)
T CHL00149 258 TYRFR 262 (341)
T ss_pred EecCC
Confidence 97654
No 108
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.60 E-value=2.1e-14 Score=147.84 Aligned_cols=184 Identities=16% Similarity=0.128 Sum_probs=136.6
Q ss_pred CCCCCCCChHHHHHHHhhhcCCCcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhh----CCCCc
Q 048725 447 KTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVA----NPDAI 522 (661)
Q Consensus 447 ~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala----~p~~~ 522 (661)
...|.++.+..+++.+.+++.++.|+++++|+...+...+- . .|.. .....+.||-+.+.|.|++.| .+++.
T Consensus 18 ~~~C~GCg~~~~~~~l~~a~g~~~vi~~~iGC~s~~~~~~p-~-~~~~--~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~ 93 (299)
T PRK11865 18 HRACAGCGAAIAMRLALKALGKNTVIVVATGCLEVITTPYP-E-TAWN--VPWIHVAFENAAAVASGIERAVKALGKKVN 93 (299)
T ss_pred CCCCcCCCcHHHHHHHHHHcCCCEEEEeCCCcccccCccCc-C-Cccc--cccchhhhcchHHHHHHHHHHHHHhcCCCe
Confidence 34578899999999999999999999999999887754321 1 1111 122336889999999998877 45678
Q ss_pred EEEEECCccccc-ChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCc-----ccCCccHHHHH
Q 048725 523 IVDIDGDGSFIM-NVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRE-----SEIFPNMLKFA 596 (661)
Q Consensus 523 vv~i~GDGsf~~-~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~-----~~~~~d~~~~A 596 (661)
||++.|||++.. .++.|..+++.+.++++||+||+.|+++..+... .......--..|... .....|+..+|
T Consensus 94 Vv~~~GDG~~~dIG~~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~--~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia 171 (299)
T PRK11865 94 VVAIGGDGGTADIGFQSLSGAMERGHNILYLMYDNEAYMNTGIQRSG--STPFGASTTTSPAGKYSRGEDRPKKNMPLIM 171 (299)
T ss_pred EEEEeCCchHhhccHHHHHHHHHcCCCeEEEEECCccccCCCCCCCC--CCCCCcccccCCCCcccCCCCCCCCCHHHHH
Confidence 999999999876 5899999999999999999999999997322110 000000000011111 12247999999
Q ss_pred hHcCCCEe---eeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCC
Q 048725 597 EACGIPGA---QVTRKADLRAAIQTMLDTPGPYLLDVIFPHQE 636 (661)
Q Consensus 597 ~a~G~~~~---~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~ 636 (661)
.++|+.|+ .+.++.++.++|++|++.+||+||+|..+...
T Consensus 172 ~a~g~~YVA~~~~~~~~~l~~~i~~A~~~~Gps~I~v~sPC~~ 214 (299)
T PRK11865 172 AAHGIPYVATASIGYPEDFMEKVKKAKEVEGPAYIQVLQPCPT 214 (299)
T ss_pred HHcCCCEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEEECCCCC
Confidence 99999887 45799999999999999999999999997654
No 109
>PRK05899 transketolase; Reviewed
Probab=99.58 E-value=2.6e-15 Score=172.62 Aligned_cols=119 Identities=21% Similarity=0.221 Sum_probs=103.5
Q ss_pred CCcccchHHHHHHhhhhCC--------------CCcEEEEECCcccccCh-H-HHHHHHHcCCCeEEEEEeCCcchhHHH
Q 048725 501 LGAMGFGLPAAIGAAVANP--------------DAIIVDIDGDGSFIMNV-Q-ELATIKVEKLPIKILLLNNQHLGMVMQ 564 (661)
Q Consensus 501 ~g~mG~~lpaAiGaala~p--------------~~~vv~i~GDGsf~~~~-~-eL~ta~~~~lpv~ivV~NN~g~g~~~~ 564 (661)
.|+||+++|+|+|+|++.+ +++|+|++|||+|+++. . +|.+|.++++|.+++|+||++|++...
T Consensus 117 ~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~~~~ 196 (624)
T PRK05899 117 TGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRISIDGP 196 (624)
T ss_pred CcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCCccccc
Confidence 5899999999999999976 78999999999999984 4 599999999999999999999988521
Q ss_pred HHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeC--CHHHHHHHHHHHHhCCCcEEEEEEeCCCCCc
Q 048725 565 WEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVT--RKADLRAAIQTMLDTPGPYLLDVIFPHQEHV 638 (661)
Q Consensus 565 ~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~~~gp~lIeV~~~~~~~~ 638 (661)
... .. ..||.+++++||+++.+|+ +.++|.++|+++.+.++|++|+|.|.+...+
T Consensus 197 ----------~~~-~~--------~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~a~~~~~P~vI~v~t~kg~g~ 253 (624)
T PRK05899 197 ----------TEG-WF--------TEDVKKRFEAYGWHVIEVDGHDVEAIDAAIEEAKASTKPTLIIAKTIIGKGA 253 (624)
T ss_pred ----------ccc-cc--------cccHHHHhccCCCeEEEECCCCHHHHHHHHHHHHhcCCCEEEEEEeEeccCC
Confidence 000 01 1699999999999999999 9999999999999888999999999877654
No 110
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.54 E-value=1.2e-13 Score=141.99 Aligned_cols=183 Identities=11% Similarity=0.059 Sum_probs=132.8
Q ss_pred CCCCCCChHHHHHHHhhhcCCCcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhC-----CCCc
Q 048725 448 TFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVAN-----PDAI 522 (661)
Q Consensus 448 ~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~-----p~~~ 522 (661)
..|.++....+++.+.+.+.++.|++.|+|+.......+ ++. .+-.+.....||.+++.|.|+++|. ++..
T Consensus 19 ~~C~GCG~~~~~~~l~~~lg~~~v~~~~iGC~~~~~g~~-p~~---~~~~~~i~~~~G~~~~~A~G~a~A~~~~~~~~~~ 94 (300)
T PRK11864 19 AACPGCGAPLGLRYLLKALGEKTVLVIPASCSTVIQGDT-PKS---PLTVPVLHTAFAATAAVASGIEEALKARGEKGVI 94 (300)
T ss_pred ccCCCCCCHHHHHHHHHHhCCCeEEEeCCCccceecCCC-Ccc---cccccceeehhhChHHHHHHHHHHHHhhCCCCcE
Confidence 356677778888888888888999999999876543221 211 1112223468999999999999985 4566
Q ss_pred EEEEECCccccc-ChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCC
Q 048725 523 IVDIDGDGSFIM-NVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGI 601 (661)
Q Consensus 523 vv~i~GDGsf~~-~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~ 601 (661)
||++.|||++.. .++.|..|+..++|+++||+||+.|+++..+... .......--..|........|+..+++++|+
T Consensus 95 Vva~~GDG~~~~~g~~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~--~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~g~ 172 (300)
T PRK11864 95 VVGWAGDGGTADIGFQALSGAAERNHDILYIMYDNEAYMNTGIQRSS--STPYGAWTTTTPGGKREHKKPVPDIMAAHKV 172 (300)
T ss_pred EEEEEccCccccccHHHHHHHHHhCcCEEEEEECCeeeecCCCCCCC--CCcCCCccccCCCCCcCCCCCHHHHHHHcCC
Confidence 777999999876 5889999999999999999999999987322110 0000000001122222234699999999999
Q ss_pred CEe---eeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCC
Q 048725 602 PGA---QVTRKADLRAAIQTMLDTPGPYLLDVIFPHQE 636 (661)
Q Consensus 602 ~~~---~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~ 636 (661)
.++ .+.++.++.+++++|++.+||++|++..+...
T Consensus 173 ~yVA~~~~~~~~~~~~~i~~A~~~~Gps~I~~~spC~~ 210 (300)
T PRK11864 173 PYVATASIAYPEDFIRKLKKAKEIRGFKFIHLLAPCPP 210 (300)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCC
Confidence 887 33588999999999999999999999987654
No 111
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=99.53 E-value=4.1e-14 Score=153.41 Aligned_cols=118 Identities=31% Similarity=0.428 Sum_probs=95.2
Q ss_pred CCCCcccchHHHHHHhhhh-----------CCCCcEEEEECCcccccC--hHHHHHHHHcCCCeEEEEEeCC-cchhHHH
Q 048725 499 GGLGAMGFGLPAAIGAAVA-----------NPDAIIVDIDGDGSFIMN--VQELATIKVEKLPIKILLLNNQ-HLGMVMQ 564 (661)
Q Consensus 499 ~~~g~mG~~lpaAiGaala-----------~p~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~-g~g~~~~ 564 (661)
++++.||+++|.|+|+++| .+++.|||++|||++... ..+|.+|..+++|+++||.||+ +++....
T Consensus 191 g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~ 270 (433)
T PLN02374 191 GGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL 270 (433)
T ss_pred CCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccChHHHHHHHHHHhCCCEEEEEeCCCEeecceee
Confidence 5668999999999999998 367899999999999865 5689999999999999999997 3333210
Q ss_pred HHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHH------HHHHHHHHhCCCcEEEEEEeCCCC
Q 048725 565 WEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADL------RAAIQTMLDTPGPYLLDVIFPHQE 636 (661)
Q Consensus 565 ~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el------~~al~~a~~~~gp~lIeV~~~~~~ 636 (661)
. .+ . .+|+.+.|++||+++++|+..+.+ +++++++.+.+||+|||+.+.+-.
T Consensus 271 -------~---~t--~--------~~dia~~A~a~G~~~~~VDG~D~~av~~a~~~A~~~Ar~g~gP~LIe~~tyR~~ 328 (433)
T PLN02374 271 -------R---AT--S--------DPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 328 (433)
T ss_pred -------e---cc--C--------CCCHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEecC
Confidence 0 00 0 268999999999999999877655 567777877889999999996543
No 112
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.41 E-value=9.8e-13 Score=129.03 Aligned_cols=112 Identities=23% Similarity=0.322 Sum_probs=90.6
Q ss_pred CCCcccchHHHHHHhhhhCC----CCcEEEEECCcccc--cChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhccc
Q 048725 500 GLGAMGFGLPAAIGAAVANP----DAIIVDIDGDGSFI--MNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKAN 573 (661)
Q Consensus 500 ~~g~mG~~lpaAiGaala~p----~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~ 573 (661)
..|++|.++|.|+|+|++.+ +++|+|++|||+|+ +.+++|.+|.++++|+++||.|| +|++. .
T Consensus 73 ~~G~lG~gl~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN-~~~~~---------~- 141 (195)
T cd02007 73 GTGHSSTSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDN-EMSIS---------P- 141 (195)
T ss_pred CCCchhhhHHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECC-CcccC---------C-
Confidence 34899999999999999865 68999999999998 77899999999988988855555 56642 0
Q ss_pred ccccccCCCCCcccCCccHHHHHhHcCCCEee-e--CCHHHHHHHHHHHHhCCCcEEEEEEeCCCC
Q 048725 574 RAHTYLGDPSRESEIFPNMLKFAEACGIPGAQ-V--TRKADLRAAIQTMLDTPGPYLLDVIFPHQE 636 (661)
Q Consensus 574 ~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~-v--~~~~el~~al~~a~~~~gp~lIeV~~~~~~ 636 (661)
+. -++..+++++|+.... + ++.+++.++++++.+.++|++|++.|.+..
T Consensus 142 --------~~------~~~~~~~~a~G~~~~~~vdG~d~~~l~~a~~~a~~~~~P~~I~~~T~kg~ 193 (195)
T cd02007 142 --------NV------GTPGNLFEELGFRYIGPVDGHNIEALIKVLKEVKDLKGPVLLHVVTKKGK 193 (195)
T ss_pred --------CC------CCHHHHHHhcCCCccceECCCCHHHHHHHHHHHHhCCCCEEEEEEEeccc
Confidence 00 1567788899987764 4 689999999999988889999999997643
No 113
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=99.36 E-value=1.8e-12 Score=122.26 Aligned_cols=103 Identities=24% Similarity=0.248 Sum_probs=87.0
Q ss_pred HHHHHHHHhCCCcEEEEcCCccc---hHHHHHHHHHHhCCCeeecCC------CCCCCCCCCCCCCcccCCCCcHHHHHh
Q 048725 281 EQIVRLISESKKPVLYVGGGCLN---SSEELRKFVELTGIPVASTLM------GLGSFPGTDELSLQMLGMHGTVYANYA 351 (661)
Q Consensus 281 ~~~~~~L~~AkrPvIv~G~g~~~---a~~~l~~lae~lg~PV~tt~~------gkg~~p~~hpl~lg~~G~~g~~~a~~~ 351 (661)
++++++|++||||+|++|.++.. +.+++++|+|++++||++|++ +||++|+ |+++|.+|..+.....+.
T Consensus 25 ~~aa~lI~~AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~~~~~~~~kgv~~~--~~~lg~lg~~~~~p~~e~ 102 (171)
T PRK00945 25 KIAAMMIKKAKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGGSYKGLIDKGVDAK--YINLHELTNYLKDPNWKG 102 (171)
T ss_pred HHHHHHHHhCCCcEEEECcCccccchHHHHHHHHHHHHCCCEEEccccccccccCCccCC--cccHHHHHhhccCchhhh
Confidence 57788999999999999999865 578899999999999999999 8999998 999999999888888888
Q ss_pred h---hcCCEEEEeCCCCCCC--cCCcccccCCCCeEEEEc
Q 048725 352 V---DKSDLLLAFGVRFDDR--VTGKLEAFASRAKIVHID 386 (661)
Q Consensus 352 l---~~aDlvL~vG~~~~~~--~t~~~~~~~~~~~vi~Id 386 (661)
+ .++|+||.+|+++.-. ....++.|.+ .|.|.||
T Consensus 103 ~~g~~~~DlvlfvG~~~~~~~~~l~~lk~f~~-~~~~~~~ 141 (171)
T PRK00945 103 LDGNGNYDLVIFIGVTYYYASQGLSALKHFSP-LKTITID 141 (171)
T ss_pred hcCCCCcCEEEEecCCchhHHHHHHHHhhcCC-ceEEEec
Confidence 8 7999999999998532 2234556666 6677666
No 114
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.34 E-value=3.7e-12 Score=145.33 Aligned_cols=122 Identities=23% Similarity=0.287 Sum_probs=97.6
Q ss_pred CCcccchHHHHHHhhhhC-----CCCcEEEEECCcccc--cChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhccc
Q 048725 501 LGAMGFGLPAAIGAAVAN-----PDAIIVDIDGDGSFI--MNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKAN 573 (661)
Q Consensus 501 ~g~mG~~lpaAiGaala~-----p~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~ 573 (661)
.|++|.++|.|+|+++|. ++++|+|++|||+++ |++++|.+|.++++|+ ++|+||++|++-.... .
T Consensus 116 ~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Eal~~A~~~~~nl-i~IvdnN~~~i~~~~~-~----- 188 (580)
T PRK05444 116 AGHSSTSISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEALNNAGDLKSDL-IVILNDNEMSISPNVG-A----- 188 (580)
T ss_pred CChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHHHHHHHhhCCCE-EEEEECCCCcCCCcch-h-----
Confidence 489999999999999985 678999999999995 8899999999999988 5788888887521100 0
Q ss_pred ccccccCCCCCcccCCccHHHHHhHcCCCEeee---CCHHHHHHHHHHHHhCCCcEEEEEEeCCCCCc
Q 048725 574 RAHTYLGDPSRESEIFPNMLKFAEACGIPGAQV---TRKADLRAAIQTMLDTPGPYLLDVIFPHQEHV 638 (661)
Q Consensus 574 ~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v---~~~~el~~al~~a~~~~gp~lIeV~~~~~~~~ 638 (661)
...+.. ..++.+++++||+++..+ ++.+++.++|+++.+.++|++|++.|.+...+
T Consensus 189 -~~~~~~--------~~~~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~~~~P~lI~~~T~kg~G~ 247 (580)
T PRK05444 189 -LSNYLA--------RLRSSTLFEELGFNYIGPIDGHDLDALIETLKNAKDLKGPVLLHVVTKKGKGY 247 (580)
T ss_pred -hhhhhc--------cccHHHHHHHcCCCeeeeeCCCCHHHHHHHHHHHHhCCCCEEEEEEecCCcCC
Confidence 000000 136778999999999854 79999999999998888999999999987654
No 115
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=99.34 E-value=3.2e-12 Score=119.91 Aligned_cols=103 Identities=24% Similarity=0.356 Sum_probs=86.3
Q ss_pred HHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeecCCC------CCCCCCCCCCCCcccCCCCcHHHHHhh
Q 048725 281 EQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTLMG------LGSFPGTDELSLQMLGMHGTVYANYAV 352 (661)
Q Consensus 281 ~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt~~g------kg~~p~~hpl~lg~~G~~g~~~a~~~l 352 (661)
++++++|++||||+|++|+++. ++.+++++|+|++|+||++|+.+ ||++ +||.++|.+|..+.....+.+
T Consensus 18 ~~aa~lLk~AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~~~~~~~kgv~--~~~~~lg~~g~~~~~p~~e~~ 95 (162)
T TIGR00315 18 KLVAMMIKRAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADTYRALIEAGIE--SEEMNLHEITQFLADPSWEGF 95 (162)
T ss_pred HHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCccccccccCCee--cCCCCHHHHHHhccCchhhhc
Confidence 5788899999999999999986 67899999999999999999988 8998 688889999988888888888
Q ss_pred ---hcCCEEEEeCCCCCC--CcCCcccccCCCCeEEEEc
Q 048725 353 ---DKSDLLLAFGVRFDD--RVTGKLEAFASRAKIVHID 386 (661)
Q Consensus 353 ---~~aDlvL~vG~~~~~--~~t~~~~~~~~~~~vi~Id 386 (661)
.++|+||.+|+++.- .....++.|. +.+.|-+|
T Consensus 96 ~g~g~~DlvlfvG~~~y~~~~~ls~lk~f~-~~~~i~l~ 133 (162)
T TIGR00315 96 DGEGNYDLVLFLGIIYYYLSQMLSSLKHFS-HIVTIAID 133 (162)
T ss_pred cCCCCcCEEEEeCCcchHHHHHHHHHHhhc-CcEEEEec
Confidence 899999999999821 1122345566 66777666
No 116
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=99.30 E-value=1.1e-11 Score=127.98 Aligned_cols=177 Identities=18% Similarity=0.252 Sum_probs=126.1
Q ss_pred CCCCCChHHHHHHHhhhc---------CCCcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCC
Q 048725 449 FEESIPPQYAIQVLDELT---------NGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANP 519 (661)
Q Consensus 449 ~~~~i~~~~~~~~l~~~l---------~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p 519 (661)
.|.++...-+++.|.+.+ +++..|++++|+...|.. |+. .+......|-+.+.|.|+++|++
T Consensus 17 ~CpGCG~~~~l~~i~~a~~~~~~l~~~~~c~~vvsgig~s~~~~~-y~~--------~~~~hs~~gra~a~atGik~A~~ 87 (294)
T COG1013 17 WCPGCGEFIILKLLTQALGDRAELGNATGCSVVVSGIGCSTRWPV-YVN--------PPWVHSLHGRAAAVATGIKLANP 87 (294)
T ss_pred cCCCCCchHHHHHHHHhccchhhhccCCCCeEEEeCCccCccccc-ccc--------CCceeeccCcchhhHHHHHHhcc
Confidence 355565555555554431 455677888887766543 322 12222466779999999999999
Q ss_pred CCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCccc-CCccHHHHHh
Q 048725 520 DAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESE-IFPNMLKFAE 597 (661)
Q Consensus 520 ~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~-~~~d~~~~A~ 597 (661)
+..||++.||| ++-..++.|..+.+.|.+|++||+||+.||++..+. ..- .+....--..|..... ...|...+|.
T Consensus 88 ~l~Viv~gGDG~~~dIG~~~l~h~~~Rn~dit~iv~DNevYgnTggQ~-S~t-Tp~G~~t~t~p~Gk~~~~k~d~~~la~ 165 (294)
T COG1013 88 ALSVIVIGGDGDAYDIGGNHLIHALRRNHDITYIVVDNEVYGNTGGQA-SPT-TPKGAKTKTTPYGKRSEKKKDPGLLAM 165 (294)
T ss_pred CCeEEEEecchhHhhhhhHHHHHHHHcCCCeEEEEECCeecccCCCcc-CCC-CCCCceeeecCCCCCcCCCCCHHHHHH
Confidence 99999999999 666799999999999999999999999999974322 100 0000000011221111 2249999999
Q ss_pred HcCCCEe---eeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCC
Q 048725 598 ACGIPGA---QVTRKADLRAAIQTMLDTPGPYLLDVIFPHQE 636 (661)
Q Consensus 598 a~G~~~~---~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~ 636 (661)
++|+.++ .+.++.++...+++|++.+||+||+|..+...
T Consensus 166 a~G~~yVAr~~~~~~~~l~~~i~kA~~~~Gps~I~v~sPC~t 207 (294)
T COG1013 166 AAGATYVARASVGDPKDLTEKIKKAAEHKGPSFIDVLSPCPT 207 (294)
T ss_pred HCCCCeEEEecccCHHHHHHHHHHHHhccCCeEEEEecCCCC
Confidence 9999887 45689999999999999999999999987543
No 117
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.05 E-value=1.2e-09 Score=125.59 Aligned_cols=139 Identities=17% Similarity=0.158 Sum_probs=94.9
Q ss_pred CCCcccchHHHHHHhhhhCCCCcEEEEECCccc--ccChHHHHHHHHcCCCeEEEEEeCCcchhHHH-------HHHHhh
Q 048725 500 GLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSF--IMNVQELATIKVEKLPIKILLLNNQHLGMVMQ-------WEDRFY 570 (661)
Q Consensus 500 ~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf--~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~-------~~~~~~ 570 (661)
+.|+||+++|+|+|++++.++++|+|++|||+| .+.+.++.+|.++++|+++ |+||++|.+-.. +.+-..
T Consensus 121 ~~gslg~a~G~A~a~~~~~~~~~v~~v~GDG~~~eG~~~Eal~~a~~~~~~li~-I~dnN~~~i~~~~~~~~~~l~~~~~ 199 (641)
T PRK12571 121 SSTSISAALGFAKARALGQPDGDVVAVIGDGSLTAGMAYEALNNAGAADRRLIV-ILNDNEMSIAPPVGALAAYLSTLRS 199 (641)
T ss_pred CcChHHHHHHHHHHHHHhCCCCeEEEEEeCchhhcchHHHHHHHHHHhCCCEEE-EEECCCeeecCCccHHHHHHHHHhc
Confidence 357899999999999999989999999999999 5678999999999998866 666666654211 111000
Q ss_pred cccc------ccccc-CCCCCcc----------cCCccHHHHHhHcCCCEe-eeC--CHHHHHHHHHHHHh-CCCcEEEE
Q 048725 571 KANR------AHTYL-GDPSRES----------EIFPNMLKFAEACGIPGA-QVT--RKADLRAAIQTMLD-TPGPYLLD 629 (661)
Q Consensus 571 ~~~~------~~~~~-g~p~~~~----------~~~~d~~~~A~a~G~~~~-~v~--~~~el~~al~~a~~-~~gp~lIe 629 (661)
.... ....+ ..|.... ....-....-++||+++. .|+ +.++|.++|+++.+ .++|.+|+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~~~~P~~I~ 279 (641)
T PRK12571 200 SDPFARLRAIAKGVEERLPGPLRDGARRARELVTGMIGGGTLFEELGFTYVGPIDGHDMEALLSVLRAARARADGPVLVH 279 (641)
T ss_pred CcchHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhccchhhHHHHcCCEEECccCCCCHHHHHHHHHHHHhCCCCCEEEE
Confidence 0000 00000 0000000 000012367799999999 675 89999999999876 58999999
Q ss_pred EEeCCCCCcC
Q 048725 630 VIFPHQEHVL 639 (661)
Q Consensus 630 V~~~~~~~~~ 639 (661)
+.|.....+.
T Consensus 280 ~~T~kGkG~~ 289 (641)
T PRK12571 280 VVTEKGRGYA 289 (641)
T ss_pred EEecCccCcc
Confidence 9998876543
No 118
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=99.03 E-value=3.6e-09 Score=110.92 Aligned_cols=190 Identities=14% Similarity=0.117 Sum_probs=129.6
Q ss_pred CcCCCCCCCChHHHHHHHhhhcCCCcEEEEcCChhHHHHHhhcccc----C---CCeEEecC--CCCcccchHHHHHHhh
Q 048725 445 SFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYR----R---PRQWLTSG--GLGAMGFGLPAAIGAA 515 (661)
Q Consensus 445 ~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~~~~~~~~~~----~---p~~~~~~~--~~g~mG~~lpaAiGaa 515 (661)
+|...|.++...-.++.|.+++.++.+|++..|+..+|+..+-..+ . .-.|..+. ..+..|+|+-.|+=..
T Consensus 4 ef~gACaGCget~y~klltqlfG~r~iIaNatGCssI~gg~~P~tp~~~~~~g~Gpaw~nslFEdnAe~g~G~~~a~~~~ 83 (365)
T cd03377 4 EFSGACAGCGETPYVKLLTQLFGDRMVIANATGCSSIYGGSAPTTPYTTNAKGRGPAWANSLFEDNAEFGLGMRLAVDQR 83 (365)
T ss_pred cccccCCCCchHHHHHHHHHHhCCCeEEEecCCCceeecCCCCCCcceeccCCCCCccccccccchhHHHhHHHHHHHHH
Confidence 3455677888888899999999999999999999988876441111 0 00122211 1244555555554332
Q ss_pred h------------------------------------------------h-----------C----CCCcEEEEECCc-c
Q 048725 516 V------------------------------------------------A-----------N----PDAIIVDIDGDG-S 531 (661)
Q Consensus 516 l------------------------------------------------a-----------~----p~~~vv~i~GDG-s 531 (661)
. . . ++..||++.||| +
T Consensus 84 r~~~~~~v~~~~~~~~~~~l~~~~~~wl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~d~l~~~~v~v~gGDG~~ 163 (365)
T cd03377 84 RERARELVQKLIEKIGDEELKTLLNAWLATEDDIEESRERVAKLKPLLAAEKDELAKELLSLADYLVKKSVWIIGGDGWA 163 (365)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHccccHHHHHHHHHHHHHHHhccCcHHHHHHHhhhhhccccceEEEecchhh
Confidence 1 1 1 125899999999 5
Q ss_pred cccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEe-e--eC-
Q 048725 532 FIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGA-Q--VT- 607 (661)
Q Consensus 532 f~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~-~--v~- 607 (661)
+-..++.|..+.+.|.+|++||+||..|+++..+. .. ..+....--..|........|...+|.++|..|+ + +.
T Consensus 164 ydIG~~~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~-S~-tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a~g~~YVA~~s~~~ 241 (365)
T cd03377 164 YDIGYGGLDHVLASGENVNILVLDTEVYSNTGGQA-SK-ATPLGAVAKFAAAGKRTGKKDLGMIAMSYGNVYVAQIALGA 241 (365)
T ss_pred hccchhhHHHHHHcCCCeEEEEECCcccccCCCcC-CC-CCCCcCcCccCCCCCCCCCcCHHHHHHHcCCCEEEEEeccc
Confidence 56789999999999999999999999999873211 10 0000000001222222223699999999999887 3 33
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEEeCCCC
Q 048725 608 RKADLRAAIQTMLDTPGPYLLDVIFPHQE 636 (661)
Q Consensus 608 ~~~el~~al~~a~~~~gp~lIeV~~~~~~ 636 (661)
++.++.+++++|++.+||++|+|..+...
T Consensus 242 ~~~~~~~~i~eA~~~~Gps~I~v~sPC~~ 270 (365)
T cd03377 242 NDNQTLKAFREAEAYDGPSLIIAYSPCIA 270 (365)
T ss_pred CHHHHHHHHHHHhcCCCCEEEEEEccCcc
Confidence 88999999999999999999999998654
No 119
>PLN02790 transketolase
Probab=99.00 E-value=1.4e-09 Score=125.30 Aligned_cols=119 Identities=25% Similarity=0.236 Sum_probs=96.1
Q ss_pred CCcccchHHHHHHhhhhCC--------------CCcEEEEECCcccccC--hHHHHHHHHcCCCeEEEEEeCCcchhHHH
Q 048725 501 LGAMGFGLPAAIGAAVANP--------------DAIIVDIDGDGSFIMN--VQELATIKVEKLPIKILLLNNQHLGMVMQ 564 (661)
Q Consensus 501 ~g~mG~~lpaAiGaala~p--------------~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~g~g~~~~ 564 (661)
.|.+|.+++.|+|+|+|.. +..|+|++|||+++-. ...+..|..++||-+++|+||++|++-..
T Consensus 104 tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~~i~~~ 183 (654)
T PLN02790 104 TGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHISIDGD 183 (654)
T ss_pred CCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecCCccccCC
Confidence 4789999999999998754 4679999999999864 66789999999998888888888876311
Q ss_pred HHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeee----CCHHHHHHHHHHHHh-CCCcEEEEEEeCCCCCc
Q 048725 565 WEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQV----TRKADLRAAIQTMLD-TPGPYLLDVIFPHQEHV 638 (661)
Q Consensus 565 ~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v----~~~~el~~al~~a~~-~~gp~lIeV~~~~~~~~ 638 (661)
. .... ..|+.+..++||+++..| ++.+++.++++++.+ .++|++|+++|.+...+
T Consensus 184 ~----------~~~~---------~~~~~~~f~a~G~~~~~vdgg~hd~~~l~~a~~~a~~~~~~P~lI~~~T~kG~G~ 243 (654)
T PLN02790 184 T----------EIAF---------TEDVDKRYEALGWHTIWVKNGNTDYDEIRAAIKEAKAVTDKPTLIKVTTTIGYGS 243 (654)
T ss_pred c----------cccc---------chhHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCeEEEEEEEeecCCC
Confidence 0 0000 137889999999999999 578899999999887 68999999999876643
No 120
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=98.96 E-value=5e-09 Score=119.37 Aligned_cols=130 Identities=19% Similarity=0.191 Sum_probs=93.2
Q ss_pred CCcccchHHHHHHhhhhC----CCCcEEEEECCccccc--ChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccc
Q 048725 501 LGAMGFGLPAAIGAAVAN----PDAIIVDIDGDGSFIM--NVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANR 574 (661)
Q Consensus 501 ~g~mG~~lpaAiGaala~----p~~~vv~i~GDGsf~~--~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~ 574 (661)
.|..|.+++.|+|+|+|. .++.|||++|||++.. .+..|..|..+++|+++||.||+ |++-.....
T Consensus 112 ~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~A~~~k~~li~Ii~dN~-~si~~~~~~------- 183 (581)
T PRK12315 112 VGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAELKSNLIIIVNDNQ-MSIAENHGG------- 183 (581)
T ss_pred CCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHHHHHhhCCCEEEEEECCC-CcCCCCCch-------
Confidence 356667899999988873 3578999999999987 36779999999998877776665 665311000
Q ss_pred cccccCCCCCcccCCccHHHHHhHcCCCEeee-C--CHHHHHHHHHHHHhCCCcEEEEEEeCCCCCcCC
Q 048725 575 AHTYLGDPSRESEIFPNMLKFAEACGIPGAQV-T--RKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLP 640 (661)
Q Consensus 575 ~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v-~--~~~el~~al~~a~~~~gp~lIeV~~~~~~~~~p 640 (661)
....+.. . ......|...++++||++++++ + +.+++.++++++.+.+||+||||+|.+...+.|
T Consensus 184 ~~~~l~~-~-~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~~~~gP~~i~~~T~kG~G~~~ 250 (581)
T PRK12315 184 LYKNLKE-L-RDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEVKDIDHPIVLHIHTLKGKGYQP 250 (581)
T ss_pred hhhhhhh-h-hhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHHhCCCCEEEEEEeecCCCCCh
Confidence 0000000 0 0000136778999999999988 4 899999999998888899999999998776433
No 121
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=98.94 E-value=4.2e-09 Score=110.34 Aligned_cols=118 Identities=28% Similarity=0.361 Sum_probs=84.9
Q ss_pred CCCcccchHHHHHHhhhhC-----CCCcEEEEECCcccccC--hHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcc
Q 048725 500 GLGAMGFGLPAAIGAAVAN-----PDAIIVDIDGDGSFIMN--VQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKA 572 (661)
Q Consensus 500 ~~g~mG~~lpaAiGaala~-----p~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~ 572 (661)
+.+.+|..+|-|.|+|+|. .++.+++++|||+..-. ...|.-|.-+++|++++|-||+ |+|- .+..
T Consensus 134 ~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~-yAiS--vp~~---- 206 (358)
T COG1071 134 GSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQ-YAIS--VPRS---- 206 (358)
T ss_pred CCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCC-ceee--cchh----
Confidence 3468888888888888873 33489999999999874 4457778889999999888886 9884 1110
Q ss_pred cccccccCCCCCcccCCccHHHHHhHcCCCEeeeCC--HHHHHH----HHHHHHhCCCcEEEEEEeCCCC
Q 048725 573 NRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTR--KADLRA----AIQTMLDTPGPYLLDVIFPHQE 636 (661)
Q Consensus 573 ~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~--~~el~~----al~~a~~~~gp~lIeV~~~~~~ 636 (661)
. ... ...+..-|.+||+++++|+- +-.+.+ |+++|.+.+||+|||+.|-+..
T Consensus 207 ---~---q~~------~~~~~~ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~ 264 (358)
T COG1071 207 ---R---QTA------AEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYG 264 (358)
T ss_pred ---h---ccc------chhHHhhhhccCCCeEEECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecC
Confidence 0 000 02466689999999999974 334444 4555555679999999998654
No 122
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=98.90 E-value=3.6e-09 Score=110.80 Aligned_cols=116 Identities=26% Similarity=0.401 Sum_probs=83.0
Q ss_pred CcccchHHHHHHhhhhC----CCCcEEEEECCcccccC--hHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhccccc
Q 048725 502 GAMGFGLPAAIGAAVAN----PDAIIVDIDGDGSFIMN--VQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRA 575 (661)
Q Consensus 502 g~mG~~lpaAiGaala~----p~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~ 575 (661)
+.+|..+|.|.|.++|. .+..+||+.|||+..-. ...|..|..+++|+++||.||+ |++....+...
T Consensus 101 ~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~-~aist~~~~~~------ 173 (300)
T PF00676_consen 101 SPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQ-YAISTPTEEQT------ 173 (300)
T ss_dssp SSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEES-EETTEEHHHHC------
T ss_pred ccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCC-cccccCccccc------
Confidence 56777788888888773 45679999999996653 3447888999999999999987 88853222110
Q ss_pred ccccCCCCCcccCCccHHHHHhHcCCCEeeeC--CHHHHHHHHHHHHh----CCCcEEEEEEeCCCC
Q 048725 576 HTYLGDPSRESEIFPNMLKFAEACGIPGAQVT--RKADLRAAIQTMLD----TPGPYLLDVIFPHQE 636 (661)
Q Consensus 576 ~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIeV~~~~~~ 636 (661)
. ..++...|++||+++++|+ ++.++.+++++|++ .+||+|||+++.+-.
T Consensus 174 ----~--------~~~~~~~a~~~gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~ 228 (300)
T PF00676_consen 174 ----A--------SPDIADRAKGYGIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLR 228 (300)
T ss_dssp ----S--------SSTSGGGGGGTTSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS
T ss_pred ----c--------ccchhhhhhccCCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCC
Confidence 0 1367788999999999995 66676666666554 579999999997543
No 123
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=98.88 E-value=3.9e-08 Score=106.07 Aligned_cols=158 Identities=20% Similarity=0.187 Sum_probs=123.9
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCC---CCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhh
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSN---NIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGA 163 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~---~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~ 163 (661)
-++|.++++....+.|++.+++||+++..++.+.|.+.. +..++..-+|.+|..||.|.+.+..| ++.+|||||+
T Consensus 6 ~~~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~~~~~~vq~E~E~aA~~~a~GAs~aG~R--a~TaTSg~Gl 83 (376)
T PRK08659 6 FLQGNEACAEGAIAAGCRFFAGYPITPSTEIAEVMARELPKVGGVFIQMEDEIASMAAVIGASWAGAK--AMTATSGPGF 83 (376)
T ss_pred EeehHHHHHHHHHHhCCCEEEEcCCCChHHHHHHHHHhhhhhCCEEEEeCchHHHHHHHHhHHhhCCC--eEeecCCCcH
Confidence 378999999999999999999999999999999998742 35788899999999999998877666 4457999999
Q ss_pred HHHHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhh-------cccccccccCCcCcHHHHHHHHHHHhhcC
Q 048725 164 TNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTR-------SITKHNYLVLDVDDIPRIVREAFLLATSG 236 (661)
Q Consensus 164 ~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~-------~itk~~~~v~~~~~i~~~i~~A~~~a~s~ 236 (661)
.=.+-++.-|...++|+|++..+++-...|... ..+|.++.. .+-...+...+++++-+...+||+.|..-
T Consensus 84 ~lm~E~~~~a~~~e~P~Viv~~~R~gp~tg~p~--~~~q~D~~~~~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~ 161 (376)
T PRK08659 84 SLMQENIGYAAMTETPCVIVNVQRGGPSTGQPT--KPAQGDMMQARWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKY 161 (376)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeecCCCCCCCCC--CcCcHHHHHHhcccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 999999988888899999999998844333211 122222211 11222334668888999999999999986
Q ss_pred CCceEEEEeccch
Q 048725 237 RPGPVLIDVPKDI 249 (661)
Q Consensus 237 ~~GPV~I~iP~dv 249 (661)
+ -||.+..-..+
T Consensus 162 ~-~PViv~~D~~l 173 (376)
T PRK08659 162 R-TPVIVLADEVV 173 (376)
T ss_pred C-CCEEEEechHh
Confidence 6 59998887644
No 124
>PRK12753 transketolase; Reviewed
Probab=98.85 E-value=1.5e-08 Score=116.97 Aligned_cols=119 Identities=18% Similarity=0.139 Sum_probs=95.2
Q ss_pred CCcccchHHHHHHhhhhCC--------------CCcEEEEECCcccccC--hHHHHHHHHcCCCeEEEEEeCCcchhHHH
Q 048725 501 LGAMGFGLPAAIGAAVANP--------------DAIIVDIDGDGSFIMN--VQELATIKVEKLPIKILLLNNQHLGMVMQ 564 (661)
Q Consensus 501 ~g~mG~~lpaAiGaala~p--------------~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~g~g~~~~ 564 (661)
.|++|.|++.|+|+|+|.. +.+|+|++|||+++-. ...+..|.+++||.+|+|+||+++.+-..
T Consensus 113 tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~~~i~~~ 192 (663)
T PRK12753 113 TGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGISIDGE 192 (663)
T ss_pred CCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCCCcCCCC
Confidence 4799999999999998731 4689999999999874 66688899999998888888888877311
Q ss_pred HHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEee-eC--CHHHHHHHHHHHHh-CCCcEEEEEEeCCCCCc
Q 048725 565 WEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQ-VT--RKADLRAAIQTMLD-TPGPYLLDVIFPHQEHV 638 (661)
Q Consensus 565 ~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~-v~--~~~el~~al~~a~~-~~gp~lIeV~~~~~~~~ 638 (661)
. ...+ .-|+.+..++||+++.. |+ +.+++.++++++.+ .++|++|++.|.....+
T Consensus 193 ~----------~~~~---------~~~~~~~f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~~~~~P~~I~~~T~kG~G~ 251 (663)
T PRK12753 193 T----------EGWF---------TDDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQSVKDKPSLIICRTIIGFGS 251 (663)
T ss_pred h----------hhhc---------ChhHHHHHHHcCCeEEceeCCCCHHHHHHHHHHHHHCCCCeEEEEEEEeecCCC
Confidence 1 1111 13789999999999995 75 88999999998876 47899999999877654
No 125
>PTZ00089 transketolase; Provisional
Probab=98.84 E-value=9.7e-09 Score=118.62 Aligned_cols=117 Identities=24% Similarity=0.240 Sum_probs=94.2
Q ss_pred CCcccchHHHHHHhhhhCC--------------CCcEEEEECCcccccC--hHHHHHHHHcCCCeEEEEEeCCcchhHHH
Q 048725 501 LGAMGFGLPAAIGAAVANP--------------DAIIVDIDGDGSFIMN--VQELATIKVEKLPIKILLLNNQHLGMVMQ 564 (661)
Q Consensus 501 ~g~mG~~lpaAiGaala~p--------------~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~g~g~~~~ 564 (661)
.|++|.+++.|+|+|+|.. +.+|+|++|||++.-. ...+..|..++||.+++|+||+++.+-..
T Consensus 115 tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~nLi~i~d~N~~~i~~~ 194 (661)
T PTZ00089 115 TGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLIVLYDDNKITIDGN 194 (661)
T ss_pred CcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCCEEEEEECCCcccccC
Confidence 4799999999999988742 5679999999999864 66788999999998888888888876311
Q ss_pred HHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeee---C-CHHHHHHHHHHHHhC-CCcEEEEEEeCCCC
Q 048725 565 WEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQV---T-RKADLRAAIQTMLDT-PGPYLLDVIFPHQE 636 (661)
Q Consensus 565 ~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v---~-~~~el~~al~~a~~~-~gp~lIeV~~~~~~ 636 (661)
. .... .-|+.+..++||+++..| + +.+++.++++++.+. ++|++|++.|.+..
T Consensus 195 ~----------~~~~---------~~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~~~~P~~I~~~T~kG~ 252 (661)
T PTZ00089 195 T----------DLSF---------TEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKSKGKPKLIIVKTTIGY 252 (661)
T ss_pred c----------cccc---------CccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEEeeecC
Confidence 1 0000 147889999999999999 3 899999999998874 69999999997654
No 126
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=98.83 E-value=1.4e-08 Score=117.23 Aligned_cols=119 Identities=23% Similarity=0.226 Sum_probs=95.0
Q ss_pred CCcccchHHHHHHhhhhCC--------------CCcEEEEECCcccccC--hHHHHHHHHcCCCeEEEEEeCCcchhHHH
Q 048725 501 LGAMGFGLPAAIGAAVANP--------------DAIIVDIDGDGSFIMN--VQELATIKVEKLPIKILLLNNQHLGMVMQ 564 (661)
Q Consensus 501 ~g~mG~~lpaAiGaala~p--------------~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~g~g~~~~ 564 (661)
.|++|.+++.|+|+|+|.. +.+|+|++|||+++-. ...+..|..++||.+++|+||++|++-..
T Consensus 109 tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N~~~i~~~ 188 (653)
T TIGR00232 109 TGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNRISIDGA 188 (653)
T ss_pred CcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCCCeeeccc
Confidence 3799999999999988732 5679999999999884 56688899999998888888888887311
Q ss_pred HHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeee-C--CHHHHHHHHHHHHhC-CCcEEEEEEeCCCCCc
Q 048725 565 WEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQV-T--RKADLRAAIQTMLDT-PGPYLLDVIFPHQEHV 638 (661)
Q Consensus 565 ~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v-~--~~~el~~al~~a~~~-~gp~lIeV~~~~~~~~ 638 (661)
. .... ..|+.+..++||+++.+| + +.+++.+|++++.+. ++|++|++.|.+...+
T Consensus 189 ~----------~~~~---------~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~A~~~a~~~~~~P~~I~~~T~~g~G~ 247 (653)
T TIGR00232 189 V----------DGSF---------TEDVAKRFEAYGWEVLEVEDGHDLAAIDAAIEEAKASKDKPTLIEVTTTIGFGS 247 (653)
T ss_pred c----------cccc---------CccHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHhCCCCCEEEEEEeeecccC
Confidence 0 0001 148999999999999999 4 688999999988776 4899999999876543
No 127
>PRK12754 transketolase; Reviewed
Probab=98.83 E-value=1.7e-08 Score=115.76 Aligned_cols=119 Identities=18% Similarity=0.196 Sum_probs=94.8
Q ss_pred CCcccchHHHHHHhhhhCC--------------CCcEEEEECCcccccC--hHHHHHHHHcCCCeEEEEEeCCcchhHHH
Q 048725 501 LGAMGFGLPAAIGAAVANP--------------DAIIVDIDGDGSFIMN--VQELATIKVEKLPIKILLLNNQHLGMVMQ 564 (661)
Q Consensus 501 ~g~mG~~lpaAiGaala~p--------------~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~g~g~~~~ 564 (661)
.|++|.|++.|+|+|+|.. +.+|+|++|||+++-. ...+..|.+++||.+++|++|+++++-..
T Consensus 113 tG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~~~idg~ 192 (663)
T PRK12754 113 TGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGH 192 (663)
T ss_pred CCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCCCccCcc
Confidence 3799999999999998731 5779999999999874 55688899999998888888888876311
Q ss_pred HHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEee-eC--CHHHHHHHHHHHHh-CCCcEEEEEEeCCCCCc
Q 048725 565 WEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQ-VT--RKADLRAAIQTMLD-TPGPYLLDVIFPHQEHV 638 (661)
Q Consensus 565 ~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~-v~--~~~el~~al~~a~~-~~gp~lIeV~~~~~~~~ 638 (661)
. ...+ ..|+.+..++||+++.+ |+ +.+++.+|++++.. .++|++|++.|.....+
T Consensus 193 ~----------~~~~---------~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~~~~~Pt~I~~~T~~g~G~ 251 (663)
T PRK12754 193 V----------EGWF---------TDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARAVTDKPSLLMCKTIIGFGS 251 (663)
T ss_pred h----------hhcc---------CccHHHHHHhcCCeEEeeECCCCHHHHHHHHHHHHhcCCCCEEEEEEeeeccCc
Confidence 1 0001 14899999999999998 64 78999999998875 58899999999876543
No 128
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=98.82 E-value=3e-08 Score=88.16 Aligned_cols=161 Identities=17% Similarity=0.269 Sum_probs=127.3
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNL 166 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~ 166 (661)
++++++++.+.|++.||+.++.+|-+....++.-+.+++.|..|....|..+...+.|.+.+.+||++++-.|| +.|.
T Consensus 3 kvn~seav~e~mkdagIdfa~slPC~~lk~ll~lveedp~i~~i~vtREEeg~GIcAGa~lAGkk~ailmQnsG--lGNs 80 (172)
T COG4032 3 KVNPSEAVYEAMKDAGIDFACSLPCDNLKNLLPLVEEDPEIPEIPVTREEEGVGICAGAYLAGKKPAILMQNSG--LGNS 80 (172)
T ss_pred ccCHHHHHHHHHHHcCCcEEEeccHHHHHhHHHHHhcCCCcccccccchhcceeeehhhhhcCCCcEEEEeccC--cchH
Confidence 67899999999999999999999999999999999998889999999999999999999999999999988765 5599
Q ss_pred HHHHHHhh-hCCCcEEEEecCCCCcccCCCCCCCCCH----HHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceE
Q 048725 167 VSGLADAL-LDSVPLVAITGQVPRRMIGTDAFQETPI----VEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPV 241 (661)
Q Consensus 167 l~gl~~A~-~~~iPll~ItG~~p~~~~g~~~~q~~~~----~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV 241 (661)
+|+++.-| .-++|+++|...+.....+-.+ +++. ..+.+..--..+.+..+++...++..|+..+.... .||
T Consensus 81 iNal~SL~~ty~iPl~ml~ShRG~~~E~i~A--QVpmGr~~~kiLe~~~lpt~t~~~p~Ea~~li~~~~~~a~~~s-~pv 157 (172)
T COG4032 81 INALASLYVTYKIPLLMLASHRGVLKEGIEA--QVPMGRALPKILEGLELPTYTIIGPEEALPLIENAILDAFENS-RPV 157 (172)
T ss_pred HHHHHHHHHHhccchhhhhhccchhhcCCcc--ccccchhhHHHHhhcCCcccccCCHHHHHHHHHHHHHHHHHcC-Cce
Confidence 99998877 4589999999866533222111 1221 23444444446678889998889999998888654 588
Q ss_pred EEEeccchhhh
Q 048725 242 LIDVPKDIQQQ 252 (661)
Q Consensus 242 ~I~iP~dv~~~ 252 (661)
-+-+-..++++
T Consensus 158 ~vlls~~~We~ 168 (172)
T COG4032 158 AVLLSPKYWEA 168 (172)
T ss_pred EEEechHHhhh
Confidence 88776666544
No 129
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=98.81 E-value=1.5e-08 Score=102.89 Aligned_cols=118 Identities=19% Similarity=0.235 Sum_probs=85.7
Q ss_pred CCCCcccchHHHHHHhhhhC---------CCCcEEEEECCcccc-c-ChHH-HHHHHHcCCC---eEEEEEeCCcchhHH
Q 048725 499 GGLGAMGFGLPAAIGAAVAN---------PDAIIVDIDGDGSFI-M-NVQE-LATIKVEKLP---IKILLLNNQHLGMVM 563 (661)
Q Consensus 499 ~~~g~mG~~lpaAiGaala~---------p~~~vv~i~GDGsf~-~-~~~e-L~ta~~~~lp---v~ivV~NN~g~g~~~ 563 (661)
.+-+.+|..+|.|.|+++|. .+..+|++.|||+|- - .+.| |..|.-+++| +++||.||+ |++..
T Consensus 110 ~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveNNq-~g~sT 188 (265)
T cd02016 110 PNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNNQ-IGFTT 188 (265)
T ss_pred CCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCC-EEEEe
Confidence 34467888888888888874 145679999999973 3 3444 5556777888 888888886 88753
Q ss_pred HHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeC--CHHHHHHHHHHHHh----CCCcEEEEEEeCCC
Q 048725 564 QWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVT--RKADLRAAIQTMLD----TPGPYLLDVIFPHQ 635 (661)
Q Consensus 564 ~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIeV~~~~~ 635 (661)
...... . ..+..+.|++||+++.+|+ +++.+.++.++|++ .+||+|||+++-+-
T Consensus 189 ~~~~~~----------~--------~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~gp~lIe~~tYR~ 248 (265)
T cd02016 189 DPRDSR----------S--------SPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFKKDVVIDLVCYRR 248 (265)
T ss_pred cHHHhc----------c--------cccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEEecC
Confidence 221110 0 1468889999999999995 77777777776664 57899999999764
No 130
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=98.80 E-value=1.1e-08 Score=107.89 Aligned_cols=119 Identities=21% Similarity=0.225 Sum_probs=90.3
Q ss_pred CCcccchHHHHHHhhhhCC--------------CCcEEEEECCcccccC--hHHHHHHHHcCCCeEEEEEeCCcchhHHH
Q 048725 501 LGAMGFGLPAAIGAAVANP--------------DAIIVDIDGDGSFIMN--VQELATIKVEKLPIKILLLNNQHLGMVMQ 564 (661)
Q Consensus 501 ~g~mG~~lpaAiGaala~p--------------~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~g~g~~~~ 564 (661)
.|++|.|++.|+|+|+|.. +.+|+|++|||.++-. +..+..|.+++|+-+++|+|+++..+.
T Consensus 110 tGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~~q~d-- 187 (332)
T PF00456_consen 110 TGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGHYKLDNLIVIYDSNGIQID-- 187 (332)
T ss_dssp -SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEEESEETT--
T ss_pred ccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHHhCCCCEEEEEecCCcccC--
Confidence 3899999999999999741 4579999999999974 677899999999988888887776552
Q ss_pred HHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeee---CCHHHHHHHHHHHHhC-CCcEEEEEEeCCCCCc
Q 048725 565 WEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQV---TRKADLRAAIQTMLDT-PGPYLLDVIFPHQEHV 638 (661)
Q Consensus 565 ~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v---~~~~el~~al~~a~~~-~gp~lIeV~~~~~~~~ 638 (661)
+.. ...+ ..|+.+.-++||++..+| ++.++|.+||+++.+. ++|++|.+.|-....+
T Consensus 188 ------g~~--~~~~---------~~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~~~~kP~~Ii~~TvkG~G~ 248 (332)
T PF00456_consen 188 ------GPT--DIVF---------SEDIAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKASKGKPTVIIARTVKGKGV 248 (332)
T ss_dssp ------EEG--GGTH---------HSHHHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHHSTSS-EEEEEEE-TTTTS
T ss_pred ------CCc--cccc---------chHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHhcCCCCceeecceEEecCc
Confidence 110 0000 137889999999999999 7999999999999876 8999999999876643
No 131
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=98.79 E-value=2.6e-08 Score=106.41 Aligned_cols=115 Identities=21% Similarity=0.280 Sum_probs=82.7
Q ss_pred CCcccchHHHHHHhhhhC----CCCcEEEEECCcccccC--hHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccc
Q 048725 501 LGAMGFGLPAAIGAAVAN----PDAIIVDIDGDGSFIMN--VQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANR 574 (661)
Q Consensus 501 ~g~mG~~lpaAiGaala~----p~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~ 574 (661)
.+.+|.++|.|+|+++|. .+..++|++|||+..-. ...|..|..+++|+++||.||+ |++....+..
T Consensus 137 ~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lPvvfvveNN~-~aist~~~~~------ 209 (362)
T PLN02269 137 HGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCENNH-YGMGTAEWRA------ 209 (362)
T ss_pred CchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHhhccCcCEEEEEeCCC-EeccCchhhh------
Confidence 368888888888888874 46789999999997764 4557778899999888888877 8874211100
Q ss_pred cccccCCCCCcccCCccHHHHHhHcCCCEeeeC--CHHHHHHHHHHHHh---CCCcEEEEEEeCCCC
Q 048725 575 AHTYLGDPSRESEIFPNMLKFAEACGIPGAQVT--RKADLRAAIQTMLD---TPGPYLLDVIFPHQE 636 (661)
Q Consensus 575 ~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~---~~gp~lIeV~~~~~~ 636 (661)
....+|. .+++++++.+|+ ++.++..+++++.+ .+||+|||+.|.+-.
T Consensus 210 ------------~~~~~~~--~~~~~~p~~~VDG~D~~av~~a~~~A~~~aR~~gP~lIe~~tyR~~ 262 (362)
T PLN02269 210 ------------AKSPAYY--KRGDYVPGLKVDGMDVLAVKQACKFAKEHALSNGPIVLEMDTYRYH 262 (362)
T ss_pred ------------ccchHHH--HhhcCCCeEEECCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCcCC
Confidence 0013454 355788899995 77777777776553 289999999997643
No 132
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=98.79 E-value=8.2e-08 Score=103.25 Aligned_cols=159 Identities=19% Similarity=0.178 Sum_probs=125.1
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcC---CCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhh
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRS---NNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGA 163 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~---~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~ 163 (661)
-++|.++++....+.|++.+.+||+++..++.+.|.+. -+..++.+-+|.+|..||.|.+.+..| ++..|||||+
T Consensus 5 ~~~GNeAiA~ga~~ag~~~~a~YPITPsTeI~e~la~~~~~~g~~~vq~E~E~aA~~~a~GAs~aG~R--a~taTSg~G~ 82 (375)
T PRK09627 5 ISTGNELVAKAAIECGCRFFGGYPITPSSEIAHEMSVLLPKCGGTFIQMEDEISGISVALGASMSGVK--SMTASSGPGI 82 (375)
T ss_pred EechHHHHHHHHHHhCCCEEEEeCCCChhHHHHHHHHHHHHcCCEEEEcCCHHHHHHHHHHHHhhCCC--EEeecCCchH
Confidence 46899999999999999999999999999999998764 257899999999999999998877776 4457999999
Q ss_pred HHHHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhh-------cccccccccCCcCcHHHHHHHHHHHhhcC
Q 048725 164 TNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTR-------SITKHNYLVLDVDDIPRIVREAFLLATSG 236 (661)
Q Consensus 164 ~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~-------~itk~~~~v~~~~~i~~~i~~A~~~a~s~ 236 (661)
+=..-.+.-|...++|++++..+++-...|.- -..+|.++.. .+.+-.+...+++++-+...+||+.|..-
T Consensus 83 ~lm~E~~~~a~~~e~P~V~~~~~R~GpstG~p--~~~~q~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~ 160 (375)
T PRK09627 83 SLKAEQIGLGFIAEIPLVIVNVMRGGPSTGLP--TRVAQGDVNQAKNPTHGDFKSIALAPGSLEEAYTETVRAFNLAERF 160 (375)
T ss_pred HHHhhHHHHHHhccCCEEEEEeccCCCcCCCC--CccchHHHHHHhcCCCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999763322221 1122222222 22223344667888999999999999965
Q ss_pred CCceEEEEeccchh
Q 048725 237 RPGPVLIDVPKDIQ 250 (661)
Q Consensus 237 ~~GPV~I~iP~dv~ 250 (661)
+ =||.+..-..+.
T Consensus 161 ~-~PViv~~D~~ls 173 (375)
T PRK09627 161 M-TPVFLLLDETVG 173 (375)
T ss_pred c-CceEEecchHHh
Confidence 5 699988877543
No 133
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=98.77 E-value=1.2e-07 Score=101.53 Aligned_cols=157 Identities=21% Similarity=0.197 Sum_probs=124.7
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcC---CCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhh
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRS---NNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGA 163 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~---~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~ 163 (661)
-++|.++++....+.|++.+.+||++++.++.+.|.+. -+..++..-+|.+|..||.|.+.+..| ++.+|||||+
T Consensus 6 ~~~GNeAiA~ga~~ag~~~~a~YPiTPsTeI~e~la~~~~~~~~~~vq~E~E~aA~~~a~GAs~aG~R--a~taTSg~Gl 83 (352)
T PRK07119 6 LMKGNEAIAEAAIRAGCRCYFGYPITPQSEIPEYMSRRLPEVGGVFVQAESEVAAINMVYGAAATGKR--VMTSSSSPGI 83 (352)
T ss_pred eehHHHHHHHHHHHhCCCEEEEeCCCCchHHHHHHHHHHHHhCCEEEeeCcHHHHHHHHHHHHhhCCC--EEeecCcchH
Confidence 47899999999999999999999999999999999764 235789999999999999998877776 3346899999
Q ss_pred HHHHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhc-------cccc-ccccCCcCcHHHHHHHHHHHhhc
Q 048725 164 TNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRS-------ITKH-NYLVLDVDDIPRIVREAFLLATS 235 (661)
Q Consensus 164 ~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~-------itk~-~~~v~~~~~i~~~i~~A~~~a~s 235 (661)
+-..-++.-|.-.++|++++..+++..-.| ..| .+|.+++-. -+.| .+...+++++-+...+||+.|..
T Consensus 84 ~lm~E~l~~a~~~e~P~v~v~v~R~~p~~g--~t~-~eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~ 160 (352)
T PRK07119 84 SLKQEGISYLAGAELPCVIVNIMRGGPGLG--NIQ-PSQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADK 160 (352)
T ss_pred HHHHHHHHHHHHccCCEEEEEeccCCCCCC--CCc-chhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888887643222 222 344444211 1122 33467888999999999999997
Q ss_pred CCCceEEEEeccch
Q 048725 236 GRPGPVLIDVPKDI 249 (661)
Q Consensus 236 ~~~GPV~I~iP~dv 249 (661)
-+ -||.+..-..+
T Consensus 161 ~~-~PViv~~D~~l 173 (352)
T PRK07119 161 YR-NPVMVLGDGVL 173 (352)
T ss_pred hC-CCEEEEcchhh
Confidence 65 59998886654
No 134
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=98.68 E-value=2e-07 Score=106.03 Aligned_cols=160 Identities=21% Similarity=0.185 Sum_probs=126.7
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcC---CCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhh
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRS---NNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGA 163 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~---~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~ 163 (661)
.++|.++++....+.|++.+++||+++..++.+.|.+. .++.++..-+|.+|..||.|.+.+..| ++.+|||||+
T Consensus 195 ~l~GNeAvA~ga~~ag~~~~~~YPiTPsTei~e~la~~~~~~~~~~~q~E~E~aA~~~a~GAs~aG~R--a~taTSg~Gl 272 (562)
T TIGR03710 195 LISGNEAIALGAIAAGLRFYAAYPITPASDILEFLAKHLKKFGVVVVQAEDEIAAINMAIGASYAGAR--AMTATSGPGF 272 (562)
T ss_pred EeehHHHHHHHHHHhCCceecccCCCChhHHHHHHHHhhhhhCcEEEeeccHHHHHHHHHhHHhcCCc--eeecCCCCCh
Confidence 38899999999999999999999999999999999875 259999999999999999998877665 3447999999
Q ss_pred HHHHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcc-c------ccccccCCcCcHHHHHHHHHHHhhcC
Q 048725 164 TNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSI-T------KHNYLVLDVDDIPRIVREAFLLATSG 236 (661)
Q Consensus 164 ~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~i-t------k~~~~v~~~~~i~~~i~~A~~~a~s~ 236 (661)
.=+.-++.-|...++|+|++.+|++-...|. .-..+|.+++... . .-.....+++++-+...+||+.|..-
T Consensus 273 ~lm~E~l~~a~~~~~P~Vi~~~~R~gpstg~--~t~~eq~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~ 350 (562)
T TIGR03710 273 ALMTEALGLAGMTETPLVIVDVQRGGPSTGL--PTKTEQSDLLFALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKY 350 (562)
T ss_pred hHhHHHHhHHHhccCCEEEEEcccCCCCCCC--CCCccHHHHHHHhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998443221 1223343333221 2 11223567788889999999999975
Q ss_pred CCceEEEEeccchhh
Q 048725 237 RPGPVLIDVPKDIQQ 251 (661)
Q Consensus 237 ~~GPV~I~iP~dv~~ 251 (661)
+ -||.+..-..+.+
T Consensus 351 ~-~PViv~~D~~l~~ 364 (562)
T TIGR03710 351 Q-TPVIVLSDQYLAN 364 (562)
T ss_pred c-CCEEEEechHHhC
Confidence 5 7999888776543
No 135
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=98.67 E-value=1.4e-07 Score=108.27 Aligned_cols=135 Identities=21% Similarity=0.298 Sum_probs=91.3
Q ss_pred CCcccchHHHHHHhhhhC----CCCcEEEEECCccccc--ChHHHHHHHHcCCCeEEEEEeCCcchhHHHHH--HH----
Q 048725 501 LGAMGFGLPAAIGAAVAN----PDAIIVDIDGDGSFIM--NVQELATIKVEKLPIKILLLNNQHLGMVMQWE--DR---- 568 (661)
Q Consensus 501 ~g~mG~~lpaAiGaala~----p~~~vv~i~GDGsf~~--~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~--~~---- 568 (661)
.|..|.+++.|+|+|+|. .+..|+|++|||++.- .+..+..|..+++|+ ++|+||++|++-.... ..
T Consensus 110 ~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~~Ea~~~a~~~~l~~-i~ii~~N~~~i~~~~~~~~~~l~~ 188 (617)
T TIGR00204 110 AGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMAFEALNHAGDLKTDM-IVILNDNEMSISENVGALSNHLAQ 188 (617)
T ss_pred CCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccHHHHHHHHHhcCCCE-EEEEECCCcccCCCchHHHHHHHH
Confidence 467888999999988874 5678999999999986 477789999999999 6777777776642110 00
Q ss_pred -----hhcccc--cccccCCCCCcccCCcc-HH--------------HHHhHcCCCEe-ee--CCHHHHHHHHHHHHhCC
Q 048725 569 -----FYKANR--AHTYLGDPSRESEIFPN-ML--------------KFAEACGIPGA-QV--TRKADLRAAIQTMLDTP 623 (661)
Q Consensus 569 -----~~~~~~--~~~~~g~p~~~~~~~~d-~~--------------~~A~a~G~~~~-~v--~~~~el~~al~~a~~~~ 623 (661)
.|...+ .......... ..+ +. .+-++||+.+. .| ++.++|.++|+++.+.+
T Consensus 189 ~~~~~~y~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~k~~~~~~~~f~~~G~~~~~~vDGhd~~~l~~al~~ak~~~ 264 (617)
T TIGR00204 189 LRSGSLYQSLRDGLKKIFSKLPP----IKNYLAKRTEESMKGLVVPGTFFEELGFNYIGPVDGHDLLELIETLKNAKKLK 264 (617)
T ss_pred hhccchHHHHHHHHHHHHhcCcc----hhHHHHHHHHHhhhhccCccchHHHcCCcEEcccCCCCHHHHHHHHHHHhcCC
Confidence 000000 0000000000 001 11 24788999988 67 48999999999887778
Q ss_pred CcEEEEEEeCCCCCcCC
Q 048725 624 GPYLLDVIFPHQEHVLP 640 (661)
Q Consensus 624 gp~lIeV~~~~~~~~~p 640 (661)
+|.+|+|.|.+...+.+
T Consensus 265 ~P~~i~~~T~KGkG~~~ 281 (617)
T TIGR00204 265 GPVFLHIQTKKGKGYKP 281 (617)
T ss_pred CCEEEEEEecCCCCCch
Confidence 99999999998776544
No 136
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=98.65 E-value=4.4e-07 Score=98.10 Aligned_cols=154 Identities=18% Similarity=0.056 Sum_probs=120.8
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCC-----CCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccch
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSN-----NIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGP 161 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~-----~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGp 161 (661)
-++|.++++......|++.+++||+++..++.+.|.+.- ++.++..-+|.+|..||.|.+.+..| ++..||||
T Consensus 5 ~l~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~G~~~~~~~~~E~E~aA~~~aiGAs~aGaR--a~TaTSg~ 82 (390)
T PRK08366 5 VVSGNYAAAYAALHARVQVVAAYPITPQTSIIEKIAEFIANGEADIQYVPVESEHSAMAACIGASAAGAR--AFTATSAQ 82 (390)
T ss_pred EeeHHHHHHHHHHHhCCCEEEEECCCChhHHHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHhhCCC--eEeeeCcc
Confidence 478999999999999999999999999999999997651 37788888999999999999988776 34469999
Q ss_pred hhHHHHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhh-ccccccc-ccCCcCcHHHHHHHHHHHhhcCCCc
Q 048725 162 GATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTR-SITKHNY-LVLDVDDIPRIVREAFLLATSGRPG 239 (661)
Q Consensus 162 G~~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~-~itk~~~-~v~~~~~i~~~i~~A~~~a~s~~~G 239 (661)
|+.=+.-++.-|...++|+|+.-.+|+-.. +. .-..+|.+++. .-+.|.. ...+++++-+...+||+.|..-+ -
T Consensus 83 Gl~lm~E~l~~aa~~~lPiVi~~~~R~~p~-~~--~~~~~q~D~~~~~d~g~i~~~~~~~QEa~d~t~~Af~lAE~~~-~ 158 (390)
T PRK08366 83 GLALMHEMLHWAAGARLPIVMVDVNRAMAP-PW--SVWDDQTDSLAQRDTGWMQFYAENNQEVYDGVLMAFKVAETVN-L 158 (390)
T ss_pred cHHHHhhHHHHHHhcCCCEEEEEeccCCCC-CC--CCcchhhHHHHHhhcCEEEEeCCCHHHHHHHHHHHHHHHHHHC-C
Confidence 999999999999999999999988876441 11 11223444221 1233322 24678889999999999999654 6
Q ss_pred eEEEEec
Q 048725 240 PVLIDVP 246 (661)
Q Consensus 240 PV~I~iP 246 (661)
||.+..-
T Consensus 159 PViv~~D 165 (390)
T PRK08366 159 PAMVVES 165 (390)
T ss_pred CEEEEec
Confidence 8888774
No 137
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=98.61 E-value=8.5e-07 Score=96.10 Aligned_cols=156 Identities=15% Similarity=0.081 Sum_probs=118.8
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcC-----CCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccch
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRS-----NNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGP 161 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~-----~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGp 161 (661)
-++|.+++++...+.|++.+++||+++..++.+.|.+. -+.+++..-+|.+|..||.|.+.+..| ++..||||
T Consensus 6 ~~~GNeAvA~aa~~Ag~~v~a~YPITPsTei~e~la~~~~~g~~~~~~v~~EsE~aA~~~~~GAs~aGaR--a~TaTS~~ 83 (394)
T PRK08367 6 VMKANEAAAWAAKLAKPKVIAAFPITPSTLVPEKISEFVANGELDAEFIKVESEHSAISACVGASAAGVR--TFTATASQ 83 (394)
T ss_pred eccHHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhcCCcCeEEEEeCCHHHHHHHHHHHHhhCCC--eEeeeccc
Confidence 37899999999999999999999999999999999874 147788888999999999998877776 34469999
Q ss_pred hhHHHHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHh--hccccccc-ccCCcCcHHHHHHHHHHHhhcCC-
Q 048725 162 GATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVT--RSITKHNY-LVLDVDDIPRIVREAFLLATSGR- 237 (661)
Q Consensus 162 G~~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~--~~itk~~~-~v~~~~~i~~~i~~A~~~a~s~~- 237 (661)
|+.=+.-++.-|...++|+++..+++.... ... -..||.++. +. +.|.. ...+++++-+....||+.|...+
T Consensus 84 Gl~lm~E~l~~aag~~lP~V~vv~~R~~~~-p~~--i~~d~~D~~~~rd-~g~~~~~a~~~QEa~D~~~~Af~lAE~~~~ 159 (394)
T PRK08367 84 GLALMHEVLFIAAGMRLPIVMAIGNRALSA-PIN--IWNDWQDTISQRD-TGWMQFYAENNQEALDLILIAFKVAEDERV 159 (394)
T ss_pred hHHHHhhHHHHHHHccCCEEEEECCCCCCC-CCC--cCcchHHHHhccc-cCeEEEeCCCHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999887765332 111 111222221 11 11221 23578888899999999998543
Q ss_pred CceEEEEeccc
Q 048725 238 PGPVLIDVPKD 248 (661)
Q Consensus 238 ~GPV~I~iP~d 248 (661)
.-||.+..-.-
T Consensus 160 ~~Pviv~~Dgf 170 (394)
T PRK08367 160 LLPAMVGFDAF 170 (394)
T ss_pred CCCEEEEechh
Confidence 25888877653
No 138
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=98.61 E-value=5.9e-07 Score=98.07 Aligned_cols=158 Identities=20% Similarity=0.113 Sum_probs=121.9
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCC-----CCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccch
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSN-----NIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGP 161 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~-----~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGp 161 (661)
-++|.++++....+.|++.+++||+++..++.+.|.+.- +-.++..-+|.+|..||.|.+.+..| + +..||||
T Consensus 12 ~~~GNeAiA~ga~~Ag~~~~a~YPITPsTeI~e~la~~~~~g~~~~~~vq~E~E~~A~~~~~GAs~aGaR-a-~TaTS~~ 89 (407)
T PRK09622 12 VWDGNTAASNALRQAQIDVVAAYPITPSTPIVQNYGSFKANGYVDGEFVMVESEHAAMSACVGAAAAGGR-V-ATATSSQ 89 (407)
T ss_pred ecchHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhCCCcCcEEEeeccHHHHHHHHHHHHhhCcC-E-EeecCcc
Confidence 478999999999999999999999999999999997641 24688899999999999998866655 4 4479999
Q ss_pred hhHHHHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhc-ccccc-cccCCcCcHHHHHHHHHHHhhcC-CC
Q 048725 162 GATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRS-ITKHN-YLVLDVDDIPRIVREAFLLATSG-RP 238 (661)
Q Consensus 162 G~~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~-itk~~-~~v~~~~~i~~~i~~A~~~a~s~-~~ 238 (661)
|+.=+.-++.-|...++|+|++..++.-.. ...-..||.+++.. .+.|- +...+++++-++..+||+.|..- -.
T Consensus 90 Gl~lm~E~l~~aa~~~~P~V~~~~~R~~~~---~~~i~~d~~D~~~~r~~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~~ 166 (407)
T PRK09622 90 GLALMVEVLYQASGMRLPIVLNLVNRALAA---PLNVNGDHSDMYLSRDSGWISLCTCNPQEAYDFTLMAFKIAEDQKVR 166 (407)
T ss_pred hHHHHhhHHHHHHHhhCCEEEEEeccccCC---CcCCCchHHHHHHHhcCCeEEEeCCCHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999888876321 11112244443321 22222 23567888999999999999864 13
Q ss_pred ceEEEEeccch
Q 048725 239 GPVLIDVPKDI 249 (661)
Q Consensus 239 GPV~I~iP~dv 249 (661)
-||.+..-.-+
T Consensus 167 ~Pviv~~Dg~~ 177 (407)
T PRK09622 167 LPVIVNQDGFL 177 (407)
T ss_pred CCEEEEechhh
Confidence 79988886654
No 139
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=98.58 E-value=4.3e-07 Score=87.79 Aligned_cols=114 Identities=21% Similarity=0.182 Sum_probs=85.1
Q ss_pred CcccchHHHHHHhhhh----CCCCcEEEEECCccccc--ChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhccccc
Q 048725 502 GAMGFGLPAAIGAAVA----NPDAIIVDIDGDGSFIM--NVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRA 575 (661)
Q Consensus 502 g~mG~~lpaAiGaala----~p~~~vv~i~GDGsf~~--~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~ 575 (661)
|++|.|++.|+|+|++ ..+.+|.+++|||-+.- ++..+.+|++|+|+-++.+++-+...+- .
T Consensus 119 GSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG~~WEAam~Aah~~L~NLiaivD~N~~Qld---------G--- 186 (243)
T COG3959 119 GSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMTAAHYKLDNLIAIVDRNKLQLD---------G--- 186 (243)
T ss_pred CcccccchHHHHHHHHHhhcCCCceEEEEecCcccccccHHHHHHHHHHhccCcEEEEEecCCcccC---------C---
Confidence 6788877777776665 45678999999999976 4888999999999977766665543221 0
Q ss_pred ccccCCCCCcccCCccHHHHHhHcCCCEeeeC--CHHHHHHHHHHHHhC-CCcEEEEEEeC
Q 048725 576 HTYLGDPSRESEIFPNMLKFAEACGIPGAQVT--RKADLRAAIQTMLDT-PGPYLLDVIFP 633 (661)
Q Consensus 576 ~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~~-~gp~lIeV~~~ 633 (661)
.+.--.+ .-|+.+.-+|||++..+|+ +.+++.++|+++... ++|.+|-+.+.
T Consensus 187 ~t~~i~~------~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~~~rP~~IIa~Tv 241 (243)
T COG3959 187 ETEEIMP------KEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGSKGRPTVIIAKTV 241 (243)
T ss_pred chhhccC------cchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhccCCCCeEEEEecc
Confidence 0000011 1378899999999999996 789999999998874 49999987764
No 140
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=98.57 E-value=3.3e-07 Score=97.17 Aligned_cols=120 Identities=19% Similarity=0.164 Sum_probs=92.4
Q ss_pred CcccchHHHHHHhhhhC-----------CCCcEEEEECCccccc--ChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHH
Q 048725 502 GAMGFGLPAAIGAAVAN-----------PDAIIVDIDGDGSFIM--NVQELATIKVEKLPIKILLLNNQHLGMVMQWEDR 568 (661)
Q Consensus 502 g~mG~~lpaAiGaala~-----------p~~~vv~i~GDGsf~~--~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~ 568 (661)
|++|.|++.|+|+|++. .+.+|+|++|||.++- .+..+..|.+++|+-+++|+|+++..+-
T Consensus 118 GSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qid------ 191 (386)
T cd02017 118 VSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRLD------ 191 (386)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCCccC------
Confidence 79999999999998863 2578999999999986 4677889999999877778887766542
Q ss_pred hhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeC-----------------------------------------
Q 048725 569 FYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVT----------------------------------------- 607 (661)
Q Consensus 569 ~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~----------------------------------------- 607 (661)
.. ... .+. ..-|+.+.-++||++...|+
T Consensus 192 ---G~-t~~-v~~------~~e~l~~kf~AfGW~vi~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r 260 (386)
T cd02017 192 ---GP-VRG-NGK------IIQELEGIFRGAGWNVIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVR 260 (386)
T ss_pred ---Cc-ccc-ccc------CchhHHHHHHhcCCEEEEEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHH
Confidence 10 000 000 01389999999999999984
Q ss_pred ------------------------------CHHHHHHHHHHHHh-CCCcEEEEEEeCCCCCc
Q 048725 608 ------------------------------RKADLRAAIQTMLD-TPGPYLLDVIFPHQEHV 638 (661)
Q Consensus 608 ------------------------------~~~el~~al~~a~~-~~gp~lIeV~~~~~~~~ 638 (661)
+.++|.+|++++.. .++|++|-+.|-....+
T Consensus 261 ~~l~~~~~~~~~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~~~~kPt~Iia~TikG~G~ 322 (386)
T cd02017 261 EHFFGKYPELKALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVEHKGKPTVILAKTIKGYGL 322 (386)
T ss_pred HHhccccHHHHHHhhcccHHhhhhhccCCCCHHHHHHHHHHHHhCCCCCeEEEEeCeecCCC
Confidence 78999999998875 46899999999876643
No 141
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=98.56 E-value=2.2e-07 Score=93.26 Aligned_cols=151 Identities=22% Similarity=0.163 Sum_probs=102.7
Q ss_pred HHHHCCCCEEEeccCCCcHHHHHHHHcC---CCC--eEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHH
Q 048725 97 ALERQGVTDVFAYPGGASMEIHQALTRS---NNI--RNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSGLA 171 (661)
Q Consensus 97 ~L~~~GV~~vFg~PG~~~~~l~~aL~~~---~~i--~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~gl~ 171 (661)
...+.|++.+++||+++..++.+.+.+. .++ +++.+-+|.+|..||.|.+.+..| .+ ..|||||+.-+.-+|.
T Consensus 2 ga~~ag~~~~~~YPiTPstei~e~~~~~~~~~~~~~~~~~~E~E~~A~~~~~GAs~aG~r-a~-t~ts~~Gl~lm~e~l~ 79 (230)
T PF01855_consen 2 GAIEAGCDFAAAYPITPSTEIMEYLAKYIADGGGDAKVVQAESEHAAMEAAIGASAAGAR-AM-TATSGPGLNLMAEPLY 79 (230)
T ss_dssp HHHHHT-SEEEE--BTTTCHHHHHHHHHHHCCTBB-EEEE-SSHHHHHHHHHHHHHTT---EE-EEEECCHHHHHCCCHH
T ss_pred HHHhcCCceEEEeCCCCccHHHHHHHHHHHHcCCceEEEEecchHHHHHHHHHHHhcCCc-eE-EeecCCcccccHhHHH
Confidence 4567899999999999999999997653 234 999999999999999998866554 44 3799999999999999
Q ss_pred HhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccchh
Q 048725 172 DALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQ 250 (661)
Q Consensus 172 ~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~dv~ 250 (661)
.+...++|++++..++.-..-|....++-+..-..+..-.-.+...++.++-+....||+.|..-+ -||.+....-+.
T Consensus 80 ~a~~~~~P~V~~~~~R~g~~~g~~~~~~q~D~~~~~d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~-~PViv~~Dg~~~ 157 (230)
T PF01855_consen 80 WAAGTELPIVIVVVQRAGPSPGLSTQPEQDDLMAARDSGWIVLAPSSPQEAYDMTLIAFNLAEKYQ-TPVIVLFDGFLC 157 (230)
T ss_dssp HHHHTT--EEEEEEEB---SSSB--SB-SHHHHHTTTSS-EEEE--SHHHHHHHHHHHHHHHHHHT-SEEEEEEECCCC
T ss_pred HHHHcCCCEEEEEEECCCCCCCCcCcCChhHHHHHHhcCeEEEeCCCHHHHHHHHHHHHHHHHHHC-CCEEEEechhhh
Confidence 999999999999998764433322222222122222222222345678889999999999999855 799988865554
No 142
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=98.53 E-value=8.7e-07 Score=100.84 Aligned_cols=137 Identities=18% Similarity=0.160 Sum_probs=89.1
Q ss_pred CCcccchHHHHHHhhhhC----CCCcEEEEECCccccc--ChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccc
Q 048725 501 LGAMGFGLPAAIGAAVAN----PDAIIVDIDGDGSFIM--NVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANR 574 (661)
Q Consensus 501 ~g~mG~~lpaAiGaala~----p~~~vv~i~GDGsf~~--~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~ 574 (661)
.|++|.||++|+|+|+|+ .+.+|+|++|||++.- .+..+..|.+.+-++++ |+|+++..+....|..-...+-
T Consensus 176 tGslg~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~nliv-IlddN~~~~~~~~q~~g~~~~v 254 (641)
T PLN02234 176 TGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSNMIV-ILNDNKQVSLPTANLDGPTQPV 254 (641)
T ss_pred CCchHHHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHHHHHHHHHhhhCCCEEE-EEECCCCCcccccccCCCCCCc
Confidence 479999999999999885 3567999999999975 57788888877755555 5555544221100000000000
Q ss_pred --cccc---c-CCCCCcccCCccHHHHHhHcCCCEe-ee--CCHHHHHHHHHHHHhC--CCcEEEEEEeCCCCCcCCc
Q 048725 575 --AHTY---L-GDPSRESEIFPNMLKFAEACGIPGA-QV--TRKADLRAAIQTMLDT--PGPYLLDVIFPHQEHVLPM 641 (661)
Q Consensus 575 --~~~~---~-g~p~~~~~~~~d~~~~A~a~G~~~~-~v--~~~~el~~al~~a~~~--~gp~lIeV~~~~~~~~~p~ 641 (661)
...+ + .++.. ..-+....-++||+++. .| ++.++|.++|+++... ++|.+|.+.|.+...+.++
T Consensus 255 ~~l~~~l~~l~~~~~~---~~~~~~~~fe~fG~~~~g~vDGHd~~~l~~al~~~k~~~~~~P~vI~~~T~KGkGv~~~ 329 (641)
T PLN02234 255 GALSCALSRLQSNCGM---IRETSSTLFEELGFHYVGPVDGHNIDDLVSILETLKSTKTIGPVLIHVVTEKGRGYPYA 329 (641)
T ss_pred ccHHHHHHHhhccccc---ccCCHHHHHHHcCCEEEeeECCCCHHHHHHHHHHHHhcCCCCCEEEEEEEecCCCcchh
Confidence 0000 0 00000 00145678899999999 88 5999999999987653 5899999999987765543
No 143
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=98.50 E-value=6.5e-07 Score=98.82 Aligned_cols=114 Identities=25% Similarity=0.285 Sum_probs=91.5
Q ss_pred CcccchHHHHHHhhhhC---------C-----CCcEEEEECCcccccC--hHHHHHHHHcCCCeEEEEEeCCcchhHHHH
Q 048725 502 GAMGFGLPAAIGAAVAN---------P-----DAIIVDIDGDGSFIMN--VQELATIKVEKLPIKILLLNNQHLGMVMQW 565 (661)
Q Consensus 502 g~mG~~lpaAiGaala~---------p-----~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~ 565 (661)
|.+|.|++.|+|+|+|. | +..+.|++|||+++-. -.....|..++|.=+|++.+++...|-
T Consensus 116 GPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N~IsiD--- 192 (663)
T COG0021 116 GPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDISID--- 192 (663)
T ss_pred CccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhcccHHHHHHHHhhcCCCcEEEEEeCCCceec---
Confidence 89999999999999973 2 3589999999999975 334678899999999999998876652
Q ss_pred HHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeC---CHHHHHHHHHHHHh-CCCcEEEEEEeCC
Q 048725 566 EDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVT---RKADLRAAIQTMLD-TPGPYLLDVIFPH 634 (661)
Q Consensus 566 ~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~---~~~el~~al~~a~~-~~gp~lIeV~~~~ 634 (661)
.. ....+ .-|..+-.+|||+++.++. +.+++.+|+++|.. .++|++|+|+|-=
T Consensus 193 ------G~-~~~~f---------~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~~~dkPtlI~~kTiI 249 (663)
T COG0021 193 ------GD-TSLSF---------TEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKASTDKPTLIIVKTII 249 (663)
T ss_pred ------cC-ccccc---------chhHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCCeEEEEEeee
Confidence 11 11111 1489999999999999664 59999999999998 6799999999953
No 144
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=98.49 E-value=1.4e-06 Score=100.16 Aligned_cols=141 Identities=17% Similarity=0.173 Sum_probs=90.2
Q ss_pred CCcccchHHHHHHhhhhC----CCCcEEEEECCccccc--ChHHHHHHHHcCCCeEEEEEeCCcch--------------
Q 048725 501 LGAMGFGLPAAIGAAVAN----PDAIIVDIDGDGSFIM--NVQELATIKVEKLPIKILLLNNQHLG-------------- 560 (661)
Q Consensus 501 ~g~mG~~lpaAiGaala~----p~~~vv~i~GDGsf~~--~~~eL~ta~~~~lpv~ivV~NN~g~g-------------- 560 (661)
.|+.|.+++.|+|+|+|. .++.||+++|||++.- .+..|..|..+++|+++||-||+.-.
T Consensus 143 ~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~~~Ealn~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~vg 222 (677)
T PLN02582 143 TGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVG 222 (677)
T ss_pred cchhhhhHHHHHHHHHHHHhcCCCCEEEEEecccccchhhHHHHHHHHHhhCcCEEEEEECCCCccccccccCCCCCCcc
Confidence 378999999999998874 4668999999999975 47778899999999777777775311
Q ss_pred -hHHHHH----HHhhccc--cccccc-CCCCCc------------ccCCccHHHHHhHcCCCEe-ee--CCHHHHHHHHH
Q 048725 561 -MVMQWE----DRFYKAN--RAHTYL-GDPSRE------------SEIFPNMLKFAEACGIPGA-QV--TRKADLRAAIQ 617 (661)
Q Consensus 561 -~~~~~~----~~~~~~~--~~~~~~-g~p~~~------------~~~~~d~~~~A~a~G~~~~-~v--~~~~el~~al~ 617 (661)
+-+.+. ...|..- .....+ ..|... ....+.=..+-++||+.|. .| ++.++|.++|+
T Consensus 223 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~L~~al~ 302 (677)
T PLN02582 223 ALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILR 302 (677)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHHHHHHHHHHhhhccCccccchHHHcCCeEEeeeCCCCHHHHHHHHH
Confidence 101110 0011000 000000 000000 0000000035789999988 55 69999999999
Q ss_pred HHHhC--CCcEEEEEEeCCCCCcCCc
Q 048725 618 TMLDT--PGPYLLDVIFPHQEHVLPM 641 (661)
Q Consensus 618 ~a~~~--~gp~lIeV~~~~~~~~~p~ 641 (661)
++.+. ++|.||+|+|.+...+.|.
T Consensus 303 ~~k~~~~~~P~vihv~T~KGkG~~~a 328 (677)
T PLN02582 303 EVKSTKTTGPVLIHVVTEKGRGYPYA 328 (677)
T ss_pred HHHhcCCCCCEEEEEEecCCCCCChh
Confidence 98875 5999999999988766553
No 145
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=98.45 E-value=4.3e-07 Score=90.87 Aligned_cols=131 Identities=25% Similarity=0.331 Sum_probs=74.9
Q ss_pred CCCcccchHHHHHHhhhhC----CCCcEEEEECCcccc--cChHHHHHHHHcCCCeEEEEEeCCcchhHHH-------H-
Q 048725 500 GLGAMGFGLPAAIGAAVAN----PDAIIVDIDGDGSFI--MNVQELATIKVEKLPIKILLLNNQHLGMVMQ-------W- 565 (661)
Q Consensus 500 ~~g~mG~~lpaAiGaala~----p~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~-------~- 565 (661)
+.|.-|.++++|+|.|.|+ .++.||+++|||++. |.+..|..+...+-+++||+-+|+ +.+-.. +
T Consensus 109 ~~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIGDGalt~Gma~EALN~~g~~~~~liVILNDN~-mSIs~nvGals~~L~ 187 (270)
T PF13292_consen 109 GAGHSSTSISAALGMAVARDLKGEDRKVVAVIGDGALTGGMAFEALNNAGHLKSNLIVILNDNE-MSISPNVGALSKYLS 187 (270)
T ss_dssp --SSSS-HHHHHHHHHHHHHHHTS---EEEEEETTGGGSHHHHHHHHHHHHHT-SEEEEEEE-S-BSSSB--SSHCCC--
T ss_pred cCCccHhHHHHHHHHHHHHHhcCCCCcEEEEECCcchhHHHHHHHHHHHHhcCCCEEEEEeCCC-cccCCCcchHHHHHH
Confidence 3467777999999999986 578899999999985 678889999998888776665554 433211 1
Q ss_pred ---HHHhhccc--ccccccCC--CCCc-----cc-C-CccHHHHHhHcCCCEeee---CCHHHHHHHHHHHHhCCCcEEE
Q 048725 566 ---EDRFYKAN--RAHTYLGD--PSRE-----SE-I-FPNMLKFAEACGIPGAQV---TRKADLRAAIQTMLDTPGPYLL 628 (661)
Q Consensus 566 ---~~~~~~~~--~~~~~~g~--p~~~-----~~-~-~~d~~~~A~a~G~~~~~v---~~~~el~~al~~a~~~~gp~lI 628 (661)
..+.|..- .....+.. +... .+ . .. ...+-+.+|+.|.-+ ++.++|.++|+++.+.+||+||
T Consensus 188 ~l~~~~~y~~~k~~~~~~l~~~~~~~~~~~r~~~s~K~~-~~~lFe~LG~~Y~GPiDGHdl~~Li~~l~~~K~~~gPvll 266 (270)
T PF13292_consen 188 KLRSSPTYNKLKEDVKSLLKKIPPIEEFAKRIKESLKGF-SPNLFEELGFDYIGPIDGHDLEELIEVLENAKDIDGPVLL 266 (270)
T ss_dssp ------------------------------------------CCCHHCT-EEEEEEETT-HHHHHHHHHHHCCSSSEEEE
T ss_pred hccchhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhh-hHHHHHHcCCeEEeccCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 11112110 00000000 0000 00 0 00 114567789999855 6999999999999999999999
Q ss_pred EEEe
Q 048725 629 DVIF 632 (661)
Q Consensus 629 eV~~ 632 (661)
+|+|
T Consensus 267 HV~T 270 (270)
T PF13292_consen 267 HVIT 270 (270)
T ss_dssp EEE-
T ss_pred EEeC
Confidence 9986
No 146
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=98.41 E-value=1.7e-06 Score=105.49 Aligned_cols=151 Identities=14% Similarity=0.077 Sum_probs=103.3
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHH---cCCC-------CeEEccCChhHHHHHHHHHHHHhCCcEEEE
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALT---RSNN-------IRNVLPRHEQGGIFAAEGYARSSGKPGICI 156 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~---~~~~-------i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~ 156 (661)
.|+|.++++....+ |++.+|+||=+++.++.+.+. .... .+++..-+|.+|+.|+.|.+. +|.... .
T Consensus 3 ~~~GNeAvA~~A~~-~~~~~~~YPITPss~i~e~l~~~~~~g~~n~~G~~~~~vq~EsE~~A~~av~GA~~-aGara~-T 79 (1165)
T TIGR02176 3 TMDGNTAAAHVAYA-FSEVAAIYPITPSSTMGEYVDDWAAQGRKNIFGQTVKVVEMQSEAGAAGAVHGALQ-TGALTT-T 79 (1165)
T ss_pred eeeHHHHHHHHHHH-hCCEEEEECCCCCcHHHHHHHHHHHhCCcccCCCCceEEEccchHHHHHHHHhHhh-cCCCEE-E
Confidence 37899999999988 999999999888888888773 3211 279999999999999999665 454444 4
Q ss_pred EccchhhHHHHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhh-ccccccc-ccCCcCcHHHHHHHHHHHhh
Q 048725 157 ATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTR-SITKHNY-LVLDVDDIPRIVREAFLLAT 234 (661)
Q Consensus 157 ~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~-~itk~~~-~v~~~~~i~~~i~~A~~~a~ 234 (661)
.|||+|++-+...+..+.-.++|+|+...++.....+..- .-|+.++.. .-+-|.. ...++.++-++.-.|++.|.
T Consensus 80 ~TSs~GL~LM~e~l~~~ag~~~P~Vi~va~R~~~~~~~~i--~~dh~Dv~~~R~~G~ivl~s~svQEa~D~al~A~~lAe 157 (1165)
T TIGR02176 80 FTASQGLLLMIPNMYKIAGELLPCVFHVSARAIAAHALSI--FGDHQDVMAARQTGFAMLASSSVQEVMDLALVAHLATI 157 (1165)
T ss_pred ecChhHHHHHHHHHHHHHhccCCEEEEEecCCCCCCCCcc--CCCchHHHHhhcCCeEEEeCCCHHHHHHHHHHHHHHHH
Confidence 6999999999999988777799999999988543211110 112222211 1122221 12355666666667777776
Q ss_pred cCCCceEEE
Q 048725 235 SGRPGPVLI 243 (661)
Q Consensus 235 s~~~GPV~I 243 (661)
..+ -||.+
T Consensus 158 ~~~-~Pvi~ 165 (1165)
T TIGR02176 158 EAR-VPFMH 165 (1165)
T ss_pred hcC-CCEEE
Confidence 544 35543
No 147
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=98.40 E-value=1.1e-06 Score=87.19 Aligned_cols=102 Identities=20% Similarity=0.228 Sum_probs=69.4
Q ss_pred CcccchHHHHHHhhhhCCCCcEEEEECCcccccC-hHHHHHH----HHcCCCeEEEEEeCCcchhHHHHHHHhhcccccc
Q 048725 502 GAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMN-VQELATI----KVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAH 576 (661)
Q Consensus 502 g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~-~~eL~ta----~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~ 576 (661)
|.+|++++.|+|+++.+++..|+|++|||.+.-. +...|.+ ..+++.-++.|++|++|.|-. .
T Consensus 62 G~LG~gLs~A~G~a~d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~---------p--- 129 (227)
T cd02011 62 GELGYSLSHAYGAVFDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISN---------P--- 129 (227)
T ss_pred cchhhHHHHHHHhhhcCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccC---------C---
Confidence 7999999999999999999999999999996542 2333432 334556556666677788731 0
Q ss_pred cccCCCCCcccCCccHHHHHhHcCCCEeeeC--CHHHHHHHHHHHH
Q 048725 577 TYLGDPSRESEIFPNMLKFAEACGIPGAQVT--RKADLRAAIQTML 620 (661)
Q Consensus 577 ~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~ 620 (661)
+.+.. ....++.+.+++||++.+.|+ +++++.+++++++
T Consensus 130 t~~~~-----~~~e~l~~~~~~yG~~~~~VDG~D~~av~~~~a~a~ 170 (227)
T cd02011 130 TILAR-----ISHEELEALFRGYGYEPYFVEGDDPETMHQAMAATL 170 (227)
T ss_pred ccccc-----cCchhHHHHHHhCCCceEEECCCCHHHHHHHHHHHH
Confidence 11110 001489999999999999996 5555554444433
No 148
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=98.39 E-value=1.1e-06 Score=103.61 Aligned_cols=116 Identities=20% Similarity=0.222 Sum_probs=84.6
Q ss_pred CCcccchHHHHHHhhhhC----CC------CcEEEEECCccc-cc-ChHH-HHHHHHcCCC---eEEEEEeCCcchhHHH
Q 048725 501 LGAMGFGLPAAIGAAVAN----PD------AIIVDIDGDGSF-IM-NVQE-LATIKVEKLP---IKILLLNNQHLGMVMQ 564 (661)
Q Consensus 501 ~g~mG~~lpaAiGaala~----p~------~~vv~i~GDGsf-~~-~~~e-L~ta~~~~lp---v~ivV~NN~g~g~~~~ 564 (661)
.+.+|...|.|.|+++|. .+ ..+|++.|||+| .- .+.| |..|.-+++| +++||.||+ ||+...
T Consensus 313 pShleav~Pva~G~A~A~q~~~~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq-~g~tT~ 391 (924)
T PRK09404 313 PSHLEIVNPVVEGSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQ-IGFTTS 391 (924)
T ss_pred ccccccccCeehhHHHHHHHhcCCcccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCC-EEEeeC
Confidence 356788888888888874 34 467999999998 33 3444 6667788898 888888887 887522
Q ss_pred HHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeC--CHHHHHHHHHHHHh----CCCcEEEEEEeCCC
Q 048725 565 WEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVT--RKADLRAAIQTMLD----TPGPYLLDVIFPHQ 635 (661)
Q Consensus 565 ~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIeV~~~~~ 635 (661)
.... .. ..+..++|++||+++++|+ +++.+..+.+.|++ -+||+|||+++-+-
T Consensus 392 ~~~~----------~s--------~~~~sd~Ak~~giP~~~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR~ 450 (924)
T PRK09404 392 PPDD----------RS--------TPYCTDVAKMVQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYRR 450 (924)
T ss_pred HHHh----------cc--------chhHHHHHeecCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEecC
Confidence 1110 00 1367889999999999995 77777777776664 57999999999754
No 149
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=98.38 E-value=2e-06 Score=94.55 Aligned_cols=138 Identities=22% Similarity=0.295 Sum_probs=87.0
Q ss_pred CcccchHHHHHHhhhhC----CCCcEEEEECCccc--ccChHHHHHHH-HcCCCeEEEEEeCCcchh-------HHHHHH
Q 048725 502 GAMGFGLPAAIGAAVAN----PDAIIVDIDGDGSF--IMNVQELATIK-VEKLPIKILLLNNQHLGM-------VMQWED 567 (661)
Q Consensus 502 g~mG~~lpaAiGaala~----p~~~vv~i~GDGsf--~~~~~eL~ta~-~~~lpv~ivV~NN~g~g~-------~~~~~~ 567 (661)
|.-+.+|++|+|+|.|+ .++.||+++|||++ .|.+..|.++. ..+-| .+||+|++.+.| -+.+.+
T Consensus 115 GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~GmA~EALN~ag~~~~~~-~iVILNDNeMSIs~nvGal~~~L~~ 193 (627)
T COG1154 115 GHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGMAFEALNNAGADLKSN-LIVILNDNEMSISPNVGALSKHLAR 193 (627)
T ss_pred CchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchHHHHHHhhhhhccCCC-EEEEEeCCCcccCCCccHHHHHHHH
Confidence 56677899999998773 56889999999987 47788888887 33344 455566655543 222211
Q ss_pred H----hhccc--ccccc---cCCCCCc------cc--CCccHHHHHhHcCCCEeee---CCHHHHHHHHHHHHhCCCcEE
Q 048725 568 R----FYKAN--RAHTY---LGDPSRE------SE--IFPNMLKFAEACGIPGAQV---TRKADLRAAIQTMLDTPGPYL 627 (661)
Q Consensus 568 ~----~~~~~--~~~~~---~g~p~~~------~~--~~~d~~~~A~a~G~~~~~v---~~~~el~~al~~a~~~~gp~l 627 (661)
. .|..- ..... .+.+... +. ....-..+-+.+|++|+-. ++.++|..+|+.+.+.+||.|
T Consensus 194 l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l~~~~~lFeelGf~YiGPiDGHni~~Li~~Lk~~kd~~gPvl 273 (627)
T COG1154 194 LRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGLLVPGTLFEELGFNYIGPIDGHNLEELIPTLKNAKDLKGPVL 273 (627)
T ss_pred HhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhcccCchhhHHHhCCeeECCcCCCCHHHHHHHHHHHhcCCCCEE
Confidence 1 11000 00000 1110000 00 0011124778899999854 699999999999999999999
Q ss_pred EEEEeCCCCCcCC
Q 048725 628 LDVIFPHQEHVLP 640 (661)
Q Consensus 628 IeV~~~~~~~~~p 640 (661)
|+|+|.+.....|
T Consensus 274 lHv~T~KGKGY~p 286 (627)
T COG1154 274 LHVVTKKGKGYKP 286 (627)
T ss_pred EEEEecCCCCCCh
Confidence 9999988776544
No 150
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=98.31 E-value=1.8e-06 Score=87.70 Aligned_cols=117 Identities=28% Similarity=0.371 Sum_probs=81.6
Q ss_pred CCCCcccchHHHHHHhhhhC----CCCcEEEEECCcccccC--hHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcc
Q 048725 499 GGLGAMGFGLPAAIGAAVAN----PDAIIVDIDGDGSFIMN--VQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKA 572 (661)
Q Consensus 499 ~~~g~mG~~lpaAiGaala~----p~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~ 572 (661)
+|.|..|..+|.+.|+++|. .+..++++-|||+.... +..+..|.-++||+++|+-||. |||=.....
T Consensus 162 GGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvCENN~-yGMGTs~~R----- 235 (394)
T KOG0225|consen 162 GGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFVCENNH-YGMGTSAER----- 235 (394)
T ss_pred CccceeccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhHHHHhCCCEEEEEccCC-CccCcchhh-----
Confidence 56677888899888888873 35678999999999875 6668888889999999988886 988311110
Q ss_pred cccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHH--HHHHHHHH----hCCCcEEEEEEeCCCC
Q 048725 573 NRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADL--RAAIQTML----DTPGPYLLDVIFPHQE 636 (661)
Q Consensus 573 ~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el--~~al~~a~----~~~gp~lIeV~~~~~~ 636 (661)
. .. .+||-+-. .| +++.+|+..+-| ++|.+.|. +.+||.|+|.-|-+--
T Consensus 236 --a---sa--------~teyykRG-~y-iPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy~ 290 (394)
T KOG0225|consen 236 --A---SA--------STEYYKRG-DY-IPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYRYH 290 (394)
T ss_pred --h---hc--------ChHHHhcc-CC-CCceEECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeeeec
Confidence 0 01 14554444 22 788888765543 55555444 3589999999996543
No 151
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=98.30 E-value=3e-06 Score=98.84 Aligned_cols=120 Identities=18% Similarity=0.146 Sum_probs=92.3
Q ss_pred CCcccchHHHHHHhhhhCC-----------CCcEEEEECCccccc--ChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHH
Q 048725 501 LGAMGFGLPAAIGAAVANP-----------DAIIVDIDGDGSFIM--NVQELATIKVEKLPIKILLLNNQHLGMVMQWED 567 (661)
Q Consensus 501 ~g~mG~~lpaAiGaala~p-----------~~~vv~i~GDGsf~~--~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~ 567 (661)
.|+||.|++.|+|.|++.. +.+|+|++|||.+.- ++..+..|.+++|+-+++|+|+|...+-
T Consensus 188 TGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~qlD----- 262 (889)
T TIGR03186 188 TGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLD----- 262 (889)
T ss_pred CCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccC-----
Confidence 3799999999999998521 578999999999987 4777899999999988888888875431
Q ss_pred HhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeC----------------------------------------
Q 048725 568 RFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVT---------------------------------------- 607 (661)
Q Consensus 568 ~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~---------------------------------------- 607 (661)
.. +. ++ ....-++++.-++||++..+|.
T Consensus 263 ----G~---t~-~~----~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~ 330 (889)
T TIGR03186 263 ----GP---VR-GN----GRIIDELESQFAGAGWNVIKVLWGSDWDALFARDATGALARAFAHTVDGQFQTFSANDGAYN 330 (889)
T ss_pred ----Cc---cc-cc----cccchHHHHHHHhCCCEEEEEeecCchHHhhccccchHHHHHHHhcccHHHHHHhhcchHHH
Confidence 00 00 00 0001378999999999998872
Q ss_pred -------------------------------CHHHHHHHHHHHHhC-CCcEEEEEEeCCCCC
Q 048725 608 -------------------------------RKADLRAAIQTMLDT-PGPYLLDVIFPHQEH 637 (661)
Q Consensus 608 -------------------------------~~~el~~al~~a~~~-~gp~lIeV~~~~~~~ 637 (661)
+++++.+|+++|.+. ++|++|.+.|-....
T Consensus 331 R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~~~~~PTvIla~TvkG~G 392 (889)
T TIGR03186 331 RARFFGQDPALAALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVRHEGRPTVILAKTMKGFG 392 (889)
T ss_pred HHHhcCccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhCCCCCEEEEEEeeecCC
Confidence 788899999988874 689999999976543
No 152
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=98.29 E-value=3.2e-06 Score=99.20 Aligned_cols=118 Identities=20% Similarity=0.235 Sum_probs=85.3
Q ss_pred CCCCcccchHHHHHHhhhhC----C------CCcEEEEECCccc-cc-ChHH-HHHHHHcCCCe---EEEEEeCCcchhH
Q 048725 499 GGLGAMGFGLPAAIGAAVAN----P------DAIIVDIDGDGSF-IM-NVQE-LATIKVEKLPI---KILLLNNQHLGMV 562 (661)
Q Consensus 499 ~~~g~mG~~lpaAiGaala~----p------~~~vv~i~GDGsf-~~-~~~e-L~ta~~~~lpv---~ivV~NN~g~g~~ 562 (661)
.+-+.++...|.+.|.+.|. . +..+|++.|||+| .- .+.| |..|.-+++|+ ++||.||+ ||+.
T Consensus 312 ~npSHLeav~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNq-yg~t 390 (929)
T TIGR00239 312 FNPSHLEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQ-IGFT 390 (929)
T ss_pred CCCcccccccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCC-EEEE
Confidence 44467898899999988874 2 3567999999998 33 3444 66688889997 77777765 8885
Q ss_pred HHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeC--CHHHHHHHHHHHHh----CCCcEEEEEEeCCC
Q 048725 563 MQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVT--RKADLRAAIQTMLD----TPGPYLLDVIFPHQ 635 (661)
Q Consensus 563 ~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIeV~~~~~ 635 (661)
....+. .. .....+.|++||+++++|+ +++.+..+++.|++ -+||+|||+++-+-
T Consensus 391 T~~~~~----------~s--------~~~~sd~Ak~ygiP~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~ 451 (929)
T TIGR00239 391 TNPLDA----------RS--------TPYCSDLAKMIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRR 451 (929)
T ss_pred EcHHHh----------cC--------ccCHHHHheecCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccC
Confidence 311100 00 1357789999999999995 77777777776664 57999999999653
No 153
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=98.27 E-value=2.3e-06 Score=97.66 Aligned_cols=135 Identities=16% Similarity=0.214 Sum_probs=85.8
Q ss_pred CCcccchHHHHHHhhhhC----CCCcEEEEECCcccc--cChHHHHHHHHcCCCeEEEEEeCCcchhHHH----------
Q 048725 501 LGAMGFGLPAAIGAAVAN----PDAIIVDIDGDGSFI--MNVQELATIKVEKLPIKILLLNNQHLGMVMQ---------- 564 (661)
Q Consensus 501 ~g~mG~~lpaAiGaala~----p~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~---------- 564 (661)
.|.-+.+|++|+|+|.|+ .++.||+++|||++- |.+..|..+...+-++ |||+||+.+++-..
T Consensus 188 ~GHssTSiSaalG~a~ardl~g~~~~vvaVIGDGaltgGma~EaLN~~g~~~~~l-ivILNDN~mSi~~n~~~~~~~~vG 266 (701)
T PLN02225 188 TGHGCNSISAGLGLAVARDIKGKRDRVVAVIDNATITAGQAYEAMSNAGYLDSNM-IVILNDSRHSLHPNMEEGSKASIS 266 (701)
T ss_pred CChHHHHHHHHHHHHHHHHhcCCCCcEEEEEcCcchhhhhHHHHHhhhhccCCCE-EEEEeCCCCCCCCCCCCccCCccc
Confidence 355666899999999884 567899999999985 6788899999887775 55566655655432
Q ss_pred -----HHH----Hhhccc-----ccccccCCCCCc----------ccCCccHHHHHhHcCCCEeee---CCHHHHHHHHH
Q 048725 565 -----WED----RFYKAN-----RAHTYLGDPSRE----------SEIFPNMLKFAEACGIPGAQV---TRKADLRAAIQ 617 (661)
Q Consensus 565 -----~~~----~~~~~~-----~~~~~~g~p~~~----------~~~~~d~~~~A~a~G~~~~~v---~~~~el~~al~ 617 (661)
+.. +.|..- ......+.+... ....+.=..+-+.+|++|.-. ++.++|.++|+
T Consensus 267 ~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~ 346 (701)
T PLN02225 267 ALSSIMSKIQSSKIFRKFRELAKAMTKRIGKGMYEWAAKVDEYARGMVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLR 346 (701)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccCCCccCcHHHcCCeEECccCCCCHHHHHHHHH
Confidence 100 000000 000000000000 000000013668899999854 69999999999
Q ss_pred HHHhCC--CcEEEEEEeCCCC
Q 048725 618 TMLDTP--GPYLLDVIFPHQE 636 (661)
Q Consensus 618 ~a~~~~--gp~lIeV~~~~~~ 636 (661)
++.+.+ ||+||+|+|.+..
T Consensus 347 ~~k~~~~~~PvlvHv~T~KGk 367 (701)
T PLN02225 347 EVSSLDSMGPVLVHVITEENR 367 (701)
T ss_pred HHHcCCCCCCEEEEEEecCCC
Confidence 988765 9999999998775
No 154
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=98.22 E-value=8.4e-06 Score=89.18 Aligned_cols=117 Identities=21% Similarity=0.215 Sum_probs=91.0
Q ss_pred CCCcccchHHHHHHhhhhCC-----CCcEEEEECCcccccC--hHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcc
Q 048725 500 GLGAMGFGLPAAIGAAVANP-----DAIIVDIDGDGSFIMN--VQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKA 572 (661)
Q Consensus 500 ~~g~mG~~lpaAiGaala~p-----~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~ 572 (661)
+.|.+|.||+.|+|+|++.. +.+|+|++|||..+-. ...+..|.+++++.+++|++|+..++- .
T Consensus 116 ~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA~s~Ag~l~ldnLVai~D~n~is~~---------g 186 (632)
T KOG0523|consen 116 ATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAMSLAGHLKLDNLVAIYDNNKISID---------G 186 (632)
T ss_pred ccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHHHHhhhhhcccCCEEEEEccccccCC---------C
Confidence 44899999999999998742 5689999999999864 666889999999999999999876541 1
Q ss_pred cccccccCCCCCcccCCccHHH-HHhHcCCCEeee--CCHHHHHHHHHHHHh-CCCcEEEEEEeCCC
Q 048725 573 NRAHTYLGDPSRESEIFPNMLK-FAEACGIPGAQV--TRKADLRAAIQTMLD-TPGPYLLDVIFPHQ 635 (661)
Q Consensus 573 ~~~~~~~g~p~~~~~~~~d~~~-~A~a~G~~~~~v--~~~~el~~al~~a~~-~~gp~lIeV~~~~~ 635 (661)
.+..+. ..|..+ -.++||++...| ++.+++.+++.++.. .++|..|-+.+-.+
T Consensus 187 ---~t~~~~-------~~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~~~k~kpt~i~~~t~~g 243 (632)
T KOG0523|consen 187 ---ATSLGF-------DEDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAKSVKGKPTAIKATTFIG 243 (632)
T ss_pred ---CCcccc-------cccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhhhccCCceeeeeeeeee
Confidence 111111 146666 889999999988 478899999998764 67899998888543
No 155
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=98.17 E-value=1e-05 Score=93.39 Aligned_cols=119 Identities=18% Similarity=0.123 Sum_probs=91.3
Q ss_pred CcccchHHHHHHhhhhC-----------CCCcEEEEECCccccc--ChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHH
Q 048725 502 GAMGFGLPAAIGAAVAN-----------PDAIIVDIDGDGSFIM--NVQELATIKVEKLPIKILLLNNQHLGMVMQWEDR 568 (661)
Q Consensus 502 g~mG~~lpaAiGaala~-----------p~~~vv~i~GDGsf~~--~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~ 568 (661)
|+||.|++.|+|.|++. .+++|+|++|||.+.- ++..+..|.+++|+-+++|+|+|...+-
T Consensus 189 GSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~qlD------ 262 (885)
T TIGR00759 189 VSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRLD------ 262 (885)
T ss_pred CCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccC------
Confidence 79999999999998863 3578999999999987 4777899999999988888888865431
Q ss_pred hhcccccccccCCCCCcccCCccHHHHHhHcCCCEeee------------------------------------------
Q 048725 569 FYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQV------------------------------------------ 606 (661)
Q Consensus 569 ~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v------------------------------------------ 606 (661)
.. +. ++ ..+.-++++.-+++|++..+|
T Consensus 263 ---G~---v~-~~----~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R 331 (885)
T TIGR00759 263 ---GP---VR-GN----GKIIQELESLFRGAGWNVIKVLWGSEWDALLARDTSGVLVKLMNETVDGDYQTYKAKDGAYVR 331 (885)
T ss_pred ---Cc---cc-cc----cccchhHHHHHHhcCCEEEEEecCccchHhhcCCCccHHHHHHHhcccHHHHHHhhcchHHHH
Confidence 00 00 00 000137888899999988887
Q ss_pred -----------------------------CCHHHHHHHHHHHHhC-CCcEEEEEEeCCCCC
Q 048725 607 -----------------------------TRKADLRAAIQTMLDT-PGPYLLDVIFPHQEH 637 (661)
Q Consensus 607 -----------------------------~~~~el~~al~~a~~~-~gp~lIeV~~~~~~~ 637 (661)
++++++.+|++++.+. ++|++|-+.|-+...
T Consensus 332 ~~ffg~~~~l~~lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~~~grPTvIlA~TvKG~G 392 (885)
T TIGR00759 332 EHFFNRTPELKALVADMSDADIWALNRGGHDPRKVYAAYAAAQEHKGQPTVILAKTIKGYG 392 (885)
T ss_pred HHhccccHHHHHHhhccchhhhhhccCCCCCHHHHHHHHHHHHhCCCCCEEEEEeeeecCC
Confidence 2788888999888765 579999999987654
No 156
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=98.06 E-value=2.6e-05 Score=91.53 Aligned_cols=119 Identities=18% Similarity=0.162 Sum_probs=92.4
Q ss_pred CcccchHHHHHHhhhhCC-----------CCcEEEEECCccccc--ChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHH
Q 048725 502 GAMGFGLPAAIGAAVANP-----------DAIIVDIDGDGSFIM--NVQELATIKVEKLPIKILLLNNQHLGMVMQWEDR 568 (661)
Q Consensus 502 g~mG~~lpaAiGaala~p-----------~~~vv~i~GDGsf~~--~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~ 568 (661)
|+||.|++.|+|.|+... +++|+|++|||.+.- ++..+..|.+++|+-+++|+|++...+-
T Consensus 203 GSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~lD------ 276 (896)
T PRK13012 203 GSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRLD------ 276 (896)
T ss_pred CCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCcccc------
Confidence 799999999999988743 378999999999987 4777899999999988888888764331
Q ss_pred hhcccccccccCCCCCcccCCccHHHHHhHcCCCEeee--------------------------C---------------
Q 048725 569 FYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQV--------------------------T--------------- 607 (661)
Q Consensus 569 ~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v--------------------------~--------------- 607 (661)
.. .. ++ ....-++++.-+++|++..+| +
T Consensus 277 ---G~---v~-~~----~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~r 345 (896)
T PRK13012 277 ---GP---VR-GN----GRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTTGALVRRFAETVDGQFQTFKANDGAYNR 345 (896)
T ss_pred ---Cc---cc-cc----cccchHHHHHHHhCCCEEEEEecccchHHHhcCCCccHHHHHHHhCCcHHHHHHhhcchHHHH
Confidence 00 00 00 000137899999999999988 4
Q ss_pred ------------------------------CHHHHHHHHHHHHh-CCCcEEEEEEeCCCCC
Q 048725 608 ------------------------------RKADLRAAIQTMLD-TPGPYLLDVIFPHQEH 637 (661)
Q Consensus 608 ------------------------------~~~el~~al~~a~~-~~gp~lIeV~~~~~~~ 637 (661)
+++++.+|+++|.+ .++|++|-+.|-....
T Consensus 346 ~~ff~~~~~~~~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~~~~PtvIla~TvkG~G 406 (896)
T PRK13012 346 EHFFGQDPELAALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRHKGQPTVILAKTKKGYG 406 (896)
T ss_pred HHhccccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhCCCCCEEEEEEeeecCC
Confidence 88899999988875 4579999999987664
No 157
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=98.06 E-value=3.2e-05 Score=90.48 Aligned_cols=120 Identities=18% Similarity=0.161 Sum_probs=93.4
Q ss_pred CcccchHHHHHHhhhhCC-----------CCcEEEEECCccccc--ChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHH
Q 048725 502 GAMGFGLPAAIGAAVANP-----------DAIIVDIDGDGSFIM--NVQELATIKVEKLPIKILLLNNQHLGMVMQWEDR 568 (661)
Q Consensus 502 g~mG~~lpaAiGaala~p-----------~~~vv~i~GDGsf~~--~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~ 568 (661)
|+||.|++.|+|+|+... +++|+|++|||.+.- ++..+..|.+++|+-+++|+|.+...+-
T Consensus 195 gS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lD------ 268 (891)
T PRK09405 195 VSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLD------ 268 (891)
T ss_pred cccchhHHHHHHHHHhCccccccccccCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccC------
Confidence 799999999999998765 678999999999987 4777999999999988888888764331
Q ss_pred hhcccccccccCCCCCcccCCccHHHHHhHcCCCEeee--------------------------C---------------
Q 048725 569 FYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQV--------------------------T--------------- 607 (661)
Q Consensus 569 ~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v--------------------------~--------------- 607 (661)
.. .. ++ ....-++++.-+++|++...| +
T Consensus 269 ---G~---v~-~~----~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~~d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R 337 (891)
T PRK09405 269 ---GP---VR-GN----GKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAKDTSGKLVQLMNETVDGDYQTYKAKDGAYVR 337 (891)
T ss_pred ---Cc---cc-cc----cccchhHHHHHhhCCCEEEEEeccccchhhhccCCccHHHHHHHhCCcHHHHHHHhcccHHHH
Confidence 10 00 00 000137899999999999888 2
Q ss_pred ------------------------------CHHHHHHHHHHHHhC-CCcEEEEEEeCCCCCc
Q 048725 608 ------------------------------RKADLRAAIQTMLDT-PGPYLLDVIFPHQEHV 638 (661)
Q Consensus 608 ------------------------------~~~el~~al~~a~~~-~gp~lIeV~~~~~~~~ 638 (661)
+.+++.+|++++.+. ++|++|-+.|-....+
T Consensus 338 ~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~~~~PtvIia~TvkG~G~ 399 (891)
T PRK09405 338 EHFFGKYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVEHKGQPTVILAKTIKGYGM 399 (891)
T ss_pred HHhcCCCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHhCCCCCEEEEEeceecCCC
Confidence 788999999888874 7899999999876643
No 158
>PRK05261 putative phosphoketolase; Provisional
Probab=98.01 E-value=2.9e-05 Score=89.70 Aligned_cols=118 Identities=20% Similarity=0.236 Sum_probs=78.9
Q ss_pred CcccchHHHHHHhhhhCCCCcEEEEECCcccccC-hHHHHHHH----HcCCCeEEEEEeCCcchhHHHHHHHhhcccccc
Q 048725 502 GAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMN-VQELATIK----VEKLPIKILLLNNQHLGMVMQWEDRFYKANRAH 576 (661)
Q Consensus 502 g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~-~~eL~ta~----~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~ 576 (661)
|.+|++++.|+|+++..++..|+|++|||.+.-. +...|.+. .+++.-++.|+++++|.|-. .
T Consensus 142 G~LG~gls~A~G~Al~~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~Ng~~Is~------------p 209 (785)
T PRK05261 142 GELGYSLSHAYGAAFDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKIAN------------P 209 (785)
T ss_pred CchhhHHHHHHHHHHcCCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEecCCcCCC------------C
Confidence 7999999999999999999999999999995432 22234322 23455455555566687631 1
Q ss_pred cccCCCCCcccCCccHHHHHhHcCCCEeeeC--CHHHHHHHHH----HHHh-----------C---CCcE--EEEEEeCC
Q 048725 577 TYLGDPSRESEIFPNMLKFAEACGIPGAQVT--RKADLRAAIQ----TMLD-----------T---PGPY--LLDVIFPH 634 (661)
Q Consensus 577 ~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~----~a~~-----------~---~gp~--lIeV~~~~ 634 (661)
+..... ..-++.+..++||++.+.|+ +++++.++++ .+++ . .+|. +|.+++..
T Consensus 210 t~~~~~-----~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~rT~k 284 (785)
T PRK05261 210 TILARI-----SDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVLRTPK 284 (785)
T ss_pred cccccc-----CcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEECCc
Confidence 111100 01389999999999999996 5666555522 2222 2 4788 99999987
Q ss_pred CC
Q 048725 635 QE 636 (661)
Q Consensus 635 ~~ 636 (661)
.-
T Consensus 285 G~ 286 (785)
T PRK05261 285 GW 286 (785)
T ss_pred cC
Confidence 54
No 159
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=97.89 E-value=0.00016 Score=77.76 Aligned_cols=157 Identities=24% Similarity=0.190 Sum_probs=120.9
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcC---CCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhh
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRS---NNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGA 163 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~---~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~ 163 (661)
.++|.++++......|++.+.++|=+...++.+.+.+. -+..++..-+|.+|..|+.|-+.+.-| .. ..|||||+
T Consensus 5 ~~~Gn~AvA~~a~~a~~~~~a~YPITPss~i~e~l~~~~~~~~~~~vq~EsE~~a~s~v~GA~~aGar-~~-TaTSg~Gl 82 (365)
T COG0674 5 VMDGNEAVAYAAIAAGCRVIAAYPITPSSEIAEYLASWKAKVGGVFVQMESEIGAISAVIGASYAGAR-AF-TATSGQGL 82 (365)
T ss_pred eccHHHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHhhcCcEEEEeccHHHHHHHHHHHHhhCcc-eE-eecCCccH
Confidence 46899999999999999999999999999999988764 258999999999999999997766554 33 36999999
Q ss_pred HHHHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcc-cccccc-cCCcCcHHHHHHHHHHHhhcCCCceE
Q 048725 164 TNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSI-TKHNYL-VLDVDDIPRIVREAFLLATSGRPGPV 241 (661)
Q Consensus 164 ~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~i-tk~~~~-v~~~~~i~~~i~~A~~~a~s~~~GPV 241 (661)
+=+..++.-|.-..+|+++...+++-...+..- ..||.++.... +-|-.. ..+.++.-....+||+.|..-+ -||
T Consensus 83 ~Lm~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p~--~~dq~D~~~~r~~g~~~~~~~s~qEa~d~t~~Af~iAe~~~-~Pv 159 (365)
T COG0674 83 LLMAEALGLAAGTETPLVIVVAQRPLPSTGLPI--KGDQSDLMAARDTGFPILVSASVQEAFDLTLLAFNIAEKVL-TPV 159 (365)
T ss_pred HHHHHHHHHHHhccCCeEEEEeccCcCCCcccc--cccHHHHHHHHccCceEEeeccHHHHHHHHHHHHHHHHHhc-CCE
Confidence 999999999999999999999999855433311 12333332221 222221 2267888888899999999854 688
Q ss_pred EEEeccc
Q 048725 242 LIDVPKD 248 (661)
Q Consensus 242 ~I~iP~d 248 (661)
.+.+-.-
T Consensus 160 i~~~D~~ 166 (365)
T COG0674 160 IVLLDGF 166 (365)
T ss_pred EEeeccc
Confidence 7775443
No 160
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=97.79 E-value=0.00012 Score=66.93 Aligned_cols=74 Identities=28% Similarity=0.416 Sum_probs=53.0
Q ss_pred HHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeecCCCCCCCCC-----------------CCCCCCcccCC
Q 048725 282 QIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTLMGLGSFPG-----------------TDELSLQMLGM 342 (661)
Q Consensus 282 ~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt~~gkg~~p~-----------------~hpl~lg~~G~ 342 (661)
-++.+|++||||++++|.... ...+.+.+|+|+.++|+++|....+.+-+ .+|-|.|.-
T Consensus 27 v~ammIkkAkrPLlivGp~~~dee~~E~~vKi~ekfnipivaTa~~~~~~~~~~i~~~~~~lh~it~~l~Dp~w~G~d-- 104 (170)
T COG1880 27 VVAMMIKKAKRPLLIVGPLALDEELLELAVKIIEKFNIPIVATASSMGNLIGRGIGSEYINLHAITQYLTDPNWPGFD-- 104 (170)
T ss_pred HHHHHHHhcCCceEEecccccCHHHHHHHHHHHHhcCCceEecchhhcchhhcccccchhHHHHHHHHhcCCCCCCcC--
Confidence 456789999999999999876 24567889999999999999765553322 122222221
Q ss_pred CCcHHHHHhhhcCCEEEEeCCCC
Q 048725 343 HGTVYANYAVDKSDLLLAFGVRF 365 (661)
Q Consensus 343 ~g~~~a~~~l~~aDlvL~vG~~~ 365 (661)
|+ -+.|+||.+|+..
T Consensus 105 -g~-------g~yDlviflG~~~ 119 (170)
T COG1880 105 -GN-------GNYDLVIFLGSIY 119 (170)
T ss_pred -CC-------CCcceEEEEeccH
Confidence 11 2689999999985
No 161
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=97.77 E-value=2.8e-05 Score=78.41 Aligned_cols=115 Identities=22% Similarity=0.295 Sum_probs=78.3
Q ss_pred cccchHHHHHHhhhhC-----CCCcEEEEECCcccccC--hHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhccccc
Q 048725 503 AMGFGLPAAIGAAVAN-----PDAIIVDIDGDGSFIMN--VQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRA 575 (661)
Q Consensus 503 ~mG~~lpaAiGaala~-----p~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~ 575 (661)
.+-..+|-|+|++.+. .++-+|++.|||+.--. -..|.-|+-...|+++|+=||+ |+|.......+ .
T Consensus 194 platqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~CRNNG-~AISTptseQy-r---- 267 (432)
T KOG1182|consen 194 PLATQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFFCRNNG-WAISTPTSEQY-R---- 267 (432)
T ss_pred hhhhccchhhhhhhhhhhcccCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEEEcCCC-eeeccccHHHh-c----
Confidence 5566788888887763 24789999999988652 3456777788999998888775 98853222221 1
Q ss_pred ccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHH--HHH----HHHHhCCCcEEEEEEeCCCC
Q 048725 576 HTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLR--AAI----QTMLDTPGPYLLDVIFPHQE 636 (661)
Q Consensus 576 ~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~--~al----~~a~~~~gp~lIeV~~~~~~ 636 (661)
|+ -++.-..+||+...||+..+-|. .|. +.++..++|+|||.++-+--
T Consensus 268 ----~D---------GIa~kG~aYGi~sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliEamtYRvG 321 (432)
T KOG1182|consen 268 ----GD---------GIAVKGPAYGIRSIRVDGNDALAVYNAVKEAREMAVTEQRPVLIEAMTYRVG 321 (432)
T ss_pred ----CC---------ceEEeccccceEEEEecCcchHHHHHHHHHHHHHHHhccCchhhhhhhhhhc
Confidence 11 12233458899999998776652 233 34555789999999996543
No 162
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=97.46 E-value=0.0018 Score=79.46 Aligned_cols=114 Identities=12% Similarity=0.094 Sum_probs=84.2
Q ss_pred CcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHc
Q 048725 521 AIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEAC 599 (661)
Q Consensus 521 ~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~ 599 (661)
+.||++.||| ++-..++.|..+.+.|.++++||+||..|+.+.. |... ..+.....-..|.......-|...+|.++
T Consensus 952 ~sv~~~~GDG~~~diG~~~l~~~~~r~~~v~~i~~dne~Y~nTgg-Q~S~-~tp~g~~t~~~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIGYGGLDHVLASGKDVNVLVMDTEVYSNTGG-QSSK-ATPTGAIAKFAAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred ceeEEEecchhhhccCccchHHHHHcCCCeEEEEECCcccccCCC-cCCC-CCCCcCccccCCCCCCCCCcCHHHHHHHC
Confidence 4699999999 5567899999999999999999999999998632 1110 00000000012222222235999999999
Q ss_pred CCCEe-ee---CCHHHHHHHHHHHHhCCCcEEEEEEeCCCC
Q 048725 600 GIPGA-QV---TRKADLRAAIQTMLDTPGPYLLDVIFPHQE 636 (661)
Q Consensus 600 G~~~~-~v---~~~~el~~al~~a~~~~gp~lIeV~~~~~~ 636 (661)
|..|+ ++ .++.++.+++++|.+.+||++|++..+...
T Consensus 1030 g~~yvA~~~~~~~~~~~~~~~~~A~~~~G~s~i~~~~pC~~ 1070 (1165)
T TIGR02176 1030 GYVYVAQVSMGANMQQTLKAFREAEAYDGPSIVIAYSPCIN 1070 (1165)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHHcCCCCEEEEEECCCcc
Confidence 99887 44 278999999999999999999999998654
No 163
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=96.68 E-value=0.035 Score=52.44 Aligned_cols=148 Identities=16% Similarity=0.125 Sum_probs=91.8
Q ss_pred HHHHHHHHHHCCCCEEEeccCCCcHHHHHHH-HcCCCCeEE-ccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHH
Q 048725 91 ADILVEALERQGVTDVFAYPGGASMEIHQAL-TRSNNIRNV-LPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVS 168 (661)
Q Consensus 91 ad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL-~~~~~i~~v-~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~ 168 (661)
+++|.+.+++..= .++.-..-........+ .+.++ +++ ....|++.+.+|.|.|... ...++. +...-...++.
T Consensus 4 ~~~l~~~~~~~~~-~v~~~~Dl~~~~~~~~~~~~~p~-r~i~~gIaE~~~vg~A~GlA~~G-~~pi~~-~~~~f~~ra~d 79 (156)
T cd07033 4 GEALLELAKKDPR-IVALSADLGGSTGLDKFAKKFPD-RFIDVGIAEQNMVGIAAGLALHG-LKPFVS-TFSFFLQRAYD 79 (156)
T ss_pred HHHHHHHHhhCCC-EEEEECCCCCCCCcHHHHHhCCC-CeEEeChhHHHHHHHHHHHHHCC-CeEEEE-ECHHHHHHHHH
Confidence 4566666666432 33322221111122222 22333 444 4489999999999999765 434443 44555666777
Q ss_pred HHH-HhhhCCCcEEEEecCCCCcc-cCCCCCCCCCHHHHhhccccccc-ccCCcCcHHHHHHHHHHHhhcCCCceEEEEe
Q 048725 169 GLA-DALLDSVPLVAITGQVPRRM-IGTDAFQETPIVEVTRSITKHNY-LVLDVDDIPRIVREAFLLATSGRPGPVLIDV 245 (661)
Q Consensus 169 gl~-~A~~~~iPll~ItG~~p~~~-~g~~~~q~~~~~~~~~~itk~~~-~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~i 245 (661)
.|. ++...+.||+++........ .+...+|..++..+++.+-.... .+.+++++..+++.|++. ++||+|.+
T Consensus 80 qi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~~-----~~P~~irl 154 (156)
T cd07033 80 QIRHDVALQNLPVKFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALEY-----DGPVYIRL 154 (156)
T ss_pred HHHHHHhccCCCeEEEEECCcEecCCCCcccchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHhC-----CCCEEEEe
Confidence 777 78889999999986433222 12234567777888988865443 466778888888877765 37999998
Q ss_pred cc
Q 048725 246 PK 247 (661)
Q Consensus 246 P~ 247 (661)
|.
T Consensus 155 ~~ 156 (156)
T cd07033 155 PR 156 (156)
T ss_pred eC
Confidence 74
No 164
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.54 E-value=0.057 Score=51.83 Aligned_cols=126 Identities=16% Similarity=0.083 Sum_probs=87.5
Q ss_pred hhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHH
Q 048725 485 QFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVM 563 (661)
Q Consensus 485 ~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~ 563 (661)
..+.-....+++....- +.+..+|-|.+.+. +++.+|++-=| ++.-.+..|..|...++|+++|.-.-.....-
T Consensus 32 ~al~~~~~i~~i~~~~E---~~A~~~A~g~ar~~-g~~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g~~~~~~~~- 106 (172)
T PF02776_consen 32 DALEKSPGIRFIPVRHE---QGAAFMADGYARAT-GRPGVVIVTSGPGATNALTGLANAYADRIPVLVITGQRPSAGEG- 106 (172)
T ss_dssp HHHHHTTTSEEEE-SSH---HHHHHHHHHHHHHH-SSEEEEEEETTHHHHTTHHHHHHHHHTT-EEEEEEEESSGGGTT-
T ss_pred HHhhhhcceeeecccCc---chhHHHHHHHHHhh-ccceEEEeecccchHHHHHHHhhcccceeeEEEEecccchhhhc-
Confidence 33333334666665442 23667788887776 56666666555 56666899999999999999998887654431
Q ss_pred HHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 564 QWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 564 ~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
...+. ...|...+.+.+.-...++++++++..++++|+. .+||+.|++..|-
T Consensus 107 ------------~~~~q-------~~~d~~~~~~~~~k~~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~dv 163 (172)
T PF02776_consen 107 ------------RGAFQ-------QEIDQQSLFRPVTKWSYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQDV 163 (172)
T ss_dssp ------------TTSTT-------SSTHHHHHHGGGSSEEEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEHHH
T ss_pred ------------ccccc-------cchhhcchhccccchhcccCCHHHHHHHHHHHHHHhccCCCccEEEEcChhH
Confidence 01111 0158899999999889999999998888887764 5899999998863
No 165
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=96.46 E-value=0.12 Score=49.31 Aligned_cols=118 Identities=14% Similarity=0.086 Sum_probs=80.4
Q ss_pred CCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEE-CCcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhh
Q 048725 492 PRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDID-GDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFY 570 (661)
Q Consensus 492 p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~-GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~ 570 (661)
..+++....-.+ +.-+|-|.+.+. +++.++++ ...++...+..+.+|...++|+++|.-+-.....
T Consensus 38 ~i~~v~~rhE~~---A~~mA~gyar~t-g~~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g~~~~~~~--------- 104 (164)
T cd07039 38 KIEFIQVRHEEA---AAFAASAEAKLT-GKLGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAGQVPTDEL--------- 104 (164)
T ss_pred CCeEEEeCCHHH---HHHHHHHHHHHh-CCCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEecCCccccc---------
Confidence 355555544322 445677777766 34555444 4556666689999999999999999875542110
Q ss_pred cccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh----CCCcEEEEEEeCC
Q 048725 571 KANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD----TPGPYLLDVIFPH 634 (661)
Q Consensus 571 ~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~----~~gp~lIeV~~~~ 634 (661)
+.. .+. ..|...+.+.+--+..++++++++.+++++|+. .+||+.||+..|-
T Consensus 105 ~~~----~~q--------~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~dv 160 (164)
T cd07039 105 GTD----YFQ--------EVDLLALFKDVAVYNETVTSPEQLPELLDRAIRTAIAKRGVAVLILPGDV 160 (164)
T ss_pred CCC----CCc--------ccCHHHHHHHhhcEEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChHH
Confidence 000 011 158889999999899999999988887777664 5699999998763
No 166
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=96.30 E-value=0.018 Score=54.19 Aligned_cols=104 Identities=17% Similarity=0.188 Sum_probs=74.9
Q ss_pred hHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcc
Q 048725 507 GLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRES 586 (661)
Q Consensus 507 ~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~ 586 (661)
+..+|.|.+.+..+..++.+...-++...++.|..|...++|+++|..+-.....- . .. +.
T Consensus 46 A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~~~~~~~~~---------~---~~-~q------ 106 (155)
T cd07035 46 AVGMADGYARATGKPGVVLVTSGPGLTNAVTGLANAYLDSIPLLVITGQRPTAGEG---------R---GA-FQ------ 106 (155)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeCCCcccccc---------C---Cc-cc------
Confidence 67788888888633334445547788888999999999999999998876643210 0 00 00
Q ss_pred cCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh----C-CCcEEEEEE
Q 048725 587 EIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD----T-PGPYLLDVI 631 (661)
Q Consensus 587 ~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~----~-~gp~lIeV~ 631 (661)
..|...+.+.+-....++++.+++.+.+.+|+. . +||+.|++.
T Consensus 107 --~~d~~~~~~~~~~~~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip 154 (155)
T cd07035 107 --EIDQVALFRPITKWAYRVTSPEEIPEALRRAFRIALSGRPGPVALDLP 154 (155)
T ss_pred --ccCHHHHHHHHhceEEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEec
Confidence 146777777776778899999999888888775 2 589999874
No 167
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=96.23 E-value=0.12 Score=54.11 Aligned_cols=139 Identities=14% Similarity=0.215 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCcc-chHHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcc--cCCCCcHHHHHh
Q 048725 275 PSEVHLEQIVRLISESKKPVLYVGGGCL-NSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQM--LGMHGTVYANYA 351 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~AkrPvIv~G~g~~-~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~--~G~~g~~~a~~~ 351 (661)
...+++++++++|.+||||+++-+.... .+.+.-.+++|++|+-+ .+..... .-|..++. .|.-+. ..-+.
T Consensus 64 ~~deAie~Aa~ILv~aKrPllyg~s~tscEA~~~gielaE~~gavi-D~~asvc----hGp~~~alqe~g~p~~-Tlgev 137 (429)
T COG1029 64 DYDEAIEKAAEILVNAKRPLLYGWSSTSCEAQELGIELAEKLGAVI-DSNASVC----HGPSVLALQEAGKPTA-TLGEV 137 (429)
T ss_pred cHHHHHHHHHHHHHhccCceEeccccchHHHHHHHHHHHHHhCcEe-cCCCccc----cchHHHHHHhcCCccc-chhhh
Confidence 4678999999999999999999887665 56777899999999854 2211111 11222222 111111 11234
Q ss_pred hhcCCEEEEeCCCCCCCc---CCccccc---------CCCCeEEEEcCCchhhccC--CCCcceEeccHHHHHHHHHHHh
Q 048725 352 VDKSDLLLAFGVRFDDRV---TGKLEAF---------ASRAKIVHIDIDSAEIGKN--KQPHVSVCADLKLALKGINRIL 417 (661)
Q Consensus 352 l~~aDlvL~vG~~~~~~~---t~~~~~~---------~~~~~vi~Id~d~~~i~~~--~~~~~~i~~D~~~~L~~L~~~l 417 (661)
-+.+|+|+-.|+..-+.. ...+..| ..+.++|.||+....-.+. ....+....|. ..+.+|...+
T Consensus 138 KNraDviVyWGtNP~~shPRhmSRYs~f~RG~~~~rGr~dRtvIvVD~RkT~TAklad~~~qi~p~sDy-elisAl~~~l 216 (429)
T COG1029 138 KNRADVIVYWGTNPMHSHPRHMSRYSVFPRGFFRPRGREDRTVIVVDPRKTATAKLADNHVQIKPNSDY-ELISALRAAL 216 (429)
T ss_pred cccccEEEEeCCCcccccchhhhhcccccccccccCCcccceEEEEecCcCchhhhhhheEecCCCCcH-HHHHHHHHHh
Confidence 568999999998753321 1111112 2345789999866543322 22223334454 3456666666
Q ss_pred cCC
Q 048725 418 GGK 420 (661)
Q Consensus 418 ~~~ 420 (661)
...
T Consensus 217 ~G~ 219 (429)
T COG1029 217 HGK 219 (429)
T ss_pred cCC
Confidence 543
No 168
>PF02552 CO_dh: CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit; InterPro: IPR003704 Carbon monoxide dehydrogenase (Cdh) from Methanosarcina mazei (Methanosarcina frisia) Go1 is a Ni2+-, Fe2+-, and S2-containing alpha2beta2 heterotetramer []. The CO dehydrogenase enzyme complex from Methanosarcina thermophila contains a corrinoid/iron-sulphur enzyme composed of two subunits (delta and gamma) []. This family consists of carbon monoxide dehydrogenase I/II beta subunit 1.2.99.2 from EC and CO dehydrogenase (acetyl-CoA synthase epsilon subunit).; GO: 0019385 methanogenesis, from acetate; PDB: 3CF4_G 1YTL_B.
Probab=96.06 E-value=0.017 Score=54.77 Aligned_cols=101 Identities=26% Similarity=0.269 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCccch--HHHHHHHHHHhCCCeeecC-CCCCCCCC-------------CCCCCCcccC
Q 048725 278 VHLEQIVRLISESKKPVLYVGGGCLNS--SEELRKFVELTGIPVASTL-MGLGSFPG-------------TDELSLQMLG 341 (661)
Q Consensus 278 ~~l~~~~~~L~~AkrPvIv~G~g~~~a--~~~l~~lae~lg~PV~tt~-~gkg~~p~-------------~hpl~lg~~G 341 (661)
..++.++++|++||||++++|..+... .++........++|++.|. +.++.-+- +.|.+-|..|
T Consensus 22 ~~~~~aa~~i~kAKrPllvvGp~vl~~~~~~~~~k~~~~~~i~~~at~~~~~~~~d~~~ky~~~~~~~~l~~p~w~g~~g 101 (167)
T PF02552_consen 22 SPPEVAAKMIKKAKRPLLVVGPLVLWDWNEEAIEKAIAKKNIPIAATGFNIIGMPDYRPKYPKIEPENELNDPHWNGTDG 101 (167)
T ss_dssp -HSHHHHHHHHHSSSEEEEE-STT--HHHHHHHHHHHHCCTSEEEEETCCHCCHCSSGCCE-HHHHHHHCCSTT--TTTS
T ss_pred ChHHHHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHcCcceeecccccccccccccccccccHHHhcCCCCCCcccc
Confidence 344788999999999999999998643 3344556667899999886 44444211 1111111111
Q ss_pred CCCcHHHHHhhhcCCEEEEeCCCCC--CCcCCcccccCCCCeEEEEcCC
Q 048725 342 MHGTVYANYAVDKSDLLLAFGVRFD--DRVTGKLEAFASRAKIVHIDID 388 (661)
Q Consensus 342 ~~g~~~a~~~l~~aDlvL~vG~~~~--~~~t~~~~~~~~~~~vi~Id~d 388 (661)
-.+.|++|.+|...- +.....++.|.+..+++.++..
T Consensus 102 ----------~g~~Dl~iFiGv~~yya~~~Ls~LK~ftp~~~t~~~~~~ 140 (167)
T PF02552_consen 102 ----------HGNYDLVIFIGVHCYYANQVLSILKHFTPCLKTISCDRY 140 (167)
T ss_dssp ----------S---SEEEEES--HHHHHHHHHHHHHH-TT-EEEE-SSS
T ss_pred ----------CCcccEEEEecchHHHHHHHHHHHhccCCceEEEEeccc
Confidence 127899999998852 2222345567777777777643
No 169
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=95.64 E-value=0.89 Score=48.97 Aligned_cols=156 Identities=17% Similarity=0.075 Sum_probs=86.1
Q ss_pred CCcHHHHHHHHHHHCCCC--EEEeccCCCc-----HHHHHHHHcCC-CCeEEc-cCChhHHHHHHHHHHHHhCCcEEEEE
Q 048725 87 PRKGADILVEALERQGVT--DVFAYPGGAS-----MEIHQALTRSN-NIRNVL-PRHEQGGIFAAEGYARSSGKPGICIA 157 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~--~vFg~PG~~~-----~~l~~aL~~~~-~i~~v~-~~hE~~A~~~A~Gyar~tg~~gv~~~ 157 (661)
+++..+++.+.|.++.-+ .++.+.++.. ....+.+.+.- .=|++. ..-|++++.+|.|+|....+|-+++
T Consensus 34 ~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pvv~~- 112 (355)
T PTZ00182 34 KMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIAEF- 112 (355)
T ss_pred chHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEEEEe-
Confidence 445556666666554332 3444434322 22344444321 123443 4899999999999999766665553
Q ss_pred ccchhhHHHHHHHHH--hhh-------CCCcEEEEecCCCCcccCCCCC-CCCCHHHHhhccccccc-ccCCcCcHHHHH
Q 048725 158 TSGPGATNLVSGLAD--ALL-------DSVPLVAITGQVPRRMIGTDAF-QETPIVEVTRSITKHNY-LVLDVDDIPRIV 226 (661)
Q Consensus 158 tsGpG~~N~l~gl~~--A~~-------~~iPll~ItG~~p~~~~g~~~~-q~~~~~~~~~~itk~~~-~v~~~~~i~~~i 226 (661)
...+=+..++--|.+ |+. -++||+++...-.....| ..+ |.. ..+++.+..+.. .+.++.++..++
T Consensus 113 ~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G-~tHs~~~--ea~lr~iPn~~V~~Psd~~e~~~~l 189 (355)
T PTZ00182 113 MFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGG-AYHSQSF--EAYFAHVPGLKVVAPSDPEDAKGLL 189 (355)
T ss_pred chhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCC-CcccchH--HHHHhcCCCCEEEeeCCHHHHHHHH
Confidence 333333444443322 233 368888764211111111 122 333 388888766554 355677777777
Q ss_pred HHHHHHhhcCCCceEEEEeccchhh
Q 048725 227 REAFLLATSGRPGPVLIDVPKDIQQ 251 (661)
Q Consensus 227 ~~A~~~a~s~~~GPV~I~iP~dv~~ 251 (661)
+.|++. .|||||..|..+..
T Consensus 190 ~~a~~~-----~~P~~i~~p~~l~r 209 (355)
T PTZ00182 190 KAAIRD-----PNPVVFFEPKLLYR 209 (355)
T ss_pred HHHHhC-----CCcEEEEeehHHhC
Confidence 766652 49999998887643
No 170
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=95.59 E-value=0.11 Score=49.65 Aligned_cols=111 Identities=16% Similarity=0.085 Sum_probs=74.5
Q ss_pred EEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCC-CcEEEEecCCCCcccCC-C-CCCCCCHHHH
Q 048725 129 NVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDS-VPLVAITGQVPRRMIGT-D-AFQETPIVEV 205 (661)
Q Consensus 129 ~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~gl~~A~~~~-iPll~ItG~~p~~~~g~-~-~~q~~~~~~~ 205 (661)
+-....|++.+.+|.|+|....+|-++ +..+-+..+...+..+-..+ +|+|+...- .. ..|. + .+|..++..+
T Consensus 52 ~~~gIaE~~~vg~a~GlA~~G~~pi~~--~~~~f~~~a~~~~~~~~~~~~~~~v~~~~~-g~-~~g~~G~tH~~~~~~~~ 127 (168)
T smart00861 52 IDTGIAEQAMVGFAAGLALAGLRPVVA--IFFTFFDRAKDQIRSDGAMGRVPVVVRHDS-GG-GVGEDGPTHHSQEDEAL 127 (168)
T ss_pred EEcCcCHHHHHHHHHHHHHcCCCcEEE--eeHHHHHHHHHHHHHhCcccCCCEEEEecC-cc-ccCCCCccccchhHHHH
Confidence 344589999999999999987655544 55566556666666555554 666555521 11 1222 3 3777888889
Q ss_pred hhccccccc-ccCCcCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 048725 206 TRSITKHNY-LVLDVDDIPRIVREAFLLATSGRPGPVLIDVPK 247 (661)
Q Consensus 206 ~~~itk~~~-~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~ 247 (661)
++.+..... .+.+++++..+++.|++ ...||++|.++.
T Consensus 128 ~~~iP~~~v~~P~~~~e~~~~l~~a~~----~~~~p~~i~~~~ 166 (168)
T smart00861 128 LRAIPGLKVVAPSDPAEAKGLLRAAIR----RDDGPPVIRLER 166 (168)
T ss_pred HhcCCCcEEEecCCHHHHHHHHHHHHh----CCCCCEEEEecC
Confidence 998876543 46778888888888773 234899999874
No 171
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=95.55 E-value=0.099 Score=50.52 Aligned_cols=118 Identities=20% Similarity=0.158 Sum_probs=75.8
Q ss_pred eEEc-cCChhHHHHHHHHHHHHhC-CcEEEEEccchhhH----HHHHHHH-HhhhCCCcEEEEecCCCCcccCCCCCCCC
Q 048725 128 RNVL-PRHEQGGIFAAEGYARSSG-KPGICIATSGPGAT----NLVSGLA-DALLDSVPLVAITGQVPRRMIGTDAFQET 200 (661)
Q Consensus 128 ~~v~-~~hE~~A~~~A~Gyar~tg-~~gv~~~tsGpG~~----N~l~gl~-~A~~~~iPll~ItG~~p~~~~g~~~~q~~ 200 (661)
+++. ...|++.+.+|.|+|...+ ++.++. +.++=+. =....+. .....+.|+.+++...-....+...+|..
T Consensus 49 r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~~-~f~~F~~~~q~r~~~~~~~~~~~~~~~v~v~~~~g~~~~~~G~tH~s~ 127 (178)
T PF02779_consen 49 RFINTGIAEQNMVGMAAGLALAGGLRPPVES-TFADFLTPAQIRAFDQIRNDMAYGQLPVPVGTRAGLGYGGDGGTHHSI 127 (178)
T ss_dssp TEEE--S-HHHHHHHHHHHHHHSSSEEEEEE-EEGGGGGGGHHHHHHHHHHHHHHHTS-EEEEEEESGGGSTTGTTTSSS
T ss_pred eEEecCcchhhccceeeeeeecccccceeEe-eccccccccchhhhhhhhhhhhcccceecceeecCccccccccccccc
Confidence 4444 4899999999999998775 766664 5555444 2334444 56677888774443221111222456778
Q ss_pred CHHHHhhccccccc-ccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccch
Q 048725 201 PIVEVTRSITKHNY-LVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDI 249 (661)
Q Consensus 201 ~~~~~~~~itk~~~-~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~dv 249 (661)
+...+++.+-.+.. .+.+++++..+++.|++. ...|||||..|+..
T Consensus 128 ~d~~~~~~iPg~~v~~Psd~~e~~~~l~~a~~~---~~~~P~~ir~~r~~ 174 (178)
T PF02779_consen 128 EDEAILRSIPGMKVVVPSDPAEAKGLLRAAIRR---ESDGPVYIREPRGL 174 (178)
T ss_dssp SHHHHHHTSTTEEEEE-SSHHHHHHHHHHHHHS---SSSSEEEEEEESSE
T ss_pred ccccccccccccccccCCCHHHHHHHHHHHHHh---CCCCeEEEEeeHHh
Confidence 88999999877655 356778888877777763 12599999999764
No 172
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=95.47 E-value=0.34 Score=46.33 Aligned_cols=149 Identities=19% Similarity=0.088 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHCCCCEEEeccCCCc----HHHHHHHHcC-CCCeEEcc-CChhHHHHHHHHHHHHhCCcEEEEEccchhh
Q 048725 90 GADILVEALERQGVTDVFAYPGGAS----MEIHQALTRS-NNIRNVLP-RHEQGGIFAAEGYARSSGKPGICIATSGPGA 163 (661)
Q Consensus 90 gad~lv~~L~~~GV~~vFg~PG~~~----~~l~~aL~~~-~~i~~v~~-~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~ 163 (661)
.++.|.+.+++ .-+.++.-.+... ....+.+.+. ++.|++.+ ..|++.+.+|.|+|+..-+|-++ .+.++=+
T Consensus 3 ~~~~l~~~~~~-~~~vv~l~~D~~~~~g~~~~~~~~~~~~p~~R~~~~gIaEq~~vg~AaGlA~~G~~pi~~-~~~a~Fl 80 (167)
T cd07036 3 INEALDEEMER-DPRVVVLGEDVGDYGGVFKVTKGLLDKFGPDRVIDTPIAEAGIVGLAVGAAMNGLRPIVE-IMFADFA 80 (167)
T ss_pred HHHHHHHHHhc-CCCEEEECcccccCCCcchHhHHHHHhCCCceEEeCCCcHHHHHHHHHHHHHcCCEEEEE-eehHHHH
Confidence 35667666655 4454444443221 2345556553 44577776 89999999999999865444443 3566656
Q ss_pred HHHHHHHHH--hhhC-------CCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccc-cCCcCcHHHHHHHHHHHh
Q 048725 164 TNLVSGLAD--ALLD-------SVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYL-VLDVDDIPRIVREAFLLA 233 (661)
Q Consensus 164 ~N~l~gl~~--A~~~-------~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~-v~~~~~i~~~i~~A~~~a 233 (661)
..++--+.. |+.+ +.||+++...-. ..+.+..|......+++.+-.+... +.++++...+++.+++.
T Consensus 81 ~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg--~~~~G~ths~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~~~~- 157 (167)
T cd07036 81 LPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGG--GIGGGAQHSQSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIRD- 157 (167)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCC--CCCcChhhhhhHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhC-
Confidence 566655532 3333 589988863222 1123333444456888888665543 56777777777777653
Q ss_pred hcCCCceEEEEecc
Q 048725 234 TSGRPGPVLIDVPK 247 (661)
Q Consensus 234 ~s~~~GPV~I~iP~ 247 (661)
.|||.+--|+
T Consensus 158 ----~~P~~~~e~k 167 (167)
T cd07036 158 ----DDPVIFLEHK 167 (167)
T ss_pred ----CCcEEEEecC
Confidence 3899987663
No 173
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=95.27 E-value=0.099 Score=49.06 Aligned_cols=104 Identities=21% Similarity=0.260 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEecCCCCcc--------cCC-----C---CCC
Q 048725 136 QGGIFAAEGYARSS-GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRM--------IGT-----D---AFQ 198 (661)
Q Consensus 136 ~~A~~~A~Gyar~t-g~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~~--------~g~-----~---~~q 198 (661)
..+.-+|.|.+.+. +|+.+|++-=|. +...++.|..|...++|+++|.-+..... .+. . .+.
T Consensus 31 G~~~~~aiGa~~a~p~~~vv~i~GDG~-f~~~~~el~ta~~~~~~v~~vv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (153)
T PF02775_consen 31 GYALPAAIGAALARPDRPVVAITGDGS-FLMSLQELATAVRYGLPVVIVVLNNGGYGMTGGQQTPFGGGRFSGVDGKTFP 109 (153)
T ss_dssp TTHHHHHHHHHHHSTTSEEEEEEEHHH-HHHHGGGHHHHHHTTSSEEEEEEESSBSHHHHHHHHHTTSTCHHSTBTTTST
T ss_pred CCHHHhhhHHHhhcCcceeEEecCCcc-eeeccchhHHHhhccceEEEEEEeCCcceEeccccccCcCcccccccccccc
Confidence 45778899999985 777777664443 44448999999999999999987554211 011 0 145
Q ss_pred CCCHHHHhhcccccccccCCc--CcHHHHHHHHHHHhhcCCCceEEEEe
Q 048725 199 ETPIVEVTRSITKHNYLVLDV--DDIPRIVREAFLLATSGRPGPVLIDV 245 (661)
Q Consensus 199 ~~~~~~~~~~itk~~~~v~~~--~~i~~~i~~A~~~a~s~~~GPV~I~i 245 (661)
..|...+.+.+--...++.++ +++.+.+++|++ ..||+.|+|
T Consensus 110 ~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~~-----~~gp~vIeV 153 (153)
T PF02775_consen 110 NPDFAALAEAFGIKGARVTTPDPEELEEALREALE-----SGGPAVIEV 153 (153)
T ss_dssp TCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHHH-----SSSEEEEEE
T ss_pred cCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHHh-----CCCcEEEEc
Confidence 567778888874446677777 888888877772 259999986
No 174
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=94.86 E-value=0.47 Score=45.07 Aligned_cols=121 Identities=17% Similarity=0.162 Sum_probs=78.0
Q ss_pred CeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEE-CCcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhc
Q 048725 493 RQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDID-GDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYK 571 (661)
Q Consensus 493 ~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~-GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~ 571 (661)
.+++....- +.+.-+|-|.+.+. + +.||++ ...++.-.+..|.+|...+.|+++|.-+...-..- .
T Consensus 36 i~~i~~rhE---~~A~~mA~gyar~t-~-~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~~~~~~--------~ 102 (162)
T cd07038 36 LRWVGNCNE---LNAGYAADGYARVK-G-LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVGAPSTKAQA--------S 102 (162)
T ss_pred ceEEeeCCH---HHHHHHHHHHHHhh-C-CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEecCCCccccc--------c
Confidence 455544332 23566777877776 4 545444 56677777999999999999999998765421100 0
Q ss_pred ccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh----CCCcEEEEEE
Q 048725 572 ANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD----TPGPYLLDVI 631 (661)
Q Consensus 572 ~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~----~~gp~lIeV~ 631 (661)
....+..++.+. ..|...+.+.+--+..+|.+++++...+++|+. .+||++||+.
T Consensus 103 ~~~~~~~~~~~~-----~~d~~~~~~~~tk~~~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP 161 (162)
T cd07038 103 GLLLHHTLGDGD-----FDVFLKMFEEITCAAARLTDPENAAEEIDRVLRTALRESRPVYIEIP 161 (162)
T ss_pred ccceeecccccc-----hHHHHHHHHhheeEEEEeCCHHHHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 000011111100 015778888888889999999998887777764 4589999873
No 175
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=94.86 E-value=0.045 Score=57.56 Aligned_cols=95 Identities=23% Similarity=0.263 Sum_probs=55.0
Q ss_pred CcccchHHHHHHhhhhCCCCcEEEEECCcccccC-hHHHHHHHHcCCC----eEEEEEeCCcchhHHHHHHHhhcccccc
Q 048725 502 GAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMN-VQELATIKVEKLP----IKILLLNNQHLGMVMQWEDRFYKANRAH 576 (661)
Q Consensus 502 g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~-~~eL~ta~~~~lp----v~ivV~NN~g~g~~~~~~~~~~~~~~~~ 576 (661)
|-+||+++-|.||++.+|+..|+|++|||.+--. ...=|.+.++=-| .++=|+.=+||-|-. .
T Consensus 140 GELGYaLshA~GA~~DnPdliv~~vvGDGEaETGplA~sWh~~kflnP~~dGaVLPILhLNG~KI~~------------p 207 (379)
T PF09364_consen 140 GELGYALSHAFGAVFDNPDLIVACVVGDGEAETGPLAASWHSNKFLNPATDGAVLPILHLNGYKISN------------P 207 (379)
T ss_dssp SSTS-HHHHHHHHHTT-TT-EEEEEEETTGGGSHHHHHHGGGGGSS-TTTS-EEEEEEEE-SBSSSS------------B
T ss_pred cchhhHHHHHhhcccCCCCeEEEEEecCCcccCCcccccccccceeCcccCceeeceEEecCccccC------------C
Confidence 6899999999999999999999999999997654 2333333333111 222233323566520 1
Q ss_pred cccCCCCCcccCCccHHHHHhHcCCCEeeeCC--HHHHH
Q 048725 577 TYLGDPSRESEIFPNMLKFAEACGIPGAQVTR--KADLR 613 (661)
Q Consensus 577 ~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~--~~el~ 613 (661)
+.++.-. .-++.++-+++|.+-+.|+. ++++.
T Consensus 208 Til~r~~-----~~eL~~lf~G~Gy~p~~Veg~dp~~~h 241 (379)
T PF09364_consen 208 TILARMS-----DEELEALFRGYGYEPIFVEGDDPADMH 241 (379)
T ss_dssp -HHHHS------HHHHHHHHHHTTEEEEEEE---HHHHH
T ss_pred eEeeecC-----HHHHHHHHHhCCCeEEEEecCCHHHHH
Confidence 1111100 03688888999998887754 54443
No 176
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=94.78 E-value=0.28 Score=45.67 Aligned_cols=102 Identities=21% Similarity=0.213 Sum_probs=68.5
Q ss_pred hHHHHHHhhhhCCCCcEEEEE-CCcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCc
Q 048725 507 GLPAAIGAAVANPDAIIVDID-GDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRE 585 (661)
Q Consensus 507 ~lpaAiGaala~p~~~vv~i~-GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~ 585 (661)
+..+|.|++.+.. +.++.+. |.|. ...+..|.++...++|+++++-..+..+. ... .+.
T Consensus 47 a~~~A~G~a~~~~-~~v~~~~~gpg~-~~~~~~l~~a~~~~~Pvl~i~~~~~~~~~---------~~~----~~q----- 106 (154)
T cd06586 47 AAGAAAGYARAGG-PPVVIVTSGTGL-LNAINGLADAAAEHLPVVFLIGARGISAQ---------AKQ----TFQ----- 106 (154)
T ss_pred HHHHHHHHHHhhC-CEEEEEcCCCcH-HHHHHHHHHHHhcCCCEEEEeCCCChhhh---------ccC----ccc-----
Confidence 6788889888764 5555555 6654 34577788999999998887755443211 000 011
Q ss_pred ccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh----CCCcEEEEEE
Q 048725 586 SEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD----TPGPYLLDVI 631 (661)
Q Consensus 586 ~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~----~~gp~lIeV~ 631 (661)
..|...+.+.+.....++.+.+++.+.+.+++. .+||++|++.
T Consensus 107 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~ip 153 (154)
T cd06586 107 ---SMFDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYASQGPVVVRLP 153 (154)
T ss_pred ---ccCHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcc
Confidence 146777888888878888888887776666653 4789999863
No 177
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=94.76 E-value=0.14 Score=49.02 Aligned_cols=106 Identities=19% Similarity=0.151 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEecCCCCc-ccC--------C-----CCCCCCC
Q 048725 137 GGIFAAEGYARSS-GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRR-MIG--------T-----DAFQETP 201 (661)
Q Consensus 137 ~A~~~A~Gyar~t-g~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~-~~g--------~-----~~~q~~~ 201 (661)
.+.-+|.|.+.+. .++.+|++-=| ++.-.+..+..|...++|+++|.-+.... ... . ..+...|
T Consensus 52 ~~lp~AiGa~la~~~~~vv~i~GDG-~f~~~~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d 130 (172)
T cd02004 52 VGLGYAIAAALARPDKRVVLVEGDG-AFGFSGMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLGLPVTTLLPDTR 130 (172)
T ss_pred chHHHHHHHHHhCCCCeEEEEEcch-hhcCCHHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccCCCceeccCCCCC
Confidence 3666788888776 46777765434 23334688899999999988887554321 110 0 0123446
Q ss_pred HHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 202 IVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 202 ~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
...+.+.+--...++.+++++.+.+++|+ +. +||+.|++..|
T Consensus 131 ~~~la~a~G~~~~~v~~~~el~~al~~a~----~~-~~p~liev~i~ 172 (172)
T cd02004 131 YDLVAEAFGGKGELVTTPEELKPALKRAL----AS-GKPALINVIID 172 (172)
T ss_pred HHHHHHHCCCeEEEECCHHHHHHHHHHHH----Hc-CCCEEEEEEcC
Confidence 66677766555667777666665555554 33 58999998653
No 178
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=94.73 E-value=0.54 Score=44.71 Aligned_cols=115 Identities=11% Similarity=0.014 Sum_probs=73.9
Q ss_pred CCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhh
Q 048725 492 PRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFY 570 (661)
Q Consensus 492 p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~ 570 (661)
..+++....- ..+.-+|-|.+.+. +++.|+++.=| ++...+..|.+|...+.|+++|.-+-.....
T Consensus 35 ~i~~v~~rhE---~~A~~mAdgyar~s-g~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~~~~~--------- 101 (162)
T cd07037 35 EFRLHVRVDE---RSAAFFALGLAKAS-GRPVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLTADRPPELR--------- 101 (162)
T ss_pred CceEEeccCh---HHHHHHHHHHHHhh-CCCEEEEECCchHHHHHhHHHHHHHhcCCCEEEEECCCCHHhc---------
Confidence 3455554433 23566788877776 46666555443 5555688999999999999998864332100
Q ss_pred cccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHH------HHHHHHHHHh-----CCCcEEEEEE
Q 048725 571 KANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKAD------LRAAIQTMLD-----TPGPYLLDVI 631 (661)
Q Consensus 571 ~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~e------l~~al~~a~~-----~~gp~lIeV~ 631 (661)
+.. .+ + ..|...+.+.+--+..+++++++ +...+++|+. ..||++||+.
T Consensus 102 ~~~----~~---q-----~~d~~~l~~~vtk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 102 GTG----AN---Q-----TIDQVGLFGDYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred CCC----CC---c-----ccchhhhccceeeEEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 110 01 1 14666777777777888888777 6666666664 4689999975
No 179
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=94.60 E-value=0.75 Score=44.25 Aligned_cols=106 Identities=19% Similarity=0.267 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEecCCCCc-ccC---C----C----CC---CCCC
Q 048725 137 GGIFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRR-MIG---T----D----AF---QETP 201 (661)
Q Consensus 137 ~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~-~~g---~----~----~~---q~~~ 201 (661)
.+.-+|.|++.+..|+.+|++-=|- +.-.+..|..|...++|+++|.-+.... ... . . .+ ...|
T Consensus 55 ~~l~~aiGa~la~~~~Vv~i~GDGs-f~m~~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~~~~~~~~~~~~~~~d 133 (175)
T cd02009 55 GTLSTALGIALATDKPTVLLTGDLS-FLHDLNGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASFEDEFERLFGTPQGLD 133 (175)
T ss_pred hHHHHHHHHHhcCCCCEEEEEehHH-HHHhHHHHHhccccCCCeEEEEEECCCCchheeccCCcccchhhhhhcCCCCCC
Confidence 3666888988887788888654333 3333688999999999999888654321 000 0 0 01 1345
Q ss_pred HHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 202 IVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 202 ~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
...+.+.+--...++.+++++...+++|++ ..||..|++..|
T Consensus 134 ~~~lA~a~G~~~~~v~~~~el~~al~~a~~-----~~~p~lIev~v~ 175 (175)
T cd02009 134 FEHLAKAYGLEYRRVSSLDELEQALESALA-----QDGPHVIEVKTD 175 (175)
T ss_pred HHHHHHHcCCCeeeCCCHHHHHHHHHHHHh-----CCCCEEEEEeCC
Confidence 556666664445677788888777777764 258999998754
No 180
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=94.55 E-value=0.55 Score=52.32 Aligned_cols=147 Identities=18% Similarity=0.118 Sum_probs=91.0
Q ss_pred CCcHHHHHHHHHHHCCCC--EEEecc-------CCC--cHHHHHHHHcCCCCeEEc-cCChhHHHHHHHHHHHHhCCcEE
Q 048725 87 PRKGADILVEALERQGVT--DVFAYP-------GGA--SMEIHQALTRSNNIRNVL-PRHEQGGIFAAEGYARSSGKPGI 154 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~--~vFg~P-------G~~--~~~l~~aL~~~~~i~~v~-~~hE~~A~~~A~Gyar~tg~~gv 154 (661)
.++..+++.+.|.++.-+ .||.+- |.. ...|.+.+. + =|++. ..-|++++.+|.|.|....||-|
T Consensus 141 ~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fg--p-~R~id~gIaEq~~vg~AaGlA~~G~rPiv 217 (464)
T PRK11892 141 TMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFG--A-RRVIDTPITEHGFAGIGVGAAFAGLKPIV 217 (464)
T ss_pred chHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhC--c-cceeecCccHHHHHHHHHHHHhCCCEEEE
Confidence 455666666666555432 244333 211 234555542 1 23444 37999999999999998777777
Q ss_pred EEEccchhhHHHHHHHH-Hhh--------hCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhccccccc-ccCCcCcHHH
Q 048725 155 CIATSGPGATNLVSGLA-DAL--------LDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNY-LVLDVDDIPR 224 (661)
Q Consensus 155 ~~~tsGpG~~N~l~gl~-~A~--------~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~-~v~~~~~i~~ 224 (661)
.+.++ --+..++.-|. ++. +.+.||+++..+-+... .+.+|..+...+++.+-...+ .+.++.++..
T Consensus 218 ~~~~~-~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~--~G~hhs~~d~a~~~~iPgl~V~~P~d~~d~~~ 294 (464)
T PRK11892 218 EFMTF-NFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAAR--VAAQHSQDYAAWYSHIPGLKVVAPYSAADAKG 294 (464)
T ss_pred EEehH-HHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCC--CCCccccCHHHHHhhCCCCEEEEeCCHHHHHH
Confidence 64332 12334444443 233 67899999865443322 345777788899999876554 3567778888
Q ss_pred HHHHHHHHhhcCCCceEEEE
Q 048725 225 IVREAFLLATSGRPGPVLID 244 (661)
Q Consensus 225 ~i~~A~~~a~s~~~GPV~I~ 244 (661)
+++.|++. ++|||+.
T Consensus 295 ll~~ai~~-----~~Pv~il 309 (464)
T PRK11892 295 LLKAAIRD-----PNPVIFL 309 (464)
T ss_pred HHHHHhhC-----CCcEEEE
Confidence 77777643 4899984
No 181
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=94.39 E-value=0.81 Score=44.88 Aligned_cols=108 Identities=13% Similarity=0.199 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEecCCCCc-c--------cCC----CCCCCCCHH
Q 048725 138 GIFAAEGYARSS-GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRR-M--------IGT----DAFQETPIV 203 (661)
Q Consensus 138 A~~~A~Gyar~t-g~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~-~--------~g~----~~~q~~~~~ 203 (661)
+.-+|.|.+.+. +|+.+|++-=|- +.-.+..|..|...++|+++|.-+.... + .+. ..+...|..
T Consensus 58 ~lpaaiGa~la~p~r~vv~i~GDG~-f~m~~~eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~d~~ 136 (196)
T cd02013 58 ALPAIIGAKAAAPDRPVVAIAGDGA-WGMSMMEIMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESESFA 136 (196)
T ss_pred HHHHHHHHHHhCCCCcEEEEEcchH-HhccHHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCCcccccCCCCCHH
Confidence 566899988775 677887765443 3334688999999999999998543321 0 010 022345677
Q ss_pred HHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 204 EVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 204 ~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
.+.+.+--...++.+++++...+++|+..... .||+.|++..|
T Consensus 137 ~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~--~~p~liev~v~ 179 (196)
T cd02013 137 KIAEACGAKGITVDKPEDVGPALQKAIAMMAE--GKTTVIEIVCD 179 (196)
T ss_pred HHHHHCCCEEEEECCHHHHHHHHHHHHhcCCC--CCeEEEEEEeC
Confidence 77777766667888989988888888764332 58999999876
No 182
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=94.27 E-value=0.52 Score=46.47 Aligned_cols=109 Identities=13% Similarity=0.106 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEecCCCCccc---------CC--------C----
Q 048725 138 GIFAAEGYARSS-GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMI---------GT--------D---- 195 (661)
Q Consensus 138 A~~~A~Gyar~t-g~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~~~---------g~--------~---- 195 (661)
+.-+|.|.+.+. +|+.||++-=|- +.=.+..|..|...++|+++|.-+...... +. .
T Consensus 62 ~lpaaiGa~la~p~~~vv~i~GDG~-f~m~~~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~~~~ 140 (202)
T cd02006 62 TVPAALGVAAADPDRQVVALSGDYD-FQFMIEELAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDYQVNLAFENINSS 140 (202)
T ss_pred hhHHHHhHHhhCCCCeEEEEEeChH-hhccHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCcccccccccccccc
Confidence 455788887776 567777654443 333347888999999999999865432110 00 0
Q ss_pred --CCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 196 --AFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 196 --~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
..+..|...+.+.+--...++.+++++...+++|+...... .||+.|++..|
T Consensus 141 ~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~~-~~p~liev~i~ 194 (202)
T cd02006 141 ELGGYGVDHVKVAEGLGCKAIRVTKPEELAAAFEQAKKLMAEH-RVPVVVEAILE 194 (202)
T ss_pred ccCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHhcccC-CCcEEEEEEec
Confidence 00135666777777666778889899888888887653222 48999999865
No 183
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=94.10 E-value=0.61 Score=44.07 Aligned_cols=104 Identities=16% Similarity=0.197 Sum_probs=68.9
Q ss_pred cchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHH-HcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCC
Q 048725 505 GFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIK-VEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPS 583 (661)
Q Consensus 505 G~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~-~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~ 583 (661)
+.+.++|-|+.++ .++.+|++.+=| +...++.|.++. .+++|+++|+-.-+.++-....| ...+.
T Consensus 44 e~aa~~aAg~~~~-~~~~~v~~~~sG-~gn~~~~l~~a~~~~~~Pvl~i~g~rg~~~~~~~~q----------~~~g~-- 109 (157)
T TIGR03845 44 EEGVGICAGAYLA-GKKPAILMQSSG-LGNSINALASLNKTYGIPLPILASWRGVYKEKIPAQ----------IPMGR-- 109 (157)
T ss_pred HHHHHHHHHHHHh-cCCcEEEEeCCc-HHHHHHHHHHHHHcCCCCEEEEEeccCCCCCCCccc----------cchhh--
Confidence 4577777777776 467888888877 556689999999 99999999996665543211000 00000
Q ss_pred CcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh----CCCcEEEEE
Q 048725 584 RESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD----TPGPYLLDV 630 (661)
Q Consensus 584 ~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~----~~gp~lIeV 630 (661)
. -...-+.+++++.++++++++ .++++|++ .+||+.|-+
T Consensus 110 ------~-~~~~l~~~~i~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~ 152 (157)
T TIGR03845 110 ------A-TPKLLDTLGIPYTIPREPEEA-KLIEKAISDAYENSRPVAALL 152 (157)
T ss_pred ------h-hHHHHHHcCCCeEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEE
Confidence 0 011223456678999999999 88887774 458987754
No 184
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=94.08 E-value=1.5 Score=42.32 Aligned_cols=116 Identities=20% Similarity=0.247 Sum_probs=73.2
Q ss_pred CeEEccCChhH---HHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEecCCCCccc--------CC
Q 048725 127 IRNVLPRHEQG---GIFAAEGYARSS-GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMI--------GT 194 (661)
Q Consensus 127 i~~v~~~hE~~---A~~~A~Gyar~t-g~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~~~--------g~ 194 (661)
-+++....=.+ +.-+|.|.+.+. +++.+|++-=|.-..+ +..+..|...++|+++|.-+...... +.
T Consensus 42 ~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i~GDG~f~~~-~~el~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~ 120 (178)
T cd02014 42 QRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALSGDGGFAML-MGDLITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQ 120 (178)
T ss_pred CcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEEEcchHHHhh-HHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcC
Confidence 34454433233 555678877765 6788887655555555 67788899999999999865542110 10
Q ss_pred C----CCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 195 D----AFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 195 ~----~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
. .++..|...+.+.+--....+.+++++...+++|++ . .||+.|++..|
T Consensus 121 ~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~~l~~a~~----~-~~p~liev~~~ 173 (178)
T cd02014 121 PEFGVDLPNPDFAKIAEAMGIKGIRVEDPDELEAALDEALA----A-DGPVVIDVVTD 173 (178)
T ss_pred CceeccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHh----C-CCCEEEEEEeC
Confidence 0 123456667777664445577777777666666554 2 48999999764
No 185
>PRK12753 transketolase; Reviewed
Probab=94.07 E-value=0.35 Score=56.46 Aligned_cols=116 Identities=16% Similarity=0.056 Sum_probs=82.1
Q ss_pred eEE-ccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEecCCCCcccCC--CCCCCCCHHH
Q 048725 128 RNV-LPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGT--DAFQETPIVE 204 (661)
Q Consensus 128 ~~v-~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~--~~~q~~~~~~ 204 (661)
+++ .-.-|++++.+|-|.|.-.|...+| .|..+=+.-+...|-.+.+.+.||+++........ |. ..+|-+.+..
T Consensus 403 r~i~~GIaEq~mv~~aaGlA~~~G~~P~~-~tf~~F~~r~~~qir~~a~~~l~V~~v~thdg~~~-G~DG~THq~iedla 480 (663)
T PRK12753 403 NYIHYGVREFGMTAIANGIAHHGGFVPYT-ATFLMFVEYARNAARMAALMKARQIMVYTHDSIGL-GEDGPTHQPVEQLA 480 (663)
T ss_pred CEEEeeecHHHHHHHHHHHHHhCCCeEEE-EehHHHHHHHHHHHHHHHhcCCCeEEEEeCCCccc-CCCCcccccHHHHH
Confidence 444 3478999999999999977754454 57888888888999888999999999844333222 32 3578888899
Q ss_pred HhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 205 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 205 ~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
++|.+-... |-.|.+.. .+..+++.|.....||+||.+++.
T Consensus 481 ~lR~iPn~~--v~~PaD~~-E~~~~~~~al~~~~gP~~irl~R~ 521 (663)
T PRK12753 481 SLRLTPNFS--TWRPCDQV-EAAVAWKLAIERHNGPTALILSRQ 521 (663)
T ss_pred HHhcCCCCE--EEccCCHH-HHHHHHHHHHhcCCCCEEEEecCC
Confidence 999887544 33344432 244555666554469999999975
No 186
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=94.06 E-value=0.34 Score=57.13 Aligned_cols=93 Identities=17% Similarity=0.217 Sum_probs=62.1
Q ss_pred EEEEECCcccccC--hHH-HHHHHHcCCC---eEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHH
Q 048725 523 IVDIDGDGSFIMN--VQE-LATIKVEKLP---IKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFA 596 (661)
Q Consensus 523 vv~i~GDGsf~~~--~~e-L~ta~~~~lp---v~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A 596 (661)
.|++-||.+|-=- ..| |..+.-.+.+ .+.||.||+ +|+... |.. .-.......+|
T Consensus 650 pi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNq-iGftT~-----------------p~~-~Rss~y~td~a 710 (1228)
T PRK12270 650 PILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQ-VGFTTA-----------------PES-SRSSEYATDVA 710 (1228)
T ss_pred EEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecC-cccccC-----------------ccc-cccchhhHHHH
Confidence 5778899998542 333 4445556777 889999998 776411 100 00012345688
Q ss_pred hHcCCCEeee--CCHHHHHHHHHHHHh----CCCcEEEEEEeCC
Q 048725 597 EACGIPGAQV--TRKADLRAAIQTMLD----TPGPYLLDVIFPH 634 (661)
Q Consensus 597 ~a~G~~~~~v--~~~~el~~al~~a~~----~~gp~lIeV~~~~ 634 (661)
++++++...| ++++....+.+-|++ -++++|||+++-+
T Consensus 711 k~~~~PifhVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvcYR 754 (1228)
T PRK12270 711 KMIQAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYR 754 (1228)
T ss_pred hhcCCCEEeECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEe
Confidence 8999999999 466666666665554 4899999999953
No 187
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=94.01 E-value=0.42 Score=46.08 Aligned_cols=105 Identities=22% Similarity=0.268 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEecCCCCcc-c--------CCC---CCCCCCHHH
Q 048725 138 GIFAAEGYARSS-GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRM-I--------GTD---AFQETPIVE 204 (661)
Q Consensus 138 A~~~A~Gyar~t-g~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~~-~--------g~~---~~q~~~~~~ 204 (661)
+.-+|.|.+.+. +++.+|++-=|.-.. ....|..|...++|+++|.-+..... + +.. .++..|...
T Consensus 53 ~lp~aiGa~la~~~~~vv~i~GDG~f~m-~~~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~ 131 (177)
T cd02010 53 ALPGAIGAKLVYPDRKVVAVSGDGGFMM-NSQELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGRDSGVDFGNPDFVK 131 (177)
T ss_pred HHHHHHHHHHhCCCCcEEEEEcchHHHh-HHHHHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCCcccCcCCCCCHHH
Confidence 344688888776 567777764443332 34678889999999999975443110 0 000 112346666
Q ss_pred HhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 205 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 205 ~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
+.+.+--...++.+++++...+++|+. ..||..|+++.|
T Consensus 132 ~a~a~G~~~~~v~~~~el~~al~~a~~-----~~~p~liev~~~ 170 (177)
T cd02010 132 YAESFGAKGYRIESADDLLPVLERALA-----ADGVHVIDCPVD 170 (177)
T ss_pred HHHHCCCEEEEECCHHHHHHHHHHHHh-----CCCCEEEEEEec
Confidence 776665556678888888777777764 258999999876
No 188
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=93.78 E-value=2.1 Score=40.35 Aligned_cols=136 Identities=13% Similarity=0.015 Sum_probs=79.0
Q ss_pred CEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH-HHHHHHHhhhC-CCcEE
Q 048725 104 TDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATN-LVSGLADALLD-SVPLV 181 (661)
Q Consensus 104 ~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N-~l~gl~~A~~~-~iPll 181 (661)
..|.+=.|.....++... ..+ -+++..--=..+.-+|.|.+.+..++.+|++ |=|... .+..+..+... ++|++
T Consensus 15 ~~vv~d~G~~~~~~~~~~-~~~-~~~~~~gsmG~~lp~AiGa~~a~~~~Vv~i~--GDG~f~m~~~el~t~~~~~~~~i~ 90 (157)
T cd02001 15 TPIVSTTGYASRELYDVQ-DRD-GHFYMLGSMGLAGSIGLGLALGLSRKVIVVD--GDGSLLMNPGVLLTAGEFTPLNLI 90 (157)
T ss_pred CEEEeCCCHhHHHHHHhh-cCC-CCEEeecchhhHHHHHHHHHhcCCCcEEEEE--CchHHHhcccHHHHHHHhcCCCEE
Confidence 345555565544442221 222 3444322222244578888887777777765 444442 34566666666 59999
Q ss_pred EEecCCCCc-ccC-CCCCC-CCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 182 AITGQVPRR-MIG-TDAFQ-ETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 182 ~ItG~~p~~-~~g-~~~~q-~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
+|.-+.... +.+ +...+ ..|...+.+.+--...++.+++++.+.+++|+. ..||..|++..+
T Consensus 91 ~vV~nN~~~g~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~vi~v~i~ 155 (157)
T cd02001 91 LVVLDNRAYGSTGGQPTPSSNVNLEAWAAACGYLVLSAPLLGGLGSEFAGLLA-----TTGPTLLHAPIA 155 (157)
T ss_pred EEEEeCccccccCCcCCCCCCCCHHHHHHHCCCceEEcCCHHHHHHHHHHHHh-----CCCCEEEEEEec
Confidence 998655421 111 11111 456677777765556677787777777777664 258999998754
No 189
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=93.67 E-value=0.4 Score=52.70 Aligned_cols=117 Identities=15% Similarity=0.191 Sum_probs=68.7
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEcCCcc-chHHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCCcHHHHHhh
Q 048725 274 EPSEVHLEQIVRLISESKKPVLYVGGGCL-NSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAV 352 (661)
Q Consensus 274 ~~~~~~l~~~~~~L~~AkrPvIv~G~g~~-~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l 352 (661)
...++.++.+++.|+++++|+++.|+... .....+.+|++.+|..+- ........+..+.+.. .|..+. ...++.
T Consensus 54 isWdeAl~~ia~~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~--~g~~~~-~~~di~ 129 (415)
T cd02761 54 VSLEEAIEKAAEILKEAKRPLFYGLGTTVCEAQRAGIELAEKLGAIID-HAASVCHGPNLLALQD--SGWPTT-TLGEVK 129 (415)
T ss_pred CCcHHHHHHHHHHHHhhcCCEEEEcccchHHHHHHHHHHHHHHCCCcc-ccccccccchHHHHHh--CCCccc-cHHHHH
Confidence 45789999999999999999887444333 345677899999997432 1111222222121111 122111 122333
Q ss_pred hcCCEEEEeCCCCCCCcCCcc-c------c-----cCCCCeEEEEcCCchhhcc
Q 048725 353 DKSDLLLAFGVRFDDRVTGKL-E------A-----FASRAKIVHIDIDSAEIGK 394 (661)
Q Consensus 353 ~~aDlvL~vG~~~~~~~t~~~-~------~-----~~~~~~vi~Id~d~~~i~~ 394 (661)
+++|+||.+|+.+.......+ . . ...+.|+|.||.......+
T Consensus 130 ~~ad~il~~G~n~~~~~p~~~~~~~~~~~~~~~~~~~~g~kli~idp~~t~ta~ 183 (415)
T cd02761 130 NRADVIVYWGTNPMHAHPRHMSRYSVFPRGFFREGGREDRTLIVVDPRKSDTAK 183 (415)
T ss_pred hcCCEEEEEcCCccccccHHhhhhhhhhhhhccccCCCCCEEEEEcCCCcchhh
Confidence 589999999998754322111 0 1 1245689999987766543
No 190
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=93.59 E-value=0.36 Score=47.74 Aligned_cols=138 Identities=14% Similarity=0.089 Sum_probs=82.2
Q ss_pred EEEeccCCCcHHHHHHHHcCCCCeEEccCCh---hHHHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCcE
Q 048725 105 DVFAYPGGASMEIHQALTRSNNIRNVLPRHE---QGGIFAAEGYARSS-GKPGICIATSGPGATNLVSGLADALLDSVPL 180 (661)
Q Consensus 105 ~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE---~~A~~~A~Gyar~t-g~~gv~~~tsGpG~~N~l~gl~~A~~~~iPl 180 (661)
.++.=-|.....+...+.-...-+++....= .-+.-+|.|.+.+. +++.+|++-=| ++.-....|..|...++|+
T Consensus 17 ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~gsmG~~lpaAiGa~la~p~~~vv~i~GDG-sf~m~~~eL~Ta~~~~lpv 95 (205)
T cd02003 17 VVINAAGSLPGDLHKLWRARTPGGYHLEYGYSCMGYEIAAGLGAKLAKPDREVYVLVGDG-SYLMLHSEIVTAVQEGLKI 95 (205)
T ss_pred EEEECCCcchHHHHHhCCcCCCCcEEcCCCcchhhhHHHHHHHHHHhCCCCeEEEEEccc-hhhccHHHHHHHHHcCCCC
Confidence 3444446655555544432222445543221 22445788877665 56777765444 3333456788899999999
Q ss_pred EEEecCCCCcc--------cCCC------------------CCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhh
Q 048725 181 VAITGQVPRRM--------IGTD------------------AFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLAT 234 (661)
Q Consensus 181 l~ItG~~p~~~--------~g~~------------------~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~ 234 (661)
++|.-+..... .+.. ..+..|...+.+.+--...++.+++++...+++|++
T Consensus 96 ~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~--- 172 (205)
T cd02003 96 IIVLFDNHGFGCINNLQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVKTIEELKAALAKAKA--- 172 (205)
T ss_pred EEEEEECCccHHHHHHHHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEECCHHHHHHHHHHHHh---
Confidence 88886543210 0000 012356667777765456678888888777777763
Q ss_pred cCCCceEEEEeccc
Q 048725 235 SGRPGPVLIDVPKD 248 (661)
Q Consensus 235 s~~~GPV~I~iP~d 248 (661)
.+||+.|++..|
T Consensus 173 --~~gp~lIeV~v~ 184 (205)
T cd02003 173 --SDRTTVIVIKTD 184 (205)
T ss_pred --CCCCEEEEEEee
Confidence 258999999876
No 191
>PRK12754 transketolase; Reviewed
Probab=93.58 E-value=0.8 Score=53.36 Aligned_cols=116 Identities=16% Similarity=0.046 Sum_probs=82.1
Q ss_pred eEE-ccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEecCCCCcccCC--CCCCCCCHHH
Q 048725 128 RNV-LPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGT--DAFQETPIVE 204 (661)
Q Consensus 128 ~~v-~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~--~~~q~~~~~~ 204 (661)
++| .-.-|++++.+|-|.|...|...++ .|..+=+.-+...|-.+.+.+.|+++|........ |. ..+|-+.+..
T Consensus 403 r~i~~GIaE~~Mv~iaaGlA~~~G~~Pf~-~tf~~F~~r~~~qir~~a~~~l~V~~v~th~gi~~-G~DG~THq~iEdla 480 (663)
T PRK12754 403 NYIHYGVREFGMTAIANGIALHGGFLPYT-STFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGL-GEDGPTHQPVEQVA 480 (663)
T ss_pred CeEeeccchhhHHHHHhhHHhcCCCeEEE-EeeHHHHHHHHHHHHHHHHcCCCeEEEEECCcccc-CCCCCCcccHHHHH
Confidence 544 4489999999999999977754444 57788778888999888999999988764333222 33 3578888899
Q ss_pred HhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 205 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 205 ~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
++|.+.... |-+|.+..+ +..+++.+.....||+||.++..
T Consensus 481 ~lR~iPn~~--V~~PaD~~E-~~~~~~~a~~~~~gP~yirl~R~ 521 (663)
T PRK12754 481 SLRVTPNMS--TWRPCDQVE-SAVAWKYGVERQDGPTALILSRQ 521 (663)
T ss_pred HHhcCCCcE--EecCCCHHH-HHHHHHHHHhCCCCCEEEEeCCC
Confidence 999886543 334444332 34555666655569999999975
No 192
>PTZ00089 transketolase; Provisional
Probab=93.49 E-value=0.45 Score=55.62 Aligned_cols=116 Identities=16% Similarity=0.134 Sum_probs=80.0
Q ss_pred eEEc-cCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEecCCCCcccCC--CCCCCCCHHH
Q 048725 128 RNVL-PRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGT--DAFQETPIVE 204 (661)
Q Consensus 128 ~~v~-~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~--~~~q~~~~~~ 204 (661)
|++. -.-|++++.+|.|.|+..|...+| .|..+=+.=+...|..+...+.||+++....... .|. ..+|-+.+..
T Consensus 404 rfi~~GIaEq~mv~~AaGlA~~~G~~P~~-~tf~~Fl~Ra~dqir~~al~~lpV~~v~thdg~~-~g~DG~THq~iedia 481 (661)
T PTZ00089 404 RYIRFGVREHAMCAIMNGIAAHGGFIPFG-ATFLNFYGYALGAVRLAALSHHPVIYVATHDSIG-LGEDGPTHQPVETLA 481 (661)
T ss_pred CeeeeeecHHHHHHHHHHHHHcCCCeEEE-EehHHHHHHHHHHHHHHHhcCCCeEEEEeCCcee-cCCCCCCcccHHHHH
Confidence 4443 478999999999999966743333 4777878888899999999999999885222211 232 3578888889
Q ss_pred HhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 205 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 205 ~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
++|.+.-.. |..|.+..+ +..+++.|.....||++|.+|..
T Consensus 482 ~lR~iPn~~--V~~PaD~~E-~~~~l~~al~~~~gP~~irl~R~ 522 (661)
T PTZ00089 482 LLRATPNLL--VIRPADGTE-TSGAYALALANAKTPTILCLSRQ 522 (661)
T ss_pred HHhcCCCcE--EEecCCHHH-HHHHHHHHHHcCCCCEEEEecCC
Confidence 999886543 334444332 34455555533459999999976
No 193
>PLN02790 transketolase
Probab=93.44 E-value=0.98 Score=52.81 Aligned_cols=115 Identities=18% Similarity=0.185 Sum_probs=79.8
Q ss_pred eEEc-cCChhHHHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEecCCCCcccCC--CCCCCCCHH
Q 048725 128 RNVL-PRHEQGGIFAAEGYARSS-GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGT--DAFQETPIV 203 (661)
Q Consensus 128 ~~v~-~~hE~~A~~~A~Gyar~t-g~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~--~~~q~~~~~ 203 (661)
|++. -.-|++++.+|-|.|+.. |..-+| .|..+=++-+..++..+...+.|++++....... .|. ..+|-+.+.
T Consensus 393 Rfi~~GIaEq~mv~~AaGlA~~G~G~~P~~-~tf~~F~~~~~~~ir~~al~~lpV~~v~thdg~~-~G~DG~THq~iedl 470 (654)
T PLN02790 393 RNVRFGVREHGMGAICNGIALHSSGLIPYC-ATFFVFTDYMRAAMRLSALSEAGVIYVMTHDSIG-LGEDGPTHQPIEHL 470 (654)
T ss_pred CeEEeeechHHHHHHHHHHHhcCCCcEEEE-EecHHHHHHHHHHHHHHHhcCCCeEEEEECCcee-ecCCCCCcccHHHH
Confidence 4444 488999999999999975 654444 4777766677788888899999988886332222 233 357888889
Q ss_pred HHhhccccccc-ccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 204 EVTRSITKHNY-LVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 204 ~~~~~itk~~~-~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
.++|.+....+ ++.+..++.. +++.|.....||++|.+|+.
T Consensus 471 a~lR~iPnl~V~~PaD~~E~~~----~l~~al~~~~gP~~irl~R~ 512 (654)
T PLN02790 471 ASLRAMPNILMLRPADGNETAG----AYKVAVTNRKRPTVLALSRQ 512 (654)
T ss_pred HHhcCCCCcEEEeCCCHHHHHH----HHHHHHHcCCCCEEEEecCC
Confidence 99998876443 3444444444 55555443459999999976
No 194
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=93.32 E-value=0.71 Score=53.95 Aligned_cols=115 Identities=14% Similarity=0.066 Sum_probs=80.4
Q ss_pred eEEc-cCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEecCCCCcccCC--CCCCCCCHHH
Q 048725 128 RNVL-PRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGT--DAFQETPIVE 204 (661)
Q Consensus 128 ~~v~-~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~--~~~q~~~~~~ 204 (661)
+++. -.-|++++.+|.|+|+..|...++ .|..+=+.-+...+..+...+.|++++....... .|. ..+|.+.+..
T Consensus 397 rfi~~GIaEq~mv~~AaGlA~~gG~~p~~-~tf~~F~~r~~~~ir~~a~~~lpV~~v~th~g~~-~G~dG~THq~iedia 474 (653)
T TIGR00232 397 NYIHYGVREFAMGAIMNGIALHGGFKPYG-GTFLMFVDYARPAIRLAALMKLPVIYVYTHDSIG-VGEDGPTHQPIEQLA 474 (653)
T ss_pred CeEeecccHHHHHHHHHHHHHcCCCeEEE-EEhHHHHHHHHHHHHHHHhcCCCEEEEEeCCccC-CCCCCcccCCHHHHH
Confidence 5444 589999999999999988865555 5777777677788888889999999887432222 222 3468888888
Q ss_pred Hhhccccccc-ccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 205 VTRSITKHNY-LVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 205 ~~~~itk~~~-~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
+++.+-.... .+.+..++..+++.|+ ....||++|.++..
T Consensus 475 ~lr~iPn~~v~~PaD~~E~~~~~~~a~----~~~~gP~~irl~r~ 515 (653)
T TIGR00232 475 SLRAIPNLSVWRPCDGNETAAAWKYAL----ESQDGPTALILSRQ 515 (653)
T ss_pred HHhcCCCCEEEeeCCHHHHHHHHHHHH----hcCCCcEEEEEcCC
Confidence 9988755432 3455555555555444 23459999999875
No 195
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=93.31 E-value=0.34 Score=52.68 Aligned_cols=129 Identities=16% Similarity=0.213 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHh---CCCeeecCCCCCCCCCCCCCCCcccCCCC--------
Q 048725 278 VHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELT---GIPVASTLMGLGSFPGTDELSLQMLGMHG-------- 344 (661)
Q Consensus 278 ~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~l---g~PV~tt~~gkg~~p~~hpl~lg~~G~~g-------- 344 (661)
...++++++|..|+|.+|+-|+|-. .+..+++|++|.| |+-|=- .-||-.-.|.|+..
T Consensus 294 ~~~~d~a~~l~~A~~ViIVPGYGmAVAqAQh~v~el~~~L~~~Gv~V~f---------aIHPVAGRMPGHMNVLLAEA~V 364 (462)
T PRK09444 294 TTAEEVAEMLKNSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRF---------GIHPVAGRLPGHMNVLLAEAKV 364 (462)
T ss_pred cCHHHHHHHHHhCCcEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEE---------EeccccccCCCcceeEEeecCC
Confidence 3456888999999999999999864 5666666666655 444411 12554444444321
Q ss_pred -------cHHHHHhhhcCCEEEEeCCCCCCCc-------C--Cc---ccccCCCCeEEEEcCCc--hhhc--c---CCCC
Q 048725 345 -------TVYANYAVDKSDLLLAFGVRFDDRV-------T--GK---LEAFASRAKIVHIDIDS--AEIG--K---NKQP 398 (661)
Q Consensus 345 -------~~~a~~~l~~aDlvL~vG~~~~~~~-------t--~~---~~~~~~~~~vi~Id~d~--~~i~--~---~~~~ 398 (661)
-++.|.-+.+.|++|++|..-.-.. + .+ ++-| +.+++|.+-.+- ..-| + ..+.
T Consensus 365 PYd~v~eMdeIN~~F~~tDvalVIGANDvVNPaA~~dp~SpIyGMPvL~v~-kAk~Viv~KRs~~~GyAGv~NpLF~~~n 443 (462)
T PRK09444 365 PYDIVLEMDEINDDFADTDTVLVIGANDTVNPAAQEDPNSPIAGMPVLEVW-KAQNVIVFKRSMNTGYAGVQNPLFFKEN 443 (462)
T ss_pred CHHHHHhHHhhccccccCCEEEEecCccCCCcccccCCCCCcCCCceeehh-hCCEEEEEeCCCCCCcCCCCCcceecCC
Confidence 1123455779999999996531111 0 01 1111 123444443221 1111 0 1233
Q ss_pred cceEeccHHHHHHHHHHH
Q 048725 399 HVSVCADLKLALKGINRI 416 (661)
Q Consensus 399 ~~~i~~D~~~~L~~L~~~ 416 (661)
..-+.+|+|+.+++|...
T Consensus 444 t~MlfGDAK~~~~~l~~~ 461 (462)
T PRK09444 444 TQMLFGDAKASVDAILKA 461 (462)
T ss_pred ceEEeccHHHHHHHHHHh
Confidence 456889999999998754
No 196
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=93.20 E-value=1.3 Score=51.45 Aligned_cols=151 Identities=14% Similarity=0.189 Sum_probs=91.5
Q ss_pred CcHHHHHHHHHHHCCC--CEEEe----ccCC-CcHHHHHHHHcCCCCeEE-ccCChhHHHHHHHHHHHHhCCcEEEEEcc
Q 048725 88 RKGADILVEALERQGV--TDVFA----YPGG-ASMEIHQALTRSNNIRNV-LPRHEQGGIFAAEGYARSSGKPGICIATS 159 (661)
Q Consensus 88 ~~gad~lv~~L~~~GV--~~vFg----~PG~-~~~~l~~aL~~~~~i~~v-~~~hE~~A~~~A~Gyar~tg~~gv~~~ts 159 (661)
++-.+++.+.|.+..- +.|+. ++++ ....|.+.. ++ |++ ...-|++++.+|.|.|...-+|-++ +.
T Consensus 310 ~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~~~~f~~~f---P~-R~~d~GIaEq~~vg~AaGlA~~G~~Pvv~--~~ 383 (617)
T TIGR00204 310 PSYSKIFSDTLCELAKKDNKIVGITPAMPEGSGLDKFSRKF---PD-RYFDVAIAEQHAVTFAAGMAIEGYKPFVA--IY 383 (617)
T ss_pred ccHHHHHHHHHHHHHhhCcCEEEEECCccCCcChHHHHHHC---cc-ccccCCccHHHHHHHHHHHHHCCCEEEEE--ec
Confidence 3455666666655432 34554 2322 222333332 32 333 3479999999999999854444443 36
Q ss_pred chhhHHHHHHH-HHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhccccccc-ccCCcCcHHHHHHHHHHHhhcCC
Q 048725 160 GPGATNLVSGL-ADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNY-LVLDVDDIPRIVREAFLLATSGR 237 (661)
Q Consensus 160 GpG~~N~l~gl-~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~-~v~~~~~i~~~i~~A~~~a~s~~ 237 (661)
.+=+.-++.-| .++...+.||+++..........-..+|.+....+++.+.-+.. .+.++.++..+++.|++. .
T Consensus 384 a~Fl~ra~dQi~~~~a~~~lpV~i~~~~~G~~g~dG~tH~~~~dia~lr~iPgl~V~~Psd~~e~~~~l~~a~~~----~ 459 (617)
T TIGR00204 384 STFLQRAYDQVVHDVCIQKLPVLFAIDRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYTGYHY----D 459 (617)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEECCCcCCCCCcccccchHHHHHhcCCCcEEEeeCCHHHHHHHHHHHHhC----C
Confidence 66666666665 44567889998875332221111234666777788888866544 456777777777766642 3
Q ss_pred CceEEEEeccc
Q 048725 238 PGPVLIDVPKD 248 (661)
Q Consensus 238 ~GPV~I~iP~d 248 (661)
+|||+|.+|..
T Consensus 460 ~~Pv~ir~~r~ 470 (617)
T TIGR00204 460 DGPIAVRYPRG 470 (617)
T ss_pred CCCEEEEEccC
Confidence 58999999975
No 197
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=93.04 E-value=0.7 Score=44.88 Aligned_cols=105 Identities=23% Similarity=0.254 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEecCCCCcc---------cCC-----CCCCCCCH
Q 048725 138 GIFAAEGYARSS-GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRM---------IGT-----DAFQETPI 202 (661)
Q Consensus 138 A~~~A~Gyar~t-g~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~~---------~g~-----~~~q~~~~ 202 (661)
+.-+|.|.+.+. +++.+|++-=| ++.-.+..|..|...++|+++|.-+..... .+. ......|.
T Consensus 55 ~lp~aiGa~la~~~~~vv~i~GDG-~f~~~~~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 133 (186)
T cd02015 55 GLPAAIGAKVARPDKTVICIDGDG-SFQMNIQELATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGRYSHTTLDSNPDF 133 (186)
T ss_pred hHHHHHHHHHhCCCCeEEEEEccc-HHhccHHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCceeeccCCCCCCH
Confidence 556788887776 46777765444 444556788999999999999886554211 000 11123566
Q ss_pred HHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 203 VEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 203 ~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
..+.+.+--...++.+.+++.+.+++|+. . .||+.|++..|
T Consensus 134 ~~~a~a~G~~~~~v~~~~el~~al~~a~~----~-~~p~liev~~~ 174 (186)
T cd02015 134 VKLAEAYGIKGLRVEKPEELEAALKEALA----S-DGPVLLDVLVD 174 (186)
T ss_pred HHHHHHCCCceEEeCCHHHHHHHHHHHHh----C-CCCEEEEEEeC
Confidence 77777776667788887777777776654 2 58999999876
No 198
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=92.85 E-value=0.94 Score=52.78 Aligned_cols=148 Identities=18% Similarity=0.260 Sum_probs=93.5
Q ss_pred cHHHHHHHHHHHCC--CCEEEec----cCCCcHHHHHHHHc-CCCCeEEc-cCChhHHHHHHHHHHHHhCCcEEEEEccc
Q 048725 89 KGADILVEALERQG--VTDVFAY----PGGASMEIHQALTR-SNNIRNVL-PRHEQGGIFAAEGYARSSGKPGICIATSG 160 (661)
Q Consensus 89 ~gad~lv~~L~~~G--V~~vFg~----PG~~~~~l~~aL~~-~~~i~~v~-~~hE~~A~~~A~Gyar~tg~~gv~~~tsG 160 (661)
+..+++.+.|.+.. -..|+++ +|+.. + +.+.+ .++ |++. ..-|++++.+|.|.|. .|...+|. |..
T Consensus 320 ~~~~~f~~~L~~la~~d~~iv~isadl~~~~~--~-~~f~~~~p~-R~id~GIaE~~mvg~AaGlA~-~G~~P~v~-~f~ 393 (641)
T PRK12571 320 SYTSVFGEELTKEAAEDSDIVAITAAMPLGTG--L-DKLQKRFPN-RVFDVGIAEQHAVTFAAGLAA-AGLKPFCA-VYS 393 (641)
T ss_pred hHHHHHHHHHHHHHhhCCCEEEEeCCccCCCC--h-HHHHHhCCC-cccccCccHHHHHHHHHHHHH-CCCEEEEE-ehH
Confidence 45566666666543 2345544 33322 2 33433 343 4443 4799999999999998 45434432 466
Q ss_pred hhhHHHHHHH-HHhhhCCCcEEEEecCCCCcccCC--CCCCCCCHHHHhhccccccc-ccCCcCcHHHHHHHHHHHhhcC
Q 048725 161 PGATNLVSGL-ADALLDSVPLVAITGQVPRRMIGT--DAFQETPIVEVTRSITKHNY-LVLDVDDIPRIVREAFLLATSG 236 (661)
Q Consensus 161 pG~~N~l~gl-~~A~~~~iPll~ItG~~p~~~~g~--~~~q~~~~~~~~~~itk~~~-~v~~~~~i~~~i~~A~~~a~s~ 236 (661)
+=+.-++..| .++...+.||+++.- +.. ..|. ..+|.+.+..+++.+--+.. .+.++.++..+++.|++.
T Consensus 394 ~Fl~ra~dQI~~~~a~~~lpv~~v~~-~~G-~~g~dG~THq~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~---- 467 (641)
T PRK12571 394 TFLQRGYDQLLHDVALQNLPVRFVLD-RAG-LVGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRTAAAH---- 467 (641)
T ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEE-CCC-cCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhC----
Confidence 7677888887 447789999998762 111 1122 34677777899999876554 355667776666666542
Q ss_pred CCceEEEEeccc
Q 048725 237 RPGPVLIDVPKD 248 (661)
Q Consensus 237 ~~GPV~I~iP~d 248 (661)
..|||+|.+|..
T Consensus 468 ~~~P~~ir~~r~ 479 (641)
T PRK12571 468 DDGPIAVRFPRG 479 (641)
T ss_pred CCCcEEEEEecC
Confidence 359999999976
No 199
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.79 E-value=1.8 Score=49.99 Aligned_cols=119 Identities=14% Similarity=0.102 Sum_probs=82.9
Q ss_pred CCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhh
Q 048725 492 PRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFY 570 (661)
Q Consensus 492 p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~ 570 (661)
..+++..+.- ..+.-+|-|.+... +++-||++.=| ++...+..+.+|...+.|+++|.-.=.....
T Consensus 42 ~i~~i~~rhE---~~A~~mAdgYar~t-g~~gv~~~t~GPG~~n~l~gi~~A~~~~~Pvl~i~G~~~~~~~--------- 108 (574)
T PRK07979 42 GIDHVLVRHE---QAAVHMADGLARAT-GEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQVATSLI--------- 108 (574)
T ss_pred CceEEEeCcH---HHHHHHHHHHHHHh-CCceEEEECCCccHhhhHHHHHHHhhcCCCEEEEECCCChhcc---------
Confidence 4566655443 23566888888776 45556565434 4555689999999999999998864331110
Q ss_pred cccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 048725 571 KANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPHQ 635 (661)
Q Consensus 571 ~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~~ 635 (661)
+.. .+. ..|...+.+.+=....+|++++++...+++|+. ..||+.|++..|-.
T Consensus 109 ~~~----~~q--------~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv~ 166 (574)
T PRK07979 109 GYD----AFQ--------ECDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDIL 166 (574)
T ss_pred CCC----CCc--------eecHHHHhhcccceEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhhh
Confidence 100 011 158888999988888999999999999988875 36999999988753
No 200
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=92.57 E-value=1.2 Score=51.35 Aligned_cols=152 Identities=16% Similarity=0.155 Sum_probs=91.3
Q ss_pred CcHHHHHHHHHHHCC--CCEEEec----cCCC-cHHHHHHHHcCCCCeEE-ccCChhHHHHHHHHHHHHhCCcEEEEEcc
Q 048725 88 RKGADILVEALERQG--VTDVFAY----PGGA-SMEIHQALTRSNNIRNV-LPRHEQGGIFAAEGYARSSGKPGICIATS 159 (661)
Q Consensus 88 ~~gad~lv~~L~~~G--V~~vFg~----PG~~-~~~l~~aL~~~~~i~~v-~~~hE~~A~~~A~Gyar~tg~~gv~~~ts 159 (661)
.+..+++.+.|.+.. -..++++ +|+. ...|.+. .++ |++ ...-|++.+.+|.|.|.. |...+| .|.
T Consensus 279 ~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~~~~~f~~~---~p~-R~i~~GIaE~~mvg~A~GlA~~-G~~p~~-~~f 352 (580)
T PRK05444 279 PSYTKVFGETLCELAEKDPKIVAITAAMPEGTGLVKFSKR---FPD-RYFDVGIAEQHAVTFAAGLATE-GLKPVV-AIY 352 (580)
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEECCcCCCCCHHHHHHH---hhh-hccCCChHHHHHHHHHHHHHHC-CCeeEE-Eee
Confidence 455667666665553 2344543 2222 2222222 232 333 347899999999999985 443333 345
Q ss_pred chhhHHHHHHHHH-hhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhccccccc-ccCCcCcHHHHHHHHHHHhhcCC
Q 048725 160 GPGATNLVSGLAD-ALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNY-LVLDVDDIPRIVREAFLLATSGR 237 (661)
Q Consensus 160 GpG~~N~l~gl~~-A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~-~v~~~~~i~~~i~~A~~~a~s~~ 237 (661)
.+=+.-++.-+.. +...+.||+++..........-..+|.+.+..+++.+..+.. .+.++.++..+++.|+. ..
T Consensus 353 ~~F~~ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a~~----~~ 428 (580)
T PRK05444 353 STFLQRAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTALA----YD 428 (580)
T ss_pred HHHHHHHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh----CC
Confidence 6655566665544 667899999996433221111234677777899998876654 45566666665555543 33
Q ss_pred CceEEEEeccch
Q 048725 238 PGPVLIDVPKDI 249 (661)
Q Consensus 238 ~GPV~I~iP~dv 249 (661)
+|||+|.+++..
T Consensus 429 ~~P~~ir~~r~~ 440 (580)
T PRK05444 429 DGPIAIRYPRGN 440 (580)
T ss_pred CCcEEEEecCCC
Confidence 599999999764
No 201
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=92.46 E-value=0.21 Score=56.67 Aligned_cols=91 Identities=30% Similarity=0.373 Sum_probs=60.3
Q ss_pred CcccchHHHHHHhhhhCCCCcEEEEECCc-cc----ccChHH--HHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccc
Q 048725 502 GAMGFGLPAAIGAAVANPDAIIVDIDGDG-SF----IMNVQE--LATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANR 574 (661)
Q Consensus 502 g~mG~~lpaAiGaala~p~~~vv~i~GDG-sf----~~~~~e--L~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~ 574 (661)
|-+|++++-|.||++-+|+..++|++||| +- .+++.. ++...+-+.=+-|+++| ||-|. +
T Consensus 153 GeLGy~l~ha~gAa~d~Pdli~~~vvGDGeaetgplatsWhs~kf~np~~dGavLPIL~lN--GykI~----------n- 219 (793)
T COG3957 153 GELGYALSHAYGAAFDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPARDGAVLPILHLN--GYKIE----------N- 219 (793)
T ss_pred cchhHHHHHHHHhhcCCCCcEEEEEecccccccCccccccccccccCccccCceeeEEEec--ceecc----------C-
Confidence 68999999999999999999999999999 32 233322 33333334334455554 56652 1
Q ss_pred cccccCCCCCcccCCccHHHHHhHcCCCEeeeCC--HHH
Q 048725 575 AHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTR--KAD 611 (661)
Q Consensus 575 ~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~--~~e 611 (661)
++.++.-.+ -++.++-++||.+-+.|+. +++
T Consensus 220 -pT~lar~s~-----~el~~~f~G~Gy~p~~veg~d~~d 252 (793)
T COG3957 220 -PTVLARISD-----EELKALFEGYGYEPVFVEGADPAD 252 (793)
T ss_pred -ceeeeecCh-----HHHHHHHhhCCCceeEecCCChHH
Confidence 223332111 4788999999998888865 445
No 202
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=92.41 E-value=1.8 Score=50.51 Aligned_cols=152 Identities=17% Similarity=0.076 Sum_probs=95.0
Q ss_pred CcHHHHHHHHHHHCCCC--EEEec----cCCCcH-HHHHHHHcCCCCeEE-ccCChhHHHHHHHHHHHHhCCcEEEEEcc
Q 048725 88 RKGADILVEALERQGVT--DVFAY----PGGASM-EIHQALTRSNNIRNV-LPRHEQGGIFAAEGYARSSGKPGICIATS 159 (661)
Q Consensus 88 ~~gad~lv~~L~~~GV~--~vFg~----PG~~~~-~l~~aL~~~~~i~~v-~~~hE~~A~~~A~Gyar~tg~~gv~~~ts 159 (661)
.+.++++.+.|.+..-+ .|+.+ +|+.-+ .|.+. .+ =|++ ...-|++++.+|.|.|...-||-|++ .
T Consensus 356 ~~~s~a~~~aL~~~a~~d~~vv~ita~m~g~~gl~~f~~~---fP-~R~fdvGIAEq~~vg~AaGLA~~G~kPvv~~--f 429 (677)
T PLN02582 356 QSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFARR---FP-TRCFDVGIAEQHAVTFAAGLACEGLKPFCAI--Y 429 (677)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEEeCCCCCccchHHHHHH---cC-ccccccCcCHHHHHHHHHHHHHCCCeEEEEe--c
Confidence 35677777777665433 34443 444332 22222 23 2333 34799999999999999766666663 6
Q ss_pred chhhHHHHHHH-HHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhccccccc-ccCCcCcHHHHHHHHHHHhhcCC
Q 048725 160 GPGATNLVSGL-ADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNY-LVLDVDDIPRIVREAFLLATSGR 237 (661)
Q Consensus 160 GpG~~N~l~gl-~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~-~v~~~~~i~~~i~~A~~~a~s~~ 237 (661)
.+=+.-++.-| .++...+.||+++.-........-..+|.+....+++.+..+.. .+.+++++..+++.|+. ..
T Consensus 430 s~Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~al~----~~ 505 (677)
T PLN02582 430 SSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELFHMVATAAA----ID 505 (677)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEECCCcccCCCCcccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh----CC
Confidence 66666777654 66678899998774322211111134666777788888876554 35566676666666654 23
Q ss_pred CceEEEEeccch
Q 048725 238 PGPVLIDVPKDI 249 (661)
Q Consensus 238 ~GPV~I~iP~dv 249 (661)
.|||+|..|...
T Consensus 506 ~gPv~IR~pr~~ 517 (677)
T PLN02582 506 DRPSCFRYPRGN 517 (677)
T ss_pred CCCEEEEEecCC
Confidence 589999999763
No 203
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=92.38 E-value=1.5 Score=46.12 Aligned_cols=149 Identities=15% Similarity=0.102 Sum_probs=85.5
Q ss_pred cHHHHHHHHHHHCCC--CEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHh-CCcEEEEEccchhh--
Q 048725 89 KGADILVEALERQGV--TDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS-GKPGICIATSGPGA-- 163 (661)
Q Consensus 89 ~gad~lv~~L~~~GV--~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~t-g~~gv~~~tsGpG~-- 163 (661)
..-..+.++|.+.|+ +.+..+.|.......-...+ ...+...| .-+.-+|.|.+.+. .++.+|++ |=|.
T Consensus 28 ~i~~~i~~al~~l~l~p~d~vivsdiG~s~~~~~yl~---~~~~~g~m-G~alpaAiGaklA~pd~~VV~i~--GDG~~~ 101 (301)
T PRK05778 28 GILNAIIQALAELGLDPDKVVVVSGIGCSSKIPGYFL---SHGLHTLH-GRAIAFATGAKLANPDLEVIVVG--GDGDLA 101 (301)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCcHhhhhhhhcc---cCccchhh-ccHHHHHHHHHHHCCCCcEEEEe--CccHHH
Confidence 345788899999887 34555555444332111111 11222333 44677889988886 44555544 4443
Q ss_pred HHHHHHHHHhhhCCCcEEEEecCCCCc-----------ccCCC-------C-CCCCCHHHHhhcccccc---cccCCcCc
Q 048725 164 TNLVSGLADALLDSVPLVAITGQVPRR-----------MIGTD-------A-FQETPIVEVTRSITKHN---YLVLDVDD 221 (661)
Q Consensus 164 ~N~l~gl~~A~~~~iPll~ItG~~p~~-----------~~g~~-------~-~q~~~~~~~~~~itk~~---~~v~~~~~ 221 (661)
.-.++-+..|...++||++|.-+.... ..|.. . ....|...+.+.+--.. ..+.++++
T Consensus 102 ~mg~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~e 181 (301)
T PRK05778 102 SIGGGHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQ 181 (301)
T ss_pred hccHHHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHH
Confidence 344577899999999999998543211 01100 0 11245555555542222 14677778
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 222 IPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 222 i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
+..++++|++ ..||++|+|...
T Consensus 182 L~~ai~~A~~-----~~GpalIeV~~~ 203 (301)
T PRK05778 182 LVELIKKAIS-----HKGFAFIDVLSP 203 (301)
T ss_pred HHHHHHHHHh-----CCCCEEEEEcCC
Confidence 8777777774 259999998543
No 204
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=92.37 E-value=0.2 Score=50.74 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=46.8
Q ss_pred HHHhhhcCCEEEEeCCCCCCCcCCccc-ccCCCCeEEEEcCCchhhccCCCCcceEeccHHHHHHHH
Q 048725 348 ANYAVDKSDLLLAFGVRFDDRVTGKLE-AFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGI 413 (661)
Q Consensus 348 a~~~l~~aDlvL~vG~~~~~~~t~~~~-~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L 413 (661)
+.+.+++||++|+||+++.-.....+- .....+++|.|+.++.........++.+.+|+.++|..|
T Consensus 169 ~~~~~~~aDlllvvGTSl~V~pa~~l~~~~~~~~~~v~iN~~~~~~~~~~~~d~~~~~~~~~~l~~~ 235 (235)
T cd01408 169 MEEDKEEADLLIVIGTSLKVAPFASLPSRVPSEVPRVLINREPVGHLGKRPFDVALLGDCDDGVREL 235 (235)
T ss_pred HHHHHhcCCEEEEECCCCeeccHHHHHHHHhCCCcEEEEeCCCCCCCCCCCcCEEEeCCHHHHHHhC
Confidence 445678999999999998644332222 223457788899988765422557899999999998764
No 205
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=92.35 E-value=1.4 Score=45.80 Aligned_cols=92 Identities=18% Similarity=0.095 Sum_probs=59.5
Q ss_pred HHHHHHHHHHCCCC---EEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHh-CCcEEEEEccchhhHHH
Q 048725 91 ADILVEALERQGVT---DVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS-GKPGICIATSGPGATNL 166 (661)
Q Consensus 91 ad~lv~~L~~~GV~---~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~t-g~~gv~~~tsGpG~~N~ 166 (661)
-.+|-+.|.+.|++ .++...-+.+. ......+ .......| ..|.-+|.|...+. .++.++++-=|-+..-.
T Consensus 19 l~al~~al~~l~~~~~~~ivvsdiGc~~-~~~~~~~---~~~~~~~~-G~alp~A~GaklA~Pd~~VV~i~GDG~~f~ig 93 (279)
T PRK11866 19 LEALRKALAELGIPPENVVVVSGIGCSS-NLPEFLN---TYGIHGIH-GRVLPIATGVKWANPKLTVIGYGGDGDGYGIG 93 (279)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCchhh-hhhhhcc---CCCccccc-ccHHHHHHHHHHHCCCCcEEEEECChHHHHcc
Confidence 46777888888753 45544433333 2221211 23445666 66778899998886 45656555444456677
Q ss_pred HHHHHHhhhCCCcEEEEecCC
Q 048725 167 VSGLADALLDSVPLVAITGQV 187 (661)
Q Consensus 167 l~gl~~A~~~~iPll~ItG~~ 187 (661)
++.+..|...++|+++|.-+.
T Consensus 94 ~~eL~tA~rrn~~i~vIV~nN 114 (279)
T PRK11866 94 LGHLPHAARRNVDITYIVSNN 114 (279)
T ss_pred HHHHHHHHHHCcCcEEEEEEC
Confidence 899999999999999987433
No 206
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=92.34 E-value=1.1 Score=43.76 Aligned_cols=148 Identities=14% Similarity=0.068 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHCCC---CE-EEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHh-CCcEEEEEccchhhH
Q 048725 90 GADILVEALERQGV---TD-VFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS-GKPGICIATSGPGAT 164 (661)
Q Consensus 90 gad~lv~~L~~~GV---~~-vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~t-g~~gv~~~tsGpG~~ 164 (661)
.-+++.+++.+.|+ +. ++.=-|. .. +..... .+....... ..+.-+|.|.+.+. +|+.+|++-=|--..
T Consensus 10 ~~~~~~~~~~~~~~~~~d~ii~~D~G~-~~-~~~~~~---~~~~~~g~m-G~glpaAiGa~la~p~r~Vv~i~GDGs~f~ 83 (193)
T cd03375 10 ILKALAKALAELGIDPEKVVVVSGIGC-SS-RLPYYF---NTYGFHTLH-GRALAVATGVKLANPDLTVIVVSGDGDLAA 83 (193)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCCh-hc-eehhhc---cccchhhhh-ccHHHHHHHHHHhCCCCeEEEEeccchHhh
Confidence 44678888888876 33 4433343 22 111011 111111000 22455788988876 566666654332122
Q ss_pred HHHHHHHHhhhCCCcEEEEecCCCCcc-cCC-------------CCC-----CCCCHHHHhhcc-cccc--cccCCcCcH
Q 048725 165 NLVSGLADALLDSVPLVAITGQVPRRM-IGT-------------DAF-----QETPIVEVTRSI-TKHN--YLVLDVDDI 222 (661)
Q Consensus 165 N~l~gl~~A~~~~iPll~ItG~~p~~~-~g~-------------~~~-----q~~~~~~~~~~i-tk~~--~~v~~~~~i 222 (661)
-.+..+..|...++|+++|.-+..... .+. ... ...|...+.+.+ .++. .++.+++++
T Consensus 84 m~~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el 163 (193)
T cd03375 84 IGGNHFIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQL 163 (193)
T ss_pred ccHHHHHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCCCcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHH
Confidence 346788999999999999886543211 110 000 013445555554 2221 246777777
Q ss_pred HHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 223 PRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 223 ~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
...+++|++ .+||+.|++..+
T Consensus 164 ~~al~~al~-----~~gp~vIev~~~ 184 (193)
T cd03375 164 KEIIKKAIQ-----HKGFSFVEVLSP 184 (193)
T ss_pred HHHHHHHHh-----cCCCEEEEEECC
Confidence 777777764 258999999654
No 207
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=92.20 E-value=0.68 Score=43.75 Aligned_cols=104 Identities=24% Similarity=0.316 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEecCCCCccc----------C---CCCCCCCCH
Q 048725 137 GGIFAAEGYARSS-GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMI----------G---TDAFQETPI 202 (661)
Q Consensus 137 ~A~~~A~Gyar~t-g~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~~~----------g---~~~~q~~~~ 202 (661)
.+.-+|.|.+.+. +++.+|++-=|. +...+.++..|...++|+++|.-+...... + .......|.
T Consensus 50 ~~~~~a~Gaa~a~~~~~vv~~~GDG~-~~~~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 128 (168)
T cd00568 50 YGLPAAIGAALAAPDRPVVCIAGDGG-FMMTGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDF 128 (168)
T ss_pred hhHHHHHHHHHhCCCCcEEEEEcCcH-HhccHHHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcCCCcccccCCCCCH
Confidence 3456788888777 566666554332 333568888898999999999865542211 0 012234566
Q ss_pred HHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEec
Q 048725 203 VEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVP 246 (661)
Q Consensus 203 ~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP 246 (661)
..+.+.+--...++.+++++.+.+++|+ +. .||+.|++.
T Consensus 129 ~~~a~~~G~~~~~v~~~~~l~~a~~~a~----~~-~~p~~i~v~ 167 (168)
T cd00568 129 AALAEAYGAKGVRVEDPEDLEAALAEAL----AA-GGPALIEVK 167 (168)
T ss_pred HHHHHHCCCeEEEECCHHHHHHHHHHHH----hC-CCCEEEEEE
Confidence 6677665444456666666555555554 33 489999874
No 208
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=92.15 E-value=0.29 Score=49.81 Aligned_cols=68 Identities=13% Similarity=0.117 Sum_probs=50.9
Q ss_pred HHHhhhcCCEEEEeCCCCCCCcCCcccc--cCCCCeEEEEcCCchhhccCCCCcceEeccHHHHHHHHHHHh
Q 048725 348 ANYAVDKSDLLLAFGVRFDDRVTGKLEA--FASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRIL 417 (661)
Q Consensus 348 a~~~l~~aDlvL~vG~~~~~~~t~~~~~--~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 417 (661)
+.+.+.+||++|++|+++.-.....+.. .....+++.|+.++..+.. ..++.+.+|+.++|.+|.+.+
T Consensus 172 ~~~~~~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~~d~--~~~~~i~~~~~~~l~~l~~~~ 241 (244)
T PRK14138 172 AIRLSSKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNLGETPLDD--IATLKYNMDVVEFANRVMSEG 241 (244)
T ss_pred HHHHHhcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcCCCCCCCc--ceeEEEeCCHHHHHHHHHHHh
Confidence 4566789999999999986544333321 2346789999998877653 467899999999999998754
No 209
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=92.13 E-value=2.1 Score=45.56 Aligned_cols=113 Identities=16% Similarity=0.044 Sum_probs=68.9
Q ss_pred eEEcc-CChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHH-HH-hhh-------CCCcEEEEecCCCCcccCCCCC
Q 048725 128 RNVLP-RHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSGL-AD-ALL-------DSVPLVAITGQVPRRMIGTDAF 197 (661)
Q Consensus 128 ~~v~~-~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~gl-~~-A~~-------~~iPll~ItG~~p~~~~g~~~~ 197 (661)
|++.+ .-|++++.+|.|.|....||-|++.. ..-+..++.-| .+ |+. -++||++....-+....|. .+
T Consensus 52 R~~d~gIaE~~~vg~AaGlA~~G~~Piv~~~~-~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G~-tH 129 (327)
T PRK09212 52 RVIDTPITEHGFAGLAVGAAFAGLRPIVEFMT-FNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAA-QH 129 (327)
T ss_pred ceeecchhHHHHHHHHHHHHHcCCeeEEEeeh-hhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCCc-cc
Confidence 44444 79999999999999987777776432 11122332222 12 233 2689888765433222221 12
Q ss_pred -CCCCHHHHhhcccccccc-cCCcCcHHHHHHHHHHHhhcCCCceEEEEeccch
Q 048725 198 -QETPIVEVTRSITKHNYL-VLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDI 249 (661)
Q Consensus 198 -q~~~~~~~~~~itk~~~~-v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~dv 249 (661)
|.. ..+++.+...... +.++.++..+++.|++. .+||+|..|...
T Consensus 130 ~~~~--ea~~r~iP~l~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~~ 176 (327)
T PRK09212 130 SQCY--AAWYSHIPGLKVVAPYFAADCKGLLKTAIRD-----PNPVIFLENEIL 176 (327)
T ss_pred ccCH--HHHHhcCCCCEEEeeCCHHHHHHHHHHHHhC-----CCcEEEEEchhh
Confidence 333 3888888665543 56777778777777642 489999776543
No 210
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=92.11 E-value=0.33 Score=49.38 Aligned_cols=68 Identities=16% Similarity=0.190 Sum_probs=49.7
Q ss_pred HHHhhhcCCEEEEeCCCCCCCcCCcccc--cCCCCeEEEEcCCchhhccCCCCcceEeccHHHHHHHHHHHh
Q 048725 348 ANYAVDKSDLLLAFGVRFDDRVTGKLEA--FASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRIL 417 (661)
Q Consensus 348 a~~~l~~aDlvL~vG~~~~~~~t~~~~~--~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 417 (661)
+.+.++++|++|++|+++.-.....+-. ..+++++|.|+.++..+.. ..++.+.+|+.++|..|.+.+
T Consensus 171 a~~~~~~~dl~lviGTsl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~~--~~~~~i~~~~~~~l~~l~~~~ 240 (242)
T PRK00481 171 AYEALEEADLFIVIGTSLVVYPAAGLPYEAREHGAKTVEINLEPTPLDS--LFDLVIHGKAGEVVPELVEEL 240 (242)
T ss_pred HHHHHhcCCEEEEECCCceEcCHhHHHHHHHHCCCeEEEECCCCCCCCC--ccCEEEECCHHHHHHHHHHHh
Confidence 4556789999999999875433222222 2357789999999876543 367899999999999987654
No 211
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=92.09 E-value=4.9 Score=38.91 Aligned_cols=106 Identities=14% Similarity=0.130 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhC-CcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEecCCCCccc-----CC----CCCCCCCHHHHhh
Q 048725 138 GIFAAEGYARSSG-KPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMI-----GT----DAFQETPIVEVTR 207 (661)
Q Consensus 138 A~~~A~Gyar~tg-~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~~~-----g~----~~~q~~~~~~~~~ 207 (661)
+.-+|.|.+.+.. ++.+|++-=| ++.-.++.+..|...++|+++|.-+...... +. ..++..|...+.+
T Consensus 55 ~l~~aiGaala~~~~~vv~i~GDG-~f~~~~~el~ta~~~~~p~~ivV~nN~~~~~~~~~~~~~~~~~~~~~~d~~~ia~ 133 (183)
T cd02005 55 SVPAALGAALAAPDRRVILLVGDG-SFQMTVQELSTMIRYGLNPIIFLINNDGYTIERAIHGPEASYNDIANWNYTKLPE 133 (183)
T ss_pred hHHHHHHHHHhCCCCeEEEEECCc-hhhccHHHHHHHHHhCCCCEEEEEECCCcEEEEEeccCCcCcccCCCCCHHHHHH
Confidence 4456788777764 6666654333 3333456788899999999988865432111 00 1122345566666
Q ss_pred ccc----ccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 208 SIT----KHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 208 ~it----k~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
.+- -+..++.+++++.+.+++|++ +. .||+.|++..|
T Consensus 134 a~G~~~~~~~~~v~~~~el~~al~~a~~---~~-~~p~liev~~~ 174 (183)
T cd02005 134 VFGGGGGGLSFRVKTEGELDEALKDALF---NR-DKLSLIEVILP 174 (183)
T ss_pred HhCCCccccEEEecCHHHHHHHHHHHHh---cC-CCcEEEEEEcC
Confidence 653 345677888888777777765 12 48999999765
No 212
>PRK07524 hypothetical protein; Provisional
Probab=92.08 E-value=0.8 Score=52.32 Aligned_cols=120 Identities=12% Similarity=0.086 Sum_probs=81.6
Q ss_pred CeEEecCCCCcccchHHHHHHhhhhCCCCcEEEE-ECCcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhc
Q 048725 493 RQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDI-DGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYK 571 (661)
Q Consensus 493 ~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i-~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~ 571 (661)
.+++....- +.+.-+|-|.+... +++-||+ +..-++.-.+..|..|...+.|+++|.-...... ++
T Consensus 40 i~~i~~~hE---~~A~~mAdgyar~t-g~~gv~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i~G~~~~~~---------~~ 106 (535)
T PRK07524 40 IRHVTPRHE---QGAGFMADGYARVS-GKPGVCFIITGPGMTNIATAMGQAYADSIPMLVISSVNRRAS---------LG 106 (535)
T ss_pred CcEEEeccH---HHHHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHHhcCCCEEEEeCCCChhh---------cC
Confidence 445544332 33677888888776 4554444 4444555568999999999999999986543211 01
Q ss_pred ccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 572 ANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 572 ~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
.+. ..+.. .+|...+.+.+-....+|.+++++...+++|+. ..||+.|++..|-
T Consensus 107 ~~~--~~~~~-------~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (535)
T PRK07524 107 KGR--GKLHE-------LPDQRAMVAGVAAFSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLDV 165 (535)
T ss_pred CCC--ccccc-------cccHHHHhhhhceeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeCHhH
Confidence 100 00000 157888999998889999999999988888774 3689999999874
No 213
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=92.02 E-value=0.47 Score=51.15 Aligned_cols=109 Identities=23% Similarity=0.219 Sum_probs=70.0
Q ss_pred cchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHH---HHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCC
Q 048725 505 GFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELAT---IKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGD 581 (661)
Q Consensus 505 G~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~t---a~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~ 581 (661)
|-+++.|.|+.++..++++| ++=-.++.-.++-|.. ..-|++|++++|--=+.+|....-|+. ..|
T Consensus 36 ~~av~iaaG~~latG~~~~v-~mQnSGlGn~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh~---------~~G- 104 (361)
T TIGR03297 36 GAAVGLAAGAYLATGKRAAV-YMQNSGLGNAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQHV---------KQG- 104 (361)
T ss_pred hHHHHHHHHHHHhcCCccEE-EEecCchhhhhhHHHhhccccccCcCeeEEEecCCCCCCCCCchhh---------HHh-
Confidence 66899999999997566665 4445556655666644 466899999988766655532111111 111
Q ss_pred CCCcccCCccHHHHHhHcCCCEeee-CCHHHHHH----HHHHHHhCCCcEEEEEEe
Q 048725 582 PSRESEIFPNMLKFAEACGIPGAQV-TRKADLRA----AIQTMLDTPGPYLLDVIF 632 (661)
Q Consensus 582 p~~~~~~~~d~~~~A~a~G~~~~~v-~~~~el~~----al~~a~~~~gp~lIeV~~ 632 (661)
---..+-+++|+++..+ ++.+|..+ +++.+++.++|+.|-|.-
T Consensus 105 --------~~t~~lL~~~~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~ 152 (361)
T TIGR03297 105 --------RITLSLLDALEIPWEVLSTDNDEALAQIERALAHALATSRPYALVVRK 152 (361)
T ss_pred --------HHHHHHHHHcCCCEEECCCChHHHHHHHHHHHHHHHHHCCCEEEEEcc
Confidence 12356889999999999 45555544 555555678898775543
No 214
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=91.92 E-value=2.7 Score=44.80 Aligned_cols=153 Identities=15% Similarity=0.093 Sum_probs=86.4
Q ss_pred CcHHHHHHHHHHHCCC--CEEEeccCCC-----cHHHHHHHHc-CCCCeEEcc-CChhHHHHHHHHHHHHhCCcEEEEEc
Q 048725 88 RKGADILVEALERQGV--TDVFAYPGGA-----SMEIHQALTR-SNNIRNVLP-RHEQGGIFAAEGYARSSGKPGICIAT 158 (661)
Q Consensus 88 ~~gad~lv~~L~~~GV--~~vFg~PG~~-----~~~l~~aL~~-~~~i~~v~~-~hE~~A~~~A~Gyar~tg~~gv~~~t 158 (661)
++-.+++.+.|.++.- +.++.+-++- .....+.|.+ .++-|++.+ ..|++++.+|.|.|+...||-|+..
T Consensus 4 ~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~fp~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~~~- 82 (327)
T CHL00144 4 VFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKYGDLRVLDTPIAENSFTGMAIGAAMTGLRPIVEGM- 82 (327)
T ss_pred chHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHCCCccEeeccccHHHHHHHHHHHHHCCCEEEEEee-
Confidence 3444555555555432 2344443332 1334555554 343366665 8999999999999998877766532
Q ss_pred cchh-hHHHHHHHH-H-hhh-------CCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccc-cCCcCcHHHHHH
Q 048725 159 SGPG-ATNLVSGLA-D-ALL-------DSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYL-VLDVDDIPRIVR 227 (661)
Q Consensus 159 sGpG-~~N~l~gl~-~-A~~-------~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~-v~~~~~i~~~i~ 227 (661)
.+- +.-++--|. + |+. -++||++....-... +.+..+.-....+++.+..+... +.++.++..+++
T Consensus 83 -~~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~~~g~~~~--~~G~tHs~~~ea~~~~iPgl~V~~Psd~~d~~~~l~ 159 (327)
T CHL00144 83 -NMGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRGPGGVGR--QLGAEHSQRLESYFQSVPGLQIVACSTPYNAKGLLK 159 (327)
T ss_pred -hhhHHHHHHHHHHHHHHHHhhccCCCccCCEEEEecCCCCC--CCCccccccHHHHHhcCCCCEEEEeCCHHHHHHHHH
Confidence 222 223333331 1 333 278988875422111 12222211235888888776554 567788888777
Q ss_pred HHHHHhhcCCCceEEEEeccch
Q 048725 228 EAFLLATSGRPGPVLIDVPKDI 249 (661)
Q Consensus 228 ~A~~~a~s~~~GPV~I~iP~dv 249 (661)
.|++ . +|||||.-|..+
T Consensus 160 ~a~~----~-~~Pv~ire~~~l 176 (327)
T CHL00144 160 SAIR----S-NNPVIFFEHVLL 176 (327)
T ss_pred HHHh----C-CCcEEEEEcHHh
Confidence 7664 2 499999855443
No 215
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=91.83 E-value=2.6 Score=49.09 Aligned_cols=117 Identities=16% Similarity=0.106 Sum_probs=80.2
Q ss_pred CeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhc
Q 048725 493 RQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYK 571 (661)
Q Consensus 493 ~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~ 571 (661)
.+++....- ..+.-+|.|.+... +++.||++-=| ++...+..|..|...++|+++|.-.-....+ +
T Consensus 70 i~~v~~rhE---~~A~~~Adgyar~t-g~~gv~~~t~GPG~~N~l~gl~~A~~~~~PllvI~G~~~~~~~---------~ 136 (612)
T PRK07789 70 VRHVLVRHE---QGAGHAAEGYAQAT-GRVGVCMATSGPGATNLVTPIADANMDSVPVVAITGQVGRGLI---------G 136 (612)
T ss_pred ceEEEeccH---HHHHHHHHHHHHHh-CCCEEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCcccc---------C
Confidence 455544332 23667888888776 45656555433 4555689999999999999999865432110 0
Q ss_pred ccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 572 ANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 572 ~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
. ..+. ..|...+++.+-....+|++++++...+++|+. ..||++|++..|-
T Consensus 137 ~----~~~q--------~~d~~~l~~~~tk~s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv 192 (612)
T PRK07789 137 T----DAFQ--------EADIVGITMPITKHNFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKDA 192 (612)
T ss_pred C----CcCc--------ccchhhhhhcceeEEEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEEccch
Confidence 0 0111 158888888888788899999998888888775 3589999999874
No 216
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=91.72 E-value=1.6 Score=41.17 Aligned_cols=115 Identities=16% Similarity=0.217 Sum_probs=66.8
Q ss_pred CCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCccccc-ChHHHH-HHHHcCCCeEEEEEeCCcchhHHHHHHH
Q 048725 491 RPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIM-NVQELA-TIKVEKLPIKILLLNNQHLGMVMQWEDR 568 (661)
Q Consensus 491 ~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~-~~~eL~-ta~~~~lpv~ivV~NN~g~g~~~~~~~~ 568 (661)
.|.+++..+- +=...++.|.|.++.. -++++... ..|.. ....|. .++..++|+++++- ..+++.-
T Consensus 37 ~p~r~i~~gI--aE~~~vg~A~GlA~~G-~~pi~~~~--~~f~~ra~dqi~~~~a~~~~pv~~~~~-~~g~~~~------ 104 (156)
T cd07033 37 FPDRFIDVGI--AEQNMVGIAAGLALHG-LKPFVSTF--SFFLQRAYDQIRHDVALQNLPVKFVGT-HAGISVG------ 104 (156)
T ss_pred CCCCeEEeCh--hHHHHHHHHHHHHHCC-CeEEEEEC--HHHHHHHHHHHHHHHhccCCCeEEEEE-CCcEecC------
Confidence 3566665321 1112477888888763 45555444 44443 455566 77888999888655 4433320
Q ss_pred hhcccccccccCCCCCcccCCccHHHHHhHc-CCCEeeeCCHHHHHHHHHHHHhCCCcEEEEE
Q 048725 569 FYKANRAHTYLGDPSRESEIFPNMLKFAEAC-GIPGAQVTRKADLRAAIQTMLDTPGPYLLDV 630 (661)
Q Consensus 569 ~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lIeV 630 (661)
.. |.-+. .++...+-+.+ |+.-+...+++|++..++++++.++|++|-.
T Consensus 105 --~~-------G~tH~----~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~~~~P~~irl 154 (156)
T cd07033 105 --ED-------GPTHQ----GIEDIALLRAIPNMTVLRPADANETAAALEAALEYDGPVYIRL 154 (156)
T ss_pred --CC-------Ccccc----hHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 00 10000 02222233333 5566677999999999999999989988754
No 217
>PRK07586 hypothetical protein; Validated
Probab=91.64 E-value=2.7 Score=47.71 Aligned_cols=119 Identities=13% Similarity=-0.007 Sum_probs=79.7
Q ss_pred CCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEEC-CcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhh
Q 048725 492 PRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDG-DGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFY 570 (661)
Q Consensus 492 p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~G-DGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~ 570 (661)
..+|+....- ..+.-+|-|.+... +++.||++- --++.-.+..|.+|...+.|+++|.-.-.....
T Consensus 39 ~i~~i~~rhE---~~A~~mAdgyar~t-g~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~i~G~~~~~~~--------- 105 (514)
T PRK07586 39 GMRCVLGLFE---GVATGAADGYARMA-GKPAATLLHLGPGLANGLANLHNARRARTPIVNIVGDHATYHR--------- 105 (514)
T ss_pred CCeEEEeccH---HHHHHHHHHHHHHH-CCCEEEEecccHHHHHHHHHHHHHHhcCCCEEEEecCCchhcc---------
Confidence 3555554432 22566777777765 455655543 334555688899999999999998865332110
Q ss_pred cccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 048725 571 KANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPHQ 635 (661)
Q Consensus 571 ~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~~ 635 (661)
.. +..+ ..|...+++.+-.+..+|++++++...+++|+. ..||++|++..|-.
T Consensus 106 ~~-------~~~q-----~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv~ 163 (514)
T PRK07586 106 KY-------DAPL-----TSDIEALARPVSGWVRRSESAADVAADAAAAVAAARGAPGQVATLILPADVA 163 (514)
T ss_pred CC-------Cccc-----ccchhhhhccccceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccchh
Confidence 00 0000 158888888888888899999998888777774 36899999998854
No 218
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=91.64 E-value=1.7 Score=41.85 Aligned_cols=104 Identities=22% Similarity=0.272 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHh-CCcEEEEEccchhhH--HHHHHHHHhhhCCCcEEEEecCCCCcc-cCC-----------CCCCCCCH
Q 048725 138 GIFAAEGYARSS-GKPGICIATSGPGAT--NLVSGLADALLDSVPLVAITGQVPRRM-IGT-----------DAFQETPI 202 (661)
Q Consensus 138 A~~~A~Gyar~t-g~~gv~~~tsGpG~~--N~l~gl~~A~~~~iPll~ItG~~p~~~-~g~-----------~~~q~~~~ 202 (661)
+.-+|.|.+.+. .++.+|++ |=|.. +.+..|..|...++|+++|.-+..... .+. ......|.
T Consensus 56 gl~~AiGa~la~p~~~Vv~i~--GDG~f~~~g~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~~~~~~~~~~d~ 133 (178)
T cd02008 56 SIGVAIGMAKASEDKKVVAVI--GDSTFFHSGILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGKTLTEPTTVIDI 133 (178)
T ss_pred HHHHHhhHHhhCCCCCEEEEe--cChHHhhccHHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCcccccCCCCccCH
Confidence 445677877776 45666654 43433 336789999999999999986654211 110 00112466
Q ss_pred HHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEe
Q 048725 203 VEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDV 245 (661)
Q Consensus 203 ~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~i 245 (661)
..+.+.+--...++.+++++.+ +.+|++.|... +||..|++
T Consensus 134 ~~~a~a~G~~~~~v~~~~~l~~-~~~al~~a~~~-~gp~lI~v 174 (178)
T cd02008 134 EALVRAIGVKRVVVVDPYDLKA-IREELKEALAV-PGVSVIIA 174 (178)
T ss_pred HHHHHHCCCCEEEecCccCHHH-HHHHHHHHHhC-CCCEEEEE
Confidence 6777766555567888888873 23344444433 58998876
No 219
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=91.59 E-value=2.6 Score=43.77 Aligned_cols=146 Identities=14% Similarity=0.093 Sum_probs=83.1
Q ss_pred HHHHHHHHHHCCC---CEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHh-CCcEEEEEccchhhHH-
Q 048725 91 ADILVEALERQGV---TDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS-GKPGICIATSGPGATN- 165 (661)
Q Consensus 91 ad~lv~~L~~~GV---~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~t-g~~gv~~~tsGpG~~N- 165 (661)
-..+++.|.+.++ +.++....+. ...+-... ..+.+...| ..|.-+|.|.+.+. +++.+|++ |=|..-
T Consensus 28 ~~~v~~al~e~~~~~~d~ivvsdiGc-~~~~~~~~---~~~~~~~~~-G~alPaAiGaklA~Pdr~VV~i~--GDG~f~~ 100 (277)
T PRK09628 28 LKSIIRAIDKLGWNMDDVCVVSGIGC-SGRFSSYV---NCNTVHTTH-GRAVAYATGIKLANPDKHVIVVS--GDGDGLA 100 (277)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCcCH-HHHhhccC---CCCceeecc-ccHHHHHHHHHHHCCCCeEEEEE--CchHHHH
Confidence 3668899988863 3444433333 22221111 133344444 46788899999887 45555554 444332
Q ss_pred -HHHHHHHhhhCCCcEEEEecCCCCc-ccC----------C-------CC-CCCCCHHHHhhcccccc---cccCCcCcH
Q 048725 166 -LVSGLADALLDSVPLVAITGQVPRR-MIG----------T-------DA-FQETPIVEVTRSITKHN---YLVLDVDDI 222 (661)
Q Consensus 166 -~l~gl~~A~~~~iPll~ItG~~p~~-~~g----------~-------~~-~q~~~~~~~~~~itk~~---~~v~~~~~i 222 (661)
...-+..|...++||++|.-+.... +.+ . +. ....|...+.+.+--.. ..+.+++++
T Consensus 101 ~g~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~~~~el 180 (277)
T PRK09628 101 IGGNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPTFDACKLATAAGASFVARESVIDPQKL 180 (277)
T ss_pred hhHHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCCCCHHHHHHHCCCceEEEEccCCHHHH
Confidence 2345566899999999987433211 100 0 00 01234456655542222 367788888
Q ss_pred HHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 223 PRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 223 ~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
...+++|++. +||+.|++..+
T Consensus 181 ~~al~~Al~~-----~Gp~lIeV~~~ 201 (277)
T PRK09628 181 EKLLVKGFSH-----KGFSFFDVFSN 201 (277)
T ss_pred HHHHHHHHhC-----CCCEEEEEcCC
Confidence 7777777652 59999999654
No 220
>PRK08322 acetolactate synthase; Reviewed
Probab=91.51 E-value=0.86 Score=52.19 Aligned_cols=106 Identities=9% Similarity=0.022 Sum_probs=75.5
Q ss_pred hHHHHHHhhhhCCCCcEEEEEC-CcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCc
Q 048725 507 GLPAAIGAAVANPDAIIVDIDG-DGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRE 585 (661)
Q Consensus 507 ~lpaAiGaala~p~~~vv~i~G-DGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~ 585 (661)
+.-+|.|.+.+. +++.+|++- .-++.-.+..+..|...+.|+++|.-+=....+ +. ..+.
T Consensus 50 A~~~A~gyar~t-g~~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~g~~~~~~~---------~~----~~~q----- 110 (547)
T PRK08322 50 AAFMAATYGRLT-GKAGVCLSTLGPGATNLVTGVAYAQLGGMPMVAITGQKPIKRS---------KQ----GSFQ----- 110 (547)
T ss_pred HHHHHHHHHHhh-CCCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEecccccccc---------CC----Cccc-----
Confidence 567888887776 456666654 345555689999999999999998864322110 00 0011
Q ss_pred ccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 586 SEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 586 ~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
..|...+.+.+--...+|++++++...+++|+. ..||++|++..|-
T Consensus 111 ---~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 161 (547)
T PRK08322 111 ---IVDVVAMMAPLTKWTRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPEDI 161 (547)
T ss_pred ---cccHHHHhhhheeEEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhh
Confidence 157888888887778899999999888887775 3589999999874
No 221
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=91.51 E-value=0.93 Score=52.25 Aligned_cols=118 Identities=19% Similarity=0.156 Sum_probs=81.0
Q ss_pred CCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhh
Q 048725 492 PRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFY 570 (661)
Q Consensus 492 p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~ 570 (661)
+.+++....- +.+.-+|.|.+.+. +++.||++.=| +....+..|..|...+.|+++|.-.-....+
T Consensus 53 ~i~~i~~~hE---~~A~~~A~gyar~t-g~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~ItG~~~~~~~--------- 119 (571)
T PRK07710 53 GIPHILTRHE---QGAIHAAEGYARIS-GKPGVVIATSGPGATNVVTGLADAMIDSLPLVVFTGQVATSVI--------- 119 (571)
T ss_pred CCcEEEeCCH---HHHHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEeccCCcccc---------
Confidence 3455543322 33667888888776 56777776444 3444689999999999999998865443211
Q ss_pred cccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 571 KANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 571 ~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
+. +..+ .+|...+.+.+-.+..++.+++++...+++|+. .+||+.|++..|-
T Consensus 120 ~~-------~~~q-----~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 176 (571)
T PRK07710 120 GS-------DAFQ-----EADIMGITMPVTKHNYQVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKDM 176 (571)
T ss_pred CC-------CCcc-----ccchhhhhhcccceEEecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcChhH
Confidence 00 1111 157888888887788899999998888888775 2599999999863
No 222
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.50 E-value=0.79 Score=52.81 Aligned_cols=119 Identities=17% Similarity=0.119 Sum_probs=81.5
Q ss_pred CCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEEC-CcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhh
Q 048725 492 PRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDG-DGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFY 570 (661)
Q Consensus 492 p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~G-DGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~ 570 (661)
..+++....- ..+.-+|-|.+... +++.+|++- --+....+..|.+|...+.|+++|.-.-.....
T Consensus 52 ~i~~i~~rhE---~~A~~mAdgyar~t-g~~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~G~~~~~~~--------- 118 (570)
T PRK06725 52 GLKHILTRHE---QAAIHAAEGYARAS-GKVGVVFATSGPGATNLVTGLADAYMDSIPLVVITGQVATPLI--------- 118 (570)
T ss_pred CCcEEEecCH---HHHHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHhhcCcCEEEEecCCCcccc---------
Confidence 3455554432 22566888888776 455555543 334555689999999999999998864332110
Q ss_pred cccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 048725 571 KANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPHQ 635 (661)
Q Consensus 571 ~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~~ 635 (661)
+.. .+. ..|...+++.+-....+|++++++...+++|+. .+||+.|++..|-.
T Consensus 119 ~~~----~~q--------~~d~~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv~ 176 (570)
T PRK06725 119 GKD----GFQ--------EADVVGITVPVTKHNYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDVQ 176 (570)
T ss_pred cCC----CCc--------ccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEccccchh
Confidence 000 011 158888999988888999999999998888875 26999999998743
No 223
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=91.48 E-value=3.9 Score=39.59 Aligned_cols=104 Identities=19% Similarity=0.193 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCC-CcEEEEecCCCC-cccCC---CCCCCCCHHHHhhccccc
Q 048725 138 GIFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDS-VPLVAITGQVPR-RMIGT---DAFQETPIVEVTRSITKH 212 (661)
Q Consensus 138 A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~gl~~A~~~~-iPll~ItG~~p~-~~~g~---~~~q~~~~~~~~~~itk~ 212 (661)
+.-+|.|.+.+.+++.+|++-=|--.. .+..+..|...+ .|+++|.-+... .+.+. ......|...+.+.+--.
T Consensus 47 ~lpaAiGa~la~~~~Vv~i~GDG~f~m-~~~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~d~~~lA~a~G~~ 125 (181)
T TIGR03846 47 ASSIGLGLALATDRTVIVIDGDGSLLM-NLGVLPTIAAESPKNLILVILDNGAYGSTGNQPTPASRRTDLELVAKAAGIR 125 (181)
T ss_pred HHHHHHHHHHcCCCcEEEEEcchHHHh-hhhHHHHHHHhCCCCeEEEEEeCCccccccCcCCCCCCCCCHHHHHHHCCCC
Confidence 456788888777778777654332222 346777877777 599998854432 11110 011245666677666444
Q ss_pred ccc-cCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 213 NYL-VLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 213 ~~~-v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
..+ +.+++++...++ |+ . ..||..|++..|
T Consensus 126 ~~~~v~~~~~l~~al~-a~----~-~~~p~li~v~~~ 156 (181)
T TIGR03846 126 NVEKVADEEELRDALK-AL----A-MKGPTFIHVKVK 156 (181)
T ss_pred eEEEeCCHHHHHHHHH-HH----c-CCCCEEEEEEeC
Confidence 445 777777766664 43 2 258999999876
No 224
>PRK08611 pyruvate oxidase; Provisional
Probab=91.41 E-value=1.1 Score=51.70 Aligned_cols=117 Identities=15% Similarity=0.092 Sum_probs=80.1
Q ss_pred CeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECC-cccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhc
Q 048725 493 RQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGD-GSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYK 571 (661)
Q Consensus 493 ~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GD-Gsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~ 571 (661)
.+++....- ..+.-+|.|.+.+. +++.+|++-= -++.-.+..|.+|...+.|+++|.-.-....+ +
T Consensus 44 i~~i~~rhE---~~A~~mAdgyar~t-g~~gv~~~t~GPG~~N~l~gla~A~~~~~Pvl~ItG~~~~~~~---------~ 110 (576)
T PRK08611 44 IKFIQVRHE---EVAALAAAAYAKLT-GKIGVCLSIGGPGAIHLLNGLYDAKMDHVPVLALAGQVTSDLL---------G 110 (576)
T ss_pred CeEEEeCcH---HHHHHHHHHHHHHh-CCceEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCccccc---------C
Confidence 455554332 22566777877766 4666666643 34445688999999999999999876543211 1
Q ss_pred ccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh----CCCcEEEEEEeCC
Q 048725 572 ANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD----TPGPYLLDVIFPH 634 (661)
Q Consensus 572 ~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~----~~gp~lIeV~~~~ 634 (661)
.. .+. .+|...+.+.+-....++++++++..++++|+. ..||+.|++..|-
T Consensus 111 ~~----~~q--------~~d~~~l~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~Dv 165 (576)
T PRK08611 111 TD----FFQ--------EVNLEKMFEDVAVYNHQIMSAENLPEIVNQAIRTAYEKKGVAVLTIPDDL 165 (576)
T ss_pred CC----Ccc--------ccCHHHHhhcccceeEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChhh
Confidence 10 011 158888999888888899999998887777653 5699999998874
No 225
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=91.29 E-value=3.2 Score=48.13 Aligned_cols=150 Identities=18% Similarity=0.123 Sum_probs=89.7
Q ss_pred CcHHHHHHHHHHHCCCC--EEEe----ccCCCcHHHHHHHH-cCCCCeEEc-cCChhHHHHHHHHHHHHhCCcEEEEEcc
Q 048725 88 RKGADILVEALERQGVT--DVFA----YPGGASMEIHQALT-RSNNIRNVL-PRHEQGGIFAAEGYARSSGKPGICIATS 159 (661)
Q Consensus 88 ~~gad~lv~~L~~~GV~--~vFg----~PG~~~~~l~~aL~-~~~~i~~v~-~~hE~~A~~~A~Gyar~tg~~gv~~~ts 159 (661)
++..+++.+.|.++.-+ .|+. ++|+... +.+. +.| =|++. ..-|++++.+|.|.|...-||-+++ .
T Consensus 357 ~sy~~af~~aL~e~a~~D~~Iv~l~adm~ggt~~---~~f~~~fP-dR~fdvGIAEq~~Vg~AaGLA~~G~rPvv~~--f 430 (641)
T PLN02234 357 QSYTSCFVEALIAEAEADKDIVAIHAAMGGGTML---NLFESRFP-TRCFDVGIAEQHAVTFAAGLACEGLKPFCTI--Y 430 (641)
T ss_pred CCHHHHHHHHHHHHHHHCcCEEEEECCCCCCcch---HHHHHHcc-ccccCCCcCHHHHHHHHHHHHHCCCeEEEEe--h
Confidence 45667777777655433 2222 3444433 3333 223 23443 3799999999999999766666654 5
Q ss_pred chhhHHHHHHH-HHhhhCCCcEEEEecCCCCcccCC--CCCCCCCHHHHhhccccccc-ccCCcCcHHHHHHHHHHHhhc
Q 048725 160 GPGATNLVSGL-ADALLDSVPLVAITGQVPRRMIGT--DAFQETPIVEVTRSITKHNY-LVLDVDDIPRIVREAFLLATS 235 (661)
Q Consensus 160 GpG~~N~l~gl-~~A~~~~iPll~ItG~~p~~~~g~--~~~q~~~~~~~~~~itk~~~-~v~~~~~i~~~i~~A~~~a~s 235 (661)
.+=+.-++.-| .++...+.|++++. ++.- ..|. ..+|.+.+..+++.+-.... .+.++.++..+++.|+ .
T Consensus 431 s~Fl~RA~DQI~~dva~~~lpV~~v~-~~aG-~~g~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~a~----~ 504 (641)
T PLN02234 431 SSFMQRAYDQVVHDVDLQKLPVRFAI-DRAG-LMGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVATAA----A 504 (641)
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEE-eCCc-cCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHH----h
Confidence 55555555555 34568899998775 2221 1222 23566666777777765543 3456666665555544 3
Q ss_pred CCCceEEEEeccch
Q 048725 236 GRPGPVLIDVPKDI 249 (661)
Q Consensus 236 ~~~GPV~I~iP~dv 249 (661)
...+||+|..|+..
T Consensus 505 ~~~~Pv~ir~~R~~ 518 (641)
T PLN02234 505 IDDRPSCFRYHRGN 518 (641)
T ss_pred CCCCCEEEEeeccc
Confidence 34589999999763
No 226
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=91.25 E-value=4 Score=43.98 Aligned_cols=158 Identities=18% Similarity=0.132 Sum_probs=87.3
Q ss_pred cCCCCCC-CcHHHHHHHHHHHCCC--CEEEeccCCC-----cHHHHHHH-HcCCCCeEEcc-CChhHHHHHHHHHHHHhC
Q 048725 81 RFAPDQP-RKGADILVEALERQGV--TDVFAYPGGA-----SMEIHQAL-TRSNNIRNVLP-RHEQGGIFAAEGYARSSG 150 (661)
Q Consensus 81 ~~~~~~~-~~gad~lv~~L~~~GV--~~vFg~PG~~-----~~~l~~aL-~~~~~i~~v~~-~hE~~A~~~A~Gyar~tg 150 (661)
-|+...+ ++..+++.+.|.++.- +.++.+..+- .+...+.| .+...=|++.+ .-|++++.+|.|.|....
T Consensus 19 ~~~~~~~~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq~~vg~AaGlA~~G~ 98 (356)
T PLN02683 19 GYASAAKEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYAGL 98 (356)
T ss_pred ccCccccccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHHHHHHHHHHHHHCCC
Confidence 3444333 4566666666665542 2455554431 11112222 22211345544 799999999999999888
Q ss_pred CcEEEEEccchhhHHHHHHH-HHhhhCC--------CcEEEEecCCCCcccCCCC-CCCCCHHHHhhccccccc-ccCCc
Q 048725 151 KPGICIATSGPGATNLVSGL-ADALLDS--------VPLVAITGQVPRRMIGTDA-FQETPIVEVTRSITKHNY-LVLDV 219 (661)
Q Consensus 151 ~~gv~~~tsGpG~~N~l~gl-~~A~~~~--------iPll~ItG~~p~~~~g~~~-~q~~~~~~~~~~itk~~~-~v~~~ 219 (661)
||-|++.. .--+..++.-| .++...+ .||+++..+ .. ..|.+. +|..+ ..+++.+-.+.. .+.++
T Consensus 99 ~P~v~~~~-~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~-~~g~G~tH~~~~-~a~lr~iPnl~V~~Pad~ 174 (356)
T PLN02683 99 KPVVEFMT-FNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPN-GA-AAGVGAQHSQCF-AAWYSSVPGLKVLAPYSS 174 (356)
T ss_pred EEEEEEeh-hhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeC-CC-CCCCCCccccCH-HHHHhcCCCCEEEEeCCH
Confidence 87766432 11223444443 2223333 899888633 21 122232 33444 688888866554 35667
Q ss_pred CcHHHHHHHHHHHhhcCCCceEEEEecc
Q 048725 220 DDIPRIVREAFLLATSGRPGPVLIDVPK 247 (661)
Q Consensus 220 ~~i~~~i~~A~~~a~s~~~GPV~I~iP~ 247 (661)
+++..+++.|++. .|||+|..+.
T Consensus 175 ~e~~~~l~~a~~~-----~gPv~ir~~~ 197 (356)
T PLN02683 175 EDARGLLKAAIRD-----PDPVVFLENE 197 (356)
T ss_pred HHHHHHHHHHHhC-----CCcEEEEEeh
Confidence 7777766665532 4899998643
No 227
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.19 E-value=2.1 Score=49.41 Aligned_cols=118 Identities=14% Similarity=0.117 Sum_probs=81.9
Q ss_pred CCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhh
Q 048725 492 PRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFY 570 (661)
Q Consensus 492 p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~ 570 (661)
..+++....-. .+.-+|-|.+... +++.||++-=| ++.-.+..|.+|...+.|+++|.-.-.....
T Consensus 42 ~i~~i~~rhE~---~A~~mAdgyar~t-g~~gv~~vt~GPG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~--------- 108 (574)
T PRK06466 42 KVEHILVRHEQ---AATHMADGYARAT-GKTGVVLVTSGPGATNAITGIATAYMDSIPMVVLSGQVPSTLI--------- 108 (574)
T ss_pred CceEEEeCcHH---HHHHHHHHHHHHh-CCCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEecCCCcccc---------
Confidence 35566554432 2456788877766 56667666544 4455689999999999999999865432110
Q ss_pred cccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 571 KANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 571 ~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
+.. .+. .+|...+.+.+-....+|++++++...+++|+. ..||+.|++..|-
T Consensus 109 ~~~----~~q--------~~d~~~l~~~itk~s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~Dv 165 (574)
T PRK06466 109 GED----AFQ--------ETDMVGISRPIVKHSFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKDM 165 (574)
T ss_pred CCC----ccc--------ccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 000 011 158888888888888899999999888888775 2699999999984
No 228
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=91.17 E-value=2.9 Score=48.00 Aligned_cols=117 Identities=18% Similarity=0.125 Sum_probs=80.4
Q ss_pred CeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhc
Q 048725 493 RQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYK 571 (661)
Q Consensus 493 ~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~ 571 (661)
.+++....- ..+.-+|.|.+... +++.++++-=| ++...++.|..|...++|+++|.-.=..... +
T Consensus 40 i~~i~~~hE---~~A~~~Adgyar~t-g~~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~g~~~~~~~---------~ 106 (558)
T TIGR00118 40 IEHILVRHE---QGAAHAADGYARAS-GKVGVVLVTSGPGATNLVTGIATAYMDSIPMVVFTGQVPTSLI---------G 106 (558)
T ss_pred ceEEEeCcH---HHHHHHHHHHHHHh-CCCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEecCCCcccc---------C
Confidence 456655443 22556788887776 46666666444 4444589999999999999999864322110 0
Q ss_pred ccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 572 ANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 572 ~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
. +..+ ..|...+++.+-....++++++++...+++|+. ..||+.|++..|-
T Consensus 107 ~-------~~~q-----~~d~~~~~~~~tk~~~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~dv 162 (558)
T TIGR00118 107 S-------DAFQ-----EADILGITMPITKHSFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKDV 162 (558)
T ss_pred C-------CCCc-----ccChhhhhcCccceeEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChhh
Confidence 0 0001 157788888888889999999999888888775 2589999998773
No 229
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.12 E-value=0.79 Score=53.08 Aligned_cols=118 Identities=16% Similarity=0.092 Sum_probs=80.4
Q ss_pred CeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEE-CCcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhc
Q 048725 493 RQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDID-GDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYK 571 (661)
Q Consensus 493 ~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~-GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~ 571 (661)
.+++....- +.+.-+|-|.+... +++-+|++ -.-++.-.++.|.+|...+.|+++|.-.-..... +
T Consensus 50 i~~I~~rhE---~~A~~mAdgyar~t-g~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~i~G~~~~~~~---------~ 116 (595)
T PRK09107 50 IQHILVRHE---QGAGHAAEGYARST-GKPGVVLVTSGPGATNAVTPLQDALMDSIPLVCITGQVPTHLI---------G 116 (595)
T ss_pred CeEEEECCh---HHHHHHHHHHHHHh-CCCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEEcCCChhhc---------C
Confidence 455544432 23566778877765 45555554 3445555689999999999999998865432110 1
Q ss_pred ccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhC-----CCcEEEEEEeCCC
Q 048725 572 ANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDT-----PGPYLLDVIFPHQ 635 (661)
Q Consensus 572 ~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~-----~gp~lIeV~~~~~ 635 (661)
.. .+. .+|...+++.+--...+|++++++...+++|++. +||+.|++..|-.
T Consensus 117 ~~----~~q--------~~d~~~l~~~vtk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv~ 173 (595)
T PRK09107 117 SD----AFQ--------ECDTVGITRPCTKHNWLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKDVQ 173 (595)
T ss_pred CC----CCc--------ccchhhhhhhheEEEEEeCCHHHHHHHHHHHHHHhcCCCCceEEEecCCChh
Confidence 10 011 1578888888877888999999999888888762 6999999998753
No 230
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=91.03 E-value=1 Score=52.10 Aligned_cols=106 Identities=16% Similarity=0.096 Sum_probs=75.7
Q ss_pred hHHHHHHhhhhCCCCcEEEEEC-CcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCc
Q 048725 507 GLPAAIGAAVANPDAIIVDIDG-DGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRE 585 (661)
Q Consensus 507 ~lpaAiGaala~p~~~vv~i~G-DGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~ 585 (661)
+..+|-|.+... +++.++++- --++...++.+.+|...+.|+++|.-.-....+ +. ..+.
T Consensus 50 A~~~Adgyar~t-g~~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~G~~~~~~~---------~~----~~~q----- 110 (586)
T PRK06276 50 AAHAADGYARAS-GKVGVCVATSGPGATNLVTGIATAYADSSPVIALTGQVPTKLI---------GN----DAFQ----- 110 (586)
T ss_pred HHHHHHHHHHHh-CCCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEeCCCCcccc---------CC----CCCc-----
Confidence 677888888776 456666654 335555689999999999999998753221100 00 0011
Q ss_pred ccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 586 SEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 586 ~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
.+|...+++.+-....++++++++...+++|+. ..||+.|++..|-
T Consensus 111 ---~~d~~~l~~~~tk~s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv 161 (586)
T PRK06276 111 ---EIDALGIFMPITKHNFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKDV 161 (586)
T ss_pred ---cccHhhHHhhhcceEEecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChhH
Confidence 158888999988888899999999888888775 2689999999873
No 231
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=90.77 E-value=7.2 Score=37.31 Aligned_cols=134 Identities=18% Similarity=0.187 Sum_probs=77.4
Q ss_pred EEeccCCCcHHHHHHHHcCCCCeEEccCChhH---HHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCcEE
Q 048725 106 VFAYPGGASMEIHQALTRSNNIRNVLPRHEQG---GIFAAEGYARSS-GKPGICIATSGPGATNLVSGLADALLDSVPLV 181 (661)
Q Consensus 106 vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~---A~~~A~Gyar~t-g~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll 181 (661)
++.=-|.........+.-...-+++.... .+ +.-+|.|.+.+. +++.+|++-=| ++.-.+..+..|...+.|++
T Consensus 20 iv~d~g~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~lp~aiGaala~~~~~vv~i~GDG-~f~~~~~el~ta~~~~~p~~ 97 (178)
T cd02002 20 IVDEAVTNGLPLRDQLPLTRPGSYFTLRG-GGLGWGLPAAVGAALANPDRKVVAIIGDG-SFMYTIQALWTAARYGLPVT 97 (178)
T ss_pred EEecCCcccHHHHHhcccCCCCCeeccCC-ccccchHHHHHHHHhcCCCCeEEEEEcCc-hhhccHHHHHHHHHhCCCeE
Confidence 34334555554444443222245665555 44 335788988876 56666654333 22333478888888899999
Q ss_pred EEecCCCCccc-------------------CCC-CCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceE
Q 048725 182 AITGQVPRRMI-------------------GTD-AFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPV 241 (661)
Q Consensus 182 ~ItG~~p~~~~-------------------g~~-~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV 241 (661)
+|.-+...... +.+ .....|...+.+.+--...++.+++++.+.+++|++ . .||+
T Consensus 98 ~iV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~----~-~~p~ 172 (178)
T cd02002 98 VVILNNRGYGALRSFLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERVETPEELDEALREALA----E-GGPA 172 (178)
T ss_pred EEEEcCccHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHcCCceEEeCCHHHHHHHHHHHHh----C-CCCE
Confidence 99865542110 000 012356666776664445677776676666666654 2 4899
Q ss_pred EEEec
Q 048725 242 LIDVP 246 (661)
Q Consensus 242 ~I~iP 246 (661)
.|++.
T Consensus 173 vi~v~ 177 (178)
T cd02002 173 LIEVV 177 (178)
T ss_pred EEEEE
Confidence 99874
No 232
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=90.76 E-value=6.6 Score=45.47 Aligned_cols=108 Identities=10% Similarity=0.116 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEecCCCCcc---------cCC---C-CC-CCCCH
Q 048725 138 GIFAAEGYARSS-GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRM---------IGT---D-AF-QETPI 202 (661)
Q Consensus 138 A~~~A~Gyar~t-g~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~~---------~g~---~-~~-q~~~~ 202 (661)
+.-+|.|.+.+. +|+.||++-=| |+.-.++.|..|...++|+++|.-+..... .+. + .+ +..|.
T Consensus 440 glp~aiGa~la~p~r~vv~i~GDG-~f~~~~~el~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~~d~ 518 (588)
T PRK07525 440 AFPAIIGAKIACPDRPVVGFAGDG-AWGISMNEVMTAVRHNWPVTAVVFRNYQWGAEKKNQVDFYNNRFVGTELDNNVSY 518 (588)
T ss_pred HHHHHHHHHHhCCCCcEEEEEcCc-hHhccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHHHhCCCcccccCCCCCCH
Confidence 567789988887 67888887666 444447889999999999999985543211 010 0 12 23577
Q ss_pred HHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 203 VEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 203 ~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
..+.+.+--...++.+++++...+++|+.... ..||+.|++..|
T Consensus 519 ~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~--~~~p~lIev~~~ 562 (588)
T PRK07525 519 AGIAEAMGAEGVVVDTQEELGPALKRAIDAQN--EGKTTVIEIMCN 562 (588)
T ss_pred HHHHHHCCCeEEEECCHHHHHHHHHHHHhcCC--CCCcEEEEEEec
Confidence 77777776566788888888888888776431 247999999987
No 233
>PRK11269 glyoxylate carboligase; Provisional
Probab=90.75 E-value=1.5 Score=50.67 Aligned_cols=118 Identities=17% Similarity=0.146 Sum_probs=80.9
Q ss_pred CeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCccccc-ChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhc
Q 048725 493 RQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIM-NVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYK 571 (661)
Q Consensus 493 ~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~-~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~ 571 (661)
.+++....- ..+.-+|-|.+....+++.+|++-=|--.. .+..+.+|...+.|+++|.-+-..... +
T Consensus 43 i~~v~~rhE---~~A~~mAdGYar~t~g~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~---------~ 110 (591)
T PRK11269 43 IRHILARHV---EGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARL---------H 110 (591)
T ss_pred CcEEeeCCH---HHHHHHHHHHHHHcCCCcEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCcccc---------C
Confidence 445544432 225677888777653567777775554333 478999999999999998865442211 1
Q ss_pred ccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 572 ANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 572 ~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
. ..+. .+|...+.+.+=....+|.+++++...+++|+. ..||+.|++..|-
T Consensus 111 ~----~~~q--------~~d~~~l~~~itk~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 166 (591)
T PRK11269 111 K----EDFQ--------AVDIESIAKPVTKWAVTVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFDV 166 (591)
T ss_pred C----Cccc--------ccChhhHhhcceeEEEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEeChhh
Confidence 0 0011 157888888888888899999998888888775 3589999999874
No 234
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=90.63 E-value=5 Score=41.65 Aligned_cols=148 Identities=14% Similarity=0.085 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHCCCC--EEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHh-CCcEEEEEccchhhHHH
Q 048725 90 GADILVEALERQGVT--DVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS-GKPGICIATSGPGATNL 166 (661)
Q Consensus 90 gad~lv~~L~~~GV~--~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~t-g~~gv~~~tsGpG~~N~ 166 (661)
.-.+|.++|.++|+. ..+-+.|......+....+ .......|- .+.-+|.|...+. +++.||++-=|-...+.
T Consensus 19 i~~~~~~a~~~l~~~p~d~ivvsdiG~~~~~~~~~~---~~~~~~~mG-~alp~AiGaklA~pd~~VVai~GDG~~~~iG 94 (280)
T PRK11869 19 IRNALMKALSELNLKPRQVVIVSGIGQAAKMPHYIN---VNGFHTLHG-RAIPAATAVKATNPELTVIAEGGDGDMYAEG 94 (280)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEeCchHhhhHHHHcc---CCCCCcccc-cHHHHHHHHHHHCCCCcEEEEECchHHhhCc
Confidence 346788888888865 3444444333323222222 222333333 3556777877776 46666655434333334
Q ss_pred HHHHHHhhhCCCcEEEEecCCCCcc-c----------CC-------C-CCCCCCHHHHhhcccccccc---cCCcCcHHH
Q 048725 167 VSGLADALLDSVPLVAITGQVPRRM-I----------GT-------D-AFQETPIVEVTRSITKHNYL---VLDVDDIPR 224 (661)
Q Consensus 167 l~gl~~A~~~~iPll~ItG~~p~~~-~----------g~-------~-~~q~~~~~~~~~~itk~~~~---v~~~~~i~~ 224 (661)
++.|..|...++||++|.-+..... . |. + .....|...+.+.+---... +.+++++.+
T Consensus 95 ~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~ 174 (280)
T PRK11869 95 GNHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKE 174 (280)
T ss_pred HHHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHH
Confidence 8999999999999999975432110 0 00 0 01123455555444211222 456667766
Q ss_pred HHHHHHHHhhcCCCceEEEEec
Q 048725 225 IVREAFLLATSGRPGPVLIDVP 246 (661)
Q Consensus 225 ~i~~A~~~a~s~~~GPV~I~iP 246 (661)
.+++|+.. +||.+|++-
T Consensus 175 ~i~~Al~~-----~Gp~lIeV~ 191 (280)
T PRK11869 175 ILKEAIKH-----KGLAIVDIF 191 (280)
T ss_pred HHHHHHhC-----CCCEEEEEE
Confidence 66666642 599999985
No 235
>PRK08617 acetolactate synthase; Reviewed
Probab=90.55 E-value=1.3 Score=50.86 Aligned_cols=106 Identities=11% Similarity=-0.000 Sum_probs=75.0
Q ss_pred hHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCc
Q 048725 507 GLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRE 585 (661)
Q Consensus 507 ~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~ 585 (661)
+.-+|-|.+... +++.+|++-=| ++.-.+..+.+|...+.|+++|.-.-....+ .. ..+.
T Consensus 54 A~~~A~gyar~t-g~~gv~~vt~GpG~~N~l~gl~~A~~~~~PvlvisG~~~~~~~---------~~----~~~q----- 114 (552)
T PRK08617 54 AAFMAAAIGRLT-GKPGVVLVTSGPGVSNLATGLVTATAEGDPVVAIGGQVKRADR---------LK----RTHQ----- 114 (552)
T ss_pred HHHHHHhHhhhc-CCCEEEEECCCCcHhHhHHHHHHHhhcCCCEEEEecCCccccc---------CC----CCcc-----
Confidence 456777777665 56777777544 3444588999999999999998864332111 00 0111
Q ss_pred ccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 586 SEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 586 ~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
.+|...+++.+--+..++++++++...+++|+. ..||+.||+..|-
T Consensus 115 ---~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 165 (552)
T PRK08617 115 ---SMDNVALFRPITKYSAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQDV 165 (552)
T ss_pred ---ccchhhhhhhhcceEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEeChhhh
Confidence 157778888888788899999998888888775 3589999999874
No 236
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=90.50 E-value=1.6 Score=46.77 Aligned_cols=109 Identities=18% Similarity=0.132 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhCCcEEEEEccchhhHHH---HHHHHHhhhCCCcEEEEecCCCCcccCCC-C--CCCCCHHHHhhccc
Q 048725 137 GGIFAAEGYARSSGKPGICIATSGPGATNL---VSGLADALLDSVPLVAITGQVPRRMIGTD-A--FQETPIVEVTRSIT 210 (661)
Q Consensus 137 ~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~---l~gl~~A~~~~iPll~ItG~~p~~~~g~~-~--~q~~~~~~~~~~it 210 (661)
.|..+|.|..+.. .-.++++..|=|..+. ..++..|...++|+|+|.-+.... .... . ....|...+.+.+-
T Consensus 130 ~AiGaAla~k~~~-~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~-~~~~~~~~~~~~d~~~~a~a~G 207 (341)
T TIGR03181 130 HAAGVAYALKLRG-EDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWA-ISVPRSKQTAAPTLAQKAIAYG 207 (341)
T ss_pred HHHhHHHHHHhhC-CCCEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCCCc-cccchhhhhCCcCHHHHHhhCC
Confidence 4455555544333 2345555667777762 355777889999999998754311 1111 0 11234455555554
Q ss_pred ccccccCCcCc--HHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 211 KHNYLVLDVDD--IPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 211 k~~~~v~~~~~--i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
-....|...+. +.+.+.+|++.|..+. ||+.|++-..
T Consensus 208 ~~~~~Vdg~d~~av~~a~~~A~~~a~~~~-gP~lIev~t~ 246 (341)
T TIGR03181 208 IPGVQVDGNDVLAVYAVTKEAVERARSGG-GPTLIEAVTY 246 (341)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHHHcCC-CCEEEEEEee
Confidence 44556665544 4677888999888765 8999998543
No 237
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=90.48 E-value=1.4 Score=51.06 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=76.7
Q ss_pred hHHHHHHhhhhCCCCcEEEEEC-CcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCc
Q 048725 507 GLPAAIGAAVANPDAIIVDIDG-DGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRE 585 (661)
Q Consensus 507 ~lpaAiGaala~p~~~vv~i~G-DGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~ 585 (661)
+.-+|-|.+....+++-||++- =.++...+..|.+|...+.|+++|.-.-..... +.. .+.
T Consensus 53 A~~mAdgyaR~t~g~~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~G~~~~~~~---------~~~----~~q----- 114 (588)
T TIGR01504 53 ASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARL---------HKE----DFQ----- 114 (588)
T ss_pred HHHHHHHHHHhcCCCeEEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCcccc---------CCC----ccc-----
Confidence 5667777777653456666543 335555689999999999999998864432110 110 011
Q ss_pred ccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 048725 586 SEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPHQ 635 (661)
Q Consensus 586 ~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~~ 635 (661)
.+|...+.+.+-....+|.+++++...+++|+. ..||++|++..|-.
T Consensus 115 ---~~D~~~~~~~vtk~~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv~ 166 (588)
T TIGR01504 115 ---AVDIAAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDVQ 166 (588)
T ss_pred ---ccCHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcchh
Confidence 158888999998888999999999888888875 35899999998853
No 238
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=90.47 E-value=1.4 Score=51.33 Aligned_cols=117 Identities=15% Similarity=0.133 Sum_probs=79.3
Q ss_pred CeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhc
Q 048725 493 RQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYK 571 (661)
Q Consensus 493 ~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~ 571 (661)
.+++....- ..+.-+|-|.+... +++.||++-=| ++...++.|.+|...+.|+++|.-+-....+ +
T Consensus 61 i~~i~~rhE---~~Aa~aA~gyar~t-gk~gv~~~t~GPG~~n~l~gl~~A~~d~~Pvl~i~G~~~~~~~---------~ 127 (616)
T PRK07418 61 LKHILVRHE---QGAAHAADGYARAT-GKVGVCFGTSGPGATNLVTGIATAQMDSVPMVVITGQVPRPAI---------G 127 (616)
T ss_pred ceEEEeccH---HHHHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHHhcCCCEEEEecCCCcccc---------C
Confidence 445544332 22566777877765 56666665433 5666789999999999999999864332111 1
Q ss_pred ccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 572 ANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 572 ~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
. ..+. ..|...+.+.+--...+|++++++..++++|+. ..||++|++..|-
T Consensus 128 ~----~~~Q--------e~d~~~~~~~vtk~~~~v~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~Dv 183 (616)
T PRK07418 128 T----DAFQ--------ETDIFGITLPIVKHSYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKDV 183 (616)
T ss_pred C----CCcc--------cccHHHHhhhcceeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecchhh
Confidence 1 1111 157777888877777899999999888888775 3599999998764
No 239
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=90.43 E-value=1 Score=51.61 Aligned_cols=106 Identities=21% Similarity=0.216 Sum_probs=75.0
Q ss_pred hHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCc
Q 048725 507 GLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRE 585 (661)
Q Consensus 507 ~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~ 585 (661)
+.-+|.|.+... +++.||++-=| ++...+..+..|...+.|+++|.-.-..... +. ..+.
T Consensus 50 A~~~Adgyar~s-g~~gv~~~t~GpG~~n~~~~l~~A~~~~~Pvl~i~g~~~~~~~---------~~----~~~q----- 110 (548)
T PRK08978 50 AAMAAIGYARAT-GKVGVCIATSGPGATNLITGLADALLDSVPVVAITGQVSSPLI---------GT----DAFQ----- 110 (548)
T ss_pred HHHHHHHHHHHh-CCCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCcccc---------CC----CCCc-----
Confidence 667788888776 56777777555 4444589999999999999998864332111 00 0011
Q ss_pred ccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 586 SEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 586 ~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
.+|...+.+.+--+..+|++++++...+++|+. .+||+.||+..|-
T Consensus 111 ---~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 161 (548)
T PRK08978 111 ---EIDVLGLSLACTKHSFLVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKDI 161 (548)
T ss_pred ---ccchhccccCceeeEEEECCHHHHHHHHHHHHHHHhcCCCCcEEEecChhh
Confidence 146677777777778899999998888887775 3589999999874
No 240
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=90.35 E-value=1.1 Score=51.58 Aligned_cols=111 Identities=15% Similarity=0.129 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHh-CCcEEEEEccchhhHHHH-HHHHHhhhCCCcEEEEecCCCCccc---------CC------C----
Q 048725 137 GGIFAAEGYARSS-GKPGICIATSGPGATNLV-SGLADALLDSVPLVAITGQVPRRMI---------GT------D---- 195 (661)
Q Consensus 137 ~A~~~A~Gyar~t-g~~gv~~~tsGpG~~N~l-~gl~~A~~~~iPll~ItG~~p~~~~---------g~------~---- 195 (661)
.+.-+|.|++.++ +|+.+|++-=|--..+.. ..+..|...++|+++|.-+...... +. +
T Consensus 434 ~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~~~~~~~~~~~~~~ 513 (569)
T PRK08327 434 WALGAALGAKLATPDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVYPEGYAARKGTFPG 513 (569)
T ss_pred cchHHHHHHhhcCCCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccchhHHhhhCccccccccccccc
Confidence 3557788888776 677777654332222221 3467788899999999866531110 00 0
Q ss_pred -CC-CCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 196 -AF-QETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 196 -~~-q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
.+ ...|...+.+.+--...++.+++++...+++|+....++. ||+.|++..|
T Consensus 514 ~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~~~~~-gp~liev~v~ 567 (569)
T PRK08327 514 TDFDPRPDFAKIAEAFGGYGERVEDPEELKGALRRALAAVRKGR-RSAVLDVIVD 567 (569)
T ss_pred ccCCCCCCHHHHHHhCCCCceEeCCHHHHHHHHHHHHHHHhcCC-CcEEEEEEcc
Confidence 11 2356667777766667788899999999999987765553 8999999865
No 241
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=90.25 E-value=1.1 Score=46.95 Aligned_cols=110 Identities=17% Similarity=0.230 Sum_probs=72.5
Q ss_pred EEEEcCCcc---chHHHHHHHHHHhCCCeeecCC--CCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCC
Q 048725 294 VLYVGGGCL---NSSEELRKFVELTGIPVASTLM--GLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDR 368 (661)
Q Consensus 294 vIv~G~g~~---~a~~~l~~lae~lg~PV~tt~~--gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~ 368 (661)
+|+.|+... ...+.+.+||+.+|+-|-+|-. -.|.+|.++ ..|..| . .-.+||-|++|-+=--.
T Consensus 197 iVVsgGRG~gs~enf~~i~~LA~~LGa~VGaSRp~vd~gw~p~d~--QVGqTG---k------~V~P~LYIA~GISGAiQ 265 (313)
T COG2025 197 IVVSGGRGLGSKENFKLLEELADVLGAAVGASRPAVDAGWMPNDR--QVGQTG---K------TVAPKLYIALGISGAIQ 265 (313)
T ss_pred EEEEcCcccCChhhhHHHHHHHHHhCceeeccHHHHhcCCCCccc--eecCCC---c------EecccEEEEEecccHHH
Confidence 455555333 3346689999999999987632 267777644 455443 2 33789999999552111
Q ss_pred cCCcccccCCCCeEEEEcCCchhhccCCCCcceEeccHHHHHHHHHHHhc
Q 048725 369 VTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILG 418 (661)
Q Consensus 369 ~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 418 (661)
.. .-......+|-|+.|++.- -+...|+.|++|+..++.+|.+.|.
T Consensus 266 Hl---aGm~~Sk~IVAINkD~nAP-IF~~ADyGiVgDl~~ivP~Lie~l~ 311 (313)
T COG2025 266 HL---AGMKDSKVIVAINKDPNAP-IFQVADYGIVGDLFKIVPALIEALK 311 (313)
T ss_pred HH---hhcccCcEEEEEcCCCCCC-ccccCCeeeeeeHHHHHHHHHHHHh
Confidence 11 1122345688898888641 2456899999999999999998875
No 242
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=90.21 E-value=1.5 Score=50.68 Aligned_cols=106 Identities=16% Similarity=0.142 Sum_probs=74.3
Q ss_pred hHHHHHHhhhhCCCCcEEEEEC-CcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCc
Q 048725 507 GLPAAIGAAVANPDAIIVDIDG-DGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRE 585 (661)
Q Consensus 507 ~lpaAiGaala~p~~~vv~i~G-DGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~ 585 (661)
+.-+|-|.+... +++.|+++- --++.-.+..+.+|...+.|+++|.-.-..... +.. .+.
T Consensus 54 A~~mAdgyar~t-g~~gv~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~G~~~~~~~---------~~~----~~q----- 114 (574)
T PRK06882 54 AVHMADGYARST-GKVGCVLVTSGPGATNAITGIATAYTDSVPLVILSGQVPSNLI---------GTD----AFQ----- 114 (574)
T ss_pred HHHHHHHHHHhh-CCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCcccc---------CCC----ccc-----
Confidence 556777777766 455555553 334555689999999999999998764332110 000 011
Q ss_pred ccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 586 SEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 586 ~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
..|...+.+.+=.+..+|++++++...+++|+. .+||+.|++..|-
T Consensus 115 ---~~d~~~l~~~vtk~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (574)
T PRK06882 115 ---ECDMLGISRPVVKHSFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKDM 165 (574)
T ss_pred ---ccchhhhhhcccceEEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecCHHH
Confidence 157888888888888899999998887877775 4699999999884
No 243
>PRK05899 transketolase; Reviewed
Probab=90.15 E-value=1.2 Score=51.80 Aligned_cols=116 Identities=15% Similarity=0.062 Sum_probs=78.1
Q ss_pred eEEc-cCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEecCCCCccc-CCCCCCCCCHHHH
Q 048725 128 RNVL-PRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMI-GTDAFQETPIVEV 205 (661)
Q Consensus 128 ~~v~-~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~~~-g~~~~q~~~~~~~ 205 (661)
|++. ..-|++++.+|.|+|...+...+| .|..+=+.-++..+..+...+.|++++........- ....+|.+.+..+
T Consensus 368 R~~d~GIaE~~~vg~A~GlA~~G~~~pv~-~t~~~F~~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tHq~~edia~ 446 (624)
T PRK05899 368 RYIHYGVREFAMAAIANGLALHGGFIPFG-GTFLVFSDYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTHQPVEQLAS 446 (624)
T ss_pred CeeeeChhHHHHHHHHHHHHHcCCCeEEE-EEcHHHHHHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCcccHHHHHH
Confidence 4444 578999999999999876233333 455666667777777777889999988643322111 1124577777778
Q ss_pred hhccccccc-ccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 206 TRSITKHNY-LVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 206 ~~~itk~~~-~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
++.+..... .+.+++++..+++.|++. ..+||+|.+|..
T Consensus 447 ~r~iP~~~V~~P~d~~e~~~~l~~a~~~----~~~P~~ir~~r~ 486 (624)
T PRK05899 447 LRAIPNLTVIRPADANETAAAWKYALER----KDGPSALVLTRQ 486 (624)
T ss_pred HHhCCCcEEEeCCCHHHHHHHHHHHHHc----CCCCEEEEEeCC
Confidence 888866543 456777777777666643 258999999864
No 244
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=90.15 E-value=1 Score=42.34 Aligned_cols=103 Identities=12% Similarity=0.044 Sum_probs=65.1
Q ss_pred chHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCc
Q 048725 506 FGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRE 585 (661)
Q Consensus 506 ~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~ 585 (661)
.+..+|-|.+.+. ++ +++++---++...+..|.++...+.|+++|+-+....+.- . . +..+.
T Consensus 52 ~A~~~A~g~~r~~-~~-v~~~~~gpG~~n~~~~l~~a~~~~~P~v~i~g~~~~~~~~---------~-~-~~~~~----- 113 (160)
T cd07034 52 AAAEAAIGASAAG-AR-AMTATSGPGLNLMAEALYLAAGAELPLVIVVAQRPGPSTG---------L-P-KPDQS----- 113 (160)
T ss_pred HHHHHHHHHHhhC-Cc-EEEeeCcchHHHHHHHHHHHHhCCCCEEEEEeeCCCCCCC---------C-C-CcCcH-----
Confidence 3677777877753 33 5444444456667899999999999999999876543210 0 0 00000
Q ss_pred ccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh----CCCcEEEEE
Q 048725 586 SEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD----TPGPYLLDV 630 (661)
Q Consensus 586 ~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~----~~gp~lIeV 630 (661)
..|...+.+. .....++++++|+.+.+++|+. .++|++|-+
T Consensus 114 ---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 114 ---DLMAARYGGH-PWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred ---HHHHHHhCCC-CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 0344445544 4566788999998887777664 357887753
No 245
>PRK12474 hypothetical protein; Provisional
Probab=90.14 E-value=5.7 Score=45.18 Aligned_cols=118 Identities=10% Similarity=-0.063 Sum_probs=79.4
Q ss_pred CeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEE-CCcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhc
Q 048725 493 RQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDID-GDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYK 571 (661)
Q Consensus 493 ~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~-GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~ 571 (661)
.+|+....- ..+.-+|-|.+.+. +++-||++ .--++.-.+..|.+|...+.|+++|+-...... ..
T Consensus 44 i~~i~~rhE---~~A~~mAdgYaR~t-g~~gv~~~t~GpG~~N~~~gl~~A~~d~~Pvl~i~G~~~~~~---------~~ 110 (518)
T PRK12474 44 MRPVLCLFE---GVVTGAADGYGRIA-GKPAVTLLHLGPGLANGLANLHNARRAASPIVNIVGDHAVEH---------LQ 110 (518)
T ss_pred ceEEEecch---HHHHHHHHHHHHHh-CCCEEEEEccchhHhHhHHHHHHHhhcCCCEEEEeccCchhh---------cC
Confidence 456654432 22556777777665 45555444 344556668899999999999999986433110 00
Q ss_pred ccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 048725 572 ANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPHQ 635 (661)
Q Consensus 572 ~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~~ 635 (661)
.. .+. ..|...+++.+-.+..++++++++..++++|+. ..||++|++..|-.
T Consensus 111 ~~----~~q--------~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~Dv~ 167 (518)
T PRK12474 111 YD----APL--------TSDIDGFARPVSRWVHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADVA 167 (518)
T ss_pred CC----Ccc--------ccCHHHhhhcccceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhhh
Confidence 00 000 147888888887788899999999998888884 35899999998853
No 246
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=90.12 E-value=1.5 Score=50.41 Aligned_cols=119 Identities=15% Similarity=0.088 Sum_probs=80.7
Q ss_pred CeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEEC-CcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhc
Q 048725 493 RQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDG-DGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYK 571 (661)
Q Consensus 493 ~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~G-DGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~ 571 (661)
.+++..+.- ..+.-+|-|.+... +++-||++- --++.-.++.+.+|...+.|+++|.-.-..... ...
T Consensus 41 i~~i~~rhE---~~A~~mAdgyar~t-g~~gv~~~t~GPG~~N~~~gia~A~~~~~Pvl~I~G~~~~~~~-------~~~ 109 (554)
T TIGR03254 41 MRYIGFRHE---QSAGYAAAAAGFLT-QKPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSERHIV-------DLQ 109 (554)
T ss_pred CcEEEeCCH---HHHHHHHHHHHHHh-CCCEEEEEccCccHHhHHHHHHHHHhcCCCEEEEEccCCcccc-------ccC
Confidence 455554432 22566777777776 455555553 446666789999999999999999875442100 000
Q ss_pred ccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 572 ANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 572 ~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
. ..+. .+|...+++.+-....++++++++.+.+++|+. .+||+.|++..|-
T Consensus 110 ~----~~~q--------~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~Dv 165 (554)
T TIGR03254 110 Q----GDYE--------EMDQLAAAKPFAKAAYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAAV 165 (554)
T ss_pred C----CCcc--------hhhHHHHhhhhheeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHHH
Confidence 0 0011 158888999998889999999998888887764 3589999998874
No 247
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=90.05 E-value=0.67 Score=47.10 Aligned_cols=69 Identities=12% Similarity=0.077 Sum_probs=49.8
Q ss_pred HHHHhhhcCCEEEEeCCCCCCCcCCcccc--cCCCCeEEEEcCCchhhccCCCCcceEeccHHHHHHHHHHHh
Q 048725 347 YANYAVDKSDLLLAFGVRFDDRVTGKLEA--FASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRIL 417 (661)
Q Consensus 347 ~a~~~l~~aDlvL~vG~~~~~~~t~~~~~--~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 417 (661)
....++.+||++|++|+++.-.....+-. ....+++|.|+.++..... ..++.+.+++..+|..|.+.+
T Consensus 165 ~~~~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~~~~~~--~~~~~i~g~~~~~l~~l~~~~ 235 (242)
T PTZ00408 165 EIESVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEEGTNYS--QFDESIYGKASVIVPAWVDRV 235 (242)
T ss_pred HHHHHHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCCCCCCc--cCCEEEECCHHHHHHHHHHHH
Confidence 34556889999999999986544333322 2246789999999876553 346778899999999887654
No 248
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=90.04 E-value=1.4 Score=46.54 Aligned_cols=111 Identities=14% Similarity=0.097 Sum_probs=72.5
Q ss_pred cEEEEcC-Ccc--chHHHHHHHHHHhCCCeeecCC---CCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCC
Q 048725 293 PVLYVGG-GCL--NSSEELRKFVELTGIPVASTLM---GLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFD 366 (661)
Q Consensus 293 PvIv~G~-g~~--~a~~~l~~lae~lg~PV~tt~~---gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~ 366 (661)
.+|+.|+ |.. ...+.+.+||+.+|.-|-+|-. ..|.+|. ....|..| . .=..|+-|++|.+=.
T Consensus 196 ~vVVsgGRG~~~~E~~~l~eeLA~~LGaavg~SRp~vd~~gW~p~--~~QIGqTG---k------~V~P~lYiA~GISGa 264 (313)
T PRK03363 196 RLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEH--ERYVGISN---L------MLKPELYLAVGISGQ 264 (313)
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHHHhCCeEEecHHHHccCCCCCH--HheecCCC---C------CcCccEEEEEccccH
Confidence 3566654 543 3467899999999999987632 2357764 44444443 2 226799999996621
Q ss_pred CCcCCcccccCCCCeEEEEcCCchhhccCCCCcceEeccHHHHHHHHHHHhc
Q 048725 367 DRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILG 418 (661)
Q Consensus 367 ~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 418 (661)
-... .-......+|-|+.|++.- -+...|+.|++|+.++|..|.+.+.
T Consensus 265 iQH~---~Gm~~s~~IVAIN~Dp~AP-IF~~ADygiVgD~~eilP~L~e~l~ 312 (313)
T PRK03363 265 IQHM---VGANASQTIFAINKDKNAP-IFQYADYGIVGDAVKILPALTAALA 312 (313)
T ss_pred HHHH---hhcccCCEEEEEcCCCCCC-chhhCCeeEeeeHHHHHHHHHHHhh
Confidence 1111 1122345688899888741 1346799999999999999988763
No 249
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=89.99 E-value=0.57 Score=47.05 Aligned_cols=64 Identities=17% Similarity=0.179 Sum_probs=47.1
Q ss_pred HHHhhhcCCEEEEeCCCCCCCcCCcccc--cCCCCeEEEEcCCchhhccCCCCcceEeccHHHHHHHH
Q 048725 348 ANYAVDKSDLLLAFGVRFDDRVTGKLEA--FASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGI 413 (661)
Q Consensus 348 a~~~l~~aDlvL~vG~~~~~~~t~~~~~--~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L 413 (661)
+.+.++++|++|++|+++.-.....+-. ..+++++|.|+.++..+. ...++.+.+|+.++|.+|
T Consensus 158 ~~~~~~~~dl~lvlGTsl~v~p~~~l~~~~~~~~~~~i~iN~~~~~~~--~~~~~~i~g~~~~~l~~l 223 (224)
T cd01412 158 AVEALAKADLFLVIGTSGVVYPAAGLPEEAKERGARVIEINPEPTPLS--PIADFAFRGKAGEVLPAL 223 (224)
T ss_pred HHHHHHcCCEEEEECcCccchhHHHHHHHHHHCCCeEEEECCCCCCCC--CcCCEEEECCHHHHHHHh
Confidence 3456789999999998875443333222 235678999999988665 456889999999999876
No 250
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=89.97 E-value=5.8 Score=45.80 Aligned_cols=159 Identities=10% Similarity=0.108 Sum_probs=94.3
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEecc-CCCcHHHHHHHHcCCCCeEEccCCh----hHHHHHHHHHHHHh-CCcEEEEEcc
Q 048725 86 QPRKGADILVEALERQGVTDVFAYP-GGASMEIHQALTRSNNIRNVLPRHE----QGGIFAAEGYARSS-GKPGICIATS 159 (661)
Q Consensus 86 ~~~~gad~lv~~L~~~GV~~vFg~P-G~~~~~l~~aL~~~~~i~~v~~~hE----~~A~~~A~Gyar~t-g~~gv~~~ts 159 (661)
.+++..+++-+.-+...=+.++..= |+........+.-...-+++.. .- ..+.-+|.|.+.+. +++.+|++-=
T Consensus 379 ~~l~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~p~~~~~~-~~~g~mG~~lpaaiGa~la~p~~~Vv~i~GD 457 (579)
T TIGR03457 379 NWLHPRQVLRELEKAMPEDAIVSTDIGNINSVANSYLRFEKPRKFLAP-MSFGNCGYAFPTIIGAKIAAPDRPVVAYAGD 457 (579)
T ss_pred CCcCHHHHHHHHHHhCCCCeEEEECCchhHHHHHHhcCcCCCCeEEcC-CccccccchHHHHHhhhhhCCCCcEEEEEcc
Confidence 3455544443333334435555543 3333333333332222445532 22 22455788988876 5777776544
Q ss_pred chhhHHHHHHHHHhhhCCCcEEEEecCCCCcc---------cCC----CCCCC-CCHHHHhhcccccccccCCcCcHHHH
Q 048725 160 GPGATNLVSGLADALLDSVPLVAITGQVPRRM---------IGT----DAFQE-TPIVEVTRSITKHNYLVLDVDDIPRI 225 (661)
Q Consensus 160 GpG~~N~l~gl~~A~~~~iPll~ItG~~p~~~---------~g~----~~~q~-~~~~~~~~~itk~~~~v~~~~~i~~~ 225 (661)
|--.. ....|..|...++|+++|.-+..... .+. ..++. .|...+.+.+--+..++.+++++...
T Consensus 458 G~f~m-~~~eL~Tavr~~lpvi~vV~NN~~yg~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~g~~v~~~~el~~a 536 (579)
T TIGR03457 458 GAWGM-SMNEIMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESELSFAGIADAMGAKGVVVDKPEDVGPA 536 (579)
T ss_pred hHHhc-cHHHHHHHHHhCCCeEEEEEECcchHHHHHHHHHhhCCcceeccCCCCCCHHHHHHHCCCeEEEECCHHHHHHH
Confidence 43233 35889999999999998886544211 010 01223 47777777776667789999999888
Q ss_pred HHHHHHHhhcCCCceEEEEeccc
Q 048725 226 VREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 226 i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
+++|++... ..+|+.|++..|
T Consensus 537 l~~a~~~~~--~~~p~lieV~v~ 557 (579)
T TIGR03457 537 LKKAIAAQA--EGKTTVIEIVCT 557 (579)
T ss_pred HHHHHhhCC--CCCcEEEEEEeC
Confidence 888886432 247999999876
No 251
>PLN02470 acetolactate synthase
Probab=89.92 E-value=1.2 Score=51.40 Aligned_cols=117 Identities=17% Similarity=0.096 Sum_probs=80.7
Q ss_pred CeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhc
Q 048725 493 RQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYK 571 (661)
Q Consensus 493 ~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~ 571 (661)
.+++..+.- ..+.-+|-|.+... +++.+|++-=| +....+..+.+|...+.|+++|.-.-....+ +
T Consensus 52 i~~i~~rhE---~~A~~~Adgyar~t-g~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~G~~~~~~~---------~ 118 (585)
T PLN02470 52 IRNVLCRHE---QGEVFAAEGYAKAS-GKVGVCIATSGPGATNLVTGLADALLDSVPLVAITGQVPRRMI---------G 118 (585)
T ss_pred ceEEEeccH---HHHHHHHHHHHHHh-CCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEecCCChhhc---------C
Confidence 556655433 22566788887776 46666666544 3444588999999999999998764432111 0
Q ss_pred ccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 572 ANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 572 ~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
. ..+. ..|...+.+.+--...+|++++++.+.+++|+. .+||+.||+..|-
T Consensus 119 ~----~~~q--------~~d~~~l~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 174 (585)
T PLN02470 119 T----DAFQ--------ETPIVEVTRSITKHNYLVMDVEDIPRVIREAFFLASSGRPGPVLVDIPKDI 174 (585)
T ss_pred C----CcCc--------ccchhhhhhhheEEEEEcCCHHHHHHHHHHHHHHhcCCCCCeEEEEecCch
Confidence 0 0111 157778888888888899999999988888875 3699999999873
No 252
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=89.88 E-value=0.97 Score=48.42 Aligned_cols=112 Identities=21% Similarity=0.259 Sum_probs=73.2
Q ss_pred cEEEEcC-Ccc--chHHHHHHHHHHhCCCeeecC--CCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCC
Q 048725 293 PVLYVGG-GCL--NSSEELRKFVELTGIPVASTL--MGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDD 367 (661)
Q Consensus 293 PvIv~G~-g~~--~a~~~l~~lae~lg~PV~tt~--~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~ 367 (661)
.+||.|+ |.. ...+.+.+||+.+|.-|-+|- --.|.+|. ....|..| . .-.+||-|++|.+=.-
T Consensus 238 ~vVVsgGRGv~~~en~~l~eeLA~~LGaavGaSRp~vD~GW~p~--~~QIGqTG---k------~V~P~lYIA~GISGAi 306 (356)
T PLN00022 238 KVVVTGGRGLKSAENFKMLEKLADKLGGAVGASRAAVDAGFVPN--DLQVGQTG---K------IVAPELYIAVGISGAI 306 (356)
T ss_pred CEEEECCCccCCHHHHHHHHHHHHHhCCceeccHHHHhCCCCCh--HheeccCC---C------CcCCcEEEEEecchHH
Confidence 3666654 554 346789999999999997762 23566654 33344433 2 2368999999966211
Q ss_pred CcCCcccccCCCCeEEEEcCCchhhccCCCCcceEeccHHHHHHHHHHHhcC
Q 048725 368 RVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGG 419 (661)
Q Consensus 368 ~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~ 419 (661)
... .-......+|-|+.|++.- -+...|+.|++|+.++|..|.+.+..
T Consensus 307 QH~---~Gm~~s~~IVAIN~D~~AP-IF~~ADygIVgD~~evlP~Lie~lk~ 354 (356)
T PLN00022 307 QHL---AGMKDSKVIVAINKDADAP-IFQVADYGLVADLFEAVPELLEKLPE 354 (356)
T ss_pred HHH---hhcccCCEEEEECCCCCCC-chhhcCeeEeeeHHHHHHHHHHHHHh
Confidence 111 1122345688898888741 13467999999999999999988753
No 253
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=89.87 E-value=1.6 Score=50.29 Aligned_cols=119 Identities=14% Similarity=0.120 Sum_probs=79.0
Q ss_pred CeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEE-CCcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhc
Q 048725 493 RQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDID-GDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYK 571 (661)
Q Consensus 493 ~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~-GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~ 571 (661)
-+++....- ..+.-+|-|.+... +++.||++ .--++.-.++.|.+|...+.|+++|...-... . .+
T Consensus 48 i~~i~~rhE---~~A~~mAdgyar~t-g~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~-~--------~~ 114 (569)
T PRK09259 48 IRYIGFRHE---QSAGNAAAAAGFLT-QKPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSERE-I--------VD 114 (569)
T ss_pred CCEEeeCCH---HHHHHHHHHHHHHh-CCCEEEEEcCCccHHHHHHHHHHHHhcCCCEEEEEccCCcc-c--------cc
Confidence 455554432 22555667766665 45555555 44566667899999999999999998753311 0 00
Q ss_pred ccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 572 ANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 572 ~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
.. ...+. .+|...+.+.+-....+|++++++...+++|+. .+||+.|++..|-
T Consensus 115 ~~--~~~~q--------~~d~~~~~~~~tk~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 172 (569)
T PRK09259 115 LQ--QGDYE--------ELDQLNAAKPFCKAAFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAKV 172 (569)
T ss_pred cc--CCCcc--------ccchhhhhhhheeeeEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHHH
Confidence 00 00011 157888888888888899999998887777774 3689999999774
No 254
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=89.86 E-value=1.8 Score=49.98 Aligned_cols=117 Identities=16% Similarity=0.106 Sum_probs=78.8
Q ss_pred CeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCccccc-ChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhc
Q 048725 493 RQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIM-NVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYK 571 (661)
Q Consensus 493 ~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~-~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~ 571 (661)
.+++....-. .+.-+|-|.+... +++.||++-=|-... .+..|.+|...++|+++|.-.=.... .+
T Consensus 50 i~~v~~rhE~---~A~~~Adgyar~t-g~~gv~~~t~GpG~~N~~~gl~~A~~~~~Pvl~I~G~~~~~~---------~~ 116 (578)
T PRK06112 50 IRQIAYRTEN---AGGAMADGYARVS-GKVAVVTAQNGPAATLLVAPLAEALKASVPIVALVQDVNRDQ---------TD 116 (578)
T ss_pred CcEEEeccHH---HHHHHHHHHHHHh-CCCEEEEeCCCCcHHHHHHHHHHHhhcCCCEEEEecCCcccc---------CC
Confidence 4455544322 2556777877776 577777775443333 37889999999999999985422110 00
Q ss_pred ccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 572 ANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 572 ~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
. +..+ ..|...+.+.+-....++.+++++...+++|+. ..||+.|++..|-
T Consensus 117 ~-------~~~Q-----~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~Dv 172 (578)
T PRK06112 117 R-------NAFQ-----ELDHIALFQSCTKWVRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPADL 172 (578)
T ss_pred C-------CCcc-----ccChhhhhccccceEEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEcCHhH
Confidence 0 1111 157788899888888899999988887777664 3589999999873
No 255
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=89.84 E-value=1.7 Score=49.80 Aligned_cols=117 Identities=13% Similarity=0.069 Sum_probs=79.0
Q ss_pred CeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhc
Q 048725 493 RQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYK 571 (661)
Q Consensus 493 ~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~ 571 (661)
.+++....-. .+.-+|-|.+.+. +++.+|++-=| +..-.+..+.+|...+.|+++|.-.-....+ .
T Consensus 40 i~~v~~~hE~---~A~~mAdgyar~t-gkpgv~~~t~GPG~~N~l~~l~~A~~~~~Pvl~i~G~~~~~~~---------~ 106 (549)
T PRK06457 40 VKYVQVRHEE---GAALAASVEAKIT-GKPSACMGTSGPGSIHLLNGLYDAKMDHAPVIALTGQVESDMI---------G 106 (549)
T ss_pred CeEEEeCcHH---HHHHHHHHHHHHh-CCCeEEEeCCCCchhhhHHHHHHHHhcCCCEEEEecCCCcccc---------C
Confidence 4555443322 2556777777776 56777666444 5555689999999999999998865321100 0
Q ss_pred ccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh----CCCcEEEEEEeCC
Q 048725 572 ANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD----TPGPYLLDVIFPH 634 (661)
Q Consensus 572 ~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~----~~gp~lIeV~~~~ 634 (661)
+..+. .+|...+.+.+-....++++++++...+++|+. ..||+.|++..|-
T Consensus 107 ----~~~~q--------~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~Dv 161 (549)
T PRK06457 107 ----HDYFQ--------EVNLTKLFDDVAVFNQILINPENAEYIIRRAIREAISKRGVAHINLPVDI 161 (549)
T ss_pred ----CCccc--------ccchhhhhccceeEEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHhH
Confidence 11111 157778888877778899999998887777664 4699999999874
No 256
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=89.83 E-value=8.6 Score=37.08 Aligned_cols=103 Identities=19% Similarity=0.213 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEEccchhhHHH-HHHHHHhhhCCC-cEEEEecCCCCc-ccCCC---CCCCCCHHHHhhccc
Q 048725 137 GGIFAAEGYARSSGKPGICIATSGPGATNL-VSGLADALLDSV-PLVAITGQVPRR-MIGTD---AFQETPIVEVTRSIT 210 (661)
Q Consensus 137 ~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~-l~gl~~A~~~~i-Pll~ItG~~p~~-~~g~~---~~q~~~~~~~~~~it 210 (661)
.+.-+|.|.+.+..++.+|++ |=|.... +..+..|...+. |+++|.-+.... ..+.. .....|...+.+.+-
T Consensus 46 ~~lp~AiGaala~~~~vv~i~--GDG~f~m~~~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~~~~~~~~d~~~lA~a~G 123 (179)
T cd03372 46 LASSIGLGLALAQPRKVIVID--GDGSLLMNLGALATIAAEKPKNLIIVVLDNGAYGSTGNQPTHAGKKTDLEAVAKACG 123 (179)
T ss_pred hHHHHHHHHHhcCCCcEEEEE--CCcHHHhCHHHHHHHHHcCCCCEEEEEEcCccccccCCCCCCCCCCCCHHHHHHHcC
Confidence 344578888877655666654 5555533 678888888875 687776443321 11110 111345566666654
Q ss_pred ccccccC-CcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 211 KHNYLVL-DVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 211 k~~~~v~-~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
-....+. +++++.+.+++ +. .||..|++..|
T Consensus 124 ~~~~~v~~~~~el~~al~~----a~---~gp~lIev~~~ 155 (179)
T cd03372 124 LDNVATVASEEAFEKAVEQ----AL---DGPSFIHVKIK 155 (179)
T ss_pred CCeEEecCCHHHHHHHHHH----hc---CCCEEEEEEEc
Confidence 3344565 55555555544 44 48999999875
No 257
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=89.83 E-value=1.6 Score=50.36 Aligned_cols=117 Identities=16% Similarity=0.039 Sum_probs=79.9
Q ss_pred CeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhc
Q 048725 493 RQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYK 571 (661)
Q Consensus 493 ~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~ 571 (661)
.+++....-. .+.-+|-|.+... +++.||++-=| ++.-.++.+.+|...+.|+++|.-.-..... +
T Consensus 44 i~~i~~rhE~---~A~~~Adgyar~t-g~~gv~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~G~~~~~~~---------~ 110 (572)
T PRK06456 44 LRHVLMRHEQ---AAAHAADGYARAS-GVPGVCTATSGPGTTNLVTGLITAYWDSSPVIAITGQVPRSVM---------G 110 (572)
T ss_pred CeEEEeCcHH---HHHHHHHHHHHhh-CCCEEEEeCCCCCHHHHHHHHHHHHhhCCCEEEEecCCCcccc---------C
Confidence 3455444322 2567788877765 56777775433 4444689999999999999998764332110 0
Q ss_pred ccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 572 ANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 572 ~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
.. .+. ..|...+++.+-....++++++++...+++|+. ..||+.|++..|-
T Consensus 111 ~~----~~q--------~~d~~~i~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 166 (572)
T PRK06456 111 KM----AFQ--------EADAMGVFENVTKYVIGIKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRDI 166 (572)
T ss_pred CC----Ccc--------ccchhhhhhccceeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecChhH
Confidence 00 011 157788888888888999999998888888775 4699999998874
No 258
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=89.81 E-value=1.5 Score=50.54 Aligned_cols=117 Identities=15% Similarity=0.098 Sum_probs=79.4
Q ss_pred CeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEEC-CcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhc
Q 048725 493 RQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDG-DGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYK 571 (661)
Q Consensus 493 ~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~G-DGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~ 571 (661)
.+++....- ..+.-+|-|.+... +++-||++- --++.-.++.+.+|...+.|+++|.-.-..... +
T Consensus 43 i~~v~~rhE---~~A~~mAdgyar~t-g~~gv~~~t~GpG~~n~l~gia~A~~~~~Pvl~i~G~~~~~~~---------~ 109 (572)
T PRK08979 43 IEHILVRHE---QAAVHMADGYARAT-GKVGVVLVTSGPGATNTITGIATAYMDSIPMVVLSGQVPSNLI---------G 109 (572)
T ss_pred CeEEEeCcH---HHHHHHHHHHHHHh-CCCeEEEECCCchHhHHHHHHHHHhhcCCCEEEEecCCCcccc---------C
Confidence 445544332 22567788877776 456565553 334555689999999999999998754321100 0
Q ss_pred ccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 572 ANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 572 ~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
. ..+. ..|...+++.+=....+|++++++...+++|+. ..||+.|++..|-
T Consensus 110 ~----~~~q--------~~d~~~~~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (572)
T PRK08979 110 N----DAFQ--------ECDMIGISRPVVKHSFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKDC 165 (572)
T ss_pred C----CCCc--------ccchhHHhhhceeEEEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecCHhH
Confidence 0 0011 157888888887788899999999888888875 4589999999874
No 259
>PRK05858 hypothetical protein; Provisional
Probab=89.74 E-value=1.8 Score=49.58 Aligned_cols=117 Identities=13% Similarity=0.066 Sum_probs=78.6
Q ss_pred CeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEEC-CcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhc
Q 048725 493 RQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDG-DGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYK 571 (661)
Q Consensus 493 ~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~G-DGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~ 571 (661)
.+++....- ..+.-+|-|.+.+. +++.||++. --++...++.|.+|...+.|+++|.-+-.. .. .+
T Consensus 43 i~~i~~rhE---~~A~~~AdGyar~t-g~~gv~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~g~~~~-~~--------~~ 109 (542)
T PRK05858 43 IRLIDVRHE---QTAAFAAEAWAKLT-RVPGVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLGGRAPA-LR--------WG 109 (542)
T ss_pred CCEEeeccH---HHHHHHHHHHHHhc-CCCeEEEEcCCchHHHHHHHHHHHHhcCCCEEEEeCCCCc-cc--------CC
Confidence 445544332 22667888888776 456665554 445566689999999999999977643221 00 00
Q ss_pred ccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 572 ANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 572 ~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
. +..+ ..|...+.+.+--...++++++++.+.+++|+. ..||+.|++..|-
T Consensus 110 ~-------~~~q-----~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 165 (542)
T PRK05858 110 M-------GSLQ-----EIDHVPFVAPVTKFAATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMDH 165 (542)
T ss_pred C-------CCCc-----ccchhhhhhhhhceEEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcChhh
Confidence 0 0001 157777888888888899999999888887774 3689999998874
No 260
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=89.73 E-value=1.2 Score=51.26 Aligned_cols=106 Identities=20% Similarity=0.130 Sum_probs=73.8
Q ss_pred hHHHHHHhhhhCCCCcEEEEECC-cccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCc
Q 048725 507 GLPAAIGAAVANPDAIIVDIDGD-GSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRE 585 (661)
Q Consensus 507 ~lpaAiGaala~p~~~vv~i~GD-Gsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~ 585 (661)
+.-+|-|.+... +++.+|++-= -+++..++.|.+|...+.|+++|.-.-....+ +. +..+
T Consensus 57 A~~~Adgyar~t-g~~~v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~G~~~~~~~---------~~-------~~~q-- 117 (561)
T PRK06048 57 AAHAADGYARAT-GKVGVCVATSGPGATNLVTGIATAYMDSVPIVALTGQVPRSMI---------GN-------DAFQ-- 117 (561)
T ss_pred HHHHHHHHHHHh-CCCeEEEECCCCcHHHHHHHHHHHhhcCCCEEEEeccCCcccc---------CC-------CCcc--
Confidence 677888888776 4566666543 35555689999999999999998753221100 00 0001
Q ss_pred ccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 586 SEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 586 ~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
..|...+++.+-....+|++++++...+++|+. .+||+.|++..|-
T Consensus 118 ---~~d~~~~~~~itk~s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~dv 168 (561)
T PRK06048 118 ---EADITGITMPITKHNYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKDV 168 (561)
T ss_pred ---ccchhhhccCcceEEEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecChhh
Confidence 157777888877677899999998888888775 3699999998763
No 261
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=89.73 E-value=4.3 Score=38.77 Aligned_cols=114 Identities=13% Similarity=0.048 Sum_probs=68.0
Q ss_pred ccCCC-eEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccC-hHHHH-HHHHc--------CCCeEEEEEeCC
Q 048725 489 YRRPR-QWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMN-VQELA-TIKVE--------KLPIKILLLNNQ 557 (661)
Q Consensus 489 ~~~p~-~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~-~~eL~-ta~~~--------~lpv~ivV~NN~ 557 (661)
-.-|. +++..+- +=-..++.|.|.++. ++++|+-+.=+.|+.- +..|. .++.. ++|++++. ..+
T Consensus 39 ~~~p~~R~~~~gI--aEq~~vg~AaGlA~~--G~~pi~~~~~a~Fl~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~-~~g 113 (167)
T cd07036 39 DKFGPDRVIDTPI--AEAGIVGLAVGAAMN--GLRPIVEIMFADFALPAFDQIVNEAAKLRYMSGGQFKVPIVIRG-PNG 113 (167)
T ss_pred HhCCCceEEeCCC--cHHHHHHHHHHHHHc--CCEEEEEeehHHHHHHHHHHHHHHHHHHHHhcCCCccCCEEEEE-eCC
Confidence 34566 7775421 111257888887775 5566655455667653 22232 23323 58888876 555
Q ss_pred cchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHc-CCCEeeeCCHHHHHHHHHHHHhCCCcEEEE
Q 048725 558 HLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEAC-GIPGAQVTRKADLRAAIQTMLDTPGPYLLD 629 (661)
Q Consensus 558 g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lIe 629 (661)
+++. ... .|. ..+..+-+++ |+..+...++.|++.+++.+++.++|++|-
T Consensus 114 g~~~---------~G~-ths------------~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~~~~~~P~~~~ 164 (167)
T cd07036 114 GGIG---------GGA-QHS------------QSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIRDDDPVIFL 164 (167)
T ss_pred CCCC---------cCh-hhh------------hhHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 5431 010 010 1223555555 677778899999999999999999998763
No 262
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=89.72 E-value=5 Score=46.17 Aligned_cols=117 Identities=13% Similarity=0.058 Sum_probs=78.5
Q ss_pred CeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhc
Q 048725 493 RQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYK 571 (661)
Q Consensus 493 ~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~ 571 (661)
.+++....- ..+.-+|-|.+... +++.+|++.=| ++.-.+..|..|...+.|+++|.-.-..... +
T Consensus 52 i~~i~~~hE---~~A~~~Adgyar~t-g~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~---------~ 118 (564)
T PRK08155 52 IRHILARHE---QGAGFIAQGMARTT-GKPAVCMACSGPGATNLVTAIADARLDSIPLVCITGQVPASMI---------G 118 (564)
T ss_pred ceEEEeccH---HHHHHHHHHHHHHc-CCCeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEeccCCcccc---------c
Confidence 455544332 22566788888776 56766665433 4444689999999999999998754332110 0
Q ss_pred ccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 572 ANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 572 ~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
. ..+. .+|...+++.+-....++++++++...+++|++ .+||+.||+..|-
T Consensus 119 ~----~~~q--------~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~Dv 174 (564)
T PRK08155 119 T----DAFQ--------EVDTYGISIPITKHNYLVRDIEELPQVISDAFRIAQSGRPGPVWIDIPKDV 174 (564)
T ss_pred C----CCcc--------ccchhhhhhccceEEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 0 0011 157777888877778899999998888887775 2599999998764
No 263
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=89.68 E-value=1.4 Score=50.34 Aligned_cols=107 Identities=15% Similarity=0.069 Sum_probs=76.2
Q ss_pred chHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCC
Q 048725 506 FGLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSR 584 (661)
Q Consensus 506 ~~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~ 584 (661)
.+.-+|-|.+... +++-||+.==| ++...+..|.+|...+.|+++|.-.=....+ +. ..|.
T Consensus 50 ~Aa~mAdgyar~T-GkpgV~~~tsGPGatN~~tgla~A~~d~~Pll~itGqv~~~~~---------g~----~afQ---- 111 (550)
T COG0028 50 GAAFAADGYARAT-GKPGVCLVTSGPGATNLLTGLADAYMDSVPLLAITGQVPTSLI---------GT----DAFQ---- 111 (550)
T ss_pred HHHHHHHHHHHHc-CCCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEeCCcccccc---------Cc----chhh----
Confidence 3677888887776 45545544333 5566689999999999999998762111100 11 1111
Q ss_pred cccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 585 ESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 585 ~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
..|...+.+.+=-+.++|.+++++...+++|++ ..||++|++.-|-
T Consensus 112 ----e~D~~~l~~p~tk~~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~Dv 162 (550)
T COG0028 112 ----EVDQVGLFRPITKYNFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDV 162 (550)
T ss_pred ----hcchhhHhhhhheeEEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcChhH
Confidence 158999999998899999999999998888875 4589999988764
No 264
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=89.63 E-value=3.4 Score=47.68 Aligned_cols=151 Identities=17% Similarity=0.145 Sum_probs=90.2
Q ss_pred CcHHHHHHHHHHHCCCC--EEEec----cCCCcHHHHHHHH-cCCCCeEEc-cCChhHHHHHHHHHHHHhCCcEEEEEcc
Q 048725 88 RKGADILVEALERQGVT--DVFAY----PGGASMEIHQALT-RSNNIRNVL-PRHEQGGIFAAEGYARSSGKPGICIATS 159 (661)
Q Consensus 88 ~~gad~lv~~L~~~GV~--~vFg~----PG~~~~~l~~aL~-~~~~i~~v~-~~hE~~A~~~A~Gyar~tg~~gv~~~ts 159 (661)
++..+++.+.|.+..-+ .++.+ +|... + +.+. +.++ |++. ..-|++++.+|.|.|...-||-+ .+.
T Consensus 278 ~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~~~~--~-~~f~~~fP~-R~id~GIaEq~~v~~AaGlA~~G~~Pvv--~~f 351 (581)
T PRK12315 278 ESYSSVTLDYLLKKIKEGKPVVAINAAIPGVFG--L-KEFRKKYPD-QYVDVGIAEQESVAFASGIAANGARPVI--FVN 351 (581)
T ss_pred cCHHHHHHHHHHHHhccCCCEEEEeCccccccC--c-HHHHHhccc-cccCCCchHHHHHHHHHHHHHCcCeEEE--Eee
Confidence 34556666666654332 33333 33332 2 3332 2332 4443 37999999999999985544544 444
Q ss_pred chhhHHHHHHH-HHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhccccccc-ccCCcCcHHHHHHHHHHHhhcCC
Q 048725 160 GPGATNLVSGL-ADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNY-LVLDVDDIPRIVREAFLLATSGR 237 (661)
Q Consensus 160 GpG~~N~l~gl-~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~-~v~~~~~i~~~i~~A~~~a~s~~ 237 (661)
.+=+.-++--| .++...+.||+++........ .-..+|.+.+..+++.+..... .+.++.++..+++.|++ ..
T Consensus 352 s~Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~~-dG~TH~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~ 426 (581)
T PRK12315 352 STFLQRAYDQLSHDLAINNNPAVMIVFGGSISG-NDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEWALT----QH 426 (581)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEECCcccC-CCccccccHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHh----CC
Confidence 55444555533 335678999998864222221 2234677777899999877655 35566666666655553 33
Q ss_pred CceEEEEeccch
Q 048725 238 PGPVLIDVPKDI 249 (661)
Q Consensus 238 ~GPV~I~iP~dv 249 (661)
.|||+|.+|...
T Consensus 427 ~gP~~ir~~r~~ 438 (581)
T PRK12315 427 EHPVAIRVPEHG 438 (581)
T ss_pred CCcEEEEEcCCc
Confidence 599999999763
No 265
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=89.63 E-value=1.4 Score=48.60 Aligned_cols=128 Identities=19% Similarity=0.227 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHH---HHhCCCeeecCCCCCCCCCCCCCCCcccCCCC---------
Q 048725 279 HLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFV---ELTGIPVASTLMGLGSFPGTDELSLQMLGMHG--------- 344 (661)
Q Consensus 279 ~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~la---e~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g--------- 344 (661)
..++++++|..|+|.+|+-|+|-. .+..++++++ |+-|.-|-- .-||-.-.+.|+..
T Consensus 296 ~~~~~a~~l~~A~~VvIVPGYGmAvAqAQ~~v~el~~~L~~~G~~V~f---------aIHPVAGRMPGHMNVLLAEa~Vp 366 (463)
T PF02233_consen 296 SAEEVAEMLANAKKVVIVPGYGMAVAQAQHAVAELADLLEERGVEVKF---------AIHPVAGRMPGHMNVLLAEANVP 366 (463)
T ss_dssp SHHHHHHHHHH-SEEEEEESHHHHHCTTHHHHHHHHHHHHHTT-EEEE---------EE-TTSSSSTTHHHHHHHHCT--
T ss_pred CHHHHHHHHHhcCceEEecCchHHHHHHHHHHHHHHHHHHhCCCEEEE---------EeccccCCCCCcceEEEEecCCC
Confidence 356888999999999999999864 5555555555 455655511 12665444444321
Q ss_pred ------cHHHHHhhhcCCEEEEeCCCCC-------CCcC--Cc---ccccCCCCeEEEEcCCch--hhcc-----CCCCc
Q 048725 345 ------TVYANYAVDKSDLLLAFGVRFD-------DRVT--GK---LEAFASRAKIVHIDIDSA--EIGK-----NKQPH 399 (661)
Q Consensus 345 ------~~~a~~~l~~aDlvL~vG~~~~-------~~~t--~~---~~~~~~~~~vi~Id~d~~--~i~~-----~~~~~ 399 (661)
-+..|.-+.+.|++|++|..-. +..+ .+ ++-| +.+++|.+-.+-. .-|- .++..
T Consensus 367 Yd~~~emdeiN~~f~~~Dv~lViGANDvVNPaA~~d~~SpI~GMPil~v~-~ak~Viv~Krsm~~Gyagv~NpLF~~~nt 445 (463)
T PF02233_consen 367 YDIVKEMDEINPDFPDTDVVLVIGANDVVNPAAREDPNSPIYGMPILEVW-KAKQVIVIKRSMSPGYAGVDNPLFYKDNT 445 (463)
T ss_dssp GGGEEEHHHHGGGGGG-SEEEEES-SGGG-CHHCCSTTSTTTTSS---GG-GSSEEEEEESSS--TTTS-S-GGGGSTTE
T ss_pred HHHHhhhhhcccchhcCCEEEEeccccccCchhccCCCCCCCCCeecchh-hcCeEEEEEcCCCCCCCCCCCcceecCCc
Confidence 1234566889999999996521 1111 11 1112 2345665543321 1121 12334
Q ss_pred ceEeccHHHHHHHHHHH
Q 048725 400 VSVCADLKLALKGINRI 416 (661)
Q Consensus 400 ~~i~~D~~~~L~~L~~~ 416 (661)
.-+.+|+|+.+++|...
T Consensus 446 ~MlfGDAk~~~~~l~~~ 462 (463)
T PF02233_consen 446 RMLFGDAKKTLEELVAE 462 (463)
T ss_dssp EEEES-HHHHHHHHHHH
T ss_pred EEEeccHHHHHHHHHHh
Confidence 56899999999998764
No 266
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=89.53 E-value=0.7 Score=48.24 Aligned_cols=69 Identities=19% Similarity=0.145 Sum_probs=50.3
Q ss_pred HHHhhhcCCEEEEeCCCCCCCcCCcc-cc-cCCCCeEEEEcCCchhhccCCCCcceEeccHHHHHHHHHHHhc
Q 048725 348 ANYAVDKSDLLLAFGVRFDDRVTGKL-EA-FASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILG 418 (661)
Q Consensus 348 a~~~l~~aDlvL~vG~~~~~~~t~~~-~~-~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 418 (661)
+.+.++++|++|+||+++.-.....+ .. ...+.++|.|+.++...... .++.|.+|+.++|..|.+.|.
T Consensus 208 a~~~~~~~DlllvvGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~~~~~--~~~~i~g~~~evL~~l~~~l~ 278 (285)
T PRK05333 208 ARAALDAADAVLVVGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTRADPL--LTLKVEASCAQALAALVARLG 278 (285)
T ss_pred HHHHHhcCCEEEEECcCceecchhhhHHHHHHCCCeEEEECCCCCCCCcc--eeEEEeCCHHHHHHHHHHHhC
Confidence 45567899999999999864432221 11 12356899999988765542 378999999999999988765
No 267
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=89.52 E-value=2.1 Score=49.17 Aligned_cols=106 Identities=9% Similarity=-0.014 Sum_probs=74.6
Q ss_pred hHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCc
Q 048725 507 GLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRE 585 (661)
Q Consensus 507 ~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~ 585 (661)
+.-+|.|.+.+. +++.+|++-=| +....+..|.+|...+.|+++|.-.=.... .+.. .+ +
T Consensus 58 A~~~Adgyar~t-g~~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~g~~~~~~---------~~~~----~~---q-- 118 (557)
T PRK08199 58 AAMMAEAYGKLT-GRPGICFVTRGPGATNASIGVHTAFQDSTPMILFVGQVARDF---------RERE----AF---Q-- 118 (557)
T ss_pred HHHHHHHHHHhc-CCCEEEEeCCCccHHHHHHHHHHHhhcCCCEEEEecCCcccc---------CCCC----cc---c--
Confidence 667888888776 56777777544 444458999999999999999875322110 0100 01 1
Q ss_pred ccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 586 SEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 586 ~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
..|...+.+.+=-+..+|++++++...+++|+. ..||+.|++..|-
T Consensus 119 ---~~d~~~l~~~~tk~~~~v~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~dl 169 (557)
T PRK08199 119 ---EIDYRRMFGPMAKWVAEIDDAARIPELVSRAFHVATSGRPGPVVLALPEDV 169 (557)
T ss_pred ---ccCHHHhhhhhhceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 157777888777778899999998888887775 3589999998774
No 268
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=89.44 E-value=3.9 Score=47.07 Aligned_cols=118 Identities=14% Similarity=0.169 Sum_probs=79.9
Q ss_pred CeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhc
Q 048725 493 RQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYK 571 (661)
Q Consensus 493 ~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~ 571 (661)
.+++..+.- ..+.-+|-|.+... +++-+|++-=| +....++.|.+|...+.|+++|.-.-....+ +
T Consensus 49 i~~i~~rhE---~~A~~~Adgyar~t-g~~gv~~~t~GPG~~n~~~gla~A~~~~~Pvl~i~G~~~~~~~---------~ 115 (566)
T PRK07282 49 IRHILARHE---QGALHEAEGYAKST-GKLGVAVVTSGPGATNAITGIADAMSDSVPLLVFTGQVARAGI---------G 115 (566)
T ss_pred ceEEEecCH---HHHHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecccccccC---------C
Confidence 456655432 23567778877765 45555555333 4555689999999999999999865443221 0
Q ss_pred ccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 048725 572 ANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPHQ 635 (661)
Q Consensus 572 ~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~~ 635 (661)
.. .+. ..|...+++.+-....++++++++..++.+|+. .+||+.|++..|-.
T Consensus 116 ~~----~~q--------~~d~~~~~~~itk~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~ 172 (566)
T PRK07282 116 KD----AFQ--------EADIVGITMPITKYNYQIRETADIPRIITEAVHIATTGRPGPVVIDLPKDVS 172 (566)
T ss_pred CC----Ccc--------ccChhchhcCCCceeEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCChhhh
Confidence 00 011 147777888888888899999998888888775 25899999988743
No 269
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=89.31 E-value=4.9 Score=46.91 Aligned_cols=149 Identities=16% Similarity=0.141 Sum_probs=89.4
Q ss_pred CcHHHHHHHHHHHCCC--CEEEec----cCCC-cHHHHHHHHcCCCCeEE-ccCChhHHHHHHHHHHHHhCCcEEEEEcc
Q 048725 88 RKGADILVEALERQGV--TDVFAY----PGGA-SMEIHQALTRSNNIRNV-LPRHEQGGIFAAEGYARSSGKPGICIATS 159 (661)
Q Consensus 88 ~~gad~lv~~L~~~GV--~~vFg~----PG~~-~~~l~~aL~~~~~i~~v-~~~hE~~A~~~A~Gyar~tg~~gv~~~ts 159 (661)
++..+++.+.|.+..- +.|+++ +++. ...|.+. .|+ |++ ...-|++++.+|.|.|...-||.|++-
T Consensus 381 ~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gtgl~~f~~~---fPd-RffDvGIAEQhaVt~AAGLA~~G~kPvv~iy-- 454 (701)
T PLN02225 381 RTYSDCFVEALVMEAEKDRDIVVVHAGMEMDASLITFQER---FPD-RFFNVGMAEQHAVTFSAGLSSGGLKPFCIIP-- 454 (701)
T ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCccCcccHHHHHHH---ccc-cccccCccHHHHHHHHHHHHHCCCEEEEEee--
Confidence 4566666666655432 344443 3322 2233332 232 333 347999999999999987777766643
Q ss_pred chhhHHHHHHHHH-hhhCCCcEEEEecCCCCcccCC-C-CCCCCCHHHHhhcccccccc-cCCcCcHHHHHHHHHHHhhc
Q 048725 160 GPGATNLVSGLAD-ALLDSVPLVAITGQVPRRMIGT-D-AFQETPIVEVTRSITKHNYL-VLDVDDIPRIVREAFLLATS 235 (661)
Q Consensus 160 GpG~~N~l~gl~~-A~~~~iPll~ItG~~p~~~~g~-~-~~q~~~~~~~~~~itk~~~~-v~~~~~i~~~i~~A~~~a~s 235 (661)
.+=+.-++--|.. +...+.||.++. ++. ...|. + .+|.+....+++.+..+... +.+++++..+++.|+.
T Consensus 455 stFlqRAyDQI~~Dval~~lpV~~vi-d~a-Glvg~DG~TH~g~~Dia~lr~IPnm~V~aPsD~~El~~mL~~A~~---- 528 (701)
T PLN02225 455 SAFLQRAYDQVVHDVDRQRKAVRFVI-TSA-GLVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVATAAY---- 528 (701)
T ss_pred hhHHHHHHHHHHHHHHhhcCCceEEE-ECC-ccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh----
Confidence 3444455554433 567778877664 332 22332 2 35656667888888766553 5566777777666553
Q ss_pred CCCceEEEEeccc
Q 048725 236 GRPGPVLIDVPKD 248 (661)
Q Consensus 236 ~~~GPV~I~iP~d 248 (661)
...|||+|..|..
T Consensus 529 ~~~gPv~IR~pRg 541 (701)
T PLN02225 529 VTDRPVCFRFPRG 541 (701)
T ss_pred cCCCCEEEEeccc
Confidence 2358999999986
No 270
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=89.20 E-value=1.5 Score=46.21 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=72.3
Q ss_pred EEEEcC-Ccc--chHHHHHHHHHHhCCCeeecCC---CCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCC
Q 048725 294 VLYVGG-GCL--NSSEELRKFVELTGIPVASTLM---GLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDD 367 (661)
Q Consensus 294 vIv~G~-g~~--~a~~~l~~lae~lg~PV~tt~~---gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~ 367 (661)
+|+.|+ |.. ...+.+.+||+.+|.-|-+|-. ..|.+|.++ ..|. .|. .=..|+-|++|.+=.-
T Consensus 196 vVV~~GrG~~~~e~~~~~~~LA~~LGaavG~SRp~vd~~gW~p~~~--QIGq---TGk------~V~P~lYiA~GISGAi 264 (312)
T PRK11916 196 RVVGVGRGLAAQDDLKMVHELAAVLNAEVGCSRPIAEGENWMERER--YIGV---SGV------LLKSDLYLTLGISGQI 264 (312)
T ss_pred EEEECCCCCCChHHHHHHHHHHHHhCCEEEecHHHHccCCCCChhc--EECC---CCC------CcCccEEEEeccccHH
Confidence 555554 554 3468899999999999987632 235776533 3443 332 2267999999966211
Q ss_pred CcCCcccccCCCCeEEEEcCCchhhccCCCCcceEeccHHHHHHHHHHHhc
Q 048725 368 RVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILG 418 (661)
Q Consensus 368 ~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 418 (661)
.... -......+|-|+.|++.- -+...|+.|++|+.++|.+|.+.+.
T Consensus 265 QH~a---Gm~~s~~IVAIN~Dp~AP-IF~~ADygiVgD~~~vlP~L~e~l~ 311 (312)
T PRK11916 265 QHMV---GGNGAKVIVAINKDKNAP-IFNYADYGLVGDIYKVVPALISQLS 311 (312)
T ss_pred HHHh---hcccCCEEEEECCCCCCC-chhhCCeeEeeeHHHHHHHHHHHhh
Confidence 1111 122345688999988741 1346799999999999999988763
No 271
>PRK08266 hypothetical protein; Provisional
Probab=89.18 E-value=5.9 Score=45.29 Aligned_cols=121 Identities=13% Similarity=0.021 Sum_probs=79.8
Q ss_pred CCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhh
Q 048725 492 PRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFY 570 (661)
Q Consensus 492 p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~ 570 (661)
..+++....- ..+.-+|.|.+... +++.||++-=| ++...+..+..|...+.|+++|.-.=..+.+
T Consensus 43 ~i~~v~~~hE---~~A~~~A~gyar~t-g~~~v~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~g~~~~~~~--------- 109 (542)
T PRK08266 43 RIRVIHTRHE---QAAGYMAFGYARST-GRPGVCSVVPGPGVLNAGAALLTAYGCNSPVLCLTGQIPSALI--------- 109 (542)
T ss_pred CCeEEeeccH---HHHHHHHHHHHHHh-CCCeEEEECCCCcHHHHHHHHHHHHhhCCCEEEEecCCChhhc---------
Confidence 3555554332 22556888888776 45666665333 4555689999999999999998753221100
Q ss_pred cccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 571 KANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 571 ~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
+.. .. .+ +..+|...+.+.+-.+..++++++++...+++|+. ..||++|++..|-
T Consensus 110 ~~~-~~-~~-------~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~dv 169 (542)
T PRK08266 110 GKG-RG-HL-------HEMPDQLATLRSFTKWAERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWDV 169 (542)
T ss_pred cCC-CC-cc-------eecccHhhHHhhhcceEEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEeCHhH
Confidence 000 00 00 00147888888888888999999998888887774 4689999999874
No 272
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=89.11 E-value=1.9 Score=47.31 Aligned_cols=117 Identities=13% Similarity=0.193 Sum_probs=64.7
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEcCCcc-chHHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCCcHHHHHhh
Q 048725 274 EPSEVHLEQIVRLISESKKPVLYVGGGCL-NSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAV 352 (661)
Q Consensus 274 ~~~~~~l~~~~~~L~~AkrPvIv~G~g~~-~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l 352 (661)
...++.++.+++.|+++++++++.|+... .....+.+|++.+|..+-. .......+....+ ...|.... ...++.
T Consensus 60 isWdeAl~~ia~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~~~g~~~~~-~~~~~~~~~~~~~--~~~g~~~~-~~~di~ 135 (421)
T TIGR03129 60 VSYEEAIEKAAEILKNAKRPLIYGWSSTSCEAQRAGLELAEKLGAVIDN-TASVCHGPSLLAL--QEVGWPSC-TLGEVK 135 (421)
T ss_pred CChHHHHHHHHHHHHhhcCCeEEEcccCCHHHHHHHHHHHHHHCCCccc-cchhccccHHHHH--HhcCCccc-cHHHHh
Confidence 35788999999999999888776555443 3345678999998864311 0000000000000 00111111 122333
Q ss_pred hcCCEEEEeCCCCCCCcCCcc-----------ccc-CCCCeEEEEcCCchhhcc
Q 048725 353 DKSDLLLAFGVRFDDRVTGKL-----------EAF-ASRAKIVHIDIDSAEIGK 394 (661)
Q Consensus 353 ~~aDlvL~vG~~~~~~~t~~~-----------~~~-~~~~~vi~Id~d~~~i~~ 394 (661)
+++|+||++|+.+.+.....+ ... ....++|.||........
T Consensus 136 ~~ad~il~~G~n~~~~~p~~~~r~~~~~~~~~~~~~~~g~~lividp~~s~t~~ 189 (421)
T TIGR03129 136 NRADVIIYWGTNPMHAHPRHMSRYSVFPRGFFTQRGREDRTVIVVDPRKTDTAK 189 (421)
T ss_pred hcCCEEEEEccCccccCchHHhhhhhhhhhhhhhcccCCCEEEEECCCCCCcch
Confidence 579999999998754321111 111 334689999987665543
No 273
>PRK07064 hypothetical protein; Provisional
Probab=89.07 E-value=2.5 Score=48.39 Aligned_cols=109 Identities=14% Similarity=0.144 Sum_probs=73.6
Q ss_pred hHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCc
Q 048725 507 GLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRE 585 (661)
Q Consensus 507 ~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~ 585 (661)
+.-+|.|.+.+. +++.||++-=| +..-.+..|.+|...+.|+++|.-+=....+ ... ..++..
T Consensus 53 A~~~A~gyar~t-g~~~v~~~t~GpG~~N~~~~i~~A~~~~~Pvl~i~g~~~~~~~---------~~~--~~~~~~---- 116 (544)
T PRK07064 53 AVNMADAHARVS-GGLGVALTSTGTGAGNAAGALVEALTAGTPLLHITGQIETPYL---------DQD--LGYIHE---- 116 (544)
T ss_pred HHHHHHHHHHhc-CCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcccc---------cCC--Cccccc----
Confidence 566788887776 45555555333 4444688999999999999998864221100 000 000000
Q ss_pred ccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 586 SEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 586 ~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
.+|...+++.+=-...++++++++..++++|+. .+||+.|++..|-
T Consensus 117 ---~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (544)
T PRK07064 117 ---APDQLTMLRAVSKAAFRVRSAETALATIREAVRVALTAPTGPVSVEIPIDI 167 (544)
T ss_pred ---ccCHHHHhhhhcceEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEeCHhH
Confidence 147888888887788899999998877777764 3699999999874
No 274
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=88.89 E-value=2.2 Score=49.31 Aligned_cols=117 Identities=15% Similarity=0.108 Sum_probs=78.2
Q ss_pred CeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEE-CCcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhc
Q 048725 493 RQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDID-GDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYK 571 (661)
Q Consensus 493 ~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~-GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~ 571 (661)
.+++....-. .+.-+|-|.+... +++.||++ .--+++..++.|.+|...+.|+++|.-.=.... .+
T Consensus 60 i~~i~~rhE~---~A~~~AdgYar~t-g~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~---------~~ 126 (587)
T PRK06965 60 IQHVLVRHEQ---AAVHAADGYARAT-GKVGVALVTSGPGVTNAVTGIATAYMDSIPMVVISGQVPTAA---------IG 126 (587)
T ss_pred CeEEEeCCHH---HHHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccc---------cC
Confidence 4555544322 2556888888776 44545444 444666678999999999999999874221100 00
Q ss_pred ccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 572 ANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 572 ~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
. ..+. .+|...+.+.+--...+|.+++++...+++|+. ..||+.|++..|-
T Consensus 127 ~----~~~q--------~~d~~~l~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 182 (587)
T PRK06965 127 Q----DAFQ--------ECDTVGITRPIVKHNFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKDV 182 (587)
T ss_pred C----CCcc--------cccHHHHhcCCcceeEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChhh
Confidence 0 0111 157888888888888999999988877777764 3589999999884
No 275
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=88.69 E-value=1.9 Score=49.51 Aligned_cols=106 Identities=19% Similarity=0.188 Sum_probs=73.1
Q ss_pred hHHHHHHhhhhCCCCcEEEEE-CCcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCc
Q 048725 507 GLPAAIGAAVANPDAIIVDID-GDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRE 585 (661)
Q Consensus 507 ~lpaAiGaala~p~~~vv~i~-GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~ 585 (661)
+.-+|-|.+... +++-+|++ ---+++-.+..+..|...+.|+++|.-.=.... .+. ..+.
T Consensus 53 A~~~Adgyar~t-g~~gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~G~~~~~~---------~~~----~~~q----- 113 (563)
T PRK08527 53 AVHAADGYARAS-GKVGVAIVTSGPGFTNAVTGLATAYMDSIPLVLISGQVPNSL---------IGT----DAFQ----- 113 (563)
T ss_pred HHHHHHHHHhhh-CCCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccc---------cCC----CCCc-----
Confidence 667788877766 44555454 334555568999999999999998874211100 000 0111
Q ss_pred ccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 586 SEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 586 ~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
.+|...+.+.+--...+|++++++..+|++|+. ..||+.|++..|-
T Consensus 114 ---~~d~~~~~~~~tk~s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~Dv 164 (563)
T PRK08527 114 ---EIDAVGISRPCVKHNYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKDV 164 (563)
T ss_pred ---ccchhhhhhcccceEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 157777888887777899999999999988875 3489999999774
No 276
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=88.64 E-value=1.9 Score=49.24 Aligned_cols=106 Identities=13% Similarity=0.021 Sum_probs=72.5
Q ss_pred hHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCc
Q 048725 507 GLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRE 585 (661)
Q Consensus 507 ~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~ 585 (661)
+.-+|-|.+... +++.+|++-=| ++.-.+..|.+|...+.|+++|.-.-..... ... .+.
T Consensus 48 A~~~Adgyar~t-g~~gv~~~t~GpG~~n~l~gl~~A~~~~~Pvl~I~G~~~~~~~---------~~~----~~q----- 108 (539)
T TIGR02418 48 AAFMAQAVGRIT-GKPGVALVTSGPGCSNLVTGLATANSEGDPVVAIGGQVKRADL---------LKL----THQ----- 108 (539)
T ss_pred HHHHHHHHHHHh-CCceEEEECCCCCHhHHHHHHHHHhhcCCCEEEEeCCCccccc---------ccC----ccc-----
Confidence 455777777766 45555555433 4555688999999999999999864322110 000 011
Q ss_pred ccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 586 SEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 586 ~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
.+|...+++.+=....++++++++...+++|++ ..||+.|++..|-
T Consensus 109 ---~~d~~~~~~~~tk~~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~dv 159 (539)
T TIGR02418 109 ---SMDNVALFRPITKYSAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDV 159 (539)
T ss_pred ---ccchhhhhhcceeeeeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChhH
Confidence 157778888887778899999998887777764 3589999999883
No 277
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=88.43 E-value=3 Score=42.26 Aligned_cols=95 Identities=15% Similarity=0.109 Sum_probs=54.6
Q ss_pred CCcEEEEEccchhhH-HHHHHHHHhhhCCCcEEEEecCCCCc-ccC-CC-----------------CCCCCCHHHHhhcc
Q 048725 150 GKPGICIATSGPGAT-NLVSGLADALLDSVPLVAITGQVPRR-MIG-TD-----------------AFQETPIVEVTRSI 209 (661)
Q Consensus 150 g~~gv~~~tsGpG~~-N~l~gl~~A~~~~iPll~ItG~~p~~-~~g-~~-----------------~~q~~~~~~~~~~i 209 (661)
+|+.+|++-=| |+. -.+..+.++...++|+++|.-+.... +.+ +. .+...|...+.+.+
T Consensus 87 ~~~Vv~i~GDG-~~~~~g~~~l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~ 165 (237)
T cd02018 87 KKDVVVIGGDG-ATYDIGFGALSHSLFRGEDITVIVLDNEVYSNTGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATH 165 (237)
T ss_pred CCcEEEEeCch-HHHhccHHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHC
Confidence 46666654333 222 23566777778999999998655421 111 00 11234666666666
Q ss_pred cccccc---cCCcCcHHHHHHHHHHHhhcCCCceEEEEeccch
Q 048725 210 TKHNYL---VLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDI 249 (661)
Q Consensus 210 tk~~~~---v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~dv 249 (661)
--...+ +.+++++...+++|+. ...||+.|++..+.
T Consensus 166 G~~~~~~~~v~~~~~l~~al~~al~----~~~GP~lI~v~i~c 204 (237)
T cd02018 166 GCVYVARLSPALKKHFLKVVKEAIS----RTDGPTFIHAYTPC 204 (237)
T ss_pred CCCEEEEEccCCHHHHHHHHHHHHh----cCCCCEEEEEeCCC
Confidence 444433 6666666666665553 12589999998764
No 278
>PRK06163 hypothetical protein; Provisional
Probab=88.40 E-value=4.4 Score=40.01 Aligned_cols=105 Identities=21% Similarity=0.211 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHh-CCcEEEEEccchhh-HHHHHHHHHhhh-CCCcEEEEecCCCCc-ccCC---CCCCCCCHHHHhhcc
Q 048725 137 GGIFAAEGYARSS-GKPGICIATSGPGA-TNLVSGLADALL-DSVPLVAITGQVPRR-MIGT---DAFQETPIVEVTRSI 209 (661)
Q Consensus 137 ~A~~~A~Gyar~t-g~~gv~~~tsGpG~-~N~l~gl~~A~~-~~iPll~ItG~~p~~-~~g~---~~~q~~~~~~~~~~i 209 (661)
.+.-+|.|.+.+. +++.+|++ |=|. .-.+..|..+.. .++|+++|.-+.... +.+. ...+..|...+.+.+
T Consensus 61 ~glpaAiGaalA~p~r~Vv~i~--GDG~f~m~~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~~~~~~Df~~lA~a~ 138 (202)
T PRK06163 61 LAFPIALGVALAQPKRRVIALE--GDGSLLMQLGALGTIAALAPKNLTIIVMDNGVYQITGGQPTLTSQTVDVVAIARGA 138 (202)
T ss_pred cHHHHHHHHHHhCCCCeEEEEE--cchHHHHHHHHHHHHHHhcCCCeEEEEEcCCchhhcCCccCCCCCCCCHHHHHHHC
Confidence 3556788888776 45666654 4443 334567777754 478999888655322 1111 112335666666666
Q ss_pred ccc-ccccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 210 TKH-NYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 210 tk~-~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
--. .+++.+.+++...+++|+. ..||+.|++..|
T Consensus 139 G~~~~~~v~~~~el~~al~~a~~-----~~~p~lIeV~i~ 173 (202)
T PRK06163 139 GLENSHWAADEAHFEALVDQALS-----GPGPSFIAVRID 173 (202)
T ss_pred CCceEEEeCCHHHHHHHHHHHHh-----CCCCEEEEEEec
Confidence 443 4578888888888887764 258999999865
No 279
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=88.38 E-value=1.2 Score=46.16 Aligned_cols=71 Identities=28% Similarity=0.328 Sum_probs=50.1
Q ss_pred HHHHhhhcCCEEEEeCCCCCCCcCCccccc--CCCCeEEEEcCCchhhccCCCCcceEeccHHHHHHHHHHHhcC
Q 048725 347 YANYAVDKSDLLLAFGVRFDDRVTGKLEAF--ASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGG 419 (661)
Q Consensus 347 ~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~--~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~ 419 (661)
.+.+.+++||++|++|+++.-.....+... ..++++|.|+.++..+.. ...++.+.+++...+. +...+.+
T Consensus 192 ~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~t~~~~-~~~d~~i~~~~~~~~~-~~~~~~~ 264 (271)
T PTZ00409 192 QAEKEIDKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNISKTYITN-RISDYHVRAKFSELAQ-ISDILKG 264 (271)
T ss_pred HHHHHHHcCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCCCCCCCC-ccccEEEECcHHHHHH-HHHHhcc
Confidence 445678899999999999865544433322 346789999999876542 3357889999999885 4455554
No 280
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=88.31 E-value=3.1 Score=45.23 Aligned_cols=114 Identities=18% Similarity=0.176 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHhCC--CcEEEEcCCcc-chHHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCCcHHHHHh
Q 048725 275 PSEVHLEQIVRLISESK--KPVLYVGGGCL-NSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYA 351 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~Ak--rPvIv~G~g~~-~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g~~~a~~~ 351 (661)
..+++++.+++.|++.+ +..++.|+... .....+.+|++.+|.+-+..............+ .|. +..+.. .+-
T Consensus 70 sWdeAl~~ia~~l~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~--~~d 145 (386)
T cd02768 70 SWEEALKTVAEGLKAVKGDKIGGIAGPRADLESLFLLKKLLNKLGSNNIDHRLRQSDLPADNRL-RGN-YLFNTS--IAE 145 (386)
T ss_pred CHHHHHHHHHHHHHhcChhheEEEecCCCCHHHHHHHHHHHHHhCCCCchhhhccccCcccccc-ccC-cccCCC--HHH
Confidence 46888999999998876 55666665443 344568899999998765432111100000000 011 111111 223
Q ss_pred hhcCCEEEEeCCCCCCCcCC---cc-cccCC-CCeEEEEcCCchhh
Q 048725 352 VDKSDLLLAFGVRFDDRVTG---KL-EAFAS-RAKIVHIDIDSAEI 392 (661)
Q Consensus 352 l~~aDlvL~vG~~~~~~~t~---~~-~~~~~-~~~vi~Id~d~~~i 392 (661)
++++|+||.+|..+.+.... .+ ..... ++++|.||......
T Consensus 146 i~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~g~kli~idp~~t~~ 191 (386)
T cd02768 146 IEEADAVLLIGSNLRKEAPLLNARLRKAVKKKGAKIAVIGPKDTDL 191 (386)
T ss_pred HhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCeEEEECCCcccc
Confidence 67999999999987433211 11 11223 67999999877654
No 281
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=88.20 E-value=1.8 Score=45.56 Aligned_cols=99 Identities=28% Similarity=0.373 Sum_probs=61.6
Q ss_pred HHHHH---hCCcEEEEEccchhhHH---HHHHHHHhhhCCCcEEEEecCCCCcccCC-----CCCCCCCHHHHhhccccc
Q 048725 144 GYARS---SGKPGICIATSGPGATN---LVSGLADALLDSVPLVAITGQVPRRMIGT-----DAFQETPIVEVTRSITKH 212 (661)
Q Consensus 144 Gyar~---tg~~gv~~~tsGpG~~N---~l~gl~~A~~~~iPll~ItG~~p~~~~g~-----~~~q~~~~~~~~~~itk~ 212 (661)
|+|++ .|+..|+++..|=|+++ ..-++--|...+.|||+|+-+.... +.+ ..... ..+..+.+--.
T Consensus 112 G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~~a-ist~~~~~~~~~~--~~~~a~~~gip 188 (300)
T PF00676_consen 112 GVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQYA-ISTPTEEQTASPD--IADRAKGYGIP 188 (300)
T ss_dssp HHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEESEE-TTEEHHHHCSSST--SGGGGGGTTSE
T ss_pred chhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCCcc-cccCccccccccc--hhhhhhccCCc
Confidence 55554 47788888888877655 4567777889999999998643211 110 00111 11222222222
Q ss_pred cc--ccCCcCcHHHHHHHHHHHhhcCCCceEEEEec
Q 048725 213 NY--LVLDVDDIPRIVREAFLLATSGRPGPVLIDVP 246 (661)
Q Consensus 213 ~~--~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP 246 (661)
.+ .=.|+..+.+.+++|++.++.++ ||+.|++=
T Consensus 189 ~~~VDG~D~~av~~a~~~A~~~~R~g~-gP~lie~~ 223 (300)
T PF00676_consen 189 GIRVDGNDVEAVYEAAKEAVEYARAGK-GPVLIEAV 223 (300)
T ss_dssp EEEEETTSHHHHHHHHHHHHHHHHTTT---EEEEEE
T ss_pred EEEECCEeHHHHHHHHHHHHHHHhcCC-CCEEEEEe
Confidence 22 23477889999999999999987 99999984
No 282
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=88.03 E-value=2.4 Score=48.85 Aligned_cols=117 Identities=14% Similarity=0.073 Sum_probs=76.2
Q ss_pred CeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEEC-CcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhc
Q 048725 493 RQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDG-DGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYK 571 (661)
Q Consensus 493 ~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~G-DGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~ 571 (661)
.+++....- ..+.-+|-|.+... +++.+|++. --++...++.+.+|...+.|+++|.-.-..... +
T Consensus 39 i~~v~~rhE---~~A~~~Adgyar~t-gk~gv~~~t~GPG~~n~~~~i~~A~~~~~Pvl~I~G~~~~~~~---------~ 105 (575)
T TIGR02720 39 IHYIQVRHE---EVGALAAAADAKLT-GKIGVCFGSAGPGATHLLNGLYDAKEDHVPVLALVGQVPTTGM---------N 105 (575)
T ss_pred CcEEEeccH---HHHHHHHHHHHHhh-CCceEEEeCCCCcHHHHHHHHHHHhhcCCCEEEEecCCccccC---------C
Confidence 455554432 22556677777665 456565554 345555689999999999999999865432211 0
Q ss_pred ccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHH----HHhCCCcEEEEEEeCC
Q 048725 572 ANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQT----MLDTPGPYLLDVIFPH 634 (661)
Q Consensus 572 ~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~----a~~~~gp~lIeV~~~~ 634 (661)
. ..+. .+|...+++.+-....+|.+++++...+++ |....||+.|++..|-
T Consensus 106 ~----~~~q--------~id~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv 160 (575)
T TIGR02720 106 M----DTFQ--------EMNENPIYADVAVYNRTAMTAESLPHVIDEAIRRAYAHNGVAVVTIPVDF 160 (575)
T ss_pred C----CCcc--------eechhhhhhhcceEEEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEECcch
Confidence 0 0011 157777888887777888887777555555 4456799999999874
No 283
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=88.03 E-value=3.9 Score=41.36 Aligned_cols=94 Identities=15% Similarity=0.097 Sum_probs=56.3
Q ss_pred CCcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEecCCCCcc-c-CCCC----------------------CCCCCHHHH
Q 048725 150 GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRM-I-GTDA----------------------FQETPIVEV 205 (661)
Q Consensus 150 g~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~~-~-g~~~----------------------~q~~~~~~~ 205 (661)
.|+.||++-=|--..-.+..|..|...++|+++|.-+..... . ++.. ....|...+
T Consensus 80 ~r~VV~i~GDG~~~~m~~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~i 159 (235)
T cd03376 80 DITVVAFAGDGGTADIGFQALSGAAERGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPLI 159 (235)
T ss_pred CCeEEEEEcCchHHhhHHHHHHHHHHcCCCeEEEEECCcccccCCCCCCCCCCCCCEeecCCCCccccccccccCCHHHH
Confidence 567777653333112446889999999999999986543211 0 0000 011355556
Q ss_pred hhccc-cc--ccccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 206 TRSIT-KH--NYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 206 ~~~it-k~--~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
.+.+- ++ ..++.+++++.+.+++|+.. .||+.|++..+
T Consensus 160 A~a~G~~~~~~~~v~~~~el~~al~~a~~~-----~gP~lIev~~~ 200 (235)
T cd03376 160 MAAHNIPYVATASVAYPEDLYKKVKKALSI-----EGPAYIHILSP 200 (235)
T ss_pred HHHcCCcEEEEEcCCCHHHHHHHHHHHHhC-----CCCEEEEEECC
Confidence 65552 22 13577777777777777652 58999999654
No 284
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=87.89 E-value=7.2 Score=45.24 Aligned_cols=156 Identities=14% Similarity=0.117 Sum_probs=91.9
Q ss_pred CCcHHHHHHHHHHH-CCCCEEEec-cCCCcHHHHHHHHcCCCCeEEccCChhH---HHHHHHHHHHHh-CCcEEEEEccc
Q 048725 87 PRKGADILVEALER-QGVTDVFAY-PGGASMEIHQALTRSNNIRNVLPRHEQG---GIFAAEGYARSS-GKPGICIATSG 160 (661)
Q Consensus 87 ~~~gad~lv~~L~~-~GV~~vFg~-PG~~~~~l~~aL~~~~~i~~v~~~hE~~---A~~~A~Gyar~t-g~~gv~~~tsG 160 (661)
+++-. .+++.|.+ ..=+.++.. .|+...-....+.-...-+++.+..-.+ +.-+|.|.+.+. +|+.+|++-=|
T Consensus 365 ~l~p~-~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~s~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG 443 (597)
T PRK08273 365 PVNPQ-RVFWELSPRLPDNAILTADSGSCANWYARDLRMRRGMMASLSGTLATMGPAVPYAIAAKFAHPDRPVIALVGDG 443 (597)
T ss_pred CcCHH-HHHHHHHhhCCCCeEEEECCcHHHHHHHHhCCCCCCCeEEecCccccccchHHHHHHHHHhCCCCcEEEEEcch
Confidence 44443 35555544 232344433 3444333444443222345554433222 334788888876 67788776444
Q ss_pred hhhHHHHHHHHHhhhC-----CCcEEEEecCCCCc-c--------cCCC------CCCCCCHHHHhhcccccccccCCcC
Q 048725 161 PGATNLVSGLADALLD-----SVPLVAITGQVPRR-M--------IGTD------AFQETPIVEVTRSITKHNYLVLDVD 220 (661)
Q Consensus 161 pG~~N~l~gl~~A~~~-----~iPll~ItG~~p~~-~--------~g~~------~~q~~~~~~~~~~itk~~~~v~~~~ 220 (661)
-=..|.+.-|..|... ++|+++|.-..... + .+.. .+...|...+.+.+--...++.+.+
T Consensus 444 ~f~m~~~~EL~Ta~r~~~~~~~lpviivV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~ 523 (597)
T PRK08273 444 AMQMNGMAELITVAKYWRQWSDPRLIVLVLNNRDLNQVTWEQRVMEGDPKFEASQDLPDVPYARFAELLGLKGIRVDDPE 523 (597)
T ss_pred hHhccchHHHHHHHHHhhcccCCCEEEEEEeCCcchHHHHHHHHhcCCCcccccccCCCCCHHHHHHHCCCEEEEECCHH
Confidence 3333434578888877 89999988655421 0 0111 1134566777777766677888988
Q ss_pred cHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 221 DIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 221 ~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
++...+++|+.. .||+.|++..|
T Consensus 524 eL~~al~~a~~~-----~~p~lIeV~~~ 546 (597)
T PRK08273 524 QLGAAWDEALAA-----DRPVVLEVKTD 546 (597)
T ss_pred HHHHHHHHHHhC-----CCCEEEEEEeC
Confidence 888888888742 58999999876
No 285
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=87.79 E-value=1.8 Score=48.11 Aligned_cols=117 Identities=11% Similarity=0.019 Sum_probs=74.0
Q ss_pred CeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEEC-CcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhc
Q 048725 493 RQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDG-DGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYK 571 (661)
Q Consensus 493 ~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~G-DGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~ 571 (661)
.+++....-.+ +.-+|-|.+.+. +++.+|++- -.+..-.+..|.+|...+.|+++|.-.-.... .+
T Consensus 39 i~~v~~~hE~~---A~~mAdgyar~t-g~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~g~~~~~~---------~~ 105 (432)
T TIGR00173 39 LRVHVHIDERS---AGFFALGLAKAS-GRPVAVVCTSGTAVANLLPAVIEASYSGVPLIVLTADRPPEL---------RG 105 (432)
T ss_pred cEEEEecCCcc---HHHHHHHHHhcc-CCCEEEEECCcchHhhhhHHHHHhcccCCcEEEEeCCCCHHH---------hC
Confidence 45655544322 455777777765 455555554 34555568999999999999999876543210 01
Q ss_pred ccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHH------H----HHHHHHHHh-CCCcEEEEEEeCC
Q 048725 572 ANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKAD------L----RAAIQTMLD-TPGPYLLDVIFPH 634 (661)
Q Consensus 572 ~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~e------l----~~al~~a~~-~~gp~lIeV~~~~ 634 (661)
.. ..+ ..|...+.+.+-....+|.++++ + ++|++.+.. .+||+.|+|..|-
T Consensus 106 ~~-------~~q-----~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (432)
T TIGR00173 106 CG-------ANQ-----TIDQPGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFRE 167 (432)
T ss_pred CC-------CCc-----ccchhhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCCC
Confidence 11 101 15777778877777778877665 4 455555554 4599999999774
No 286
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=87.76 E-value=1.8 Score=47.73 Aligned_cols=94 Identities=23% Similarity=0.265 Sum_probs=57.6
Q ss_pred cEEEEEccchhhHHH---HHHHHHhhhCCCcEEEEecCCCCcccCCC-CCC--CCCHHHHhhcccccccccC--CcCcHH
Q 048725 152 PGICIATSGPGATNL---VSGLADALLDSVPLVAITGQVPRRMIGTD-AFQ--ETPIVEVTRSITKHNYLVL--DVDDIP 223 (661)
Q Consensus 152 ~gv~~~tsGpG~~N~---l~gl~~A~~~~iPll~ItG~~p~~~~g~~-~~q--~~~~~~~~~~itk~~~~v~--~~~~i~ 223 (661)
..++++..|=|.+|- .-++.-|..-++|+|++.-+... .++.- ..| ..+.....+.+--...+|+ ++..+.
T Consensus 223 ~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfVV~NN~y-aig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~~av~ 301 (433)
T PLN02374 223 DDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVR 301 (433)
T ss_pred CCEEEEEECCCccccChHHHHHHHHHHhCCCEEEEEeCCCE-eecceeeeccCCCCHHHHHHhcCCcEEEECCCCHHHHH
Confidence 345566778777663 33677788999999999864421 12211 111 1233444444433334454 344567
Q ss_pred HHHHHHHHHhhcCCCceEEEEecc
Q 048725 224 RIVREAFLLATSGRPGPVLIDVPK 247 (661)
Q Consensus 224 ~~i~~A~~~a~s~~~GPV~I~iP~ 247 (661)
+.+.+|++.|+.+. ||+.|++-.
T Consensus 302 ~a~~~A~~~Ar~g~-gP~LIe~~t 324 (433)
T PLN02374 302 EVAKEAIERARRGE-GPTLVECET 324 (433)
T ss_pred HHHHHHHHHHHHcC-CCEEEEEEE
Confidence 77889999999875 899999743
No 287
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=87.65 E-value=2.6 Score=48.14 Aligned_cols=107 Identities=15% Similarity=0.100 Sum_probs=71.3
Q ss_pred hHHHHHHhhhhCCCCcEEEEE-CCcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCc
Q 048725 507 GLPAAIGAAVANPDAIIVDID-GDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRE 585 (661)
Q Consensus 507 ~lpaAiGaala~p~~~vv~i~-GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~ 585 (661)
+.-+|.|.+.+. +++.||++ .--++...++.|.+|...+.|+++|.-.-. +... +. .....
T Consensus 60 A~~~Adgyar~t-g~~~v~~vt~gpG~~N~~~gia~A~~~~~Pvl~i~g~~~-~~~~--------~~---~~~~~----- 121 (530)
T PRK07092 60 VVGMADGYAQAT-GNAAFVNLHSAAGVGNAMGNLFTAFKNHTPLVITAGQQA-RSIL--------PF---EPFLA----- 121 (530)
T ss_pred HHHHHHHHHHHh-CCceEEEeccCchHHHHHHHHHHHhhcCCCEEEEecCCc-cccc--------Cc---cchhc-----
Confidence 556888888876 46666655 333444568999999999999998775322 1110 00 00001
Q ss_pred ccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 586 SEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 586 ~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
.+|...+.+.+--...++++++++.+.+++|+. ..||+.|++..|-
T Consensus 122 ---~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d~ 172 (530)
T PRK07092 122 ---AVQAAELPKPYVKWSIEPARAEDVPAAIARAYHIAMQPPRGPVFVSIPYDD 172 (530)
T ss_pred ---ccCHHHhhcccccceeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEccHHH
Confidence 146667777776677789999998888887775 3589999999774
No 288
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=87.52 E-value=3.3 Score=44.39 Aligned_cols=93 Identities=23% Similarity=0.273 Sum_probs=58.3
Q ss_pred EEEEEccchhhHHH---HHHHHHhhhCCCcEEEEecCCCCcccCCC---CCCCCCHHHHhhcccccccccCCcC--cHHH
Q 048725 153 GICIATSGPGATNL---VSGLADALLDSVPLVAITGQVPRRMIGTD---AFQETPIVEVTRSITKHNYLVLDVD--DIPR 224 (661)
Q Consensus 153 gv~~~tsGpG~~N~---l~gl~~A~~~~iPll~ItG~~p~~~~g~~---~~q~~~~~~~~~~itk~~~~v~~~~--~i~~ 224 (661)
.++++..|=|.++- .-++..|..-++|+|+|.-+.... ++.. .....|.....+.+--...+|+..+ .+..
T Consensus 158 ~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvifvv~NN~~~-i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~ 236 (341)
T CHL00149 158 RVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWA-IGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVRE 236 (341)
T ss_pred CEEEEEeCCchhhhcHHHHHHHHHhhcCCCEEEEEEeCCee-eecchhheeCCccHHHHHHhCCCCEEEEeCCCHHHHHH
Confidence 45556678777772 235677888899999998654311 1111 1112344555555544455565444 4567
Q ss_pred HHHHHHHHhhcCCCceEEEEecc
Q 048725 225 IVREAFLLATSGRPGPVLIDVPK 247 (661)
Q Consensus 225 ~i~~A~~~a~s~~~GPV~I~iP~ 247 (661)
.+++|++.++.+. ||+.|++-.
T Consensus 237 a~~~A~~~ar~~~-gP~lIev~t 258 (341)
T CHL00149 237 VAKEAVERARQGD-GPTLIEALT 258 (341)
T ss_pred HHHHHHHHHHhCC-CCEEEEEEE
Confidence 7889999998775 899999854
No 289
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=87.45 E-value=2.8 Score=44.18 Aligned_cols=77 Identities=17% Similarity=0.255 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHH---HhCCCeeecCCCCCCCCCCCCCCCcccCCCC---------
Q 048725 279 HLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVE---LTGIPVASTLMGLGSFPGTDELSLQMLGMHG--------- 344 (661)
Q Consensus 279 ~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae---~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g--------- 344 (661)
.-++++.+|.+|+..+|+-|+|-. .+...++|++| +-|++|=- .-||..-.+.|+..
T Consensus 297 saedaA~~l~nA~sVIIvPGYGmAVAQAQh~v~E~~~~L~~~Gv~Vrf---------aIHPVAGRmPGHMNVLLAEA~Vp 367 (463)
T COG1282 297 SAEDAAELLKNASSVIIVPGYGMAVAQAQHPVAEITEKLRARGVNVRF---------AIHPVAGRMPGHMNVLLAEAKVP 367 (463)
T ss_pred CHHHHHHHHhCCCeEEEecCchHHHHhhhhHHHHHHHHHHhcCCeeeE---------eecccccCCCcchhhhhhhccCC
Confidence 345788899999999999999864 45555555554 55666621 12554333334321
Q ss_pred ------cHHHHHhhhcCCEEEEeCCC
Q 048725 345 ------TVYANYAVDKSDLLLAFGVR 364 (661)
Q Consensus 345 ------~~~a~~~l~~aDlvL~vG~~ 364 (661)
-+..|+-+.++|++|++|..
T Consensus 368 Yd~v~emddIN~dF~~tDVvlVIGAN 393 (463)
T COG1282 368 YDIVLEMDEINDDFADTDVVLVIGAN 393 (463)
T ss_pred HHHHhhHHhhcchhccccEEEEEccC
Confidence 11234456789999999965
No 290
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=87.44 E-value=2.3 Score=44.62 Aligned_cols=107 Identities=26% Similarity=0.235 Sum_probs=65.0
Q ss_pred HHHHHHHHHh---CCcEEEEEccchhhHHH---HHHHHHhhhCCCcEEEEecCCCCcccCCCC---CCCCCHHHHhhccc
Q 048725 140 FAAEGYARSS---GKPGICIATSGPGATNL---VSGLADALLDSVPLVAITGQVPRRMIGTDA---FQETPIVEVTRSIT 210 (661)
Q Consensus 140 ~~A~Gyar~t---g~~gv~~~tsGpG~~N~---l~gl~~A~~~~iPll~ItG~~p~~~~g~~~---~q~~~~~~~~~~it 210 (661)
-+|.|.+.+. +.-.++++..|=|.++. .-++..|...++|+|+|.-+.... +.... ....+...+.+.+-
T Consensus 111 p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~~-i~~~~~~~~~~~~~~~~a~a~G 189 (293)
T cd02000 111 PLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYA-ISTPTSRQTAGTSIADRAAAYG 189 (293)
T ss_pred hHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCee-ccCCHHHHhCCccHHHHHHhCC
Confidence 4455555553 23345555667777653 356888999999999998654311 11110 11223444555443
Q ss_pred ccccccC--CcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 211 KHNYLVL--DVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 211 k~~~~v~--~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
-....|. +++++...+++|++.+..+. ||+.|++-.+
T Consensus 190 ~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~-~P~lIev~~~ 228 (293)
T cd02000 190 IPGIRVDGNDVLAVYEAAKEAVERARAGG-GPTLIEAVTY 228 (293)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHHHccC-CCEEEEEEEe
Confidence 3344554 45578888899998888764 8999999655
No 291
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=87.19 E-value=11 Score=45.48 Aligned_cols=119 Identities=13% Similarity=-0.006 Sum_probs=64.2
Q ss_pred EEccCChhHHHH--HHHHHHHHh-CCc-EEEEEccchh-hHHHHHHHHHhhhCCCc-EEEEecCCCCcccCCC--CCCCC
Q 048725 129 NVLPRHEQGGIF--AAEGYARSS-GKP-GICIATSGPG-ATNLVSGLADALLDSVP-LVAITGQVPRRMIGTD--AFQET 200 (661)
Q Consensus 129 ~v~~~hE~~A~~--~A~Gyar~t-g~~-gv~~~tsGpG-~~N~l~gl~~A~~~~iP-ll~ItG~~p~~~~g~~--~~q~~ 200 (661)
+-.-..|+++.. +|.|-+.++ |.+ -.+..|..+= +.=+.--+-.+-..+.. +++++ .......+.+ .+|.+
T Consensus 576 ie~GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~tfs~F~~~R~~Dqir~a~~~~~~~vlig~-T~gg~tlg~dG~THQ~~ 654 (896)
T PRK13012 576 LEEGITEAGAISSWIAAATSYSVHGLPMLPFYIYYSMFGFQRVGDLIWAAADQRARGFLLGA-TAGRTTLGGEGLQHQDG 654 (896)
T ss_pred EecchhhhhhhHHHHHHHhhHHhcCCCcEEEEEehHHHHHHHHHHHHHHHHhcccCCeEEEE-eCcccccCCCCCCCcch
Confidence 344489999944 555544443 332 2223454532 22222223222222333 44443 3322222322 36777
Q ss_pred CHHHHhhccccc-ccccCCcCcHHHHHHHHHHHhh-cCCCceEEEEeccc
Q 048725 201 PIVEVTRSITKH-NYLVLDVDDIPRIVREAFLLAT-SGRPGPVLIDVPKD 248 (661)
Q Consensus 201 ~~~~~~~~itk~-~~~v~~~~~i~~~i~~A~~~a~-s~~~GPV~I~iP~d 248 (661)
....+++.+... .+.+.+..++..+++.+++.+. ....+|+||.+...
T Consensus 655 eslal~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~YIrL~r~ 704 (896)
T PRK13012 655 HSHLLASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYYLTVMNE 704 (896)
T ss_pred HhHHHHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEEEEecCC
Confidence 777888887553 3456677788888888886642 33458999999754
No 292
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=87.09 E-value=2.6 Score=48.78 Aligned_cols=106 Identities=16% Similarity=0.150 Sum_probs=73.7
Q ss_pred hHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCc
Q 048725 507 GLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRE 585 (661)
Q Consensus 507 ~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~ 585 (661)
+.-+|-|.+... +++.+|++-=| ++...++.|..|...+.|+++|.-.=..+.+ +.. .+.
T Consensus 63 A~~~Adgyar~t-g~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~---------~~~----~~q----- 123 (585)
T CHL00099 63 AAHAADGYARST-GKVGVCFATSGPGATNLVTGIATAQMDSVPLLVITGQVGRAFI---------GTD----AFQ----- 123 (585)
T ss_pred HHHHHHHHHHhc-CCcEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCcccc---------CCC----Ccc-----
Confidence 566778877776 56666666433 4444689999999999999998864332111 000 011
Q ss_pred ccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 586 SEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 586 ~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
..|...+++.+--+..+|.+++++.+.+++|+. .+||+.|++..|-
T Consensus 124 ---~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv 174 (585)
T CHL00099 124 ---EVDIFGITLPIVKHSYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKDV 174 (585)
T ss_pred ---ccchhhhhcCceeEEEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChhh
Confidence 146677777777677899999999888888774 3589999998874
No 293
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=86.69 E-value=2.4 Score=44.89 Aligned_cols=107 Identities=23% Similarity=0.266 Sum_probs=64.0
Q ss_pred HHHHHHHHHh---CCcEEEEEccchhhHH---HHHHHHHhhhCCCcEEEEecCCCCcccCCC---CCCCCCHHHHhhccc
Q 048725 140 FAAEGYARSS---GKPGICIATSGPGATN---LVSGLADALLDSVPLVAITGQVPRRMIGTD---AFQETPIVEVTRSIT 210 (661)
Q Consensus 140 ~~A~Gyar~t---g~~gv~~~tsGpG~~N---~l~gl~~A~~~~iPll~ItG~~p~~~~g~~---~~q~~~~~~~~~~it 210 (661)
-.|.|.+.+. |...++++..|=|.++ ..-++.-|...++|+|+|.-+.... +.+. .....+...+.+.+-
T Consensus 117 p~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~yg-~s~~~~~~~~~~~~a~~A~a~G 195 (315)
T TIGR03182 117 PLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYA-MGTSVERSSSVTDLYKRGESFG 195 (315)
T ss_pred cHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCCcc-ccCCHHHHhCCcCHHHHHHhCC
Confidence 3455555554 2334555566777665 2244666778899999998664211 1110 011223444455444
Q ss_pred ccccccCC--cCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 211 KHNYLVLD--VDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 211 k~~~~v~~--~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
-...+|+. +.++.+.+++|++.++.+. ||+.|++-..
T Consensus 196 ~~~~~Vdg~d~~av~~a~~~A~~~ar~~~-gP~lIe~~t~ 234 (315)
T TIGR03182 196 IPGERVDGMDVLAVREAAKEAVERARSGK-GPILLEMKTY 234 (315)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHHHccC-CCEEEEEeCC
Confidence 44455553 5567888899999888765 8999999654
No 294
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=86.37 E-value=15 Score=42.29 Aligned_cols=155 Identities=14% Similarity=0.199 Sum_probs=92.3
Q ss_pred CCcHHHHHHHHHHHC-CCCEEEecc-CCCcHHHHHHHHcCCCCeEEccCCh---hHHHHHHHHHHHHh-CCcEEEEEccc
Q 048725 87 PRKGADILVEALERQ-GVTDVFAYP-GGASMEIHQALTRSNNIRNVLPRHE---QGGIFAAEGYARSS-GKPGICIATSG 160 (661)
Q Consensus 87 ~~~gad~lv~~L~~~-GV~~vFg~P-G~~~~~l~~aL~~~~~i~~v~~~hE---~~A~~~A~Gyar~t-g~~gv~~~tsG 160 (661)
+++. ..+.+.|.+. .=+.++..- |+........+.....-+++....= ..+.-+|.|.+.+. +|+.+|++-=|
T Consensus 358 ~i~~-~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~~G~mG~~lpaAiGa~la~p~r~vv~i~GDG 436 (574)
T PRK09124 358 PIHP-QYLARQISEFAADDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAQAAHPGRQVVALSGDG 436 (574)
T ss_pred cCCH-HHHHHHHHhhcCCCcEEEEcCCHHHHHHHHhcccCCCCeEEecCCcccccchHHHHHHHHHhCCCCeEEEEecCc
Confidence 3444 3355555443 223444444 4332222222222222455543321 22667899988776 56777765434
Q ss_pred hhhHHHHHHHHHhhhCCCcEEEEecCCCCcc--------cCC---C-CCCCCCHHHHhhcccccccccCCcCcHHHHHHH
Q 048725 161 PGATNLVSGLADALLDSVPLVAITGQVPRRM--------IGT---D-AFQETPIVEVTRSITKHNYLVLDVDDIPRIVRE 228 (661)
Q Consensus 161 pG~~N~l~gl~~A~~~~iPll~ItG~~p~~~--------~g~---~-~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~ 228 (661)
|+.-.+..|..|...++|+++|.-+..... .+. + .++..|...+.+.+--..+++.+++++...+++
T Consensus 437 -sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~ 515 (574)
T PRK09124 437 -GFSMLMGDFLSLVQLKLPVKIVVFNNSVLGFVAMEMKAGGYLTDGTDLHNPDFAAIAEACGITGIRVEKASELDGALQR 515 (574)
T ss_pred -HHhccHHHHHHHHHhCCCeEEEEEeCCccccHHHHHHhcCCccccCcCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHH
Confidence 444446789999999999999886553110 010 0 123456677777776667789998888888887
Q ss_pred HHHHhhcCCCceEEEEeccc
Q 048725 229 AFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 229 A~~~a~s~~~GPV~I~iP~d 248 (661)
|+. ..||+.|++..|
T Consensus 516 a~~-----~~~p~lIev~i~ 530 (574)
T PRK09124 516 AFA-----HDGPALVDVVTA 530 (574)
T ss_pred HHh-----CCCCEEEEEEec
Confidence 764 258999999876
No 295
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=86.34 E-value=2.3 Score=44.31 Aligned_cols=143 Identities=16% Similarity=0.118 Sum_probs=77.1
Q ss_pred HHHHHHHHHHCCCC---E-EEeccCCCcHHHHHHHHcCCC-C--eEEccCChhHHHHHHHHHHHHh-CCcEEEEEccchh
Q 048725 91 ADILVEALERQGVT---D-VFAYPGGASMEIHQALTRSNN-I--RNVLPRHEQGGIFAAEGYARSS-GKPGICIATSGPG 162 (661)
Q Consensus 91 ad~lv~~L~~~GV~---~-vFg~PG~~~~~l~~aL~~~~~-i--~~v~~~hE~~A~~~A~Gyar~t-g~~gv~~~tsGpG 162 (661)
-.+|.++|.++|+. . +++=.|.+. +.+. + ......| ..|.-+|.|...+. .++.||++-=|-.
T Consensus 13 ~~~~~~a~~~l~~~p~d~iivsdiGc~~--------~~~~~l~~~~~~t~m-G~alPaAiGaklA~Pd~~VVai~GDG~f 83 (287)
T TIGR02177 13 LSALQRALAELNLDPEQVVVVSGIGCSA--------KTPHYVNVNGFHGLH-GRALPVATGIKLANPHLKVIVVGGDGDL 83 (287)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCccc--------ccCCeEecCCccccc-ccHHHHHHHHHHHCCCCcEEEEeCchHH
Confidence 35788888888873 2 222223221 1111 1 1122233 55778899988886 5666665533332
Q ss_pred hHHHHHHHHHhhhCCCcEEEEecCCCCc-----------ccCCC-------CC---CCCCHHHHhhcccccccc-cCCcC
Q 048725 163 ATNLVSGLADALLDSVPLVAITGQVPRR-----------MIGTD-------AF---QETPIVEVTRSITKHNYL-VLDVD 220 (661)
Q Consensus 163 ~~N~l~gl~~A~~~~iPll~ItG~~p~~-----------~~g~~-------~~---q~~~~~~~~~~itk~~~~-v~~~~ 220 (661)
..-.++.+..|...++||++|.-+.... ..|.. .. .+.+...+...+...... +.+++
T Consensus 84 ~~mg~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~~~~~ 163 (287)
T TIGR02177 84 YGIGGNHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVARGFSGDVA 163 (287)
T ss_pred HhccHHHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHHHhCCCCeEEEEecCCHH
Confidence 2244677999999999999997433211 01100 00 011223344343222222 35667
Q ss_pred cHHHHHHHHHHHhhcCCCceEEEEecc
Q 048725 221 DIPRIVREAFLLATSGRPGPVLIDVPK 247 (661)
Q Consensus 221 ~i~~~i~~A~~~a~s~~~GPV~I~iP~ 247 (661)
++.+.+++|++ . +||++|++..
T Consensus 164 eL~~ai~~Al~----~-~GpslIeV~~ 185 (287)
T TIGR02177 164 HLKEIIKEAIN----H-KGYALVDILQ 185 (287)
T ss_pred HHHHHHHHHHh----C-CCCEEEEEeC
Confidence 77666666654 2 5899999864
No 296
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=85.54 E-value=3.7 Score=42.84 Aligned_cols=151 Identities=14% Similarity=0.101 Sum_probs=80.9
Q ss_pred cHHHHHHHHHHHCCCC--EEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHh-CCcEEEEEccchhhHH
Q 048725 89 KGADILVEALERQGVT--DVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS-GKPGICIATSGPGATN 165 (661)
Q Consensus 89 ~gad~lv~~L~~~GV~--~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~t-g~~gv~~~tsGpG~~N 165 (661)
..-.+|.+.|.++|++ ....+.|......+-.... ...+...| .-+.-+|.|.+.+. .++.+|++-=|-++.-
T Consensus 27 ~il~~l~~al~~l~~~p~d~vvvsdiGc~~~~~~~~~---~~~~~g~m-G~alpaAiGaklA~Pd~~VV~i~GDG~~f~m 102 (286)
T PRK11867 27 SILAALQRALAELGLDPENVAVVSGIGCSGRLPGYIN---TYGFHTIH-GRALAIATGLKLANPDLTVIVVTGDGDALAI 102 (286)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEeCCccccccCcccc---ccchhhhh-hcHHHHHHHHHHhCCCCcEEEEeCccHHHhC
Confidence 3567888888888864 2222222222211110100 11122233 44667888988876 4566665544444555
Q ss_pred HHHHHHHhhhCCCcEEEEecCCCCc-----------ccCC----CCCC----CCCHHHHhhccccccc---ccCCcCcHH
Q 048725 166 LVSGLADALLDSVPLVAITGQVPRR-----------MIGT----DAFQ----ETPIVEVTRSITKHNY---LVLDVDDIP 223 (661)
Q Consensus 166 ~l~gl~~A~~~~iPll~ItG~~p~~-----------~~g~----~~~q----~~~~~~~~~~itk~~~---~v~~~~~i~ 223 (661)
.++.+..|...++||++|.-+.... ..|. ..+. ..|...+...+--... .+.+++++.
T Consensus 103 g~~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~ 182 (286)
T PRK11867 103 GGNHFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLT 182 (286)
T ss_pred CHHHHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHH
Confidence 5788999999999999987533211 0010 0000 1344444444322111 244566666
Q ss_pred HHHHHHHHHhhcCCCceEEEEeccc
Q 048725 224 RIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 224 ~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
..+++|++ . +||++|++..+
T Consensus 183 ~al~~Al~----~-~Gp~lIev~~~ 202 (286)
T PRK11867 183 ELIKAAIN----H-KGFSFVEILQP 202 (286)
T ss_pred HHHHHHHh----C-CCCEEEEEeCC
Confidence 66666654 2 59999998654
No 297
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=85.44 E-value=5.2 Score=41.22 Aligned_cols=152 Identities=14% Similarity=0.087 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHCC---CCEEEeccCCCcHHHHHHHH-cCCCCeEE-ccCChhHHHHHHHHHHHHhCCcEEEEEccchhhH
Q 048725 90 GADILVEALERQG---VTDVFAYPGGASMEIHQALT-RSNNIRNV-LPRHEQGGIFAAEGYARSSGKPGICIATSGPGAT 164 (661)
Q Consensus 90 gad~lv~~L~~~G---V~~vFg~PG~~~~~l~~aL~-~~~~i~~v-~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~ 164 (661)
-.+.+.+.|.++| -+-|.-.-.....-=...+. +.|+ |++ .-.-||+.+.+|.|.|+...+|-+| |.++=++
T Consensus 9 ~R~~~g~~L~~l~~~~~diVvl~ADl~~St~~~~f~~~fPd-R~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~--tfa~F~s 85 (312)
T COG3958 9 LRKVYGETLAELGRKNSDIVVLDADLSSSTKTGYFAKEFPD-RFFNVGIAEQDMVGTAAGLALAGKKPFVS--TFAAFLS 85 (312)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecccccccchhHHHHhCch-hheecchHHHHHHHHHHHHHhcCCCceee--chHHHHH
Confidence 3455555555544 44444444332222222222 2332 233 3478999999999999988888776 6665444
Q ss_pred -HHHHHHHHh-hhCCCcEEEEecCCCCccc-CCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceE
Q 048725 165 -NLVSGLADA-LLDSVPLVAITGQVPRRMI-GTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPV 241 (661)
Q Consensus 165 -N~l~gl~~A-~~~~iPll~ItG~~p~~~~-g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV 241 (661)
-+.--|.++ .+++.+|=++.....-..- ....+|-+...+++|.+.+.... .|.|-. ..+..+..+..- .|||
T Consensus 86 ~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq~~EDiaimR~lpn~~V~--~P~D~v-~~~~i~~~~~~~-~GP~ 161 (312)
T COG3958 86 RRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQALEDIAIMRGLPNMTVI--APADAV-ETRAILDQIADY-KGPV 161 (312)
T ss_pred HHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccchhHHHHHHHhcCCCceEE--ccCcHH-HHHHHHHHHHhc-CCCE
Confidence 233333332 2566776666543332211 12457888888999998876543 233322 344444444433 4999
Q ss_pred EEEeccc
Q 048725 242 LIDVPKD 248 (661)
Q Consensus 242 ~I~iP~d 248 (661)
|+.+..+
T Consensus 162 Y~Rl~R~ 168 (312)
T COG3958 162 YMRLGRG 168 (312)
T ss_pred EEEecCC
Confidence 9999984
No 298
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=85.28 E-value=8.2 Score=43.14 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=64.5
Q ss_pred CCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccC-hHHH-HHHH--------HcCCCeEEEEEeCCcchh
Q 048725 492 PRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMN-VQEL-ATIK--------VEKLPIKILLLNNQHLGM 561 (661)
Q Consensus 492 p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~-~~eL-~ta~--------~~~lpv~ivV~NN~g~g~ 561 (661)
|.+++..+- +=...++.|.|+|++. -+++|.+.. ..|.+- +.-| ..++ +.++|++++.. |+++..
T Consensus 188 p~R~id~gI--aEq~~vg~AaGlA~~G-~rPiv~~~~-~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~-~G~~~~ 262 (464)
T PRK11892 188 ARRVIDTPI--TEHGFAGIGVGAAFAG-LKPIVEFMT-FNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGP-NGAAAR 262 (464)
T ss_pred ccceeecCc--cHHHHHHHHHHHHhCC-CEEEEEEeh-HHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEec-CCCCCC
Confidence 667775321 1112578888888852 455554432 112221 2223 2334 67899888744 444321
Q ss_pred HHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHc-CCCEeeeCCHHHHHHHHHHHHhCCCcEEE
Q 048725 562 VMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEAC-GIPGAQVTRKADLRAAIQTMLDTPGPYLL 628 (661)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lI 628 (661)
.|. +. ..++..+-..+ |+..+...+..|++..|+.+++.++|++|
T Consensus 263 -----------------~G~-hh----s~~d~a~~~~iPgl~V~~P~d~~d~~~ll~~ai~~~~Pv~i 308 (464)
T PRK11892 263 -----------------VAA-QH----SQDYAAWYSHIPGLKVVAPYSAADAKGLLKAAIRDPNPVIF 308 (464)
T ss_pred -----------------CCC-cc----ccCHHHHHhhCCCCEEEEeCCHHHHHHHHHHHhhCCCcEEE
Confidence 111 11 03444555555 77788889999999999999998899886
No 299
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=84.74 E-value=6.2 Score=38.41 Aligned_cols=105 Identities=19% Similarity=0.252 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCC-cEEEEecCCCCc-ccCC--CCCCCCCHHHHhhccc-c
Q 048725 138 GIFAAEGYARSS-GKPGICIATSGPGATNLVSGLADALLDSV-PLVAITGQVPRR-MIGT--DAFQETPIVEVTRSIT-K 211 (661)
Q Consensus 138 A~~~A~Gyar~t-g~~gv~~~tsGpG~~N~l~gl~~A~~~~i-Pll~ItG~~p~~-~~g~--~~~q~~~~~~~~~~it-k 211 (661)
+.-+|.|.+.+. +++.+|++-=| ++.-.+..|..+...+. |+++|.-+.... +.+. ......|...+.+.+- +
T Consensus 53 ~lpaAiGaala~p~~~Vv~i~GDG-~f~m~~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~~~~~~~~d~~~~A~a~G~~ 131 (188)
T cd03371 53 ASQIALGIALARPDRKVVCIDGDG-AALMHMGGLATIGGLAPANLIHIVLNNGAHDSVGGQPTVSFDVSLPAIAKACGYR 131 (188)
T ss_pred HHHHHHHHHHhCCCCcEEEEeCCc-HHHhhccHHHHHHHcCCCCcEEEEEeCchhhccCCcCCCCCCCCHHHHHHHcCCc
Confidence 556788887765 56777765333 23233567888777776 677777544321 1111 0112356666666653 3
Q ss_pred cccccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 212 HNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 212 ~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
+..++.+++++.+.+++|++ . .+|+.|++..|
T Consensus 132 ~~~~v~~~~el~~al~~a~~----~-~~p~lIev~~~ 163 (188)
T cd03371 132 AVYEVPSLEELVAALAKALA----A-DGPAFIEVKVR 163 (188)
T ss_pred eEEecCCHHHHHHHHHHHHh----C-CCCEEEEEEec
Confidence 33467777777777666653 2 48999999765
No 300
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=84.74 E-value=4.1 Score=46.55 Aligned_cols=88 Identities=23% Similarity=0.265 Sum_probs=58.1
Q ss_pred CcccchHHHHHHhhh-----------hCCCCcEEEEECCccccc--ChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHH
Q 048725 502 GAMGFGLPAAIGAAV-----------ANPDAIIVDIDGDGSFIM--NVQELATIKVEKLPIKILLLNNQHLGMVMQWEDR 568 (661)
Q Consensus 502 g~mG~~lpaAiGaal-----------a~p~~~vv~i~GDGsf~~--~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~ 568 (661)
++||-|.-.||=.+. ..++++|+|+.|||-+=- +...|..|.+++|.-+++|+|=+- | +
T Consensus 192 vSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNl-------Q-r 263 (887)
T COG2609 192 VSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNL-------Q-R 263 (887)
T ss_pred ccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEecCcccCCchhhHHHHHHHHhcCCceEEEEecch-------h-h
Confidence 588888766665443 135789999999998654 467788999999998888888552 1 1
Q ss_pred hhcccccccccCCCCCcccCCccHHHHHhHcCCCEeee
Q 048725 569 FYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQV 606 (661)
Q Consensus 569 ~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v 606 (661)
. .. ...|| ..+.-.++.+-++.|+..+.|
T Consensus 264 L-Dg----pVrgn----gkiiqelE~~FrgAGW~Vikv 292 (887)
T COG2609 264 L-DG----PVRGN----GKIIQELEGIFRGAGWNVIKV 292 (887)
T ss_pred c-CC----cccCC----chhHHHHHHHhccCCceEEEE
Confidence 0 10 00111 111236777888888877766
No 301
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=84.65 E-value=4.6 Score=38.83 Aligned_cols=114 Identities=14% Similarity=0.213 Sum_probs=64.3
Q ss_pred CCeEEecCCCCcccc-hHHHHHHhhhhCC-CCcEEEEECCccccc-----ChHHHH-HHHHcCCCeEEEEEeCCcchhHH
Q 048725 492 PRQWLTSGGLGAMGF-GLPAAIGAAVANP-DAIIVDIDGDGSFIM-----NVQELA-TIKVEKLPIKILLLNNQHLGMVM 563 (661)
Q Consensus 492 p~~~~~~~~~g~mG~-~lpaAiGaala~p-~~~vv~i~GDGsf~~-----~~~eL~-ta~~~~lpv~ivV~NN~g~g~~~ 563 (661)
+.+++..+- .=. .++.|.|++++.+ ..+++.-. +.|+. ....+. .....++|+. |+..-+ ++.-
T Consensus 47 ~~r~i~~gI---aE~~~vg~a~GlA~~G~~~~~~~~~f--~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g-~~~~- 118 (178)
T PF02779_consen 47 PGRFINTGI---AEQNMVGMAAGLALAGGLRPPVESTF--ADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAG-LGYG- 118 (178)
T ss_dssp TTTEEE--S----HHHHHHHHHHHHHHSSSEEEEEEEE--GGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEES-GGGS-
T ss_pred CceEEecCc---chhhccceeeeeeecccccceeEeec--cccccccchhhhhhhhhhhhcccceec-ceeecC-cccc-
Confidence 447775421 111 5889999888753 23333333 44555 222233 4667789988 555433 3210
Q ss_pred HHHHHhhcccccccccCCCCCcccCCccHHHHHhHc-CCCEeeeCCHHHHHHHHHHHHh--CCCcEEEEEE
Q 048725 564 QWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEAC-GIPGAQVTRKADLRAAIQTMLD--TPGPYLLDVI 631 (661)
Q Consensus 564 ~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~--~~gp~lIeV~ 631 (661)
.. |..+. ..+...+-+++ |+..+...++.|++.+++.+++ .++|++|-..
T Consensus 119 -------~~-------G~tH~----s~~d~~~~~~iPg~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~ 171 (178)
T PF02779_consen 119 -------GD-------GGTHH----SIEDEAILRSIPGMKVVVPSDPAEAKGLLRAAIRRESDGPVYIREP 171 (178)
T ss_dssp -------TT-------GTTTS----SSSHHHHHHTSTTEEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEE
T ss_pred -------cc-------ccccc----ccccccccccccccccccCCCHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 00 11110 13444444555 7888888999999999999999 6899987643
No 302
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=84.51 E-value=1.6 Score=50.92 Aligned_cols=116 Identities=15% Similarity=0.190 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHHHhCC---------------Cc--EEEEcCCc-c-chHHHHHHHHHHhCCCeeecCCCCCCCCC---C
Q 048725 275 PSEVHLEQIVRLISESK---------------KP--VLYVGGGC-L-NSSEELRKFVELTGIPVASTLMGLGSFPG---T 332 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~Ak---------------rP--vIv~G~g~-~-~a~~~l~~lae~lg~PV~tt~~gkg~~p~---~ 332 (661)
..+++++.+++.|++.+ +| |.+.|++. . ...-.+++|++.+|.+.+... ++-.... .
T Consensus 72 SWdeAld~iA~klk~i~~~~~~~~~~~g~~~~g~~si~~~gs~~~~nE~~~~~~kl~r~lGt~~id~~-ar~C~~~tv~~ 150 (649)
T cd02752 72 SWDEALDEIARKMKDIRDASFVEKNAAGVVVNRPDSIAFLGSAKLSNEECYLIRKFARALGTNNLDHQ-ARIUHSPTVAG 150 (649)
T ss_pred CHHHHHHHHHHHHHHHHHHhcccccccccccCCCceEEEEccCCCCchHHHHHHHHHHHhCCCcccCC-cchhhhHHHHH
Confidence 35788888888887643 33 55555443 2 334568899999998765432 1110000 0
Q ss_pred CCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCccc----ccCC-CCeEEEEcCCchhhcc
Q 048725 333 DELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLE----AFAS-RAKIVHIDIDSAEIGK 394 (661)
Q Consensus 333 hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~----~~~~-~~~vi~Id~d~~~i~~ 394 (661)
....+|. |...+. . .-++++|+||++|+...+.....+. .... .+++|+||+.......
T Consensus 151 l~~~~G~-ga~tns-~-~Di~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR~t~Ta~ 214 (649)
T cd02752 151 LANTFGR-GAMTNS-W-NDIKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPRFTRTAA 214 (649)
T ss_pred HHhhcCC-CCCCCC-H-HHHhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCCCCchhH
Confidence 0111121 111111 1 2368899999999987543221111 1223 6799999987765544
No 303
>PRK06154 hypothetical protein; Provisional
Probab=84.48 E-value=19 Score=41.51 Aligned_cols=160 Identities=13% Similarity=0.026 Sum_probs=94.4
Q ss_pred CCcHHHHHHHHHHHC-C-CCEEEecc-CCCcHHHHHHHHcCCCCeEEccCCh---hHHHHHHHHHHHHh-CCcEEEEEcc
Q 048725 87 PRKGADILVEALERQ-G-VTDVFAYP-GGASMEIHQALTRSNNIRNVLPRHE---QGGIFAAEGYARSS-GKPGICIATS 159 (661)
Q Consensus 87 ~~~gad~lv~~L~~~-G-V~~vFg~P-G~~~~~l~~aL~~~~~i~~v~~~hE---~~A~~~A~Gyar~t-g~~gv~~~ts 159 (661)
+++-.. +++.|.+. . =+.++..= |....-....+.-...-+++.+..= .-+.-+|.|.+.+. +|+.||++-=
T Consensus 380 ~l~p~~-~~~~l~~~l~~~d~iv~~D~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la~p~r~Vv~i~GD 458 (565)
T PRK06154 380 PINPYR-VVWELQHAVDIKTVIITHDAGSPRDQLSPFYVASRPGSYLGWGKTTQLGYGLGLAMGAKLARPDALVINLWGD 458 (565)
T ss_pred CcCHHH-HHHHHHHhcCCCCEEEEECCcccHHHHHHhCCCCCCCeEEccCCCcccccHHHHHHHHHHhCCCCcEEEEEcc
Confidence 455443 45555543 2 14555544 4433333333432222345543221 22667788888876 5788887543
Q ss_pred chhhHHHHHHHHHhhhCCCcEEEEecCCCCcc-c-------CCC---CCCCCCHHHHhhcccccccccCCcCcHHHHHHH
Q 048725 160 GPGATNLVSGLADALLDSVPLVAITGQVPRRM-I-------GTD---AFQETPIVEVTRSITKHNYLVLDVDDIPRIVRE 228 (661)
Q Consensus 160 GpG~~N~l~gl~~A~~~~iPll~ItG~~p~~~-~-------g~~---~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~ 228 (661)
| |+.=.+..|..|...++|+++|.-...... + +.. .....|...+.+.+-....++.+++++...+++
T Consensus 459 G-~f~m~~~EL~Ta~r~~lpi~~vV~NN~~yg~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~g~~V~~~~el~~al~~ 537 (565)
T PRK06154 459 A-AFGMTGMDFETAVRERIPILTILLNNFSMGGYDKVMPVSTTKYRATDISGDYAAIARALGGYGERVEDPEMLVPALLR 537 (565)
T ss_pred h-HHhccHHHHHHHHHhCCCeEEEEEECCccceeehhhhhhcCcccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHH
Confidence 4 233334689999999999999986554211 0 000 001246667777776677889999999888888
Q ss_pred HHHHhhcCCCceEEEEeccchh
Q 048725 229 AFLLATSGRPGPVLIDVPKDIQ 250 (661)
Q Consensus 229 A~~~a~s~~~GPV~I~iP~dv~ 250 (661)
|+..... .+|+.|++..|-.
T Consensus 538 a~~~~~~--~~p~lIev~v~~~ 557 (565)
T PRK06154 538 ALRKVKE--GTPALLEVITSEE 557 (565)
T ss_pred HHhhccC--CCeEEEEEEeChH
Confidence 8864322 4799999987643
No 304
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=84.44 E-value=1.1 Score=45.96 Aligned_cols=62 Identities=18% Similarity=0.128 Sum_probs=43.5
Q ss_pred HHHHhhhcCCEEEEeCCCCCCCcCCccc--ccCCCCeEEEEcCCchhhccCCCCcceEeccHHHHH
Q 048725 347 YANYAVDKSDLLLAFGVRFDDRVTGKLE--AFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLAL 410 (661)
Q Consensus 347 ~a~~~l~~aDlvL~vG~~~~~~~t~~~~--~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L 410 (661)
.+.+.+++||++|++|+++.-.....+- ....++++|.|+.++..+.+ ..++.+.+++.++|
T Consensus 197 ~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~~~t~~d~--~a~~~i~~~~~~~l 260 (260)
T cd01409 197 TAAARLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNIGPTRADH--LATLKVDARCGEVL 260 (260)
T ss_pred HHHHHHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcCCCCCCCc--cccEEEeCChhhhC
Confidence 3456778999999999998654333322 22356789999999887653 35778888876653
No 305
>KOG3954 consensus Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=83.63 E-value=4.8 Score=40.57 Aligned_cols=128 Identities=22% Similarity=0.317 Sum_probs=77.6
Q ss_pred CHHHHHHHH-HHHHhCCCc------EEEEcCCcc---chHHHHHHHHHHhCCCeeecCCC--CCCCCCCCCCCCcccCCC
Q 048725 276 SEVHLEQIV-RLISESKKP------VLYVGGGCL---NSSEELRKFVELTGIPVASTLMG--LGSFPGTDELSLQMLGMH 343 (661)
Q Consensus 276 ~~~~l~~~~-~~L~~AkrP------vIv~G~g~~---~a~~~l~~lae~lg~PV~tt~~g--kg~~p~~hpl~lg~~G~~ 343 (661)
.+..+.+.+ +.|.+++|| +++.|+... +..+.|-.||+++|+-|-.|-.+ .|..| +.+-.| ..
T Consensus 195 ~~~~~se~v~~~ltkseRPdL~sAkvVVsGGR~LKs~enFkll~~LAdklgaavGAtRaaVDaGyvp--NdlQiG---QT 269 (336)
T KOG3954|consen 195 KPVSLSEWVSQELTKSERPDLTSAKVVVSGGRGLKSGENFKLLYDLADKLGAAVGATRAAVDAGYVP--NDLQIG---QT 269 (336)
T ss_pred ChhHHHHHHHhhcccccCCccccceEEEECCcccCCcccceehHHHHHHhchhhchhhhhhccCcCC--Cccccc---cc
Confidence 344444443 346667777 788887664 23567889999999998655332 34443 233333 33
Q ss_pred CcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcceEeccHHHHHHHHHHHhc
Q 048725 344 GTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILG 418 (661)
Q Consensus 344 g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 418 (661)
|. +-...|-|++|..=--. .+.-....+.++-|+-||+.- -+.-.|+++++|+-..+.+|.+.|.
T Consensus 270 GK------IVAPeLYiAvGisGAIQ---HLAGmKDSKvIvAINkDpdAP-IFqvAD~GlvgDLfkiVPELtekL~ 334 (336)
T KOG3954|consen 270 GK------IVAPELYIAVGISGAIQ---HLAGMKDSKVIVAINKDPDAP-IFQVADYGLVGDLFKIVPELTEKLP 334 (336)
T ss_pred cc------eeccceEEEEeccHHHH---HhhcCccceEEEEecCCCCCC-ceeeecccchhhHHHHhHHHHHhcc
Confidence 32 33567888998552100 011112233467787777641 1234689999999999999988775
No 306
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=83.49 E-value=9.2 Score=44.03 Aligned_cols=115 Identities=17% Similarity=0.146 Sum_probs=73.2
Q ss_pred CeEEccCCh---hHHHHHHHHHHHHhCCcEEEEEccchhhHH-HHHHHHHhhhCCCcEEEEecCCCCcc----c--CCC-
Q 048725 127 IRNVLPRHE---QGGIFAAEGYARSSGKPGICIATSGPGATN-LVSGLADALLDSVPLVAITGQVPRRM----I--GTD- 195 (661)
Q Consensus 127 i~~v~~~hE---~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N-~l~gl~~A~~~~iPll~ItG~~p~~~----~--g~~- 195 (661)
.+++..+.- ..+.-+|.|++.+.+|+.+|++ |=|... .++.+..|...++|+++|.-+..... + +++
T Consensus 416 ~~~~~~~g~~~~G~~lpaaiGaala~~~~vv~i~--GDGsf~~~~~eL~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~~~~ 493 (568)
T PRK07449 416 YPVYSNRGASGIDGLLSTAAGVARASAKPTVALI--GDLSFLHDLNGLLLLKQVPAPLTIVVVNNNGGGIFSLLPQPEEE 493 (568)
T ss_pred ceEEecCCccchhhHHHHHHHHHhcCCCCEEEEe--chHHhhcCcHHHHhhcccCCCeEEEEEECCCCccccCCCCCCCc
Confidence 445544332 2256789999988778887765 433333 35788889999999999886544211 0 000
Q ss_pred --------CCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 196 --------AFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 196 --------~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
.....|...+.+.+--..+++.+++++...+++|+. .+||+.|++..|
T Consensus 494 ~~~~~~~~~~~~~df~~lA~a~G~~~~~V~~~~eL~~al~~a~~-----~~~p~lIev~id 549 (568)
T PRK07449 494 PVFERFFGTPHGVDFAHAAAMYGLEYHRPETWAELEEALADALP-----TPGLTVIEVKTN 549 (568)
T ss_pred chhhHhhcCCCCCCHHHHHHHcCCCccCCCCHHHHHHHHHHHhc-----CCCCEEEEEeCC
Confidence 012245555666665556678888887777777652 358999999765
No 307
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=83.05 E-value=20 Score=41.41 Aligned_cols=105 Identities=25% Similarity=0.342 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEecCCCCcc--------cCCC----CCCCCCHHH
Q 048725 138 GIFAAEGYARSS-GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRM--------IGTD----AFQETPIVE 204 (661)
Q Consensus 138 A~~~A~Gyar~t-g~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~~--------~g~~----~~q~~~~~~ 204 (661)
+.-+|.|.+.+. +|+.+|++-=| ++.-.+..+..|...++|+++|.-+..... .+.. .++..|...
T Consensus 413 ~~paAiGa~la~p~~~vv~i~GDG-sf~~~~~el~Ta~~~~lpv~~vV~NN~~~g~i~~~q~~~~~~~~~~~~~~~df~~ 491 (578)
T PRK06546 413 ALPHAIGAQLADPGRQVISMSGDG-GLSMLLGELLTVKLYDLPVKVVVFNNSTLGMVKLEMLVDGLPDFGTDHPPVDYAA 491 (578)
T ss_pred hhHHHHHHHHhCCCCcEEEEEcCc-hHhhhHHHHHHHHHhCCCeEEEEEECCccccHHHHHHhcCCCcccccCCCCCHHH
Confidence 445889988876 56777765433 233345788899999999999986543211 0100 134567777
Q ss_pred HhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 205 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 205 ~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
+.+.+--...++.+++++.+.+++|+. ..||+.|++..|
T Consensus 492 lA~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIev~~~ 530 (578)
T PRK06546 492 IAAALGIHAVRVEDPKDVRGALREAFA-----HPGPALVDVVTD 530 (578)
T ss_pred HHHHCCCeeEEeCCHHHHHHHHHHHHh-----CCCCEEEEEEeC
Confidence 777776666788888888777777764 258999999865
No 308
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=82.91 E-value=13 Score=40.09 Aligned_cols=112 Identities=16% Similarity=0.142 Sum_probs=64.9
Q ss_pred CCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCccccc-ChHHH-HHHHHcC--------CCeEEEEEeCCcch
Q 048725 491 RPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIM-NVQEL-ATIKVEK--------LPIKILLLNNQHLG 560 (661)
Q Consensus 491 ~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~-~~~eL-~ta~~~~--------lpv~ivV~NN~g~g 560 (661)
.|.+++..+- +=...++.|.|+|++- .++++.+.. ..|++ .+..| ..++..+ +||+++..+ +++.
T Consensus 72 ~P~R~~d~GI--AEq~~vg~AaGlA~~G-~~P~v~~~~-~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~~~ 146 (356)
T PLN02683 72 GPDRVLDTPI--TEAGFTGIGVGAAYAG-LKPVVEFMT-FNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPN-GAAA 146 (356)
T ss_pred CCCcEEECch--hHHHHHHHHHHHHHCC-CEEEEEEeh-hhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeC-CCCC
Confidence 4788876421 1222688888888763 355544321 12333 23333 3345444 898887544 4311
Q ss_pred hHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHc-CCCEeeeCCHHHHHHHHHHHHhCCCcEEEE
Q 048725 561 MVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEAC-GIPGAQVTRKADLRAAIQTMLDTPGPYLLD 629 (661)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lIe 629 (661)
+. |.-+. ..+ ..+-+++ |+......+..|++.+++.+++.++|++|-
T Consensus 147 ----------g~-------G~tH~----~~~-~a~lr~iPnl~V~~Pad~~e~~~~l~~a~~~~gPv~ir 194 (356)
T PLN02683 147 ----------GV-------GAQHS----QCF-AAWYSSVPGLKVLAPYSSEDARGLLKAAIRDPDPVVFL 194 (356)
T ss_pred ----------CC-------CCccc----cCH-HHHHhcCCCCEEEEeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 10 11010 023 3444444 677778899999999999999888999884
No 309
>PLN02573 pyruvate decarboxylase
Probab=82.83 E-value=6.7 Score=45.30 Aligned_cols=107 Identities=11% Similarity=0.028 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEecCCCCcc-c----CC--CCCCCCCHHHHhhcc
Q 048725 138 GIFAAEGYARSS-GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRM-I----GT--DAFQETPIVEVTRSI 209 (661)
Q Consensus 138 A~~~A~Gyar~t-g~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~~-~----g~--~~~q~~~~~~~~~~i 209 (661)
+.-+|.|++.+. +|+.||++-=| |+.=.+.-|..|...++|+++|.-...... + +. ...+..|...+.+.+
T Consensus 433 glpaaiGa~lA~p~r~vv~i~GDG-~f~m~~~EL~Ta~r~~lpvv~vV~NN~~yg~~~~~~~~~~~~~~~~d~~~lA~a~ 511 (578)
T PLN02573 433 SVGATLGYAQAAPDKRVIACIGDG-SFQVTAQDVSTMIRCGQKSIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAI 511 (578)
T ss_pred hhhHHHHHHHhCCCCceEEEEecc-HHHhHHHHHHHHHHcCCCCEEEEEeCCceeEEEeecccCccccCCCCHHHHHHHh
Confidence 445688888876 57777765433 333334789999999999999986554211 1 00 112334566666665
Q ss_pred c-----ccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 210 T-----KHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 210 t-----k~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
- .+..+|.+.+++.+.+++|+.. ...||..|++..|
T Consensus 512 G~~~g~~~~~~V~~~~eL~~al~~a~~~---~~~~p~lieV~v~ 552 (578)
T PLN02573 512 HNGEGKCWTAKVRTEEELIEAIATATGE---KKDCLCFIEVIVH 552 (578)
T ss_pred cCcCCceeEEEecCHHHHHHHHHHHHhh---CCCCcEEEEEEcC
Confidence 2 4556888888888888887643 1358999999875
No 310
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=82.62 E-value=37 Score=38.72 Aligned_cols=150 Identities=17% Similarity=0.214 Sum_probs=87.6
Q ss_pred cHHHHHHHHHHHCCCC--EEEe----ccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchh
Q 048725 89 KGADILVEALERQGVT--DVFA----YPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPG 162 (661)
Q Consensus 89 ~gad~lv~~L~~~GV~--~vFg----~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG 162 (661)
..++++.+.|.+..-+ .+.+ .|++.-+.-+. ++.|.=.+=...-||.|+-+|.|.|...-||.|++-+ +=
T Consensus 317 sys~vf~~~L~~~a~~d~~ivaITaAM~~gtGL~~F~--~~fP~R~fDVGIAEQHAVT~AAGlA~~G~kPvvaIYS--TF 392 (627)
T COG1154 317 SYTKVFGDTLCELAAKDEKIVAITAAMPEGTGLVKFS--KKFPDRFFDVGIAEQHAVTFAAGLAAEGMKPVVAIYS--TF 392 (627)
T ss_pred CHHHHHHHHHHHHHhhCCCeEEEecCCCCCCChHHHH--HhCchhheehhhhHHHHHHHHHHHHhCCCCCEEEEec--HH
Confidence 3666666666554432 3333 34444322222 2234222333478999999999999999999999764 22
Q ss_pred hHHHHH-HHHHhhhCCCcEEEEecCCCCcccCC--CCCCCCCHHHHhhcccccccc-cCCcCcHHHHHHHHHHHhhcCCC
Q 048725 163 ATNLVS-GLADALLDSVPLVAITGQVPRRMIGT--DAFQETPIVEVTRSITKHNYL-VLDVDDIPRIVREAFLLATSGRP 238 (661)
Q Consensus 163 ~~N~l~-gl~~A~~~~iPll~ItG~~p~~~~g~--~~~q~~~~~~~~~~itk~~~~-v~~~~~i~~~i~~A~~~a~s~~~ 238 (661)
+-=++- =+.+-...+.||++..-... ..|. ..+|-+=...+++.+....+. +.+.+++.++++.|+.. .-
T Consensus 393 LQRAYDQliHDvaiqnLPV~faIDRAG--ivG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el~~ml~ta~~~----~~ 466 (627)
T COG1154 393 LQRAYDQLIHDVAIQNLPVTFAIDRAG--IVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQMLYTALAQ----DD 466 (627)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEecCc--ccCCCCCccccHHHHHHHhcCCCcEEecCCCHHHHHHHHHHHHhc----CC
Confidence 222222 23556678999998763111 1222 123443335667776655443 44556677777766665 34
Q ss_pred ceEEEEeccc
Q 048725 239 GPVLIDVPKD 248 (661)
Q Consensus 239 GPV~I~iP~d 248 (661)
||+.|..|..
T Consensus 467 gP~AiRyPrg 476 (627)
T COG1154 467 GPVAIRYPRG 476 (627)
T ss_pred CCeEEEecCC
Confidence 8999999975
No 311
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=82.24 E-value=7.9 Score=44.23 Aligned_cols=105 Identities=16% Similarity=0.136 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhCCcEEEEEccchhhHH-HHHHHHHhhhCCCcEEEEecCCCCcc-c----C---CCCCCCCCHHHHhhc
Q 048725 138 GIFAAEGYARSSGKPGICIATSGPGATN-LVSGLADALLDSVPLVAITGQVPRRM-I----G---TDAFQETPIVEVTRS 208 (661)
Q Consensus 138 A~~~A~Gyar~tg~~gv~~~tsGpG~~N-~l~gl~~A~~~~iPll~ItG~~p~~~-~----g---~~~~q~~~~~~~~~~ 208 (661)
+.-+|.|.+.+.++..||++ |=|... .+.-|..|...++|+++|.-...... + . ...+...|...+.+.
T Consensus 408 glpaaiGa~lA~~~r~v~i~--GDG~f~m~~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~~~~~~~~~~~~~~d~~~lA~a 485 (535)
T TIGR03394 408 GVPAGIGAQCTSGKRILTLV--GDGAFQMTGWELGNCRRLGIDPIVILFNNASWEMLRVFQPESAFNDLDDWRFADMAAG 485 (535)
T ss_pred HHHHHHHHHhCCCCCeEEEE--eChHHHhHHHHHHHHHHcCCCcEEEEEECCccceeehhccCCCcccCCCCCHHHHHHH
Confidence 44567888877766667653 444333 35889999999999999986554211 0 0 011223466667777
Q ss_pred ccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 209 ITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 209 itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
+--...++.+++++...+++|+.. +.+|+.|++..|
T Consensus 486 ~G~~~~~v~~~~eL~~al~~a~~~----~~~p~lIev~i~ 521 (535)
T TIGR03394 486 MGGDGVRVRTRAELAAALDKAFAT----RGRFQLIEAMLP 521 (535)
T ss_pred cCCCceEeCCHHHHHHHHHHHHhc----CCCeEEEEEECC
Confidence 766777888988888888887752 235889999865
No 312
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=81.84 E-value=8.1 Score=42.92 Aligned_cols=42 Identities=12% Similarity=0.084 Sum_probs=32.1
Q ss_pred HHHHHhHcCCCEeee--CCHHHHHHHHHHHHh----CCCcEEEEEEeC
Q 048725 592 MLKFAEACGIPGAQV--TRKADLRAAIQTMLD----TPGPYLLDVIFP 633 (661)
Q Consensus 592 ~~~~A~a~G~~~~~v--~~~~el~~al~~a~~----~~gp~lIeV~~~ 633 (661)
-..+|++++++...| ++++|+..+-+-|++ -.+-++|+..+-
T Consensus 378 csDiaK~~~~pviHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~Cf 425 (913)
T KOG0451|consen 378 CSDIAKSIQAPVIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCF 425 (913)
T ss_pred hhHHHHHhCCCEEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHH
Confidence 356899999999888 699999887776665 246778887663
No 313
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=81.09 E-value=9.3 Score=44.29 Aligned_cols=109 Identities=18% Similarity=0.186 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHh-CCcEEEEEccchhhH-HHHHHHHHhhhCCCcEEEEecCCCCc-ccCC------C------CCCCCC
Q 048725 137 GGIFAAEGYARSS-GKPGICIATSGPGAT-NLVSGLADALLDSVPLVAITGQVPRR-MIGT------D------AFQETP 201 (661)
Q Consensus 137 ~A~~~A~Gyar~t-g~~gv~~~tsGpG~~-N~l~gl~~A~~~~iPll~ItG~~p~~-~~g~------~------~~q~~~ 201 (661)
.+.-+|.|.+.+. .++.++++-=| ++. +.+..|..|...++|+++|.-+.... +.+. + .++..|
T Consensus 407 ~~~~~AiGa~~a~p~~~Vv~i~GDG-~f~~~g~~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~~~~~~~~~~~~d 485 (595)
T TIGR03336 407 ASIGVASGLSKAGEKQRIVAFIGDS-TFFHTGIPGLINAVYNKANITVVILDNRITAMTGHQPNPGTGVTGMGEATKEIS 485 (595)
T ss_pred chHHHHhhhhhcCCCCCEEEEeccc-hhhhcCHHHHHHHHHcCCCeEEEEEcCcceeccCCCCCCCCCCCCCCCcCCCcC
Confidence 3455788888776 56666654333 333 34899999999999999887554321 1110 0 113456
Q ss_pred HHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 202 IVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 202 ~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
...+.+.+--...++.+++++.+ +..|++.+... +||..|++..+
T Consensus 486 ~~~ia~a~G~~~~~v~~~~~l~~-l~~al~~a~~~-~gp~li~v~~~ 530 (595)
T TIGR03336 486 IEELCRASGVEFVEVVDPLNVKE-TIEVFKAALAA-EGVSVIIAKQP 530 (595)
T ss_pred HHHHHHHcCCCEEEEeCcCCHHH-HHHHHHHHHhc-CCCEEEEEccc
Confidence 77777777656667778877532 33444444433 58999998754
No 314
>KOG1905 consensus Class IV sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=80.25 E-value=3.4 Score=42.41 Aligned_cols=71 Identities=21% Similarity=0.343 Sum_probs=54.1
Q ss_pred HHHHhhhcCCEEEEeCCCCCCCcCCcc--cccCCCCeEEEEcCCchhhccCCCCcceEeccHHHHHHHHHHHhcC
Q 048725 347 YANYAVDKSDLLLAFGVRFDDRVTGKL--EAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGG 419 (661)
Q Consensus 347 ~a~~~l~~aDlvL~vG~~~~~~~t~~~--~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~ 419 (661)
.+.+.-+.||++|.+|+.+--...+.+ .......|++.|+..+...+ ..+.+.|.++++.++..|.+.|.-
T Consensus 209 ~a~~a~~~Ad~~lcLGTSLqI~p~g~lpl~~~k~g~K~~ivNlQ~T~hD--k~A~l~Ihg~vd~Vm~~lm~~Lgv 281 (353)
T KOG1905|consen 209 RATKAAKRADLILCLGTSLQILPKGNLPLKMKKRGGKIVIVNLQWTPHD--KIANLKIHGKVDLVMASLMELLGV 281 (353)
T ss_pred HHHHHhhhcceEEEeccceEeeeCCCcchhHhccCceEEEEeCccCccc--chhheeehhhHHHHHHHHHHHhCC
Confidence 455667899999999999865544443 33346678999988877544 467789999999999999998853
No 315
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=80.00 E-value=6.7 Score=46.12 Aligned_cols=116 Identities=15% Similarity=0.110 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHHh------CCCcEEEEcCCcc-chHHHHHHHHHH-hCCCeeecCCCCCCCCC--CCCCCCcccCCCC
Q 048725 275 PSEVHLEQIVRLISE------SKKPVLYVGGGCL-NSSEELRKFVEL-TGIPVASTLMGLGSFPG--TDELSLQMLGMHG 344 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~------AkrPvIv~G~g~~-~a~~~l~~lae~-lg~PV~tt~~gkg~~p~--~hpl~lg~~G~~g 344 (661)
..+++++.+++.|++ .++..++.|.+.. .....+.+|++. +|.+-+.........+. .+...+|.. ..+
T Consensus 69 sWdeAl~~ia~~l~~~~~~~g~~~v~~~~~~~~~~e~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~G~~-~~~ 147 (671)
T TIGR01591 69 SWDEAISYIAEKLKEIKEKYGPDSIGFIGSSRGTNEENYLLQKLARAVIGTNNVDNCARVCHGPSVAGLKQTVGIG-AMS 147 (671)
T ss_pred cHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCcccHHHHHHHHHHHHhcCCccccCCCCceehhhhHHHHHhhCCC-CCC
Confidence 357888888888873 3455666666543 334567889996 88875543211110000 011111211 111
Q ss_pred cHHHHHhhhcCCEEEEeCCCCCCCcCCc---c-cccCCCCeEEEEcCCchhhc
Q 048725 345 TVYANYAVDKSDLLLAFGVRFDDRVTGK---L-EAFASRAKIVHIDIDSAEIG 393 (661)
Q Consensus 345 ~~~a~~~l~~aDlvL~vG~~~~~~~t~~---~-~~~~~~~~vi~Id~d~~~i~ 393 (661)
.. .+-+++||+||++|+.+....... + ....+.+++|.||.......
T Consensus 148 ~~--~~di~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvidp~~s~ta 198 (671)
T TIGR01591 148 NT--ISEIENADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVIDPRKTETA 198 (671)
T ss_pred CC--HHHHHhCCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEECCCCChhh
Confidence 11 124788999999999864432211 1 12235679999998766544
No 316
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=79.79 E-value=11 Score=42.12 Aligned_cols=117 Identities=19% Similarity=0.122 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHhC-----CCcEEEE-cCCcc--chHHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCCcH
Q 048725 275 PSEVHLEQIVRLISES-----KKPVLYV-GGGCL--NSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTV 346 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~A-----krPvIv~-G~g~~--~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g~~ 346 (661)
..+++++.+++.|++. .+-+.+. |.+.. .......+|+..+|.+-+......+..+......+|. ....
T Consensus 86 sWdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gs~~~~~~~~~~~~~~~~~~~~G~---~~~~ 162 (461)
T cd02750 86 SWDEALELIADAIIDTIKKYGPDRVIGFSPIPAMSMVSYAAGSRFASLIGGVSLSFYDWYGDLPPGSPQTWGE---QTDV 162 (461)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCceEEeeccCCcccchhhHHHHHHHHhcCCccCCCCCcccchhhhhhhhcCC---CCCC
Confidence 4678888888877632 2224333 32322 2234567899999977654322212122222322232 1111
Q ss_pred HHHHhhhcCCEEEEeCCCCCCCcCCc---ccc-cCCCCeEEEEcCCchhhcc
Q 048725 347 YANYAVDKSDLLLAFGVRFDDRVTGK---LEA-FASRAKIVHIDIDSAEIGK 394 (661)
Q Consensus 347 ~a~~~l~~aDlvL~vG~~~~~~~t~~---~~~-~~~~~~vi~Id~d~~~i~~ 394 (661)
...+-+++||+||++|+...+..... +.. -...+++|.||+.......
T Consensus 163 ~~~~d~~~ad~il~~G~N~~~~~~~~~~~l~~ar~~GaklividPr~s~ta~ 214 (461)
T cd02750 163 PESADWYNADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVVSPDYSPSAK 214 (461)
T ss_pred CChhHHhcCcEEEEECCChHHccCchHHHHHHHHHCCCEEEEEcCCCCcchh
Confidence 11234689999999999864432211 111 1245799999998766554
No 317
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=79.56 E-value=8.6 Score=46.11 Aligned_cols=112 Identities=13% Similarity=0.011 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHHHhC------CCcEEEEcCCcc-chHHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcccC--CCCc
Q 048725 275 PSEVHLEQIVRLISES------KKPVLYVGGGCL-NSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLG--MHGT 345 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~A------krPvIv~G~g~~-~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G--~~g~ 345 (661)
..+++++.+++.|++. +...++.|+... .....+.+|++.+|.+.+....... .........| ..+.
T Consensus 288 SWdeAl~~ia~~L~~i~~~~G~~~i~~~~s~~~t~e~~~~~~~f~~~~Gt~n~~~~~~~~----~~~~~~~~~g~~~~~~ 363 (776)
T PRK09129 288 DWETALEYVAEGLKGIIEDHGADQIGALASPHSTLEELYLLQKLARGLGSGNIDHRLRQQ----DFRDDAAAPGAPWLGM 363 (776)
T ss_pred CHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCCHHHHHHHHHHHHHhCCCccccccCCc----cccchhhhhcccccCC
Confidence 4677888888887753 334555554443 3345788999999987654211110 0000001111 1122
Q ss_pred HHHHHhhhcCCEEEEeCCCCCCCcCCccc----ccCCCCeEEEEcCCchhh
Q 048725 346 VYANYAVDKSDLLLAFGVRFDDRVTGKLE----AFASRAKIVHIDIDSAEI 392 (661)
Q Consensus 346 ~~a~~~l~~aDlvL~vG~~~~~~~t~~~~----~~~~~~~vi~Id~d~~~i 392 (661)
. .+-+.++|+||++|+.+.+.....+. ...++.++|.||....+.
T Consensus 364 ~--~~Di~~ad~Il~~G~N~~~~~p~~~~~i~~a~~~G~klividpr~t~~ 412 (776)
T PRK09129 364 P--IAELSNLDAVLVVGSNLRKEHPLLAARLRQAAKNGAKLSAINPVDDDF 412 (776)
T ss_pred C--HHHHHhCCEEEEEecCcchhcHHHHHHHHHHHHCCCeEEEecCCcccc
Confidence 1 23467899999999987543221111 123467899999866543
No 318
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=79.21 E-value=5.8 Score=46.05 Aligned_cols=115 Identities=17% Similarity=0.145 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCcc-chHHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCCcHHHHHhhh
Q 048725 275 PSEVHLEQIVRLISESKKPVLYVGGGCL-NSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVD 353 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~AkrPvIv~G~g~~-~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~ 353 (661)
..+++++.+++.|++.++..++.|.... .....+.+|++.+|.+-+........... .+...+. ..|.. .+-++
T Consensus 287 sWdeAl~~ia~kL~~i~~va~~~~~~~~~e~~~~~~~~~~~lGt~~~~~~~~~~~~~~-~~~~~~~--~~g~~--~~di~ 361 (603)
T TIGR01973 287 SWAEALAIAAEKLKASSRIGGIAGPRSSLEELFALKKLVRKLGSENFDLRIRNYEFES-ADLRANY--LFNTT--LADIE 361 (603)
T ss_pred CHHHHHHHHHHHHhccCcEEEEeCCCCCHHHHHHHHHHHHHhCCCccccccccccccc-chhhccc--ccCCC--HHHHH
Confidence 4578888889999887666666665443 33456889999998764332111100000 0100010 11111 22467
Q ss_pred cCCEEEEeCCCCCCCcCCc---cc-ccCCC-CeEEEEcCCchhhcc
Q 048725 354 KSDLLLAFGVRFDDRVTGK---LE-AFASR-AKIVHIDIDSAEIGK 394 (661)
Q Consensus 354 ~aDlvL~vG~~~~~~~t~~---~~-~~~~~-~~vi~Id~d~~~i~~ 394 (661)
++|+||++|+.+.+..... +. ...++ +++|.||+.......
T Consensus 362 ~ad~il~~G~N~~~s~p~~~~~i~~a~~~ggaklividpr~s~ta~ 407 (603)
T TIGR01973 362 EADLVLLVGADLRQEAPLLNLRLRKAVKKGGAKVALIGIEKWNLTY 407 (603)
T ss_pred hCCEEEEEccCchhhhHHHHHHHHHHHhcCCcEEEEECCccccchh
Confidence 8999999999875432211 11 12233 799999976655443
No 319
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=79.03 E-value=9.6 Score=43.59 Aligned_cols=104 Identities=13% Similarity=0.132 Sum_probs=66.1
Q ss_pred HHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEecCCCCcc-----cCC-CC---CCCCCHHHHhhc
Q 048725 139 IFAAEGYARSS-GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRM-----IGT-DA---FQETPIVEVTRS 208 (661)
Q Consensus 139 ~~~A~Gyar~t-g~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~~-----~g~-~~---~q~~~~~~~~~~ 208 (661)
.-+|.|.+.+. +|+.+|++-=| |+.=.+.-|..|...++|+++|.-+..... .+. .. +...|...+.+.
T Consensus 410 lpaaiGa~la~p~~~vv~i~GDG-~f~m~~~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~~~~~~~~~~df~~la~a 488 (539)
T TIGR03393 410 LPAAFGAQTACPNRRVILLIGDG-SAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHLPQA 488 (539)
T ss_pred HHHHHHHHhcCCCCCeEEEEcCc-HHHhHHHHHHHHHHcCCCCEEEEEeCCceEEEEeecCCCCCcCcCCCCCHHHHHHH
Confidence 34577776665 57777765433 333335788999999999999886554211 110 11 122355556555
Q ss_pred ccc----cccccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 209 ITK----HNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 209 itk----~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
+-. +..++.+.+++...+++|+. ..||+.|++..|
T Consensus 489 ~G~~~~~~~~~v~~~~el~~al~~a~~-----~~~p~liev~i~ 527 (539)
T TIGR03393 489 LSLDPQSECWRVSEAEQLADVLEKVAA-----HERLSLIEVVLP 527 (539)
T ss_pred cCCCCccceEEeccHHHHHHHHHHHhc-----cCCeEEEEEEcC
Confidence 533 35788888888877777763 258999999865
No 320
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=79.02 E-value=22 Score=41.02 Aligned_cols=113 Identities=17% Similarity=0.199 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHhC--CCcEEEEcCCcc-chHHHHHHHHHHhCCCeeecCCCCCCCCCC--CCCCCcccCCCCcHHHH
Q 048725 275 PSEVHLEQIVRLISES--KKPVLYVGGGCL-NSSEELRKFVELTGIPVASTLMGLGSFPGT--DELSLQMLGMHGTVYAN 349 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~A--krPvIv~G~g~~-~a~~~l~~lae~lg~PV~tt~~gkg~~p~~--hpl~lg~~G~~g~~~a~ 349 (661)
..+++++.+++.|++. ++.+++.++... ...-..+.|++.+|.+-+.........+.. ....+|. | .++...
T Consensus 82 SWDEAl~~IA~kL~~~~~~~~~~y~sg~~snE~~~l~q~f~r~lGt~n~~~~s~~C~~~~~~al~~~~G~-~-~~t~~~- 158 (574)
T cd02767 82 SWDEAFAEIAARLRALDPDRAAFYTSGRASNEAAYLYQLFARAYGTNNLPDCSNMCHEPSSVGLKKSIGV-G-KGTVSL- 158 (574)
T ss_pred cHHHHHHHHHHHHhhhCCCcEEEEecCCCccHHHHHHHHHHHHhCCCCcCCCCCCcchHHHhHHHHhcCC-C-CCCCCH-
Confidence 4678888888888776 344555544333 334456789999997644321111100000 0111121 0 111112
Q ss_pred HhhhcCCEEEEeCCCCCCCcCCccc----ccCCCCeEEEEcCCch
Q 048725 350 YAVDKSDLLLAFGVRFDDRVTGKLE----AFASRAKIVHIDIDSA 390 (661)
Q Consensus 350 ~~l~~aDlvL~vG~~~~~~~t~~~~----~~~~~~~vi~Id~d~~ 390 (661)
+-+.++|+||++|..........+. .....+|+|.||+..+
T Consensus 159 ~Di~~ad~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvIdP~~~ 203 (574)
T cd02767 159 EDFEHTDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLRE 203 (574)
T ss_pred HHHhcCCEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEECCCcc
Confidence 2467899999999987543221111 1235679999998654
No 321
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=78.07 E-value=9.4 Score=41.36 Aligned_cols=111 Identities=16% Similarity=0.068 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHHhCC--CcEEEEcCCcc-chHHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCCcHHHHHh
Q 048725 275 PSEVHLEQIVRLISESK--KPVLYVGGGCL-NSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYA 351 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~Ak--rPvIv~G~g~~-~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g~~~a~~~ 351 (661)
..+++++.+++.|.+.+ +-.+++|.... ...-.+++|++.+|...+..-......+..+... +......+ -.-
T Consensus 70 sW~eAl~~ia~~l~~~~~~~i~~i~g~~~t~E~~~~lkkl~~~lgs~n~d~~~~~~~~~~~~~~~-~~~~~~~s---l~d 145 (366)
T cd02774 70 GWKTAFKFLNKFILLKKFSKLNFIIGSKIDLETLFYYKKLLNKLGSLNTNSNNFLENNNYFNLDL-ENYLFNNS---LKN 145 (366)
T ss_pred CHHHHHHHHHHHHhhcCcccEEEEECCCCCHHHHHHHHHHHHHhCCCceeccccccccccccccc-cCCccCCC---HHH
Confidence 46778888888886543 44666666543 4566789999999988776432221111111111 22111111 123
Q ss_pred hhcCCEEEEeCCCCCCCcCC---cc-ccc-CCCCeEEEEcCCc
Q 048725 352 VDKSDLLLAFGVRFDDRVTG---KL-EAF-ASRAKIVHIDIDS 389 (661)
Q Consensus 352 l~~aDlvL~vG~~~~~~~t~---~~-~~~-~~~~~vi~Id~d~ 389 (661)
++++|+||++|+.+.+-... .+ +.+ ..+.+++.|+...
T Consensus 146 ie~ad~illiG~n~~~e~Pvl~~rlrka~~~~~~ki~vi~~~~ 188 (366)
T cd02774 146 LDKSDLCLLIGSNLRVESPILNIRLRNRYNKGNKKIFVIGNKF 188 (366)
T ss_pred HhhCCEEEEEcCCcchhhHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 78999999999987543211 11 122 2357898888655
No 322
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=77.98 E-value=27 Score=37.68 Aligned_cols=36 Identities=11% Similarity=0.312 Sum_probs=29.5
Q ss_pred HHHHhHc-CCCEeeeCCHHHHHHHHHHHHhCCCcEEE
Q 048725 593 LKFAEAC-GIPGAQVTRKADLRAAIQTMLDTPGPYLL 628 (661)
Q Consensus 593 ~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lI 628 (661)
..+.+++ |+......+..|++.+++.+++.++|++|
T Consensus 165 ea~lr~iPn~~V~~Psd~~e~~~~l~~a~~~~~P~~i 201 (355)
T PTZ00182 165 EAYFAHVPGLKVVAPSDPEDAKGLLKAAIRDPNPVVF 201 (355)
T ss_pred HHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCcEEE
Confidence 3555555 67777889999999999999998999977
No 323
>TIGR00300 conserved hypothetical protein TIGR00300. All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family.
Probab=77.65 E-value=3.1 Score=44.44 Aligned_cols=104 Identities=19% Similarity=0.232 Sum_probs=71.7
Q ss_pred HHHHHHHhCCCeeec--CCCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEE
Q 048725 308 LRKFVELTGIPVAST--LMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHI 385 (661)
Q Consensus 308 l~~lae~lg~PV~tt--~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~I 385 (661)
+..-+-+.++|++-. ..-.|-+|+-+.-. ..++..-.+.++.+|+||.+.+-+-...+++. .+...+++.|
T Consensus 296 imy~cvk~~VPfVLAGSIRDDGPLPdvitDv-----~~AQ~amR~~~~~a~~vimlaTmLHSIAtGNm--~Ps~v~~~cV 368 (407)
T TIGR00300 296 VMYECVKNNIPYVLAGSIRDDGPLPDVITDV-----VRAQSKMRELLQGADMVLMLSTMLHSIAVGNL--LPSGVKTICV 368 (407)
T ss_pred hHHHHHhCCCCEEEeeeccCCCCCCcchhhH-----HHHHHHHHHHhccCCeehhHHHHHHHHhhccc--ccccceEEEE
Confidence 445567789998653 33445555543211 11233445678899999999999877777653 3445689999
Q ss_pred cCCchhhccC----CCCcceEeccHHHHHHHHHHHhc
Q 048725 386 DIDSAEIGKN----KQPHVSVCADLKLALKGINRILG 418 (661)
Q Consensus 386 d~d~~~i~~~----~~~~~~i~~D~~~~L~~L~~~l~ 418 (661)
|++|....|- .--.++++.|+..||..|.+.|.
T Consensus 369 DInp~~VtKL~DRGs~qa~giVTdvg~Fl~~L~~~l~ 405 (407)
T TIGR00300 369 DINPAVVTKLSDRGSSQAVGVVTDVGLFLPLLVRQIK 405 (407)
T ss_pred ECCHHHhhhhhccCceeEEEEEecHHHHHHHHHHHHh
Confidence 9999987763 22357899999999999987764
No 324
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=76.00 E-value=17 Score=44.35 Aligned_cols=141 Identities=16% Similarity=0.086 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHHHh------CCCcEEEEcCCccc--hHHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCCcH
Q 048725 275 PSEVHLEQIVRLISE------SKKPVLYVGGGCLN--SSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTV 346 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~------AkrPvIv~G~g~~~--a~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g~~ 346 (661)
..+++++.+++.|++ .+...++.|.+... ......+|+..+|.+........+.....++...|.... +..
T Consensus 140 SWdEAld~IA~kl~~i~~~~Gp~si~~~~~~~~~~~~~~~~~~r~~~~lG~~~~~~~~~~~~~~~~~~~~~G~~~~-~~~ 218 (912)
T TIGR03479 140 SWDEALTEIADKIIDTFEAQGPDGISLDTPHPHMAPISFAAGSRFANLIGGVSPDIFDDYGDLYTGAFHTFGKAHD-SAT 218 (912)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCchhhHHHHHHHHHHHHcCCCccccccccCCCCCcccceeccCcc-CCc
Confidence 457788888877754 22323333444332 223456888888876432111111122222333332111 111
Q ss_pred HHHHhhhcCCEEEEeCCCCCCCcCCcc----cccCCCCeEEEEcCCchhhccCCCCcceEe--ccHHHHHHHHHHHhc
Q 048725 347 YANYAVDKSDLLLAFGVRFDDRVTGKL----EAFASRAKIVHIDIDSAEIGKNKQPHVSVC--ADLKLALKGINRILG 418 (661)
Q Consensus 347 ~a~~~l~~aDlvL~vG~~~~~~~t~~~----~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~--~D~~~~L~~L~~~l~ 418 (661)
..-+.+||+||++|+.........+ +.....+|+|.||++.....+.-...+.|. .|...+|..+...++
T Consensus 219 --~~D~~na~~Il~~G~Np~~t~~~~~~~l~~a~~~GaklVvIdPr~t~tA~~AD~wlpirPGTD~ALalam~~vIi~ 294 (912)
T TIGR03479 219 --SDDWFNADYIIMWGSNPSVTRIPDAHFLSEARYNGARVVSIAPDYNPSTIHADLWLPVRVGTDAALALGMVQVIID 294 (912)
T ss_pred --hhhhhcCcEEEEecCChHHcCCchHHHHHHHHhcCCeEEEECCCCChhhhhCCeecCCCCCcHHHHHHHHHHHHHH
Confidence 2236799999999998754322211 122356799999998877655333333333 566555555444544
No 325
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=75.55 E-value=13 Score=40.34 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHhCC--CcEEEEcCCcc-chHHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCCcHHHHHh
Q 048725 275 PSEVHLEQIVRLISESK--KPVLYVGGGCL-NSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYA 351 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~Ak--rPvIv~G~g~~-~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g~~~a~~~ 351 (661)
..+++++.+++.|++.+ ...++.|.... .....+++|++.+|.+-+.+.......+. .++.....+.. .. -
T Consensus 69 sWdeAl~~ia~~l~~~~~~si~~~~g~~~~~e~~~~~~~~~~~~gs~~~~~~~~~~~~~~----~~~~~~~~~~~-~~-d 142 (375)
T cd02773 69 TWEEALAAIAKALKGVKPDEIAAIAGDLADVESMVALKDLLNKLGSENLACEQDGPDLPA----DLRSNYLFNTT-IA-G 142 (375)
T ss_pred CHHHHHHHHHHHHhhcCcCcEEEEeCCCCCHHHHHHHHHHHHHhCCCccccccccccccc----ccccccccCCC-HH-H
Confidence 46888999999998765 45555554332 34456789999999876543322111111 01100001111 12 3
Q ss_pred hhcCCEEEEeCCCCCCCcC---Ccc-cccC-CCCeEEEEcCCch
Q 048725 352 VDKSDLLLAFGVRFDDRVT---GKL-EAFA-SRAKIVHIDIDSA 390 (661)
Q Consensus 352 l~~aDlvL~vG~~~~~~~t---~~~-~~~~-~~~~vi~Id~d~~ 390 (661)
++++|+||++|+.+.+... ... ..+. ..+++|.||....
T Consensus 143 i~~ad~il~~G~N~~~~~p~~~~~~~~~~~~~g~kli~idp~~~ 186 (375)
T cd02773 143 IEEADAVLLVGTNPRFEAPVLNARIRKAWLHGGLKVGVIGPPVD 186 (375)
T ss_pred HhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCEEEEEcCccc
Confidence 6899999999998743211 111 1222 3579999987554
No 326
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=75.23 E-value=3.9 Score=40.45 Aligned_cols=56 Identities=16% Similarity=0.252 Sum_probs=36.8
Q ss_pred HHHHhhhcCCEEEEeCCCCCCCcCCcccc--cCCCCeEEEEcCCchhhccCCCCcceEec
Q 048725 347 YANYAVDKSDLLLAFGVRFDDRVTGKLEA--FASRAKIVHIDIDSAEIGKNKQPHVSVCA 404 (661)
Q Consensus 347 ~a~~~l~~aDlvL~vG~~~~~~~t~~~~~--~~~~~~vi~Id~d~~~i~~~~~~~~~i~~ 404 (661)
.+.+.+++||++|++|+++.-.....+-. ...++++|.|+.++..... ..++.+.+
T Consensus 148 ~a~~~~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~~~~~d~--~~d~~~~~ 205 (206)
T cd01410 148 GAAAAACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQPTPKDK--LADLVIHG 205 (206)
T ss_pred HHHHHHhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCCCCCCCc--cccEEEeC
Confidence 44566789999999999986554333321 2346789999998876553 23444443
No 327
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=75.19 E-value=31 Score=36.77 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=29.8
Q ss_pred HHHHHhHc-CCCEeeeCCHHHHHHHHHHHHhCCCcEEE
Q 048725 592 MLKFAEAC-GIPGAQVTRKADLRAAIQTMLDTPGPYLL 628 (661)
Q Consensus 592 ~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lI 628 (661)
+..+.+++ |+......+..|++.+|+.+++.++|++|
T Consensus 133 ~ea~~r~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 170 (327)
T PRK09212 133 YAAWYSHIPGLKVVAPYFAADCKGLLKTAIRDPNPVIF 170 (327)
T ss_pred HHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCcEEE
Confidence 34555554 66777779999999999999998999988
No 328
>KOG2682 consensus NAD-dependent histone deacetylases and class I sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=75.18 E-value=7.6 Score=38.59 Aligned_cols=77 Identities=23% Similarity=0.347 Sum_probs=50.8
Q ss_pred hhcCCEEEEeCCCCCCCcCCccc-ccCCCCeEEEEcCCch--hhccCCCCcceEeccHHHHHHHHHHHhcCCCCCCCCCc
Q 048725 352 VDKSDLLLAFGVRFDDRVTGKLE-AFASRAKIVHIDIDSA--EIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDF 428 (661)
Q Consensus 352 l~~aDlvL~vG~~~~~~~t~~~~-~~~~~~~vi~Id~d~~--~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~ 428 (661)
...+|++|++|+.+--.....+. ..+...+-+.|+.+.. ..+...+.|+.+.+|.....++|.+.|.
T Consensus 210 ~~~~dl~lV~GTSL~V~PFAsLpe~vp~~v~RlLiNre~~Gp~~~~~r~rDv~~lgd~d~~~eaLvelLG---------- 279 (314)
T KOG2682|consen 210 FLKVDLLLVMGTSLQVQPFASLPEKVPLSVPRLLINREKAGPFLGMIRYRDVAWLGDCDQGVEALVELLG---------- 279 (314)
T ss_pred ccccceEEEeccceeeeecccchhhhhhcCceeEecccccCccccCcccccchhhccHHHHHHHHHHHhC----------
Confidence 34689999999998544444332 2223334444554443 2444456789999999999999999874
Q ss_pred HHHHHHHHHHHh
Q 048725 429 SAWREELDEQKV 440 (661)
Q Consensus 429 ~~w~~~l~~~~~ 440 (661)
|.+++++...
T Consensus 280 --W~eele~lv~ 289 (314)
T KOG2682|consen 280 --WKEELEDLVR 289 (314)
T ss_pred --cHHHHHHHHH
Confidence 7777766543
No 329
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=74.49 E-value=16 Score=35.87 Aligned_cols=102 Identities=16% Similarity=0.186 Sum_probs=63.0
Q ss_pred CcHHHHHHHHHHHCCCCEEEeccCCCcHHH--HHHHHc-----CCCCeEEccCChhHHHHHHH----HHH----H---Hh
Q 048725 88 RKGADILVEALERQGVTDVFAYPGGASMEI--HQALTR-----SNNIRNVLPRHEQGGIFAAE----GYA----R---SS 149 (661)
Q Consensus 88 ~~gad~lv~~L~~~GV~~vFg~PG~~~~~l--~~aL~~-----~~~i~~v~~~hE~~A~~~A~----Gya----r---~t 149 (661)
...++.|++.|.+.|-=.+||+-|+....- ...|.. +++++.+....+.. ..+|. ||. | ..
T Consensus 28 ~~a~~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~-~~ta~and~~~~~~f~~ql~~~ 106 (196)
T PRK10886 28 SRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNV-VLTAIANDRLHDEVYAKQVRAL 106 (196)
T ss_pred HHHHHHHHHHHHcCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHH-HHHHHhccccHHHHHHHHHHHc
Confidence 356788999999988889999988865432 322321 34566664433322 22222 222 1 22
Q ss_pred CCc-EEEEEccchh-hHHHHHHHHHhhhCCCcEEEEecCCCCc
Q 048725 150 GKP-GICIATSGPG-ATNLVSGLADALLDSVPLVAITGQVPRR 190 (661)
Q Consensus 150 g~~-gv~~~tsGpG-~~N~l~gl~~A~~~~iPll~ItG~~p~~ 190 (661)
.++ -++++-|+.| .-|++.++.-|...+.|+|.|||.....
T Consensus 107 ~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~ 149 (196)
T PRK10886 107 GHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGE 149 (196)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCh
Confidence 332 2444444444 6778899999999999999999976543
No 330
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=74.47 E-value=33 Score=33.56 Aligned_cols=101 Identities=23% Similarity=0.212 Sum_probs=52.9
Q ss_pred HHHHHHHHHHh---CCcEEEEEccchhhH---HHHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhccccc
Q 048725 139 IFAAEGYARSS---GKPGICIATSGPGAT---NLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKH 212 (661)
Q Consensus 139 ~~~A~Gyar~t---g~~gv~~~tsGpG~~---N~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~ 212 (661)
.-+|.|.|.+. ++...+++..|=|.. ...-++..|.....|+++|.=+......+. .+ +....++. .-|
T Consensus 81 l~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~---~~-~~~~~~~a-~G~ 155 (195)
T cd02007 81 ISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPN---VG-TPGNLFEE-LGF 155 (195)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCC---CC-CHHHHHHh-cCC
Confidence 34455555443 323334444566655 345677777777999999875433221110 01 34455553 233
Q ss_pred ccc-cCCcCcHHHHHHHHHHHhhcCCCceEEEEec
Q 048725 213 NYL-VLDVDDIPRIVREAFLLATSGRPGPVLIDVP 246 (661)
Q Consensus 213 ~~~-v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP 246 (661)
.+. ..+..++. .+.+|++.+... .||+.|++-
T Consensus 156 ~~~~~vdG~d~~-~l~~a~~~a~~~-~~P~~I~~~ 188 (195)
T cd02007 156 RYIGPVDGHNIE-ALIKVLKEVKDL-KGPVLLHVV 188 (195)
T ss_pred CccceECCCCHH-HHHHHHHHHHhC-CCCEEEEEE
Confidence 322 12444533 345666666654 489998874
No 331
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=73.36 E-value=15 Score=39.41 Aligned_cols=115 Identities=23% Similarity=0.187 Sum_probs=69.3
Q ss_pred EEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH---HHHHHHhhhCCCcEEEEecCCCCcccCCC-CCCCCC---
Q 048725 129 NVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNL---VSGLADALLDSVPLVAITGQVPRRMIGTD-AFQETP--- 201 (661)
Q Consensus 129 ~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~---l~gl~~A~~~~iPll~ItG~~p~~~~g~~-~~q~~~--- 201 (661)
.+....=--|+.+|.+......+..|+++..|=|++|- .-++-=|..-+.|+|+++=..... ++.. +.|...
T Consensus 136 ~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yA-iSvp~~~q~~~~~~ 214 (358)
T COG1071 136 GIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYA-ISVPRSRQTAAEII 214 (358)
T ss_pred ceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCce-eecchhhcccchhH
Confidence 34444445566666665444435558888889888774 566666778899999998543221 1211 112211
Q ss_pred -HHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEe
Q 048725 202 -IVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDV 245 (661)
Q Consensus 202 -~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~i 245 (661)
+....-.+.-..+.=.|+..+.+..++|...|+.+. ||+.|+.
T Consensus 215 ~~ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g~-GPtLIE~ 258 (358)
T COG1071 215 AARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGE-GPTLIEA 258 (358)
T ss_pred HhhhhccCCCeEEECCcCHHHHHHHHHHHHHHHHcCC-CCEEEEE
Confidence 111111122222222356678899999999999987 9999987
No 332
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=72.97 E-value=36 Score=36.22 Aligned_cols=38 Identities=5% Similarity=0.240 Sum_probs=28.8
Q ss_pred HHHHHhHc-CCCEeeeCCHHHHHHHHHHHHhCCCcEEEE
Q 048725 592 MLKFAEAC-GIPGAQVTRKADLRAAIQTMLDTPGPYLLD 629 (661)
Q Consensus 592 ~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lIe 629 (661)
++.+.+.+ |+..+...++.|++.+++.+++.++|++|-
T Consensus 133 ~ea~~~~iPgl~V~~Psd~~d~~~~l~~a~~~~~Pv~ir 171 (327)
T CHL00144 133 LESYFQSVPGLQIVACSTPYNAKGLLKSAIRSNNPVIFF 171 (327)
T ss_pred HHHHHhcCCCCEEEEeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 44444443 556666789999999999999989998874
No 333
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=72.63 E-value=29 Score=36.45 Aligned_cols=114 Identities=18% Similarity=0.121 Sum_probs=63.8
Q ss_pred CeEEccCChhHHHHHHHHHHHHh---CC--cEEEEEccchhhHHHHHHHHHhhhCCCcEEEEecCCCCcc----------
Q 048725 127 IRNVLPRHEQGGIFAAEGYARSS---GK--PGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRM---------- 191 (661)
Q Consensus 127 i~~v~~~hE~~A~~~A~Gyar~t---g~--~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~~---------- 191 (661)
+.++...+|.+++ +|.|.+++. ++ ..+|+.-=|-..-..++++..|...+.++++|.=|.....
T Consensus 64 ~~~~~~~fg~~~a-~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~~T 142 (299)
T PRK11865 64 VPWIHVAFENAAA-VASGIERAVKALGKKVNVVAIGGDGGTADIGFQSLSGAMERGHNILYLMYDNEAYMNTGIQRSGST 142 (299)
T ss_pred cccchhhhcchHH-HHHHHHHHHHHhcCCCeEEEEeCCchHhhccHHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCC
Confidence 5567777776655 455666553 33 4444443344444557899999999999999874332111
Q ss_pred ----------cCCC----CCCCCCHHHHhhcc-ccccc--ccCCcCcHHHHHHHHHHHhhcCCCceEEEEec
Q 048725 192 ----------IGTD----AFQETPIVEVTRSI-TKHNY--LVLDVDDIPRIVREAFLLATSGRPGPVLIDVP 246 (661)
Q Consensus 192 ----------~g~~----~~q~~~~~~~~~~i-tk~~~--~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP 246 (661)
.|+. .....|...+.... +.|.. .+.++.++.+.+++|.+ . .||.+|++-
T Consensus 143 p~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~----~-~Gps~I~v~ 209 (299)
T PRK11865 143 PFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKE----V-EGPAYIQVL 209 (299)
T ss_pred CCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh----C-CCCEEEEEE
Confidence 0110 12245555555333 22222 23455565555555554 3 499999884
No 334
>PRK05261 putative phosphoketolase; Provisional
Probab=72.56 E-value=42 Score=39.90 Aligned_cols=112 Identities=17% Similarity=0.056 Sum_probs=70.1
Q ss_pred eEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhh---------------hCCCcEEEEecCCCCccc
Q 048725 128 RNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSGLADAL---------------LDSVPLVAITGQVPRRMI 192 (661)
Q Consensus 128 ~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~gl~~A~---------------~~~iPll~ItG~~p~~~~ 192 (661)
+++....|..+..++.||+. +|+.+++ .|+. .+...+-.+.+++ ..++. +++|.+.=+...
T Consensus 451 rvie~LsEh~~~g~~~Gy~L-tG~~~~~-~sYe-aF~~ivd~m~~q~~kw~r~~~~~~wr~~~~sLn-~l~Ts~~~~qgh 526 (785)
T PRK05261 451 RVMEVLSEHLCEGWLEGYLL-TGRHGFF-SSYE-AFIHIVDSMFNQHAKWLKVAREIPWRKPIPSLN-YLLTSHVWRQDH 526 (785)
T ss_pred CeeeeecHHHHHHHHHHHHh-cCCCcce-ecHH-HHHHHHHHHHHHHHHHHHHHhhcccCCCCccee-EEeecceeecCC
Confidence 66778999999999999998 9998887 4665 5554455555555 33343 555554322211
Q ss_pred CCCCCCC---CCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 048725 193 GTDAFQE---TPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPK 247 (661)
Q Consensus 193 g~~~~q~---~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~ 247 (661)
..-.+|. +++....++ -..+|-.|.|..++ ..|++.|+..+.+|..|-+.+
T Consensus 527 NG~THQ~Pg~ie~l~~~r~---~~~rV~rPaDaNe~-laa~~~al~s~~~p~~IvlsR 580 (785)
T PRK05261 527 NGFSHQDPGFIDHVANKKP---DVIRVYLPPDANTL-LAVADHCLRSRNYINVIVAGK 580 (785)
T ss_pred CCCCCCCchHHHHHHhcCC---CcceEEeCCCHHHH-HHHHHHHHHhCCCCEEEEEeC
Confidence 2224677 555554444 23344455554443 447777776677899998875
No 335
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=72.05 E-value=19 Score=37.07 Aligned_cols=85 Identities=12% Similarity=0.148 Sum_probs=55.9
Q ss_pred cEEEEECCcccccC--hH-H-HHHHHHcCCCeEEEEEeCC--cchhHHHHHHHhhcccccccccCCCCCcccCCccHHHH
Q 048725 522 IIVDIDGDGSFIMN--VQ-E-LATIKVEKLPIKILLLNNQ--HLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKF 595 (661)
Q Consensus 522 ~vv~i~GDGsf~~~--~~-e-L~ta~~~~lpv~ivV~NN~--g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~ 595 (661)
+++.++-||.+.++ .. . +..+.+.++-+.+|+++|. +-+++.. +...| .++.. ..+..+
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~-~~~~~---------~~~~~-----~~l~~Y 230 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDI-KVVSF---------KNDKS-----GVITPY 230 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCcccc-ccccc---------CCCCc-----cHHHHH
Confidence 79999999996554 32 2 5567778999999999986 3333311 00111 11100 156678
Q ss_pred HhHcCCCEe-eeCCHHHHHHHHHHHHh
Q 048725 596 AEACGIPGA-QVTRKADLRAAIQTMLD 621 (661)
Q Consensus 596 A~a~G~~~~-~v~~~~el~~al~~a~~ 621 (661)
-+.|+++|+ .|.+.++|...|..++.
T Consensus 231 l~~fpfpYy~~~~~~~~lp~~l~~~lr 257 (266)
T cd01460 231 LDEFPFPYYVIVRDLNQLPSVLSDALR 257 (266)
T ss_pred HhcCCCCeEEEecChhHhHHHHHHHHH
Confidence 889999876 66899999887776653
No 336
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=72.03 E-value=9.8 Score=43.10 Aligned_cols=140 Identities=17% Similarity=0.168 Sum_probs=69.2
Q ss_pred CCHHHHHHHHHHHHhCC------CcEEEEcCCccch--HHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCCcH
Q 048725 275 PSEVHLEQIVRLISESK------KPVLYVGGGCLNS--SEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTV 346 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~Ak------rPvIv~G~g~~~a--~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g~~ 346 (661)
..+++++.+++.|++.+ ...++.+.+.... ......|+..+|.+-+....-.+..-..+....|... +.
T Consensus 74 sWdeAl~~ia~~l~~i~~~~G~~si~~~~~~g~~~~~~~~~~~~~~~~~Gs~~~~~~~c~~~~~~~~~~~~G~~~--~~- 150 (501)
T cd02766 74 SWDEALDTIAAKLKEIKAEYGPESILPYSYAGTMGLLQRAARGRFFHALGASELRGTICSGAGIEAQKYDFGASL--GN- 150 (501)
T ss_pred cHHHHHHHHHHHHHHHHHhhCCcEEEEecccCCccccchHHHHHHHHhCCCCCCCCCccHHHHHHHHHhhcCCCC--CC-
Confidence 46788888888887543 2333344443322 1223678887786653210000000000111122110 11
Q ss_pred HHHHhhhcCCEEEEeCCCCCCCcCCccc----ccCCCCeEEEEcCCchhhccCCCCcceE--eccHHHHHHHHHHHhc
Q 048725 347 YANYAVDKSDLLLAFGVRFDDRVTGKLE----AFASRAKIVHIDIDSAEIGKNKQPHVSV--CADLKLALKGINRILG 418 (661)
Q Consensus 347 ~a~~~l~~aDlvL~vG~~~~~~~t~~~~----~~~~~~~vi~Id~d~~~i~~~~~~~~~i--~~D~~~~L~~L~~~l~ 418 (661)
..+-+.++|+||++|+...+.....+. .....+|+|.||+......+.-...+.+ -.|...++..+...++
T Consensus 151 -~~~d~~~ad~il~~G~Np~~s~p~~~~~~~~a~~~GaklivvDPr~t~ta~~Ad~~l~i~PGtD~al~~al~~~ii~ 227 (501)
T cd02766 151 -DPEDMVNADLIVIWGINPAATNIHLMRIIQEARKRGAKVVVIDPYRTATAARADLHIQIRPGTDGALALGVAKVLFR 227 (501)
T ss_pred -CHHHHhcCCEEEEECCChhhhchhHHHHHHHHHHCCCEEEEECCCCCccHHHhCeeeccCCCcHHHHHHHHHHHHHH
Confidence 123478999999999987543222111 1235679999998776655432222322 2555555544444443
No 337
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=71.88 E-value=3.6 Score=44.29 Aligned_cols=116 Identities=20% Similarity=0.253 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHhCC-----CcEEEE-cCCcc-chHHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCC-cccCCCCcH
Q 048725 275 PSEVHLEQIVRLISESK-----KPVLYV-GGGCL-NSSEELRKFVELTGIPVASTLMGLGSFPGTDELSL-QMLGMHGTV 346 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~Ak-----rPvIv~-G~g~~-~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~l-g~~G~~g~~ 346 (661)
..+++++.+++.|++.+ +.+.+. |.+.. .....+.+|...+|.+.+.........+....+.. + .+..+..
T Consensus 72 sWdeAl~~ia~~l~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 150 (374)
T cd00368 72 SWDEALDEIAEKLKEIREKYGPDAIAFYGGGGASNEEAYLLQKLLRALGSNNVDSHARLCHASAVAALKAFG-GGAPTNT 150 (374)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHHhcCCCccCCCCcccHHHHHHHHHHhC-CCCCCCC
Confidence 35778888888887653 455544 44433 23344566888888776543322111111000000 1 1111111
Q ss_pred HHHHhhhcCCEEEEeCCCCCCCcCCc---c-cccCCCCeEEEEcCCchhhc
Q 048725 347 YANYAVDKSDLLLAFGVRFDDRVTGK---L-EAFASRAKIVHIDIDSAEIG 393 (661)
Q Consensus 347 ~a~~~l~~aDlvL~vG~~~~~~~t~~---~-~~~~~~~~vi~Id~d~~~i~ 393 (661)
..-++++|+||.+|+.+....... + +......++|.||......+
T Consensus 151 --~~d~~~ad~il~~G~n~~~~~~~~~~~~~~a~~~g~kvv~idp~~s~t~ 199 (374)
T cd00368 151 --LADIENADLILLWGSNPAETHPVLAARLRRAKKRGAKLIVIDPRRTETA 199 (374)
T ss_pred --HHHHhhCCEEEEEcCChHHhChHHHHHHHHHHHCCCeEEEEcCCCCcch
Confidence 223669999999999874332211 1 12235679999998776543
No 338
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=70.37 E-value=12 Score=42.34 Aligned_cols=117 Identities=15% Similarity=0.196 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHhC------CCcEEEEcCCcc-chHHHHHHHHHHhCC-CeeecCCCCCCCCCCC--CCCCcccCCCC
Q 048725 275 PSEVHLEQIVRLISES------KKPVLYVGGGCL-NSSEELRKFVELTGI-PVASTLMGLGSFPGTD--ELSLQMLGMHG 344 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~A------krPvIv~G~g~~-~a~~~l~~lae~lg~-PV~tt~~gkg~~p~~h--pl~lg~~G~~g 344 (661)
..+++++.+++.|++. ++..++.|.+.. .....+.+|++..+. +.+.........+... ...+|. +..+
T Consensus 70 sWdeAl~~ia~~l~~~~~~~g~~~v~~~~~~~~~~e~~~~~~~~~~~~g~s~~~~~~~~~c~~~~~~~~~~~~G~-~~~~ 148 (512)
T cd02753 70 SWDEALSLVASRLKEIKDKYGPDAIAFFGSAKCTNEENYLFQKLARAVGGTNNVDHCARLCHSPTVAGLAETLGS-GAMT 148 (512)
T ss_pred cHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCcHHHHHHHHHHHHhcCCCccCCCcccccchhhHHHHhhcCC-CCCC
Confidence 3578888888888753 456666665543 233567788887765 3322111000000000 011111 0111
Q ss_pred cHHHHHhhhcCCEEEEeCCCCCCCcCC---cc-cccCCCCeEEEEcCCchhhcc
Q 048725 345 TVYANYAVDKSDLLLAFGVRFDDRVTG---KL-EAFASRAKIVHIDIDSAEIGK 394 (661)
Q Consensus 345 ~~~a~~~l~~aDlvL~vG~~~~~~~t~---~~-~~~~~~~~vi~Id~d~~~i~~ 394 (661)
.. .+-++++|+||++|+.+...... .+ +......++|.||+.......
T Consensus 149 ~~--~~d~~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~k~i~Idp~~s~ta~ 200 (512)
T cd02753 149 NS--IADIEEADVILVIGSNTTEAHPVIARRIKRAKRNGAKLIVADPRRTELAR 200 (512)
T ss_pred CC--HHHHHhCCEEEEECCChhhhhHHHHHHHHHHHHCCCeEEEEcCCCccchH
Confidence 11 23467999999999987433211 11 112346799999987765543
No 339
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=70.26 E-value=13 Score=48.29 Aligned_cols=104 Identities=11% Similarity=0.110 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhh--CCCcEEEEecCCCCc-ccCC----------------CCCCC
Q 048725 139 IFAAEGYARSSGKPGICIATSGPGATNLVSGLADALL--DSVPLVAITGQVPRR-MIGT----------------DAFQE 199 (661)
Q Consensus 139 ~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~gl~~A~~--~~iPll~ItG~~p~~-~~g~----------------~~~q~ 199 (661)
.-+|.|++.+.+|+.+|+ +.--|+..-++.|..|.. .++||++|.-..... .+.. ...+.
T Consensus 767 lpaAIGaala~~r~Vv~i-~GDGsF~m~~~EL~Ta~r~~~~lpi~iVV~NN~gggi~~~l~~~~~~~~~~~~~~~~~~~~ 845 (1655)
T PLN02980 767 LSTAIGFAVGCNKRVLCV-VGDISFLHDTNGLSILSQRIARKPMTILVINNHGGAIFSLLPIAKRTEPRVLNQYFYTSHD 845 (1655)
T ss_pred HHHHHHHhhcCCCCEEEE-EehHHHHhhhhHHHHhhcccCCCCEEEEEEeCCCcHhhhcCccCCCCcchhHHHHhcCCCC
Confidence 557888887778888886 444467777889999877 489998887544321 0100 00123
Q ss_pred CCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 200 TPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 200 ~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
.|...+.+.+--...+|.+++++...+++|+. ..||..|++..|
T Consensus 846 ~df~~lA~a~G~~~~rV~~~~eL~~aL~~a~~-----~~~p~lIEV~t~ 889 (1655)
T PLN02980 846 ISIENLCLAHGVRHLHVGTKSELEDALFTSQV-----EQMDCVVEVESS 889 (1655)
T ss_pred CCHHHHHHHcCCceeecCCHHHHHHHHHHhhc-----cCCCEEEEEecC
Confidence 45666666666666778888888777776663 258999999986
No 340
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=70.11 E-value=3.6 Score=41.37 Aligned_cols=47 Identities=23% Similarity=0.369 Sum_probs=32.3
Q ss_pred HHHhhhcCCEEEEeCCCCCCCcCCcccccC-CCCeEEEEcCCchhhcc
Q 048725 348 ANYAVDKSDLLLAFGVRFDDRVTGKLEAFA-SRAKIVHIDIDSAEIGK 394 (661)
Q Consensus 348 a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~-~~~~vi~Id~d~~~i~~ 394 (661)
+.+.++++|++|++|+.+.-.....+-... .++++|.|+.++..+..
T Consensus 165 ~~~~~~~~DlllviGTSl~v~p~~~l~~~~~~~~~~i~iN~~~~~~~~ 212 (225)
T cd01411 165 AIQAIEKADLLVIVGTSFVVYPFAGLIDYRQAGANLIAINKEPTQLDS 212 (225)
T ss_pred HHHHHhcCCEEEEECcCCeehhHHHHHHHHhCCCeEEEECCCCCCCCc
Confidence 456678999999999987543332222222 47889999998876654
No 341
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=69.86 E-value=22 Score=42.40 Aligned_cols=114 Identities=18% Similarity=0.196 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHhC--CCcEEEEcCCcc-chHHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCC-CcHHHHH
Q 048725 275 PSEVHLEQIVRLISES--KKPVLYVGGGCL-NSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMH-GTVYANY 350 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~A--krPvIv~G~g~~-~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~-g~~~a~~ 350 (661)
..+++++.+++.|++. +...++.++... ...-....|++.+|.+-+.........+....+ .-.+|.. ++... +
T Consensus 117 SWdEAl~~IA~kL~~~~p~~i~~y~sg~~s~e~~~~~~~f~r~lGt~n~~~~s~~C~~~~~~al-~~~~G~~~~t~~~-~ 194 (743)
T TIGR01701 117 SWDDAYQEIAAKLNSLDPKQVAFYTSGRTSNEAAYLYQLFARSLGSNNLPDCSNMCHEPSSVAL-KRSIGIGKGSVNL-E 194 (743)
T ss_pred cHHHHHHHHHHHHHhcCCCeEEEEecCCcchHHHHHHHHHHHHhCCCCcCCCcccccchhhHHH-HHhcCCCCCCCCH-h
Confidence 4678888888888775 444555554433 233456788888887654321111100000000 0012211 11112 2
Q ss_pred hhhcCCEEEEeCCCCCCCcCCccc----ccCCCCeEEEEcCCch
Q 048725 351 AVDKSDLLLAFGVRFDDRVTGKLE----AFASRAKIVHIDIDSA 390 (661)
Q Consensus 351 ~l~~aDlvL~vG~~~~~~~t~~~~----~~~~~~~vi~Id~d~~ 390 (661)
-++++|+||++|..........+. .....+|+|.||+..+
T Consensus 195 Di~~ad~Il~~G~Np~~~~p~~~~~l~~a~~rGakiIvIdP~~~ 238 (743)
T TIGR01701 195 DFEHTDCLVFIGSNAGTNHPRMLKYLYAAKKRGAKIIAINPLRE 238 (743)
T ss_pred HHHhCCEEEEEecCcccccHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 367899999999997544322111 2235679999998553
No 342
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=69.68 E-value=19 Score=38.89 Aligned_cols=112 Identities=20% Similarity=0.153 Sum_probs=61.3
Q ss_pred EccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH---HHHHHHHhhhCCCcEEEEecCCCCcccCCC-CCCCCCHHHH
Q 048725 130 VLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATN---LVSGLADALLDSVPLVAITGQVPRRMIGTD-AFQETPIVEV 205 (661)
Q Consensus 130 v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N---~l~gl~~A~~~~iPll~ItG~~p~~~~g~~-~~q~~~~~~~ 205 (661)
+...+=-.|+.+|.+.- ..|+..++++..|=|++| ..-++.-|..-+.|+|+|+-+.. ..+++. ..|. ....+
T Consensus 139 ~vG~~~p~A~G~A~A~k-~~~~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lPvvfvveNN~-~aist~~~~~~-~~~~~ 215 (362)
T PLN02269 139 IVGAQVPLGAGLAFAQK-YNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCENNH-YGMGTAEWRAA-KSPAY 215 (362)
T ss_pred hhhccccHHHHHHHHHH-HhCCCCeEEEEECCCCcccCHHHHHHHHhhccCcCEEEEEeCCC-EeccCchhhhc-cchHH
Confidence 33344445566666643 345566777777766555 45566667778999999885432 112221 0010 00111
Q ss_pred hhc-cccccccc--CCcCcHHHHHHHHHHHhhcCCCceEEEEec
Q 048725 206 TRS-ITKHNYLV--LDVDDIPRIVREAFLLATSGRPGPVLIDVP 246 (661)
Q Consensus 206 ~~~-itk~~~~v--~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP 246 (661)
++. ..--..+| .++..+.+.+.+|++.+.+ .||+.|++-
T Consensus 216 ~~~~~~~p~~~VDG~D~~av~~a~~~A~~~aR~--~gP~lIe~~ 257 (362)
T PLN02269 216 YKRGDYVPGLKVDGMDVLAVKQACKFAKEHALS--NGPIVLEMD 257 (362)
T ss_pred HHhhcCCCeEEECCCCHHHHHHHHHHHHHHHHh--CCCEEEEEe
Confidence 110 00001223 3566777888888888877 489999973
No 343
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=69.12 E-value=54 Score=39.60 Aligned_cols=119 Identities=13% Similarity=0.008 Sum_probs=78.6
Q ss_pred EccCChhHHHH--HHHHHHHHh-CCcEEEE-Eccchh-hHHHHHHHHHhhhCCCcEEEEecCCCCcccCCC--CCCCCCH
Q 048725 130 VLPRHEQGGIF--AAEGYARSS-GKPGICI-ATSGPG-ATNLVSGLADALLDSVPLVAITGQVPRRMIGTD--AFQETPI 202 (661)
Q Consensus 130 v~~~hE~~A~~--~A~Gyar~t-g~~gv~~-~tsGpG-~~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~~--~~q~~~~ 202 (661)
-.-..|++++. +|.|-+..+ |++.+.+ ++..+= +.=+.--+-.+-..+.++.+|.+.......+.+ .+|.+..
T Consensus 564 e~GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~tya~F~~~Ra~Dqir~a~~~~a~v~lvG~~aG~tTlg~eG~tHq~~eD 643 (889)
T TIGR03186 564 EEGISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFGFQRIGDLIWAAADQRARGFLIGATSGKTTLGGEGLQHQDGTS 643 (889)
T ss_pred EechhhHHHHHHHHHHHHhhhhcCCCceEEEEehHHhHhhhHHHHHHHHhhcCCCcEEEEECCCccCCCCCcccccchHh
Confidence 34489999887 888877663 5543333 455553 345555666666777888877766655223332 3566666
Q ss_pred HHHhhcccccc-cccCCcCcHHHHHHHHHHHhhcC-CCceEEEEeccc
Q 048725 203 VEVTRSITKHN-YLVLDVDDIPRIVREAFLLATSG-RPGPVLIDVPKD 248 (661)
Q Consensus 203 ~~~~~~itk~~-~~v~~~~~i~~~i~~A~~~a~s~-~~GPV~I~iP~d 248 (661)
..+++.+.... +.+.+..++..+++.+++.+... ..||+||.+...
T Consensus 644 ial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl~r~ 691 (889)
T TIGR03186 644 HLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTVTNE 691 (889)
T ss_pred HHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 77888875543 35677888999999988855544 469999999765
No 344
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=69.11 E-value=31 Score=33.69 Aligned_cols=100 Identities=13% Similarity=0.209 Sum_probs=61.3
Q ss_pred CcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHH--HH-----cCCCCeEEccCChhHHH-----------HHHHHHHHHh
Q 048725 88 RKGADILVEALERQGVTDVFAYPGGASMEIHQA--LT-----RSNNIRNVLPRHEQGGI-----------FAAEGYARSS 149 (661)
Q Consensus 88 ~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~a--L~-----~~~~i~~v~~~hE~~A~-----------~~A~Gyar~t 149 (661)
.+.++.|.+.|.+.|-=++||+-++......-+ |. ...++..+.. .+.+.. .++.-.+..-
T Consensus 31 ~~a~~~i~~al~~~~rI~i~G~G~S~~~A~~~a~~l~~~~~~~r~g~~~~~~-~d~~~~~~~~~d~~~~~~~~~~~~~~~ 109 (192)
T PRK00414 31 QRAAVLIADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAI-SDVSHLSCVSNDFGYDYVFSRYVEAVG 109 (192)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhcccccCCCCCceEEec-CcHHHHhhhhccCCHHHHHHHHHHHhC
Confidence 356788888888889999999988765433332 21 1134554444 332211 1122222122
Q ss_pred CCcEEEEEccchh-hHHHHHHHHHhhhCCCcEEEEecCCC
Q 048725 150 GKPGICIATSGPG-ATNLVSGLADALLDSVPLVAITGQVP 188 (661)
Q Consensus 150 g~~gv~~~tsGpG-~~N~l~gl~~A~~~~iPll~ItG~~p 188 (661)
.+--++++-|..| ..+.+.++..|...++|+|.||+...
T Consensus 110 ~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~ 149 (192)
T PRK00414 110 REGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDG 149 (192)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 2223555556665 66778888899999999999998654
No 345
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=69.08 E-value=14 Score=40.66 Aligned_cols=112 Identities=18% Similarity=0.114 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHHhCCC-----cEE-EEcCCc-cchHHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCCcHH
Q 048725 275 PSEVHLEQIVRLISESKK-----PVL-YVGGGC-LNSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVY 347 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~Akr-----PvI-v~G~g~-~~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g~~~ 347 (661)
..+++++.+++.|++.++ -+. +.|... ......+.+|++.+|.|.++.......+ .+.......+..+..
T Consensus 70 sWdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~- 146 (414)
T cd02772 70 DWETALEYVAEGLSAIIKKHGADQIGALASPHSTLEELYLLQKLARGLGSDNIDHRLRQSDF--RDDAKASGAPWLGMP- 146 (414)
T ss_pred cHHHHHHHHHHHHHHHHHhcCcceEEEEecCCCCcHHHHHHHHHHHHhCCCCccCccccCcc--chhhhhccCCCCCCc-
Confidence 467888888888876422 233 344332 2345678899999998876432111111 000000001111221
Q ss_pred HHHhhhcCCEEEEeCCCCCCCcCCc---cc-ccCCCCeEEEEcCCch
Q 048725 348 ANYAVDKSDLLLAFGVRFDDRVTGK---LE-AFASRAKIVHIDIDSA 390 (661)
Q Consensus 348 a~~~l~~aDlvL~vG~~~~~~~t~~---~~-~~~~~~~vi~Id~d~~ 390 (661)
.+-++++|+||++|+.+.+..... +. ....+.++|.||.-..
T Consensus 147 -~~di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~g~k~i~idp~~~ 192 (414)
T cd02772 147 -IAEISELDRVLVIGSNLRKEHPLLAQRLRQAVKKGAKLSAINPADD 192 (414)
T ss_pred -HHHHHhCCEEEEECCCccccchHHHHHHHHHHHcCCEEEEEeCccc
Confidence 234788999999999874332111 11 2234678999998544
No 346
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=68.98 E-value=5.3 Score=39.87 Aligned_cols=56 Identities=21% Similarity=0.297 Sum_probs=36.2
Q ss_pred HHHHhhhcCCEEEEeCCCCCCCcCCcccc-c-CCCCeEEEEcCCchhhccCCCCcceEec
Q 048725 347 YANYAVDKSDLLLAFGVRFDDRVTGKLEA-F-ASRAKIVHIDIDSAEIGKNKQPHVSVCA 404 (661)
Q Consensus 347 ~a~~~l~~aDlvL~vG~~~~~~~t~~~~~-~-~~~~~vi~Id~d~~~i~~~~~~~~~i~~ 404 (661)
.+.+.++++|++|++|+.+.-.....+-. . ..++++|.|+.++.... ...++.+.+
T Consensus 160 ~a~~~~~~~Dl~lvlGTSl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~--~~~d~~~~~ 217 (218)
T cd01407 160 EAAEALAKADLLLVIGTSLQVYPAAGLPLYAPERGAPVVIINLEPTPAD--RKADLVILG 217 (218)
T ss_pred HHHHHHhcCCEEEEeCCCcccccHHHHHHHHHHCCCeEEEECCCCCCCC--ccceEEEeC
Confidence 34456778999999999986443333321 2 24678999999887654 234555544
No 347
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=68.93 E-value=8.7 Score=41.66 Aligned_cols=41 Identities=15% Similarity=0.159 Sum_probs=22.3
Q ss_pred ccHHHHHhHcC----CCEeee----------CCHHHHHHHHHHHHhCCCcEEEEEEeC
Q 048725 590 PNMLKFAEACG----IPGAQV----------TRKADLRAAIQTMLDTPGPYLLDVIFP 633 (661)
Q Consensus 590 ~d~~~~A~a~G----~~~~~v----------~~~~el~~al~~a~~~~gp~lIeV~~~ 633 (661)
+|.+.+.+++. ++.+.+ ...+++.+++++ .+.-.++|.+..
T Consensus 117 v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~---~g~l~iVDaVsS 171 (383)
T COG0075 117 VDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAAKE---HGALLIVDAVSS 171 (383)
T ss_pred CCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHHHHHHHHH---cCCEEEEEeccc
Confidence 46666666665 333322 234444444443 466777887776
No 348
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=67.39 E-value=14 Score=39.47 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=28.3
Q ss_pred HHHhhhcCCEEEEeCCCCCCCcCCcccc-cCCCCeEEEEcCCch
Q 048725 348 ANYAVDKSDLLLAFGVRFDDRVTGKLEA-FASRAKIVHIDIDSA 390 (661)
Q Consensus 348 a~~~l~~aDlvL~vG~~~~~~~t~~~~~-~~~~~~vi~Id~d~~ 390 (661)
+.+.+++||++|+||+.+.-.....+.. ....+.+|.|+.++.
T Consensus 199 a~~~~~~aDllLVIGTSL~V~Paa~l~~~a~~~~pvviIN~e~~ 242 (349)
T PTZ00410 199 VHHDIPEAELLLIIGTSLQVHPFALLACVVPKDVPRVLFNLERV 242 (349)
T ss_pred HHHHHHhCCEEEEECcCCcccCHHHHHHHHhcCCCEEEECcccc
Confidence 4556789999999999986544333321 124567777777654
No 349
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=67.21 E-value=54 Score=34.44 Aligned_cols=113 Identities=12% Similarity=0.054 Sum_probs=60.2
Q ss_pred CeEEccCChhHHHHHHHHHHHHh-----CCcEEEEEccchhhH--HHHHHHHHhhhCCCcEEEEecCCC---------Cc
Q 048725 127 IRNVLPRHEQGGIFAAEGYARSS-----GKPGICIATSGPGAT--NLVSGLADALLDSVPLVAITGQVP---------RR 190 (661)
Q Consensus 127 i~~v~~~hE~~A~~~A~Gyar~t-----g~~gv~~~tsGpG~~--N~l~gl~~A~~~~iPll~ItG~~p---------~~ 190 (661)
+.++...++.+++ +|.|.+++- ++..|| +..|=|.+ ..+.++..|...+.|+++|.=+.. +.
T Consensus 64 ~~~i~~~~G~~~~-~A~G~a~A~~~~~~~~~~Vv-a~~GDG~~~~~g~~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~ 141 (300)
T PRK11864 64 VPVLHTAFAATAA-VASGIEEALKARGEKGVIVV-GWAGDGGTADIGFQALSGAAERNHDILYIMYDNEAYMNTGIQRSS 141 (300)
T ss_pred ccceeehhhChHH-HHHHHHHHHHhhCCCCcEEE-EEEccCccccccHHHHHHHHHhCcCEEEEEECCeeeecCCCCCCC
Confidence 5566777776544 344555543 223333 24444433 335899999999999999974332 11
Q ss_pred ccCCC----------CCCCCCHHHHhhcc-cccccc--cCCcCcHHHHHHHHHHHhhcCCCceEEEEec
Q 048725 191 MIGTD----------AFQETPIVEVTRSI-TKHNYL--VLDVDDIPRIVREAFLLATSGRPGPVLIDVP 246 (661)
Q Consensus 191 ~~g~~----------~~q~~~~~~~~~~i-tk~~~~--v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP 246 (661)
....+ .....|...+...+ ..|..+ +.++.++.+.+++|+ .. +||.+|.+-
T Consensus 142 ~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~----~~-~Gps~I~~~ 205 (300)
T PRK11864 142 STPYGAWTTTTPGGKREHKKPVPDIMAAHKVPYVATASIAYPEDFIRKLKKAK----EI-RGFKFIHLL 205 (300)
T ss_pred CCcCCCccccCCCCCcCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHH----hC-CCCEEEEEe
Confidence 11111 12335656655543 223322 234445555555554 43 599999883
No 350
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=66.75 E-value=19 Score=32.96 Aligned_cols=95 Identities=27% Similarity=0.401 Sum_probs=53.3
Q ss_pred cHHHHHHHHHHHCCCCEEEeccCCCcH--HHHHHHHcC---C--CCeEEccCChhH--HHHH----HHHHHHH-----hC
Q 048725 89 KGADILVEALERQGVTDVFAYPGGASM--EIHQALTRS---N--NIRNVLPRHEQG--GIFA----AEGYARS-----SG 150 (661)
Q Consensus 89 ~gad~lv~~L~~~GV~~vFg~PG~~~~--~l~~aL~~~---~--~i~~v~~~hE~~--A~~~----A~Gyar~-----tg 150 (661)
..++.+++.+++-|.=++||.-|+... ++...+... . .+..+ +.+... +... -.+|++. ..
T Consensus 23 ~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (138)
T PF13580_consen 23 KAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAI-ALNDDALTAISNDLEYDEGFARQLLALYDI 101 (138)
T ss_dssp HHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEE-ETTSTHHHHHHHHTTGGGTHHHHHHHHTT-
T ss_pred HHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCccccccc-ccccchHhhhhcccchhhHHHHHHHHHcCC
Confidence 478999999999999999999777443 232223221 1 12223 333322 1111 1233332 23
Q ss_pred Cc---EEEEEccchhhHHHHHHHHHhhhCCCcEEEEec
Q 048725 151 KP---GICIATSGPGATNLVSGLADALLDSVPLVAITG 185 (661)
Q Consensus 151 ~~---gv~~~tsGpG~~N~l~gl~~A~~~~iPll~ItG 185 (661)
+| .+++.+|| ...|.+.++..|..-+..+|.|||
T Consensus 102 ~~gDvli~iS~SG-~s~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 102 RPGDVLIVISNSG-NSPNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp -TT-EEEEEESSS--SHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CCCCEEEEECCCC-CCHHHHHHHHHHHHCCCEEEEEeC
Confidence 43 34444444 467889999999999999999996
No 351
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=65.81 E-value=13 Score=41.52 Aligned_cols=115 Identities=20% Similarity=0.256 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHHHhCC-----CcEEEEcCCccchHHHHHHHHHHhCCCeeecCCCCCCCCCC--CCCCCcccCCCCcHH
Q 048725 275 PSEVHLEQIVRLISESK-----KPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLGSFPGT--DELSLQMLGMHGTVY 347 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~Ak-----rPvIv~G~g~~~a~~~l~~lae~lg~PV~tt~~gkg~~p~~--hpl~lg~~G~~g~~~ 347 (661)
..+++++.+++.|++.+ +-+++.|+... ....+.+|+..+|.+-+.+......-+.. .....|..+ ..
T Consensus 75 SWdeAl~~ia~~l~~~~~~~G~~~i~~~~~~~~-~~~~~~~~~~~lGt~n~~~~~~~c~~~~~~~~~~~~g~~~---~~- 149 (454)
T cd02755 75 SWDEALQYIASKLKEIKEQHGPESVLFGGHGGC-YSPFFKHFAAAFGSPNIFSHESTCLASKNLAWKLVIDSFG---GE- 149 (454)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCcEEEEEecCCc-ccHHHHHHHHHhCCCCCCCccccchhHHHHHHHHHhhccC---CC-
Confidence 35778888888877542 22444443322 34456888888887643221110000000 000011111 11
Q ss_pred HHHhhhcCCEEEEeCCCCCCCcCC-cc----cccCCCCeEEEEcCCchhhcc
Q 048725 348 ANYAVDKSDLLLAFGVRFDDRVTG-KL----EAFASRAKIVHIDIDSAEIGK 394 (661)
Q Consensus 348 a~~~l~~aDlvL~vG~~~~~~~t~-~~----~~~~~~~~vi~Id~d~~~i~~ 394 (661)
..+-+.+||+||++|+.+.+.... .. +...+..++|.||+......+
T Consensus 150 ~~~d~~~ad~il~~G~n~~~~~~~~~~~~~~~a~~~g~kiivIdPr~t~ta~ 201 (454)
T cd02755 150 VNPDFENARYIILFGRNLAEAIIVVDARRLMKALENGAKVVVVDPRFSELAS 201 (454)
T ss_pred CCcchhcCCEEEEECcCcccccccHHHHHHHHHHHCCCeEEEECCCCChhhH
Confidence 122467999999999986443211 11 112346799999988766554
No 352
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=65.68 E-value=6.1 Score=39.59 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=32.5
Q ss_pred HHHHhhhcCCEEEEeCCCCCCCcCCccccc--CCCCeEEEEcCCchhhc
Q 048725 347 YANYAVDKSDLLLAFGVRFDDRVTGKLEAF--ASRAKIVHIDIDSAEIG 393 (661)
Q Consensus 347 ~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~--~~~~~vi~Id~d~~~i~ 393 (661)
.+.+.+++||++|++|+++.-.....+-.. ...+++|.|+.++....
T Consensus 164 ~a~~~~~~~Dl~lvvGTSl~V~p~~~l~~~a~~~g~~~i~iN~~~~~~~ 212 (222)
T cd01413 164 EAIEAAKEADLFIVLGSSLVVYPANLLPLIAKENGAKLVIVNADETPFD 212 (222)
T ss_pred HHHHHHhcCCEEEEEccCCEeccHhHHHHHHHHcCCeEEEEcCCCCCCC
Confidence 345667899999999999864443333222 24578999999886544
No 353
>PRK13936 phosphoheptose isomerase; Provisional
Probab=65.54 E-value=35 Score=33.36 Aligned_cols=100 Identities=19% Similarity=0.276 Sum_probs=58.9
Q ss_pred cHHHHHHHHHHHCCCCEEEeccCCCcHH--HHHHHHc-----CCCCeEEccCChhHH----------HHHHHHHHHHhCC
Q 048725 89 KGADILVEALERQGVTDVFAYPGGASME--IHQALTR-----SNNIRNVLPRHEQGG----------IFAAEGYARSSGK 151 (661)
Q Consensus 89 ~gad~lv~~L~~~GV~~vFg~PG~~~~~--l~~aL~~-----~~~i~~v~~~hE~~A----------~~~A~Gyar~tg~ 151 (661)
..++.+++.|.+.|.=++||+-++.... +...|.. ..+++.+....+... ..+....-....+
T Consensus 31 ~a~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~r~~~~r~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~ 110 (197)
T PRK13936 31 QAVELMVQALLNEGKILACGNGGSAADAQHFSAELLNRFERERPSLPAIALTTDTSTLTAIANDYSYNEVFSKQVRALGQ 110 (197)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHccCccCCCCccceeEecCCcHHHHHHHhhcCCHHHHHHHHHHHhCC
Confidence 4678899999999999999998876533 3333331 234555443222221 1111111112222
Q ss_pred c-EEEEEccchh-hHHHHHHHHHhhhCCCcEEEEecCCC
Q 048725 152 P-GICIATSGPG-ATNLVSGLADALLDSVPLVAITGQVP 188 (661)
Q Consensus 152 ~-gv~~~tsGpG-~~N~l~gl~~A~~~~iPll~ItG~~p 188 (661)
+ -+++.-|..| ..+.+..+..|...+.|+|.||+...
T Consensus 111 ~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~ 149 (197)
T PRK13936 111 PGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDG 149 (197)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 2 2333344444 55678888999999999999998654
No 354
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=64.29 E-value=21 Score=42.15 Aligned_cols=109 Identities=13% Similarity=0.076 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHhC--CCcEEEEcCCcc-chHHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCCcHHHHHh
Q 048725 275 PSEVHLEQIVRLISES--KKPVLYVGGGCL-NSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYA 351 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~A--krPvIv~G~g~~-~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g~~~a~~~ 351 (661)
..+++++.+++.|++. ++..+++|.... .....+++|++.+|.+.+.+...-..+. +...+.+. .+.. . +-
T Consensus 288 SWdEAl~~iA~kL~~~~~~~ia~i~g~~~~~E~~~~lkkl~~~lGs~nid~~~~~~~~~---~~~~~~~~-~~~s-i-~d 361 (687)
T PRK09130 288 SWDEAFAAIAAKIKGTPGEKIAAIAGDLADVESMFALKDLMQKLGSSNLDCRQDGAKLD---PSLRASYL-FNTT-I-AG 361 (687)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCCCCHHHHHHHHHHHHHcCCCccccccchhhhh---hhhhccCC-CCCC-H-HH
Confidence 4678888888888875 456777776654 4556789999999988765432100110 00011111 1111 1 23
Q ss_pred hhcCCEEEEeCCCCCCCcCC---cc-cccCCC-CeEEEEcCCc
Q 048725 352 VDKSDLLLAFGVRFDDRVTG---KL-EAFASR-AKIVHIDIDS 389 (661)
Q Consensus 352 l~~aDlvL~vG~~~~~~~t~---~~-~~~~~~-~~vi~Id~d~ 389 (661)
++++|+||++|+.+.+.... .+ +.+..+ .+++.||...
T Consensus 362 Ie~AD~IlliG~Np~~eaPvl~~rirka~~~g~~kIivIdpr~ 404 (687)
T PRK09130 362 IEEADAILLIGANPRFEAPVLNARIRKRWRAGGFKIAVIGEQA 404 (687)
T ss_pred HHhCCEEEEEccCcccccHHHHHHHHHHHHcCCCeEEEEcCcc
Confidence 68999999999987432211 11 233334 4899998764
No 355
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=64.06 E-value=35 Score=32.90 Aligned_cols=70 Identities=13% Similarity=0.086 Sum_probs=48.4
Q ss_pred CCcEEEEECCccccc--ChHHH-HHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHH
Q 048725 520 DAIIVDIDGDGSFIM--NVQEL-ATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFA 596 (661)
Q Consensus 520 ~~~vv~i~GDGsf~~--~~~eL-~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A 596 (661)
.++++++.+||+-.- ...++ ..+.+.++.+.+|=+.++. .=+.++|
T Consensus 107 ~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~IgiG~~~-------------------------------~~L~~ia 155 (183)
T cd01453 107 SREVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGLSAEM-------------------------------HICKEIC 155 (183)
T ss_pred ceEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEechHH-------------------------------HHHHHHH
Confidence 356888888887543 23343 3455667776666553210 0266799
Q ss_pred hHcCCCEeeeCCHHHHHHHHHHHH
Q 048725 597 EACGIPGAQVTRKADLRAAIQTML 620 (661)
Q Consensus 597 ~a~G~~~~~v~~~~el~~al~~a~ 620 (661)
++=|..++.+.+.++|.+.+.++.
T Consensus 156 ~~tgG~~~~~~~~~~l~~~~~~~~ 179 (183)
T cd01453 156 KATNGTYKVILDETHLKELLLEHV 179 (183)
T ss_pred HHhCCeeEeeCCHHHHHHHHHhcC
Confidence 999999999999999999988753
No 356
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=63.56 E-value=45 Score=38.11 Aligned_cols=142 Identities=18% Similarity=0.112 Sum_probs=66.6
Q ss_pred CCHHHHHHHHHHHHhC------CCcEEEEcCCccc--h-HHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCCc
Q 048725 275 PSEVHLEQIVRLISES------KKPVLYVGGGCLN--S-SEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGT 345 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~A------krPvIv~G~g~~~--a-~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g~ 345 (661)
..+++++.+++.|++. +...++.|.+... . ......|...+|.+-+...... .....+-.....+|....
T Consensus 70 sWdeAl~~ia~kl~~i~~~~G~~~i~~~~g~~~~~~~~~~~~~~~~~~~lG~~~~~~~~~~-~~~~~~~~~~~~~G~~~~ 148 (539)
T cd02762 70 DWDEAFDEIAERLRAIRARHGGDAVGVYGGNPQAHTHAGGAYSPALLKALGTSNYFSAATA-DQKPGHFWSGLMFGHPGL 148 (539)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcccccchHHHHHHHHHHHhCCCccccccch-hhhHHHHHHHHhcCCCCC
Confidence 3577888888887642 2344555554432 1 1223566777776532211000 000000000011222111
Q ss_pred HHHHHhhhcCCEEEEeCCCCCCCcCCc---------cc-ccCCCCeEEEEcCCchhhccCCCCcceE--eccHHHHHHHH
Q 048725 346 VYANYAVDKSDLLLAFGVRFDDRVTGK---------LE-AFASRAKIVHIDIDSAEIGKNKQPHVSV--CADLKLALKGI 413 (661)
Q Consensus 346 ~~a~~~l~~aDlvL~vG~~~~~~~t~~---------~~-~~~~~~~vi~Id~d~~~i~~~~~~~~~i--~~D~~~~L~~L 413 (661)
.. .+-+.++|+||++|+...+..... .. .-...+|+|.||+......+.-...+.+ -.|...++.-+
T Consensus 149 ~~-~~D~~~ad~il~~G~N~~~s~~~~~~~~~~~~~~~~a~~~G~kliviDPr~t~ta~~AD~~l~irPGtD~aL~~a~~ 227 (539)
T cd02762 149 HP-VPDIDRTDYLLILGANPLQSNGSLRTAPDRVLRLKAAKDRGGSLVVIDPRRTETAKLADEHLFVRPGTDAWLLAAML 227 (539)
T ss_pred CC-chhhhhCCEEEEEecChHhhCCccccccCHHHHHHHHHhCCCEEEEECCCCchhhHhcCEeeCcCCCcHHHHHHHHH
Confidence 11 123689999999998865432111 11 1134579999999877655432222222 24544444433
Q ss_pred HHHhc
Q 048725 414 NRILG 418 (661)
Q Consensus 414 ~~~l~ 418 (661)
...++
T Consensus 228 ~~ii~ 232 (539)
T cd02762 228 AVLLA 232 (539)
T ss_pred HHHHH
Confidence 34443
No 357
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=63.10 E-value=25 Score=32.24 Aligned_cols=100 Identities=16% Similarity=0.203 Sum_probs=61.9
Q ss_pred HHHHHHhhhhCCCCcEEEEECCcccccChHHHHHH-HHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcc
Q 048725 508 LPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATI-KVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRES 586 (661)
Q Consensus 508 lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta-~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~ 586 (661)
++.+.|+.+|. +++. .++-..++.-+++.|... +-+++|+.+++---+.+.- .-.++...|
T Consensus 55 ~GIcAGa~lAG-kk~a-ilmQnsGlGNsiNal~SL~~ty~iPl~ml~ShRG~~~E----------~i~AQVpmG------ 116 (172)
T COG4032 55 VGICAGAYLAG-KKPA-ILMQNSGLGNSINALASLYVTYKIPLLMLASHRGVLKE----------GIEAQVPMG------ 116 (172)
T ss_pred eeeehhhhhcC-CCcE-EEEeccCcchHHHHHHHHHHHhccchhhhhhccchhhc----------CCccccccc------
Confidence 34556778884 4444 455666677777877543 5678998887654443221 001111112
Q ss_pred cCCccHHHHHhHcCCCEeeeCCHHHHHHHH----HHHHhCCCcEEE
Q 048725 587 EIFPNMLKFAEACGIPGAQVTRKADLRAAI----QTMLDTPGPYLL 628 (661)
Q Consensus 587 ~~~~d~~~~A~a~G~~~~~v~~~~el~~al----~~a~~~~gp~lI 628 (661)
--..++-+.++++.+.+.+++|-.+.+ ..+++..+|+.+
T Consensus 117 ---r~~~kiLe~~~lpt~t~~~p~Ea~~li~~~~~~a~~~s~pv~v 159 (172)
T COG4032 117 ---RALPKILEGLELPTYTIIGPEEALPLIENAILDAFENSRPVAV 159 (172)
T ss_pred ---hhhHHHHhhcCCcccccCCHHHHHHHHHHHHHHHHHcCCceEE
Confidence 146788999999999999999954444 455566777543
No 358
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=62.08 E-value=59 Score=31.76 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=27.6
Q ss_pred CcEEEEECCcccccChHHHHHHHHcC---CCeEEEEEeC-CcchhH
Q 048725 521 AIIVDIDGDGSFIMNVQELATIKVEK---LPIKILLLNN-QHLGMV 562 (661)
Q Consensus 521 ~~vv~i~GDGsf~~~~~eL~ta~~~~---lpv~ivV~NN-~g~g~~ 562 (661)
+.+|.+.|-|| ++|.|..+.+.+ .-+..|+-|| +.|++.
T Consensus 2 ki~VlaSG~GS---Nlqaiida~~~~~~~a~i~~Visd~~~A~~le 44 (200)
T COG0299 2 KIAVLASGNGS---NLQAIIDAIKGGKLDAEIVAVISDKADAYALE 44 (200)
T ss_pred eEEEEEeCCcc---cHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHH
Confidence 45788899887 567777777643 2377778888 667664
No 359
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=61.64 E-value=93 Score=32.37 Aligned_cols=116 Identities=19% Similarity=0.322 Sum_probs=71.7
Q ss_pred hccccCCCeEEecCCCCcccc-hHHHHHHhhhhCCCCcEEEEECCcccccC-hHH-H-HHHHHcCCCeEEEEEeCCcchh
Q 048725 486 FYKYRRPRQWLTSGGLGAMGF-GLPAAIGAAVANPDAIIVDIDGDGSFIMN-VQE-L-ATIKVEKLPIKILLLNNQHLGM 561 (661)
Q Consensus 486 ~~~~~~p~~~~~~~~~g~mG~-~lpaAiGaala~p~~~vv~i~GDGsf~~~-~~e-L-~ta~~~~lpv~ivV~NN~g~g~ 561 (661)
+|.-.-|.+++.- |.+=. .+++|.|.+++- .++. +++=+.|++. .-| | .+.++.++|+++|..+-+ +..
T Consensus 42 ~f~~~fPdR~~Nv---GIaEQ~mvg~AAGLA~~G-k~Pf--v~tfa~F~s~Ra~EQir~~iay~~lnVKiv~t~~G-~t~ 114 (312)
T COG3958 42 YFAKEFPDRFFNV---GIAEQDMVGTAAGLALAG-KKPF--VSTFAAFLSRRAWEQIRNSIAYNNLNVKIVATHAG-VTY 114 (312)
T ss_pred HHHHhCchhheec---chHHHHHHHHHHHHHhcC-CCce--eechHHHHHHHHHHHHHHHhhhccCCeEEEEecCC-ccc
Confidence 3333567777742 22222 488888877763 3333 5677888882 333 3 566788999999988654 211
Q ss_pred HHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeee---CCHHHHHHHHHHHHhCCCcEEEE
Q 048725 562 VMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQV---TRKADLRAAIQTMLDTPGPYLLD 629 (661)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v---~~~~el~~al~~a~~~~gp~lIe 629 (661)
+. .|..+ --++.+|-.=|++...| .+.-+.++++..+.+.+||+-+-
T Consensus 115 ---------g~------dG~sH------q~~EDiaimR~lpn~~V~~P~D~v~~~~i~~~~~~~~GP~Y~R 164 (312)
T COG3958 115 ---------GE------DGSSH------QALEDIAIMRGLPNMTVIAPADAVETRAILDQIADYKGPVYMR 164 (312)
T ss_pred ---------CC------CCccc------hhHHHHHHHhcCCCceEEccCcHHHHHHHHHHHHhcCCCEEEE
Confidence 10 11111 23556666666655443 56668899999999999998864
No 360
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=61.36 E-value=23 Score=40.41 Aligned_cols=114 Identities=18% Similarity=0.152 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHHHHhC------CCcEEEEcCCccchHHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcc---cCCCCc
Q 048725 275 PSEVHLEQIVRLISES------KKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQM---LGMHGT 345 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~A------krPvIv~G~g~~~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~---~G~~g~ 345 (661)
..+++++.+++.|++. ++.+++.|.........+.+|...+|.|-+.+....... ....|. .|..+.
T Consensus 80 sWdeAl~~ia~~l~~~~~~~g~~~i~~~~g~~~~~~~~~~~r~~~~~Gs~~~~~~~~~c~~----~~~~~~~~~~g~~~~ 155 (523)
T cd02757 80 SWDEALDTIADKIRALRKENEPHKIMLHRGRYGHNNSILYGRFTKMIGSPNNISHSSVCAE----SEKFGRYYTEGGWDY 155 (523)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCceEEEEeCCCCCccchHHHHHHHHhCcCCCcCCcchhhh----HHHHHHHHHhCCCCC
Confidence 3577888888877643 233455565443333367899999998754322111000 000011 111111
Q ss_pred HHHHHhhhcCCEEEEeCCCCCCCcCCc-----c-cccCCCCeEEEEcCCchhhcc
Q 048725 346 VYANYAVDKSDLLLAFGVRFDDRVTGK-----L-EAFASRAKIVHIDIDSAEIGK 394 (661)
Q Consensus 346 ~~a~~~l~~aDlvL~vG~~~~~~~t~~-----~-~~~~~~~~vi~Id~d~~~i~~ 394 (661)
. ..-+++||+||++|+..-+..... + ....+.+|+|.||+.......
T Consensus 156 ~--~~D~~~a~~Il~~G~n~~~t~~~~~~~~~~~~a~~~gakliviDPr~s~ta~ 208 (523)
T cd02757 156 N--SYDYANAKYILFFGADPLESNRQNPHAQRIWGGKMDQAKVVVVDPRLSNTAA 208 (523)
T ss_pred C--CcchhcCcEEEEECCChHHhCCCcHHHHHHHHHHHCCCEEEEECCCCChhhH
Confidence 1 123689999999998763321111 0 112356899999998776554
No 361
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=60.85 E-value=16 Score=42.00 Aligned_cols=119 Identities=14% Similarity=0.125 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHHhC------CCcEEEEcCCccc-hHHHHHHHHH-HhCCCeeecCCCCCCCCCCCCCCCcccCCCCcH
Q 048725 275 PSEVHLEQIVRLISES------KKPVLYVGGGCLN-SSEELRKFVE-LTGIPVASTLMGLGSFPGTDELSLQMLGMHGTV 346 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~A------krPvIv~G~g~~~-a~~~l~~lae-~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g~~ 346 (661)
..+++++.+++.|++. +...++.|+.... ....+.+|+. .+|.+.+.+.... .....+.-..-.+|.....
T Consensus 71 SWdeAl~~ia~kl~~i~~~~G~~~i~~~~~~~~~~e~~~~~~~l~~~~~gs~~~~~~~~~-c~~~~~~~~~~~~G~~~~~ 149 (565)
T cd02754 71 SWDEALDLIAERFKAIQAEYGPDSVAFYGSGQLLTEEYYAANKLAKGGLGTNNIDTNSRL-CMASAVAGYKRSFGADGPP 149 (565)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCccHHHHHHHHHHHHHhCCCCcccCCCcc-cchHHHHHHHhhccCCCCC
Confidence 4678888888888753 2344444433222 2334566776 3666654321110 0000000000011211000
Q ss_pred HHHHhhhcCCEEEEeCCCCCCCcCCccc----ccCC--CCeEEEEcCCchhhcc
Q 048725 347 YANYAVDKSDLLLAFGVRFDDRVTGKLE----AFAS--RAKIVHIDIDSAEIGK 394 (661)
Q Consensus 347 ~a~~~l~~aDlvL~vG~~~~~~~t~~~~----~~~~--~~~vi~Id~d~~~i~~ 394 (661)
....-++++|+||++|+.+.+.....+. .... .+++|.||+.......
T Consensus 150 ~~~~Di~~ad~Il~~G~n~~~s~~~~~~~~~~a~~~~~G~klividP~~t~ta~ 203 (565)
T cd02754 150 GSYDDIEHADCFFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDPRRTRTAD 203 (565)
T ss_pred CCHHHHhhCCEEEEECCChhhhhhHHHHHHHHHHhcCCCCEEEEEcCCCCcchH
Confidence 0112357999999999997543221111 1123 6799999997766544
No 362
>COG1915 Uncharacterized conserved protein [Function unknown]
Probab=60.36 E-value=3.7 Score=42.16 Aligned_cols=102 Identities=21% Similarity=0.248 Sum_probs=66.6
Q ss_pred HHHhCCCeeecCCCCCCCCCCCCCCCcccCC-CCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCch
Q 048725 312 VELTGIPVASTLMGLGSFPGTDELSLQMLGM-HGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSA 390 (661)
Q Consensus 312 ae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~-~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~ 390 (661)
|-+-++|++-. |.+-++-||.--.... ..+..-.+.++.+|.||.+-+.+-...+++ ..+...|.|.||++|.
T Consensus 299 CvkNniPfvLA----GSIRDDGPlPdvitdvm~Aq~~m~~~l~g~dmvlMlstMLHSIa~GN--llPs~VKtiCVDiNPa 372 (415)
T COG1915 299 CVKNNIPFVLA----GSIRDDGPLPDVITDVMEAQEEMREHLQGADMVLMLSTMLHSIAVGN--LLPSGVKTICVDINPA 372 (415)
T ss_pred hhhcCCCeEEe----cccccCCCCchHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhhcC--cchhhceEEEEecChH
Confidence 34567777542 3344444443211110 112233467899999999988876666664 3466789999999998
Q ss_pred hhccC----CCCcceEeccHHHHHHHHHHHhcC
Q 048725 391 EIGKN----KQPHVSVCADLKLALKGINRILGG 419 (661)
Q Consensus 391 ~i~~~----~~~~~~i~~D~~~~L~~L~~~l~~ 419 (661)
.+-|- ..-.++++.|+..||..|...+++
T Consensus 373 vVTKL~DRGs~qavgvVTDVGlFlplL~~elkk 405 (415)
T COG1915 373 VVTKLSDRGSSQAVGVVTDVGLFLPLLVRELKK 405 (415)
T ss_pred HheecccCCccceeEEEeehhHhHHHHHHHHHH
Confidence 76542 234588999999999999887653
No 363
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=60.24 E-value=21 Score=37.91 Aligned_cols=113 Identities=12% Similarity=0.160 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCccc----------hHHHHHHHHHHhCCCeeecCCCCCCC---C------CCCCCCC
Q 048725 277 EVHLEQIVRLISESKKPVLYVGGGCLN----------SSEELRKFVELTGIPVASTLMGLGSF---P------GTDELSL 337 (661)
Q Consensus 277 ~~~l~~~~~~L~~AkrPvIv~G~g~~~----------a~~~l~~lae~lg~PV~tt~~gkg~~---p------~~hpl~l 337 (661)
.+.+.++++++++|+-.+|+.|-|... +...+++|=|..++-+... .|-.+. . ...|+.+
T Consensus 232 ~~~i~e~a~~mKna~Fg~if~GlGlt~S~gk~rN~e~a~~Lv~~LNe~ak~tli~m-rgH~Nv~GFnqv~~~e~GYpf~v 310 (429)
T COG1029 232 IEEIEELADMMKNAKFGAIFVGLGLTSSRGKHRNVENAINLVKDLNEYAKFTLIPM-RGHYNVTGFNEVLSWETGYPFAV 310 (429)
T ss_pred HHHHHHHHHHHhcCCcceEEEeeceeecccccccHHHHHHHHHHHhhhceEEEEEe-ccccccccccchhhhhhCCceee
Confidence 567889999999999999999987631 1223333333333322211 111110 0 0122221
Q ss_pred ccc-C--CC--CcHHHHHhh--hcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCch
Q 048725 338 QML-G--MH--GTVYANYAV--DKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSA 390 (661)
Q Consensus 338 g~~-G--~~--g~~~a~~~l--~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~ 390 (661)
... | .+ |-..+.++| +++|..|++|+++..-.....-.......+|+||+-+.
T Consensus 311 dF~rG~prynPgE~s~vdlL~~k~vDAalvi~sDp~ah~P~~~~~~l~eIPvI~iDp~~~ 370 (429)
T COG1029 311 DFSRGYPRYNPGEFSAVDLLKRKEVDAALVIASDPGAHFPRDAVEHLAEIPVICIDPHPT 370 (429)
T ss_pred ecccCCcCCCcccccHHHHHhccCCCeEEEEecCccccChHHHHHHhhcCCEEEecCCCC
Confidence 110 1 01 123456666 47999999999975433222222334567999998664
No 364
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=59.02 E-value=86 Score=29.22 Aligned_cols=97 Identities=16% Similarity=0.237 Sum_probs=56.1
Q ss_pred HHHHHHHHHCCCCEEEeccCCCcHHHHHH--HH-c----CCCCeEEccC---ChhHHHH----HHHHHHH---H-hCCcE
Q 048725 92 DILVEALERQGVTDVFAYPGGASMEIHQA--LT-R----SNNIRNVLPR---HEQGGIF----AAEGYAR---S-SGKPG 153 (661)
Q Consensus 92 d~lv~~L~~~GV~~vFg~PG~~~~~l~~a--L~-~----~~~i~~v~~~---hE~~A~~----~A~Gyar---~-tg~~g 153 (661)
+.+++.|.+.+.=++||+-++......-+ +. + ..++..+... |+..+.. ..+=|.+ . -++--
T Consensus 2 ~~~~~~l~~a~rI~~~G~G~S~~~A~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 81 (154)
T TIGR00441 2 VLLADSFKAGGKVLICGNGGSACDAQHFAAELTGRYRENRPGLPAIALSADVSHLTCVSNDYGYEDVFSRQVEALGQKGD 81 (154)
T ss_pred hHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhhcccccCCCCceEEecCCcHHHHHHhhccCCHHHHHHHHHHHhCCCCC
Confidence 56889999999999999988764332221 11 1 1234443322 2222221 1111222 1 13334
Q ss_pred EEEEccchhh-HHHHHHHHHhhhCCCcEEEEecCCC
Q 048725 154 ICIATSGPGA-TNLVSGLADALLDSVPLVAITGQVP 188 (661)
Q Consensus 154 v~~~tsGpG~-~N~l~gl~~A~~~~iPll~ItG~~p 188 (661)
++++-|..|- .+.+..+..|...++|+|.||+...
T Consensus 82 ~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 82 VLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 6666667764 4556777778999999999998543
No 365
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=58.72 E-value=45 Score=31.49 Aligned_cols=101 Identities=13% Similarity=0.136 Sum_probs=55.8
Q ss_pred hHHHHHHhhhhCCCCcEEEEECCcccc-cChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCc
Q 048725 507 GLPAAIGAAVANPDAIIVDIDGDGSFI-MNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRE 585 (661)
Q Consensus 507 ~lpaAiGaala~p~~~vv~i~GDGsf~-~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~ 585 (661)
.++.|.|+++.. .++++..... |+ .....+.+...++ ++.+|+....++.. +. .|..+..
T Consensus 61 ~vg~a~GlA~~G-~~pi~~~~~~--f~~~a~~~~~~~~~~~-~~~~v~~~~~g~~~---------g~------~G~tH~~ 121 (168)
T smart00861 61 MVGFAAGLALAG-LRPVVAIFFT--FFDRAKDQIRSDGAMG-RVPVVVRHDSGGGV---------GE------DGPTHHS 121 (168)
T ss_pred HHHHHHHHHHcC-CCcEEEeeHH--HHHHHHHHHHHhCccc-CCCEEEEecCcccc---------CC------CCccccc
Confidence 477888888775 3666666543 32 3344455555555 45555554332211 00 0100100
Q ss_pred ccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhC-CCcEEEE
Q 048725 586 SEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDT-PGPYLLD 629 (661)
Q Consensus 586 ~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~-~gp~lIe 629 (661)
.-|...+..--|+..+...+..|++..++.+++. ++|.+|-
T Consensus 122 ---~~~~~~~~~iP~~~v~~P~~~~e~~~~l~~a~~~~~~p~~i~ 163 (168)
T smart00861 122 ---QEDEALLRAIPGLKVVAPSDPAEAKGLLRAAIRRDDGPPVIR 163 (168)
T ss_pred ---hhHHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCCEEEE
Confidence 0133333333356677789999999999999975 6786654
No 366
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=57.60 E-value=25 Score=36.24 Aligned_cols=94 Identities=19% Similarity=0.127 Sum_probs=52.1
Q ss_pred CcEEEEEccchhhHH----HHHHHHHhhhCCCc---EEEEecCCCCcccCCC---CCCCCCHHHHhhccccccccc--CC
Q 048725 151 KPGICIATSGPGATN----LVSGLADALLDSVP---LVAITGQVPRRMIGTD---AFQETPIVEVTRSITKHNYLV--LD 218 (661)
Q Consensus 151 ~~gv~~~tsGpG~~N----~l~gl~~A~~~~iP---ll~ItG~~p~~~~g~~---~~q~~~~~~~~~~itk~~~~v--~~ 218 (661)
+..|+++..|=|++. ..-++-=|...+.| +|+|.-+.... +.+. ..-..+..+..+.+--....| .|
T Consensus 139 ~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveNNq~g-~sT~~~~~~~~~~~~~~a~~~gip~~~VdG~D 217 (265)
T cd02016 139 DKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNNQIG-FTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDD 217 (265)
T ss_pred CCeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEE-EEecHHHhcccccHHHHHeecCCCEEEEcCCC
Confidence 356777777766532 22233334566776 88887543211 1110 000111223333322222233 47
Q ss_pred cCcHHHHHHHHHHHhhcCCCceEEEEec
Q 048725 219 VDDIPRIVREAFLLATSGRPGPVLIDVP 246 (661)
Q Consensus 219 ~~~i~~~i~~A~~~a~s~~~GPV~I~iP 246 (661)
++.+.+.+++|++.++.+. ||+.|++-
T Consensus 218 ~~aV~~a~~~A~~~~r~g~-gp~lIe~~ 244 (265)
T cd02016 218 PEAVVRATRLALEYRQKFK-KDVVIDLV 244 (265)
T ss_pred HHHHHHHHHHHHHHHHhcC-CCEEEEEE
Confidence 7889999999999999987 89999973
No 367
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=57.40 E-value=92 Score=35.44 Aligned_cols=135 Identities=13% Similarity=0.159 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHHHhCC---CcEEEEcCCccc-hHHHHHHHHHH-hCCCeeecCCCCCCCCCCCCCCC---cccCCCCcH
Q 048725 275 PSEVHLEQIVRLISESK---KPVLYVGGGCLN-SSEELRKFVEL-TGIPVASTLMGLGSFPGTDELSL---QMLGMHGTV 346 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~Ak---rPvIv~G~g~~~-a~~~l~~lae~-lg~PV~tt~~gkg~~p~~hpl~l---g~~G~~g~~ 346 (661)
..+++++.+++.|++.+ .-.++.|.+... ....+.+|+.. .|.+.+... ... .+.... -.+|.....
T Consensus 116 SWdeAld~ia~~l~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~----~~~~~~~~~~~~G~~~~~ 190 (524)
T cd02764 116 DWADFDAKVAEQLKAVKDGGKLAVLSGNVNSPTTEALIGDFLKKYPGAKHVVYD-PLS----AEDVNEAWQASFGKDVVP 190 (524)
T ss_pred CHHHHHHHHHHHHHHhhcCCcEEEEeCCCCCchHHHHHHHHHHhCCCCceeeEC-CCC----hHHHHHHHHHHcCCCCCC
Confidence 46778888888777643 334555544332 23345677775 344443211 000 011000 012221111
Q ss_pred HHHHhhhcCCEEEEeCCCCCCCcC------CcccccCCC------CeEEEEcCCchhhccCCCCcceEe--ccHHHHHHH
Q 048725 347 YANYAVDKSDLLLAFGVRFDDRVT------GKLEAFASR------AKIVHIDIDSAEIGKNKQPHVSVC--ADLKLALKG 412 (661)
Q Consensus 347 ~a~~~l~~aDlvL~vG~~~~~~~t------~~~~~~~~~------~~vi~Id~d~~~i~~~~~~~~~i~--~D~~~~L~~ 412 (661)
.+-++++|+||++|+.+.+... ..+....++ .++|.||+........-...+.+. .|... +-+
T Consensus 191 --~~D~~~a~~il~~G~N~~~~~~~~~~~~~~~~~ar~~g~~~~g~kliviDPr~s~ta~~Ad~~l~irPGtD~al-~la 267 (524)
T cd02764 191 --GYDFDKAEVIVSIDADFLGSWISAIRHRHDFAAKRRLGAEEPMSRLVAAESVYTLTGANADVRLAIRPSQEKAF-ALG 267 (524)
T ss_pred --CcChhHCcEEEEECCcccccCcccchhHHHHHHhccccCCCCceeEEEEecCCCchhhhhcceeccCcccHHHH-HHH
Confidence 1347899999999999754321 111111111 389999988776665433333332 44433 344
Q ss_pred HHHHh
Q 048725 413 INRIL 417 (661)
Q Consensus 413 L~~~l 417 (661)
|...+
T Consensus 268 m~~~i 272 (524)
T cd02764 268 LAHKL 272 (524)
T ss_pred HHHHH
Confidence 44443
No 368
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=56.30 E-value=53 Score=31.42 Aligned_cols=92 Identities=15% Similarity=0.264 Sum_probs=60.7
Q ss_pred hCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHH
Q 048725 517 ANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFA 596 (661)
Q Consensus 517 a~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A 596 (661)
+....+-|+++|-..+...+..+.... ++++.+..++|.. .+....++..- .......|. .-...+|
T Consensus 73 a~~~~~~Iavv~~~~~~~~~~~~~~ll--~~~i~~~~~~~~~-e~~~~i~~~~~--~G~~viVGg--------~~~~~~A 139 (176)
T PF06506_consen 73 AKKYGPKIAVVGYPNIIPGLESIEELL--GVDIKIYPYDSEE-EIEAAIKQAKA--EGVDVIVGG--------GVVCRLA 139 (176)
T ss_dssp CCCCTSEEEEEEESS-SCCHHHHHHHH--T-EEEEEEESSHH-HHHHHHHHHHH--TT--EEEES--------HHHHHHH
T ss_pred HHhcCCcEEEEecccccHHHHHHHHHh--CCceEEEEECCHH-HHHHHHHHHHH--cCCcEEECC--------HHHHHHH
Confidence 333446789999999998888887765 7899999998742 33322222211 112223332 2457899
Q ss_pred hHcCCCEeeeCC-HHHHHHHHHHHHh
Q 048725 597 EACGIPGAQVTR-KADLRAAIQTMLD 621 (661)
Q Consensus 597 ~a~G~~~~~v~~-~~el~~al~~a~~ 621 (661)
+.+|++++.+.+ .+.++.||++|+.
T Consensus 140 ~~~gl~~v~i~sg~esi~~Al~eA~~ 165 (176)
T PF06506_consen 140 RKLGLPGVLIESGEESIRRALEEALR 165 (176)
T ss_dssp HHTTSEEEESS--HHHHHHHHHHHHH
T ss_pred HHcCCcEEEEEecHHHHHHHHHHHHH
Confidence 999999999987 8899999999874
No 369
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=55.81 E-value=48 Score=36.03 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=38.4
Q ss_pred hHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCc
Q 048725 507 GLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQH 558 (661)
Q Consensus 507 ~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g 558 (661)
++.+|+||+.+ +.+++..+-=+||.+-...|..++-..+|+++++.+..+
T Consensus 60 A~~~a~GAs~a--G~Ra~TaTSg~Gl~lm~E~~~~a~~~e~P~Viv~~~R~g 109 (376)
T PRK08659 60 SMAAVIGASWA--GAKAMTATSGPGFSLMQENIGYAAMTETPCVIVNVQRGG 109 (376)
T ss_pred HHHHHHhHHhh--CCCeEeecCCCcHHHHHHHHHHHHHcCCCEEEEEeecCC
Confidence 78899999988 566666655566666566677777778999999999775
No 370
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=55.58 E-value=53 Score=33.49 Aligned_cols=105 Identities=17% Similarity=0.076 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHh-----CCcEEEEEccchhhHH---HHHHHHHhhhCCCcEEEEecCCCCcccCC---CCCCCCCHHHHh
Q 048725 138 GIFAAEGYARSS-----GKPGICIATSGPGATN---LVSGLADALLDSVPLVAITGQVPRRMIGT---DAFQETPIVEVT 206 (661)
Q Consensus 138 A~~~A~Gyar~t-----g~~gv~~~tsGpG~~N---~l~gl~~A~~~~iPll~ItG~~p~~~~g~---~~~q~~~~~~~~ 206 (661)
+.-+|.|.+.+. ++..+|+ .|=|..+ ..-++..|...++|.|++.-+.....+.. ......|...++
T Consensus 110 gl~~avG~Ala~~~~~~~~~v~~i--~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~~~~~~~~~~~~~~~ 187 (255)
T cd02012 110 GLSVAVGMALAEKLLGFDYRVYVL--LGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPTDDILFTEDLAKKF 187 (255)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEE--ECcccccccHHHHHHHHHHHcCCCcEEEEEECCCccccCcHhhccCchhHHHHH
Confidence 345567766653 2344444 4656555 47788889999998444443433221111 111123444555
Q ss_pred hcccccccccC--CcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 207 RSITKHNYLVL--DVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 207 ~~itk~~~~v~--~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
+.+--...++. +.+++...+ +.+...+.+|+.|++-..
T Consensus 188 ~a~G~~~~~v~G~d~~~l~~al----~~a~~~~~~P~~I~~~t~ 227 (255)
T cd02012 188 EAFGWNVIEVDGHDVEEILAAL----EEAKKSKGKPTLIIAKTI 227 (255)
T ss_pred HHcCCeEEEECCCCHHHHHHHH----HHHHHcCCCCEEEEEEee
Confidence 55422233454 545554444 444433247998888654
No 371
>PRK09939 putative oxidoreductase; Provisional
Probab=55.27 E-value=14 Score=44.12 Aligned_cols=109 Identities=17% Similarity=0.236 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHHhCCCc---EEEEcCCcc-chHHHHHHHHHHhCCCeeecCCCCCCCCCCC-CCCCcc---cCC-CCc
Q 048725 275 PSEVHLEQIVRLISESKKP---VLYVGGGCL-NSSEELRKFVELTGIPVASTLMGLGSFPGTD-ELSLQM---LGM-HGT 345 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~AkrP---vIv~G~g~~-~a~~~l~~lae~lg~PV~tt~~gkg~~p~~h-pl~lg~---~G~-~g~ 345 (661)
..+++++.+++.|++.+.| .++.++... .+.-.++.|+..+|-+-+...... .| +-..+. +|. .++
T Consensus 126 SWdEAl~~Ia~~L~~i~~p~~i~~y~sg~~snE~~yl~q~f~r~~Gtnn~~~~s~~-----C~~~~~~~l~~~~G~g~~t 200 (759)
T PRK09939 126 SWQQAFDEIGARLQSYSDPNQVEFYTSGRTSNEAAFLYQLFAREYGSNNFPDCSNM-----CHEPTSVGLAASIGVGKGT 200 (759)
T ss_pred cHHHHHHHHHHHHHhhcCCCeEEEEeeCCchHHHHHHHHHHHHHhCCcccCCCCCC-----CchHHHHHHHHhcCCCCCC
Confidence 4678888888888876545 444443333 233456788888887655321111 11 101111 222 122
Q ss_pred HHHHHhhhcCCEEEEeCCCCCCCcCC---ccc-ccCCCCeEEEEcCCc
Q 048725 346 VYANYAVDKSDLLLAFGVRFDDRVTG---KLE-AFASRAKIVHIDIDS 389 (661)
Q Consensus 346 ~~a~~~l~~aDlvL~vG~~~~~~~t~---~~~-~~~~~~~vi~Id~d~ 389 (661)
....+ +++||+||++|+........ .+. .....+++|.||+-.
T Consensus 201 ~~l~D-i~~ad~Ili~G~Np~~~hP~~~~~l~~a~~rGakiIvIDPr~ 247 (759)
T PRK09939 201 VLLED-FEKCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQ 247 (759)
T ss_pred CCHHH-HhhCCEEEEeCCChHHHHHHHHHHHHHHHHCCCEEEEECCCC
Confidence 22223 68999999999987543211 111 123467999999854
No 372
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=55.05 E-value=25 Score=43.39 Aligned_cols=117 Identities=17% Similarity=0.174 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHHHhCCC-----------------cEEEEcCCcc--chHHHHHHHHHHhCCCeeecCCCCCCCCCC--C
Q 048725 275 PSEVHLEQIVRLISESKK-----------------PVLYVGGGCL--NSSEELRKFVELTGIPVASTLMGLGSFPGT--D 333 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~Akr-----------------PvIv~G~g~~--~a~~~l~~lae~lg~PV~tt~~gkg~~p~~--h 333 (661)
..+++++.+++.|++.+. -+.+.|++.. ...-.+.+|++.+|.+-+.........+.. .
T Consensus 124 SWDEAld~IA~kLk~i~~~~~~~~~~~G~~~~~~~sia~~~s~~~tnEe~yl~~kf~r~lGt~n~~~~~~~C~~~~~~al 203 (1009)
T TIGR01553 124 SWDWAIDTIARRVKDTRDATFVTKDAKGQVVNRCDGIASVGSSAMDNEECWLYQKWLRSLGLFYIEHQARIUHSPTVASL 203 (1009)
T ss_pred CHHHHHHHHHHHHHHHHHhhhcccccCCccccccceEEEEecCCCCcHHHHHHHHHHHHhCCCcccCcccccccHHHHHH
Confidence 457788888877765321 1344443322 223456889998987654322111111100 0
Q ss_pred CCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcc----cccCCCCeEEEEcCCchhhcc
Q 048725 334 ELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKL----EAFASRAKIVHIDIDSAEIGK 394 (661)
Q Consensus 334 pl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~----~~~~~~~~vi~Id~d~~~i~~ 394 (661)
...+|... .... ..-+.++|+||++|+...+.....+ +.....+|+|.||+.......
T Consensus 204 ~~~~G~~~-~~~~--~~Di~~Ad~Ilv~G~Np~es~p~~~~~i~~Ak~~GakiIvIDPR~t~tA~ 265 (1009)
T TIGR01553 204 APSFGRGA-MTNN--WVDIKNSDLILVMGGNPAENHPIGFKWAIRAKKKGAKIIHIDPRFNRTAT 265 (1009)
T ss_pred HHhhcCCC-CCCC--HHHHHhCCEEEEECCChhhhChHHHHHHHHHHHcCCEEEEEcCCCCchhH
Confidence 11122211 1111 1236899999999998754322111 122346799999987655443
No 373
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=52.36 E-value=11 Score=38.46 Aligned_cols=69 Identities=19% Similarity=0.212 Sum_probs=46.6
Q ss_pred HHHHhhhcCCEEEEeCCCCCCCcCCcccc--cCCCCeEEEEcCCchhhccCCCCcceEeccHHHHHHHHHHHh
Q 048725 347 YANYAVDKSDLLLAFGVRFDDRVTGKLEA--FASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRIL 417 (661)
Q Consensus 347 ~a~~~l~~aDlvL~vG~~~~~~~t~~~~~--~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 417 (661)
.+.+.++++|++|++|+++--+.-..+.. ....+++|.|+.++..+.. ..+..+.+++..+++.|.+.+
T Consensus 175 ~~~~~~~~~d~liviGTSl~V~Paa~~p~~~~~~g~~~i~iN~~~~~~~~--~~d~~i~~~a~~~~~~l~~~~ 245 (250)
T COG0846 175 EALEALKEADLLIVIGTSLKVYPAAGLPELAKRRGAKVIEINLEPTRLDP--IADEVIRGDAGEVLPLLLEEL 245 (250)
T ss_pred HHHHHhccCCEEEEECcceEEcChhhhhHHHHhcCCEEEEECCCcccCcc--hhHHHHHhhHHHHHHHHHHHh
Confidence 34456689999999999975443322322 2356788999887765543 456667778888887776654
No 374
>PRK13938 phosphoheptose isomerase; Provisional
Probab=52.04 E-value=71 Score=31.32 Aligned_cols=100 Identities=22% Similarity=0.189 Sum_probs=58.8
Q ss_pred cHHHHHHHHHHHCCCCEEEeccCCCcHHHHHH--HHc-----CCCCeEEccCChhHHHHHHHH----HH----HH---h-
Q 048725 89 KGADILVEALERQGVTDVFAYPGGASMEIHQA--LTR-----SNNIRNVLPRHEQGGIFAAEG----YA----RS---S- 149 (661)
Q Consensus 89 ~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~a--L~~-----~~~i~~v~~~hE~~A~~~A~G----ya----r~---t- 149 (661)
..++.+++.|++.|-=++||+-|+...--..+ |.. .+.+..+.. +...+-..|.+ |. +. .
T Consensus 33 ~~a~~~~~~l~~g~rI~i~G~G~S~~~A~~fa~~L~~~~~~~r~~lg~~~l-~~~~~~~~a~~nd~~~~~~~~~~~~~~~ 111 (196)
T PRK13938 33 AIGDRLIAGYRAGARVFMCGNGGSAADAQHFAAELTGHLIFDRPPLGAEAL-HANSSHLTAVANDYDYDTVFARALEGSA 111 (196)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHcCCCccCCcCccceEEE-eCChHHHHHhhccccHHHHHHHHHHhcC
Confidence 46788899999988889999988765543333 221 112222222 22222222222 21 11 1
Q ss_pred CCcEEEEEccchh-hHHHHHHHHHhhhCCCcEEEEecCCCC
Q 048725 150 GKPGICIATSGPG-ATNLVSGLADALLDSVPLVAITGQVPR 189 (661)
Q Consensus 150 g~~gv~~~tsGpG-~~N~l~gl~~A~~~~iPll~ItG~~p~ 189 (661)
++--++++-|..| ..+.+.++..|...+.|+|.||+....
T Consensus 112 ~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s 152 (196)
T PRK13938 112 RPGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGG 152 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 2222444444444 677889999999999999999986643
No 375
>PRK13937 phosphoheptose isomerase; Provisional
Probab=51.38 E-value=86 Score=30.32 Aligned_cols=101 Identities=20% Similarity=0.197 Sum_probs=58.1
Q ss_pred cHHHHHHHHHHHCCCCEEEeccCCCcHHHH--HHHH-c----CCCCeEEccC-ChhHHHHHH---------HHHHH-HhC
Q 048725 89 KGADILVEALERQGVTDVFAYPGGASMEIH--QALT-R----SNNIRNVLPR-HEQGGIFAA---------EGYAR-SSG 150 (661)
Q Consensus 89 ~gad~lv~~L~~~GV~~vFg~PG~~~~~l~--~aL~-~----~~~i~~v~~~-hE~~A~~~A---------~Gyar-~tg 150 (661)
..++.+++.|++.+-=++||+-++.....+ ..+. + ..++..+... +.......+ ..+.. .-.
T Consensus 26 ~aa~~i~~~l~~a~rI~i~G~G~S~~~A~~~a~~~~~~~~~~r~g~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~~ 105 (188)
T PRK13937 26 KVAEALIEALANGGKILLCGNGGSAADAQHIAAELVGRFKKERPALPAIALTTDTSALTAIGNDYGFERVFSRQVEALGR 105 (188)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhhccccCCCCCcceEeccCcHHHHHHHhccCCHHHHHHHHHHhhCC
Confidence 467899999999999999999776543322 2222 1 2245555432 222111110 01111 112
Q ss_pred CcEEEEEccchh-hHHHHHHHHHhhhCCCcEEEEecCCCC
Q 048725 151 KPGICIATSGPG-ATNLVSGLADALLDSVPLVAITGQVPR 189 (661)
Q Consensus 151 ~~gv~~~tsGpG-~~N~l~gl~~A~~~~iPll~ItG~~p~ 189 (661)
+--++++-|..| ..+.+.++..|...++|+|.||+....
T Consensus 106 ~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s 145 (188)
T PRK13937 106 PGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGG 145 (188)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 223444455555 556677888899999999999986543
No 376
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=50.80 E-value=17 Score=36.02 Aligned_cols=45 Identities=20% Similarity=0.206 Sum_probs=32.0
Q ss_pred HHhhhcCCEEEEeCCCCCCCcCCcc-ccc-CCCCeEEEEcCCchhhc
Q 048725 349 NYAVDKSDLLLAFGVRFDDRVTGKL-EAF-ASRAKIVHIDIDSAEIG 393 (661)
Q Consensus 349 ~~~l~~aDlvL~vG~~~~~~~t~~~-~~~-~~~~~vi~Id~d~~~i~ 393 (661)
.+.+.++|++|++|+.+.......+ ... ..+.+++.|+.++....
T Consensus 164 ~~~~~~~d~llviGtSl~v~~~~~l~~~~~~~~~~~~~in~~~~~~~ 210 (222)
T cd00296 164 LEALLEADLVLVIGTSLTVYPAARLLLRAPERGAPVVIINREPTPAD 210 (222)
T ss_pred HHHHhcCCEEEEECCCccccCHHHHHHHHHHCCCcEEEECCCCCCCC
Confidence 3456689999999999987654433 222 24678999999887654
No 377
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=49.29 E-value=22 Score=38.25 Aligned_cols=49 Identities=12% Similarity=0.203 Sum_probs=42.7
Q ss_pred hHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCC
Q 048725 507 GLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQ 557 (661)
Q Consensus 507 ~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~ 557 (661)
++.+|+||+++ +.+++..+=|.+|.+....|..+.-..+|+++++.+=.
T Consensus 60 A~~~a~GAs~a--G~Ra~taTSg~Gl~lm~E~l~~a~~~e~P~v~v~v~R~ 108 (352)
T PRK07119 60 AINMVYGAAAT--GKRVMTSSSSPGISLKQEGISYLAGAELPCVIVNIMRG 108 (352)
T ss_pred HHHHHHHHHhh--CCCEEeecCcchHHHHHHHHHHHHHccCCEEEEEeccC
Confidence 78899999998 67788999999998888889999999999999888754
No 378
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=49.13 E-value=43 Score=32.93 Aligned_cols=37 Identities=16% Similarity=0.211 Sum_probs=21.2
Q ss_pred CcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCC
Q 048725 521 AIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQ 557 (661)
Q Consensus 521 ~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~ 557 (661)
|.+|.+.|+|+.+-.+-+.....+...-+++||-|+.
T Consensus 3 ki~vl~sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~~ 39 (200)
T PRK05647 3 RIVVLASGNGSNLQAIIDACAAGQLPAEIVAVISDRP 39 (200)
T ss_pred eEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEecCc
Confidence 4578889999987765444332222233455555654
No 379
>PRK13685 hypothetical protein; Provisional
Probab=49.11 E-value=1.1e+02 Score=32.58 Aligned_cols=86 Identities=16% Similarity=0.127 Sum_probs=53.3
Q ss_pred CcEEEEECCcccccC---------hHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCcc
Q 048725 521 AIIVDIDGDGSFIMN---------VQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPN 591 (661)
Q Consensus 521 ~~vv~i~GDGsf~~~---------~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d 591 (661)
..+|+++-||.-.-. ......+.+.++++.+|=+-+...++. ++......... .--
T Consensus 194 ~~~IILlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~i~~Ig~G~~~g~~~-------~~g~~~~~~~d--------~~~ 258 (326)
T PRK13685 194 PARIVLMSDGKETVPTNPDNPRGAYTAARTAKDQGVPISTISFGTPYGSVE-------INGQRQPVPVD--------DES 258 (326)
T ss_pred CCEEEEEcCCCCCCCCCCCCcccHHHHHHHHHHcCCeEEEEEECCCCCCcC-------cCCceeeecCC--------HHH
Confidence 356778899965421 123445667788887777665432221 01100000000 024
Q ss_pred HHHHHhHcCCCEeeeCCHHHHHHHHHHHHh
Q 048725 592 MLKFAEACGIPGAQVTRKADLRAAIQTMLD 621 (661)
Q Consensus 592 ~~~~A~a~G~~~~~v~~~~el~~al~~a~~ 621 (661)
..++|+.-|+.++.+++.+||.+++++.-+
T Consensus 259 L~~iA~~tgG~~~~~~~~~~L~~if~~I~~ 288 (326)
T PRK13685 259 LKKIAQLSGGEFYTAASLEELRAVYATLQQ 288 (326)
T ss_pred HHHHHHhcCCEEEEcCCHHHHHHHHHHHHH
Confidence 789999999999999999999999887643
No 380
>PRK13761 hypothetical protein; Provisional
Probab=48.80 E-value=35 Score=33.90 Aligned_cols=136 Identities=18% Similarity=0.281 Sum_probs=77.4
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCcc-chHHHHHHHHHHhCCCeeecCCCC---------------CC--CCCCCCCC
Q 048725 275 PSEVHLEQIVRLISESKKPVLYVGGGCL-NSSEELRKFVELTGIPVASTLMGL---------------GS--FPGTDELS 336 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~AkrPvIv~G~g~~-~a~~~l~~lae~lg~PV~tt~~gk---------------g~--~p~~hpl~ 336 (661)
+.....+.++.+|.-|++|||=+-+... -..+++.+|++.+|+++=..+.-+ |. +-..++ .
T Consensus 52 ~A~~A~raAaA~LLlA~~PVISVNGN~AAL~p~eiveLa~~~~A~iEVNLF~RT~eR~~~I~~~l~~~Ga~~vlG~~~-~ 130 (248)
T PRK13761 52 SALEAERAAAALLLLAKHPVISVNGNTAALVPEEIVELAEALNAKLEVNLFYRTEERVEKIAEVLREHGAKEVLGTDE-D 130 (248)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEcchHHhhChHHHHHHHHHhCCCEEEEeccCCHHHHHHHHHHHHHcCCceeeCCCC-c
Confidence 3566777888888899999998876654 467899999999999984432211 00 000000 0
Q ss_pred CcccCCCCcHH--HHHhhhcCCEEEEeCCCCCCCcCCccccc-CCCCeEEEEcCCchhhccCCCCcceEeccHHHHHHHH
Q 048725 337 LQMLGMHGTVY--ANYAVDKSDLLLAFGVRFDDRVTGKLEAF-ASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGI 413 (661)
Q Consensus 337 lg~~G~~g~~~--a~~~l~~aDlvL~vG~~~~~~~t~~~~~~-~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L 413 (661)
....|...... ..+=+-.||+||+= -.-+|+. +.+ .-.+++|.||.+|-. ......++.|+-.+-.++..|
T Consensus 131 ~~ip~L~~~R~~v~~~GIy~ADVVLVP-LEDGDR~----EaL~~mGK~VI~IDLNPLS-RTar~A~itIVDni~RA~p~m 204 (248)
T PRK13761 131 ARIPGLDHERAKVSEDGIYSADVVLVP-LEDGDRT----EALVKMGKTVIAIDLNPLS-RTARTATITIVDNITRAVPNM 204 (248)
T ss_pred CcCCCCCCccceECcccceeccEEEec-CCCCcHH----HHHHHcCCeEEEEeCCCcc-cccccCceeeehhHHHHHHHH
Confidence 00111111000 01124467887753 1111111 111 235689999999863 123456888888887777777
Q ss_pred HHHh
Q 048725 414 NRIL 417 (661)
Q Consensus 414 ~~~l 417 (661)
.+..
T Consensus 205 ~~~~ 208 (248)
T PRK13761 205 TEYA 208 (248)
T ss_pred HHHH
Confidence 6544
No 381
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=47.79 E-value=53 Score=38.24 Aligned_cols=141 Identities=14% Similarity=0.138 Sum_probs=70.6
Q ss_pred CCHHHHHHHHHHHHhCCC------cEEEEcCCccc----hHHHHHHHHHHhCCCeeecC-CCCCCCCCCCCCCCcccCCC
Q 048725 275 PSEVHLEQIVRLISESKK------PVLYVGGGCLN----SSEELRKFVELTGIPVASTL-MGLGSFPGTDELSLQMLGMH 343 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~Akr------PvIv~G~g~~~----a~~~l~~lae~lg~PV~tt~-~gkg~~p~~hpl~lg~~G~~ 343 (661)
..+++++.+++.|++.++ -.++.|.+... ....+.+|++.+|.++.... ...+..-......+|... .
T Consensus 79 sWDeAl~~ia~kl~~i~~~~G~~ai~~~~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~~~~~~~~~~~G~~~-~ 157 (617)
T cd02770 79 SWDEALDTIASELKRIIEKYGNEAIYVNYGTGTYGGVPAGRGAIARLLNLTGGYLNYYGTYSWAQITTATPYTYGAAA-S 157 (617)
T ss_pred cHHHHHHHHHHHHHHHHHHhCchheEeeccccccCccccchHHHHHHHHhcCCccCCCCCccHhHHhhhhceEEecCC-C
Confidence 467888888888765332 23334444322 24566788888875432110 000000011222233211 1
Q ss_pred CcHHHHHhhhcCCEEEEeCCCCCCCcCC------ccc-ccCCCCeEEEEcCCchhhcc-CCCCcceEe--ccHHHHHHHH
Q 048725 344 GTVYANYAVDKSDLLLAFGVRFDDRVTG------KLE-AFASRAKIVHIDIDSAEIGK-NKQPHVSVC--ADLKLALKGI 413 (661)
Q Consensus 344 g~~~a~~~l~~aDlvL~vG~~~~~~~t~------~~~-~~~~~~~vi~Id~d~~~i~~-~~~~~~~i~--~D~~~~L~~L 413 (661)
+.. ..-+.+||+||++|+........ .+. ...+.+++|.||+....... .-...+.|. .|...++.-+
T Consensus 158 ~~~--~~D~~~a~~ii~wG~N~~~~~~~~~~~~~~~~~a~~~G~klivIDPr~t~tA~~~AD~~i~irPGTD~AL~lam~ 235 (617)
T cd02770 158 GSS--LDDLKDSKLVVLFGHNPAETRMGGGGSTYYYLQAKKAGAKFIVIDPRYTDTAVTLADEWIPIRPGTDAALVAAMA 235 (617)
T ss_pred CCC--HHHHhcCCEEEEECCCHHHhcCCCCchHHHHHHHHHcCCeEEEECCCCCccccccCCEEECCCCCcHHHHHHHHH
Confidence 111 22357899999999886433211 111 11256799999998765543 222223333 6666555544
Q ss_pred HHHhc
Q 048725 414 NRILG 418 (661)
Q Consensus 414 ~~~l~ 418 (661)
...++
T Consensus 236 ~~ii~ 240 (617)
T cd02770 236 YVMIT 240 (617)
T ss_pred HHHHH
Confidence 44444
No 382
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=47.58 E-value=99 Score=35.61 Aligned_cols=68 Identities=26% Similarity=0.226 Sum_probs=39.7
Q ss_pred hhhcCCEEEEeCCCCCCCcCCccc----ccCCCCeEEEEcCCchhhccCCCCcceEe--ccHHHHHHHHHHHhc
Q 048725 351 AVDKSDLLLAFGVRFDDRVTGKLE----AFASRAKIVHIDIDSAEIGKNKQPHVSVC--ADLKLALKGINRILG 418 (661)
Q Consensus 351 ~l~~aDlvL~vG~~~~~~~t~~~~----~~~~~~~vi~Id~d~~~i~~~~~~~~~i~--~D~~~~L~~L~~~l~ 418 (661)
-+.++|+||++|+.........+. .....+|+|.||+........-...+.+. .|...++..+...++
T Consensus 156 D~~~ad~il~~G~Np~~s~~~~~~~~~~a~~~GakliviDPr~s~ta~~Ad~~l~irPGTD~al~~am~~~ii~ 229 (567)
T cd02765 156 DWVNAKTIIIWGSNILETQFQDAEFFLDARENGAKIVVIDPVYSTTAAKADQWVPIRPGTDPALALGMINYILE 229 (567)
T ss_pred HHhcCcEEEEECCChHHccchhHHHHHHHHHcCCeEEEECCCCCcchhhcCEEeccCCCchHHHHHHHHHHHHh
Confidence 367999999999997443222221 12356799999998776554322223332 555555544444443
No 383
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=47.43 E-value=39 Score=35.40 Aligned_cols=56 Identities=21% Similarity=0.182 Sum_probs=35.0
Q ss_pred cEEEEcCCccchHHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCCcHHHHHh-hhcCCEEEEeCCCC
Q 048725 293 PVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYA-VDKSDLLLAFGVRF 365 (661)
Q Consensus 293 PvIv~G~g~~~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g~~~a~~~-l~~aDlvL~vG~~~ 365 (661)
-||+++....+. -....+||.+++||++|+.| .+. .....++ -.+.|+||.+|...
T Consensus 30 ~VIlvsDn~aD~-~lA~~iaellNA~Vlttpwg--~yn--------------es~~~eI~~lnpd~VLIIGGp~ 86 (337)
T COG2247 30 VVILVSDNEADL-LLALPIAELLNAPVLTTPWG--IYN--------------ESVLDEIIELNPDLVLIIGGPI 86 (337)
T ss_pred EEEEecchHHHH-HHhhHHHHHhCCeeEecCcc--ccc--------------HHHHHHHHhhCCceEEEECCCC
Confidence 455555433222 23467999999999988743 221 1122233 35899999999875
No 384
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=47.19 E-value=46 Score=38.70 Aligned_cols=119 Identities=14% Similarity=0.126 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHhCCC----cEEEE--cCCcc-----chHHHHHHHHHHhCCCeeecCCCCCC--CCCCCCCCCcccC
Q 048725 275 PSEVHLEQIVRLISESKK----PVLYV--GGGCL-----NSSEELRKFVELTGIPVASTLMGLGS--FPGTDELSLQMLG 341 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~Akr----PvIv~--G~g~~-----~a~~~l~~lae~lg~PV~tt~~gkg~--~p~~hpl~lg~~G 341 (661)
..+++++.+++.|++.+. -.|+. |.+.. .....+.+|+..+|.++.+ ...... .-..++...|...
T Consensus 77 SWDEAl~~iA~kl~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~-~~~~c~~~~~~~~~~~~G~~~ 155 (609)
T cd02751 77 SWDEALDLVASELKRIREKYGNEAIFGGSYGWASAGRLHHAQSLLHRFLNLIGGYLGS-YGTYSTGAAQVILPHVVGSDE 155 (609)
T ss_pred cHHHHHHHHHHHHHHHHHHhCcceeecccCCcccccccccchHHHHHHHHhcCCCcCC-CCCccHHHHHhHhhhEEccch
Confidence 467888888888765321 22322 32221 2345678888888764421 110000 0001122222211
Q ss_pred CCC-cHHHHHhhhcCCEEEEeCCCCCCCcCC-----------cc-cccCCCCeEEEEcCCchhhcc
Q 048725 342 MHG-TVYANYAVDKSDLLLAFGVRFDDRVTG-----------KL-EAFASRAKIVHIDIDSAEIGK 394 (661)
Q Consensus 342 ~~g-~~~a~~~l~~aDlvL~vG~~~~~~~t~-----------~~-~~~~~~~~vi~Id~d~~~i~~ 394 (661)
..+ .....++.+++|+||++|+........ .+ +.....+++|.||+.......
T Consensus 156 ~~~~~~~~~D~~~~ad~il~wG~N~~~~~~~~~~~~~~~~~~~~~~a~~~GakiivIDPr~s~ta~ 221 (609)
T cd02751 156 VYEQGTSWDDIAEHSDLVVLFGANPLKTRQGGGGGPDHGSYYYLKQAKDAGVRFICIDPRYTDTAA 221 (609)
T ss_pred hccCCCChhhHHhcCCEEEEECCCHHHhcCCCCCccCcchHHHHHHHHHCCCeEEEECCCCCcccc
Confidence 000 111223334599999999886433221 11 112346799999998766543
No 385
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=46.95 E-value=86 Score=32.13 Aligned_cols=102 Identities=14% Similarity=0.083 Sum_probs=60.6
Q ss_pred cHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCC-------CeEEccCChhHH-----------HH-HHHHHHHHh
Q 048725 89 KGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNN-------IRNVLPRHEQGG-----------IF-AAEGYARSS 149 (661)
Q Consensus 89 ~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~-------i~~v~~~hE~~A-----------~~-~A~Gyar~t 149 (661)
...+.+++.|++.|-=++||.-++..+.++|+.+..+. +..+..-.+.+. .. +.+=.+..-
T Consensus 37 ~av~~~~~~l~~ggrl~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~~iagg~~a~~~a~~~~edd~~~~~~~l~a~~l 116 (257)
T cd05007 37 RAVDAAAERLRAGGRLIYVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGGEPALTRAVEGAEDDEEAGAADLQAINL 116 (257)
T ss_pred HHHHHHHHHHHcCCEEEEEcCcHHHHHHHHHHHhccccccCCcccceEEEeCCHHHHHhhccccCChHHHHHHHHHHcCC
Confidence 45788999999988878888888877777887665431 222222222111 11 111111111
Q ss_pred CCcEEEEEccchh-hHHHHHHHHHhhhCCCcEEEEecCCCCc
Q 048725 150 GKPGICIATSGPG-ATNLVSGLADALLDSVPLVAITGQVPRR 190 (661)
Q Consensus 150 g~~gv~~~tsGpG-~~N~l~gl~~A~~~~iPll~ItG~~p~~ 190 (661)
++--+++.-|..| .-..+.++..|...+.|+|.||+.....
T Consensus 117 ~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~ 158 (257)
T cd05007 117 TERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSP 158 (257)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 2223444444455 4556677788999999999999866543
No 386
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=46.90 E-value=1.4e+02 Score=35.87 Aligned_cols=112 Identities=19% Similarity=0.226 Sum_probs=63.8
Q ss_pred CcccchHHHHHHhhhhCC-------CCcE--EEEECCcccccC--hHHHHHHHHcCC------CeEEEEEeCCcchhHHH
Q 048725 502 GAMGFGLPAAIGAAVANP-------DAII--VDIDGDGSFIMN--VQELATIKVEKL------PIKILLLNNQHLGMVMQ 564 (661)
Q Consensus 502 g~mG~~lpaAiGaala~p-------~~~v--v~i~GDGsf~~~--~~eL~ta~~~~l------pv~ivV~NN~g~g~~~~ 564 (661)
..+=+--|.-.|..-|.. ..+| |.+-||-+|.=- .+|.-. ..++ +.+.||+||+. |-+
T Consensus 298 SHLE~v~PVV~G~vRa~Qd~~~d~~~~k~lpiliHGDAAfaGQGVV~Etln--ls~~~gysvgGtiHiviNNQi-GFT-- 372 (906)
T COG0567 298 SHLEIVNPVVEGSVRAKQDRLGDTERDKVLPILIHGDAAFAGQGVVAETLN--LSRLDGYSVGGTWHIVINNQI-GFT-- 372 (906)
T ss_pred chhhhhchhhhcchHhhhhhhccCccceeEEEEEecChhcCCccHHHHHHH--hhCCCCcccCCeEEEEEecCC-CCC--
Confidence 445555566677655531 1133 488999998754 344333 3333 37788999984 221
Q ss_pred HHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeee--CCHHHHHHHHHHHHh----CCCcEEEEEEeCC
Q 048725 565 WEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQV--TRKADLRAAIQTMLD----TPGPYLLDVIFPH 634 (661)
Q Consensus 565 ~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v--~~~~el~~al~~a~~----~~gp~lIeV~~~~ 634 (661)
.. ...-..+|. ..| +|++++++...| ++++-...+.+-|++ -+++++|++.+.+
T Consensus 373 -------Ts-p~~sRSt~Y-----~TD---vAKm~~aPifHVN~DDPEAv~~a~~~A~e~R~~F~kDvvIDlvcYR 432 (906)
T COG0567 373 -------TS-PADARSTPY-----CTD---VAKMIEAPIFHVNADDPEAVLFAPALALEYRNGFKKDVVIDLVCYR 432 (906)
T ss_pred -------CC-cccccCCCC-----CCC---hhhccCCceeecccCCchhhhhhHHHHHHHHhhcCCCeeeecccCC
Confidence 10 000001111 134 678888888877 466655455554443 5789999999864
No 387
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=45.91 E-value=47 Score=37.27 Aligned_cols=117 Identities=17% Similarity=0.174 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHHhCC-----Cc-EEEEcCCccc--hHHHHH-HHHHHhCCCeeecCCCCCCCCC--CCCCCCcccCCC
Q 048725 275 PSEVHLEQIVRLISESK-----KP-VLYVGGGCLN--SSEELR-KFVELTGIPVASTLMGLGSFPG--TDELSLQMLGMH 343 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~Ak-----rP-vIv~G~g~~~--a~~~l~-~lae~lg~PV~tt~~gkg~~p~--~hpl~lg~~G~~ 343 (661)
..+++++.+++.|++.+ .- .++.|.+... ...... +|+..+|.+.+.........+. .+....|. + .
T Consensus 74 sWdeAl~~ia~~l~~~~~~~G~~~i~~~~g~~~~~~~~~~~~~~~~~~~~Gs~~~~~~~~~c~~~~~~~~~~~~G~-~-~ 151 (477)
T cd02759 74 SWDEALDEIAEKLAEIKAEYGPESIATAVGTGRGTMWQDSLFWIRFVRLFGSPNLFLSGESCYWPRDMAHALTTGF-G-L 151 (477)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCceEEEeccCCCccccchhHHHHHHHHhcCCCcccCCcccchHHHHHHHHHhhcc-C-C
Confidence 35777888888776532 12 3344544332 112222 6888888765432110000000 00111111 1 1
Q ss_pred CcHHHHHhhhcCCEEEEeCCCCCCCcC-Cccccc----CCCCeEEEEcCCchhhccC
Q 048725 344 GTVYANYAVDKSDLLLAFGVRFDDRVT-GKLEAF----ASRAKIVHIDIDSAEIGKN 395 (661)
Q Consensus 344 g~~~a~~~l~~aDlvL~vG~~~~~~~t-~~~~~~----~~~~~vi~Id~d~~~i~~~ 395 (661)
+. ...-+++||+||++|+.+..... ..+..+ .+..++|.||+........
T Consensus 152 ~~--~~~d~~~ad~Il~~G~n~~~~~~~~~~~~~~~ar~~g~klividpr~s~ta~~ 206 (477)
T cd02759 152 GY--DEPDWENPECIVLWGKNPLNSNLDLQGHWLVAAMKRGAKLIVVDPRLTWLAAR 206 (477)
T ss_pred CC--CchhhhcCCEEEEEccChhhhCcHHHHHHHHHHHHCCCEEEEECCCCChhhHh
Confidence 11 11236799999999999754332 111111 2457999999987766543
No 388
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=45.58 E-value=50 Score=35.90 Aligned_cols=103 Identities=20% Similarity=0.269 Sum_probs=65.8
Q ss_pred HHHHhhhhCCCCc--EEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCccc
Q 048725 510 AAIGAAVANPDAI--IVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESE 587 (661)
Q Consensus 510 aAiGaala~p~~~--vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~ 587 (661)
+|=|.+-+. +++ |++-.|-|+... ...|+.|..-+.|++++-- + ...+..+.+.++
T Consensus 144 aAegYaR~s-gKPGvvlvTSGPGATNv-vtp~ADAlaDg~PlVvftG--Q-------VptsaIGtDAFQ----------- 201 (675)
T KOG4166|consen 144 AAEGYARSS-GKPGVVLVTSGPGATNV-VTPLADALADGVPLVVFTG--Q-------VPTSAIGTDAFQ----------- 201 (675)
T ss_pred hhhhhhhhc-CCCcEEEEecCCCcccc-cchhhHHhhcCCcEEEEec--c-------cchhhcccchhc-----------
Confidence 455555554 344 333446565544 4567777778888766421 1 111111211111
Q ss_pred CCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 048725 588 IFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPHQ 635 (661)
Q Consensus 588 ~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~~ 635 (661)
..|+..+.++|--+.+-|.+.+||..-+++|++ .+||+|+|+.-|-.
T Consensus 202 -EadiVgisRScTKwNvmVkdVedlPrrI~EAFeiATSGRPGPVLVDlPKDvt 253 (675)
T KOG4166|consen 202 -EADIVGISRSCTKWNVMVKDVEDLPRRIEEAFEIATSGRPGPVLVDLPKDVT 253 (675)
T ss_pred -cCCeeeeeeccceeheeeecHHHhhHHHHHHhhhhccCCCCCeEeeCcHHHH
Confidence 147888889998888999999999999999886 57899999876643
No 389
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=45.39 E-value=61 Score=37.34 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=37.5
Q ss_pred hHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcc
Q 048725 507 GLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHL 559 (661)
Q Consensus 507 ~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~ 559 (661)
++.+|+||+++ +.+++..+==.+|..-...|..+.-..+|+++++.+..|-
T Consensus 249 A~~~a~GAs~a--G~Ra~taTSg~Gl~lm~E~l~~a~~~~~P~Vi~~~~R~gp 299 (562)
T TIGR03710 249 AINMAIGASYA--GARAMTATSGPGFALMTEALGLAGMTETPLVIVDVQRGGP 299 (562)
T ss_pred HHHHHHhHHhc--CCceeecCCCCChhHhHHHHhHHHhccCCEEEEEcccCCC
Confidence 78999999998 4555555544555554556777888899999999988753
No 390
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=45.27 E-value=50 Score=39.72 Aligned_cols=109 Identities=13% Similarity=0.165 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCcc-chHHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCc---ccCCCCcHHHHHh
Q 048725 276 SEVHLEQIVRLISESKKPVLYVGGGCL-NSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQ---MLGMHGTVYANYA 351 (661)
Q Consensus 276 ~~~~l~~~~~~L~~AkrPvIv~G~g~~-~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg---~~G~~g~~~a~~~ 351 (661)
.+..++++++.|++++ -+ ..++... ...-.+++|++.+|.+.+..- ++- + ++...+ ..|...+.... -
T Consensus 296 ~e~A~deA~e~lk~~~-aI-~~S~~~TNEE~YllqKLar~lgtnnvD~~-aR~-~---~~~~~~l~~~~G~~~t~sl~-D 367 (819)
T PRK08493 296 DEKAFKEAVEAFKEAK-AI-KFNSFITNEEALILQRLKKKFGLKLINEE-ALK-F---QQFLKVFSEVSGKSYSANLE-D 367 (819)
T ss_pred hHHHHHHHHHHHhhCC-EE-EecCCCCHHHHHHHHHHHHHhCCCCccch-hhh-h---hHHHHHHHHhcCCCCCCCHH-H
Confidence 3778899999988654 33 3344333 345567899998887665311 110 1 111000 11211111222 3
Q ss_pred hhcCCEEEEeCCCCCCCcC---Cccc-cc-CCCCeEEEEcCCchhh
Q 048725 352 VDKSDLLLAFGVRFDDRVT---GKLE-AF-ASRAKIVHIDIDSAEI 392 (661)
Q Consensus 352 l~~aDlvL~vG~~~~~~~t---~~~~-~~-~~~~~vi~Id~d~~~i 392 (661)
+.++|+||++|+.+.+... ..+. .. ..++++|.||+-....
T Consensus 368 I~~AD~IlviGsN~~e~hPvl~~~I~~A~k~~gaklIvidPr~~~~ 413 (819)
T PRK08493 368 IKTSDFVVVAGSALKTDNPLLRYAINNALKMNKASGLYFHPIKDNV 413 (819)
T ss_pred HhhCCEEEEECCChhhhCHHHHHHHHHHHHhCCCeEEEEecCCchh
Confidence 7899999999998754332 1111 22 2456899988866443
No 391
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=45.23 E-value=99 Score=37.46 Aligned_cols=68 Identities=10% Similarity=0.067 Sum_probs=38.3
Q ss_pred hhhcCCEEEEeCCCCCCCcCCccccc------CCCCeEEEEcCCchhhccCCCCcceE--eccHHHHHHHHHHHhc
Q 048725 351 AVDKSDLLLAFGVRFDDRVTGKLEAF------ASRAKIVHIDIDSAEIGKNKQPHVSV--CADLKLALKGINRILG 418 (661)
Q Consensus 351 ~l~~aDlvL~vG~~~~~~~t~~~~~~------~~~~~vi~Id~d~~~i~~~~~~~~~i--~~D~~~~L~~L~~~l~ 418 (661)
-+.+||+||++|+...+.....+..+ .+.+|+|.||+......+.-...+.+ -.|...++.-+...+.
T Consensus 203 Di~~a~~il~~G~Np~~~~p~~~~~i~~a~~~~~G~kiiviDPr~t~ta~~ad~~l~irPGtD~al~~am~~~ii~ 278 (830)
T PRK13532 203 DIEAADAFVLWGSNMAEMHPILWSRVTDRRLSNPDVKVAVLSTFEHRSFELADNGIIFTPQTDLAILNYIANYIIQ 278 (830)
T ss_pred HHHhCCEEEEECCCchhcCcHHHHHHHHHHhcCCCCeEEEECCCCCchhHhcCeeeccCCCCcHHHHHHHHHHHHH
Confidence 46899999999998754322111111 24579999998655443322222222 2566555554444444
No 392
>COG1701 Uncharacterized protein conserved in archaea [Function unknown]
Probab=45.22 E-value=39 Score=33.20 Aligned_cols=138 Identities=17% Similarity=0.284 Sum_probs=80.8
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEcCCcc-chHHHHHHHHHHhCCCeeecCC-----------------C-CCCCCCCCC
Q 048725 274 EPSEVHLEQIVRLISESKKPVLYVGGGCL-NSSEELRKFVELTGIPVASTLM-----------------G-LGSFPGTDE 334 (661)
Q Consensus 274 ~~~~~~l~~~~~~L~~AkrPvIv~G~g~~-~a~~~l~~lae~lg~PV~tt~~-----------------g-kg~~p~~hp 334 (661)
++..+.++.++..|.-|++|||=+-+... -..+++.+|++.+|+.+-..+. | +.++-. .|
T Consensus 53 ~~A~eA~raAaA~LlLAk~PVISVNGN~AAL~p~e~v~La~~~~aklEVNLF~RteeRv~~I~e~L~~~Ga~~vLg~-~~ 131 (256)
T COG1701 53 PPALEAIRAAAAALLLAKHPVISVNGNVAALVPEEVVELAEATGAKLEVNLFYRTEERVRKIAEVLKEHGAKEVLGT-DP 131 (256)
T ss_pred chHHHHHHHHHHHHHhccCCeEEEcCceeeeCcHHHHHHHHHhCCceEEEeeccCHHHHHHHHHHHHhcCcceeecC-Cc
Confidence 34667788888888889999999977654 4678999999999988744321 1 111111 11
Q ss_pred CCCcccCCCCcHH--HHHhhhcCCEEEEeCCCCCCCcCCccccc-CCCCeEEEEcCCchhhccCCCCcceEeccHHHHHH
Q 048725 335 LSLQMLGMHGTVY--ANYAVDKSDLLLAFGVRFDDRVTGKLEAF-ASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALK 411 (661)
Q Consensus 335 l~lg~~G~~g~~~--a~~~l~~aDlvL~vG~~~~~~~t~~~~~~-~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~ 411 (661)
......|..+... ..+=+-.||+||+= -.-+|+. +.+ .-.+++|.||.+|-. ......++.|+-.+-.+++
T Consensus 132 ~~~~ip~l~s~R~~v~~~GIy~ADVVLvp-LEDGDRt----eaLv~mGK~ViaIDLNPLS-RTar~AsItIVDnivRA~p 205 (256)
T COG1701 132 DAARIPGLESERGKVSEEGIYSADVVLVP-LEDGDRT----EALVRMGKTVIAIDLNPLS-RTARKASITIVDNIVRAVP 205 (256)
T ss_pred ccccCCCccccccccCcccceeccEEEEe-cCCCcHH----HHHHHhCCeEEEEeCCccc-cccccCceeeeHHHHHHHH
Confidence 1111122221110 01224478888763 1111211 111 125689999998863 1234567888888877777
Q ss_pred HHHHHhc
Q 048725 412 GINRILG 418 (661)
Q Consensus 412 ~L~~~l~ 418 (661)
.|.+...
T Consensus 206 ~li~~~~ 212 (256)
T COG1701 206 NLIEFVK 212 (256)
T ss_pred HHHHHHH
Confidence 7776554
No 393
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=44.33 E-value=49 Score=34.38 Aligned_cols=36 Identities=8% Similarity=0.105 Sum_probs=22.2
Q ss_pred CCCcEEEEECCcccccChHHHHHHHHcC---CCeEEEEEeCC
Q 048725 519 PDAIIVDIDGDGSFIMNVQELATIKVEK---LPIKILLLNNQ 557 (661)
Q Consensus 519 p~~~vv~i~GDGsf~~~~~eL~ta~~~~---lpv~ivV~NN~ 557 (661)
+.|-+|++.|-|+ +++.|..+.+.+ ..+..||-||.
T Consensus 84 ~~ki~vl~Sg~g~---nl~~l~~~~~~g~l~~~i~~visn~~ 122 (280)
T TIGR00655 84 LKRVAILVSKEDH---CLGDLLWRWYSGELDAEIALVISNHE 122 (280)
T ss_pred CcEEEEEEcCCCh---hHHHHHHHHHcCCCCcEEEEEEEcCh
Confidence 4466777777655 556666655443 44666777764
No 394
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=42.74 E-value=39 Score=31.16 Aligned_cols=71 Identities=18% Similarity=0.114 Sum_probs=45.0
Q ss_pred CCcEEEEECCcccccCh-HHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhH
Q 048725 520 DAIIVDIDGDGSFIMNV-QELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEA 598 (661)
Q Consensus 520 ~~~vv~i~GDGsf~~~~-~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a 598 (661)
.++.|.++.||.-.-+. +.+..+.+.++++.+|-+....-. ...+..+|+.
T Consensus 99 ~~~~iv~iTDG~~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~----------------------------~~~l~~la~~ 150 (172)
T PF13519_consen 99 RRRAIVLITDGEDNSSDIEAAKALKQQGITIYTVGIGSDSDA----------------------------NEFLQRLAEA 150 (172)
T ss_dssp EEEEEEEEES-TTHCHHHHHHHHHHCTTEEEEEEEES-TT-E----------------------------HHHHHHHHHH
T ss_pred CceEEEEecCCCCCcchhHHHHHHHHcCCeEEEEEECCCccH----------------------------HHHHHHHHHh
Confidence 56788899999665432 334444445555444444333210 0247789999
Q ss_pred cCCCEeee-CCHHHHHHHHHH
Q 048725 599 CGIPGAQV-TRKADLRAAIQT 618 (661)
Q Consensus 599 ~G~~~~~v-~~~~el~~al~~ 618 (661)
-|..++.+ .+.++|.++|++
T Consensus 151 tgG~~~~~~~~~~~l~~~~~~ 171 (172)
T PF13519_consen 151 TGGRYFHVDNDPEDLDDAFQQ 171 (172)
T ss_dssp TEEEEEEE-SSSHHHHHHHHH
T ss_pred cCCEEEEecCCHHHHHHHHhc
Confidence 99999999 588999998875
No 395
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=42.69 E-value=79 Score=33.08 Aligned_cols=99 Identities=13% Similarity=0.077 Sum_probs=57.6
Q ss_pred cHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCe-------E------------EccCChhH-HHHHHHHHHHH
Q 048725 89 KGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIR-------N------------VLPRHEQG-GIFAAEGYARS 148 (661)
Q Consensus 89 ~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~-------~------------v~~~hE~~-A~~~A~Gyar~ 148 (661)
...+.+++.|++.|-=++||+-++..+.+.|+.+..+.+. . +...++.. ++.........
T Consensus 45 ~av~~~~~~l~~gGrl~~~G~G~Sg~l~~~DA~e~~~t~g~~~~~~~~~iaGg~~a~~~~~e~~Ed~~~~~~~dl~~~~l 124 (291)
T TIGR00274 45 AAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSPELVKGIIAGGECAILHAVEGAEDSTEAGANDLQNIHL 124 (291)
T ss_pred HHHHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHhhhhcCCCHHHhhHHhcCChHHHhccchhhhcchHHHHHHHHhcCC
Confidence 3567888999988877888888777666677644322111 0 00111011 11111221122
Q ss_pred h-CCcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEecCCC
Q 048725 149 S-GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVP 188 (661)
Q Consensus 149 t-g~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p 188 (661)
+ +...+++.+|| -.-+.+.++..|...+.++|.||+...
T Consensus 125 ~~~DvvI~IS~SG-~T~~vi~al~~Ak~~Ga~tIaIT~~~~ 164 (291)
T TIGR00274 125 TKNDVVVGIAASG-RTPYVIAGLQYARSLGALTISIACNPK 164 (291)
T ss_pred CCCCEEEEEeCCC-CcHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 2 33445555555 355677888889999999999998554
No 396
>PRK15482 transcriptional regulator MurR; Provisional
Probab=42.24 E-value=69 Score=33.16 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCccc-hHHHHHHHHHHhCCCeee
Q 048725 276 SEVHLEQIVRLISESKKPVLYVGGGCLN-SSEELRKFVELTGIPVAS 321 (661)
Q Consensus 276 ~~~~l~~~~~~L~~AkrPvIv~G~g~~~-a~~~l~~lae~lg~PV~t 321 (661)
+.+.+++++++|.+|+| |.++|.|... ....+....-++|.++..
T Consensus 121 d~~~l~~~~~~i~~A~~-I~i~G~G~S~~~A~~l~~~l~~~g~~~~~ 166 (285)
T PRK15482 121 DYARLQKIIEVISKAPF-IQITGLGGSALVGRDLSFKLMKIGYRVAC 166 (285)
T ss_pred CHHHHHHHHHHHHhCCe-eEEEEeChhHHHHHHHHHHHHhCCCeeEE
Confidence 57789999999999987 8888887653 344455555567877754
No 397
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=41.10 E-value=1.9e+02 Score=27.48 Aligned_cols=100 Identities=21% Similarity=0.240 Sum_probs=52.4
Q ss_pred cHHHHHHHHHHHCCCCEEEeccCCCcHHHH--HHHHc-----CCCCeEEccC---ChhHHHHHHHHHH--------HHhC
Q 048725 89 KGADILVEALERQGVTDVFAYPGGASMEIH--QALTR-----SNNIRNVLPR---HEQGGIFAAEGYA--------RSSG 150 (661)
Q Consensus 89 ~gad~lv~~L~~~GV~~vFg~PG~~~~~l~--~aL~~-----~~~i~~v~~~---hE~~A~~~A~Gya--------r~tg 150 (661)
+.++.|.+.+.+.+-=++||+-++.....+ ..|.. ..++..+... +|..+..--.||. ..-.
T Consensus 21 ~a~~~i~~~i~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (177)
T cd05006 21 QAAQLLAEALLNGGKILICGNGGSAADAQHFAAELVKRFEKERPGLPAIALTTDTSILTAIANDYGYEEVFSRQVEALGQ 100 (177)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhchhccCCCCCceEeccCCHHHHHHHhccCCHHHHHHHHHHHhCC
Confidence 356666676666666567776665543222 11321 1134444332 2222211111111 1112
Q ss_pred CcEEEEEccch-hhHHHHHHHHHhhhCCCcEEEEecCCC
Q 048725 151 KPGICIATSGP-GATNLVSGLADALLDSVPLVAITGQVP 188 (661)
Q Consensus 151 ~~gv~~~tsGp-G~~N~l~gl~~A~~~~iPll~ItG~~p 188 (661)
+--++++-|-. -..+.+..+..|...++|+|.||+...
T Consensus 101 ~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~ 139 (177)
T cd05006 101 PGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDG 139 (177)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 22333333433 456888999999999999999998654
No 398
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=40.81 E-value=25 Score=35.44 Aligned_cols=50 Identities=24% Similarity=0.284 Sum_probs=33.2
Q ss_pred hHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCc
Q 048725 507 GLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQH 558 (661)
Q Consensus 507 ~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g 558 (661)
++.+++|++++ +.+++..+-=.++.+-...|.++...++|+++++.|-.+
T Consensus 48 A~~~~~GAs~a--G~ra~t~ts~~Gl~lm~e~l~~a~~~~~P~V~~~~~R~g 97 (230)
T PF01855_consen 48 AMEAAIGASAA--GARAMTATSGPGLNLMAEPLYWAAGTELPIVIVVVQRAG 97 (230)
T ss_dssp HHHHHHHHHHT--T--EEEEEECCHHHHHCCCHHHHHHTT--EEEEEEEB--
T ss_pred HHHHHHHHHhc--CCceEEeecCCcccccHhHHHHHHHcCCCEEEEEEECCC
Confidence 78899999987 455555555555555455688888899999999998654
No 399
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=40.70 E-value=3.9e+02 Score=26.72 Aligned_cols=149 Identities=11% Similarity=0.067 Sum_probs=78.6
Q ss_pred CCcHHHHHHHHHHHC--CCCEEEeccCCC-------cHHHHHHHHcCCCCeEEccC----ChhHHHHHHHHHHHHhCCcE
Q 048725 87 PRKGADILVEALERQ--GVTDVFAYPGGA-------SMEIHQALTRSNNIRNVLPR----HEQGGIFAAEGYARSSGKPG 153 (661)
Q Consensus 87 ~~~gad~lv~~L~~~--GV~~vFg~PG~~-------~~~l~~aL~~~~~i~~v~~~----hE~~A~~~A~Gyar~tg~~g 153 (661)
...++...++.|.+. |-+.|.-+-|.. ...+.+.+.+++ ++.+... +...+.-.+..+-+....+-
T Consensus 109 ~~~~g~~aa~~l~~~~~g~~~i~~~~g~~~~~~~~R~~gf~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 187 (274)
T cd06311 109 NYGMGRVAGEYIATKLGGNGNIVVLRGIPTPIDNERVDAFDAAIAKYP-IKILDRQYANWNRDDAFSVMQDLLTKFPKID 187 (274)
T ss_pred cHHHHHHHHHHHHHHhCCCCeEEEEECCCCcchhHHHHHHHHHHhhCC-cEEEeccCCCCcHHHHHHHHHHHHHhCCCcC
Confidence 345677778888876 767766554432 245566666654 6654321 11222222333333334567
Q ss_pred EEEEccchhhHHHHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhh-cccccccc-cCCcCcHHHHHHHHHH
Q 048725 154 ICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTR-SITKHNYL-VLDVDDIPRIVREAFL 231 (661)
Q Consensus 154 v~~~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~-~itk~~~~-v~~~~~i~~~i~~A~~ 231 (661)
++++++..-+..++.++.++-... -+.+++++.... ..+..+ .-...... ..++......++.+.+
T Consensus 188 ai~~~~d~~a~g~~~al~~~g~~~-~~~ivg~d~~~~-----------~~~~i~~g~~~~~~~v~~~~~~~~~~~~~~~~ 255 (274)
T cd06311 188 AVWAHDDDMAVGVLAAIKQAGRTD-IKFVVGGAGSKD-----------MIKMIMDGDPLIPADVLYPPSMIASAIDLTVA 255 (274)
T ss_pred EEEECCCcHHHHHHHHHHHcCCCC-CceEEEeCCCHH-----------HHHHHHCCCCceeEEEecCHHHHHHHHHHHHH
Confidence 777877766666777776654332 244454433211 111111 10001111 2345556667777777
Q ss_pred HhhcCCCceEEEEeccc
Q 048725 232 LATSGRPGPVLIDVPKD 248 (661)
Q Consensus 232 ~a~s~~~GPV~I~iP~d 248 (661)
.+..+.++|.++.+|..
T Consensus 256 ~~~g~~~~~~~~~v~~~ 272 (274)
T cd06311 256 LFQGGMPGLGQFIIPAR 272 (274)
T ss_pred HHcCCCCCCcceeccce
Confidence 77777778888888754
No 400
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=40.54 E-value=1.1e+02 Score=26.09 Aligned_cols=73 Identities=19% Similarity=0.251 Sum_probs=44.1
Q ss_pred EEEcCCccc---hHHHHHHHHHHhCCCeeecCCC-CCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcC
Q 048725 295 LYVGGGCLN---SSEELRKFVELTGIPVASTLMG-LGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVT 370 (661)
Q Consensus 295 Iv~G~g~~~---a~~~l~~lae~lg~PV~tt~~g-kg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t 370 (661)
+-+|.|... +.+.|++.++..|+.+-....+ .|.. +++ ..+.+.++|+||.+|..-.+.
T Consensus 5 ~ac~~G~a~s~laa~~L~~aa~~~g~~~~ve~~~~~g~~---~~l------------~~~~i~~Ad~vi~~~~~~~~~-- 67 (96)
T cd05569 5 TACPTGIAHTYMAAEALEKAAKKLGWEIKVETQGSLGIE---NEL------------TAEDIAEADAVILAADVPVDD-- 67 (96)
T ss_pred EECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecCcCcc---CcC------------CHHHHhhCCEEEEecCCCCch--
Confidence 334556542 4688999999999998654333 2222 111 124578999999999764322
Q ss_pred CcccccCCCCeEEEEcCC
Q 048725 371 GKLEAFASRAKIVHIDID 388 (661)
Q Consensus 371 ~~~~~~~~~~~vi~Id~d 388 (661)
..| .+.++++++++
T Consensus 68 ---~rf-~gk~v~~~~~~ 81 (96)
T cd05569 68 ---ERF-AGKRVYEVSVA 81 (96)
T ss_pred ---hhh-CCCeEEEecHH
Confidence 122 23467766654
No 401
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=40.49 E-value=57 Score=38.45 Aligned_cols=141 Identities=14% Similarity=0.107 Sum_probs=65.4
Q ss_pred CCHHHHHHHHHHHHh-----CCCcEEEEcCCccchHHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCCcHHHH
Q 048725 275 PSEVHLEQIVRLISE-----SKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYAN 349 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~-----AkrPvIv~G~g~~~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g~~~a~ 349 (661)
..+++++.+++.|++ .++-.++.|.+.. ......|+..+|.|-+....+....+...-+ .-.+|........
T Consensus 74 SWDEAld~IA~kL~~i~~~gp~~ia~~~g~~~~--~~l~~~f~~~lGt~n~~~~~~~C~~~~~~a~-~~~~G~~~~~~~~ 150 (679)
T cd02763 74 EWEEAFSIATKRLKAARATDPKKFAFFTGRDQM--QALTGWFAGQFGTPNYAAHGGFCSVNMAAGG-LYSIGGSFWEFGG 150 (679)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCeEEEEeCCccH--HHHHHHHHHhcCCCCcCCCCCcchHHHHHHH-HHhhCCCCCCCCh
Confidence 356777777777754 2233455554432 3345667778887654322111100000000 0011211000012
Q ss_pred HhhhcCCEEEEeCCCCCCCcC---Ccccc-cCCCCeEEEEcCCchhhccCCCCcceEe--ccHHHHHHHHHHHhc
Q 048725 350 YAVDKSDLLLAFGVRFDDRVT---GKLEA-FASRAKIVHIDIDSAEIGKNKQPHVSVC--ADLKLALKGINRILG 418 (661)
Q Consensus 350 ~~l~~aDlvL~vG~~~~~~~t---~~~~~-~~~~~~vi~Id~d~~~i~~~~~~~~~i~--~D~~~~L~~L~~~l~ 418 (661)
.-+++||+||.+|+....... ..+.. ....+|+|.||+........-...+.+. .|...++.-+...++
T Consensus 151 ~D~~~Ad~Ivl~G~n~~~~~~p~~~~i~~ak~~GaKlIvIDPr~t~ta~~AD~wl~irPGTD~aL~lal~~~Li~ 225 (679)
T cd02763 151 PDLEHTKYFMMIGVAEDHHSNPFKIGIQKLKRRGGKFVAVNPVRTGYAAIADEWVPIKPGTDGAFILALAHELLK 225 (679)
T ss_pred hHHHhCCEEEEECCCCcccCchHHHHHHHHHhCCCcEEEEcCcCCcchHhhCeecCcCCCcHHHHHHHHHHHHHH
Confidence 346799999999985322111 11111 1246799999987665443222223332 444444433334443
No 402
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=39.89 E-value=66 Score=33.62 Aligned_cols=36 Identities=8% Similarity=0.037 Sum_probs=22.8
Q ss_pred CCCcEEEEECCcccccChHHHHHHHHcC---CCeEEEEEeCC
Q 048725 519 PDAIIVDIDGDGSFIMNVQELATIKVEK---LPIKILLLNNQ 557 (661)
Q Consensus 519 p~~~vv~i~GDGsf~~~~~eL~ta~~~~---lpv~ivV~NN~ 557 (661)
+.|-+|++.|-|+ +++.|..+.+.+ ..+.+||-||.
T Consensus 93 ~~kiavl~Sg~g~---nl~al~~~~~~~~l~~~i~~visn~~ 131 (289)
T PRK13010 93 RPKVVIMVSKFDH---CLNDLLYRWRMGELDMDIVGIISNHP 131 (289)
T ss_pred CeEEEEEEeCCCc---cHHHHHHHHHCCCCCcEEEEEEECCh
Confidence 3456777788654 567777666543 34666666764
No 403
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=39.53 E-value=2.1e+02 Score=31.07 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCccc------hHHHHHHHHHHhC
Q 048725 276 SEVHLEQIVRLISESKKPVLYVGGGCLN------SSEELRKFVELTG 316 (661)
Q Consensus 276 ~~~~l~~~~~~L~~AkrPvIv~G~g~~~------a~~~l~~lae~lg 316 (661)
..+.+++++++|.++++++|+.|.|... ....+.+++..++
T Consensus 221 ~~~~i~~lA~~l~~a~~~~i~~g~g~~~~~~~~~~~~~~~~li~~l~ 267 (415)
T cd02761 221 PAETILELAERLKNAKFGVIFWGLGLLPSRGAHRNIEAAIRLVKALN 267 (415)
T ss_pred CHHHHHHHHHHHHhCCceEEEEeccccccCCccHHHHHHHHHHHHhC
Confidence 4678999999999999999999987641 2345666666665
No 404
>cd08769 DAP_dppA_2 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=39.13 E-value=8 Score=39.87 Aligned_cols=143 Identities=17% Similarity=0.125 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHCCCCEEEeccCCCc--HHHHHHHHcCCCCeEEc----------cCChhHHHHHHHHHHHHhCC-cEEEE
Q 048725 90 GADILVEALERQGVTDVFAYPGGAS--MEIHQALTRSNNIRNVL----------PRHEQGGIFAAEGYARSSGK-PGICI 156 (661)
Q Consensus 90 gad~lv~~L~~~GV~~vFg~PG~~~--~~l~~aL~~~~~i~~v~----------~~hE~~A~~~A~Gyar~tg~-~gv~~ 156 (661)
-..+.++.+.+.|.+.|.-.-+... .=+.+.|.. ..++|. ..+|..-+.+=.||.-..|. .++.
T Consensus 38 evnAaiega~~aGa~eIvV~DsHg~~~Nl~~e~L~~--~a~LI~G~prp~~Mm~Gld~s~D~v~fiGYHa~aG~~~gvl- 114 (270)
T cd08769 38 ELNAVLEELFESGFEEIVVADSHGRMDNIDYEELDP--RVSLVSGYPRPLSMMTGLDESFDAVLFIGYHAGAGTPKGIM- 114 (270)
T ss_pred HHHHHHHHHHHcCCcEEEEEcCCCCcCCCChHHCCc--ceEEEecCCCCchHhhccccCccEEEEEecCCCCCCCCCcc-
Confidence 3567889999999999888764322 123444432 344442 23443344444566554555 3544
Q ss_pred Eccchhh------------HHHHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHH
Q 048725 157 ATSGPGA------------TNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPR 224 (661)
Q Consensus 157 ~tsGpG~------------~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~ 224 (661)
.|+-.|. .-..-.-+-|-.-++||+++|||.-....-+..+..+....+-+.+.+++....+|+++.+
T Consensus 115 ~HT~s~~~~~~v~iNG~~~gE~~lNa~~Ag~~gVPV~lVsGDd~~~~ea~~~~P~~~tv~vK~~~gr~aA~~~~p~~a~~ 194 (270)
T cd08769 115 DHTYSGSTIYNIWINGKEMNETLINAAYAGEFGVPVVLVAGDSELEKEVKEETPWAVFVPTKESLSRYSAKSPSMKKVKE 194 (270)
T ss_pred ccccccCceEEEEECCEEcCHHHHHHHHHhhcCCCEEEEecCHHHHHHHHHhCCCceEEEEeeecCCCccccCCHHHHHH
Confidence 4443222 1112222334567999999999864211111111111111122223334444556777777
Q ss_pred HHHHHHHHhhc
Q 048725 225 IVREAFLLATS 235 (661)
Q Consensus 225 ~i~~A~~~a~s 235 (661)
.|+++.+.|+.
T Consensus 195 ~I~~aa~~Al~ 205 (270)
T cd08769 195 ELREAVKEALE 205 (270)
T ss_pred HHHHHHHHHHH
Confidence 88877777764
No 405
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=38.94 E-value=1.4e+02 Score=30.78 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcC-------Cc-c----chHHHHHHHHHHhCCCeeecCC
Q 048725 276 SEVHLEQIVRLISESKKPVLYVGG-------GC-L----NSSEELRKFVELTGIPVASTLM 324 (661)
Q Consensus 276 ~~~~l~~~~~~L~~AkrPvIv~G~-------g~-~----~a~~~l~~lae~lg~PV~tt~~ 324 (661)
+++.+.+.++.|+++..+++..|. .. . .....++++++.+|+|++++..
T Consensus 39 ~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~ 99 (266)
T PRK13398 39 SEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVM 99 (266)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeC
Confidence 577888889999999889888882 11 1 2346789999999999999864
No 406
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=38.82 E-value=26 Score=38.38 Aligned_cols=143 Identities=17% Similarity=0.196 Sum_probs=68.2
Q ss_pred CCHHHHHHHHHHHHhC---CCc--EEE--EcCCc-cchHHHHHHHHHHhCCCeeecCCCCCCCCCCCC-CCCcc--c-CC
Q 048725 275 PSEVHLEQIVRLISES---KKP--VLY--VGGGC-LNSSEELRKFVELTGIPVASTLMGLGSFPGTDE-LSLQM--L-GM 342 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~A---krP--vIv--~G~g~-~~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hp-l~lg~--~-G~ 342 (661)
..+++++.+++.|++. ..| +++ .|+.. ......+.+|++.+|-|-+......+..+..+. ..+|. . +.
T Consensus 21 sWdeAl~~ia~~l~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 100 (432)
T PF00384_consen 21 SWDEALDEIAEKLKEIIDKYGPDSIAFFGSGGGTSNEEWYLLQRFARALGSPNTNNHGSQCDTCMASAAEAFGGDFVGGP 100 (432)
T ss_dssp -HHHHHHHHHHHHHHHHHHCTGGGEEEEEETTTSSHHHHHHHHHHHHHTTHHEEEEEEEGGGCTTHHHHHHHSSHSHTSS
T ss_pred cHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhheecccccCc
Confidence 4678888888887762 234 442 33333 234556789999999874332111111100000 00111 1 11
Q ss_pred CCcHHHHHhhhcCCEEEEeCCCCCCCcCCc----cc-ccCCCCeEEEEcCCchhhccCCCCcceEe--ccHHHHHHHHHH
Q 048725 343 HGTVYANYAVDKSDLLLAFGVRFDDRVTGK----LE-AFASRAKIVHIDIDSAEIGKNKQPHVSVC--ADLKLALKGINR 415 (661)
Q Consensus 343 ~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~----~~-~~~~~~~vi~Id~d~~~i~~~~~~~~~i~--~D~~~~L~~L~~ 415 (661)
... ...+-+.++|+||.+|+......... .. ......|+|.||+........-...+.+. .|...++.-+..
T Consensus 101 ~~~-~~~~D~~~ad~il~~G~n~~~~~~~~~~~~~~~~~~~g~k~v~vdP~~t~~a~~ad~~i~i~PGtD~al~~a~~~~ 179 (432)
T PF00384_consen 101 AFG-NPLEDIENADVILIWGANPAESHPHLNARFRKAARKRGAKLVVVDPRRTPTAAKADEWIPIRPGTDAALALAMAHV 179 (432)
T ss_dssp SCC-SHHHGGGH-SEEEEES--HHHHSHHHHHHHHHHHHHCTSEEEEEESSB-HHGGGTSEEEEE-TTTHHHHHHHHHHH
T ss_pred ccc-cccceeeccceEEEcccCccccccccccccccccccCCcceEEEEeccchhhhhccccccccccccHHhhcccccc
Confidence 111 11235789999999998864332111 11 22245899999998876544333334332 444443443334
Q ss_pred Hhc
Q 048725 416 ILG 418 (661)
Q Consensus 416 ~l~ 418 (661)
.+.
T Consensus 180 ii~ 182 (432)
T PF00384_consen 180 IID 182 (432)
T ss_dssp HHH
T ss_pred eee
Confidence 444
No 407
>PF00766 ETF_alpha: Electron transfer flavoprotein FAD-binding domain; InterPro: IPR014731 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the C-terminal domain of the alpha subunit of both Group I and Group II ETFs.; PDB: 1O96_D 3CLR_D 1O97_D 3CLT_D 3CLU_D 3CLS_D 2A1U_A 2A1T_R 1EFV_A 1EFP_C ....
Probab=38.73 E-value=32 Score=28.95 Aligned_cols=61 Identities=23% Similarity=0.348 Sum_probs=35.3
Q ss_pred cEEEEcCCcc--chHHHHHHHHHHhCCCeeecC--CCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCC
Q 048725 293 PVLYVGGGCL--NSSEELRKFVELTGIPVASTL--MGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVR 364 (661)
Q Consensus 293 PvIv~G~g~~--~a~~~l~~lae~lg~PV~tt~--~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~ 364 (661)
-|+-+|.|.. ...+.+.+||+++|+-|-+|- --.|.+|.+ ...|. .|. .-.+++.|.+|.+
T Consensus 9 ~VV~~GrG~~~~e~~~l~~~LA~~lga~vg~SRp~vd~gw~p~~--~qIG~---sG~------~v~P~lyia~GIS 73 (86)
T PF00766_consen 9 VVVAGGRGVGSKENFELIEELAEALGAAVGASRPVVDAGWIPRE--RQIGQ---SGK------TVAPKLYIAFGIS 73 (86)
T ss_dssp EEEEE-GGG-STGGCHHHHHHHHHHT-EEEE-HHHHHTTSS-GG--GBBST---TSB--------T-SEEEEES--
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhCCchhccHHHHhCCCCchh--hhcCC---CCc------EEeeeeeEeecch
Confidence 4555566664 456889999999999997762 236777654 33443 332 2378999999965
No 408
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=37.69 E-value=88 Score=32.43 Aligned_cols=96 Identities=20% Similarity=0.202 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCcc-chHHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCCcHHHHHhhh
Q 048725 275 PSEVHLEQIVRLISESKKPVLYVGGGCL-NSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVD 353 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~AkrPvIv~G~g~~-~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~ 353 (661)
-+++.+++++++|.+|+|.. +.|.|.. .....+..-..++|.++.... +.|- .......+.
T Consensus 115 l~~~~l~~av~~L~~A~rI~-~~G~g~S~~vA~~~~~~l~~ig~~~~~~~-------d~~~----------~~~~~~~~~ 176 (281)
T COG1737 115 LDEEALERAVELLAKARRIY-FFGLGSSGLVASDLAYKLMRIGLNVVALS-------DTHG----------QLMQLALLT 176 (281)
T ss_pred cCHHHHHHHHHHHHcCCeEE-EEEechhHHHHHHHHHHHHHcCCceeEec-------chHH----------HHHHHHhCC
Confidence 37889999999999998754 4555554 345667777778888886432 1111 111223467
Q ss_pred cCCEEEEeCCCCCCCcCCc-cc-ccCCCCeEEEEcCC
Q 048725 354 KSDLLLAFGVRFDDRVTGK-LE-AFASRAKIVHIDID 388 (661)
Q Consensus 354 ~aDlvL~vG~~~~~~~t~~-~~-~~~~~~~vi~Id~d 388 (661)
+-|++|++..+-....+-. .+ .-..++++|.|...
T Consensus 177 ~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~ 213 (281)
T COG1737 177 PGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDS 213 (281)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCC
Confidence 8899998864421111100 01 11235677777654
No 409
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=37.46 E-value=49 Score=36.15 Aligned_cols=47 Identities=23% Similarity=0.274 Sum_probs=36.6
Q ss_pred hHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEe
Q 048725 507 GLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLN 555 (661)
Q Consensus 507 ~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~N 555 (661)
++.+|+||+++ +.++...+==.||..-...|..+.-.++|+++++.|
T Consensus 61 A~~~aiGAs~a--GaRa~TaTSg~Gl~lm~E~l~~aa~~~lPiVi~~~~ 107 (390)
T PRK08366 61 AMAACIGASAA--GARAFTATSAQGLALMHEMLHWAAGARLPIVMVDVN 107 (390)
T ss_pred HHHHHHHHHhh--CCCeEeeeCcccHHHHhhHHHHHHhcCCCEEEEEec
Confidence 78899999998 556666666666766667788889899998888863
No 410
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=37.05 E-value=98 Score=35.57 Aligned_cols=104 Identities=20% Similarity=0.201 Sum_probs=58.2
Q ss_pred HHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEe---------cCCCCcccCCC----CCCCCCHHHHh
Q 048725 140 FAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAIT---------GQVPRRMIGTD----AFQETPIVEVT 206 (661)
Q Consensus 140 ~~A~Gyar~tg~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~It---------G~~p~~~~g~~----~~q~~~~~~~~ 206 (661)
..|.|.+..+.+..+++.-=|+=.=+-+++|.+|-+++.+++++. |++|..-.|.. ..-+++..++.
T Consensus 435 g~a~g~~~~~~k~~va~iGDsTF~HsGi~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~~~~~g~~~~~i~iee~~ 514 (640)
T COG4231 435 GIAGGLSFASTKKIVAVIGDSTFFHSGILALINAVYNKANILVVVLDNRTTAMTGGQPHPGTGVAAEGTKSTAIVIEEVV 514 (640)
T ss_pred hhccccccccCCceEEEeccccccccCcHHHHHHHhcCCCeEEEEEeccchhccCCCCCCCcccccCCCccceeEhhHhh
Confidence 445566655556666654333333344888999999999988764 55554322211 12345666777
Q ss_pred hcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEe
Q 048725 207 RSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDV 245 (661)
Q Consensus 207 ~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~i 245 (661)
+.+-...++.-++-++.+ +.++++.|+.-+ ||..|-.
T Consensus 515 r~~Gv~~v~~vdp~~~~~-~~~~~keale~~-gpsViia 551 (640)
T COG4231 515 RAMGVEDVETVDPYDVKE-LSEAIKEALEVP-GPSVIIA 551 (640)
T ss_pred hhcCceeeeccCCcchHH-HHHHHHHHhcCC-CceEEEE
Confidence 776544444434555443 334555555544 7666544
No 411
>cd00281 DAP_dppA Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacterized
Probab=36.90 E-value=17 Score=37.27 Aligned_cols=142 Identities=15% Similarity=0.092 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHCCCCEEEeccCCC--cHHHHHHHHcCCCCeEEcc----------CChhHHHHHHHHH-HHHhCCcEEEE
Q 048725 90 GADILVEALERQGVTDVFAYPGGA--SMEIHQALTRSNNIRNVLP----------RHEQGGIFAAEGY-ARSSGKPGICI 156 (661)
Q Consensus 90 gad~lv~~L~~~GV~~vFg~PG~~--~~~l~~aL~~~~~i~~v~~----------~hE~~A~~~A~Gy-ar~tg~~gv~~ 156 (661)
-..+.++.+.+.|.+.|.-.-+.. ..=+.+.|. +..++|.- .+|..-+.+=.|| ||+..+++++
T Consensus 38 evnAaiega~~aGa~eVvVnDsHg~~~Nll~e~L~--~~a~LI~G~prp~~Mm~Gld~~~D~v~fiGYHa~ag~~~gvL- 114 (265)
T cd00281 38 AVIAACEGSLAAGATQVLVKDSHDSGRNLIPERLP--EPVQLISGSGHPYCMVQGLDRSFDALLFIGYHARAGTAANVM- 114 (265)
T ss_pred HHHHHHHHHHHcCCcEEEEEcCCCCccccChhHCC--cCEEEEecCCCcchhhhccccCccEEEEEecCCcccCCCCcc-
Confidence 356788899999999999877332 222444443 23555522 1333333334464 3333224553
Q ss_pred Eccchh-hHH----------HHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHH
Q 048725 157 ATSGPG-ATN----------LVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRI 225 (661)
Q Consensus 157 ~tsGpG-~~N----------~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~ 225 (661)
.|+--| ..+ ..-.-+-|-.-++||+++|||.-....-+..+..+....+-+.+..++....+|++..+.
T Consensus 115 ~HT~~~~~~~v~iNG~~~gE~~lna~~Ag~~gVPV~lvsGDd~~~~ea~~~~P~~~tv~vK~~~gr~aa~~~~p~~a~~~ 194 (265)
T cd00281 115 AHSYTTEVSQIRINGQAIAEFHLNALTAGYYGVPVVMVAGDAEVCKEAKAYDAQVETVVTKKGMGRFSVKAPSPQKVLRA 194 (265)
T ss_pred ccccccceEEEEECCEEcCHHHHHHHHHhhcCCCEEEEecCHHHHHHHHHhCCCceEEEEeeeeCCCccccCCHHHHHHH
Confidence 333111 111 111122344668999999998653211111111111111222233344455677888888
Q ss_pred HHHHHHHhh
Q 048725 226 VREAFLLAT 234 (661)
Q Consensus 226 i~~A~~~a~ 234 (661)
|+++.+.|+
T Consensus 195 I~~~a~~Al 203 (265)
T cd00281 195 IREGTEGSL 203 (265)
T ss_pred HHHHHHHHH
Confidence 888887775
No 412
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=36.85 E-value=63 Score=38.92 Aligned_cols=113 Identities=16% Similarity=0.090 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCC-cc-chHHHHHHHHH-HhCCCeeecCCCCCCCCCCCCCCCc--ccCCCCcHHHH
Q 048725 275 PSEVHLEQIVRLISESKKPVLYVGGG-CL-NSSEELRKFVE-LTGIPVASTLMGLGSFPGTDELSLQ--MLGMHGTVYAN 349 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~AkrPvIv~G~g-~~-~a~~~l~~lae-~lg~PV~tt~~gkg~~p~~hpl~lg--~~G~~g~~~a~ 349 (661)
..+++++.+++.|++.+..+-+.+++ .. ...-.+.+|++ .+|.+-+.... +. ......-++. ..|...... -
T Consensus 295 SWdEAld~ia~kL~~i~~~ia~~~s~~~t~Ee~y~~~kl~r~~lgt~nid~~~-r~-~~~~~~~~~~~~~~g~~~~~~-~ 371 (797)
T PRK07860 295 SWSEALAVAARGLAAARGRVGVLVGGRLTVEDAYAYAKFARVALGTNDIDFRA-RP-HSAEEADFLAARVAGRGLGVT-Y 371 (797)
T ss_pred CHHHHHHHHHHHHHhhhccEEEEeCCCCCHHHHHHHHHHHHHhcCCCcccccc-cc-ccchHHHHHHhhccCCCCCCC-H
Confidence 45788888888888876654444433 32 22334577776 57765442111 00 0000000000 011110111 1
Q ss_pred HhhhcCCEEEEeCCCCCCCcCC---cc-ccc-CCCCeEEEEcCCch
Q 048725 350 YAVDKSDLLLAFGVRFDDRVTG---KL-EAF-ASRAKIVHIDIDSA 390 (661)
Q Consensus 350 ~~l~~aDlvL~vG~~~~~~~t~---~~-~~~-~~~~~vi~Id~d~~ 390 (661)
+-++++|+||++|+...+.... .+ ... ..++++|.||+...
T Consensus 372 ~Die~ad~ill~G~N~~~~~P~~~~ri~~a~k~~GakiivIDPr~t 417 (797)
T PRK07860 372 ADLEKAPAVLLVGFEPEEESPIVFLRLRKAARKHGLKVYSIAPFAT 417 (797)
T ss_pred HHHHhCCEEEEEeCChhhhhHHHHHHHHHHHHhCCCEEEEECCCCc
Confidence 2367999999999987543221 12 111 24679999998654
No 413
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=36.44 E-value=2.4e+02 Score=27.37 Aligned_cols=87 Identities=14% Similarity=0.243 Sum_probs=48.4
Q ss_pred cHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEE-Eccc--hhhHH
Q 048725 89 KGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICI-ATSG--PGATN 165 (661)
Q Consensus 89 ~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~-~tsG--pG~~N 165 (661)
.-++.+++.+++.||+.|+.+-|-.....+ ..+ ++..+.+..... ..-+..| +-+ .-.| .|.+.
T Consensus 34 e~a~~vld~a~~~gv~~iitLgG~~~~~~~----trp--~V~~~at~~el~----~~l~~~g---~~~~~~~g~i~G~~g 100 (188)
T TIGR00162 34 ELVNAIIDVAKKYGARMIYTLGGYGVGKLV----EEP--YVYGAATSPELV----EELKEHG---VKFREPGGGIIGASG 100 (188)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCcCCCCC----CCC--ceEEEeCCHHHH----HHHHhcC---CeeecCCCccccHHH
Confidence 468999999999999999999985442111 122 233333322221 1111111 111 1111 13333
Q ss_pred HHHHHHHhhhCCCcEEEEecCCCCc
Q 048725 166 LVSGLADALLDSVPLVAITGQVPRR 190 (661)
Q Consensus 166 ~l~gl~~A~~~~iPll~ItG~~p~~ 190 (661)
++ +..|...++|-+.+.+..|..
T Consensus 101 lL--l~~a~~~gi~ai~L~~e~p~y 123 (188)
T TIGR00162 101 LL--LGVSELEGIPGACLMGETPGY 123 (188)
T ss_pred HH--HHHHHHCCCCeEEEEEeCCCC
Confidence 33 345778899999999988753
No 414
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=36.28 E-value=1.1e+02 Score=29.88 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=19.7
Q ss_pred CcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCC
Q 048725 521 AIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQ 557 (661)
Q Consensus 521 ~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~ 557 (661)
|.+|.+.|.|+.+-.+-+-+.....+..+..||-|+.
T Consensus 2 riail~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~ 38 (190)
T TIGR00639 2 RIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNKP 38 (190)
T ss_pred eEEEEEcCCChhHHHHHHHHHcCCCCceEEEEEECCc
Confidence 3567788888877654443332222223444455653
No 415
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=36.25 E-value=1.3e+02 Score=28.64 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCccc-hHHHHHHHHHHhCCCeee
Q 048725 276 SEVHLEQIVRLISESKKPVLYVGGGCLN-SSEELRKFVELTGIPVAS 321 (661)
Q Consensus 276 ~~~~l~~~~~~L~~AkrPvIv~G~g~~~-a~~~l~~lae~lg~PV~t 321 (661)
+.+.+++++++|.+++| |+++|.|... ....+.....++|.++..
T Consensus 19 ~~~~l~~~~~~i~~a~~-I~i~G~G~S~~~A~~~~~~l~~~g~~~~~ 64 (179)
T cd05005 19 DEEELDKLISAILNAKR-IFVYGAGRSGLVAKAFAMRLMHLGLNVYV 64 (179)
T ss_pred CHHHHHHHHHHHHhCCe-EEEEecChhHHHHHHHHHHHHhCCCeEEE
Confidence 67889999999999966 8888877642 233333333456887765
No 416
>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins. The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=35.79 E-value=1.2e+02 Score=36.30 Aligned_cols=68 Identities=12% Similarity=0.150 Sum_probs=39.4
Q ss_pred hhhcCCEEEEeCCCCCCCcC-Ccccc----cCCCCeEEEEcCCchhhccCCCCcceEe--ccHHHHHHHHHHHhc
Q 048725 351 AVDKSDLLLAFGVRFDDRVT-GKLEA----FASRAKIVHIDIDSAEIGKNKQPHVSVC--ADLKLALKGINRILG 418 (661)
Q Consensus 351 ~l~~aDlvL~vG~~~~~~~t-~~~~~----~~~~~~vi~Id~d~~~i~~~~~~~~~i~--~D~~~~L~~L~~~l~ 418 (661)
-+.+||+||++|+.+..... ..+.. -....|+|+||+........-...+.+. .|....+..+...++
T Consensus 170 D~~~ad~Il~~G~Np~~s~~~~~~~~~~~ar~~GaKlIvVDPr~t~ta~~AD~wlpirPGTD~AL~lam~~~Ii~ 244 (760)
T cd02760 170 DTPLANYVISFGSNVEASGGPCAVTRHADARVRGYKRVQVEPHLSVTGACSAEWVPIRPKTDPAFMFAMIHVMVH 244 (760)
T ss_pred hHhcCCEEEEECCCchHhcCcHHHHHHHHHHHcCCeEEEEcCCCCcchhhcCeEeCcCCCcHHHHHHHHHHHHHh
Confidence 46799999999998742211 11111 1245799999998877665433333343 455444444444444
No 417
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=35.71 E-value=40 Score=30.51 Aligned_cols=48 Identities=21% Similarity=0.281 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCccchHHHHHHHHHHhCCCeeecCC
Q 048725 276 SEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLM 324 (661)
Q Consensus 276 ~~~~l~~~~~~L~~AkrPvIv~G~g~~~a~~~l~~lae~lg~PV~tt~~ 324 (661)
+++...+..+.+-+.+-|.|++-.|. ...+++.++|++.++|++.|..
T Consensus 66 ~~~~r~~~l~~l~~~~~P~iIvt~~~-~~p~~l~e~a~~~~ipll~t~~ 113 (127)
T PF02603_consen 66 DEEERKERLEKLFSYNPPCIIVTRGL-EPPPELIELAEKYNIPLLRTPL 113 (127)
T ss_dssp -HHHHCCHHHHHCTTT-S-EEEETTT----HHHHHHHHHCT--EEEESS
T ss_pred CHHHHHHHHHHHhCCCCCEEEEECcC-CCCHHHHHHHHHhCCcEEEcCC
Confidence 34455566666767788988887665 4468899999999999998754
No 418
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=35.70 E-value=2.1e+02 Score=29.37 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=22.1
Q ss_pred CCcEEEEEccchhhHHHHHHHHH---hhhCCCcEEEEec
Q 048725 150 GKPGICIATSGPGATNLVSGLAD---ALLDSVPLVAITG 185 (661)
Q Consensus 150 g~~gv~~~tsGpG~~N~l~gl~~---A~~~~iPll~ItG 185 (661)
+...+++.||+-++.|++..+.+ .+..+.++++|+-
T Consensus 189 ~~~d~i~ftS~sav~~f~~~l~~~~~~~l~~~~~v~is~ 227 (266)
T PRK08811 189 APRSVLALSSAEALTLILQQLPDALRRALQQRPVVASSD 227 (266)
T ss_pred CCCCEEEEChHHHHHHHHHHhhhhHHHHHhCCCEEEeCH
Confidence 44566667777777777655533 2456667666654
No 419
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=34.46 E-value=3.3e+02 Score=25.58 Aligned_cols=85 Identities=14% Similarity=0.218 Sum_probs=54.3
Q ss_pred HHHHHhhhcCCCcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhh-CCCCcEEEEECCcc----c
Q 048725 458 AIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVA-NPDAIIVDIDGDGS----F 532 (661)
Q Consensus 458 ~~~~l~~~l~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala-~p~~~vv~i~GDGs----f 532 (661)
+.+.-.++++++..|+.|.|+......+++.-..+-.++++ +++.|. .+. +++-.++++-|.-. .
T Consensus 9 IA~~A~~~I~~~~~Ifld~GtT~~~la~~L~~~~~ltVvTn--------sl~ia~--~l~~~~~~~vi~~GG~~~~~~~~ 78 (161)
T PF00455_consen 9 IARKAASLIEDGDTIFLDSGTTTLELAKYLPDKKNLTVVTN--------SLPIAN--ELSENPNIEVILLGGEVNPKSLS 78 (161)
T ss_pred HHHHHHHhCCCCCEEEEECchHHHHHHHHhhcCCceEEEEC--------CHHHHH--HHHhcCceEEEEeCCEEEcCCCc
Confidence 34444566777777888999988888898886667777776 344443 233 35667887777322 2
Q ss_pred ccChHHHHHHHHcCCCeEEE
Q 048725 533 IMNVQELATIKVEKLPIKIL 552 (661)
Q Consensus 533 ~~~~~eL~ta~~~~lpv~iv 552 (661)
+.+...+....+++.+..++
T Consensus 79 ~~G~~a~~~l~~~~~d~afi 98 (161)
T PF00455_consen 79 FVGPIALEALRQFRFDKAFI 98 (161)
T ss_pred EECchHHHHHHhhccceEEe
Confidence 22344566666777766554
No 420
>PRK15488 thiosulfate reductase PhsA; Provisional
Probab=34.24 E-value=91 Score=37.30 Aligned_cols=138 Identities=16% Similarity=0.176 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHHhCC-----CcEEEEcCCccchHHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCCcHHHH
Q 048725 275 PSEVHLEQIVRLISESK-----KPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYAN 349 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~Ak-----rPvIv~G~g~~~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g~~~a~ 349 (661)
..+++++.+++.|++.+ .-+.+.++ .......+.+|+..+|.|-+... +.-.....+--..-.+|. . ..
T Consensus 118 SWdEAl~~ia~~l~~i~~~~G~~~i~~~~~-~~~~~~~~~~~~~~~Gs~n~~~~-~~~c~~~~~~~~~~~~G~--~--~~ 191 (759)
T PRK15488 118 SWDEAYQEIAAKLNAIKQQHGPESVAFSSK-SGSLSSHLFHLATAFGSPNTFTH-ASTCPAGYAIAAKVMFGG--K--LK 191 (759)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCceEEeecC-CCcHHHHHHHHHHHcCCCCCCCc-cccccchhhhhHHhhcCC--C--cc
Confidence 35778888888775432 22333332 11223356788888887633211 111111000000001121 1 11
Q ss_pred HhhhcCCEEEEeCCCCCCCc-CCc---c-ccc-CCCCeEEEEcCCchhhccCCCCcceEe--ccHHHHHHHHHHHhc
Q 048725 350 YAVDKSDLLLAFGVRFDDRV-TGK---L-EAF-ASRAKIVHIDIDSAEIGKNKQPHVSVC--ADLKLALKGINRILG 418 (661)
Q Consensus 350 ~~l~~aDlvL~vG~~~~~~~-t~~---~-~~~-~~~~~vi~Id~d~~~i~~~~~~~~~i~--~D~~~~L~~L~~~l~ 418 (661)
.-+++||+||.+|+...... ... + ... .+..++|.||+........-...+.+. .|...++.-+...++
T Consensus 192 ~D~~~ad~Il~~G~N~~~~~~~~~~~~~~~a~~~~G~kiivIDPr~s~ta~~Ad~~l~i~PGtD~al~~al~~~ii~ 268 (759)
T PRK15488 192 RDLANSKYIINFGHNLYEGINMSDTRGLMTAQMEKGAKLVVFEPRFSVVASKADEWHAIRPGTDLAVVLALCHVLIE 268 (759)
T ss_pred CCHhhCcEEEEeccChHhcCCcHHHHHHHHHHHhCCCEEEEECCCCCcchhhCCeeeccCCCcHHHHHHHHHHHHHH
Confidence 24689999999998864321 111 1 122 346799999998876654322233332 454444433333333
No 421
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=33.88 E-value=1.4e+02 Score=33.60 Aligned_cols=90 Identities=20% Similarity=0.309 Sum_probs=59.0
Q ss_pred ChHHHHHHHhhh--------cCCCcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEE
Q 048725 454 PPQYAIQVLDEL--------TNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVD 525 (661)
Q Consensus 454 ~~~~~~~~l~~~--------l~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~ 525 (661)
.+..++..+... +.+.-++++..++.- .-.|-+|+++...|-||++|.-+. ...+..|.+
T Consensus 234 e~~~I~~~v~~~~~~~~~~~l~gkkvLITaGpT~E--------~IDpVR~ItN~SSGkmG~alA~aa----~~~GA~Vtl 301 (475)
T PRK13982 234 EPLEIAAAAEALLRPPQPKPLAGRRVLITAGPTHE--------PIDPVRYIANRSSGKQGFAIAAAA----AAAGAEVTL 301 (475)
T ss_pred CHHHHHHHHHHHHhhccccccCCCEEEEecCCccc--------cCCcceeeCCCCchHHHHHHHHHH----HHCCCcEEE
Confidence 456665555433 344456666665422 135889999999898888776654 334677999
Q ss_pred EECCcccc----------cChHHHHHHHHcCCCeEEEEEe
Q 048725 526 IDGDGSFI----------MNVQELATIKVEKLPIKILLLN 555 (661)
Q Consensus 526 i~GDGsf~----------~~~~eL~ta~~~~lpv~ivV~N 555 (661)
+.|-.++- -+..|+..+++..++.-++|+.
T Consensus 302 I~Gp~~~~~p~~v~~i~V~ta~eM~~av~~~~~~Di~I~a 341 (475)
T PRK13982 302 ISGPVDLADPQGVKVIHVESARQMLAAVEAALPADIAIFA 341 (475)
T ss_pred EeCCcCCCCCCCceEEEecCHHHHHHHHHhhCCCCEEEEe
Confidence 99977641 2468888888776765555553
No 422
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=33.87 E-value=93 Score=36.04 Aligned_cols=92 Identities=18% Similarity=0.212 Sum_probs=51.7
Q ss_pred EEEEECCcccccChHHHHHHHHcCCC------eEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHH
Q 048725 523 IVDIDGDGSFIMNVQELATIKVEKLP------IKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFA 596 (661)
Q Consensus 523 vv~i~GDGsf~~~~~eL~ta~~~~lp------v~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A 596 (661)
-|++=||++|.--.--.+|.--..|| -+.||.||+- |.+ .++|+... . |=-..+|
T Consensus 404 ~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQI-gFT--------TDPR~aRS--s--------pYcTDva 464 (1017)
T KOG0450|consen 404 GILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQI-GFT--------TDPRFARS--S--------PYCTDVA 464 (1017)
T ss_pred EEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEcccc-ccc--------cCcccccC--C--------CCchhHH
Confidence 57788999995321112222222233 6778999983 332 22222111 1 1123578
Q ss_pred hHcCCCEeee--CCHHHHHHHHHHHHh----CCCcEEEEEEeC
Q 048725 597 EACGIPGAQV--TRKADLRAAIQTMLD----TPGPYLLDVIFP 633 (661)
Q Consensus 597 ~a~G~~~~~v--~~~~el~~al~~a~~----~~gp~lIeV~~~ 633 (661)
++.+++-..| ++++.+--+.+-|.+ -.+-+|||+++-
T Consensus 465 r~v~aPIFHVNaDD~EAV~~vc~vAAeWR~tFh~DvVVDlVcy 507 (1017)
T KOG0450|consen 465 RVVNAPIFHVNADDPEAVMHVCKVAAEWRKTFHKDVVVDLVCY 507 (1017)
T ss_pred HHhCCCeEeecCCChHHHHHHHHHHHHHHHHhccCeEEEEEEE
Confidence 8898887655 566666555554433 357789999885
No 423
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=33.05 E-value=49 Score=30.09 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=22.0
Q ss_pred HHHHHHHCCCCEEEeccCCCcHHHHHHHH
Q 048725 94 LVEALERQGVTDVFAYPGGASMEIHQALT 122 (661)
Q Consensus 94 lv~~L~~~GV~~vFg~PG~~~~~l~~aL~ 122 (661)
-.+.|++.||+.+|+ ||+....+.+.|.
T Consensus 100 ~~~~L~~~Gv~~vf~-pgt~~~~i~~~l~ 127 (128)
T cd02072 100 VEKRFKEMGFDRVFA-PGTPPEEAIADLK 127 (128)
T ss_pred HHHHHHHcCCCEEEC-cCCCHHHHHHHHh
Confidence 557788899998888 7887777777664
No 424
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=32.69 E-value=1.8e+02 Score=25.85 Aligned_cols=81 Identities=20% Similarity=0.315 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHhCCCeeecCCC-CCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCC-CCCcCCcccccCCCCe
Q 048725 304 SSEELRKFVELTGIPVASTLMG-LGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRF-DDRVTGKLEAFASRAK 381 (661)
Q Consensus 304 a~~~l~~lae~lg~PV~tt~~g-kg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~-~~~~t~~~~~~~~~~~ 381 (661)
+.+.|++.+++.|+.+.....| .|.. ++| ..+-++++|+||.+|..- .+. ..| .+.+
T Consensus 21 AAeaL~kAA~~~G~~i~VE~qg~~g~~---~~l------------t~~~i~~Ad~VIia~d~~~~~~-----~rF-~gk~ 79 (114)
T PRK10427 21 AAERLEKLCQLEKWGVKIETQGALGTE---NRL------------TDEDIRRADVVLLITDIELAGA-----ERF-EHCR 79 (114)
T ss_pred HHHHHHHHHHHCCCeEEEEecCCcCcC---CCC------------CHHHHHhCCEEEEEecCCCCch-----hhh-CCCe
Confidence 4688999999999999664433 3322 222 134578999999999774 221 122 2346
Q ss_pred EEEEcCCchhhccCCCCcceEeccHHHHHHHHHHHh
Q 048725 382 IVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRIL 417 (661)
Q Consensus 382 vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 417 (661)
+++++++.. ..|+..+|+...+.+
T Consensus 80 v~~~s~~~a------------i~d~~~vl~~a~~~~ 103 (114)
T PRK10427 80 YVQCSIYAF------------LREPQRVMSAVRKVL 103 (114)
T ss_pred EEEecHHHH------------HHHHHHHHHHHHHHH
Confidence 777765543 235666666665554
No 425
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=32.57 E-value=3e+02 Score=31.93 Aligned_cols=115 Identities=17% Similarity=0.082 Sum_probs=79.9
Q ss_pred eEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEecCCCCcccCCC--CCCCCCHHHH
Q 048725 128 RNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTD--AFQETPIVEV 205 (661)
Q Consensus 128 ~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~~--~~q~~~~~~~ 205 (661)
.+..-..|.+.+.++-|.+.-.|- -..-.|...=.--+-+++--|...++|++.+-...... +|.+ .+|-++|...
T Consensus 404 ~i~~GVREf~M~AimNGialhGg~-~pyggTFlvFsdY~r~AiRlaALm~l~~~~V~THDSIg-vGEDGPTHqPiEqLa~ 481 (663)
T COG0021 404 YIHFGVREFAMAAIMNGIALHGGF-IPYGGTFLVFSDYARPAVRLAALMGLPVIYVFTHDSIG-VGEDGPTHQPVEQLAS 481 (663)
T ss_pred eeEEeeHHHHHHHHHHhHHHhcCc-eeecceehhhHhhhhHHHHHHHhcCCCeEEEEecCcee-cCCCCCCCCcHHHHHH
Confidence 345557899999999999987772 22222333334455688888999999999886544322 2332 4688888888
Q ss_pred hhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 048725 206 TRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPK 247 (661)
Q Consensus 206 ~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~ 247 (661)
+|.+-.. .|-+|.|..+ ...||+.|.....||+.|-+.+
T Consensus 482 LRaiPN~--~V~RPaD~~E-t~~aw~~Al~~~~gPt~LiltR 520 (663)
T COG0021 482 LRAIPNL--SVIRPADANE-TAAAWKYALERKDGPTALILTR 520 (663)
T ss_pred hhccCCc--eeEecCChHH-HHHHHHHHHhcCCCCeEEEEec
Confidence 8887543 3446666444 5678999998778999998864
No 426
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=32.54 E-value=56 Score=34.05 Aligned_cols=37 Identities=16% Similarity=0.361 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCccchHHHHHHHHHHhCCCeeec
Q 048725 276 SEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVAST 322 (661)
Q Consensus 276 ~~~~l~~~~~~L~~AkrPvIv~G~g~~~a~~~l~~lae~lg~PV~tt 322 (661)
++.+++++.++|+++++.|++.|.|.... .|||-+=.
T Consensus 5 ~~~~l~~l~~~i~~~~~ivvlTGAGiS~~----------SGIPdFR~ 41 (285)
T PRK05333 5 DPAALDALQDFVERHPRLFVLTGAGISTD----------SGIPDYRD 41 (285)
T ss_pred cHHHHHHHHHHHHhCCcEEEEeCCccccc----------cCCCcccC
Confidence 67889999999999999999999997532 57776643
No 427
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=32.43 E-value=2.5e+02 Score=29.86 Aligned_cols=85 Identities=19% Similarity=0.262 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCccc------hHHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCCcHHHH
Q 048725 276 SEVHLEQIVRLISESKKPVLYVGGGCLN------SSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYAN 349 (661)
Q Consensus 276 ~~~~l~~~~~~L~~AkrPvIv~G~g~~~------a~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g~~~a~ 349 (661)
..+.++++++++.++++++++.|.+... ....+..|+..+|-- -..|.+.+...+|++.- .......
T Consensus 229 ~~~~i~~la~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~l~~l~G~~---~~~g~~~~~~~np~~~~----~~~~~~~ 301 (374)
T cd00368 229 PAETIRALAREFAAAKRAVILWGMGLTQHTNGTQNVRAIANLAALTGNI---GRPGGGLGPGGNPLVSA----PDANRVR 301 (374)
T ss_pred CHHHHHHHHHHHHhCCCeEEEeccccceecccHHHHHHHHHHHHHhCCC---CCCCCcCCCCCChhhcC----CCHHHHH
Confidence 3567889999999999999999987731 223344555555431 01123333334443211 1122344
Q ss_pred HhhhcCCEEEEeCCCCCC
Q 048725 350 YAVDKSDLLLAFGVRFDD 367 (661)
Q Consensus 350 ~~l~~aDlvL~vG~~~~~ 367 (661)
+++++.|++++++..+++
T Consensus 302 ~al~~~~~~V~~d~~~~e 319 (374)
T cd00368 302 AALKKLDFVVVIDIFMTE 319 (374)
T ss_pred HHHhCCCeEEEEecCCCc
Confidence 678899999999877754
No 428
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=32.41 E-value=1.8e+02 Score=30.45 Aligned_cols=102 Identities=12% Similarity=0.137 Sum_probs=59.5
Q ss_pred cHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCC-------CeEEccCC-----------hhHHHHHHHH-HHHHh
Q 048725 89 KGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNN-------IRNVLPRH-----------EQGGIFAAEG-YARSS 149 (661)
Q Consensus 89 ~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~-------i~~v~~~h-----------E~~A~~~A~G-yar~t 149 (661)
..++.+++.|++.|-=++||.-++.....+++....+. +..+..-. |......+.- .+..-
T Consensus 46 ~a~~~~~~~l~~ggrl~~~GaG~Sg~la~~dA~e~~~tf~~~~~~~~~~iagg~~a~~~a~~~~ed~~~~~~~~l~a~~l 125 (296)
T PRK12570 46 QAVDKIVAAFKKGGRLIYMGAGTSGRLGVLDASECPPTFSVSPEMVIGLIAGGPEAMFTAVEGAEDDPELGAQDLKAIGL 125 (296)
T ss_pred HHHHHHHHHHHcCCeEEEECCchhHHHHHHHHHhCcchhcCCcccceeeeecCchHhhhcccccCCcHHHHHHHHHHcCC
Confidence 45678899999988888888888887777777654221 11121111 1111111111 11111
Q ss_pred CCcEEEEEccchh-hHHHHHHHHHhhhCCCcEEEEecCCCCc
Q 048725 150 GKPGICIATSGPG-ATNLVSGLADALLDSVPLVAITGQVPRR 190 (661)
Q Consensus 150 g~~gv~~~tsGpG-~~N~l~gl~~A~~~~iPll~ItG~~p~~ 190 (661)
++--+++.-|..| .-+.+.++..|...+.++|.||+.....
T Consensus 126 ~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~s~ 167 (296)
T PRK12570 126 TADDVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDSP 167 (296)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 2223444444444 4567788888999999999999876543
No 429
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=32.38 E-value=3.6e+02 Score=26.65 Aligned_cols=97 Identities=20% Similarity=0.161 Sum_probs=48.1
Q ss_pred CcccchHHHHHHhhhhCC---CCcEEEEECCcccccChHHH----HHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccc
Q 048725 502 GAMGFGLPAAIGAAVANP---DAIIVDIDGDGSFIMNVQEL----ATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANR 574 (661)
Q Consensus 502 g~mG~~lpaAiGaala~p---~~~vv~i~GDGsf~~~~~eL----~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~ 574 (661)
-+||.+|..+...=-.+| .|+||.+.|||--.-...-. ..+...++-|-=+++.+....-.. .-..+|...
T Consensus 95 Taig~Al~~a~~ll~~~~~~~~RrVIDvSGDG~~N~G~~p~~~ard~~~~~GitINgL~I~~~~~~~~~-~L~~yy~~~- 172 (205)
T PF06707_consen 95 TAIGSALDFAAALLAQNPFECWRRVIDVSGDGPNNQGPRPVTSARDAAVAAGITINGLAILDDDPFGGA-DLDAYYRRC- 172 (205)
T ss_pred chHHHHHHHHHHHHHhCCCCCceEEEEECCCCCCCCCCCccHHHHHHHHHCCeEEeeeEecCCCCCccc-cHHHHHhhh-
Confidence 355555555444322233 48999999999766542222 233334443333444444331100 001223211
Q ss_pred cccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHH
Q 048725 575 AHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTML 620 (661)
Q Consensus 575 ~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~ 620 (661)
+..+-|+-.+.+.+.+++..++++-|
T Consensus 173 --------------------VIgGpgAFV~~a~~~~df~~AirrKL 198 (205)
T PF06707_consen 173 --------------------VIGGPGAFVETARGFEDFAEAIRRKL 198 (205)
T ss_pred --------------------cccCCCceEEEcCCHHHHHHHHHHHH
Confidence 11111344567788899988888755
No 430
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=32.30 E-value=59 Score=32.51 Aligned_cols=116 Identities=17% Similarity=0.123 Sum_probs=63.6
Q ss_pred CCCcccc-hHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccc
Q 048725 500 GLGAMGF-GLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTY 578 (661)
Q Consensus 500 ~~g~mG~-~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~ 578 (661)
|-|+.|= ...+++|++||..+++|+++.-|-++-- -+|..-.+.+ +++=++|==... . .+++...++.+....
T Consensus 10 GKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRN--LDlimGlE~R--iVYd~vdVi~g~-~-~l~QALIkDKr~~nL 83 (272)
T COG2894 10 GKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRN--LDLIMGLENR--IVYDLVDVIEGE-A-TLNQALIKDKRLENL 83 (272)
T ss_pred CCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchh--hhhhhcccce--eeeeehhhhcCc-c-chhhHhhccccCCce
Confidence 3477776 5899999999999999999998877531 1111111122 222222210000 0 123333344444433
Q ss_pred cCCCCC--cccCCc---cHHHHHhH---cCCCEeeeCCHHHHHHHHHHHHh
Q 048725 579 LGDPSR--ESEIFP---NMLKFAEA---CGIPGAQVTRKADLRAAIQTMLD 621 (661)
Q Consensus 579 ~g~p~~--~~~~~~---d~~~~A~a---~G~~~~~v~~~~el~~al~~a~~ 621 (661)
+-.|.. .+.... .+.++.+. .+++|+-+++|.-++.-++-|+.
T Consensus 84 ~lLPAsQtrdKdalt~E~v~~vv~eL~~~~fDyIi~DsPAGIE~G~~~A~~ 134 (272)
T COG2894 84 FLLPASQTRDKDALTPEGVKKVVNELKAMDFDYIIIDSPAGIEQGFKNAVY 134 (272)
T ss_pred EecccccccCcccCCHHHHHHHHHHHHhcCCCEEEecCcchHHHHHHhhhh
Confidence 322221 111112 23333332 67999999999999998888775
No 431
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=31.49 E-value=2.2e+02 Score=31.34 Aligned_cols=49 Identities=24% Similarity=0.351 Sum_probs=36.4
Q ss_pred hHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCC
Q 048725 507 GLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQ 557 (661)
Q Consensus 507 ~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~ 557 (661)
++.+++||+++ +.++...+==.|+.+-...|..++-.++|+++++.+=+
T Consensus 68 A~~~~~GAs~a--GaRa~TaTS~~Gl~lm~E~l~~aa~~~~P~V~~~~~R~ 116 (407)
T PRK09622 68 AMSACVGAAAA--GGRVATATSSQGLALMVEVLYQASGMRLPIVLNLVNRA 116 (407)
T ss_pred HHHHHHHHHhh--CcCEEeecCcchHHHHhhHHHHHHHhhCCEEEEEeccc
Confidence 78899999988 45565555555555555678888889999888777654
No 432
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=31.44 E-value=1.5e+02 Score=32.50 Aligned_cols=95 Identities=18% Similarity=0.282 Sum_probs=56.5
Q ss_pred ChHHHHHHHhhh-----cCCCcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEEC
Q 048725 454 PPQYAIQVLDEL-----TNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDG 528 (661)
Q Consensus 454 ~~~~~~~~l~~~-----l~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~G 528 (661)
.+..++..+.+. +.+..+++++.++.- + -.|-+|+++...|.||.++.-+ ++..+..|+++.|
T Consensus 169 ~~~~I~~~~~~~~~~~~l~gk~vlITgG~T~E-----~---ID~VR~isN~SSG~~G~aiA~~----l~~~Ga~V~~v~~ 236 (399)
T PRK05579 169 EPEEIVAAAERALSPKDLAGKRVLITAGPTRE-----P---IDPVRYITNRSSGKMGYALARA----AARRGADVTLVSG 236 (399)
T ss_pred CHHHHHHHHHHHhhhcccCCCEEEEeCCCccc-----c---ccceeeeccCCcchHHHHHHHH----HHHCCCEEEEeCC
Confidence 455555555433 345567777766532 1 2478999988776666555544 4555777888888
Q ss_pred Ccccc----------cChHHHHHHHHcCCCeEEEEEeCCcch
Q 048725 529 DGSFI----------MNVQELATIKVEKLPIKILLLNNQHLG 560 (661)
Q Consensus 529 DGsf~----------~~~~eL~ta~~~~lpv~ivV~NN~g~g 560 (661)
+.+.. -+..++..++....+-.=+++||-+.+
T Consensus 237 ~~~~~~~~~~~~~dv~~~~~~~~~v~~~~~~~DilI~~Aav~ 278 (399)
T PRK05579 237 PVNLPTPAGVKRIDVESAQEMLDAVLAALPQADIFIMAAAVA 278 (399)
T ss_pred CccccCCCCcEEEccCCHHHHHHHHHHhcCCCCEEEEccccc
Confidence 76431 135666666655444344566666644
No 433
>cd08663 DAP_dppA_1 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=31.02 E-value=13 Score=38.12 Aligned_cols=141 Identities=21% Similarity=0.197 Sum_probs=73.7
Q ss_pred HHHHHHHHHHCCCCEEEeccCCCcH--HHHHHHHcCCCCeEEcc----------CChhHHHHHHHHHHHHhCC-cEEEEE
Q 048725 91 ADILVEALERQGVTDVFAYPGGASM--EIHQALTRSNNIRNVLP----------RHEQGGIFAAEGYARSSGK-PGICIA 157 (661)
Q Consensus 91 ad~lv~~L~~~GV~~vFg~PG~~~~--~l~~aL~~~~~i~~v~~----------~hE~~A~~~A~Gyar~tg~-~gv~~~ 157 (661)
..+.++.+.+.|.+.|.-.-+...+ =+.+.|.. ..++|.- .+|.--+.+=.||.-..|. .+++ .
T Consensus 39 vnAaiega~~aGa~eVvV~DsHg~~~Nll~e~L~~--~a~LI~G~pkp~~Mm~Gld~~~D~v~fiGYHa~ag~~~gvL-~ 115 (266)
T cd08663 39 VNAAIEGALEAGATEVLVNDSHGSMRNLLPEDLDP--RARLISGSPKPLGMMEGLDEGFDAALFVGYHARAGTPPGVL-S 115 (266)
T ss_pred HHHHHHHHHHcCCcEEEEEcCCCCccCcChHHCCc--cEEEEecCCCCchhhhccccCcCEEEEEecCCCcCCCCCcc-c
Confidence 4578889999999999987644332 23444432 3455522 2444444444564433333 4443 3
Q ss_pred ccchhh--HH----------HHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHH
Q 048725 158 TSGPGA--TN----------LVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRI 225 (661)
Q Consensus 158 tsGpG~--~N----------~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~ 225 (661)
|+-.|. .+ ..-.-+-|-.-++||+++|||.-....-+..+.++....+-+.+.+++....+|++..+.
T Consensus 116 HT~s~~~v~~v~iNG~~vgE~glna~~Ag~~gVPV~lVsGDd~~~~ea~~~~p~i~tv~vK~~~gr~aa~~~~p~~a~~~ 195 (266)
T cd08663 116 HTYSGGAVRDVRLNGREVGETGLNAAVAGEYGVPVVLVTGDDAACAEARELGPGVETVAVKEAIGRFAARCLPPAEARAL 195 (266)
T ss_pred ccccccceEEEEECCEEcCHHHHHHHHHhhcCCCEEEEecCHHHHHHHHhhCCCcEEEEEecccCCCccccCCHHHHHHH
Confidence 432211 11 111223345669999999998753211111111111111222233344455678888888
Q ss_pred HHHHHHHhh
Q 048725 226 VREAFLLAT 234 (661)
Q Consensus 226 i~~A~~~a~ 234 (661)
|+++.+.|+
T Consensus 196 I~~~a~~Al 204 (266)
T cd08663 196 IREAAAEAV 204 (266)
T ss_pred HHHHHHHHH
Confidence 888887775
No 434
>COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=30.77 E-value=59 Score=27.63 Aligned_cols=32 Identities=19% Similarity=0.357 Sum_probs=20.7
Q ss_pred hhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCc
Q 048725 352 VDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDS 389 (661)
Q Consensus 352 l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~ 389 (661)
..++|++|++|+.+..... ...+|++.+|+..
T Consensus 38 p~dAeLviV~G~sipnd~~------l~GKkv~i~d~~~ 69 (103)
T COG3925 38 PNDAELVIVFGSSIPNDSA------LNGKKVWIGDIER 69 (103)
T ss_pred CCcccEEEEeccccCCCcc------ccCceEEEecHHH
Confidence 3589999999999753211 2245666666543
No 435
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=30.72 E-value=4e+02 Score=25.92 Aligned_cols=62 Identities=23% Similarity=0.180 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcC--CCCeEEccCChhHHHHHHHHHHHHhC
Q 048725 89 KGADILVEALERQGVTDVFAYPGGASMEIHQALTRS--NNIRNVLPRHEQGGIFAAEGYARSSG 150 (661)
Q Consensus 89 ~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~--~~i~~v~~~hE~~A~~~A~Gyar~tg 150 (661)
-.++..++.|++.|++.++--++.....|++.|.+. .+-++...+.+.....++........
T Consensus 83 avG~~Ta~~l~~~g~~~~~~~~~~~~~~L~~~i~~~~~~~~~il~~~g~~~~~~l~~~L~~~g~ 146 (239)
T cd06578 83 AVGPKTAEALREAGLTADFVPEEGDSEGLLELLELQDGKGKRILRPRGGRAREDLAEALRERGA 146 (239)
T ss_pred EECHHHHHHHHHcCCCceeCCCccCHHHHHHHHHhcCCCCCEEEEEcCcchhHHHHHHHHHCCC
Confidence 356777777777787777765556666777777664 35666777777666666666555433
No 436
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=30.68 E-value=89 Score=27.63 Aligned_cols=42 Identities=26% Similarity=0.332 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCcc-chHHHHHHHHHHhCCCeee
Q 048725 279 HLEQIVRLISESKKPVLYVGGGCL-NSSEELRKFVELTGIPVAS 321 (661)
Q Consensus 279 ~l~~~~~~L~~AkrPvIv~G~g~~-~a~~~l~~lae~lg~PV~t 321 (661)
.+++++++|.++++ +++.|.|.. ....++....+.++.++..
T Consensus 2 ~i~~~~~~i~~~~~-i~i~g~g~s~~~a~~~~~~l~~~~~~~~~ 44 (139)
T cd05013 2 ALEKAVDLLAKARR-IYIFGVGSSGLVAEYLAYKLLRLGKPVVL 44 (139)
T ss_pred HHHHHHHHHHhCCE-EEEEEcCchHHHHHHHHHHHHHcCCceEE
Confidence 47889999998865 888888764 4556677777777776653
No 437
>KOG2949 consensus Ketopantoate hydroxymethyltransferase [Coenzyme transport and metabolism]
Probab=30.65 E-value=5e+02 Score=26.08 Aligned_cols=133 Identities=16% Similarity=0.166 Sum_probs=69.3
Q ss_pred HHHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCH--HHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEE
Q 048725 165 NLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPI--VEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVL 242 (661)
Q Consensus 165 N~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~--~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~ 242 (661)
|.++-|-+-+..+-|+-++|+-.-......+ -|.+|. ++-.-.+|...+.-+-+-.+.++....-..++..++.=+.
T Consensus 25 ~Ti~~lRqk~~~g~p~t~~TAYD~~~a~~~~-~ag~dv~LVGDSl~Mt~~GhdtTlpiSl~e~~yH~~sV~Rga~~~llv 103 (306)
T KOG2949|consen 25 VTITTLRQKHRAGEPITMVTAYDYPSAVHFD-TAGIDVCLVGDSLAMTVHGHDTTLPISLEEMLYHCRSVARGAKRPLLV 103 (306)
T ss_pred eeHHHHHHHHhcCCceEEEEecccchhhhhh-hcCCcEEEeccchhheeeccccceeeeHHHHHHHHHHHHccCCCceEE
Confidence 3456666667777777777764322111000 012221 0111112333332222334444444444444444433345
Q ss_pred EEeccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCccchHHHHHHHHHHhCCCeee
Q 048725 243 IDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVAS 321 (661)
Q Consensus 243 I~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~~a~~~l~~lae~lg~PV~t 321 (661)
.++|+--.+ ....+.++.+++.++.++--.+-+-+|.....+.+.+|+|+ |+||+-
T Consensus 104 ~DlPFgtye----------------------S~~sda~knAv~vmk~~g~~~vK~EgGs~~~~~~~~~l~er-gipV~g 159 (306)
T KOG2949|consen 104 GDLPFGTYE----------------------SSWSDAVKNAVRVMKEGGMDAVKLEGGSNSRITAAKRLVER-GIPVMG 159 (306)
T ss_pred EecCccccc----------------------ccHHHHHHHHHHHHHhcCCceEEEccCcHHHHHHHHHHHHc-CCceee
Confidence 566653210 12567788999999887766666655655566778888886 899964
No 438
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=30.54 E-value=1.2e+02 Score=31.68 Aligned_cols=35 Identities=9% Similarity=0.139 Sum_probs=19.0
Q ss_pred CCcEEEEECCcccccChHHHHHHHHc---CCCeEEEEEeCC
Q 048725 520 DAIIVDIDGDGSFIMNVQELATIKVE---KLPIKILLLNNQ 557 (661)
Q Consensus 520 ~~~vv~i~GDGsf~~~~~eL~ta~~~---~lpv~ivV~NN~ 557 (661)
-|-+|++.|.| .+++.|..+.+. +..+..|+-|+.
T Consensus 90 ~ri~vl~Sg~g---snl~al~~~~~~~~~~~~i~~visn~~ 127 (286)
T PRK06027 90 KRVVILVSKED---HCLGDLLWRWRSGELPVEIAAVISNHD 127 (286)
T ss_pred cEEEEEEcCCC---CCHHHHHHHHHcCCCCcEEEEEEEcCh
Confidence 34566666664 356666655544 344555555553
No 439
>PF04951 Peptidase_M55: D-aminopeptidase; InterPro: IPR007035 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M55 (DppA aminopeptidase family, clan MN). The type example is Bacillus subtilis DppA, which is a binuclear zinc-dependent, D-specific aminopeptidase. The structure reveals that DppA is a new example of a self-compartmentalising protease, a family of proteolytic complexes. Proteasomes are the most extensively studied representatives of this family. The DppA enzyme is composed of identical 30 kDa subunits organised in a decamer with 52 point-group symmetry. A 20 A wide channel runs through the complex, giving access to a central chamber holding the active sites. The structure shows DppA to be a prototype of a new family of metalloaminopeptidases characterised by the SXDXEG key sequence []. The only known substrates are D-ala-D-ala and D-ala-gly-gly.; PDB: 1HI9_A.
Probab=30.13 E-value=11 Score=38.74 Aligned_cols=144 Identities=20% Similarity=0.171 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHCCCCEEEeccCCCcHH--HHHHHHcCCCCeEEccC----------ChhHHHHHHHHHHHHhCCcEEEEE
Q 048725 90 GADILVEALERQGVTDVFAYPGGASME--IHQALTRSNNIRNVLPR----------HEQGGIFAAEGYARSSGKPGICIA 157 (661)
Q Consensus 90 gad~lv~~L~~~GV~~vFg~PG~~~~~--l~~aL~~~~~i~~v~~~----------hE~~A~~~A~Gyar~tg~~gv~~~ 157 (661)
-..+.++.+.+.|.+.|.-.-+...+- +.+.|. +..++|.-. +|.--+.+=.||.-..|.+.-++.
T Consensus 38 evnAaiega~~aGa~eVvV~DsHg~~~Nl~~~~L~--~~~~LI~G~~rp~~Mm~Gld~~~Dav~fiGYHa~aGt~~gvL~ 115 (265)
T PF04951_consen 38 EVNAAIEGAFEAGATEVVVNDSHGSMRNLLPEELP--PRARLIRGSPRPLSMMEGLDESFDAVFFIGYHARAGTPRGVLA 115 (265)
T ss_dssp HHHHHHHHHHHTT-SEEEEEE-STTS--S-TTTS---TTSEEEEES--TTGGGTT--TT-SEEEEEEE---TTS-SSTT-
T ss_pred HHHHHHHHHHhcCCeEEEEEecCCCCCCcChHHCC--cCeEEEeCCCCcchhhhccccCcCEEEEEecCcccCCCCcccc
Confidence 356788999999999999865543322 233332 246666542 222222222344444444322233
Q ss_pred ccchhhH------------HHHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHH
Q 048725 158 TSGPGAT------------NLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRI 225 (661)
Q Consensus 158 tsGpG~~------------N~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~ 225 (661)
|+-.|.. -..-.-+-|-.-++|++++|||.-....-+..+-.+....+-+.+..++....+|+.+.+.
T Consensus 116 HT~~~~~i~~v~iNG~~~gE~~lna~~Ag~~GVPV~lVsGD~~l~~ea~~~~P~~~tv~vK~~~gr~aA~~~~p~~a~~~ 195 (265)
T PF04951_consen 116 HTYSGSVIHEVRINGREVGEFGLNAALAGYYGVPVVLVSGDDALCEEAKELLPWIVTVAVKEGIGRYAAISLHPAEACER 195 (265)
T ss_dssp -SSSTTE-EEEEETTEEE-HHHHHHHHHHHTT--EEEEEEEHHHHHHHHTTSTT-EEEEEEEEEETTEEEE--HHHHHHH
T ss_pred ceeccccceeEEECCEEcchhHHHHHHHhhcCCcEEEEeCcHHHHHHHHHhCCCceEEEEecccCCCccccCCHHHHHHH
Confidence 3322222 2222223355679999999998753221111111111111222233334445567777777
Q ss_pred HHHHHHHhhc
Q 048725 226 VREAFLLATS 235 (661)
Q Consensus 226 i~~A~~~a~s 235 (661)
|+++.+.|+.
T Consensus 196 i~~~a~~Al~ 205 (265)
T PF04951_consen 196 IREAAKEALE 205 (265)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777764
No 440
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.48 E-value=1.2e+02 Score=28.46 Aligned_cols=44 Identities=14% Similarity=0.320 Sum_probs=33.2
Q ss_pred ccHHHHHhHcCCCEeeeCCH--HHHHHHHHHHHhC-CCcEEEEEEeC
Q 048725 590 PNMLKFAEACGIPGAQVTRK--ADLRAAIQTMLDT-PGPYLLDVIFP 633 (661)
Q Consensus 590 ~d~~~~A~a~G~~~~~v~~~--~el~~al~~a~~~-~gp~lIeV~~~ 633 (661)
...+..|+|||+.++.+++. +.+.+.+++-.+. +||..|+..++
T Consensus 21 THV~LtARAfGA~gil~~~e~De~v~esv~dVv~rwGG~F~v~~~~n 67 (179)
T COG1303 21 THVALTARAFGADGILLDGEEDEKVVESVEDVVERWGGPFFVKFGVN 67 (179)
T ss_pred hhhhhhhHhhCCceEEEcCcccHHHHHHHHHHHHhcCCCEEEEEccc
Confidence 46788999999999988754 4566666666654 88988877664
No 441
>TIGR01580 narG respiratory nitrate reductase, alpha subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the alpha subunit for nitrate reductase I (narG) and nitrate reductase II (narZ) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model The seed members used to make the model include Nitrate reductases from Pseudomonas fluorescens, E.coli and B.subtilis. All seed members are experimentally characterized. Some unpublished nitrate reductases, that are shorter sequences, and probably fragments fall in between the noise and trusted cutoffs. P
Probab=29.38 E-value=1.6e+02 Score=36.96 Aligned_cols=142 Identities=20% Similarity=0.077 Sum_probs=72.0
Q ss_pred CCHHHHHHHHHHHHh------CCCcEEEEcCCccc--hHHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCCcH
Q 048725 275 PSEVHLEQIVRLISE------SKKPVLYVGGGCLN--SSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTV 346 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~------AkrPvIv~G~g~~~--a~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g~~ 346 (661)
..+++++.+++.|.. ..+...+.|.+... ......+|...+|.+.+....-.+-.|...|...| .....
T Consensus 161 SWDEAldlIAakl~~i~~kYGPdsI~~fs~~~a~s~~s~aa~~Rfl~llGg~~~~~~d~~Cd~p~a~p~v~G---~~t~~ 237 (1235)
T TIGR01580 161 SWQEVNELIAASNVYTVKNYGPDRVVGFSPIPAMSMVSYASGSRYLSLIGGTCLSFYDWYCDLPPASPQTWG---EQTDV 237 (1235)
T ss_pred cHHHHHHHHHHHHHHHHHHhCcceEEEecCCCcccchhhHHHHHHHHhcCCccccCCCCcchhhHHhHhhee---cCCCC
Confidence 356777777666543 23323333323222 12234578888998764422111112222333222 21111
Q ss_pred HHHHhhhcCCEEEEeCCCCCCCcCCcc----cccCCCCeEEEEcCCchhhccCCCCcceEe--ccHHHHHHHHHHHhcC
Q 048725 347 YANYAVDKSDLLLAFGVRFDDRVTGKL----EAFASRAKIVHIDIDSAEIGKNKQPHVSVC--ADLKLALKGINRILGG 419 (661)
Q Consensus 347 ~a~~~l~~aDlvL~vG~~~~~~~t~~~----~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~--~D~~~~L~~L~~~l~~ 419 (661)
.-..-+.++|+||++|+......+... +.-.+..|+|.||++.....+.-...+.|. .|...+|..+...+++
T Consensus 238 ~e~~D~~nS~~II~WGsN~~~T~~p~a~~l~eAr~rGaKvVVVDPr~t~tA~~AD~WLpIrPGTD~ALaLAm~hvII~E 316 (1235)
T TIGR01580 238 PESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAITPDYAEIAKLCDLWLAPKQGTDAALALAMGHVILRE 316 (1235)
T ss_pred CCchhhhcCCEEEEECCChhhhcchhHHHHHHHHHcCCeEEEEcCCCChhhHhhCEEeCCCCChHHHHHHHHHHHHHHC
Confidence 001125689999999999754422221 122356799999999877665333333333 5666555555455543
No 442
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=29.28 E-value=1e+02 Score=35.22 Aligned_cols=104 Identities=17% Similarity=0.163 Sum_probs=64.3
Q ss_pred cccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCC
Q 048725 503 AMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDP 582 (661)
Q Consensus 503 ~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p 582 (661)
.-|+-+=-|+--+-.. ..-|+++|=......+..+..+ .++++.++.+.+.. .+....++. ...-.....|.
T Consensus 81 ~s~~Dil~al~~a~~~--~~~ia~vg~~~~~~~~~~~~~l--l~~~i~~~~~~~~~-e~~~~~~~l--~~~G~~~viG~- 152 (526)
T TIGR02329 81 PTGFDVMQALARARRI--ASSIGVVTHQDTPPALRRFQAA--FNLDIVQRSYVTEE-DARSCVNDL--RARGIGAVVGA- 152 (526)
T ss_pred CChhhHHHHHHHHHhc--CCcEEEEecCcccHHHHHHHHH--hCCceEEEEecCHH-HHHHHHHHH--HHCCCCEEECC-
Confidence 3455554555333333 3347888977776666666554 46777777777652 222122211 11222333443
Q ss_pred CCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh
Q 048725 583 SRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD 621 (661)
Q Consensus 583 ~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~ 621 (661)
.--..+|+-+|++++-+.+.+.+..++++|+.
T Consensus 153 -------~~~~~~A~~~gl~~ili~s~esi~~a~~~A~~ 184 (526)
T TIGR02329 153 -------GLITDLAEQAGLHGVFLYSADSVRQAFDDALD 184 (526)
T ss_pred -------hHHHHHHHHcCCceEEEecHHHHHHHHHHHHH
Confidence 34578999999999999999999999998875
No 443
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=29.06 E-value=1.6e+02 Score=30.35 Aligned_cols=112 Identities=16% Similarity=0.227 Sum_probs=60.9
Q ss_pred cCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHc----------CCCeEEEEEeCCcc
Q 048725 490 RRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVE----------KLPIKILLLNNQHL 559 (661)
Q Consensus 490 ~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~----------~lpv~ivV~NN~g~ 559 (661)
..+.+.+...- .-||+ .+.|+||+++- =||++-++ .|.|++|.+-..... ..|+-||.=--+|.
T Consensus 79 ~G~~RV~DTPI-tE~gF-tG~avGAA~~G-LrPi~efM---tfnFsmqAid~IiNsaakt~YmSgG~~~~piVfRGPnG~ 152 (359)
T KOG0524|consen 79 FGDKRVLDTPI-TEMGF-TGIAVGAAMAG-LRPICEFM---TFNFSMQAIDQIINSAAKTHYMSGGQQPVPIVFRGPNGA 152 (359)
T ss_pred cCCceeecCcc-hhccc-chhhHhHHHhC-cchhhhhh---cchhHHHHHHHHHHHHHHHhcccCCceeccEEEeCCCCc
Confidence 34555554332 35665 35678888874 35565443 577888887654422 12222222111111
Q ss_pred hhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHc-CCCEeeeCCHHHHHHHHHHHHhCCCcEEE
Q 048725 560 GMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEAC-GIPGAQVTRKADLRAAIQTMLDTPGPYLL 628 (661)
Q Consensus 560 g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lI 628 (661)
+.-..-| + .-||+.+=.++ |++.+...+.++-+..|+.|++.+.|+++
T Consensus 153 ~~gv~Aq----------------H-----SQ~f~~wy~siPGlkvvapysaedakGLlKaAIRd~NPVV~ 201 (359)
T KOG0524|consen 153 AAGVAAQ----------------H-----SQDFASWYGSIPGLKVVAPYSAEDAKGLLKAAIRDENPVVF 201 (359)
T ss_pred ccchhhh----------------h-----hhhhHHHhccCCCceEeccCChhhhhhHHHHhccCCCCeEE
Confidence 1100000 0 02444444444 66777778999999999999998887643
No 444
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=28.88 E-value=2.3e+02 Score=26.83 Aligned_cols=87 Identities=20% Similarity=0.117 Sum_probs=50.1
Q ss_pred HHHHHHHHHHCCCCEEEeccCCCcHHHHHH----HHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchh-hHH
Q 048725 91 ADILVEALERQGVTDVFAYPGGASMEIHQA----LTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPG-ATN 165 (661)
Q Consensus 91 ad~lv~~L~~~GV~~vFg~PG~~~~~l~~a----L~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG-~~N 165 (661)
-+.+++.|.+.+-=++||.-++. .+... |.+. ++..+... |.. ....+.+ -++++-|..| ...
T Consensus 20 ~~~~~~~l~~a~~I~i~G~G~S~--~~A~~~~~~l~~~-g~~~~~~~-~~~-------~~~~~~~-Dv~I~iS~sG~t~~ 87 (179)
T TIGR03127 20 LDKLADKIIKAKRIFVAGAGRSG--LVGKAFAMRLMHL-GFNVYVVG-ETT-------TPSIKKG-DLLIAISGSGETES 87 (179)
T ss_pred HHHHHHHHHhCCEEEEEecCHHH--HHHHHHHHHHHhC-CCeEEEeC-Ccc-------cCCCCCC-CEEEEEeCCCCcHH
Confidence 46688888887765666665543 33333 3332 34444332 221 1223222 3444444455 455
Q ss_pred HHHHHHHhhhCCCcEEEEecCCCC
Q 048725 166 LVSGLADALLDSVPLVAITGQVPR 189 (661)
Q Consensus 166 ~l~gl~~A~~~~iPll~ItG~~p~ 189 (661)
.+..+-.|...+.|+|.||+....
T Consensus 88 ~i~~~~~ak~~g~~ii~IT~~~~s 111 (179)
T TIGR03127 88 LVTVAKKAKEIGATVAAITTNPES 111 (179)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCC
Confidence 667778889999999999986653
No 445
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=28.70 E-value=1.4e+02 Score=31.45 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCccchHHHHHHHHHHhCCCeeecCC
Q 048725 279 HLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLM 324 (661)
Q Consensus 279 ~l~~~~~~L~~AkrPvIv~G~g~~~a~~~l~~lae~lg~PV~tt~~ 324 (661)
..+.+.+++ ..++..+|+|.........+..++++.++|+++...
T Consensus 55 a~~~~~~li-~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~ 99 (344)
T cd06348 55 AINAFQTLI-NKDRVLAIIGPTLSQQAFAADPIAERAGVPVVGPSN 99 (344)
T ss_pred HHHHHHHHh-hhcCceEEECCCCcHHHHhhhHHHHhCCCCEEeccC
Confidence 344444444 556788999977655556677899999999997543
No 446
>cd08770 DAP_dppA_3 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=28.63 E-value=29 Score=35.67 Aligned_cols=142 Identities=15% Similarity=0.113 Sum_probs=72.1
Q ss_pred HHHHHHHHHHCCCCEEEeccCCCcH--HHHHHHHcCCCCeEEccC-----------ChhHHHHHHHHH-HHHhCCcEEEE
Q 048725 91 ADILVEALERQGVTDVFAYPGGASM--EIHQALTRSNNIRNVLPR-----------HEQGGIFAAEGY-ARSSGKPGICI 156 (661)
Q Consensus 91 ad~lv~~L~~~GV~~vFg~PG~~~~--~l~~aL~~~~~i~~v~~~-----------hE~~A~~~A~Gy-ar~tg~~gv~~ 156 (661)
..+.++.+.+.|.+.|.-.-+...+ =+.+.|.. ..++|.-. +|.--+.+=.|| ||+.+..+++
T Consensus 39 vnAaiega~~aGa~eIvV~DsHg~~~Nll~e~L~~--~a~lI~G~~~rp~~Mm~Gld~s~D~v~fiGYHa~ag~~~gvL- 115 (263)
T cd08770 39 VVAACEGAIEAGATEIVVKDAHGSGRNILPSKLPD--NVKLIRGWSGHPYCMVEGLDESFDAVMFIGYHSAAGSPGNPL- 115 (263)
T ss_pred HHHHHHHHHHcCCcEEEEEcCCCCccCcChHHCCc--ceEEEeCCCCCcchHhhccccCccEEEEEecCCccCCCCCcc-
Confidence 4678889999999999887743322 24444432 36666332 233233333463 4443333443
Q ss_pred Eccchh-hHH----------HHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHH
Q 048725 157 ATSGPG-ATN----------LVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRI 225 (661)
Q Consensus 157 ~tsGpG-~~N----------~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~ 225 (661)
.|+--| ..+ ..-.-+-|-.-++||+++|||.-....-+..+..+.-..+-+.+. ++....+|++..+.
T Consensus 116 ~HT~~~~~~~v~iNG~~~gE~~lna~~Ag~~gVPV~lvsGD~~~~~ea~~~~P~~~tv~vK~~~g-~aa~~~~p~~a~~~ 194 (263)
T cd08770 116 AHTLTGGVSYVKINGEIASEFLINAYTAAYLGVPVVFVSGDAGLCAEAKELNPNIVTVPVKEGFG-GATISIHPGLACKE 194 (263)
T ss_pred ccccccceEEEEECCEEcCHHHHHHHHHhhcCCCEEEEecCHHHHHHHHHhCCCceEEEeeeeec-cccccCCHHHHHHH
Confidence 333211 211 122223345679999999998753211111111111111111222 33344567888888
Q ss_pred HHHHHHHhhcC
Q 048725 226 VREAFLLATSG 236 (661)
Q Consensus 226 i~~A~~~a~s~ 236 (661)
|+++.+.|+..
T Consensus 195 I~~~~~~Al~~ 205 (263)
T cd08770 195 IRKGVKKALSG 205 (263)
T ss_pred HHHHHHHHHhc
Confidence 88888777543
No 447
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=28.62 E-value=1.1e+02 Score=26.17 Aligned_cols=53 Identities=23% Similarity=0.271 Sum_probs=0.0
Q ss_pred hCCCcEEEEcCCccch--HHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEE
Q 048725 289 ESKKPVLYVGGGCLNS--SEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLA 360 (661)
Q Consensus 289 ~AkrPvIv~G~g~~~a--~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~ 360 (661)
+.+|.++++|.|...+ ...++++++..|+++-....+ .........++|+||.
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~-------------------~~~~~~~~~~~Dvill 56 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGS-------------------YGAAGEKLDDADVVLL 56 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEec-------------------HHHHHhhcCCCCEEEE
No 448
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=28.60 E-value=2.2e+02 Score=24.79 Aligned_cols=69 Identities=28% Similarity=0.393 Sum_probs=41.6
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCc-------H----HH----HHHHHcCCCCeEEccCC--hhHHHHHHHHHHHHh
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGAS-------M----EI----HQALTRSNNIRNVLPRH--EQGGIFAAEGYARSS 149 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~-------~----~l----~~aL~~~~~i~~v~~~h--E~~A~~~A~Gyar~t 149 (661)
.....+.+.+.|+++|. .+| +|-... . .+ ++.|.+++ +=+....+ .-....+=.|||.+.
T Consensus 12 ~~~~~~~~~~~L~~~g~-~v~-~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D-~via~l~~~~~d~Gt~~ElG~A~al 88 (113)
T PF05014_consen 12 QKARVERLREALEKNGF-EVY-SPQDNDENDEEDSQEWAREIFERDLEGIRECD-IVIANLDGFRPDSGTAFELGYAYAL 88 (113)
T ss_dssp HHHHHHHHHHHHHTTTT-EEE-GGCTCSSS--TTSHHCHHHHHHHHHHHHHHSS-EEEEEECSSS--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCC-EEE-eccccccccccccchHHHHHHHHHHHHHHHCC-EEEEECCCCCCCCcHHHHHHHHHHC
Confidence 34566789999999999 444 666322 1 11 23345554 32222222 566777788888888
Q ss_pred CCcEEEEEc
Q 048725 150 GKPGICIAT 158 (661)
Q Consensus 150 g~~gv~~~t 158 (661)
|||.+++.+
T Consensus 89 gkpv~~~~~ 97 (113)
T PF05014_consen 89 GKPVILLTE 97 (113)
T ss_dssp TSEEEEEEC
T ss_pred CCEEEEEEc
Confidence 888887654
No 449
>PF10750 DUF2536: Protein of unknown function (DUF2536); InterPro: IPR019686 This entry represents proteins with unknown function appears to be restricted to Bacillus spp.
Probab=28.30 E-value=1.1e+02 Score=24.35 Aligned_cols=32 Identities=16% Similarity=0.096 Sum_probs=27.7
Q ss_pred CEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeC
Q 048725 602 PGAQVTRKADLRAAIQTMLDTPGPYLLDVIFP 633 (661)
Q Consensus 602 ~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~ 633 (661)
+.....+..+|++.+.+.++.++..++||.--
T Consensus 13 EfFEA~~l~~LEkkIneqIe~NkailL~V~sV 44 (68)
T PF10750_consen 13 EFFEANDLQTLEKKINEQIEHNKAILLEVHSV 44 (68)
T ss_pred eEEecchHHHHHHHHHHHHhcCceEEEEEEEe
Confidence 45567889999999999999999999999754
No 450
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=28.16 E-value=2.1e+02 Score=34.70 Aligned_cols=68 Identities=12% Similarity=0.074 Sum_probs=37.4
Q ss_pred hhhcCCEEEEeCCCCCCCcCCccccc------CCCCeEEEEcCCchhhccCCCCcceE--eccHHHHHHHHHHHhc
Q 048725 351 AVDKSDLLLAFGVRFDDRVTGKLEAF------ASRAKIVHIDIDSAEIGKNKQPHVSV--CADLKLALKGINRILG 418 (661)
Q Consensus 351 ~l~~aDlvL~vG~~~~~~~t~~~~~~------~~~~~vi~Id~d~~~i~~~~~~~~~i--~~D~~~~L~~L~~~l~ 418 (661)
-+.++|+||++|....+.....+..+ .+.+|+|.||+........-...+.+ -.|...++.-+...+.
T Consensus 203 Di~~ad~il~~G~Np~~~~p~~~~~i~~a~~~~~GakliviDPr~t~ta~~Ad~~l~irPGTD~AL~lam~~~ii~ 278 (830)
T TIGR01706 203 DFEAADAFVLWGSNMAEMHPILWTRVTDRRLSHPKVKVVVLSTFTHRSFDLADIGIIFKPQTDLAILNYIANYIIQ 278 (830)
T ss_pred HHhhCCEEEEEcCCcchhCCHHHHHHHHHHhccCCCEEEEECCCCCchhHHhCeeeccCCCCHHHHHHHHHHHHHH
Confidence 46899999999998754332211111 23679999998655443311111222 2555555544444443
No 451
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=27.69 E-value=1.1e+02 Score=32.22 Aligned_cols=44 Identities=23% Similarity=0.290 Sum_probs=34.5
Q ss_pred ccCCCCCCCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHc
Q 048725 80 SRFAPDQPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTR 123 (661)
Q Consensus 80 ~~~~~~~~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~ 123 (661)
+|+.+......-+.+++.|+++||+.++.+-|+.++.-...|.+
T Consensus 69 sR~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e 112 (301)
T TIGR02482 69 ARCPEFKTEEGRQKAVENLKKLGIEGLVVIGGDGSYTGAQKLYE 112 (301)
T ss_pred CCCCccCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHH
Confidence 34433323346788999999999999999999999888877765
No 452
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=27.55 E-value=1.8e+02 Score=31.42 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHh--CCCcEEEEcCCccchHHHHHHHHHHhCCCee
Q 048725 278 VHLEQIVRLISE--SKKPVLYVGGGCLNSSEELRKFVELTGIPVA 320 (661)
Q Consensus 278 ~~l~~~~~~L~~--AkrPvIv~G~g~~~a~~~l~~lae~lg~PV~ 320 (661)
..++++.+.+.+ .+|++|+.|.+.. ..+.+.+..+..++.+.
T Consensus 9 g~l~~l~~~~~~~g~~~~livtd~~~~-~~~~~~~~l~~~~~~~~ 52 (367)
T cd08182 9 GAIAKLPSLLKGLGGKRVLLVTGPRSA-IASGLTDILKPLGTLVV 52 (367)
T ss_pred CHHHHHHHHHHhcCCCeEEEEeCchHH-HHHHHHHHHHHcCCeEE
Confidence 345666666654 4789999988766 44566666777776553
No 453
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=27.41 E-value=5.1e+02 Score=26.24 Aligned_cols=85 Identities=13% Similarity=0.097 Sum_probs=50.6
Q ss_pred HHHHhhhcCCCcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhh-CCCCcEEEEECCc---c-cc
Q 048725 459 IQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVA-NPDAIIVDIDGDG---S-FI 533 (661)
Q Consensus 459 ~~~l~~~l~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala-~p~~~vv~i~GDG---s-f~ 533 (661)
.+...++++++..|+.|.|+...+.++++.-..+...+++ +++.+ ..+. +++-.++++-|.- . .+
T Consensus 83 A~~Aa~lI~~g~tIflD~GtT~~~la~~L~~~~~ltvvTn--------sl~i~--~~l~~~~~~~villGG~~~~~~~~~ 152 (252)
T PRK10681 83 AQLAATLVEPNQTLFFDCGTTTPWIIEAIDNELPFTAVCY--------SLNTF--LALQEKPHCRAILCGGEFHASNAIF 152 (252)
T ss_pred HHHHHhhcCCCCEEEEECCccHHHHHHhcCCCCCeEEEEC--------CHHHH--HHHhhCCCCEEEEECcEEecCccee
Confidence 3344455666777777889888888888864445666665 44444 2443 4566666554442 1 11
Q ss_pred cChHHHHHHHHcCCCeEEEE
Q 048725 534 MNVQELATIKVEKLPIKILL 553 (661)
Q Consensus 534 ~~~~eL~ta~~~~lpv~ivV 553 (661)
.....+....+++.+..++=
T Consensus 153 ~G~~~~~~l~~~~~D~afig 172 (252)
T PRK10681 153 KPLDFQQTLDNICPDIAFYS 172 (252)
T ss_pred eCHHHHHHHHhhCCCEEEEe
Confidence 22334566677888776653
No 454
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=27.17 E-value=1.2e+02 Score=30.41 Aligned_cols=84 Identities=13% Similarity=0.202 Sum_probs=52.6
Q ss_pred CCChHHHHHHHhhhc-CCCcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECC-
Q 048725 452 SIPPQYAIQVLDELT-NGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGD- 529 (661)
Q Consensus 452 ~i~~~~~~~~l~~~l-~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GD- 529 (661)
.+....+...+.+.. +.|.+++.++|- | +.++..... +. =+-.+ -+-+||.++|.
T Consensus 90 ~I~~~~l~~~l~~l~~~~d~vlVEGAGG---l---~vPl~~~~~-------------~~-D~~~~---~~lpvILV~~~~ 146 (223)
T COG0132 90 TIDLEKLSQGLRQLLKKYDLVLVEGAGG---L---LVPLTEEYT-------------FA-DLAVQ---LQLPVILVVGIK 146 (223)
T ss_pred cccHHHHHHHHHhhhcccCEEEEeCCCc---e---eeecCCccc-------------HH-HHHHH---cCCCEEEEecCC
Confidence 356666666665554 457788888773 1 122222111 00 01112 24567777764
Q ss_pred -cccccChHHHHHHHHcCCCeEEEEEeCCc
Q 048725 530 -GSFIMNVQELATIKVEKLPIKILLLNNQH 558 (661)
Q Consensus 530 -Gsf~~~~~eL~ta~~~~lpv~ivV~NN~g 558 (661)
|+..|++-.+.-+...++|+.-+|+|.-.
T Consensus 147 LGtINHtlLt~eal~~~gl~l~G~I~n~~~ 176 (223)
T COG0132 147 LGTINHTLLTVEALRARGLPLAGWVANGIN 176 (223)
T ss_pred ccHHHHHHHHHHHHHHCCCCEEEEEEccCC
Confidence 78888888899999999999999998643
No 455
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=27.05 E-value=1.2e+02 Score=32.12 Aligned_cols=45 Identities=22% Similarity=0.335 Sum_probs=35.5
Q ss_pred ccCCCCCCCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcC
Q 048725 80 SRFAPDQPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRS 124 (661)
Q Consensus 80 ~~~~~~~~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~ 124 (661)
+|+.+......-+.+++.|+++||+.+|.+-|+.++.-...|.+.
T Consensus 70 sR~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~ 114 (317)
T cd00763 70 ARFPEFKDEEGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTEH 114 (317)
T ss_pred CCCCccCCHHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHc
Confidence 344332234577899999999999999999999998888888764
No 456
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=26.96 E-value=3.7e+02 Score=22.51 Aligned_cols=64 Identities=23% Similarity=0.283 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhCCCeeecCCC-CCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCC-CCCcCCcccccCCCCeE
Q 048725 305 SEELRKFVELTGIPVASTLMG-LGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRF-DDRVTGKLEAFASRAKI 382 (661)
Q Consensus 305 ~~~l~~lae~lg~PV~tt~~g-kg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~-~~~~t~~~~~~~~~~~v 382 (661)
.+.|.+.+++.|+-+-....| .|+- +.| ..+-+.++|+||++|..- .+. ..| .+.++
T Consensus 3 AeaL~~aA~~~G~~i~VEtqg~~g~~---~~l------------t~~~i~~Ad~VIia~d~~i~~~-----~rf-~gk~v 61 (88)
T PRK10474 3 AEALESAAKAKGWEVKVETQGSIGLE---NEL------------TAEDVASADMVILTKDIGIKFE-----ERF-AGKTI 61 (88)
T ss_pred HHHHHHHHHHCCCeEEEEecCCcCcC---CCC------------CHHHHHhCCEEEEEecCCCcch-----hcc-CCCce
Confidence 467889999999998654433 3322 222 124578999999999775 221 122 23466
Q ss_pred EEEcCCc
Q 048725 383 VHIDIDS 389 (661)
Q Consensus 383 i~Id~d~ 389 (661)
++++++.
T Consensus 62 ~~~s~~~ 68 (88)
T PRK10474 62 VRVNISD 68 (88)
T ss_pred EEecHHH
Confidence 6666543
No 457
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=26.92 E-value=2.7e+02 Score=29.58 Aligned_cols=94 Identities=24% Similarity=0.381 Sum_probs=57.9
Q ss_pred HhCCcEEEEEccchhhHHH---HHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhccccccc----cc--CC
Q 048725 148 SSGKPGICIATSGPGATNL---VSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNY----LV--LD 218 (661)
Q Consensus 148 ~tg~~gv~~~tsGpG~~N~---l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~----~v--~~ 218 (661)
..++..||++-+|=|++|- .-++-=|..=..|+|+++-..... .|+......-..+.+ .+-.+ .| .+
T Consensus 183 Y~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvCENN~yG-MGTs~~Rasa~teyy---kRG~yiPGl~VdGmd 258 (394)
T KOG0225|consen 183 YNREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFVCENNHYG-MGTSAERASASTEYY---KRGDYIPGLKVDGMD 258 (394)
T ss_pred hccCCceEEEEeccccccchhHHHHhhHHHHhCCCEEEEEccCCCc-cCcchhhhhcChHHH---hccCCCCceEECCcc
Confidence 3477899999999999884 344444567789999999644322 233221111111111 11111 11 24
Q ss_pred cCcHHHHHHHHHHHhhcCCCceEEEEec
Q 048725 219 VDDIPRIVREAFLLATSGRPGPVLIDVP 246 (661)
Q Consensus 219 ~~~i~~~i~~A~~~a~s~~~GPV~I~iP 246 (661)
+-.+.++.+.|...|+++. ||..+++-
T Consensus 259 vlaVr~a~KfA~~~~~~g~-GPilmE~~ 285 (394)
T KOG0225|consen 259 VLAVREATKFAKKYALEGK-GPILMEMD 285 (394)
T ss_pred hhhHHHHHHHHHHHHhcCC-CCEEEEEe
Confidence 4457788888888998886 99999884
No 458
>cd02758 MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD contains tetrathionate reductase, subunit A, (TtrA) and other related proteins. The Salmonella enterica tetrathionate reductase catalyses the reduction of trithionate but not sulfur or thiosulfate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=26.59 E-value=1.5e+02 Score=35.41 Aligned_cols=69 Identities=17% Similarity=0.086 Sum_probs=38.9
Q ss_pred hhhcCCEEEEeCCCCCCCcCCc---ccc----cC-CCCeEEEEcCCchhhc---cCCCCcce--EeccHHHHHHHHHHHh
Q 048725 351 AVDKSDLLLAFGVRFDDRVTGK---LEA----FA-SRAKIVHIDIDSAEIG---KNKQPHVS--VCADLKLALKGINRIL 417 (661)
Q Consensus 351 ~l~~aDlvL~vG~~~~~~~t~~---~~~----~~-~~~~vi~Id~d~~~i~---~~~~~~~~--i~~D~~~~L~~L~~~l 417 (661)
-+++||+||.+|+...+..... +.. .. ...|+|.||+...... ..-...+. --.|...++..+...+
T Consensus 208 D~~~ad~il~~GsN~a~~~~~~~~~~~~l~~a~~~~G~KlVVVDPr~t~ta~~~~~Ad~wlpIrPGTD~AL~lam~~~Ii 287 (735)
T cd02758 208 DFDNAEFALFIGTSPAQAGNPFKRQARRLAEARTEGNFKYVVVDPVLPNTTSAAGENIRWVPIKPGGDGALAMAMIRWII 287 (735)
T ss_pred CHhhCcEEEEeCCCHHHhCCCcchHHHHHHHHHHhCCCEEEEECCCCCccccccccCCEEECCCCCcHHHHHHHHHHHHH
Confidence 4679999999999875432211 111 11 4579999998876533 21111222 2356665555555555
Q ss_pred cC
Q 048725 418 GG 419 (661)
Q Consensus 418 ~~ 419 (661)
++
T Consensus 288 e~ 289 (735)
T cd02758 288 EN 289 (735)
T ss_pred HC
Confidence 43
No 459
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=26.57 E-value=1.4e+02 Score=31.91 Aligned_cols=41 Identities=12% Similarity=0.253 Sum_probs=26.5
Q ss_pred HHHHHHHHHHh-CCCcEEEEcCCcc-chHHHHHHHHHHhCCCe
Q 048725 279 HLEQIVRLISE-SKKPVLYVGGGCL-NSSEELRKFVELTGIPV 319 (661)
Q Consensus 279 ~l~~~~~~L~~-AkrPvIv~G~g~~-~a~~~l~~lae~lg~PV 319 (661)
.++++.+.+++ .+|++|+.|.+.. ...+.+.+..+..|+.+
T Consensus 10 ~~~~l~~~~~~~~~r~livt~~~~~~~~~~~v~~~L~~~~i~~ 52 (351)
T cd08170 10 ALDELGEYLARLGKRALIIADEFVLDLVGAKIEESLAAAGIDA 52 (351)
T ss_pred HHHHHHHHHHHhCCeEEEEECHHHHHHHHHHHHHHHHhCCCeE
Confidence 44555555543 5888888887665 34566677777777765
No 460
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.52 E-value=1e+02 Score=29.10 Aligned_cols=38 Identities=18% Similarity=0.326 Sum_probs=28.5
Q ss_pred CCCc-EEEEcCCcc------chHHHHHHHHHHhCCCeeecCCCCC
Q 048725 290 SKKP-VLYVGGGCL------NSSEELRKFVELTGIPVASTLMGLG 327 (661)
Q Consensus 290 AkrP-vIv~G~g~~------~a~~~l~~lae~lg~PV~tt~~gkg 327 (661)
.++| ++++|..+. -..++..+||+++|+|.+.|....|
T Consensus 122 cE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg 166 (219)
T KOG0081|consen 122 CENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTG 166 (219)
T ss_pred cCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccC
Confidence 3566 788887763 1457889999999999998865543
No 461
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=26.46 E-value=1.6e+02 Score=31.01 Aligned_cols=45 Identities=22% Similarity=0.320 Sum_probs=37.4
Q ss_pred ccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 590 PNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 590 ~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
+|++++|+-.--+.+.|..+..+.-++++++. .+||+|||..+|-
T Consensus 117 vdi~~ia~pv~kwavtv~epalvp~v~qkafhlmrs~rpgpvlidlp~dv 166 (592)
T COG3960 117 VDIEAIAKPVSKWAVTVREPALVPRVLQQAFHLMRSGRPGPVLIDLPFDV 166 (592)
T ss_pred hhHHHhhhhhhhhhhhhcchhhhHHHHHHHHHHHhcCCCCCeEEecccce
Confidence 79999999888788888888888888888774 5789999887764
No 462
>PLN02537 diaminopimelate decarboxylase
Probab=26.37 E-value=2.8e+02 Score=30.34 Aligned_cols=77 Identities=14% Similarity=0.064 Sum_probs=52.5
Q ss_pred CCcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeC
Q 048725 528 GDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVT 607 (661)
Q Consensus 528 GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~ 607 (661)
|.|.+.-+..|+..+...+.+--.+|+++..-. .+..+.|...|+. ..++
T Consensus 66 G~~~~~~S~~E~~~al~~G~~~~~ii~~g~~k~-----------------------------~~~l~~a~~~gv~-i~id 115 (410)
T PLN02537 66 GCGAVLVSGNELRLALRAGFDPTRCIFNGNGKL-----------------------------LEDLVLAAQEGVF-VNVD 115 (410)
T ss_pred CCCEEEeCHHHHHHHHHcCCCcceEEEECCCCC-----------------------------HHHHHHHHHCCCE-EEEC
Confidence 555666678999999888888888888854310 2344566777884 7899
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEEeCC
Q 048725 608 RKADLRAAIQTMLDTPGPYLLDVIFPH 634 (661)
Q Consensus 608 ~~~el~~al~~a~~~~gp~lIeV~~~~ 634 (661)
+.+||+...+.+.+.+.+.=|.+++++
T Consensus 116 s~~el~~l~~~a~~~~~~~~v~lRvnp 142 (410)
T PLN02537 116 SEFDLENIVEAARIAGKKVNVLLRINP 142 (410)
T ss_pred CHHHHHHHHHHHHhcCCCceEEEEECC
Confidence 999998766555444444445556554
No 463
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=26.33 E-value=98 Score=28.96 Aligned_cols=55 Identities=27% Similarity=0.351 Sum_probs=39.7
Q ss_pred HHHHHHCCCCE----EEeccCCCcHHHHH-HHHcCCC----------CeEEccCChhHHHHHHHHHHHHh
Q 048725 95 VEALERQGVTD----VFAYPGGASMEIHQ-ALTRSNN----------IRNVLPRHEQGGIFAAEGYARSS 149 (661)
Q Consensus 95 v~~L~~~GV~~----vFg~PG~~~~~l~~-aL~~~~~----------i~~v~~~hE~~A~~~A~Gyar~t 149 (661)
.+.|+++|++. ++-+||....|+.- .|.+... |+=-...+|..+...+.|..+++
T Consensus 35 ~~~l~~~G~~~~~i~vv~VPGa~EiPl~a~~La~~~~yDAvv~lG~VIrG~T~Hfd~Va~~~~~gl~~vs 104 (152)
T COG0054 35 VDALKRHGADVDNIDVVRVPGAFEIPLAAKKLARTGKYDAVVALGAVIRGETYHFDYVANEVARGLMDVS 104 (152)
T ss_pred HHHHHHcCCCcccceEEEeCCcchhHHHHHHHHhcCCcceEEEEeeEEeCCCccHHHHHHHHHHHHHHHH
Confidence 46788889664 99999999999853 3555442 33334567888888888888875
No 464
>PRK13683 hypothetical protein; Provisional
Probab=26.24 E-value=95 Score=25.93 Aligned_cols=31 Identities=19% Similarity=0.300 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEEeCCCCC
Q 048725 607 TRKADLRAAIQTMLDTPGPYLLDVIFPHQEH 637 (661)
Q Consensus 607 ~~~~el~~al~~a~~~~gp~lIeV~~~~~~~ 637 (661)
++.+.+-+-+..+++++.|.++|..+++.++
T Consensus 23 edA~alYq~I~~am~sg~P~llELtCek~~~ 53 (87)
T PRK13683 23 EDAEALYQQIRQAMRSGNPRLLELTCEKVED 53 (87)
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEecCcCC
Confidence 4555666677788889999999999998664
No 465
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=25.65 E-value=2e+02 Score=31.10 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHh--CCCcEEEEcCCcc--chHHHHHHHHHHhCCCee
Q 048725 278 VHLEQIVRLISE--SKKPVLYVGGGCL--NSSEELRKFVELTGIPVA 320 (661)
Q Consensus 278 ~~l~~~~~~L~~--AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~ 320 (661)
..++++.+.+.+ .+|++|+.|.... +..+.+.+..+..++.+.
T Consensus 12 g~l~~l~~~l~~~~~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~ 58 (376)
T cd08193 12 GSLARLGELLAALGAKRVLVVTDPGILKAGLIDPLLASLEAAGIEVT 58 (376)
T ss_pred CHHHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEE
Confidence 456666666654 5888888887653 356778777777777553
No 466
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=25.51 E-value=99 Score=28.52 Aligned_cols=44 Identities=27% Similarity=0.376 Sum_probs=30.0
Q ss_pred ccCCCCCCCcHHHHHHHHHHHCCCC----EEEeccCCCcHHHHH-HHHc
Q 048725 80 SRFAPDQPRKGADILVEALERQGVT----DVFAYPGGASMEIHQ-ALTR 123 (661)
Q Consensus 80 ~~~~~~~~~~gad~lv~~L~~~GV~----~vFg~PG~~~~~l~~-aL~~ 123 (661)
+||...-.-.--+-..+.|+++|+. .+|=+||+...|+.- .|.+
T Consensus 8 s~~n~~i~~~L~~ga~~~l~~~g~~~~~i~v~~VPGa~EiP~a~~~l~~ 56 (138)
T TIGR00114 8 ARFNRDITDMLLKGAIDALKRLGAEVDNIDVIWVPGAFELPLAVKKLAE 56 (138)
T ss_pred ecCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHh
Confidence 5665532222234455789999987 799999999999965 3444
No 467
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=25.34 E-value=1.3e+02 Score=26.53 Aligned_cols=76 Identities=22% Similarity=0.288 Sum_probs=39.9
Q ss_pred ccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeee--C---
Q 048725 533 IMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQV--T--- 607 (661)
Q Consensus 533 ~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v--~--- 607 (661)
+-+..+|..+++.|... |+||+--+ + ..+.|. .-+..+.|+++|+.++.+ .
T Consensus 14 Q~~~~d~~~la~~Gfkt---VInlRpd~------------E----~~~qp~-----~~~~~~~a~~~Gl~y~~iPv~~~~ 69 (110)
T PF04273_consen 14 QPSPEDLAQLAAQGFKT---VINLRPDG------------E----EPGQPS-----SAEEAAAAEALGLQYVHIPVDGGA 69 (110)
T ss_dssp S--HHHHHHHHHCT--E---EEE-S-TT------------S----TTT-T------HHCHHHHHHHCT-EEEE----TTT
T ss_pred CCCHHHHHHHHHCCCcE---EEECCCCC------------C----CCCCCC-----HHHHHHHHHHcCCeEEEeecCCCC
Confidence 45677888888877542 45665311 0 001111 136789999999988855 1
Q ss_pred -CHHHHHHHHHHHHh-CCCcEEEEEEeC
Q 048725 608 -RKADLRAAIQTMLD-TPGPYLLDVIFP 633 (661)
Q Consensus 608 -~~~el~~al~~a~~-~~gp~lIeV~~~ 633 (661)
+.++++ ++.++++ .++|+++.+.+-
T Consensus 70 ~~~~~v~-~f~~~l~~~~~Pvl~hC~sG 96 (110)
T PF04273_consen 70 ITEEDVE-AFADALESLPKPVLAHCRSG 96 (110)
T ss_dssp --HHHHH-HHHHHHHTTTTSEEEE-SCS
T ss_pred CCHHHHH-HHHHHHHhCCCCEEEECCCC
Confidence 333333 4555565 588999998763
No 468
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=25.29 E-value=2.4e+02 Score=30.56 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHh-CCCcEEEEcCCcc---chHHHHHHHHHHhCCCee
Q 048725 278 VHLEQIVRLISE-SKKPVLYVGGGCL---NSSEELRKFVELTGIPVA 320 (661)
Q Consensus 278 ~~l~~~~~~L~~-AkrPvIv~G~g~~---~a~~~l~~lae~lg~PV~ 320 (661)
..++++.+.+++ .+|++||.|.+.. +..+.+.+..+..|+.+.
T Consensus 12 g~l~~l~~~~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~ 58 (380)
T cd08185 12 GKLNELGEEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVV 58 (380)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEE
Confidence 456666666654 4789999987762 356778887787787663
No 469
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=25.27 E-value=2.1e+02 Score=31.17 Aligned_cols=43 Identities=9% Similarity=0.141 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHh--CCCcEEEEcCCcc--chHHHHHHHHHHhCCCe
Q 048725 277 EVHLEQIVRLISE--SKKPVLYVGGGCL--NSSEELRKFVELTGIPV 319 (661)
Q Consensus 277 ~~~l~~~~~~L~~--AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV 319 (661)
...++++.+.+++ .+|++|+.|.... +..+.+.+..+..|+.+
T Consensus 16 ~g~~~~l~~~~~~~g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~ 62 (383)
T PRK09860 16 ADSLTDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNIFS 62 (383)
T ss_pred cCHHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeE
Confidence 3456666666654 4788888886553 45677888888888764
No 470
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=25.20 E-value=3.5e+02 Score=28.34 Aligned_cols=100 Identities=13% Similarity=0.123 Sum_probs=58.0
Q ss_pred cHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCC-------CeEEccCC-----------hhHHHH-HHHHHHH-H
Q 048725 89 KGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNN-------IRNVLPRH-----------EQGGIF-AAEGYAR-S 148 (661)
Q Consensus 89 ~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~-------i~~v~~~h-----------E~~A~~-~A~Gyar-~ 148 (661)
...+.+++.|++.|-=++||.-++....++|+.+..+. +..+..-. |..... ..+=.+. .
T Consensus 50 ~av~~~~~~l~~ggrI~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~iiagG~~a~~~a~e~~ed~~~~~~~~l~~~~l 129 (299)
T PRK05441 50 AAVDAAAAALRQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVVGLIAGGEKALTKAVEGAEDDAELGAADLKAINL 129 (299)
T ss_pred HHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhCcCccCCCchhceeeecCCcHHHHhcccccCChHHHHHHHHHhcCC
Confidence 34678889999988878888888877777777654332 11121111 111111 1111111 2
Q ss_pred hCCcEEEEEccchh-hHHHHHHHHHhhhCCCcEEEEecCCCC
Q 048725 149 SGKPGICIATSGPG-ATNLVSGLADALLDSVPLVAITGQVPR 189 (661)
Q Consensus 149 tg~~gv~~~tsGpG-~~N~l~gl~~A~~~~iPll~ItG~~p~ 189 (661)
+. --+++.-|..| .-+.+.++..|...+.++|.||+....
T Consensus 130 ~~-~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s 170 (299)
T PRK05441 130 TA-KDVVVGIAASGRTPYVIGALEYARERGALTIGISCNPGS 170 (299)
T ss_pred CC-CCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 22 22333444444 445677888899999999999986543
No 471
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=24.98 E-value=1.3e+02 Score=29.29 Aligned_cols=84 Identities=8% Similarity=0.015 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHHHhCC-CcEEEEcC-Ccc--chH-----HHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCC
Q 048725 274 EPSEVHLEQIVRLISESK-KPVLYVGG-GCL--NSS-----EELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHG 344 (661)
Q Consensus 274 ~~~~~~l~~~~~~L~~Ak-rPvIv~G~-g~~--~a~-----~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g 344 (661)
...++.++.+++.|+++. +++++..+ +.. ... .-..++++..|++++..-.....--... -|. ...
T Consensus 19 ~T~P~vv~avv~~l~~~g~~~i~i~e~~~~~~~~~~~~~~~~G~~~~~~~~g~~~v~~~~~~~~~~~~~---~~~--~~~ 93 (206)
T PF04015_consen 19 TTHPEVVRAVVEMLKEAGAKEIIIAESPGSGAADTREVFKRSGYEEIAEEYGAELVDLDDEPWVEVPLP---GGE--HLK 93 (206)
T ss_pred cCCHHHHHHHHHHHHHcCCCceEEEeCCCcchHhHHHHHHHcchhhHHHhcCCcEEEccCCcccceecc---CCe--eee
Confidence 347889999999997653 33444432 222 111 1245677777887765322211100000 000 111
Q ss_pred cHHHHHhhhcCCEEEEeC
Q 048725 345 TVYANYAVDKSDLLLAFG 362 (661)
Q Consensus 345 ~~~a~~~l~~aDlvL~vG 362 (661)
.......+.++|++|.+=
T Consensus 94 ~~~v~~~~~eaD~iInvp 111 (206)
T PF04015_consen 94 EFKVPRILLEADVIINVP 111 (206)
T ss_pred eEEhhHHHHhCCEEEEec
Confidence 223455677899999883
No 472
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=24.89 E-value=1.7e+02 Score=32.71 Aligned_cols=117 Identities=12% Similarity=0.153 Sum_probs=63.7
Q ss_pred CCeEEecCCCCcccchHHHHHHhhhhCCCCc-EEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhh
Q 048725 492 PRQWLTSGGLGAMGFGLPAAIGAAVANPDAI-IVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFY 570 (661)
Q Consensus 492 p~~~~~~~~~g~mG~~lpaAiGaala~p~~~-vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~ 570 (661)
.-+|+..++-.+-.|+ ..|+|.-- +++ |.++++-=+..|.+..+.+|.....|+++|= |...+.++
T Consensus 51 GIk~I~~RnEqaA~yA-A~A~gyLt---~kpGV~lVvsGPGl~hal~gv~NA~~n~wPll~Ig------Gsa~~~~~--- 117 (571)
T KOG1185|consen 51 GIKFIGTRNEQAAVYA-ASAYGYLT---GKPGVLLVVSGPGLTHALAGVANAQMNCWPLLLIG------GSASTLLE--- 117 (571)
T ss_pred CCeEeecccHHHHHHH-HHHhhhhc---CCCeEEEEecCChHHHHHHHhhhhhhccCcEEEEe------cccchhhh---
Confidence 4556655553333322 12233222 344 4455565688999999999999999987762 11111110
Q ss_pred cccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeC
Q 048725 571 KANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFP 633 (661)
Q Consensus 571 ~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~ 633 (661)
+.-.++. .|-..+.+.|==...|+++..++...+++|++ .+|++.||+..|
T Consensus 118 ~rGafQe------------~dQvel~rp~~K~~~r~~~~~~I~~~i~kA~r~a~~G~PG~~yvD~P~d 173 (571)
T KOG1185|consen 118 NRGAFQE------------LDQVELFRPLCKFVARPTSVRDIPPTIRKAVRAAMSGRPGPVYVDLPAD 173 (571)
T ss_pred ccccccc------------ccHHhhhhhhhhhccCCCChhhccHHHHHHHHHHhcCCCCceEEecccc
Confidence 0000000 23333333332234577777777666666554 578999999887
No 473
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=24.78 E-value=6.7e+02 Score=24.58 Aligned_cols=87 Identities=14% Similarity=0.048 Sum_probs=47.7
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCC---------cHHHHHHHHcCC---CCeEEccCCh--hHHHHHHHHHHHHhCCc
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGA---------SMEIHQALTRSN---NIRNVLPRHE--QGGIFAAEGYARSSGKP 152 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~---------~~~l~~aL~~~~---~i~~v~~~hE--~~A~~~A~Gyar~tg~~ 152 (661)
....+..+++.|.+.|-+++.-+-|.. ...+.+++.+++ ...++...+. ..+--.+..+-....++
T Consensus 100 ~~~~g~~~~~~l~~~g~~~i~~l~~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 179 (267)
T cd06283 100 NYEAAKEAVDHLIEKGYERILFVTEPLDEISPRMERYEGFKEALAEHGIGVNEELIEIDDEDADELDERLRQLLNKPKKK 179 (267)
T ss_pred cHHHHHHHHHHHHHcCCCcEEEEecCccccccHHHHHHHHHHHHHHcCCCCCcceeEecccchHHHHHHHHHHHcCCCCC
Confidence 356788999999999988865553322 134556666543 1233322221 12222222322222357
Q ss_pred EEEEEccchhhHHHHHHHHHh
Q 048725 153 GICIATSGPGATNLVSGLADA 173 (661)
Q Consensus 153 gv~~~tsGpG~~N~l~gl~~A 173 (661)
.++++.+...+..++.++.++
T Consensus 180 ~ai~~~~d~~a~g~~~~l~~~ 200 (267)
T cd06283 180 TAIFAANGLILLEVLKALKEL 200 (267)
T ss_pred CEEEEcCcHHHHHHHHHHHHc
Confidence 778787776666666666554
No 474
>PRK02947 hypothetical protein; Provisional
Probab=24.75 E-value=1.7e+02 Score=29.71 Aligned_cols=97 Identities=20% Similarity=0.255 Sum_probs=52.2
Q ss_pred cHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcC-CC---CeEEc----cCChhH----HHHHHHHHHH-------Hh
Q 048725 89 KGADILVEALERQGVTDVFAYPGGASMEIHQALTRS-NN---IRNVL----PRHEQG----GIFAAEGYAR-------SS 149 (661)
Q Consensus 89 ~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~-~~---i~~v~----~~hE~~----A~~~A~Gyar-------~t 149 (661)
..++.|++.|.+.+-=++||.-++.. +...+... .. ++.+. ..+... +.....||.. .+
T Consensus 28 ~aa~lla~~i~~a~~I~i~G~G~S~~--vA~~~~~rlg~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (246)
T PRK02947 28 KAADLIADSIRNGGLIYVFGTGHSHI--LAEEVFYRAGGLAPVNPILEPSLMLHEGAVASSYLERVEGYAKAILDRYDIR 105 (246)
T ss_pred HHHHHHHHHHHCCCEEEEEcCcHHHH--HHHHhccccccCcccCCCCCHHHhccccHHHHHHhhhcccHHHHHHHHcCCC
Confidence 46788999998888888888776554 33333211 00 11110 001111 1112122221 12
Q ss_pred -CCcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEecCCC
Q 048725 150 -GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVP 188 (661)
Q Consensus 150 -g~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p 188 (661)
+...+++..+ .-.-+.+..+-.|...++|+|.||+...
T Consensus 106 ~~Dv~i~iS~s-G~t~~~i~~~~~a~~~g~~vI~iT~~~~ 144 (246)
T PRK02947 106 PGDVLIVVSNS-GRNPVPIEMALEAKERGAKVIAVTSLAY 144 (246)
T ss_pred CCCEEEEEeCC-CCCHHHHHHHHHHHHCCCEEEEEcCCcc
Confidence 2233333333 3455677788889999999999998653
No 475
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=24.27 E-value=1e+02 Score=33.81 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=34.1
Q ss_pred hHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEe
Q 048725 507 GLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLN 555 (661)
Q Consensus 507 ~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~N 555 (661)
++++++||+++ +.+++..+==.|+..-...|..+.-.++|+++++.|
T Consensus 62 A~~~~~GAs~a--GaRa~TaTS~~Gl~lm~E~l~~aag~~lP~V~vv~~ 108 (394)
T PRK08367 62 AISACVGASAA--GVRTFTATASQGLALMHEVLFIAAGMRLPIVMAIGN 108 (394)
T ss_pred HHHHHHHHHhh--CCCeEeeeccchHHHHhhHHHHHHHccCCEEEEECC
Confidence 78899999988 455555554455555556788899999998888743
No 476
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=24.25 E-value=3.3e+02 Score=22.68 Aligned_cols=47 Identities=21% Similarity=0.245 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHhCCCeeecCCC-CCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCC
Q 048725 304 SSEELRKFVELTGIPVASTLMG-LGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRF 365 (661)
Q Consensus 304 a~~~l~~lae~lg~PV~tt~~g-kg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~ 365 (661)
+.+.|.+.++++|+.+-....| .|+- ++| ..+-++++|+||.+|..-
T Consensus 16 Aae~L~~aA~~~G~~i~VE~qg~~g~~---~~l------------t~~~i~~Ad~viia~d~~ 63 (85)
T TIGR00829 16 AAEALEKAAKKRGWEVKVETQGSVGAQ---NAL------------TAEDIAAADGVILAADRE 63 (85)
T ss_pred HHHHHHHHHHHCCCeEEEEecCCcCcc---CCC------------CHHHHHhCCEEEEeccCC
Confidence 4688999999999999654433 3322 222 134578999999999764
No 477
>PRK03202 6-phosphofructokinase; Provisional
Probab=24.15 E-value=1.3e+02 Score=31.96 Aligned_cols=45 Identities=22% Similarity=0.329 Sum_probs=35.8
Q ss_pred ccCCCCCCCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcC
Q 048725 80 SRFAPDQPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRS 124 (661)
Q Consensus 80 ~~~~~~~~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~ 124 (661)
+|+.+......-+.+++.|++++++.++.+-|+.++.-...|.+.
T Consensus 71 sR~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~~L~e~ 115 (320)
T PRK03202 71 ARFPEFKDEEGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTEH 115 (320)
T ss_pred CCCCCcCCHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhc
Confidence 344443333577899999999999999999999999888888763
No 478
>PRK10586 putative oxidoreductase; Provisional
Probab=24.13 E-value=2.2e+02 Score=30.73 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHh--CCCcEEEEcCCccc-hHHHHHHHHHHhCCCe
Q 048725 277 EVHLEQIVRLISE--SKKPVLYVGGGCLN-SSEELRKFVELTGIPV 319 (661)
Q Consensus 277 ~~~l~~~~~~L~~--AkrPvIv~G~g~~~-a~~~l~~lae~lg~PV 319 (661)
+..++++.+.+++ .+|++|+.|..... ..+.+.+..+..++.+
T Consensus 19 ~ga~~~l~~~~~~~g~~~~lvv~g~~~~~~~~~~~~~~l~~~~~~~ 64 (362)
T PRK10586 19 PGSIDHLHDFFTDEQLSRAVWIYGERAIAAAQPYLPPAFELPGAKH 64 (362)
T ss_pred cCHHHHHHHHHHhcCCCeEEEEEChHHHHHHHHHHHHHHHHcCCeE
Confidence 4567777777765 47899888877654 3455665556656543
No 479
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=24.12 E-value=1.9e+02 Score=29.63 Aligned_cols=69 Identities=23% Similarity=0.258 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCccchHHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCCcHHHHHhhhcC
Q 048725 276 SEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKS 355 (661)
Q Consensus 276 ~~~~l~~~~~~L~~AkrPvIv~G~g~~~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~a 355 (661)
+.+.+++++++|.+|+|..|+.-+........+.....++|.++.... ..+........+.+-
T Consensus 114 ~~~~l~~~~~~i~~a~~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~~-----------------d~~~~~~~~~~~~~~ 176 (278)
T PRK11557 114 SEEKLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKIGINAVAER-----------------DMHALLATVQALSPD 176 (278)
T ss_pred CHHHHHHHHHHHhcCCeEEEEecChhHHHHHHHHHHHhhCCCeEEEcC-----------------ChHHHHHHHHhCCCC
Q ss_pred CEEEEe
Q 048725 356 DLLLAF 361 (661)
Q Consensus 356 DlvL~v 361 (661)
|++|++
T Consensus 177 Dv~I~i 182 (278)
T PRK11557 177 DLLLAI 182 (278)
T ss_pred CEEEEE
No 480
>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]
Probab=23.99 E-value=9.2e+02 Score=25.92 Aligned_cols=99 Identities=18% Similarity=0.144 Sum_probs=54.1
Q ss_pred cccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCC
Q 048725 503 AMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDP 582 (661)
Q Consensus 503 ~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p 582 (661)
.+|...+.+=| -+.-.+.++|+|.|. .-.+.. +.+.|+..+-.+++.+..+..-..++.
T Consensus 166 VLGC~~~~~~~-----~~~d~~l~vg~G~FH--~lg~~i--~~~~~v~~~dP~s~~~~~~~~~~~~~l------------ 224 (347)
T COG1736 166 VLGCNFSVLEG-----VDADAVLYVGSGRFH--PLGLAI--RTEKPVFAIDPYSGKVREEDPEADRFL------------ 224 (347)
T ss_pred eeccccccCCc-----cccceEEEEcCCccC--hhhccc--ccCCcEEEEcCCCCceeecchhhhHHH------------
Confidence 45554444433 134578899999953 333333 257888888888777654421111111
Q ss_pred CCcccCCccHHHHHhHcCCCEeee--------CCHHHHHHHHHHHHhCCCcEEE
Q 048725 583 SRESEIFPNMLKFAEACGIPGAQV--------TRKADLRAAIQTMLDTPGPYLL 628 (661)
Q Consensus 583 ~~~~~~~~d~~~~A~a~G~~~~~v--------~~~~el~~al~~a~~~~gp~lI 628 (661)
...|+++.+++.+..+-+ ...+.++...+...+.++..++
T Consensus 225 ------~~R~~~i~~a~~a~~~giiv~tk~gQ~r~~~~~~l~k~~~~~g~~~~l 272 (347)
T COG1736 225 ------RKRYAAISKALDAKSFGIIVSTKGGQRRLEVARELVKLLKEAGKEVYL 272 (347)
T ss_pred ------HHHHHHHHHHhcCCeEEEEEecccccCcHHHHHHHHHHHHHcCCceEE
Confidence 147888888888765422 2333344444444445555555
No 481
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=23.77 E-value=2.3e+02 Score=30.61 Aligned_cols=43 Identities=14% Similarity=0.276 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHh--CCCcEEEEcCCccc--hHHHHHHHHHHhCCCee
Q 048725 278 VHLEQIVRLISE--SKKPVLYVGGGCLN--SSEELRKFVELTGIPVA 320 (661)
Q Consensus 278 ~~l~~~~~~L~~--AkrPvIv~G~g~~~--a~~~l~~lae~lg~PV~ 320 (661)
..++++.+.+++ .+|++|+.|.+... ..+.+.+..+..|+.+.
T Consensus 9 g~~~~l~~~~~~~~~~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~ 55 (375)
T cd08194 9 GAVDETGAVLADLGGKRPLIVTDKVMVKLGLVDKLTDSLKKEGIESA 55 (375)
T ss_pred CHHHHHHHHHHHcCCCeEEEEcCcchhhcchHHHHHHHHHHCCCeEE
Confidence 456666666653 57899999877653 45677777777787653
No 482
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=23.62 E-value=3.7e+02 Score=25.46 Aligned_cols=88 Identities=11% Similarity=0.041 Sum_probs=52.0
Q ss_pred HHHHHHHHHHCCCCEEEeccCCCcHHHHHHH----HcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 048725 91 ADILVEALERQGVTDVFAYPGGASMEIHQAL----TRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNL 166 (661)
Q Consensus 91 ad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL----~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~ 166 (661)
-+.+++.|.+.+-=++||+-++ ..+...+ ... +++.+...+ .. ....+.+-.+++.+...-..+.
T Consensus 23 l~~~~~~i~~a~~I~i~G~G~S--~~~A~~~~~~l~~~-g~~~~~~~~-~~-------~~~~~~~D~vI~iS~sG~t~~~ 91 (179)
T cd05005 23 LDKLISAILNAKRIFVYGAGRS--GLVAKAFAMRLMHL-GLNVYVVGE-TT-------TPAIGPGDLLIAISGSGETSSV 91 (179)
T ss_pred HHHHHHHHHhCCeEEEEecChh--HHHHHHHHHHHHhC-CCeEEEeCC-CC-------CCCCCCCCEEEEEcCCCCcHHH
Confidence 3567888888766666776444 3344333 322 354444332 11 1122333334444444456777
Q ss_pred HHHHHHhhhCCCcEEEEecCCCC
Q 048725 167 VSGLADALLDSVPLVAITGQVPR 189 (661)
Q Consensus 167 l~gl~~A~~~~iPll~ItG~~p~ 189 (661)
+..+-.|...+.|+|.||+....
T Consensus 92 i~~~~~ak~~g~~iI~IT~~~~s 114 (179)
T cd05005 92 VNAAEKAKKAGAKVVLITSNPDS 114 (179)
T ss_pred HHHHHHHHHCCCeEEEEECCCCC
Confidence 88888899999999999986654
No 483
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=23.47 E-value=85 Score=27.05 Aligned_cols=31 Identities=35% Similarity=0.463 Sum_probs=21.2
Q ss_pred CCcEEEEcCCccchHHHHHHHHHHhCCCeeecC
Q 048725 291 KKPVLYVGGGCLNSSEELRKFVELTGIPVASTL 323 (661)
Q Consensus 291 krPvIv~G~g~~~a~~~l~~lae~lg~PV~tt~ 323 (661)
-+.+|++|+. .-.+++.++|+..++||+.|.
T Consensus 62 i~~iIltg~~--~~~~~v~~la~~~~i~vi~t~ 92 (105)
T PF07085_consen 62 IACIILTGGL--EPSEEVLELAKELGIPVISTP 92 (105)
T ss_dssp ECEEEEETT------HHHHHHHHHHT-EEEE-S
T ss_pred CCEEEEeCCC--CCCHHHHHHHHHCCCEEEEEC
Confidence 4678888743 336789999999999999875
No 484
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=23.23 E-value=7.1e+02 Score=24.54 Aligned_cols=89 Identities=13% Similarity=0.170 Sum_probs=47.8
Q ss_pred EEcCCccc-hHHHHHHHHHHhCCCee---ecCCCCCCCCCCCCCCCcccCCCCcHHHHHhh--hcCCEEEEeCCCCCCCc
Q 048725 296 YVGGGCLN-SSEELRKFVELTGIPVA---STLMGLGSFPGTDELSLQMLGMHGTVYANYAV--DKSDLLLAFGVRFDDRV 369 (661)
Q Consensus 296 v~G~g~~~-a~~~l~~lae~lg~PV~---tt~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l--~~aDlvL~vG~~~~~~~ 369 (661)
++|.+..+ +.....+..+.....-+ +|++|.-++-.-..++ .-.+++ .+.|+||-+|++++...
T Consensus 15 ~~~~~~~r~~~a~a~~~~~~~~~n~~~~~~twmG~p~~k~p~D~~----------~yQellw~~~P~lvIE~Gs~~GGSa 84 (237)
T COG3510 15 FAGQMIYRPADALAEEYHKWYYGNDVTYNYTWMGIPCIKSPSDMW----------NYQELLWELQPSLVIEFGSRHGGSA 84 (237)
T ss_pred hhccccccchHHHHHHHHHHHhccCceEEeeEecccccCCHHHHH----------HHHHHHHhcCCceeEeeccccCchh
Confidence 45555542 23333444444444433 3678876653322211 011222 58999999999986432
Q ss_pred CC---cccccCCCCeEEEEcCCchhhcc
Q 048725 370 TG---KLEAFASRAKIVHIDIDSAEIGK 394 (661)
Q Consensus 370 t~---~~~~~~~~~~vi~Id~d~~~i~~ 394 (661)
.. ..-.+-++.+++-||+|-..+++
T Consensus 85 l~fA~~m~s~Gq~~kvl~vdIdi~~~~p 112 (237)
T COG3510 85 LFFANMMISIGQPFKVLGVDIDIKPLDP 112 (237)
T ss_pred hhhhHhHHhcCCCceEEEEecccCcCCh
Confidence 11 11223456789999988766554
No 485
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=23.21 E-value=2.2e+02 Score=30.83 Aligned_cols=43 Identities=16% Similarity=0.256 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHh--CCCcEEEEcCCcc--chHHHHHHHHHHhCCCe
Q 048725 277 EVHLEQIVRLISE--SKKPVLYVGGGCL--NSSEELRKFVELTGIPV 319 (661)
Q Consensus 277 ~~~l~~~~~~L~~--AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV 319 (661)
...++++.+.+++ .+|++|+.|.+.. ...+.+.+..+..|+.+
T Consensus 13 ~g~l~~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~ 59 (377)
T cd08176 13 AGAIKEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDY 59 (377)
T ss_pred cCHHHHHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeE
Confidence 3456666666654 3788888887664 35677888888878765
No 486
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=23.06 E-value=3.3e+02 Score=24.87 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=18.0
Q ss_pred EEcCCccchHHHHHHHHHHhCCCee
Q 048725 296 YVGGGCLNSSEELRKFVELTGIPVA 320 (661)
Q Consensus 296 v~G~g~~~a~~~l~~lae~lg~PV~ 320 (661)
+.|.--.+-++++.+-|+..+.||.
T Consensus 5 LsGEIHtdWRe~I~~ga~~~~L~v~ 29 (144)
T TIGR03646 5 LAGEIHTDWREEIKEGAKSKNLPIV 29 (144)
T ss_pred EcCcccchHHHHHHHHHHHcCCCeE
Confidence 4443334667889999999999983
No 487
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=22.74 E-value=6.4e+02 Score=27.27 Aligned_cols=41 Identities=15% Similarity=0.243 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCccc------hHHHHHHHHHHhC
Q 048725 276 SEVHLEQIVRLISESKKPVLYVGGGCLN------SSEELRKFVELTG 316 (661)
Q Consensus 276 ~~~~l~~~~~~L~~AkrPvIv~G~g~~~------a~~~l~~lae~lg 316 (661)
..+.++++++.+.++++++|+.|.|... ...++..++..++
T Consensus 227 ~~~~i~~la~~l~~a~~~~i~~g~g~~~~~~~~~~~~~~~~l~~~l~ 273 (421)
T TIGR03129 227 PKEKILELAEILKNAKFGVIFFGLGLTSSLGKHRNVEIAIELVKDLN 273 (421)
T ss_pred CHHHHHHHHHHHHhCCceEEEEecccccccCcchHHHHHHHHHHHhC
Confidence 3677999999999999999999977631 2345555665554
No 488
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=22.70 E-value=1.3e+02 Score=27.88 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=30.0
Q ss_pred cccCCCCCCCcHHHHHHHHHHHCCCC----EEEeccCCCcHHHHH-HHHc
Q 048725 79 SSRFAPDQPRKGADILVEALERQGVT----DVFAYPGGASMEIHQ-ALTR 123 (661)
Q Consensus 79 ~~~~~~~~~~~gad~lv~~L~~~GV~----~vFg~PG~~~~~l~~-aL~~ 123 (661)
++||...-.-.--+--.+.|+++|++ .++-+||...+|+.- .|.+
T Consensus 14 ~s~fn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~ 63 (141)
T PLN02404 14 VARFNEIITKNLLEGALETFKRYSVKEENIDVVWVPGSFEIPVVAQRLAK 63 (141)
T ss_pred EecCcHHHHHHHHHHHHHHHHHcCCCccceEEEEcCcHHHHHHHHHHHHh
Confidence 35666542212223345788999996 899999999999865 3443
No 489
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=22.56 E-value=1.5e+02 Score=31.73 Aligned_cols=56 Identities=11% Similarity=0.154 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCccchHHHHHHHHHHhCCCeeecCCCCCCCCCCCCC
Q 048725 278 VHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLGSFPGTDEL 335 (661)
Q Consensus 278 ~~l~~~~~~L~~AkrPvIv~G~g~~~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl 335 (661)
.....++++|. ++.+.|+|..+......+..+++.+++|.++.......+...+++
T Consensus 50 ~~~~~~c~ll~--~~V~aiiGp~~s~~~~~~~~~~~~~~iP~i~~~~~~~~l~~~~~~ 105 (382)
T cd06380 50 ALTNAICSQLS--RGVFAIFGSYDKSSVNTLTSYSDALHVPFITPSFPTNDLDDGNQF 105 (382)
T ss_pred HHHHHHHHHHh--cCcEEEEecCcHHHHHHHHHHHhcCCCCeEecCCCcccCCCCCcE
Confidence 45667788884 468888998776667788999999999999864433333334443
No 490
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=22.54 E-value=4.4e+02 Score=26.59 Aligned_cols=85 Identities=14% Similarity=0.158 Sum_probs=48.9
Q ss_pred CcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 048725 88 RKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLV 167 (661)
Q Consensus 88 ~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l 167 (661)
..-++.+++.+++.|+++|+.+-|-.... +. .+.+.+.++....--...+...... +.+ .|....+
T Consensus 93 ~~~a~~il~~~~~~gv~~Ii~Lgg~~~~~------~~--~~v~~~at~~~~~~~l~~~~~~~~~-g~i-----~G~~g~l 158 (238)
T TIGR00161 93 YDMTNAIVEWMVRNNSRELISFNGMVVRE------KS--QPVFGAANSQELIERLKDLIEIFPF-GNL-----NGISGTL 158 (238)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeCccCCC------CC--CcEEEEECCHHHHHHHHHhcCcCCC-CEE-----echhHHH
Confidence 35789999999999999999998866531 22 3444443332222211211111111 222 2333443
Q ss_pred HHHHHhhhCCCcEEEEecCCC
Q 048725 168 SGLADALLDSVPLVAITGQVP 188 (661)
Q Consensus 168 ~gl~~A~~~~iPll~ItG~~p 188 (661)
+..|...++|-+.+-+...
T Consensus 159 --l~~a~~~gi~~i~Ll~et~ 177 (238)
T TIGR00161 159 --LTRCAVNDIPAICLLAETL 177 (238)
T ss_pred --HHHHHHcCCCEEEEEEeCC
Confidence 3367788999999887663
No 491
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=22.46 E-value=1.4e+02 Score=30.55 Aligned_cols=45 Identities=18% Similarity=0.311 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCcc-chHHHHHHHHHHhCCCeee
Q 048725 276 SEVHLEQIVRLISESKKPVLYVGGGCL-NSSEELRKFVELTGIPVAS 321 (661)
Q Consensus 276 ~~~~l~~~~~~L~~AkrPvIv~G~g~~-~a~~~l~~lae~lg~PV~t 321 (661)
+.+.+++++++|.+++| |+++|.|.. .....+.....++|.++..
T Consensus 114 d~~~i~~~~~~i~~a~~-I~i~G~G~S~~~a~~~~~~l~~~g~~~~~ 159 (284)
T PRK11302 114 DPSAINRAVDLLTQAKK-ISFFGLGASAAVAHDAQNKFFRFNVPVVY 159 (284)
T ss_pred CHHHHHHHHHHHHcCCe-EEEEEcchHHHHHHHHHHHHHhcCCceEe
No 492
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=22.45 E-value=3.1e+02 Score=22.06 Aligned_cols=46 Identities=13% Similarity=0.251 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCc-cchHHHHHHHHHHhCCCeee
Q 048725 276 SEVHLEQIVRLISESKKPVLYVGGGC-LNSSEELRKFVELTGIPVAS 321 (661)
Q Consensus 276 ~~~~l~~~~~~L~~AkrPvIv~G~g~-~~a~~~l~~lae~lg~PV~t 321 (661)
+.+.+..+++.+.+..-.++|+=+|+ .++-....++|+..|+|+..
T Consensus 16 D~~~i~~~Ld~~~~~~~~~~lvhGga~~GaD~iA~~wA~~~gv~~~~ 62 (71)
T PF10686_consen 16 DHELIWAALDKVHARHPDMVLVHGGAPKGADRIAARWARERGVPVIR 62 (71)
T ss_pred cHHHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHHHCCCeeEE
Confidence 55566666665544333344443455 77888889999999999874
No 493
>PLN02846 digalactosyldiacylglycerol synthase
Probab=22.39 E-value=6.8e+02 Score=28.10 Aligned_cols=102 Identities=23% Similarity=0.132 Sum_probs=60.2
Q ss_pred EEEEcCCccchHHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcc
Q 048725 294 VLYVGGGCLNSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKL 373 (661)
Q Consensus 294 vIv~G~g~~~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~ 373 (661)
++|+|.|-. .++|+++++.+++.+.. ..| . ....+++..+|+.+.- +........-+
T Consensus 262 l~ivGdGp~--~~~L~~~a~~l~l~~~v-f~G----------------~---~~~~~~~~~~DvFv~p-S~~Et~g~v~l 318 (462)
T PLN02846 262 VDLYGSGED--SDEVKAAAEKLELDVRV-YPG----------------R---DHADPLFHDYKVFLNP-STTDVVCTTTA 318 (462)
T ss_pred EEEECCCcc--HHHHHHHHHhcCCcEEE-ECC----------------C---CCHHHHHHhCCEEEEC-CCcccchHHHH
Confidence 789998843 56789999998875421 111 1 1122467788965543 33322222234
Q ss_pred cccCCCCeEEEEcCCchhhccCCCCcceEeccHHHHHHHHHHHhcC
Q 048725 374 EAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGG 419 (661)
Q Consensus 374 ~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~ 419 (661)
+.+.....+|..|....++=.. ........|..++.+++.+.+..
T Consensus 319 EAmA~G~PVVa~~~~~~~~v~~-~~ng~~~~~~~~~a~ai~~~l~~ 363 (462)
T PLN02846 319 EALAMGKIVVCANHPSNEFFKQ-FPNCRTYDDGKGFVRATLKALAE 363 (462)
T ss_pred HHHHcCCcEEEecCCCcceeec-CCceEecCCHHHHHHHHHHHHcc
Confidence 5666677788887654432222 22333447888888888888764
No 494
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=22.38 E-value=2.5e+02 Score=30.52 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHh-CCCcEEEEcCCcc---chHHHHHHHHHHhCCCee
Q 048725 278 VHLEQIVRLISE-SKKPVLYVGGGCL---NSSEELRKFVELTGIPVA 320 (661)
Q Consensus 278 ~~l~~~~~~L~~-AkrPvIv~G~g~~---~a~~~l~~lae~lg~PV~ 320 (661)
..++++.+.+++ .+|++|+.|.... +..+.+.+..+..|+-+.
T Consensus 15 g~~~~l~~~~~~~~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~ 61 (382)
T cd08187 15 GTESELGKELKKYGKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVV 61 (382)
T ss_pred CHHHHHHHHHHHhCCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEE
Confidence 344455444443 5889999886543 335667777777776553
No 495
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors
Probab=22.36 E-value=1.6e+02 Score=30.30 Aligned_cols=47 Identities=19% Similarity=0.218 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCccchHHHHHHHHHHhCCCeeecCCC
Q 048725 278 VHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMG 325 (661)
Q Consensus 278 ~~l~~~~~~L~~AkrPvIv~G~g~~~a~~~l~~lae~lg~PV~tt~~g 325 (661)
...+.+++++. .+....++|.........+..+++.+++|+++...+
T Consensus 50 ~~~~~~c~l~~-~~~v~ai~G~~~s~~~~~v~~~~~~~~iP~is~~~~ 96 (328)
T cd06351 50 SLLRAVCDLLV-SQGVAAIFGPTSSESASAVQSICDALEIPHISISGG 96 (328)
T ss_pred HHHHHHHHHHh-ccCcEEEECCCCHHHHHHHHHHhccCCCCeEEeecC
Confidence 44667777775 567888999888777778899999999999986544
No 496
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=22.30 E-value=1.3e+02 Score=32.85 Aligned_cols=49 Identities=12% Similarity=0.293 Sum_probs=34.9
Q ss_pred hHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCC
Q 048725 507 GLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQ 557 (661)
Q Consensus 507 ~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~ 557 (661)
++.+|+||+++ +.+++..+-=++|.+-...|..++-..+|+++++.+=.
T Consensus 59 A~~~a~GAs~a--G~Ra~taTSg~G~~lm~E~~~~a~~~e~P~V~~~~~R~ 107 (375)
T PRK09627 59 GISVALGASMS--GVKSMTASSGPGISLKAEQIGLGFIAEIPLVIVNVMRG 107 (375)
T ss_pred HHHHHHHHHhh--CCCEEeecCCchHHHHhhHHHHHHhccCCEEEEEeccC
Confidence 78899999988 45555555444555545557777888899999888743
No 497
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=22.17 E-value=7.5e+02 Score=26.66 Aligned_cols=46 Identities=24% Similarity=0.254 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCccch---HHHHHHHHHHhCCCeeecC
Q 048725 276 SEVHLEQIVRLISESKKPVLYVGGGCLNS---SEELRKFVELTGIPVASTL 323 (661)
Q Consensus 276 ~~~~l~~~~~~L~~AkrPvIv~G~g~~~a---~~~l~~lae~lg~PV~tt~ 323 (661)
+.+.++.+. +...-|.+++.|.|.-+. .-+..+-+.+-|+||+-+.
T Consensus 242 ~~~~i~~a~--~~~g~~GiVie~~G~G~~~~~~~~~i~~~~~~gi~VV~sS 290 (351)
T COG0252 242 SSSLIDSAL--LSSGAKGLVLEGTGSGNVTPALIESIERASKRGIPVVYSS 290 (351)
T ss_pred CHHHHHHHH--HhcCCCEEEEEEECCCCCChHHHHHHHHHHHCCCeEEEEe
Confidence 344454432 567789999998876432 2223333344579997654
No 498
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=22.16 E-value=6e+02 Score=23.06 Aligned_cols=95 Identities=20% Similarity=0.213 Sum_probs=61.0
Q ss_pred CcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccC--ChhHHHHHHHHHHHHhCCcEEEEEccc-hh-h
Q 048725 88 RKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPR--HEQGGIFAAEGYARSSGKPGICIATSG-PG-A 163 (661)
Q Consensus 88 ~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~--hE~~A~~~A~Gyar~tg~~gv~~~tsG-pG-~ 163 (661)
..--+.+++.|.+.|++.|+.+-+. .++...+.+. +++++... +...+..+..|.....+.-.++++..- |- -
T Consensus 24 ~~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~~-~~~~v~~~~~~~G~~~sl~~a~~~~~~~~~vlv~~~D~p~~~ 100 (160)
T PF12804_consen 24 KPLIERVLEALREAGVDDIVVVTGE--EEIYEYLERY-GIKVVVDPEPGQGPLASLLAALSQLPSSEPVLVLPCDQPFLS 100 (160)
T ss_dssp EEHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTTT-TSEEEE-STSSCSHHHHHHHHHHTSTTSSEEEEEETTETTS-
T ss_pred ccHHHHHHHHhhccCCceEEEecCh--HHHHHHHhcc-CceEEEeccccCChHHHHHHHHHhcccCCCcEEEeCCccccC
Confidence 4567899999999999999999998 3566666554 58888776 344555556666555333455554443 34 4
Q ss_pred HHHHHHHHHhhh-CCCcEEEEec
Q 048725 164 TNLVSGLADALL-DSVPLVAITG 185 (661)
Q Consensus 164 ~N~l~gl~~A~~-~~iPll~ItG 185 (661)
.+.+..+.+++. +...+++.+-
T Consensus 101 ~~~l~~l~~~~~~~~~~i~~~~~ 123 (160)
T PF12804_consen 101 PELLRRLLEALEKSPADIVVPVF 123 (160)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred HHHHHHHHHHHhccCCcEEEEEE
Confidence 566777777765 3445555543
No 499
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=22.15 E-value=2.3e+02 Score=29.31 Aligned_cols=45 Identities=18% Similarity=0.202 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCccchHHHHHHHHHHhCCCeeecCC
Q 048725 279 HLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLM 324 (661)
Q Consensus 279 ~l~~~~~~L~~AkrPvIv~G~g~~~a~~~l~~lae~lg~PV~tt~~ 324 (661)
.++.+.+++ ..++...|+|.........+..+++..++|+++...
T Consensus 55 ~~~~~~~li-~~~~v~aiiG~~~s~~~~~v~~~~~~~~ip~i~~~~ 99 (334)
T cd06347 55 AANAATRLI-DQDKVVAIIGPVTSGATLAAGPIAEDAKVPMITPSA 99 (334)
T ss_pred HHHHHHHHh-cccCeEEEEcCCccHhHHHhHHHHHHCCCeEEcCCC
Confidence 344444444 445788889987777778888999999999998544
No 500
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=22.06 E-value=2.1e+02 Score=30.93 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=28.4
Q ss_pred HHHHHHHHHHh-CCCcEEEEcCCccchHHHHHHHHHHhCCCee
Q 048725 279 HLEQIVRLISE-SKKPVLYVGGGCLNSSEELRKFVELTGIPVA 320 (661)
Q Consensus 279 ~l~~~~~~L~~-AkrPvIv~G~g~~~a~~~l~~lae~lg~PV~ 320 (661)
.++++-+.+++ .+|++|+.|.+.. ..+.+.+..+..|+.+.
T Consensus 10 ~~~~l~~~l~~~~~r~livtd~~~~-~~~~v~~~L~~~g~~~~ 51 (374)
T cd08183 10 VAKELPALAAELGRRVLLVTGASSL-RAAWLIEALRAAGIEVT 51 (374)
T ss_pred HHHHHHHHHHHcCCcEEEEECCchH-HHHHHHHHHHHcCCeEE
Confidence 45555555554 5899999998766 56667777777777653
Done!