Query 048725
Match_columns 661
No_of_seqs 250 out of 1620
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 21:47:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048725.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048725hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ybh_A Acetolactate synthase, 100.0 1E-102 4E-107 892.4 58.4 584 77-660 1-584 (590)
2 1t9b_A Acetolactate synthase, 100.0 2.3E-98 8E-103 864.0 57.6 555 87-654 81-657 (677)
3 3eya_A Pyruvate dehydrogenase 100.0 1.4E-96 5E-101 835.0 52.7 530 87-640 2-535 (549)
4 2pgn_A Cyclohexane-1,2-dione h 100.0 4E-96 1E-100 837.5 54.1 552 86-652 2-564 (589)
5 4feg_A Pyruvate oxidase; carba 100.0 3.1E-95 1.1E-99 831.9 56.2 531 87-636 10-548 (603)
6 1ozh_A ALS, acetolactate synth 100.0 3.8E-95 1.3E-99 825.7 51.2 532 87-643 10-550 (566)
7 1v5e_A Pyruvate oxidase; oxido 100.0 3.3E-95 1.1E-99 829.7 46.3 541 86-649 2-574 (590)
8 2uz1_A Benzaldehyde lyase; thi 100.0 2.5E-94 8.4E-99 819.3 48.2 536 87-640 3-551 (563)
9 2pan_A Glyoxylate carboligase; 100.0 6.5E-94 2.2E-98 823.8 52.0 557 87-653 26-595 (616)
10 2iht_A Carboxyethylarginine sy 100.0 2.9E-93 9.9E-98 811.8 49.0 530 87-634 11-561 (573)
11 1q6z_A BFD, BFDC, benzoylforma 100.0 7E-92 2.4E-96 793.4 53.7 521 88-636 2-527 (528)
12 3lq1_A 2-succinyl-5-enolpyruvy 100.0 3.3E-92 1.1E-96 803.5 40.4 543 88-644 11-570 (578)
13 2c31_A Oxalyl-COA decarboxylas 100.0 2.1E-91 7.2E-96 796.0 43.4 529 86-638 8-551 (568)
14 2q28_A Oxalyl-COA decarboxylas 100.0 4.1E-91 1.4E-95 793.2 42.1 529 88-638 8-548 (564)
15 2x7j_A 2-succinyl-5-enolpyruvy 100.0 1.5E-91 5E-96 802.1 37.3 532 87-637 30-583 (604)
16 2wvg_A PDC, pyruvate decarboxy 100.0 4.9E-89 1.7E-93 776.5 41.9 522 87-639 2-546 (568)
17 2vbi_A Pyruvate decarboxylase; 100.0 8.6E-89 2.9E-93 774.2 41.3 520 87-639 2-538 (566)
18 3hww_A 2-succinyl-5-enolpyruvy 100.0 2.8E-89 9.5E-94 776.0 33.4 521 87-638 7-543 (556)
19 2vk8_A Pyruvate decarboxylase 100.0 5.1E-89 1.7E-93 775.9 34.5 521 87-638 3-546 (563)
20 1ovm_A Indole-3-pyruvate decar 100.0 5.4E-88 1.9E-92 765.9 41.7 517 85-637 2-535 (552)
21 2nxw_A Phenyl-3-pyruvate decar 100.0 5.6E-87 1.9E-91 758.4 43.7 513 87-637 20-545 (565)
22 2vbf_A Branched-chain alpha-ke 100.0 1.9E-85 6.5E-90 747.3 44.9 515 86-637 23-554 (570)
23 2c42_A Pyruvate-ferredoxin oxi 99.8 2.5E-21 8.6E-26 233.7 14.7 188 447-636 808-1072(1231)
24 3cf4_G Acetyl-COA decarboxylas 99.8 6.8E-20 2.3E-24 174.8 1.2 134 276-417 20-167 (170)
25 1ytl_A Acetyl-COA decarboxylas 99.7 4.6E-19 1.6E-23 168.2 -8.6 109 280-400 24-149 (174)
26 1w85_A Pyruvate dehydrogenase 99.6 2.7E-16 9.4E-21 167.4 10.6 119 499-636 139-269 (368)
27 2bfd_A 2-oxoisovalerate dehydr 99.6 4.3E-16 1.5E-20 167.7 9.9 116 500-634 160-287 (400)
28 1umd_A E1-alpha, 2-OXO acid de 99.6 4.6E-16 1.6E-20 166.2 9.9 118 501-637 143-272 (367)
29 1yd7_A 2-keto acid:ferredoxin 99.6 3.4E-16 1.1E-20 168.9 8.6 163 87-252 22-192 (395)
30 2o1x_A 1-deoxy-D-xylulose-5-ph 99.6 4.6E-16 1.6E-20 177.8 9.6 140 498-638 119-293 (629)
31 1qs0_A 2-oxoisovalerate dehydr 99.6 2.3E-15 7.9E-20 162.0 11.4 120 500-637 179-310 (407)
32 3l84_A Transketolase; TKT, str 99.6 8.5E-16 2.9E-20 174.2 6.8 119 501-638 113-246 (632)
33 2o1s_A 1-deoxy-D-xylulose-5-ph 99.6 9.5E-15 3.3E-19 166.8 15.3 139 500-639 119-289 (621)
34 3kom_A Transketolase; rossmann 99.6 1.5E-15 5.2E-20 173.2 8.4 120 500-638 114-253 (663)
35 3uk1_A Transketolase; structur 99.6 1.2E-15 4E-20 174.8 6.1 119 501-638 154-291 (711)
36 3mos_A Transketolase, TK; thia 99.6 3.9E-15 1.3E-19 169.1 10.1 119 500-638 119-246 (616)
37 3m49_A Transketolase; alpha-be 99.6 2.3E-15 7.8E-20 172.1 7.8 120 500-638 138-277 (690)
38 2ozl_A PDHE1-A type I, pyruvat 99.6 7E-15 2.4E-19 156.1 10.1 117 499-636 137-265 (365)
39 2e6k_A Transketolase; structur 99.5 7.4E-15 2.5E-19 168.1 10.2 119 500-637 116-253 (651)
40 1itz_A Transketolase; calvin c 99.5 1.1E-14 3.8E-19 167.2 11.5 120 500-638 125-265 (675)
41 2r8o_A Transketolase 1, TK 1; 99.5 4.2E-15 1.4E-19 170.6 7.4 121 499-638 111-251 (669)
42 1gpu_A Transketolase; transfer 99.5 7.1E-15 2.4E-19 168.9 7.3 119 500-637 114-253 (680)
43 1r9j_A Transketolase; domains, 99.5 1.1E-13 3.8E-18 158.7 10.6 119 500-637 114-253 (673)
44 3rim_A Transketolase, TK; TPP, 99.2 1.7E-11 5.9E-16 140.0 10.7 118 501-637 132-272 (700)
45 2yic_A 2-oxoglutarate decarbox 99.1 5.3E-11 1.8E-15 138.8 6.0 120 498-636 241-386 (868)
46 2xt6_A 2-oxoglutarate decarbox 99.0 3.7E-10 1.3E-14 135.0 6.4 119 499-636 487-631 (1113)
47 2jgd_A 2-oxoglutarate dehydrog 98.9 1.7E-09 5.9E-14 126.9 8.0 118 499-635 318-457 (933)
48 2qtc_A Pyruvate dehydrogenase 98.9 3.6E-09 1.2E-13 123.7 10.6 122 501-639 191-397 (886)
49 2c42_A Pyruvate-ferredoxin oxi 98.1 1.2E-05 4.2E-10 97.5 14.1 155 87-247 6-172 (1231)
50 3ahc_A Phosphoketolase, xylulo 97.8 2.5E-05 8.4E-10 90.0 8.2 118 502-636 175-322 (845)
51 1umd_B E1-beta, 2-OXO acid deh 95.5 0.12 4.2E-06 53.4 13.1 115 128-251 52-178 (324)
52 1qs0_B 2-oxoisovalerate dehydr 95.2 0.12 4E-06 54.0 11.8 116 128-251 53-179 (338)
53 1w85_B Pyruvate dehydrogenase 95.0 0.078 2.7E-06 54.9 9.9 116 128-251 51-177 (324)
54 3mos_A Transketolase, TK; thia 95.0 0.15 5.3E-06 57.5 12.9 148 92-248 321-473 (616)
55 2ozl_B PDHE1-B, pyruvate dehyd 94.8 0.065 2.2E-06 56.0 8.6 112 127-249 62-187 (341)
56 2o1x_A 1-deoxy-D-xylulose-5-ph 94.3 0.22 7.6E-06 56.4 12.1 149 87-248 321-481 (629)
57 2o1s_A 1-deoxy-D-xylulose-5-ph 94.2 0.25 8.7E-06 55.8 12.2 151 87-249 318-480 (621)
58 2e6k_A Transketolase; structur 94.2 0.15 5E-06 58.1 10.2 114 128-248 398-516 (651)
59 2bfd_B 2-oxoisovalerate dehydr 94.1 0.11 3.7E-06 54.3 8.4 116 128-251 68-195 (342)
60 2r8o_A Transketolase 1, TK 1; 94.1 0.13 4.5E-06 58.6 9.7 115 128-248 403-521 (669)
61 3glr_A NAD-dependent deacetyla 93.9 0.14 4.8E-06 51.8 8.4 70 349-418 192-264 (285)
62 1ik6_A Pyruvate dehydrogenase; 93.8 0.14 4.8E-06 54.0 8.6 115 128-251 99-225 (369)
63 1s5p_A NAD-dependent deacetyla 93.8 0.064 2.2E-06 52.9 5.5 70 346-417 159-230 (235)
64 3kom_A Transketolase; rossmann 93.7 0.25 8.5E-06 56.2 11.0 113 128-247 404-521 (663)
65 1pno_A NAD(P) transhydrogenase 93.4 0.44 1.5E-05 43.4 9.7 129 279-417 12-179 (180)
66 1j8f_A SIRT2, sirtuin 2, isofo 93.3 0.13 4.3E-06 53.2 7.0 71 348-418 214-303 (323)
67 2fsv_C NAD(P) transhydrogenase 93.1 0.4 1.4E-05 44.6 9.1 129 279-417 35-202 (203)
68 1q1a_A HST2 protein; ternary c 93.1 0.13 4.5E-06 52.3 6.6 68 351-418 208-278 (289)
69 1djl_A Transhydrogenase DIII; 92.8 0.42 1.4E-05 44.7 8.8 130 280-419 35-203 (207)
70 1r9j_A Transketolase; domains, 92.8 0.31 1E-05 55.6 9.8 114 128-248 403-521 (673)
71 3l84_A Transketolase; TKT, str 92.7 0.37 1.3E-05 54.4 10.3 111 130-248 386-500 (632)
72 1gpu_A Transketolase; transfer 92.7 0.29 9.8E-06 56.0 9.5 111 131-248 414-529 (680)
73 1ozh_A ALS, acetolactate synth 92.7 1.4 4.7E-05 49.1 14.9 117 492-633 48-170 (566)
74 2bru_C NAD(P) transhydrogenase 92.5 0.85 2.9E-05 41.7 10.2 129 278-416 18-185 (186)
75 1itz_A Transketolase; calvin c 92.4 0.3 1E-05 55.8 9.2 114 128-248 415-534 (675)
76 1yc5_A NAD-dependent deacetyla 92.4 0.13 4.5E-06 51.0 5.4 69 347-417 173-243 (246)
77 1d4o_A NADP(H) transhydrogenas 92.2 0.48 1.7E-05 43.3 8.2 131 279-419 11-180 (184)
78 1m2k_A Silent information regu 92.2 0.18 6.1E-06 50.1 6.1 68 348-417 171-240 (249)
79 1ybh_A Acetolactate synthase, 91.8 0.68 2.3E-05 51.9 11.1 106 507-634 62-173 (590)
80 2pan_A Glyoxylate carboligase; 91.8 0.83 2.9E-05 51.5 11.9 118 493-634 66-189 (616)
81 1ma3_A SIR2-AF2, transcription 91.7 0.18 6.3E-06 50.2 5.6 69 347-417 176-246 (253)
82 2iht_A Carboxyethylarginine sy 91.6 0.73 2.5E-05 51.5 11.1 118 493-634 49-172 (573)
83 3k35_A NAD-dependent deacetyla 91.5 0.33 1.1E-05 49.8 7.2 70 347-418 199-270 (318)
84 1q14_A HST2 protein; histone d 91.5 0.38 1.3E-05 50.3 7.9 68 351-418 216-286 (361)
85 1t9b_A Acetolactate synthase, 91.4 2.4 8.4E-05 48.2 15.3 116 493-633 121-242 (677)
86 2hjh_A NAD-dependent histone d 91.4 0.32 1.1E-05 50.9 7.3 69 348-419 249-318 (354)
87 3pki_A NAD-dependent deacetyla 91.2 0.33 1.1E-05 50.3 6.9 70 347-418 199-270 (355)
88 2uz1_A Benzaldehyde lyase; thi 91.2 0.89 3E-05 50.6 11.2 116 493-633 42-164 (563)
89 3riy_A NAD-dependent deacetyla 91.1 0.24 8.4E-06 49.8 5.8 66 347-414 205-272 (273)
90 3hww_A 2-succinyl-5-enolpyruvy 90.1 0.4 1.4E-05 53.4 7.1 104 139-248 422-538 (556)
91 3uk1_A Transketolase; structur 90.1 1.2 4.1E-05 50.9 10.9 114 128-248 449-566 (711)
92 3eya_A Pyruvate dehydrogenase 89.9 2.1 7.3E-05 47.4 12.8 116 127-248 397-528 (549)
93 2wvg_A PDC, pyruvate decarboxy 89.5 1.5 5.2E-05 48.8 11.2 125 493-635 42-171 (568)
94 4iao_A NAD-dependent histone d 89.4 0.65 2.2E-05 50.1 7.5 68 348-418 387-455 (492)
95 2q28_A Oxalyl-COA decarboxylas 89.1 1.1 3.7E-05 49.9 9.6 119 492-633 45-169 (564)
96 2vbi_A Pyruvate decarboxylase; 89.0 1.3 4.4E-05 49.4 10.1 124 493-635 42-171 (566)
97 2x7j_A 2-succinyl-5-enolpyruvy 89.0 0.83 2.9E-05 51.4 8.6 117 493-634 70-199 (604)
98 1v5e_A Pyruvate oxidase; oxido 89.0 1.7 5.7E-05 48.8 11.0 116 493-634 44-165 (590)
99 3m49_A Transketolase; alpha-be 88.9 1 3.5E-05 51.4 9.2 113 130-248 431-546 (690)
100 2c31_A Oxalyl-COA decarboxylas 88.9 1.2 4.2E-05 49.5 9.9 105 137-248 430-546 (568)
101 1o97_D Electron transferring f 88.8 0.56 1.9E-05 48.3 6.4 112 293-418 203-319 (320)
102 1w85_A Pyruvate dehydrogenase 87.8 1.8 6.2E-05 45.4 9.6 113 135-248 144-266 (368)
103 1q6z_A BFD, BFDC, benzoylforma 87.6 0.94 3.2E-05 50.0 7.8 120 492-635 38-163 (528)
104 4feg_A Pyruvate oxidase; carba 87.6 1.1 3.8E-05 50.3 8.4 118 492-634 50-172 (603)
105 1efv_A Electron transfer flavo 87.3 1.1 3.7E-05 46.1 7.4 110 294-418 199-313 (315)
106 2vk8_A Pyruvate decarboxylase 87.3 2.3 7.9E-05 47.2 10.7 124 493-634 43-171 (563)
107 3rim_A Transketolase, TK; TPP, 87.1 3.2 0.00011 47.3 11.8 157 86-248 373-553 (700)
108 1ovm_A Indole-3-pyruvate decar 87.0 2.1 7.3E-05 47.3 10.3 124 493-634 44-171 (552)
109 2nxw_A Phenyl-3-pyruvate decar 87.0 1.9 6.4E-05 48.0 9.8 111 507-634 71-187 (565)
110 2pgn_A Cyclohexane-1,2-dione h 86.7 2.4 8.1E-05 47.5 10.4 106 507-634 55-166 (589)
111 3lq1_A 2-succinyl-5-enolpyruvy 85.0 1.3 4.6E-05 49.4 7.3 117 492-633 49-178 (578)
112 1ik6_A Pyruvate dehydrogenase; 84.5 3.2 0.00011 43.5 9.5 111 492-629 97-218 (369)
113 3u31_A SIR2A, transcriptional 84.4 0.67 2.3E-05 47.0 4.0 64 347-411 209-274 (290)
114 1qs0_A 2-oxoisovalerate dehydr 84.0 1.2 4.1E-05 47.4 5.9 108 138-248 186-306 (407)
115 1yd7_A 2-keto acid:ferredoxin 83.3 1.1 3.9E-05 47.4 5.5 105 506-630 75-185 (395)
116 2vbf_A Branched-chain alpha-ke 83.2 2.9 9.9E-05 46.5 9.0 123 493-634 64-191 (570)
117 2ozl_A PDHE1-A type I, pyruvat 83.0 1.7 5.9E-05 45.5 6.6 107 138-248 145-262 (365)
118 1efp_A ETF, protein (electron 82.8 1.9 6.4E-05 44.1 6.6 109 293-416 193-306 (307)
119 2ozl_B PDHE1-B, pyruvate dehyd 81.8 3.2 0.00011 43.0 8.1 113 492-630 61-183 (341)
120 3c2q_A Uncharacterized conserv 81.2 2.1 7.3E-05 43.2 6.1 103 309-418 231-339 (345)
121 1qs0_B 2-oxoisovalerate dehydr 78.5 4.1 0.00014 42.0 7.7 113 492-630 51-173 (338)
122 2bfd_A 2-oxoisovalerate dehydr 74.9 6.5 0.00022 41.6 8.0 107 138-247 167-285 (400)
123 1umd_A E1-alpha, 2-OXO acid de 74.3 8.1 0.00028 40.3 8.6 107 138-248 149-268 (367)
124 3i9v_3 NADH-quinone oxidoreduc 74.3 6.3 0.00022 45.6 8.4 79 275-365 321-402 (783)
125 2iv2_X Formate dehydrogenase H 73.3 5 0.00017 45.9 7.2 119 275-394 79-210 (715)
126 2bfd_B 2-oxoisovalerate dehydr 63.2 13 0.00046 38.2 7.3 112 492-629 66-188 (342)
127 1umd_B E1-beta, 2-OXO acid deh 62.3 15 0.00051 37.5 7.4 111 492-629 50-171 (324)
128 1w85_B Pyruvate dehydrogenase 62.1 12 0.00041 38.2 6.6 111 492-629 49-170 (324)
129 3l49_A ABC sugar (ribose) tran 47.2 1.8E+02 0.0062 27.8 12.5 89 88-176 108-216 (291)
130 2q5c_A NTRC family transcripti 47.0 72 0.0025 29.7 8.9 103 504-621 79-182 (196)
131 2yic_A 2-oxoglutarate decarbox 45.6 89 0.003 36.4 11.0 120 127-252 584-716 (868)
132 3trj_A Phosphoheptose isomeras 45.3 81 0.0028 29.3 9.0 101 89-189 34-153 (201)
133 2nap_A Protein (periplasmic ni 44.5 34 0.0012 38.9 7.3 117 275-394 80-212 (723)
134 3lou_A Formyltetrahydrofolate 44.2 29 0.00099 34.9 5.9 73 519-627 95-174 (292)
135 2ivf_A Ethylbenzene dehydrogen 42.9 8.8 0.0003 45.6 2.0 117 275-394 162-290 (976)
136 1hqk_A 6,7-dimethyl-8-ribityll 42.9 21 0.00071 32.3 4.0 69 80-148 20-103 (154)
137 2xt6_A 2-oxoglutarate decarbox 42.8 95 0.0032 37.2 10.8 119 127-251 829-960 (1113)
138 3fxa_A SIS domain protein; str 42.4 39 0.0013 31.3 6.3 46 276-321 30-76 (201)
139 1h0h_A Formate dehydrogenase ( 42.0 46 0.0016 39.4 8.1 117 275-394 87-228 (977)
140 1tk9_A Phosphoheptose isomeras 41.1 84 0.0029 28.4 8.3 96 90-187 31-147 (188)
141 4fyk_A Deoxyribonucleoside 5'- 39.6 65 0.0022 28.9 6.8 67 89-158 19-102 (152)
142 3n0v_A Formyltetrahydrofolate 39.5 29 0.00098 34.8 4.9 36 519-557 90-128 (286)
143 3o1l_A Formyltetrahydrofolate 39.1 30 0.001 34.9 5.0 74 519-628 105-185 (302)
144 2l69_A Rossmann 2X3 fold prote 38.9 48 0.0016 26.8 5.1 45 591-635 17-61 (134)
145 1hi9_A Dciaa, dipeptide transp 38.2 5.2 0.00018 39.8 -0.8 155 90-248 38-224 (274)
146 4ds3_A Phosphoribosylglycinami 38.2 24 0.00081 33.7 3.9 74 520-628 8-90 (209)
147 2pju_A Propionate catabolism o 38.0 80 0.0027 30.3 7.7 103 504-621 91-193 (225)
148 2jgd_A 2-oxoglutarate dehydrog 37.1 2E+02 0.0067 33.8 12.1 119 127-251 652-783 (933)
149 2m1z_A LMO0427 protein; homolo 36.8 65 0.0022 27.0 5.9 90 297-418 11-104 (106)
150 3tqr_A Phosphoribosylglycinami 36.8 46 0.0016 31.7 5.7 74 521-628 7-87 (215)
151 2f62_A Nucleoside 2-deoxyribos 36.5 72 0.0025 28.8 6.7 74 83-158 21-106 (161)
152 2vpz_A Thiosulfate reductase; 35.6 76 0.0026 36.3 8.4 114 275-394 116-244 (765)
153 3ahc_A Phosphoketolase, xylulo 35.3 2.2E+02 0.0074 32.9 11.8 113 128-245 492-622 (845)
154 1rvv_A Riboflavin synthase; tr 34.7 20 0.00069 32.4 2.6 69 80-148 20-103 (154)
155 3rot_A ABC sugar transporter, 34.5 2.5E+02 0.0085 27.0 11.2 88 87-175 112-212 (297)
156 1u7z_A Coenzyme A biosynthesis 32.9 80 0.0027 30.3 6.7 80 467-558 7-96 (226)
157 2qtc_A Pyruvate dehydrogenase 32.5 2.2E+02 0.0074 33.2 11.4 113 130-248 566-692 (886)
158 2xbl_A Phosphoheptose isomeras 31.5 1.5E+02 0.0052 26.9 8.4 99 90-188 37-154 (198)
159 2b99_A Riboflavin synthase; lu 31.4 1E+02 0.0035 27.7 6.7 42 79-123 9-54 (156)
160 1di0_A Lumazine synthase; tran 31.0 26 0.0009 31.7 2.7 70 79-148 17-101 (158)
161 1kqf_A FDH-N alpha, formate de 30.4 1.2E+02 0.0041 35.9 9.1 117 275-394 125-267 (1015)
162 2l69_A Rossmann 2X3 fold prote 29.8 57 0.0019 26.4 4.1 30 592-621 93-122 (134)
163 2yva_A DNAA initiator-associat 29.3 1.9E+02 0.0065 26.2 8.7 98 90-188 30-147 (196)
164 3fro_A GLGA glycogen synthase; 29.2 4.5E+02 0.015 26.4 13.3 123 276-418 266-394 (439)
165 1meo_A Phosophoribosylglycinam 28.0 1E+02 0.0034 29.2 6.4 75 521-629 2-84 (209)
166 2kyr_A Fructose-like phosphotr 28.0 1.1E+02 0.0038 25.8 6.0 81 304-416 24-105 (111)
167 1jkx_A GART;, phosphoribosylgl 27.9 68 0.0023 30.4 5.2 74 521-628 2-83 (212)
168 3ksm_A ABC-type sugar transpor 27.6 3.8E+02 0.013 25.0 11.6 88 87-174 107-210 (276)
169 3nbm_A PTS system, lactose-spe 27.4 79 0.0027 26.5 5.0 31 291-321 7-39 (108)
170 1c2y_A Protein (lumazine synth 27.1 26 0.00089 31.7 1.9 70 79-148 20-103 (156)
171 2obx_A DMRL synthase 1, 6,7-di 27.0 46 0.0016 30.1 3.6 69 80-148 19-102 (157)
172 1x92_A APC5045, phosphoheptose 26.9 1.3E+02 0.0043 27.6 6.9 97 90-188 34-151 (199)
173 2hy5_A Putative sulfurtransfer 26.6 80 0.0027 27.1 5.1 84 279-363 20-130 (130)
174 2e7z_A Acetylene hydratase AHY 26.2 17 0.00059 41.4 0.8 112 275-394 79-205 (727)
175 1ejb_A Lumazine synthase; anal 26.0 48 0.0016 30.3 3.5 45 79-123 23-72 (168)
176 3da8_A Probable 5'-phosphoribo 25.9 64 0.0022 30.7 4.6 37 594-630 54-95 (215)
177 4au1_A Precorrin-8X methylmuta 24.9 91 0.0031 29.9 5.4 52 276-327 157-212 (229)
178 3s99_A Basic membrane lipoprot 24.7 2.1E+02 0.0073 29.2 8.8 85 92-176 76-176 (356)
179 1vim_A Hypothetical protein AF 24.5 1.6E+02 0.0054 27.1 7.1 45 276-321 33-78 (200)
180 3dma_A Exopolyphosphatase-rela 24.2 2.3E+02 0.0079 28.8 8.9 112 276-390 7-128 (343)
181 1e2b_A Enzyme IIB-cellobiose; 24.0 59 0.002 27.1 3.5 31 291-321 4-36 (106)
182 2gk4_A Conserved hypothetical 24.0 1.4E+02 0.0048 28.7 6.7 78 469-558 4-93 (232)
183 3av3_A Phosphoribosylglycinami 23.8 77 0.0026 30.0 4.8 37 592-628 45-86 (212)
184 3etn_A Putative phosphosugar i 23.7 1.2E+02 0.0042 28.4 6.3 46 276-321 40-90 (220)
185 2xhz_A KDSD, YRBH, arabinose 5 23.5 76 0.0026 28.6 4.6 45 276-321 35-80 (183)
186 2f9f_A First mannosyl transfer 23.4 2.4E+02 0.0084 24.7 8.1 123 280-421 38-164 (177)
187 4gnr_A ABC transporter substra 22.8 1.7E+02 0.0057 29.1 7.5 58 277-334 60-117 (353)
188 3p9x_A Phosphoribosylglycinami 22.4 87 0.003 29.7 4.8 34 521-557 4-40 (211)
189 3sho_A Transcriptional regulat 21.9 2.3E+02 0.008 25.3 7.7 92 91-188 29-125 (187)
190 1jeo_A MJ1247, hypothetical pr 21.9 1.5E+02 0.0051 26.5 6.3 46 276-322 26-72 (180)
191 1kz1_A 6,7-dimethyl-8-ribityll 21.7 53 0.0018 29.8 2.9 70 79-148 24-109 (159)
192 1m3s_A Hypothetical protein YC 21.7 2E+02 0.0067 25.8 7.1 45 276-321 23-68 (186)
193 2bfw_A GLGA glycogen synthase; 21.7 2.3E+02 0.0079 25.2 7.7 122 277-418 52-179 (200)
194 3l6u_A ABC-type sugar transpor 21.6 4.8E+02 0.016 24.6 10.5 89 88-176 113-220 (293)
195 3sho_A Transcriptional regulat 21.5 92 0.0031 28.1 4.7 45 276-321 25-70 (187)
196 3nrb_A Formyltetrahydrofolate 20.8 34 0.0012 34.3 1.6 35 520-557 89-126 (287)
197 1f0k_A MURG, UDP-N-acetylgluco 20.8 1.9E+02 0.0066 28.7 7.5 81 88-184 196-281 (364)
198 1p9o_A Phosphopantothenoylcyst 20.4 71 0.0024 32.3 3.9 56 467-533 35-92 (313)
199 2ywr_A Phosphoribosylglycinami 20.1 1.1E+02 0.0038 29.0 5.0 36 593-628 44-84 (216)
No 1
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=100.00 E-value=1e-102 Score=892.41 Aligned_cols=584 Identities=86% Similarity=1.355 Sum_probs=510.0
Q ss_pred cccccCCCCCCCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEE
Q 048725 77 NFSSRFAPDQPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICI 156 (661)
Q Consensus 77 ~~~~~~~~~~~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~ 156 (661)
.|+|||.+++.++++++|++.|+++||++|||+||+++++|+++|.++++|++|.++||++|+|||+||||+||||+||+
T Consensus 1 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~ 80 (590)
T 1ybh_A 1 TFISRFAPDQPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFAAEGYARSSGKPGICI 80 (590)
T ss_dssp CCCCSSCTTCCEEHHHHHHHHHHTTTCCEEEECCCGGGHHHHHHHHHCSSCEECCCSSHHHHHHHHHHHHHHHSSCEEEE
T ss_pred CchhcccccCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhccCCccEEeeCCHHHHHHHHHHHHHHHCCCEEEE
Confidence 38899999988999999999999999999999999999999999998777999999999999999999999999999999
Q ss_pred EccchhhHHHHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcC
Q 048725 157 ATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSG 236 (661)
Q Consensus 157 ~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~ 236 (661)
+|+|||++|+++||++|+.+++|||+||||+|...++++++|++||.+++++++||++++.+++++++++++||+.|+++
T Consensus 81 ~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~g~~~~Q~~d~~~~~~~~~k~~~~v~~~~~i~~~l~~A~~~a~~~ 160 (590)
T 1ybh_A 81 ATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSG 160 (590)
T ss_dssp ECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGTTTTCTTCCCHHHHHGGGSSEEEECCCGGGHHHHHHHHHHHHHSS
T ss_pred eccCchHHHHHHHHHHHHhhCCCEEEEeCcCCccccCCCcccccCHHHHHHHHhCeEEecCCHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCccchHHHHHHHHHHhC
Q 048725 237 RPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTG 316 (661)
Q Consensus 237 ~~GPV~I~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~~a~~~l~~lae~lg 316 (661)
|+|||||+||.|++.++....++.......+.......++.+.+++++++|.+||||+|++|+++....+++.+|||++|
T Consensus 161 ~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~~~l~~lae~~~ 240 (590)
T 1ybh_A 161 RPGPVLVDVPKDIQQQLAIPNWEQAMRLPGYMSRMPKPPEDSHLEQIVRLISESKKPVLYVGGGCLNSSDELGRFVELTG 240 (590)
T ss_dssp SCCEEEEEEEHHHHHCEECCCTTCCCCCHHHHHHSCCCCCHHHHHHHHHHHHHCSSEEEEECGGGTTCHHHHHHHHHHHC
T ss_pred CCceEEEEeCcchhhhhcccccccccccccCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEECcccccCHHHHHHHHHHhC
Confidence 99999999999998765422211111111110111112467889999999999999999999998755599999999999
Q ss_pred CCeeecCCCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCC
Q 048725 317 IPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNK 396 (661)
Q Consensus 317 ~PV~tt~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~ 396 (661)
+||++|++|||.||++||+++|++|..++..+++++++||+||+||++++++.++.+..|.++.++||||+|+.++++++
T Consensus 241 ~Pv~~t~~g~g~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~ 320 (590)
T 1ybh_A 241 IPVASTLMGLGSYPADDELSLHMLGMHGTVYANYAVEHSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNK 320 (590)
T ss_dssp CCEEECTTTTTSSCTTSTTEEEECSTTSCHHHHHHHHHCSEEEEESCCCCHHHHSSGGGTTTTSEEEEEESCTTTTTSSS
T ss_pred CCEEEchhhcCcCCCCCchhcCCcccccCHHHHHHHHhCCEEEEEcCCCCccccCcccccCCCCeEEEEECCHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999998887887777877889999999999999999
Q ss_pred CCcceEeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEEEEcC
Q 048725 397 QPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGV 476 (661)
Q Consensus 397 ~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~ 476 (661)
.+++.+.+|++.+|++|.+.+.............|.+++.+.+.............+++..+++.|.+.++++.++++|+
T Consensus 321 ~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~lp~~~ivv~d~ 400 (590)
T 1ybh_A 321 TPHVSVCGDVKLALQGMNKVLENRAEELKLDFGVWRNELNVQKQKFPLSFKTFGEAIPPQYAIKVLDELTDGKAIISTGV 400 (590)
T ss_dssp CCSEEEESCHHHHHHHHHHHHHHTHHHHCCCCHHHHHHHHHHHHHSCCCCCCCTTBCCHHHHHHHHHHHTTTCCEEEECS
T ss_pred CCCeEEecCHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhhhhhcccccCCcCHHHHHHHHHHhCCCCCEEEEcC
Confidence 99999999999999999887753210000124568777766655443222222345899999999999999999999999
Q ss_pred ChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeC
Q 048725 477 GQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNN 556 (661)
Q Consensus 477 G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN 556 (661)
|++.+|..++++..++++|++++++|+||+++|+|+|+++|+|+++||+++|||+|+|+++||+|++++++|+++||+||
T Consensus 401 G~~~~~~~~~~~~~~~~~~~~~g~~G~~G~~l~~AiGaala~~~~~vv~i~GDGs~~~~~~~L~ta~~~~l~~~ivv~NN 480 (590)
T 1ybh_A 401 GQHQMWAAQFYNYKKPRQWLSSGGLGAMGFGLPAAIGASVANPDAIVVDIDGDGSFIMNVQELATIRVENLPVKVLLLNN 480 (590)
T ss_dssp SHHHHHHHHSCCCSSTTSEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHTTTHHHHHHHTTCCEEEEEEEC
T ss_pred cHHHHHHHHhcccCCCCeEEeCCCcccccchHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCcEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCC
Q 048725 557 QHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQE 636 (661)
Q Consensus 557 ~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~ 636 (661)
++|+|++++|...|+.....+.++.|.......+||.++|++||+++++|++.+||+++|+++++.+||+||||++++.+
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~gp~liev~~~~~~ 560 (590)
T 1ybh_A 481 QHLGMVMQWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVTKKADLREAIQTMLDTPGPYLLDVICPHQE 560 (590)
T ss_dssp SBCHHHHHHHHHHSTTCCCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEECBHHHHHHHHHHHHHSSSCEEEEEECCTTC
T ss_pred CcchHHHHHHHHhcCCccccccccccccccCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEecCCc
Confidence 99999998887776543323333333210011379999999999999999999999999999999999999999999999
Q ss_pred CcCCcCCCCCccccccccCCCCCC
Q 048725 637 HVLPMIPSGGAFKDVITEGDGRTQ 660 (661)
Q Consensus 637 ~~~p~~~~~~~~~~~~~~~~~~~~ 660 (661)
.+.|+++.+..+.++..++|||-.
T Consensus 561 ~~~p~~~~~~~~~~~~~~~~~~~~ 584 (590)
T 1ybh_A 561 HVLPMIPSGGTFNDVITEGDGRLE 584 (590)
T ss_dssp CCCSBCCTTCCGGGCBCSCCCC--
T ss_pred ccCCcCCCCCchHhhccCCccccc
Confidence 888999888888899999999954
No 2
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=100.00 E-value=2.3e-98 Score=864.03 Aligned_cols=555 Identities=44% Similarity=0.743 Sum_probs=484.3
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNL 166 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~ 166 (661)
.++++++|++.|+++||++|||+||+++++|+++|.++++|++|.++||++|+|||+||||+||||+||++|+|||++|+
T Consensus 81 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~pl~dal~~~~~i~~v~~~hE~~Aa~aAdGyAr~tGkpgvv~~TsGpG~~N~ 160 (677)
T 1t9b_A 81 GLTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATNV 160 (677)
T ss_dssp TCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHTTTCSSSEEECCSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTT
T ss_pred CCCHHHHHHHHHHHcCCCEEEEecCccHHHHHHHHHhCCCCeEEEeCChHHHHHHHHHHHHHHCCCEEEEECCChHHHHH
Confidence 37999999999999999999999999999999999887779999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEec
Q 048725 167 VSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVP 246 (661)
Q Consensus 167 l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP 246 (661)
++||++|+.+++|||+||||++...++++++|++||.+++++++||++++.+++++++.+++||+.|+++|+|||||+||
T Consensus 161 ~~gia~A~~d~vPllvItG~~~~~~~g~~a~Q~~Dq~~i~~~~tk~~~~v~~~~~i~~~i~~A~~~A~~grpGPV~l~lP 240 (677)
T 1t9b_A 161 VTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDLP 240 (677)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCTTTTTSCCTTCCCHHHHTGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEeCCCChhhcCCCCccccCHHHHhhhheeEEEEcCCHHHHHHHHHHHHHHHhhCCCceEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCCCCCCCCCCCCCC-CCC----CCCCHHHHHHHHHHHHhCCCcEEEEcCCcc---chHHHHHHHHHHhCCC
Q 048725 247 KDIQQQLAVPNWNQPIKLPGYMS-RLP----KEPSEVHLEQIVRLISESKKPVLYVGGGCL---NSSEELRKFVELTGIP 318 (661)
Q Consensus 247 ~dv~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~---~a~~~l~~lae~lg~P 318 (661)
.|++.+.+..........+.... ... ..+..+.+++++++|.+||||+|++|+|+. .+.+++++|||++|+|
T Consensus 241 ~Dv~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~AkrPvIl~G~g~~~~~~~~~~l~~lae~~~~P 320 (677)
T 1t9b_A 241 KDVTAAILRNPIPTKTTLPSNALNQLTSRAQDEFVMQSINKAADLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIP 320 (677)
T ss_dssp HHHHHSBCCSCBC--------------------CHHHHHHHHHHHHHTCSSEEEEECGGGGGSTTHHHHHHHHHHHTTCC
T ss_pred HHHhhhhcccccccccccccccccCCCccccccCCHHHHHHHHHHHHhCCCeEEEECcccccCchhHHHHHHHHHHhCCC
Confidence 99987654211100000110000 000 012356799999999999999999999985 2568899999999999
Q ss_pred eeecCCCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCe---------EEEEcCCc
Q 048725 319 VASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAK---------IVHIDIDS 389 (661)
Q Consensus 319 V~tt~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~---------vi~Id~d~ 389 (661)
|++|++|||.||++||+++|++|.++...+++++++||+||+||++++++.++.+..|.++.+ +||||+|+
T Consensus 321 V~tt~~gkg~~~~~hpl~lG~~G~~g~~~~~~~l~~aDlvl~iG~r~~~~~t~~~~~~~~~~~~~~~~~~~~iI~idid~ 400 (677)
T 1t9b_A 321 VTTTLQGLGSFDQEDPKSLDMLGMHGCATANLAVQNADLIIAVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSP 400 (677)
T ss_dssp EEECGGGTTSSCTTSTTEEEECSTTSCHHHHHHHHHCSEEEEESCCCCTTTSCSGGGSSHHHHHHHHTTSCEEEEEESCG
T ss_pred eeeccccCccCCCCCccccCcCCccCcHHHHHHHhcCCEEEEECCccCcccccCccccCcccccccccCCceEEEEECCH
Confidence 999999999999999999999999999999999999999999999999988887777765556 99999999
Q ss_pred hhhccCCCCcceEeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCcC--CCCCCCChHHHHHHHhhhc-
Q 048725 390 AEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFK--TFEESIPPQYAIQVLDELT- 466 (661)
Q Consensus 390 ~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~--~~~~~i~~~~~~~~l~~~l- 466 (661)
.++++++..++.+.+|++.+|++|++.+... .....|.+.+.+.++.++..+. .....++++.+++.|.+.+
T Consensus 401 ~~~~~~~~~~~~i~gD~~~~l~~L~~~l~~~-----~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~l~ 475 (677)
T 1t9b_A 401 KNINKVVQTQIAVEGDATTNLGKMMSKIFPV-----KERSEWFAQINKWKKEYPYAYMEETPGSKIKPQTVIKKLSKVAN 475 (677)
T ss_dssp GGSSSSSCCSEEEESCHHHHHHHHHTTSCCC-----CCCHHHHHHHHHHHHHSCCCCCCCCTTCCBCHHHHHHHHHHHHH
T ss_pred HHhCCcccCCEEEeCCHHHHHHHHHHHhhcc-----ccchHHHHHHHHHHHhcccccccccCCCCcCHHHHHHHHHHHhh
Confidence 9999999999999999999999998877531 1245687777766655432211 1234588999999999988
Q ss_pred --CCCcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHH
Q 048725 467 --NGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKV 544 (661)
Q Consensus 467 --~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~ 544 (661)
+++.|+++|+|++.+|..++++...+++|++++++|+||+++|+|+|+++|+|+++||+++|||+|+|+++||+|+++
T Consensus 476 ~~~~~~iv~~~vg~~~~~~~~~~~~~~p~~~~~sg~~G~mG~~lpaAiGaalA~p~~~Vv~i~GDGsf~~~~~eL~ta~~ 555 (677)
T 1t9b_A 476 DTGRHVIVTTGVGQHQMWAAQHWTWRNPHTFITSGGLGTMGYGLPAAIGAQVAKPESLVIDIDGDASFNMTLTELSSAVQ 555 (677)
T ss_dssp TTCSCEEEEECSSHHHHHHHHHSCCCSTTCEECCCSSCCTTCHHHHHHHHHHHCTTSEEEEEEEHHHHHHHGGGHHHHHH
T ss_pred cCCCCEEEEeCCchHHHHHHHhcccCCCCeEEeCCCcchhhchHHHHHHHHHhCCCCeEEEEEeehHHhccHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCC
Q 048725 545 EKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPG 624 (661)
Q Consensus 545 ~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~g 624 (661)
+++|+++||+||++|+|++++|...|........+ ..+||.++|++||+++++|++.+||+++|+++++.+|
T Consensus 556 ~~l~v~ivV~NN~~~g~~~~~~~~~~~~~~~~~~~--------~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~g 627 (677)
T 1t9b_A 556 AGTPVKILILNNEEQGMVTQWQSLFYEHRYSHTHQ--------LNPDFIKLAEAMGLKGLRVKKQEELDAKLKEFVSTKG 627 (677)
T ss_dssp HTCCCEEEEEECSSCHHHHHHHHHHSTTCCCSCCC--------CCCCHHHHHHHTTCEEEEECSHHHHHHHHHHHHHCSS
T ss_pred hCCCeEEEEEeCCCchhhhhhhhhhcCCCcccCcC--------CCCCHHHHHHHcCCeEEEECCHHHHHHHHHHHHHCCC
Confidence 99999999999999999999887766432111111 1279999999999999999999999999999999999
Q ss_pred cEEEEEEeCCCCCcCCcCCCCCcccccccc
Q 048725 625 PYLLDVIFPHQEHVLPMIPSGGAFKDVITE 654 (661)
Q Consensus 625 p~lIeV~~~~~~~~~p~~~~~~~~~~~~~~ 654 (661)
|+||||++++.++++|+++.+..+.+++..
T Consensus 628 p~lIev~~~~~~~~~p~~~~~~~~~~~~~~ 657 (677)
T 1t9b_A 628 PVLLEVEVDKKVPVLPMVAGGSGLDEFINF 657 (677)
T ss_dssp CEEEEEEBCSSCCCSSBCCTTCCTTSCBCC
T ss_pred cEEEEEEecCCcccCCcCCCCCchhhhhcC
Confidence 999999999999888998877777766543
No 3
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=100.00 E-value=1.4e-96 Score=835.01 Aligned_cols=530 Identities=28% Similarity=0.430 Sum_probs=457.0
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNL 166 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~ 166 (661)
.++++|+|++.|+++||++|||+||+++++|+++|.++++|++|.++||++|+|||+||||+||||+||++|+|||++|+
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~dal~~~~~i~~i~~~~E~~Aa~~A~GyAr~tg~~~v~~~TsGpG~~N~ 81 (549)
T 3eya_A 2 KQTVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHL 81 (549)
T ss_dssp CCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHHCSSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTT
T ss_pred CccHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHHhcCCCeEEEeCChHHHHHHHHHHHHHhCCCEEEEeCCCCcHhhh
Confidence 47899999999999999999999999999999999987779999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEec
Q 048725 167 VSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVP 246 (661)
Q Consensus 167 l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP 246 (661)
++||++||.+++|||+||||+|...++++++|++||.+++++++||++++.+++++++.+++||+.|.++ +|||||+||
T Consensus 82 ~~gi~~A~~~~vPvl~itg~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~-~GPV~l~iP 160 (549)
T 3eya_A 82 INGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLN-RGVSVVVLP 160 (549)
T ss_dssp HHHHHHHHHTTCCEEEEEEESCGGGTTSCCTTCCCHHHHTSTTCSEEEECCSGGGHHHHHHHHHHHHHHT-TSEEEEEEE
T ss_pred HHHHHHHHhhCCCEEEEeCCCchhhcCCCCCCccCHHHHHhhhhheEEEeCCHHHHHHHHHHHHHHHhhC-CCCEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999996 599999999
Q ss_pred cchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCccchHHHHHHHHHHhCCCeeecCCCC
Q 048725 247 KDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGL 326 (661)
Q Consensus 247 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~~a~~~l~~lae~lg~PV~tt~~gk 326 (661)
.|++.++....... ..... ......++++.+++++++|.+||||+|++|+|+.++.+++++|+|++|+||++|++||
T Consensus 161 ~dv~~~~~~~~~~~-~~~~~--~~~~~~~~~~~i~~~~~~l~~A~rpvIl~G~g~~~a~~~l~~lae~~~~Pv~~t~~gk 237 (549)
T 3eya_A 161 GDVALKPAPEGATM-HWYHA--PQPVVTPEEEELRKLAQLLRYSSNIALMCGSGCAGAHKELVEFAGKIKAPIVHALRGK 237 (549)
T ss_dssp HHHHTSBCCTTCCC-CCCCC--CCCEEECCHHHHHHHHHHHHTCCSEEEEECGGGTTCHHHHHHHHHHHTCCEEECGGGH
T ss_pred hhHhhcccCccccc-ccccc--CCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhCCCEEECCccC
Confidence 99998765321100 00000 0111135688999999999999999999999988888999999999999999999999
Q ss_pred CCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcceEeccH
Q 048725 327 GSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADL 406 (661)
Q Consensus 327 g~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~ 406 (661)
|.||++||+++|++|..|+..+++++++||+||++|+++++.. .+.++.++||||+|+.++++++++++.+.+|+
T Consensus 238 g~~~~~hp~~~G~~G~~~~~~~~~~~~~aDlvl~iG~~~~~~~-----~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~ 312 (549)
T 3eya_A 238 EHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQFPYRA-----FYPTDAKIIQIDINPASIGAHSKVDMALVGDI 312 (549)
T ss_dssp HHHSSSCTTBCCCCSTTSCHHHHHHHHHCSEEEEESCCCCCGG-----GSCSSSEEEEEESCGGGTTSSSCCSEEEECCH
T ss_pred cCCCCCCcccccCCCCCCCHHHHHHHHhCCEEEEECCCCCccc-----cCCCCCeEEEEeCCHHHhCCCCCCCeEEEeCH
Confidence 9999999999999999999999999999999999999986431 23456899999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHH----hhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEEEEcCChhHHH
Q 048725 407 KLALKGINRILGGKDAEGRFDFSAWREELDEQK----VKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMW 482 (661)
Q Consensus 407 ~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~----~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~~ 482 (661)
+.+|++|.+.+.... ...|.+++.+.. .............+++..+++.|++.++++.+++.|+|++.+|
T Consensus 313 ~~~l~~L~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~ 386 (549)
T 3eya_A 313 KSTLRALLPLVEEKA------DRKFLDKALEDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFAADDAIFTCDVGTPTVW 386 (549)
T ss_dssp HHHHHHHGGGSCCCC------CCHHHHHHHHHHHHHHHHHHHTSCCCSSCBCHHHHHHHHHHHSCTTCEEEECTTHHHHH
T ss_pred HHHHHHHHHhccccC------cHHHHHHHHHHHHHHHHHHhhhcCCCCCCcCHHHHHHHHHhhCCCCCEEEEcCcHHHHH
Confidence 999999988775422 123444332221 1110001112346899999999999999999999999999999
Q ss_pred HHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchhH
Q 048725 483 AAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMV 562 (661)
Q Consensus 483 ~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~ 562 (661)
..++++...+++++.++++|+||+++|+|+|+++++|+++||+++|||+|+|+++||+|++++++|+++||+||++|||+
T Consensus 387 ~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~~~~~vv~i~GDGs~~~~~~~L~ta~~~~l~~~ivv~nN~~~g~~ 466 (549)
T 3eya_A 387 AARYLKMNGKRRLLGSFNHGSMANAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMKLPVKIVVFNNSVLGFV 466 (549)
T ss_dssp HHHHCCCCSSCEEECCTTTCCTTCHHHHHHHHHHHSTTSCEEEEEEHHHHHHTGGGHHHHHHTTCCCEEEEEECSBCCCC
T ss_pred HHHhCccCCCCcEEeCCCCchhhhHHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEEEEeCCccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCCCcCC
Q 048725 563 MQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLP 640 (661)
Q Consensus 563 ~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~~~~p 640 (661)
+..|.... .......+ ..+||.++|++||+++++|++++||+++|+++++.+||+||||++++++.++|
T Consensus 467 ~~~~~~~~-~~~~~~~~--------~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~gp~liev~~~~~~~~~p 535 (549)
T 3eya_A 467 AMEMKAGG-YLTDGTEL--------HDTNFARIAEACGITGIRVEKASEVDEALQRAFSIDGPVLVDVVVAKEELAIP 535 (549)
T ss_dssp -------------CCBC--------CCCCHHHHHHHTTSEEEEECSGGGHHHHHHHHHHSSSCEEEEEEBCCCCSCCC
T ss_pred HHHHHhcC-CCCcCCcC--------CCCCHHHHHHHcCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeccccccCC
Confidence 76553211 11111111 12799999999999999999999999999999999999999999999987665
No 4
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=100.00 E-value=4e-96 Score=837.48 Aligned_cols=552 Identities=26% Similarity=0.375 Sum_probs=478.6
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcC-CCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhH
Q 048725 86 QPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRS-NNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGAT 164 (661)
Q Consensus 86 ~~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~-~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~ 164 (661)
..|+++++|++.|+++||++|||+||+++++|+++|.++ ++|++|.++||++|+|||+||||+||||+||++|+|||++
T Consensus 2 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~i~~v~~~hE~~Aa~~A~GyAr~tg~p~v~~~TsGpG~~ 81 (589)
T 2pgn_A 2 AIKRGADLIVEALEEYGTEQVVGFIGHTSHFVADAFSKSHLGKRVINPATELGGAWMVNGYNYVKDRSAAVGAWHCVGNL 81 (589)
T ss_dssp CEEEHHHHHHHHHHHTTCCEEEEECSGGGHHHHHHHHTSTTSTTCBCCSSHHHHHHHHHHHHHHHTSCCEEEEEEGGGGG
T ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHhcCCCCeEEEeCcHHHHHHHHHHHHHHHCCCEEEEEecCchHH
Confidence 357899999999999999999999999999999999986 6799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCcEEEEecCCCCcccCCC-CCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEE
Q 048725 165 NLVSGLADALLDSVPLVAITGQVPRRMIGTD-AFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLI 243 (661)
Q Consensus 165 N~l~gl~~A~~~~iPll~ItG~~p~~~~g~~-~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I 243 (661)
|+++||++||.+++|||+||||+|....+++ .+|++||.+ +++++||++++.+++++++.+++||+.|.++|+|||||
T Consensus 82 N~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~Q~~d~~~-~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l 160 (589)
T 2pgn_A 82 LLHAAMQEARTGRIPAVHIGLNSDGRLAGRSEAAQQVPWQS-FTPIARSTQRVERLDKVGEAIHEAFRVAEGHPAGPAYV 160 (589)
T ss_dssp GCHHHHHHHHHTTCCEEEEEEESCGGGTTCTTCSSCCCGGG-GTTTSSEEEECCSGGGHHHHHHHHHHHHTSSSCCEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEecCCcccccCCCCcccccChhh-ccccEEEEeecCCHHHHHHHHHHHHHHHhcCCCccEEE
Confidence 9999999999999999999999999999999 999999999 99999999999999999999999999999999999999
Q ss_pred EeccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeee
Q 048725 244 DVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVAS 321 (661)
Q Consensus 244 ~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~t 321 (661)
+||.|++.++.......+.... ........++ +.+++++++|.+|+||+|++|+++. ++.+++++|+|++|+||++
T Consensus 161 ~iP~dv~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~v~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~ 238 (589)
T 2pgn_A 161 DIPFDLTADQIDDKALVPRGAT-RAKSVLHAPN-EDVREAAAQLVAAKNPVILAGGGVARSGGSEALLKLAEMVGVPVVT 238 (589)
T ss_dssp EEETHHHHCEEECTTTSCCCCC-CCCCCCCCCH-HHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHHHTCCEEE
T ss_pred EeCHhhhhcccccccccccccc-cCCccCCChH-HHHHHHHHHHHhCCCeEEEECCCcccccHHHHHHHHHHHhCCCEEE
Confidence 9999998654321100000000 0111001234 7799999999999999999999885 5789999999999999999
Q ss_pred cCCCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcce
Q 048725 322 TLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVS 401 (661)
Q Consensus 322 t~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~ 401 (661)
|++|||.+|++||+++|+.|..++..++++++++|+||+||+++.++.++ |..|.++.++||||+|+.++++++.+++.
T Consensus 239 t~~~~g~~~~~~p~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~-~~~~~~~~~~i~id~d~~~~~~~~~~~~~ 317 (589)
T 2pgn_A 239 TSTGAGVFPETHALAMGSAGFCGWKSANDMMAAADFVLVLGSRLSDWGIA-QGYITKMPKFVHVDTDPAVLGTFYFPLLS 317 (589)
T ss_dssp CTTTTTSSCTTSTTEEEECSTTSCHHHHHHHHHCSEEEEESCCCCTTTTT-TTTTCCCCSEEEEESCGGGTTSSSCCSEE
T ss_pred ccccCccCCCCChhhcCCccccCCHHHHHHHhhCCEEEEECCCccccccc-ccccCCCCeEEEEeCCHHHHCCCcCCCEE
Confidence 99999999999999999999999988999999999999999999888877 77776778999999999999999999999
Q ss_pred EeccHHHHHHHHHHHhcCCCC-C--CCCCcHHHH--HHHHH-HHhhCC-CCcCCCCCCCChHHHHHHHhhhcCCCcEEEE
Q 048725 402 VCADLKLALKGINRILGGKDA-E--GRFDFSAWR--EELDE-QKVKYP-LSFKTFEESIPPQYAIQVLDELTNGEAIIST 474 (661)
Q Consensus 402 i~~D~~~~L~~L~~~l~~~~~-~--~~~~~~~w~--~~l~~-~~~~~~-~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~ 474 (661)
+.+|++.+|++|.+.+..... . .......|. +++.+ .++ .. .........+++..+++.|.+.++++.+++.
T Consensus 318 i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~iv~~ 396 (589)
T 2pgn_A 318 VVADAKTFMEQLIEVLPGTSGFKAVRYQERENFRQATEFRAAWDG-WVREQESGDGMPASMFRAMAEVRKVQRPEDIIVT 396 (589)
T ss_dssp EECCHHHHHHHHHHHGGGSTTCCCCCGGGSTTHHHHHHHHHHHHH-HHHHHTCCCCSSCCHHHHHHHHHHTCCTTCEEEE
T ss_pred EEeCHHHHHHHHHHHhhhcccccccccccchhhccHHHHHHHHHH-HHhhhccCCCCCcCHHHHHHHHHHhCCCCCEEEE
Confidence 999999999999987752100 0 001123465 44443 221 10 0000023458999999999999999999999
Q ss_pred cCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEE
Q 048725 475 GVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLL 554 (661)
Q Consensus 475 d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~ 554 (661)
|+|++.+|..++++...++++++++++|+||+++|+|+|+++++|+++||+++|||+|+|+++||+|++++++|+++||+
T Consensus 397 d~g~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L~ta~~~~l~~~ivv~ 476 (589)
T 2pgn_A 397 DIGNHTLPMFGGAILQRPRRLVTSMAEGILGCGFPMALGAQLAEPNSRVFLGTGDGALYYHFNEFRVAVEHKLPVITMVF 476 (589)
T ss_dssp CSSTTHHHHHHHCCCSSTTCEESCTTTCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEE
T ss_pred cCchHHHHHHHhcccCCCCcEECCCCcchhhhHHHHHHHHHHhCCCCcEEEEEeeHHHHhhHHHHHHHHHhCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCC
Q 048725 555 NNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPH 634 (661)
Q Consensus 555 NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~ 634 (661)
||++|+|++++|...|..... +.+. .+||.++|++||+++++|++.+||+++|+++++.+||.||||++++
T Consensus 477 nN~~~~~~~~~~~~~~~~~~~-~~~~--------~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~gp~liev~~~~ 547 (589)
T 2pgn_A 477 TNESYGANWTLMNHQFGQNNW-TEFM--------NPDWVGIAKAFGAYGESVRETGDIAGALQRAIDSGKPALIEIPVSK 547 (589)
T ss_dssp ECSBCHHHHHHHHHHHSSCCS-CBCC--------CCCHHHHHHHHTCEEEECTTTCCHHHHHHHHHHHCSCEEEEEECCS
T ss_pred ECCCcccchHHHHhhcCCCcc-ccCC--------CCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 999999999888776643211 2222 2799999999999999999999999999999998999999999999
Q ss_pred CCCcCCcCCCCCcccccc
Q 048725 635 QEHVLPMIPSGGAFKDVI 652 (661)
Q Consensus 635 ~~~~~p~~~~~~~~~~~~ 652 (661)
.+.+.|+ +.+....+++
T Consensus 548 ~~~~~~~-~~g~~~~~~~ 564 (589)
T 2pgn_A 548 TQGLASD-PVGGVGPNLL 564 (589)
T ss_dssp SSSTTTC-CSSCCCCCCS
T ss_pred CCCcCcc-CCCcchHhhc
Confidence 9988776 7777777775
No 5
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=100.00 E-value=3.1e-95 Score=831.87 Aligned_cols=531 Identities=24% Similarity=0.390 Sum_probs=461.8
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcC-CCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRS-NNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATN 165 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~-~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N 165 (661)
+|+++|+|++.|+++||++|||+||+++++|+++|.++ ++|++|.++||++|+|||+||||+||||+||++|+|||++|
T Consensus 10 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~dal~~~~~~i~~i~~~hE~~Aa~aA~GyAr~tg~~gv~~~TsGpG~~N 89 (603)
T 4feg_A 10 NILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAGPGGTH 89 (603)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHTTTTSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHT
T ss_pred eeeHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHHHhccCCCeEEEecChHHHHHHHHHHHHHhCCceEEEecCCchHHH
Confidence 57899999999999999999999999999999999986 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEe
Q 048725 166 LVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDV 245 (661)
Q Consensus 166 ~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~i 245 (661)
+++||++|+.+++|||+||||+|...++++++|++||.+++++++||++++.+++++++.+++||+.|.+ ++|||||+|
T Consensus 90 ~~~gia~A~~~~vPvl~itG~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~i 168 (603)
T 4feg_A 90 LMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYA-HQGVAVVQI 168 (603)
T ss_dssp THHHHHHHHHTTCCEEEEEEECCTTTTTSCCTTCCCCGGGGTTTCSEEEECCCSTTHHHHHHHHHHHHHH-HTSEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEecCCcccccCCCccccccHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHhc-CCCCEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 569999999
Q ss_pred ccchhhhccCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCccchHHHHHHHHHHhCCCeeecCC
Q 048725 246 PKDIQQQLAVPN-WNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLM 324 (661)
Q Consensus 246 P~dv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~~a~~~l~~lae~lg~PV~tt~~ 324 (661)
|.|++.+++... ...+... ........++++.+++++++|++||||+|++|+|+.++.+++++|+|++|+||++|++
T Consensus 169 P~dv~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~l~~A~rPvIl~G~g~~~a~~~l~~lae~~~~PV~~t~~ 246 (603)
T 4feg_A 169 PVDLPWQQIPAEDWYASANS--YQTPLLPEPDVQAVTRLTQTLLAAERPLIYYGIGARKAGKELEQLSKTLKIPLMSTYP 246 (603)
T ss_dssp ETTGGGSEEETTTCCCCGGG--CCCCCCCBCCHHHHHHHHHHHHHCSSEEEEECGGGTTCHHHHHHHHHHHTCCEEECGG
T ss_pred ChhhhhccCCcccccccccc--cCCCCCCCCCHHHHHHHHHHHhcCCCeEEEECCCchhHHHHHHHHHHHHCCCEEEcCc
Confidence 999998765321 1100000 0011122457889999999999999999999999977899999999999999999999
Q ss_pred CCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcceEec
Q 048725 325 GLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCA 404 (661)
Q Consensus 325 gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~ 404 (661)
|||.||++||+++|++|..++..+++++++||+||+||++++.. ..+..|.++.++||||+|+.++++++.+++.+++
T Consensus 247 gkg~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~--~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~ 324 (603)
T 4feg_A 247 AKGIVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYPFA--EVSKAFKNTRYFLQIDIDPAKLGKRHKTDIAVLA 324 (603)
T ss_dssp GTTSSCTTCTTBCCCCSSSSCHHHHHHHHHCSEEEEESCCCTTT--TTTTTTTTCSEEEEEESCGGGTTSSSCCSEEEES
T ss_pred cccCCCCCChhhcccCcccCcHHHHHHHHhCCEEEEECCCCCcc--cccccCCCCCeEEEEeCCHHHhCCccCCCEEEEe
Confidence 99999999999999999999999999999999999999999742 2223456678999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhC----CCCcCCCCCCCChHHHHHHHhhhcCCCcEEEEcCChhH
Q 048725 405 DLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKY----PLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQ 480 (661)
Q Consensus 405 D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~----~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~ 480 (661)
|++.+|++|++.+.... ...|.+.+.+..+.+ ..........+++.++++.|.+.++++.+++.|+|++.
T Consensus 325 D~~~~l~~L~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ivv~d~G~~~ 398 (603)
T 4feg_A 325 DAQKTLAAILAQVSERE------STPWWQANLANVKNWRAYLASLEDKQEGPLQAYQVLRAVNKIAEPDAIYSIDVGDIN 398 (603)
T ss_dssp CHHHHHHHHHHTCCCCC------CCHHHHHHHHHHHHHHHHHHHHHTCCSSBCCHHHHHHHHHHHCCTTCEEEECSSHHH
T ss_pred CHHHHHHHHHHhhhccC------ChHHHHHHHHHHHHHHHHhhhhhcCCCCCcCHHHHHHHHHHhCCCCCEEEECCchHH
Confidence 99999999998775422 123433322111110 00001123468999999999999999999999999999
Q ss_pred HHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcch
Q 048725 481 MWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLG 560 (661)
Q Consensus 481 ~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g 560 (661)
+|..+++....+++|+.++++|+||+++|+|+|++++.|+++||+++|||+|+|+++||+|++++++|+++||+||++|+
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~g~~G~~l~~A~Gaala~~~~~vv~~~GDG~~~~~~~~l~~a~~~~lp~~~vv~nN~~~~ 478 (603)
T 4feg_A 399 LNANRHLKLTPSNRHITSNLFATMGVGIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTNCQYG 478 (603)
T ss_dssp HHHHHHCCCCTTCEEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEEECSBCH
T ss_pred HHHHHhceeCCCCceecCcccccccchhHHHhhHHHhCCCCcEEEEeccHHHhhhHHHHHHHHHHCcCeEEEEEECCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHH--hCCCcEEEEEEeCCCC
Q 048725 561 MVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTML--DTPGPYLLDVIFPHQE 636 (661)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~--~~~gp~lIeV~~~~~~ 636 (661)
|+++.|...+... +++++. ..+||.++|++||+++++|++.++|+++|++++ +.+||+||||+++++.
T Consensus 479 ~~~~~~~~~~~~~----~~~~~~----~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~~~gP~lIev~~~~~~ 548 (603)
T 4feg_A 479 FIKDEQEDTNQND----FIGVEF----NDIDFSKIADGVHMQAFRVNKIEQLPDVFEQAKAIAQHEPVLIDAVITGDR 548 (603)
T ss_dssp HHHHHHHHHCSSC----CCSSBC----CCCCHHHHHHHTTCEEEEECBGGGHHHHHHHHHHHTTTSCEEEEEECCCCC
T ss_pred HHHHHHHHhcCCC----cccCcC----CCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHHhcCCCcEEEEEEeCCCC
Confidence 9987776543221 122211 127999999999999999999999999999999 8899999999997654
No 6
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=100.00 E-value=3.8e-95 Score=825.74 Aligned_cols=532 Identities=26% Similarity=0.417 Sum_probs=458.0
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNL 166 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~ 166 (661)
.|+++++|++.|+++||++|||+||+++++|+++|.+ ++|++|.++||++|+|||+||||+||||+||++|+|||++|+
T Consensus 10 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~-~~i~~v~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~ 88 (566)
T 1ozh_A 10 WAHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLD-SSIRIIPVRHEANAAFMAAAVGRITGKAGVALVTSGPGCSNL 88 (566)
T ss_dssp ESCHHHHHHHHHHHHTCCEEEEECCTTTHHHHHHGGG-SSSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTT
T ss_pred cCcHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHHHHHCCCEEEEEccChHHHHH
Confidence 4789999999999999999999999999999999988 579999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEec
Q 048725 167 VSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVP 246 (661)
Q Consensus 167 l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP 246 (661)
++||++|+.+++|||+||||+|....+++.+|++||.+++++++||++++.+++++++.+++||+.|.++|+|||||+||
T Consensus 89 ~~~l~~A~~~~vPll~itg~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~r~GPV~l~iP 168 (566)
T 1ozh_A 89 ITGMATANSEGDPVVALGGAVKRADKAKQVHQSMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLP 168 (566)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCTTTC------CCCHHHHHGGGCSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEeCCCccccCCCCcccccCHHHHHHHHhheEEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeecCC
Q 048725 247 KDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTLM 324 (661)
Q Consensus 247 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt~~ 324 (661)
.|++.++...... . .... . ....++.+.+++++++|.+||||+|++|+++. ++.+++++|+|++|+||++|++
T Consensus 169 ~dv~~~~~~~~~~-~--~~~~-~-~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~ 243 (566)
T 1ozh_A 169 QDVVDGPVSGKVL-P--ASGA-P-QMGAAPDDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQ 243 (566)
T ss_dssp HHHHHSCEEECCC-C--CCCS-C-EECCSCHHHHHHHHHHHHHCSSEEEEECGGGGSGGGHHHHHHHHHHHCCCEEECGG
T ss_pred hhhhhcccccccc-c--cccc-c-CCCCCCHHHHHHHHHHHHcCCCeEEEECCCcccccHHHHHHHHHHHHCCCEEEccc
Confidence 9998765421110 0 0000 1 11235678899999999999999999999985 5789999999999999999999
Q ss_pred CCCCCCCCCC-CCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccC-CCCeEEEEcCCchhhccCCCCcceE
Q 048725 325 GLGSFPGTDE-LSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFA-SRAKIVHIDIDSAEIGKNKQPHVSV 402 (661)
Q Consensus 325 gkg~~p~~hp-l~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~-~~~~vi~Id~d~~~i~~~~~~~~~i 402 (661)
|||.+|++|| +++|++|..++..+++++++||+||.+|+.+. ++.+..|. ++.++||||+|+.++++++.+++.+
T Consensus 244 ~kg~~~~~~p~~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~~~---~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i 320 (566)
T 1ozh_A 244 AAGAVNQDNFSRFAGRVGLFNNQAGDRLLQLADLVICIGYSPV---EYEPAMWNSGNATLVHIDVLPAYEERNYTPDVEL 320 (566)
T ss_dssp GTTTCCTTTCTTEEEECSSBTTCHHHHHHHHCSEEEEESCCGG---GSCGGGTCCSCSEEEEEESSCCCCBTTBCCSEEE
T ss_pred cCCcCCCCChHhhcCCCcccCCHHHHHHHHhCCEEEEECCCCC---cCCccccCCCCCcEEEEeCCHHHhCCCCCCCEEE
Confidence 9999999999 99999999998888999999999999999643 22333343 3679999999999999999999999
Q ss_pred eccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCC----CCcCCCCCC-CChHHHHHHHhhhcCCCcEEEEcCC
Q 048725 403 CADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYP----LSFKTFEES-IPPQYAIQVLDELTNGEAIISTGVG 477 (661)
Q Consensus 403 ~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~----~~~~~~~~~-i~~~~~~~~l~~~l~~d~iv~~d~G 477 (661)
.+|++.+|++|.+.+.... ....|.+++.+.++... ......... +++..+++.|.+.++++.+++.|+|
T Consensus 321 ~~d~~~~l~~L~~~l~~~~-----~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~l~~~l~~~~iv~~d~G 395 (566)
T 1ozh_A 321 VGDIAGTLNKLAQNIDHRL-----VLSPQAAEILRDRQHQRELLDRRGAQLNQFALHPLRIVRAMQDIVNSDVTLTVDMG 395 (566)
T ss_dssp ESCHHHHHHHHHHTCCSCC-----CCCHHHHHHHHHHHHHHHHHHC-CCCCCCSSBCHHHHHHHHHHHCCTTEEEEECSS
T ss_pred EeCHHHHHHHHHHhccccC-----CcHHHHHHHHHHHHHhHhhhhhccccCCCCCcCHHHHHHHHHHhCCCCCEEEEcCc
Confidence 9999999999988765321 11346555443322211 000012234 8999999999999999999999999
Q ss_pred hhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCC
Q 048725 478 QHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQ 557 (661)
Q Consensus 478 ~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~ 557 (661)
++.+|..++++..+++++++++++|+||+++|+|+|++++.|+++||+++|||+|+|+++||+|++++++|+++||+||+
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L~ta~~~~l~~~ivv~nN~ 475 (566)
T 1ozh_A 396 SFHIWIARYLYTFRARQVMISNGQQTMGVALPWAIGAWLVNPERKVVSVSGDGGFLQSSMELETAVRLKANVLHLIWVDN 475 (566)
T ss_dssp HHHHHHHHTGGGCCCSEEECCCTTCCTTCHHHHHHHHHHHSTTSEEEEEEEHHHHHHHTTHHHHHHHHTCCEEEEEEECS
T ss_pred HHHHHHHHhcccCCCCeEEeCCCcccccchHHHHHHHHHhCCCCCEEEEEcChHHhccHHHHHHHHHhCCCcEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCCC
Q 048725 558 HLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEH 637 (661)
Q Consensus 558 g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~~ 637 (661)
+|+|++++|...++.. ..+.+. .+||.++|++||+++++|++.+||+++|+++++.+||.||||++++++.
T Consensus 476 ~~~~~~~~~~~~~~~~-~~~~~~--------~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~gp~liev~~~~~~~ 546 (566)
T 1ozh_A 476 GYNMVAIQEEKKYQRL-SGVEFG--------PMDFKAYAESFGAKGFAVESAEALEPTLRAAMDVDGPAVVAIPVDYRDN 546 (566)
T ss_dssp BCHHHHHHHHHHHSSC-CSCBCC--------CCCHHHHHHTTTSEEEECCSGGGHHHHHHHHHHSSSCEEEEEEBCCTTH
T ss_pred chhHHHHHHHHhcCCC-ccCcCC--------CCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCCCcC
Confidence 9999998887766432 111111 2799999999999999999999999999999999999999999998886
Q ss_pred cCCcCC
Q 048725 638 VLPMIP 643 (661)
Q Consensus 638 ~~p~~~ 643 (661)
|++|
T Consensus 547 --p~~~ 550 (566)
T 1ozh_A 547 --PLLM 550 (566)
T ss_dssp --HHHH
T ss_pred --CCcc
Confidence 6665
No 7
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=100.00 E-value=3.3e-95 Score=829.71 Aligned_cols=541 Identities=23% Similarity=0.326 Sum_probs=469.5
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcC-CCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhH
Q 048725 86 QPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRS-NNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGAT 164 (661)
Q Consensus 86 ~~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~-~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~ 164 (661)
.+|+++++|++.|+++||++|||+||+++++|+++|.++ ++|++|.++||++|+|||+||||+||||+||++|+|||++
T Consensus 2 ~~~~~a~~lv~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~i~~i~~~~E~~Aa~~A~GyAr~tgk~~v~~~tsGpG~~ 81 (590)
T 1v5e_A 2 NKINIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAVMQSKFGGNLGVTVGSGGPGAS 81 (590)
T ss_dssp CEEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHTTSSSTTCCCEEEECSSHHHHHHHHHHHHHTTCCCCEEEECTTHHHH
T ss_pred CCccHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHhcCCCCeEEeeCCHHHHHHHHHHHHHHHCCCEEEEeCcChHHH
Confidence 457999999999999999999999999999999999886 5799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEE
Q 048725 165 NLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLID 244 (661)
Q Consensus 165 N~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~ 244 (661)
|+++||++|+.+++|||+||||+|....+++++|++||.+++++++||++++.+++++++.+++||+.|.++|+|||||
T Consensus 82 N~~~gl~~A~~~~vPll~Itg~~p~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l- 160 (590)
T 1v5e_A 82 HLINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQNPMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKRGVAVLE- 160 (590)
T ss_dssp TTHHHHHHHHHHTCCEEEEEEECCGGGTTTTCTTCCCCHHHHHTTCSEEEECCSGGGHHHHHHHHHHHHHHTTSEEEEE-
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCcccCCCCcccccCHHHHHHhhccEEEEeCCHHHHHHHHHHHHHHHhcCCCceEEE-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccchhhhccCCCCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCccchHHHHHHHHHHhCCCeeec
Q 048725 245 VPKDIQQQLAVPNWN--QPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVAST 322 (661)
Q Consensus 245 iP~dv~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~~a~~~l~~lae~lg~PV~tt 322 (661)
||.|++.++...... .....+.+.. + .++.+.+++++++|.+++||+|++|+|+.++.+++.+|+|++++||++|
T Consensus 161 iP~dv~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~i~~~~~~l~~a~rpvil~G~g~~~a~~~l~~lae~~~~Pv~~t 237 (590)
T 1v5e_A 161 VPGDFAKVEIDNDQWYSSANSLRKYAP--I-APAAQDIDAAVELLNNSKRPVIYAGIGTMGHGPAVQELARKIKAPVITT 237 (590)
T ss_dssp EETTGGGCEEEGGGCCCCGGGCCCCCC--C-CCCHHHHHHHHHHHHHCSSEEEEECGGGTTCHHHHHHHHHHHTCCEEEC
T ss_pred EccchhhcccCcccccccccccccCCC--C-CCCHHHHHHHHHHHHhCCCeEEEEcCchhHHHHHHHHHHHHHCCCEEEc
Confidence 999998754321100 0001111111 1 3467889999999999999999999987445789999999999999999
Q ss_pred CCCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCc-CCcccccCCCCeEEEEcCCchhhccCCCCcce
Q 048725 323 LMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRV-TGKLEAFASRAKIVHIDIDSAEIGKNKQPHVS 401 (661)
Q Consensus 323 ~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~-t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~ 401 (661)
++|||.+|++||+++|+.|..|+..+++++++||+||++|++++++. ++.. | ++.++||||+|+.++++++.+++.
T Consensus 238 ~~g~g~~~~~~p~~~G~~g~~g~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~--~-~~~~~i~id~d~~~~~~~~~~~~~ 314 (590)
T 1v5e_A 238 GKNFETFEWDFEALTGSTYRVGWKPANETILEADTVLFAGSNFPFSEVEGTF--R-NVDNFIQIDIDPAMLGKRHHADVA 314 (590)
T ss_dssp TTCGGGSCTTCTTEEEESSSSSCHHHHHHHHHCSEEEEESCCCTTTTTTTTT--T-TCSEEEEEESCGGGTTSSSCCSEE
T ss_pred cccCcCCCCCChhhCccCcccCCHHHHHHHHhCCEEEEECCCCcchhccccC--C-CCCeEEEEeCCHHHHCCCcCCCeE
Confidence 99999999999999999999999999999999999999999998765 2211 3 577999999999999999999999
Q ss_pred EeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCcC----CCCCCCChHHHHHHHhhhcCCCcEEEEcCC
Q 048725 402 VCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFK----TFEESIPPQYAIQVLDELTNGEAIISTGVG 477 (661)
Q Consensus 402 i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~----~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G 477 (661)
+.+|++.+|++|.+.+.... ...|.+++.+.++..+.... .....++++++++.|.+.++++.+++.|+|
T Consensus 315 i~gd~~~~l~~L~~~l~~~~------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G 388 (590)
T 1v5e_A 315 ILGDAALAIDEILNKVDAVE------ESAWWTANLKNIANWREYINMLETKEEGDLQFYQVYNAINNHADEDAIYSIDVG 388 (590)
T ss_dssp EESCHHHHHHHHHHHSCCCC------CCHHHHHHHHHHHHHHHHHHHHHTCCSSBCCHHHHHHHHHHHSCTTCEEEECSS
T ss_pred EEcCHHHHHHHHHHhhccCC------cHHHHHHHHHHHHHhHhhhhhcccCCCCCcCHHHHHHHHHhhCCCCCEEEECCc
Confidence 99999999999998775321 13465544433322110000 112348899999999999999999999999
Q ss_pred hhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCC
Q 048725 478 QHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQ 557 (661)
Q Consensus 478 ~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~ 557 (661)
++.+|..++++...++++++++++|+||+++|+|+|+++|+|+++||+++|||+|+|+++||+|++++++|+++||+||+
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L~ta~~~~l~~~ivv~NN~ 468 (590)
T 1v5e_A 389 NSTQTSIRHLHMTPKNMWRTSPLFATMGIAIPGGLGAKNTYPDRQVWNIIGDGAFSMTYPDVVTNVRYNMPVINVVFSNT 468 (590)
T ss_dssp HHHHGGGGTCCCCTTSEEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEEECS
T ss_pred hHHHHHHHhcccCCCCeEEcCCCCCcccChHHHHHHHHHhCCCCeEEEEEechHHhchHHHHHHHHHhCCCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHh-hcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhC---CCcEEEEEEeC
Q 048725 558 HLGMVMQWEDRF-YKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDT---PGPYLLDVIFP 633 (661)
Q Consensus 558 g~g~~~~~~~~~-~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~---~gp~lIeV~~~ 633 (661)
+|+|++++|... | . + .+.. ...+||.++|++||+++++|++.+||+++|+++++. +||+||||+++
T Consensus 469 ~~~~~~~~q~~~~~-~-~----~~~~----~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~~~gp~liev~~~ 538 (590)
T 1v5e_A 469 EYAFIKNKYEDTNK-N-L----FGVD----FTDVDYAKIAEAQGAKGFTVSRIEDMDRVMAEAVAANKAGHTVVIDCKIT 538 (590)
T ss_dssp SCTTGGGTTSSSCC-S-C----CCCC----CCCCCHHHHHHHTTSEEEEECBHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred chHHHHHHHHHhcC-C-C----cccc----CCCCCHHHHHHHcCCEEEEECCHHHHHHHHHHHHHhcCCCCCEEEEEEec
Confidence 999997655432 2 1 1 1110 112799999999999999999999999999999987 99999999999
Q ss_pred CCC--------C------------cCCcCCCCCccc
Q 048725 634 HQE--------H------------VLPMIPSGGAFK 649 (661)
Q Consensus 634 ~~~--------~------------~~p~~~~~~~~~ 649 (661)
+++ . ++|+++.+....
T Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 574 (590)
T 1v5e_A 539 QDRPIPVETLKLDSKLYSEDEIKAYKERYEAANLVP 574 (590)
T ss_dssp SCCCCCTTSCCCCTTTSCHHHHHHHHHHTTCTTCCC
T ss_pred ccccccccccccccccccccccccccccccCCCCCC
Confidence 988 6 778888877766
No 8
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=100.00 E-value=2.5e-94 Score=819.27 Aligned_cols=536 Identities=26% Similarity=0.396 Sum_probs=464.7
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNL 166 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~ 166 (661)
+|+++|+|++.|+++||++|||+||+++++|+++|.+++ |++|.++||++|+|||+||||+||||+||++|+|||++|+
T Consensus 3 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~-i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~ 81 (563)
T 2uz1_A 3 MITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHD-VPIIDTRHEAAAGHAAEGYARAGAKLGVALVTAGGGFTNA 81 (563)
T ss_dssp EEEHHHHHHHHHHHHTCCCEEECCCGGGHHHHHHHHHHT-CCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTTHHHHTT
T ss_pred ccCHHHHHHHHHHHCCCCEEEECCCCchHHHHHHHHhcC-CcEEeeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHHH
Confidence 478999999999999999999999999999999998764 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCCcccCCCCCCC-CCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEe
Q 048725 167 VSGLADALLDSVPLVAITGQVPRRMIGTDAFQE-TPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDV 245 (661)
Q Consensus 167 l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~-~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~i 245 (661)
++||++|+.+++|||+||||++....+++.+|+ +||.+++++++||++++.+++++++.+++||+.|+++|+|||||+|
T Consensus 82 ~~~l~~A~~~~~Pll~itg~~~~~~~~~~~~Q~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~i 161 (563)
T 2uz1_A 82 VTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAAPITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDL 161 (563)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCGGGTTSCCTTCCCCHHHHHGGGCSEEEECCCGGGHHHHHHHHHHHHHSSSCCCEEEEE
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcccCCchhhhhhccHHHHhhhhhceEEEcCCHHHHHHHHHHHHHHhcCCCCceEEEEe
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeec
Q 048725 246 PKDIQQQLAVP-NWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVAST 322 (661)
Q Consensus 246 P~dv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt 322 (661)
|.|+++++..+ ....+. ... ...+..++.+.+++++++|.++|||+|++|+++. ++.+++++|+|++|+||++|
T Consensus 162 P~dv~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~v~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~t 238 (563)
T 2uz1_A 162 PWDILMNQIDEDSVIIPD-LVL--SAHGARPDPADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVFAD 238 (563)
T ss_dssp EHHHHHCEEEGGGSCCCC-CCC--CSSCCBCCHHHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHHHCCCEEEC
T ss_pred CHHHhhhhcccccccccc-ccc--CCCCCCCCHHHHHHHHHHHHcCCCcEEEECCccccccHHHHHHHHHHHhCCcEEEc
Confidence 99965443211 100010 100 0012235678899999999999999999999985 56899999999999999999
Q ss_pred CCCCCCCCCC-CCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCC-CCeEEEEcCCchhhccCCCCcc
Q 048725 323 LMGLGSFPGT-DELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFAS-RAKIVHIDIDSAEIGKNKQPHV 400 (661)
Q Consensus 323 ~~gkg~~p~~-hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~-~~~vi~Id~d~~~i~~~~~~~~ 400 (661)
++|||.+|++ ||+++|++| .++..+++ ++++|+||.+|+++.++.++.|..|.+ +.++||||+|+.++++++.+++
T Consensus 239 ~~~~g~~~~~~~p~~~G~~g-~~~~~~~~-~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~ 316 (563)
T 2uz1_A 239 YEGLSMLSGLPDAMRGGLVQ-NLYSFAKA-DAAPDLVLMLGARFGLNTGHGSGQLIPHSAQVIQVDPDACELGRLQGIAL 316 (563)
T ss_dssp GGGGGGGTTSCGGGEEEEGG-GGGGTTTT-TCCCSEEEEESCCSSGGGTTTSCSSSCTTSEEEEECSCGGGTTSSSCCSE
T ss_pred CcccCcCCCCCChhhcCCCC-CCCHHHHh-hcCCCEEEEECCCCcccccccccccCCCCCeEEEEECCHHHhCCCCCCCe
Confidence 9999999999 999999999 88888888 999999999999999988877777766 7899999999999999999999
Q ss_pred eEeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHH-HHhhCC----CCcCCCCCCCChHHHHHHHhhhcCCCcEEEEc
Q 048725 401 SVCADLKLALKGINRILGGKDAEGRFDFSAWREELDE-QKVKYP----LSFKTFEESIPPQYAIQVLDELTNGEAIISTG 475 (661)
Q Consensus 401 ~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~-~~~~~~----~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d 475 (661)
.+.+|++.+|++|.+.+..... ......|.+++.+ .++... .... .. .+++..+++.|.+.++++.+++.|
T Consensus 317 ~i~~d~~~~l~~L~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~l~~~l~~~~iv~~d 392 (563)
T 2uz1_A 317 GIVADVGGTIEALAQATAQDAA--WPDRGDWCAKVTDLAQERYASIAAKSSS-EH-ALHPFHASQVIAKHVDAGVTVVAD 392 (563)
T ss_dssp EECSCHHHHHHHHHHHHTTSCC--CCCCHHHHHHHHHHHHHHHHHHHHHCCC-SS-SCCHHHHHHHHHTTCSTTEEEEEC
T ss_pred EEEcCHHHHHHHHHHhhhhccc--ccCcHHHHHHHHHHHHHHhHhhhhcccc-CC-CcCHHHHHHHHHHhCCCCcEEEEc
Confidence 9999999999999988754210 0112446544443 222111 0001 12 589999999999999999999999
Q ss_pred CChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhC--CCCcEEEEECCcccccChHHHHHHHHcCCCeEEEE
Q 048725 476 VGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVAN--PDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILL 553 (661)
Q Consensus 476 ~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~--p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV 553 (661)
+|++.+|..+++...++++++.++++|+||+++|+|+|+++|. |+++||+++|||+|+|+++||+|++++++|+++||
T Consensus 393 ~G~~~~~~~~~~~~~~~~~~~~~~g~g~~G~~l~~AiGaa~a~~~~~~~vv~i~GDG~~~~~~~~L~ta~~~~l~~~ivv 472 (563)
T 2uz1_A 393 GALTYLWLSEVMSRVKPGGFLCHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGDGSVGYSIGEFDTLVRKQLPLIVII 472 (563)
T ss_dssp SSHHHHHHHHHHTTSCCSEEECCCTTCCTTTHHHHHHHHHHHHHHHTCEEEEEEEHHHHGGGTTHHHHHHHHTCCCEEEE
T ss_pred CchHHHHHHHhccccCCCeEECCCCCccccChHHHHHHHHHHhhCCCCeEEEEEccHHHhCCHHHHHHHHHhCCCeEEEE
Confidence 9999999999999999999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred EeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeC
Q 048725 554 LNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFP 633 (661)
Q Consensus 554 ~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~ 633 (661)
+||++|+|++++|...|+.. .+.+++. ..+||.++|++||+++++|++.+||+++|+++++.+||+||||+++
T Consensus 473 ~nN~~~~~~~~~~~~~~~~~---~~~~~~~----~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~gp~liev~~~ 545 (563)
T 2uz1_A 473 MNNQSWGATLHFQQLAVGPN---RVTGTRL----ENGSYHGVAAAFGADGYHVDSVESFSAALAQALAHNRPACINVAVA 545 (563)
T ss_dssp EECSBCHHHHHHHHHHTCTT---CCCSCBC----CCCCHHHHHHHTTCEEEEECSHHHHHHHHHHHHHSSSCEEEEEECC
T ss_pred EeCCcchHHHHHHHHhcCCC---cccCCcC----CCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHHCCCCEEEEEEec
Confidence 99999999988876665430 1222211 1279999999999999999999999999999999999999999999
Q ss_pred CCCCcCC
Q 048725 634 HQEHVLP 640 (661)
Q Consensus 634 ~~~~~~p 640 (661)
+++ ..|
T Consensus 546 ~~~-~~p 551 (563)
T 2uz1_A 546 LDP-IPP 551 (563)
T ss_dssp SCC-CCH
T ss_pred ccc-CCc
Confidence 543 444
No 9
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=100.00 E-value=6.5e-94 Score=823.76 Aligned_cols=557 Identities=30% Similarity=0.508 Sum_probs=473.5
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHh-CCcEEEEEccchhhHH
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS-GKPGICIATSGPGATN 165 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~t-g~~gv~~~tsGpG~~N 165 (661)
+++|+|+|++.|+++||++|||+||+++++|+++|.++++|++|.++||++|+|||+||||+| |+++||++|+|||++|
T Consensus 26 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~GyAr~tgg~~~v~~~TsGpG~~N 105 (616)
T 2pan_A 26 KMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTD 105 (616)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHHHHSTTCCEEEEECSTHHHHT
T ss_pred cCcHHHHHHHHHHHCCCCEEEECCCCccHHHHHHHHhcCCCcEEeeCCHHHHHHHHHHHHHhcCCCceEEEeCCCchHHH
Confidence 368999999999999999999999999999999998766799999999999999999999999 8999999999999999
Q ss_pred HHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEe
Q 048725 166 LVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDV 245 (661)
Q Consensus 166 ~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~i 245 (661)
+++||++|+.+++|||+||||+|....+++++|++||.+++++++||++++.+++++++++++||+.|+++|+|||||+|
T Consensus 106 ~~~~l~~A~~~~vPlvvItg~~p~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~~r~GPV~l~i 185 (616)
T 2pan_A 106 MITALYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLVDL 185 (616)
T ss_dssp SHHHHHHHHHTTCCEEEEEEECCGGGTTTTCTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCCEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEecCCcccccCcccccccCHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcCCCceEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeecC
Q 048725 246 PKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTL 323 (661)
Q Consensus 246 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt~ 323 (661)
|.|++..+....+.....++.+ ...+..+.+++++++|.++|||+|++|+|+. ++.+++.+|+|++|+||++|+
T Consensus 186 P~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~PV~~t~ 261 (616)
T 2pan_A 186 PFDVQVAEIEFDPDMYEPLPVY----KPAASRMQIEKAVEMLIQAERPVIVAGGGVINADAAALLQQFAELTSVPVIPTL 261 (616)
T ss_dssp EHHHHHSEEECCGGGCCCCCCC----CCCCCHHHHHHHHHHHHTCSSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEECT
T ss_pred chhhhhcccccccccccccccC----CCCCCHHHHHHHHHHHHcCCCeEEEECCCcCcccHHHHHHHHHHHhCCCEEEcc
Confidence 9999865432111111111111 1123477899999999999999999999885 568999999999999999999
Q ss_pred CCCCCCCCCCCCCCcccCCCCcH-HHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcceE
Q 048725 324 MGLGSFPGTDELSLQMLGMHGTV-YANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSV 402 (661)
Q Consensus 324 ~gkg~~p~~hpl~lg~~G~~g~~-~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 402 (661)
++||.+|++||+++|++|..++. .++++++++|+||+||++++++.++.+..|.++.++||||+|+.++++++++++.+
T Consensus 262 ~~~g~~~~~hp~~~G~~g~~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i 341 (616)
T 2pan_A 262 MGWGCIPDDHELMAGMVGLQTAHRYGNATLLASDMVFGIGNRFANRHTGSVEKYTEGRKIVHIDIEPTQIGRVLCPDLGI 341 (616)
T ss_dssp TTTTSSCTTSTTBCCCCSSSSCCHHHHHHHHHCSEEEEESCCCCHHHHSSHHHHHTTCEEEEEESCGGGTTSSSCCSSCE
T ss_pred ccCccCCCCCccccCCccccCCHHHHHHHHHhCCEEEEECCCCcccccCcccccCCCCeEEEEeCCHHHhCCCCCCCeEE
Confidence 99999999999999999988887 88999999999999999998877777767777889999999999999999999999
Q ss_pred eccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCcCC-CCCCCChHHHHHHHhhhcCCCcEEEEcCChhHH
Q 048725 403 CADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFKT-FEESIPPQYAIQVLDELTNGEAIISTGVGQHQM 481 (661)
Q Consensus 403 ~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~-~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~ 481 (661)
.+|++.+|++|.+.+.............|.+.+.+.+...+..... ....+++..+++.|.+.++++.+++.|+|++.+
T Consensus 342 ~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ivv~d~G~~~~ 421 (616)
T 2pan_A 342 VSDAKAALTLLVEVAQEMQKAGRLPCRKEWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGRDVCYVTTIGLSQI 421 (616)
T ss_dssp ECCHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTTSEECCCCCCSSBCHHHHHHHHHHHSCTTEEEEECSSHHHH
T ss_pred EcCHHHHHHHHHHHhhhcccccccccHHHHHHHHHHHHhhhhhccccCCCCcCHHHHHHHHHHhCCCCcEEEEcCcHHHH
Confidence 9999999999988764200000112235665555444433221111 233589999999999999999999999999999
Q ss_pred HHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchh
Q 048725 482 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGM 561 (661)
Q Consensus 482 ~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~ 561 (661)
|..++++..++++|++++++|+||+++|+|+|+++|+|+++||+++|||+|+|+++||+|++++++|+++||+||++|+|
T Consensus 422 ~~~~~~~~~~~~~~~~~g~~G~~G~~l~~AiGaala~~~~~vv~i~GDGs~~~~~~~L~ta~~~~l~~~ivv~NN~~~~~ 501 (616)
T 2pan_A 422 AAAQMLHVFKDRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDFDFQFLIEELAVGAQFNIPYIHVLVNNAYLGL 501 (616)
T ss_dssp HHHHHCCCCSTTSEEECTTTCCTTCHHHHHHHHHHHCTTCEEEEEEEHHHHHHTGGGHHHHHHTTCCCEEEEEECSBCHH
T ss_pred HHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchhhhCCHHHHHHHHHhCCCeEEEEEECCcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccc----ccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh----CCCcEEEEEEeC
Q 048725 562 VMQWEDRFYKAN----RAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD----TPGPYLLDVIFP 633 (661)
Q Consensus 562 ~~~~~~~~~~~~----~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~----~~gp~lIeV~~~ 633 (661)
++++|...+... +.......+. ....+||.++|++||+++++|++.+||+++|+++++ .+||+||||+++
T Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~~~~gp~lIev~~~ 579 (616)
T 2pan_A 502 IRQSQRAFDMDYCVQLAFENINSSEV--NGYGVDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQYRVPVVVEVILE 579 (616)
T ss_dssp HHHHGGGGTCCCSCBCCCCCTTCGGG--TTCCCCHHHHHHHTTCEEEEECSGGGHHHHHHHHHHHHHHHCSCEEEEEEBC
T ss_pred HHHHHHHhcCCccccccccccccccC--CCCCCCHHHHHHHcCCeEEEECCHHHHHHHHHHHHhhcccCCCcEEEEEEec
Confidence 988776554320 0100000000 011269999999999999999999999999999998 799999999999
Q ss_pred CCCCcCCcCCCCCccccccc
Q 048725 634 HQEHVLPMIPSGGAFKDVIT 653 (661)
Q Consensus 634 ~~~~~~p~~~~~~~~~~~~~ 653 (661)
+.+. ++.+..+.++..
T Consensus 580 ~~~~----~~~~~~~~~~~~ 595 (616)
T 2pan_A 580 RVTN----ISMGSELDNVME 595 (616)
T ss_dssp SCCC----CCBCSSGGGCBC
T ss_pred cccc----CCCCcchHHhhh
Confidence 8773 333455555543
No 10
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=100.00 E-value=2.9e-93 Score=811.76 Aligned_cols=530 Identities=26% Similarity=0.376 Sum_probs=459.2
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCC-cHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGA-SMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATN 165 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~-~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N 165 (661)
.++++++|++.|+++||++|||+||++ +++|+++|. + |++|.++||++|+|||+||||+||||+||++|+|||++|
T Consensus 11 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~~l~~al~--~-i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N 87 (573)
T 2iht_A 11 KPTAAHALLSRLRDHGVGKVFGVVGREAASILFDEVE--G-IDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGMTN 87 (573)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCCGGGGTCCSCSST--T-CEEEECSSHHHHHHHHHHHHHHHCSCEEEEECTTHHHHH
T ss_pred CccHHHHHHHHHHHCCCCEEEEecCCcchhHHHHHHc--C-CeEEeeCCHHHHHHHHHHHHHHHCCCEEEEEccCchHHH
Confidence 589999999999999999999999999 999999998 5 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCcEEEEecCCCCcccCC-CCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEE
Q 048725 166 LVSGLADALLDSVPLVAITGQVPRRMIGT-DAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLID 244 (661)
Q Consensus 166 ~l~gl~~A~~~~iPll~ItG~~p~~~~g~-~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~ 244 (661)
+++||++|+.+++|||+||||+|....++ +++|++||.+++++++||++++.+++++++.+++||+.|+++|+|||||+
T Consensus 88 ~~~~v~~A~~~~~Pll~itg~~~~~~~~~~~~~Q~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~ 167 (573)
T 2iht_A 88 LSTGIATSVLDRSPVIALAAQSESHDIFPNDTHQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFIS 167 (573)
T ss_dssp HHHHHHHHHHHTCCEEEEEEESCGGGCCTTTSTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHTBSSCCCEEEE
T ss_pred HHHHHHHHHhhCCCEEEEcccCcccccCCcCccccCCHHHHHHhHhhEEEEcCCHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred eccchhhhccCCC--CCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCe
Q 048725 245 VPKDIQQQLAVPN--WNQPIKLPGYMSRLP-KEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPV 319 (661)
Q Consensus 245 iP~dv~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV 319 (661)
||.|++.++.... .......+.+..... ..++.+.+++++++|.+||||+|++|+++. ++.+++.+|+|++|+||
T Consensus 168 iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv 247 (573)
T 2iht_A 168 LPVDLLGSSEGIDTTVPNPPANTPAKPVGVVADGWQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPV 247 (573)
T ss_dssp EEHHHHTCCTTCC---CCCCCCCCSSCBEEECTTHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHTCCE
T ss_pred ecchHhhhhhcccccCCccccccCCCCccccCCCCHHHHHHHHHHHHcCCCeEEEECCCccccCHHHHHHHHHHHHCCeE
Confidence 9999986541000 000001111111000 024567899999999999999999999875 57899999999999999
Q ss_pred eecCCCCCCCCCCCCCCCccc-----CCCCcHHHHHhhhcCCEEEEeCCC-CCCCcCCcccccCCCCeEEEEcCCchhhc
Q 048725 320 ASTLMGLGSFPGTDELSLQML-----GMHGTVYANYAVDKSDLLLAFGVR-FDDRVTGKLEAFASRAKIVHIDIDSAEIG 393 (661)
Q Consensus 320 ~tt~~gkg~~p~~hpl~lg~~-----G~~g~~~a~~~l~~aDlvL~vG~~-~~~~~t~~~~~~~~~~~vi~Id~d~~~i~ 393 (661)
++|++|||.+|++||+++|++ |..++..++++++++|+||.+|++ +.++.++.|.. .++.++||||+|+.+++
T Consensus 248 ~~t~~~~g~~~~~hp~~~G~~~~~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~-~~~~~~i~id~d~~~~~ 326 (573)
T 2iht_A 248 ITTYIAKGVLPVGHELNYGAVTGYMDGILNFPALQTMFAPVDLVLTVGYDYAEDLRPSMWQK-GIEKKTVRISPTVNPIP 326 (573)
T ss_dssp EECSTTTTSSCTTCTTEEEECCTTHHHHHTSCHHHHHHTTCCEEEEETCCGGGCCCHHHHCC-SSCCEEEEEESSCCSCT
T ss_pred EEecccCccCCCCCcCccCccccccCCCCCCHHHHHHHhhCCEEEEECCCccccccccccCC-CCCCeEEEEeCCHHHhC
Confidence 999999999999999999998 888888889999999999999999 87776665541 25679999999999999
Q ss_pred cCCCCcceEeccHHHHHHHHHHHhcCCC-CCCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCC----
Q 048725 394 KNKQPHVSVCADLKLALKGINRILGGKD-AEGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNG---- 468 (661)
Q Consensus 394 ~~~~~~~~i~~D~~~~L~~L~~~l~~~~-~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~---- 468 (661)
+++.+++.+.+|++.+|++|.+.+.... ..+ .....|+++........ ......+++.++++.|.+.+++
T Consensus 327 ~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~w-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~~~~~ 401 (573)
T 2iht_A 327 RVYRPDVDVVTDVLAFVEHFETATASFGAKQR-HDIEPLRARIAEFLADP----ETYEDGMRVHQVIDSMNTVMEEAAEP 401 (573)
T ss_dssp TTCCCSEEEESCHHHHHHHHHHHTTTCCCCCC-CCCHHHHHHHHHHHTCC----CCCSSSBCHHHHHHHHHHHHHHHSCT
T ss_pred CCcCCCeeEeCCHHHHHHHHHHhccccCchhH-HHHHHHHHHhhhhhhcc----ccCcCCcCHHHHHHHHHHhcccccCC
Confidence 9999999999999999999998775421 111 22233433322111111 1123358899999999999998
Q ss_pred -CcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCC
Q 048725 469 -EAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKL 547 (661)
Q Consensus 469 -d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~l 547 (661)
+.+++.|+|++.+|..++++..++++|+.++++|+||+++|+|+|++++.|+++||+++|||+|+|+++||+|++++++
T Consensus 402 ~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaa~a~~~~~vv~i~GDG~~~~~~~~L~~a~~~~l 481 (573)
T 2iht_A 402 GEGTIVSDIGFFRHYGVLFARADQPFGFLTSAGCSSFGYGIPAAIGAQMARPDQPTFLIAGDGGFHSNSSDLETIARLNL 481 (573)
T ss_dssp TCCEEEECSSHHHHHHHHHCCCCSTTSEECCSSSCCTTCHHHHHHHHHHHSTTSCEEEEEEHHHHHHTGGGHHHHHHHTC
T ss_pred CCcEEEEcCcHhHHHHHHhcCcCCCCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEccHHHHhHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCcchhHHHHHHHhhcccccc--cccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCc
Q 048725 548 PIKILLLNNQHLGMVMQWEDRFYKANRAH--TYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGP 625 (661)
Q Consensus 548 pv~ivV~NN~g~g~~~~~~~~~~~~~~~~--~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp 625 (661)
|+++||+||++|+|++++|...|... .. ..+++ +||.++|++||+++++|++.+||+++|+++++.+||
T Consensus 482 ~~~ivv~NN~~~~~~~~~~~~~~~~~-~~~~~~~~~--------~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~gp 552 (573)
T 2iht_A 482 PIVTVVVNNDTNGLIELYQNIGHHRS-HDPAVKFGG--------VDFVALAEANGVDATRATNREELLAALRKGAELGRP 552 (573)
T ss_dssp CCEEEEEECSBCHHHHHHHHHHHSSC-CGGGTBCCC--------CCHHHHHHHTTCEEEECCSHHHHHHHHHHHHTSSSC
T ss_pred CeEEEEEECCcchhhHHHHHHhcCCC-cCccccCCC--------CCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhCCCC
Confidence 99999999999999998887766542 22 22322 799999999999999999999999999999999999
Q ss_pred EEEEEEeCC
Q 048725 626 YLLDVIFPH 634 (661)
Q Consensus 626 ~lIeV~~~~ 634 (661)
.||||++++
T Consensus 553 ~liev~~~~ 561 (573)
T 2iht_A 553 FLIEVPVNY 561 (573)
T ss_dssp EEEEEEBCC
T ss_pred EEEEEECCC
Confidence 999999987
No 11
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=100.00 E-value=7e-92 Score=793.43 Aligned_cols=521 Identities=20% Similarity=0.311 Sum_probs=453.7
Q ss_pred CcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 048725 88 RKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLV 167 (661)
Q Consensus 88 ~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l 167 (661)
++++++|++.|+++||++|||+||+++++|+++|. ++|++|.++||++|+|||+||||+||||+||++|+|||++|++
T Consensus 2 ~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~--~~i~~i~~~~E~~Aa~~A~Gyar~tg~~~v~~~tsGpG~~N~~ 79 (528)
T 1q6z_A 2 ASVHGTTYELLRRQGIDTVFGNPGSNALPFLKDFP--EDFRYILALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAM 79 (528)
T ss_dssp CBHHHHHHHHHHHTTCCEEEECCCGGGHHHHTTCC--TTCEEEECSSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTH
T ss_pred CcHHHHHHHHHHHCCCCEEEECCCcchHHHHHHHh--hcCcEEEECcHHHHHHHHHHHHHHhCCCEEEEEcCChHHHHHH
Confidence 58999999999999999999999999999999994 4699999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcEEEEecCCCCcccCCCCCCC-CCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEec
Q 048725 168 SGLADALLDSVPLVAITGQVPRRMIGTDAFQE-TPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVP 246 (661)
Q Consensus 168 ~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~-~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP 246 (661)
+||++|+.+++|||+||||+|...++++++|+ +||.+++++++||++++.+++++++.+++||+.|+++|+|||||+||
T Consensus 80 ~~l~~A~~~~~Pll~itg~~~~~~~~~~~~q~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP 159 (528)
T 1q6z_A 80 GALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVP 159 (528)
T ss_dssp HHHHHHHHTTCCEEEEEEECCHHHHTTTCTTCCTTGGGSSTTSCSCEECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEE
T ss_pred HHHHHHhhcCCCEEEEeCCCcccccCCCcccccccHHHHHHHhhHhhhcCCCHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 99999999999999999999999999999999 69999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCe-eecC
Q 048725 247 KDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPV-ASTL 323 (661)
Q Consensus 247 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV-~tt~ 323 (661)
.|++.++..... ........ .....++++.+++++++|.++|||+|++|+++. ++.+++++|+|++|+|| ++++
T Consensus 160 ~d~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~~~~ 236 (528)
T 1q6z_A 160 YDDWDKDADPQS-HHLFDRHV--SSSVRLNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPS 236 (528)
T ss_dssp GGGTTSBCCGGG-GGGTTCCC--CCCCCCCHHHHHHHHHHHHHCSSCEEEECHHHHHTTCHHHHHHHHHHHTCCEEECSS
T ss_pred hhhhhCcccccc-ccccccCC--CCCCCCCHHHHHHHHHHHhcCCCeEEEECCccchhhHHHHHHHHHHHHCCCEEEecc
Confidence 999865432110 00001100 011235678899999999999999999999975 56899999999999999 7788
Q ss_pred CCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccc-cCCCCeEEEEcCCchhhccCCCCcceE
Q 048725 324 MGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEA-FASRAKIVHIDIDSAEIGKNKQPHVSV 402 (661)
Q Consensus 324 ~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~-~~~~~~vi~Id~d~~~i~~~~~~~~~i 402 (661)
+|||.+|++||+++|++| .++..++++++++|+||++|+++.++.++.|.. +.++.++||||+|+.+++++ .+++.+
T Consensus 237 ~g~g~~~~~~p~~~G~~g-~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~-~~~~~i 314 (528)
T 1q6z_A 237 APRCPFPTRHPCFRGLMP-AGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEAARA-PMGDAI 314 (528)
T ss_dssp CSBCCSCTTSTTEEEECC-SCHHHHHHHHTTCSEEEEESSCTTCCCSCCCSCSSCTTCEEEEEESCHHHHHHC-SSSEEE
T ss_pred CccccCCCCCccccCcCC-CCcHHHHHHHhcCCEEEEECCCCccccccCcCCcCCCCCeEEEEeCCHHHhCCC-CCCeeE
Confidence 999999999999999999 888889999999999999999999888776644 44678999999999999999 999999
Q ss_pred eccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEEEEcCChhHHH
Q 048725 403 CADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMW 482 (661)
Q Consensus 403 ~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~~ 482 (661)
.+|++.+|++|.+.+..... +...|++ . ..........+++.++++.|.+.++++.+++.|+|++..|
T Consensus 315 ~~d~~~~l~~L~~~~~~~~~----~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~ 382 (528)
T 1q6z_A 315 VADIGAMASALANLVEESSR----QLPTAAP-------E-PAKVDQDAGRLHPETVFDTLNDMAPENAIYLNESTSTTAQ 382 (528)
T ss_dssp ESCHHHHHHHHHHHSCCCCS----CCCCCCC-------C-CCCCCCCSSSBCHHHHHHHHHHHSCTTCEEEEECTTSHHH
T ss_pred eCCHHHHHHHHHHHhhcccc----chHHHHh-------h-hhcccccCCCcCHHHHHHHHHhhCCCCeEEEECCcccHHH
Confidence 99999999999987753211 1111211 0 0011112345889999999999999999999999999999
Q ss_pred HHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchhH
Q 048725 483 AAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMV 562 (661)
Q Consensus 483 ~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~ 562 (661)
..++++...+++++++++ |+||+++|+|+|+++++|+++||+++|||+|+|+++||+|++++++|+++||+||++|+|+
T Consensus 383 ~~~~~~~~~~~~~~~~~g-g~~G~~l~~A~G~a~a~~~~~vv~~~GDG~~~~~~~~l~~a~~~~l~~~ivv~nN~~~~~~ 461 (528)
T 1q6z_A 383 MWQRLNMRNPGSYYFCAA-GGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTYGAL 461 (528)
T ss_dssp HHHHCCCCSSSCEEECTT-CCTTSHHHHHHHHHHHCTTSCEEEEEEHHHHTTTGGGHHHHHHHTCCCEEEEEECSBCHHH
T ss_pred HHHhccccCCCcEECCCC-ccccchHHHHHHHHHhCCCCcEEEEECCcHHHhhHHHHHHHHHhCCCeEEEEEeCCcchHh
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCCCC
Q 048725 563 MQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQE 636 (661)
Q Consensus 563 ~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~~~ 636 (661)
+.+|...+... +.++. ...+||.++|++||+++++|++.+||+++|+++++.+||+||||++++++
T Consensus 462 ~~~~~~~~~~~----~~~~~----~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~gp~liev~~~~~~ 527 (528)
T 1q6z_A 462 RWFAGVLEAEN----VPGLD----VPGIDFRALAKGYGVQALKADNLEQLKGSLQEALSAKGPVLIEVSTVSPV 527 (528)
T ss_dssp HHHHHHHTCCS----CCSCB----CCCCCHHHHHHHHTCEEEEESSHHHHHHHHHHHHTCSSCEEEEEEBCC--
T ss_pred HHHHHHhcCCC----cccCC----CCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHHCCCcEEEEEEecCCC
Confidence 88877655322 11211 11379999999999999999999999999999999999999999998764
No 12
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=100.00 E-value=3.3e-92 Score=803.50 Aligned_cols=543 Identities=16% Similarity=0.142 Sum_probs=420.5
Q ss_pred CcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 048725 88 RKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLV 167 (661)
Q Consensus 88 ~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l 167 (661)
++++++|++.|+++||++|||+||+++++|+++|.++++|++|.++||++|+|||+||||+||||+||++|+|||++|++
T Consensus 11 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~aAdGyAr~tG~pgv~~~TsGpG~~N~~ 90 (578)
T 3lq1_A 11 TDYLAAFIEELVQAGVKEAIISPGSRSTPLALMMAEHPILKIYVDVDERSAGFFALGLAKASKRPVVLLCTSGTAAANYF 90 (578)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHCCCEEEEECSSHHHHTTH
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHhCCCceEEEecCcHHHHHHHHHHHHhhCCCEEEEECCchhhhhhh
Confidence 47999999999999999999999999999999999877899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHH-------HHHHHHHHhhcCCCce
Q 048725 168 SGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPR-------IVREAFLLATSGRPGP 240 (661)
Q Consensus 168 ~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~-------~i~~A~~~a~s~~~GP 240 (661)
+||++||.+++|||+||||+|...+|++++|++||.++++++|||++++.+++++++ ++++||+.|.++|+||
T Consensus 91 ~gia~A~~d~vPll~itG~~p~~~~g~~~~Qe~d~~~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GP 170 (578)
T 3lq1_A 91 PAVAEANLSQIPLIVLTADRPHELRNVGAPQAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGP 170 (578)
T ss_dssp HHHHHHHHTTCCEEEEEEECCGGGTTSSCTTCCCCTTTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHhcCCCeEEEeCCCCHHhhcCCCCCCcCHhhHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCc
Confidence 999999999999999999999999999999999999999999999999999998664 8999999999999999
Q ss_pred EEEEeccchhhhccCCC--CC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc-chHHHHHHHHHHh
Q 048725 241 VLIDVPKDIQQQLAVPN--WN--QPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL-NSSEELRKFVELT 315 (661)
Q Consensus 241 V~I~iP~dv~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~-~a~~~l~~lae~l 315 (661)
|||+||.|++..+.... +. .+...+......+..++++.+++++++|.+ |||+|++|+|+. ++.+++++|+|++
T Consensus 171 V~l~iP~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~-~rPvIl~G~g~~~~~~~~l~~lae~~ 249 (578)
T 3lq1_A 171 VHLNFPLREPLVPILEPSPFTATGKKHHHVHIYYTHEVLDDSSIQKMVTECTG-KKGVFVVGPIDKKELEQPMVDLAKKL 249 (578)
T ss_dssp EEEEEECCSCCCCCCSSCCC------------CCEEEEECHHHHHHHHHHTTT-SCEEEEECSCCCTTCHHHHHHHHHHH
T ss_pred EEEECccCCCCCCCcccchhcccCccccccccccCccCCChHHHHHHHHHhcc-CCeEEEECCCCChHHHHHHHHHHHhc
Confidence 99999999754321100 00 000000000000113467889999999999 999999999986 5679999999999
Q ss_pred CCCeeecC-CCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhcc
Q 048725 316 GIPVASTL-MGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGK 394 (661)
Q Consensus 316 g~PV~tt~-~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~ 394 (661)
|+||++++ ++++.+|++||+++|.++......++..+.+||+||.+|+++.+..+..|....++.++||||+|+.++++
T Consensus 250 ~~PV~~t~~~~~~~~~~~hp~~~g~~~~~~~~~~~~~~~~aDlvl~~G~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~ 329 (578)
T 3lq1_A 250 GWPILADPLSGLRSYGALDEVVIDQYDAFLKEAEIIDKLTPEVVIRFGSMPVSKPLKNWLEQLSDIRFYVVDPGAAWKDP 329 (578)
T ss_dssp TCCEEECGGGSTTSBSSCCSSEECCHHHHTTSHHHHHHTCCSEEEEESSCCSCHHHHHHHHHCCSSEEEEECTTCCCCCT
T ss_pred CcEEEEecCCCCCCCCCCCccccccHHHHhcCccccccCCCCEEEEeCCcccchhHHHHHhcCCCCEEEEECCCCCcCCC
Confidence 99999985 57999999999999987654444455568899999999998765433333222356899999999999999
Q ss_pred CCCCcceEeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCC---CcCCCCCCCChHHHHHHHhhhcCCCcE
Q 048725 395 NKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPL---SFKTFEESIPPQYAIQVLDELTNGEAI 471 (661)
Q Consensus 395 ~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~---~~~~~~~~i~~~~~~~~l~~~l~~d~i 471 (661)
++.+++.+++|++.+|++|.+.+.... ....|.+++.+.+..... ........+++.++++.|.+.++++.+
T Consensus 330 ~~~~~~~i~~d~~~~l~~L~~~l~~~~-----~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i 404 (578)
T 3lq1_A 330 IKAVTDMIHCDERFLLDIMQQNMPDDA-----KDAAWLNGWTSYNKVAREIVLAEMANTTILEEGKIVAELRRLLPDKAG 404 (578)
T ss_dssp TCCCSEEECSCHHHHHHHHHHHSCSTT-----CCHHHHHHHHHHHHHHHHHHHHHSCC----CTTHHHHHHHHHSCSEEE
T ss_pred CcCceEEEEeCHHHHHHHHHhhccCCC-----CcHHHHHHHHHHHHHHhHHHHHhhhcCCCCCHHHHHHHHHHhCCCCCe
Confidence 999999999999999999998775321 134565554433221110 001123458899999999999999999
Q ss_pred EEEcCChhHHHHHhhcc-ccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeE
Q 048725 472 ISTGVGQHQMWAAQFYK-YRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIK 550 (661)
Q Consensus 472 v~~d~G~~~~~~~~~~~-~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ 550 (661)
++.+.|....|..+++. ..++.+++.+.|.+++|+++|+|+|+++ ++++||+++|||||+|++|||+|++++++|++
T Consensus 405 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~~g~l~~AiGaa~--~~~~vv~i~GDGsf~~~~~eL~ta~~~~l~~~ 482 (578)
T 3lq1_A 405 LFIGNSMPIRDVDTYFSQIDKKIKMLANRGANGIDGVVSSALGASV--VFQPMFLLIGDLSFYHDMNGLLMAKKYKMNLT 482 (578)
T ss_dssp EEECSSHHHHHHHHHCCCCSSEEEEECCCSSCCSSSHHHHHHHHTT--TSSSEEEEEEHHHHHHTGGGGHHHHHTTCCEE
T ss_pred EEEeCccHHHHHHHhhcccCCCceEEeCCCccccccHHHHHHHHhc--CCCCEEEEEchHHHHhhHHHHHhhccCCCCeE
Confidence 99999987777777774 3556677777776677778999999975 58999999999999999999999999999999
Q ss_pred EEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEE
Q 048725 551 ILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDV 630 (661)
Q Consensus 551 ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV 630 (661)
+||+||++|||++++++..+ .......++++. .+||.++|++||+++++|++.+||+++|+++++.+||+||||
T Consensus 483 ivv~NN~~~g~~~~~~~~~~-~~~~~~~~~~~~-----~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~gp~liev 556 (578)
T 3lq1_A 483 IVIVNNDGGGIFSFLPQANE-PKYFESLFGTST-----ELDFRFAAAFYDADYHEAKSVDELEEAIDKASYHKGLDIIEV 556 (578)
T ss_dssp EEEECCC-------------------------------CCCTHHHHHHTTCEEEECCSHHHHHHHHHHHTTSSSEEEEEE
T ss_pred EEEEECCcCccccccccccc-cchhhhhccCCC-----CCCHHHHHHHcCCceEecCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 99999999999986522110 000112223322 279999999999999999999999999999999999999999
Q ss_pred EeCCCCCcCCcCCC
Q 048725 631 IFPHQEHVLPMIPS 644 (661)
Q Consensus 631 ~~~~~~~~~p~~~~ 644 (661)
++++++++.|+..-
T Consensus 557 ~~~~~~~~~~~~~~ 570 (578)
T 3lq1_A 557 KTNRHENKANHQAL 570 (578)
T ss_dssp C-------------
T ss_pred ECCccccHHHHHhh
Confidence 99999988776543
No 13
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=100.00 E-value=2.1e-91 Score=795.97 Aligned_cols=529 Identities=23% Similarity=0.352 Sum_probs=443.4
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 048725 86 QPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATN 165 (661)
Q Consensus 86 ~~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N 165 (661)
.+++++++|++.|+++||++|||+||+++++|+++|.+. +|++|.++||++|+|||+||||+||||+||++|+|||++|
T Consensus 8 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~-~i~~i~~~~E~~Aa~~A~GyAr~tg~pgv~~~TsGpG~~N 86 (568)
T 2c31_A 8 ELTDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDD-GQRFYSFRHEQHAGYAASIAGYIEGKPGVCLTVSAPGFLN 86 (568)
T ss_dssp CEEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHT-TCEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHH
T ss_pred CcccHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHhC-CCcEEEeCcHHHHHHHHHHHHHHhCCCEEEEEcCCccHHH
Confidence 458999999999999999999999999999999999875 5999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCcEEEEecCCCCcccC--CCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEE
Q 048725 166 LVSGLADALLDSVPLVAITGQVPRRMIG--TDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLI 243 (661)
Q Consensus 166 ~l~gl~~A~~~~iPll~ItG~~p~~~~g--~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I 243 (661)
+++||++|+.+++|||+||||+|....+ ++++|++||.+++++++||++++.+++++++.+++||+.|+++++|||||
T Consensus 87 ~~~~i~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l 166 (568)
T 2c31_A 87 GVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARPHCKASFRINSIKDIPIGIARAVRTAVSGRPGGVYV 166 (568)
T ss_dssp HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTCCCHHHHSGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEE
T ss_pred HHHHHHHHHhcCCCEEEEccCCCccccCCCCCcccccCHHHHHHhhhheeeecCCHHHHHHHHHHHHHHhcCCCCceEEE
Confidence 9999999999999999999999998888 68999999999999999999999999999999999999999999999999
Q ss_pred EeccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeee
Q 048725 244 DVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVAS 321 (661)
Q Consensus 244 ~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~t 321 (661)
+||.|++.++.............+.......++.+.+++++++|.+||||+|++|+++. ++.+++.+|||++|+||++
T Consensus 167 ~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~ 246 (568)
T 2c31_A 167 DLPAKLFGQTISVEEANKLLFKPIDPAPAQIPAEDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEETGIPFLP 246 (568)
T ss_dssp EEETHHHHCEEEHHHHHHHCCCCSCSSCCCCCCHHHHHHHHHHHHTCSSEEEEECHHHHHHTCHHHHHHHHHHHTCCEEE
T ss_pred eCCHHHhhccccccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECcccccccHHHHHHHHHHHhCCCEEe
Confidence 99999976543110000000011100111235678899999999999999999999986 6789999999999999999
Q ss_pred cCCCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcC-CcccccC-CCCeEEEEcCCchhhccCCCCc
Q 048725 322 TLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVT-GKLEAFA-SRAKIVHIDIDSAEIGKNKQPH 399 (661)
Q Consensus 322 t~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t-~~~~~~~-~~~~vi~Id~d~~~i~~~~~~~ 399 (661)
|++|||.+|++||+++|. ..++++++||+||++|++++++.+ +.+..|. ++.++||||+|+.++++++.++
T Consensus 247 t~~~~g~~~~~~p~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~ii~id~d~~~~~~~~~~~ 319 (568)
T 2c31_A 247 MGMAKGLLPDNHPQSAAA-------TRAFALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQANEMDSNQPIA 319 (568)
T ss_dssp CGGGTTSSCTTCTTBCGG-------GHHHHHHHCSEEEEESCCCSGGGGGGCSGGGTTSCCEEEEEESCGGGTTSSSCCS
T ss_pred cccccccCCCCChhhcch-------HHHhhhccCCEEEEECCCCccccccCcccccCCCCCeEEEEeCCHHHhcCCcCCC
Confidence 999999999999999985 246788999999999999987654 3334565 6789999999999999999999
Q ss_pred ceEeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCC----CcCCC--CCCCChHHHHHHHhhhc--CCCcE
Q 048725 400 VSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPL----SFKTF--EESIPPQYAIQVLDELT--NGEAI 471 (661)
Q Consensus 400 ~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~----~~~~~--~~~i~~~~~~~~l~~~l--~~d~i 471 (661)
+.+.+|++.+|++|.+.+.... .....|.+++++..+.... ..... ...+++..+++.|++.+ +++.+
T Consensus 320 ~~i~~d~~~~l~~L~~~l~~~~----~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~i 395 (568)
T 2c31_A 320 APVVGDIKSAVSLLRKALKGAP----KADAEWTGALKAKVDGNKAKLAGKMTAETPSGMMNYSNSLGVVRDFMLANPDIS 395 (568)
T ss_dssp EEEESCHHHHHHHHHHHHTTCC----CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCTTCBCHHHHHHHHHHHHHHCCSSE
T ss_pred ceeeCCHHHHHHHHHHhhhhcC----CCcHHHHHHHHHHHHhhhhhhhhhhcccccCCCcCHHHHHHHHHHHhcCCCCeE
Confidence 9999999999999998875421 1235576655443221100 00011 24588999999999999 88999
Q ss_pred EEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEE
Q 048725 472 ISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKI 551 (661)
Q Consensus 472 v~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~i 551 (661)
++.|.|++..|...++....|++++.++++|+||+++|+|+|++++ |+++||+++|||+|+|+++||+|++++++|+++
T Consensus 396 v~~dg~~~~~~~~~~~~~~~p~~~~~~g~~g~~G~~l~~AiGaala-~~~~vv~i~GDGsf~~~~~el~ta~~~~l~~~i 474 (568)
T 2c31_A 396 LVNEGANALDNTRMIVDMLKPRKRLDSGTWGVMGIGMGYCVAAAAV-TGKPVIAVEGDSAFGFSGMELETICRYNLPVTV 474 (568)
T ss_dssp EEEESSHHHHHHHHHCCCCSTTCEEESTTTTCSSCHHHHHHHHHHH-HCSCEEEEEEHHHHHTTGGGHHHHHHTTCCEEE
T ss_pred EEECChhHHHHHHHHhcccCCCeEEcCCCCccccccHHHHHHHHhC-CCCcEEEEEcchHhhccHHHHHHHHHhCCCeEE
Confidence 9999776666666677888899999999999999999999999999 899999999999999999999999999999999
Q ss_pred EEEeCCcc-hhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEE
Q 048725 552 LLLNNQHL-GMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDV 630 (661)
Q Consensus 552 vV~NN~g~-g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV 630 (661)
||+||++| .+. ..+. +... .... ....+||.++|++||+++++|++.+||+++|+++++.+||.||||
T Consensus 475 vv~NN~~~~~~~-~~~~--~~~~-~~~~-------~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~p~liev 543 (568)
T 2c31_A 475 IIMNNGGIYKGN-EADP--QPGV-ISCT-------RLTRGRYDMMMEAFGGKGYVANTPAELKAALEEAVASGKPCLINA 543 (568)
T ss_dssp EEEESSBSSCSC-CCCS--BTTB-CCTT-------BCCCCCHHHHHHTTTCEEEEESSHHHHHHHHHHHHHHTSCEEEEE
T ss_pred EEEeCchhHHHH-HHHh--hcCC-cccC-------cCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 99999985 432 1110 1100 0000 012379999999999999999999999999999998899999999
Q ss_pred EeCCCCCc
Q 048725 631 IFPHQEHV 638 (661)
Q Consensus 631 ~~~~~~~~ 638 (661)
++++.++.
T Consensus 544 ~~~~~~~~ 551 (568)
T 2c31_A 544 MIDPDAGV 551 (568)
T ss_dssp EBCTTSSC
T ss_pred EeccccCC
Confidence 99988753
No 14
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=100.00 E-value=4.1e-91 Score=793.21 Aligned_cols=529 Identities=23% Similarity=0.365 Sum_probs=440.9
Q ss_pred CcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 048725 88 RKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLV 167 (661)
Q Consensus 88 ~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l 167 (661)
|+++++|++.|+++||++|||+||+++++|+++|.+. +|++|.++||++|+|||+||||+||||+||++|+|||++|++
T Consensus 8 ~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~-~i~~i~~~hE~~Aa~~A~Gyar~tg~pgv~~~TsGpG~~N~~ 86 (564)
T 2q28_A 8 TDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAE-GIRYIGFRHEQSAGYAAAASGFLTQKPGICLTVSAPGFLNGL 86 (564)
T ss_dssp EEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHT-TCEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHHH
T ss_pred CcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhC-CCcEEeeCCHHHHHHHHHHHHHHhCCCEEEEEccCchHHHHH
Confidence 6899999999999999999999999999999999874 699999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcEEEEecCCCCcccC--CCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEe
Q 048725 168 SGLADALLDSVPLVAITGQVPRRMIG--TDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDV 245 (661)
Q Consensus 168 ~gl~~A~~~~iPll~ItG~~p~~~~g--~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~i 245 (661)
+||++|+.+++|||+||||+|....+ ++++|++||.+++++++||++++.+++++++.+++||+.|.++++|||||+|
T Consensus 87 ~gi~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~i 166 (564)
T 2q28_A 87 TALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPGGVYLDL 166 (564)
T ss_dssp HHHHHHHHHTCCEEEEEEECCHHHHHTTSCCTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEE
T ss_pred HHHHHHHhcCCCEEEEeCCCCccccCCCCCccccccHHHHHHHhhheeeecCCHHHHHHHHHHHHHHHhcCCCceEEEEc
Confidence 99999999999999999999998877 6899999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeec
Q 048725 246 PKDIQQQLAVPN-WNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVAST 322 (661)
Q Consensus 246 P~dv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt 322 (661)
|.|++.++.... ...+. .+.+.......++.+.+++++++|.+||||+|++|+++. ++.+++.+|||++|+||++|
T Consensus 167 P~dv~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t 245 (564)
T 2q28_A 167 PANVLAATMEKDEALTTI-VKVENPSPALLPCPKSVTSAISLLAKAERPLIILGKGAAYSQADEQLREFIESAQIPFLPM 245 (564)
T ss_dssp EHHHHHCEEEHHHHHHTC-CCCSCSSCCEEECHHHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEC
T ss_pred CHHHhhcccccccccccc-ccccCCCCCCCCCHHHHHHHHHHHHcCCCcEEEECcccccccHHHHHHHHHHHhCCCEEec
Confidence 999986543110 00000 001100011134678899999999999999999999986 67899999999999999999
Q ss_pred CCCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCCCcceE
Q 048725 323 LMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSV 402 (661)
Q Consensus 323 ~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 402 (661)
++|||.+|++||+++|. ..++++++||+||++|++++++.+.....|.++.++||||+|+.++++++.+++.+
T Consensus 246 ~~~~g~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i 318 (564)
T 2q28_A 246 SMAKGILEDTHPLSAAA-------ARSFALANADVVMLVGARLNWLLAHGKKGWAADTQFIQLDIEPQEIDSNRPIAVPV 318 (564)
T ss_dssp GGGTTSSCTTCTTBCGG-------GHHHHHHHCSEEEEESCCCSGGGGGGTTTSCTTCEEEEEESCGGGTTSSSCCSEEE
T ss_pred cCccccCCCCChhhcCh-------HHHhHhhcCCEEEEECCcccccccccccccCCCCeEEEEeCCHHHhcCCCCCCeEE
Confidence 99999999999999985 24678899999999999997654322245666789999999999999999999999
Q ss_pred eccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCC----CCcCCCCCCCChHHHHHHHhhhc--CCCcEEEEcC
Q 048725 403 CADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYP----LSFKTFEESIPPQYAIQVLDELT--NGEAIISTGV 476 (661)
Q Consensus 403 ~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~----~~~~~~~~~i~~~~~~~~l~~~l--~~d~iv~~d~ 476 (661)
.+|++.+|++|.+.+..... .....|.+++++.++... ........++++.++++.|++.+ +++.+++.|.
T Consensus 319 ~~d~~~~l~~L~~~l~~~~~---~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~ivv~dg 395 (564)
T 2q28_A 319 VGDIASSMQGMLAELKQNTF---TTPLVWRDILNIHKQQNAQKMHEKLSTDTQPLNYFNALSAVRDVLRENQDIYLVNEG 395 (564)
T ss_dssp ESCHHHHHHHHHHHHHHSCC---CCCHHHHHHHHHHHHHHHHHHHHHHTCCCSSBCHHHHHHHHHHHHTTCTTCEEEEES
T ss_pred EcCHHHHHHHHHHHhhhcCc---CCcHHHHHHHHHHHHhhhhhhhhhhccCCCCcCHHHHHHHHHHHhcCCCCEEEEECC
Confidence 99999999999987753211 123567665544332110 00011234588999999999999 8899999896
Q ss_pred ChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeC
Q 048725 477 GQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNN 556 (661)
Q Consensus 477 G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN 556 (661)
|+...|...++....|++++.++++|+||+++|+|+|++++ |+++||+++|||+|+|+++||+|++++++|+++||+||
T Consensus 396 ~~~~~~~~~~~~~~~p~~~~~~g~~g~~G~~l~~AiGaa~a-~~~~vv~i~GDGsf~~~~~el~ta~~~~l~~~ivv~NN 474 (564)
T 2q28_A 396 ANTLDNARNIIDMYKPRRRLDCGTWGVMGIGMGYAIGASVT-SGSPVVAIEGDSAFGFSGMEIETICRYNLPVTIVIFNN 474 (564)
T ss_dssp SHHHHHHHHHSCCCSSSCEEESTTTTCTTCHHHHHHHHHHH-HCSCEEEEEEHHHHHTTGGGHHHHHHTTCCEEEEEEEC
T ss_pred chHHHHHHHHhcccCCCeEecCCCCCcccchHHHHHHHhhc-CCCcEEEEEcchHhhccHHHHHHHHHhCCCeEEEEEeC
Confidence 66555555567888899999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred Ccc-hhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCCC
Q 048725 557 QHL-GMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQ 635 (661)
Q Consensus 557 ~g~-g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~~ 635 (661)
++| ++..+ + ..+........ ....+||.++|++||+++++|++.+||+++|+++++.+||.||||++++.
T Consensus 475 ~~~~~~~~~-~-~~~~~~~~~~~-------~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~p~liev~~~~~ 545 (564)
T 2q28_A 475 GGIYRGDGV-D-LSGAGAPSPTD-------LLHHARYDKLMDAFRGVGYNVTTTDELRHALTTGIQSRKPTIINVVIDPA 545 (564)
T ss_dssp SBSSCSCCC-C-TTSSCCCCTTB-------CCTTCCGGGGGGGGTCEEEEECSHHHHHHHHHHHHHHTSCEEEEEEBCTT
T ss_pred chhHHHHHH-H-HhccCCccccc-------cCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeccc
Confidence 995 55311 0 01111000000 01137999999999999999999999999999999889999999999988
Q ss_pred CCc
Q 048725 636 EHV 638 (661)
Q Consensus 636 ~~~ 638 (661)
++.
T Consensus 546 ~~~ 548 (564)
T 2q28_A 546 AGT 548 (564)
T ss_dssp SSC
T ss_pred cCC
Confidence 754
No 15
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=100.00 E-value=1.5e-91 Score=802.12 Aligned_cols=532 Identities=16% Similarity=0.162 Sum_probs=444.7
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNL 166 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~ 166 (661)
.++++++|++.|+++||++|||+||+++++|+++|.++++|++|.++||++|+|||+||||+||||+||++|+|||++|+
T Consensus 30 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~aA~GyAr~tgkpgv~~~TsGpG~~N~ 109 (604)
T 2x7j_A 30 ITHYIGSFIDEFALSGITDAVVCPGSRSTPLAVLCAAHPDISVHVQIDERSAGFFALGLAKAKQRPVLLICTSGTAAANF 109 (604)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEECCCSTTHHHHHHHHHCTTCEEEECSSHHHHHHHHHHHHHHHTSCEEEEECSSHHHHTT
T ss_pred hHHHHHHHHHHHHHcCCCEEEECcCcccHHHHHHHHhCCCceEEEecChHHHHHHHHHHHHhhCCCEEEEECChhHHHHH
Confidence 46899999999999999999999999999999999887679999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCc-------HHHHHHHHHHHhhcCCCc
Q 048725 167 VSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDD-------IPRIVREAFLLATSGRPG 239 (661)
Q Consensus 167 l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~-------i~~~i~~A~~~a~s~~~G 239 (661)
++||++|+.+++|||+||||+|...++++++|++||.+++++++||++++.++++ +++.+++||+.|.++|+|
T Consensus 110 ~~gia~A~~~~vPlv~ItG~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~G 189 (604)
T 2x7j_A 110 YPAVVEAHYSRVPIIVLTADRPHELREVGAPQAINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMG 189 (604)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCGGGSSSCCTTCCCCTTTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHhhcCCCEEEEeCCCCHHHhCCCCCCcCcHHHHhhhheeeeeecCCCcccchhHHHHHHHHHHHHHHhhCCCCC
Confidence 9999999999999999999999999999999999999999999999999999998 999999999999999999
Q ss_pred eEEEEeccchhhhccCCCCCCC----CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc-chHHHHHHHHHH
Q 048725 240 PVLIDVPKDIQQQLAVPNWNQP----IKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL-NSSEELRKFVEL 314 (661)
Q Consensus 240 PV~I~iP~dv~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~-~a~~~l~~lae~ 314 (661)
||||+||.|++..........+ .....+.. .+..++.+.+++++++|.+||||+|++|+++. ++.+++++|||+
T Consensus 190 PV~l~iP~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~l~~A~rPvIl~G~g~~~~a~~~l~~lae~ 268 (604)
T 2x7j_A 190 PVHVNVPLREPLMPDLSDEPFGRMRTGRHVSVKT-GTQSVDRESLSDVAEMLAEAEKGMIVCGELHSDADKENIIALSKA 268 (604)
T ss_dssp EEEEEEECCSCCCCCTTSCTTCCSSSSCSSEEEC-CEEECCTGGGHHHHHHHHHCSSEEEEECCCCCHHHHHHHHHHHHH
T ss_pred cEEEEcccCccCCCcccccccccccccccccccc-cCccCChhhHHHHHHHHhhcCCeEEEECCCCcHHHHHHHHHHHHh
Confidence 9999999998654321100000 01111100 01123557799999999999999999999985 456899999999
Q ss_pred hCCCeeecCCCCCCC-CCCCCCCCcccC-CCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhh
Q 048725 315 TGIPVASTLMGLGSF-PGTDELSLQMLG-MHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEI 392 (661)
Q Consensus 315 lg~PV~tt~~gkg~~-p~~hpl~lg~~G-~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i 392 (661)
+|+||++|+++++.+ |++||+++|.+| ..++..++++++ +|+||+||+++.++.+..|....++.++||||+|+.++
T Consensus 269 ~~~PV~~t~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~-~Dlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~ 347 (604)
T 2x7j_A 269 LQYPILADPLSNLRNGVHDKSTVIDAYDSFLKDDELKRKLR-PDVVIRFGPMPVSKPVFLWLKDDPTIQQIVIDEDGGWR 347 (604)
T ss_dssp HTCCEEECGGGTTTBSSSCCTTEECCHHHHTTSHHHHHHHC-CSEEEEESSCCSCHHHHHHHHHCTTSEEEEECTTCCCC
T ss_pred cCceEEEcccccccccCCCCcceechHHHHhcCchhhhhcC-CCEEEEECCcCccHHHHHHHhhCCCCeEEEECCCCCcc
Confidence 999999999877655 888999999865 566777777776 89999999999766443332222267899999999999
Q ss_pred ccCCCCcceEeccHHHHHHHHHHHhc-CCCCCCCCCcHHHHHHHHHHHhhCCC--CcCCCCCCCChHHHHHHHhhhcCCC
Q 048725 393 GKNKQPHVSVCADLKLALKGINRILG-GKDAEGRFDFSAWREELDEQKVKYPL--SFKTFEESIPPQYAIQVLDELTNGE 469 (661)
Q Consensus 393 ~~~~~~~~~i~~D~~~~L~~L~~~l~-~~~~~~~~~~~~w~~~l~~~~~~~~~--~~~~~~~~i~~~~~~~~l~~~l~~d 469 (661)
++++.+++.+.+|++.+|++|.+.+. .. ....|.+++.+.+..... ........+++.++++.|.+.++++
T Consensus 348 ~~~~~~~~~i~~d~~~~l~~L~~~l~~~~------~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~lp~d 421 (604)
T 2x7j_A 348 DPTQASAHMIHCNASVFAEEIMAGLTAAT------RSSEWLEKWQFVNGRFREHLQTISSEDVSFEGNLYRILQHLVPEN 421 (604)
T ss_dssp CTTSCCSEEECSCHHHHHHHHHHTSCSSC------CCCHHHHHHHHHHHHHHHHHHTSCCCCTTSHHHHHHHHHHHSCTT
T ss_pred CCCccceEEEEcCHHHHHHHHHHhhcCCC------CcHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhCCCC
Confidence 99999999999999999999988764 21 112455433322211000 0001134689999999999999999
Q ss_pred cEEEEcCChhHHHHHhhccccC-CCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCC
Q 048725 470 AIISTGVGQHQMWAAQFYKYRR-PRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLP 548 (661)
Q Consensus 470 ~iv~~d~G~~~~~~~~~~~~~~-p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lp 548 (661)
.+++.|+|++..|..+++.... +.++++++++++||+++|+|+|+++| ++++||+++|||+|+|+++||+|++++++|
T Consensus 422 ~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~~G~~~ig~~l~~AiGaala-~~~~vv~i~GDGsf~~~~~eL~ta~~~~lp 500 (604)
T 2x7j_A 422 SSLFVGNSMPIRDVDTFFEKQDRPFRIYSNRGANGIDGVVSSAMGVCEG-TKAPVTLVIGDLSFYHDLNGLLAAKKLGIP 500 (604)
T ss_dssp CEEEECTTHHHHHHHHHCCCBSCCCEEECCTTTCCSSSHHHHHHHHHHH-HTSCEEEEEEHHHHHHTGGGGHHHHHHCCC
T ss_pred CEEEEECCHHHHHHHHhcccCCCCceEEeCCCcCCcCcHHHHHHHHHhc-CCCcEEEEEccHHHHhHHHHHHHhhhcCCC
Confidence 9999999999899888887765 89999999999999999999999999 589999999999999999999999999999
Q ss_pred eEEEEEeCCcchhHHHHHH----HhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCC
Q 048725 549 IKILLLNNQHLGMVMQWED----RFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPG 624 (661)
Q Consensus 549 v~ivV~NN~g~g~~~~~~~----~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~g 624 (661)
+++||+||++|+|+++++. ..++ .+++++. .+||.++|++||+++++|++.+||+++|+++++.+|
T Consensus 501 ~~ivv~NN~~~~i~~~~~~~q~~~~~~-----~~~~~~~-----~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~g 570 (604)
T 2x7j_A 501 LTVILVNNDGGGIFSFLPQASEKTHFE-----DLFGTPT-----GLDFKHAAALYGGTYSCPASWDEFKTAYAPQADKPG 570 (604)
T ss_dssp EEEEEEECSSCGGGGGSGGGSCHHHHH-----HHTTCCC-----CCCTHHHHHHTTCEEECCSSHHHHHHHCCCCCSSCC
T ss_pred eEEEEEeCCCCcccccCCCCccchhhH-----hhccCCC-----CCCHHHHHHHcCCeEEecCCHHHHHHHHHHHHhCCC
Confidence 9999999999999754321 1221 1222222 279999999999999999999999999999998899
Q ss_pred cEEEEEEeCCCCC
Q 048725 625 PYLLDVIFPHQEH 637 (661)
Q Consensus 625 p~lIeV~~~~~~~ 637 (661)
|+||||++++.+.
T Consensus 571 p~liev~~~~~~~ 583 (604)
T 2x7j_A 571 LHLIEIKTDRQSR 583 (604)
T ss_dssp EEEEEEECCHHHH
T ss_pred CEEEEEECCcccc
Confidence 9999999997664
No 16
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=100.00 E-value=4.9e-89 Score=776.49 Aligned_cols=522 Identities=20% Similarity=0.253 Sum_probs=442.1
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNL 166 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~ 166 (661)
+|+++++|++.|+++||++|||+||+++++|+++|.++++|++|.++||++|+|||+||||+|| |+||++|+|||++|+
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~ 80 (568)
T 2wvg_A 2 SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKG-AAAAVVTYSVGALSA 80 (568)
T ss_dssp CEEHHHHHHHHHHHTTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHH
T ss_pred CcCHHHHHHHHHHHcCCCEEEeCCCCccHHHHHHHhccCCceEeccCcHHHHHHHHHHHHHhhC-CeEEEEeCCCCHHHH
Confidence 4789999999999999999999999999999999998767999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCCcccCCCCC--------CCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCC
Q 048725 167 VSGLADALLDSVPLVAITGQVPRRMIGTDAF--------QETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRP 238 (661)
Q Consensus 167 l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~--------q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~ 238 (661)
++||++|+.+++|||+||||+|....+++.+ |..||.++++++|||++++.+++++++.+++||+.|.+++
T Consensus 81 ~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~- 159 (568)
T 2wvg_A 81 FDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREK- 159 (568)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHHTTSCSCEEEECSGGGHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccchHHHHHHHHhhEeEEEEeCCHHHHHHHHHHHHHHHHhCC-
Confidence 9999999999999999999999988766531 2237999999999999999999999999999999999987
Q ss_pred ceEEEEeccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhC
Q 048725 239 GPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTG 316 (661)
Q Consensus 239 GPV~I~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg 316 (661)
|||||+||.|++.++..... ..............++.+.+++++++|.++|||+|++|+++. ++.+++.+|+|++|
T Consensus 160 GPV~l~iP~dv~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~ 237 (568)
T 2wvg_A 160 KPVYLEIACNIASMPCAAPG--PASALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALG 237 (568)
T ss_dssp CCEEEEEEGGGTTSEECEEC--CTHHHHCCCCCCHHHHHHHHHHHHHHHTTCCCEEEEECTTTTTTTCHHHHHHHHHHHC
T ss_pred CCEEEEechhHhcCcccCCC--cccccccCCCCCccccHHHHHHHHHHHHhCCCCEEEECccccccchHHHHHHHHHHhC
Confidence 99999999999865432110 000000000000012346799999999999999999999986 57899999999999
Q ss_pred CCeeecCCCCCCCCCCCCCCCcc-cCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccC
Q 048725 317 IPVASTLMGLGSFPGTDELSLQM-LGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKN 395 (661)
Q Consensus 317 ~PV~tt~~gkg~~p~~hpl~lg~-~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~ 395 (661)
+||++|++|||.||++||+++|+ .|..++..++++++++|+||++|++++++.++.|..+.++.++||||+|+.+++++
T Consensus 238 ~Pv~~t~~~kg~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~ 317 (568)
T 2wvg_A 238 GAVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGI 317 (568)
T ss_dssp CEEEEEGGGTTSSCTTSTTEEEEECGGGSCTTHHHHHHHCSEEEEESCCCBTTTTTTTTCCCCTTTEEEECSSEEEETTE
T ss_pred CCEEEchhcCccCCCCCCceeccccCCcCCHHHHHHHHhCCEEEEECCCcccccccccccCCCCCcEEEEeCChhhcCCe
Confidence 99999999999999999999998 58888888899999999999999999988887776666678999999999999876
Q ss_pred CCCcceEeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHh-hCCC-CcCCCCCCCChHHHHHHHhhhcCCCcEEE
Q 048725 396 KQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKV-KYPL-SFKTFEESIPPQYAIQVLDELTNGEAIIS 473 (661)
Q Consensus 396 ~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~-~~~~-~~~~~~~~i~~~~~~~~l~~~l~~d~iv~ 473 (661)
+..++ +++.+|++|.+.+... ...|.+ +.+..+ .... ........+++.++++.|.+.++++.+++
T Consensus 318 ~~~~~----~~~~~l~~L~~~l~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~ 385 (568)
T 2wvg_A 318 RFPSV----HLKDYLTRLAQKVSKK-------TGALDF-FKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTPNTTVI 385 (568)
T ss_dssp EEESC----CHHHHHHHHHHHCCCC-------CHHHHH-HHHTTCCSCCCCCCCCTTSBCCHHHHHHHHHTTCCTTEEEE
T ss_pred ecCCC----CHHHHHHHHHHhcccc-------ccchhh-hhhhhhhcccccccCCCCCccCHHHHHHHHHHhCCCCCEEE
Confidence 55444 5799999998876431 134532 222221 1111 11112345889999999999999999999
Q ss_pred EcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEE
Q 048725 474 TGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILL 553 (661)
Q Consensus 474 ~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV 553 (661)
.|+|++. |..++++..+++++++++++|+||+++|+|+|+++|+|+++||+++|||+|+|+++||+|++++++|+++||
T Consensus 386 ~d~G~~~-~~~~~~~~~~~~~~~~~~~~g~~G~~l~~A~G~ala~~~~~vv~i~GDGs~~~~~~el~ta~~~~l~~~ivv 464 (568)
T 2wvg_A 386 AETGDSW-FNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFL 464 (568)
T ss_dssp ECSSHHH-HHHHTCCCCTTCEEECCTTTCCTTTHHHHHHHHHHHCTTSEEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEE
T ss_pred EcCcHHH-HHHhhcccCCCCeEEeCCCcchhhhHHHHHHHHHHhCCCCcEEEEEcChhHhccHHHHHHHHHcCCCcEEEE
Confidence 9999885 788899888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCC---------CEeeeCCHHHHHHHHHHHHhC-C
Q 048725 554 LNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGI---------PGAQVTRKADLRAAIQTMLDT-P 623 (661)
Q Consensus 554 ~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~---------~~~~v~~~~el~~al~~a~~~-~ 623 (661)
+||++|+|+++++...| .+.. .+||.++|++||+ ++++|++.+||+++|+++++. +
T Consensus 465 ~NN~~~~~~~~~~~~~~---------~~~~-----~~d~~~~a~a~G~~~~~~~~~~~~~~v~~~~el~~al~~a~~~~~ 530 (568)
T 2wvg_A 465 INNYGYTIEVMIHDGPY---------NNIK-----NWDYAGLMEVFNGNGGYDSGAGKGLKAKTGGELAEAIKVALANTD 530 (568)
T ss_dssp EECSSCHHHHTTSCCGG---------GCCC-----CCCHHHHHHHHHCTTSSSCCCCEEEEESBHHHHHHHHHHHHHCCS
T ss_pred EECCcceEeeeeccCCC---------cCCC-----CCCHHHHHHHhCCCcccccCCcceEEeCCHHHHHHHHHHHHhcCC
Confidence 99999999875442111 1111 2799999999999 899999999999999999987 9
Q ss_pred CcEEEEEEeCCCCCcC
Q 048725 624 GPYLLDVIFPHQEHVL 639 (661)
Q Consensus 624 gp~lIeV~~~~~~~~~ 639 (661)
||.||||++++++...
T Consensus 531 gp~liev~~~~~~~~~ 546 (568)
T 2wvg_A 531 GPTLIECFIGREDCTE 546 (568)
T ss_dssp SCEEEEEECCTTCCCH
T ss_pred CcEEEEEEcCccccCH
Confidence 9999999999887543
No 17
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=100.00 E-value=8.6e-89 Score=774.19 Aligned_cols=520 Identities=20% Similarity=0.255 Sum_probs=441.3
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNL 166 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~ 166 (661)
+|+++++|++.|+++||++|||+||+++++|+++|.++++|++|.++||++|+|||+||||+|| |+||++|+|||++|+
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~v~~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~ 80 (566)
T 2vbi_A 2 TYTVGMYLAERLVQIGLKHHFAVAGDYNLVLLDQLLLNKDMKQIYCCNELNCGFSAEGYARSNG-AAAAVVTFSVGAISA 80 (566)
T ss_dssp CCBHHHHHHHHHHHHTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHH
T ss_pred ccCHHHHHHHHHHHcCCCEEEeCCCCccHHHHHHHhcCCCCeEEeeCcHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHH
Confidence 4789999999999999999999999999999999998767999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCCcccCCCCC--------CCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCC
Q 048725 167 VSGLADALLDSVPLVAITGQVPRRMIGTDAF--------QETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRP 238 (661)
Q Consensus 167 l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~--------q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~ 238 (661)
++||++|+.+++|||+||||+|....+++.+ |..||.+++++++||++++.+++++++.+++||+.|.+++
T Consensus 81 ~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~- 159 (566)
T 2vbi_A 81 MNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEMARQVTCAAESITDAHSAPAKIDHVIRTALRER- 159 (566)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCcchHHHHHHHhhhEeEEEEeCCHHHHHHHHHHHHHHHHhCC-
Confidence 9999999999999999999999988776532 2237899999999999999999999999999999999987
Q ss_pred ceEEEEeccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhC
Q 048725 239 GPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTG 316 (661)
Q Consensus 239 GPV~I~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg 316 (661)
|||||+||.|++.++.......+... ........+..+.+++++++|.++|||+|++|+++. ++.+++++|+|++|
T Consensus 160 GPV~l~iP~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~ 237 (566)
T 2vbi_A 160 KPAYLDIACNIASEPCVRPGPVSSLL--SEPEIDHTSLKAAVDATVALLEKSASPVMLLGSKLRAANALAATETLADKLQ 237 (566)
T ss_dssp CCEEEEEETTTTTSBCCEECCCSCSC--CCBCCCHHHHHHHHHHHHHHHHTCSCEEEEECTTTTTTTCHHHHHHHHHHHC
T ss_pred CCEEEEechhhcCCeecCCCCCcccC--CCCCCCcchHHHHHHHHHHHHHhCCCCEEEECcCccccchHHHHHHHHHHhC
Confidence 99999999999866432110011100 000000012346789999999999999999999986 57899999999999
Q ss_pred CCeeecCCCCCCCCCCCCCCCcc-cCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccC
Q 048725 317 IPVASTLMGLGSFPGTDELSLQM-LGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKN 395 (661)
Q Consensus 317 ~PV~tt~~gkg~~p~~hpl~lg~-~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~ 395 (661)
+||++|++|||.+|++||+++|+ .|..++..++++++++|+||++|+++.++.++.|..+.++.++||||+|+.+++++
T Consensus 238 ~Pv~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~ 317 (566)
T 2vbi_A 238 CAVTIMAAAKGFFPEDHAGFRGLYWGEVSNPGVQELVETSDALLCIAPVFNDYSTVGWSAWPKGPNVILAEPDRVTVDGR 317 (566)
T ss_dssp CEEEEEGGGTTSSCTTSTTEEEEECGGGSCTTHHHHHHTCSEEEEESCCCBTTTTTTTTSCCCSTTEEEECSSEEEETTE
T ss_pred CCEEEccccCccCCCCCccccccccCccCCHHHHHHHHhCCEEEEECCCccccccccccccCCCCcEEEEeCChheeCCc
Confidence 99999999999999999999998 48888888999999999999999999998887776666778999999999999986
Q ss_pred CCCcceEeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEEEEc
Q 048725 396 KQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTG 475 (661)
Q Consensus 396 ~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d 475 (661)
+..++ +++.+|++|.+.+... ...|.+ +.+...... .. .....+++.++++.|.+.++++.+++.|
T Consensus 318 ~~~~~----~~~~~l~~L~~~l~~~-------~~~~~~-~~~~~~~~~-~~-~~~~~l~~~~~~~~l~~~l~~~~iv~~d 383 (566)
T 2vbi_A 318 AYDGF----TLRAFLQALAEKAPAR-------PASAQK-SSVPTCSLT-AT-SDEAGLTNDEIVRHINALLTSNTTLVAE 383 (566)
T ss_dssp EEESS----CHHHHHHHHHHHCCCC-------CHHHHT-SCCCCCCCC-CC-CTTSCCCHHHHHHHHHHHCCTTEEEEEC
T ss_pred ccCCc----cHHHHHHHHHHhcccc-------ccchhh-hhhhhhccC-CC-CCCCccCHHHHHHHHHHhcCCCCEEEEC
Confidence 65554 4789999998876431 134521 111111111 11 1234588999999999999999999999
Q ss_pred CChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEe
Q 048725 476 VGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLN 555 (661)
Q Consensus 476 ~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~N 555 (661)
+|++. |..++++..+++++++++++|+||+++|+|+|+++|+|+++||+++|||+|+|+++||+|++++++|+++||+|
T Consensus 384 ~G~~~-~~~~~~~~~~~~~~~~~~~~g~mG~~l~~A~G~ala~~~~~vv~~~GDG~~~~~~~eL~ta~~~~l~~~ivv~n 462 (566)
T 2vbi_A 384 TGDSW-FNAMRMTLPRGARVELEMQWGHIGWSVPSAFGNAMGSQDRQHVVMVGDGSFQLTAQEVAQMVRYELPVIIFLIN 462 (566)
T ss_dssp SSHHH-HHHHTCCCCTTCEEECCTTTCCTTTHHHHHHHHHHTCTTSEEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEEE
T ss_pred CchHH-HhhhheECCCCCEEEecCcccchhhHHHHHHHHHHhCCCCcEEEEEcchHHHhhHHHHHHHHHhCCCcEEEEEE
Confidence 99885 88889988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCC-----CEeeeCCHHHHHHHHHHHHhC-CCcEEEE
Q 048725 556 NQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGI-----PGAQVTRKADLRAAIQTMLDT-PGPYLLD 629 (661)
Q Consensus 556 N~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~-----~~~~v~~~~el~~al~~a~~~-~gp~lIe 629 (661)
|++|+|++.++...| .+. ..+||.++|++||+ ++++|++.+||+++|+++++. +||.|||
T Consensus 463 N~~~~~~~~~~~~~~---------~~~-----~~~d~~~~a~a~G~~~~~~~~~~v~~~~el~~al~~a~~~~~gp~lie 528 (566)
T 2vbi_A 463 NRGYVIEIAIHDGPY---------NYI-----KNWDYAGLMEVFNAGEGHGLGLKATTPKELTEAIARAKANTRGPTLIE 528 (566)
T ss_dssp CSSCHHHHTTSCCGG---------GCC-----CCCCTTTHHHHHHTTTCCCEEEEECSHHHHHHHHHHHHHCCSSCEEEE
T ss_pred CCcceEEEeeccCCc---------cCC-----CCCCHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHHHHhcCCCcEEEE
Confidence 999999865442111 111 12799999999999 999999999999999999987 9999999
Q ss_pred EEeCCCCCcC
Q 048725 630 VIFPHQEHVL 639 (661)
Q Consensus 630 V~~~~~~~~~ 639 (661)
|++++++...
T Consensus 529 v~~~~~~~~~ 538 (566)
T 2vbi_A 529 CQIDRTDCTD 538 (566)
T ss_dssp EECCTTCCCH
T ss_pred EEeCcccCcH
Confidence 9999887543
No 18
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=100.00 E-value=2.8e-89 Score=775.96 Aligned_cols=521 Identities=16% Similarity=0.168 Sum_probs=406.2
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNL 166 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~ 166 (661)
.++++|+|++.|+++||++|||+||+++++|+++|.++++|++|.++||++|+|||+||||+||||+||++|+|||++|+
T Consensus 7 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~~AdGyAr~tG~pgv~~~TsGpG~~N~ 86 (556)
T 3hww_A 7 NRRWAAVILEALTRHGVRHICIAPGSRSTLLTLAAAENSAFIHHTHFDERGLGHLALGLAKVSKQPVAVIVTSGTAVANL 86 (556)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEECCCTTSHHHHHHHHHCTTCEEEECSCHHHHHHHHHHHHHHHCSCEEEEECSSHHHHTT
T ss_pred hhHHHHHHHHHHHHCCCCEEEEcCCCCcHHHHHHHhhCCCceEEEecCCcHHHHHHHHHHHhhCCCEEEEECCCcHHHhh
Confidence 36899999999999999999999999999999999887789999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCc------HHHHHHHHHHHhhcCCCce
Q 048725 167 VSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDD------IPRIVREAFLLATSGRPGP 240 (661)
Q Consensus 167 l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~------i~~~i~~A~~~a~s~~~GP 240 (661)
++||++||.+++|||+||||+|...+|++++|++||.++++++|||++++.++++ +++++++|| .++|+||
T Consensus 87 ~~gia~A~~d~vPll~itG~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~---~~~r~GP 163 (556)
T 3hww_A 87 YPALIEAGLTGEKLILLTADRPPELIDCGANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHAL---GTLHAGG 163 (556)
T ss_dssp HHHHHHHHHHCCCEEEEEEECCGGGSSSSCTTCCCCTTTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHH---HSCCSSC
T ss_pred hHHHHHHHHhCCCeEEEeCCCCHHHhccCCCccccHHHHHhhheeEEEecCCCcccccHHHHHHHHHHHH---hcCCCCC
Confidence 9999999999999999999999999999999999999999999999999998875 899999998 3589999
Q ss_pred EEEEeccchhhh-ccCCC---CCCCCC--CCCCCCCCCCCCCHHHH-HHHHHHHHhCCCcEEEEcCCccchHHHHHHHHH
Q 048725 241 VLIDVPKDIQQQ-LAVPN---WNQPIK--LPGYMSRLPKEPSEVHL-EQIVRLISESKKPVLYVGGGCLNSSEELRKFVE 313 (661)
Q Consensus 241 V~I~iP~dv~~~-~~~~~---~~~~~~--~~~~~~~~~~~~~~~~l-~~~~~~L~~AkrPvIv~G~g~~~a~~~l~~lae 313 (661)
|||+||.|++.. ..... +..+.. .+...+..+ .+..+.+ ++++++|.+||||+|++|++..++.+++++|+|
T Consensus 164 V~i~iP~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~A~rPvIl~G~~~~~a~~~l~~lae 242 (556)
T 3hww_A 164 VHINCPFAEPLYGEMDDTGLSWQQRLGDWWQDDKPWLR-EAPRLESEKQRDWFFWRQKRGVVVAGRMSAEEGKKVALWAQ 242 (556)
T ss_dssp EEEEEECCSCCSCCCSSTTHHHHHTTGGGGGCCSCSSC-CCCCCCCCCCTTHHHHTTSCEEEEECBCCHHHHHHHHHHHH
T ss_pred EEEeCCcCCCCCCCcccccccccccccccccccccccc-ccccccchhhhhhhhccCCCeEEEECCCChHHHHHHHHHHH
Confidence 999999986432 11100 000000 000000000 1111111 244567889999999999876678899999999
Q ss_pred HhCCCeeecC-CCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCccc-ccCCCCeEEEEcCCchh
Q 048725 314 LTGIPVASTL-MGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLE-AFASRAKIVHIDIDSAE 391 (661)
Q Consensus 314 ~lg~PV~tt~-~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~-~~~~~~~vi~Id~d~~~ 391 (661)
++|+||++|+ +|+|.++++||+++| +..+++++++||+||++|++++++.+..|. .+. ..++||||+|+.+
T Consensus 243 ~~~~PV~~t~~~~~~~~~~~~~~~lg------~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~-~~~~i~id~d~~~ 315 (556)
T 3hww_A 243 TLGWPLIGDVLSQTGQPLPCADLWLG------NAKATSELQQAQIVVQLGSSLTGKRLLQWQASCE-PEEYWIVDDIEGR 315 (556)
T ss_dssp HHTCCEEECTTTCSCCSSCCHHHHTT------SHHHHHHHTTCSEEEEESBCCCCHHHHHHHHHCC-CSEEEEEESSCSC
T ss_pred hcCCEEEEccCCCCCCCcCcHHHHhc------CchhhhcccCCCEEEEcCCCcccHHHHHHHhcCC-CCeEEEECCCCcc
Confidence 9999999987 589999999998774 567888999999999999999876554443 343 3489999999999
Q ss_pred hccCCCCcceEeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcE
Q 048725 392 IGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAI 471 (661)
Q Consensus 392 i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~i 471 (661)
+++++.+++.+++|++.+|++|.+. ....+......|+++..+... .....+++.++++.|.+.++++.+
T Consensus 316 ~~~~~~~~~~i~~d~~~~l~~l~~~---~~~~w~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~l~~~~i 385 (556)
T 3hww_A 316 LDPAHHRGRRLIANIADWLELHPAE---KRQPWCVEIPRLAEQAMQAVI-------ARRDAFGEAQLAHRICDYLPEQGQ 385 (556)
T ss_dssp CCTTCCSEEEEESCHHHHHHHSCCC---CCCCCCSSHHHHHHHHHHHHH-------TTCCSSSHHHHHHTGGGTCCTTCE
T ss_pred CCCCCCceEEEEcCHHHHHHhcccc---cchHHHHHHHHHHHHHHHHHh-------hcccCcCHHHHHHHHHHhCCCCCe
Confidence 9999999999999999999886431 111111222233332222111 123468999999999999999999
Q ss_pred EEEcCChhHHHHHhhccccCCCeEEec-CCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeE
Q 048725 472 ISTGVGQHQMWAAQFYKYRRPRQWLTS-GGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIK 550 (661)
Q Consensus 472 v~~d~G~~~~~~~~~~~~~~p~~~~~~-~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ 550 (661)
++.|.+....+...+.......+++.+ +++|.||+ +|+|+|++++ ++++||+++|||||+|+++||+|++++++|++
T Consensus 386 v~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~G~-l~~A~Gaa~a-~~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ 463 (556)
T 3hww_A 386 LFVGNSLVVRLIDALSQLPAGYPVYSNRGASGIDGL-LSTAAGVQRA-SGKPTLAIVGDLSALYDLNALALLRQVSAPLV 463 (556)
T ss_dssp EEECSSHHHHHHHHHCCCCTTCCEEECCSSCCSSSH-HHHHHHHHHH-HCCCEEEEEEHHHHHHTGGGHHHHTTCSSCEE
T ss_pred EEEeCCcHHHHHHHhccCCCCceEEecCcccccccH-HHHHHHHHhc-CCCcEEEEEccHHhhhcchhhHhhcccCCCcE
Confidence 988776532222222222333456655 45677777 9999999999 78999999999999999999999999999999
Q ss_pred EEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEE
Q 048725 551 ILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDV 630 (661)
Q Consensus 551 ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV 630 (661)
+||+||++|+|++.++...... ..++..+. .+||.++|++||+++++|++.+||+++|+++++.+||+||||
T Consensus 464 ivv~NN~~~~~~~~~~~~~~~~---~~~~~~~~-----~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~gp~liev 535 (556)
T 3hww_A 464 LIVVNNNGGQIFSLLPTPQSER---ERFYLMPQ-----NVHFEHAAAMFELKYHRPQNWQELETAFADAWRTPTTTVIEM 535 (556)
T ss_dssp EEEEESCC--------------------CCCCC-----CCCSHHHHHHTTCEEECCSSHHHHHHHHHHHTTSSSEEEEEE
T ss_pred EEEEECCCCCcccCCCCcchhH---HHhccCCC-----CCCHHHHHHHcCCcEEecCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 9999999999986543221000 11112211 279999999999999999999999999999999999999999
Q ss_pred EeCCCCCc
Q 048725 631 IFPHQEHV 638 (661)
Q Consensus 631 ~~~~~~~~ 638 (661)
++++++..
T Consensus 536 ~~~~~~~~ 543 (556)
T 3hww_A 536 VVNDTDGA 543 (556)
T ss_dssp ECCSSHHH
T ss_pred ECCccccH
Confidence 99988754
No 19
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=100.00 E-value=5.1e-89 Score=775.89 Aligned_cols=521 Identities=19% Similarity=0.284 Sum_probs=435.5
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNL 166 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~ 166 (661)
.++++++|++.|+++||++|||+||+++++|+++|.++++|++|.++||++|+|||+||||+|| |+||++|+|||++|+
T Consensus 3 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~v~~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~ 81 (563)
T 2vk8_A 3 EITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKG-MSCIITTFGVGELSA 81 (563)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHGGGGSTTCEECCCSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHH
T ss_pred ccCHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHhhcCCceEEccCchHHHHHHHHHHHHhhC-CcEEEEcCCCcHHHH
Confidence 4789999999999999999999999999999999998767999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCCccc----------CCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcC
Q 048725 167 VSGLADALLDSVPLVAITGQVPRRMI----------GTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSG 236 (661)
Q Consensus 167 l~gl~~A~~~~iPll~ItG~~p~~~~----------g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~ 236 (661)
++||++|+.+++|||+||||+|.... |++.+| +|.+++++++||++++.+++++++.+++||+.|.++
T Consensus 82 ~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~~~q--~~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~ 159 (563)
T 2vk8_A 82 LNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFT--VFHRMSANISETTAMITDIATAPAEIDRCIRTTYVT 159 (563)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSSCSS--HHHHHHHTTCSEEEECCCTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCEEEEECCCChHHhhcccccccccCCcchH--HHHHHhhhhEEEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999997653 567788 478999999999999999999999999999999988
Q ss_pred CCceEEEEeccchhhhccCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHH
Q 048725 237 RPGPVLIDVPKDIQQQLAVPNW-NQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVE 313 (661)
Q Consensus 237 ~~GPV~I~iP~dv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae 313 (661)
+ |||||+||.|++.++..... ..+... ........++.+.+++++++|.+||||+|++|+++. ++.+++++|+|
T Consensus 160 ~-GPV~l~iP~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae 236 (563)
T 2vk8_A 160 Q-RPVYLGLPANLVDLNVPAKLLQTPIDM--SLKPNDAESEKEVIDTILVLDKDAKNPVILADACCSRHDVKAETKKLID 236 (563)
T ss_dssp T-SCEEEEEETTGGGSEEEGGGGGSCCCC--SCCCCCHHHHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHH
T ss_pred C-CCEEEEechhhhcCccCCccCcCcccc--cCCCCCchhhHHHHHHHHHHHHhCCCCEEEECcCccccchHHHHHHHHH
Confidence 6 99999999999865432110 001000 000000012345789999999999999999999985 67899999999
Q ss_pred HhCCCeeecCCCCCCCCCCCCCCCcc-cCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhh
Q 048725 314 LTGIPVASTLMGLGSFPGTDELSLQM-LGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEI 392 (661)
Q Consensus 314 ~lg~PV~tt~~gkg~~p~~hpl~lg~-~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i 392 (661)
++|+||++|++|||.||++||+++|+ .|..++..+++++++||+||+||++++++.++.|..+.++.++||||+|+.++
T Consensus 237 ~~~~Pv~~t~~g~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~ 316 (563)
T 2vk8_A 237 LTQFPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSYSYKTKNIVEFHSDHMKI 316 (563)
T ss_dssp HHCCCEEECTTTTTSSCTTSTTEEEECCGGGSCHHHHHHHHTCSEEEEESCCCCTTTTTTTCCCCCCSCEEEECSSEEEE
T ss_pred HhCCCEEECcccCccCCCCCCcccccccCccCCHHHHHHHHhCCEEEEECCCCccccccccccCCCCCeEEEEeCCceEE
Confidence 99999999999999999999999998 57888899999999999999999999998887776555678999999999999
Q ss_pred ccCCCCcceEeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEE
Q 048725 393 GKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAII 472 (661)
Q Consensus 393 ~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv 472 (661)
++++.+++ +++.+|++|.+.+..... .|.+ +.+.+.............+++.++++.|.+.++++.++
T Consensus 317 ~~~~~~~~----~~~~~l~~L~~~l~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv 384 (563)
T 2vk8_A 317 RNATFPGV----QMKFVLQKLLTTIADAAK-------GYKP-VAVPARTPANAAVPASTPLKQEWMWNQLGNFLQEGDVV 384 (563)
T ss_dssp TTEEEETC----CHHHHHHHHHHHHHHHTT-------TCCC-CCCCCCCCCCCCCCTTCBCCHHHHHHHHTTTCCTTCEE
T ss_pred CCcccCCc----CHHHHHHHHHHhhccccc-------hhhh-hhhhhhcccccCCCCCCCcCHHHHHHHHHHhCCCCCEE
Confidence 98766655 468899998876642110 1210 00001111111111234588999999999999999999
Q ss_pred EEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCC----CcEEEEECCcccccChHHHHHHHHcCCC
Q 048725 473 STGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPD----AIIVDIDGDGSFIMNVQELATIKVEKLP 548 (661)
Q Consensus 473 ~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~----~~vv~i~GDGsf~~~~~eL~ta~~~~lp 548 (661)
++|+|++. |..+++....++++++++++|+||+++|+|+|+++|.|+ ++||+++|||+|+|+++||+|++++++|
T Consensus 385 ~~d~G~~~-~~~~~~~~~~~~~~~~~~~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~~~~~el~ta~~~~l~ 463 (563)
T 2vk8_A 385 IAETGTSA-FGINQTTFPNNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLK 463 (563)
T ss_dssp EECTTHHH-HHGGGSCCCSSCEEECCTTTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHHGGGHHHHHHTTCC
T ss_pred EECCchHH-HHHhhcCcCCCCeEEcccchhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhhccHHHHHHHHHcCCC
Confidence 99999875 677888888899999999999999999999999999887 9999999999999999999999999999
Q ss_pred eEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCC---EeeeCCHHHHHHHHH-HHHhCC-
Q 048725 549 IKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIP---GAQVTRKADLRAAIQ-TMLDTP- 623 (661)
Q Consensus 549 v~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~---~~~v~~~~el~~al~-~a~~~~- 623 (661)
+++||+||++|+|++.++. .......+. .+||.++|++||++ +++|++.+||+++|+ ++++.+
T Consensus 464 ~~ivv~nN~~~~~~~~~~~----~~~~~~~~~--------~~d~~~~a~a~G~~~~~~~~v~~~~el~~al~~~a~~~~~ 531 (563)
T 2vk8_A 464 PYLFVLNNDGYTIQKLIHG----PKAQYNEIQ--------GWDHLSLLPTFGAKDYETHRVATTGEWDKLTQDKSFNDNS 531 (563)
T ss_dssp CEEEEEESSSCHHHHHHSC----TTCGGGCCC--------CCCGGGHHHHTTCSSEEEEEECBHHHHHHHHTCTTTTSCS
T ss_pred cEEEEEECCcchhhhhhhC----CCCCcccCC--------CCCHHHHHHHhCCCCCcEEEecCHHHHHHHHHHHHHhCCC
Confidence 9999999999999875431 110001111 27999999999999 999999999999999 888754
Q ss_pred CcEEEEEEeCCCCCc
Q 048725 624 GPYLLDVIFPHQEHV 638 (661)
Q Consensus 624 gp~lIeV~~~~~~~~ 638 (661)
+|+||||++++++..
T Consensus 532 ~p~liev~~~~~~~~ 546 (563)
T 2vk8_A 532 KIRMIEVMLPVFDAP 546 (563)
T ss_dssp SEEEEEEECCTTCCC
T ss_pred CcEEEEEEeCccccC
Confidence 799999999987753
No 20
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=100.00 E-value=5.4e-88 Score=765.90 Aligned_cols=517 Identities=20% Similarity=0.273 Sum_probs=434.2
Q ss_pred CCCCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhH
Q 048725 85 DQPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGAT 164 (661)
Q Consensus 85 ~~~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~ 164 (661)
...++++++|++.|+++||++|||+||+++++|+++|.++++|++|.++||++|+|||+||||+|| ++||++|+|||++
T Consensus 2 ~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg-~~v~~~tsGpG~~ 80 (552)
T 1ovm_A 2 RTPYCVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCKG-FAALLTTFGVGEL 80 (552)
T ss_dssp -CCCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHH
T ss_pred CCccCHHHHHHHHHHHcCCCEEEECCChhHHHHHHHHhcCCCceEEeeCcHHHHHHHHHHHHHhhC-CcEEEEccCCcHH
Confidence 346899999999999999999999999999999999998777999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHhhhCCCcEEEEecCCCCccc----------CCCCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhh
Q 048725 165 NLVSGLADALLDSVPLVAITGQVPRRMI----------GTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLAT 234 (661)
Q Consensus 165 N~l~gl~~A~~~~iPll~ItG~~p~~~~----------g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~ 234 (661)
|+++||++|+.+++|||+||||+|.... |.+.+| +|.+++++++||++++.+ +++++.+++|++.|+
T Consensus 81 N~~~gv~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~~q--~~~~~~~~~tk~~~~v~~-~~~~~~i~~A~~~a~ 157 (552)
T 1ovm_A 81 SAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFR--HFYHMSEPITVAQAVLTE-QNACYEIDRVLTTML 157 (552)
T ss_dssp HTHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCS--HHHHHTGGGCSEEEECCT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCEEEEECCCCHHHHhcccccccccCCCcHH--HHHHHHHhheeEEEEEcc-ccHHHHHHHHHHHHH
Confidence 9999999999999999999999997653 445677 478999999999999999 999999999999999
Q ss_pred cCCCceEEEEeccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHH
Q 048725 235 SGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFV 312 (661)
Q Consensus 235 s~~~GPV~I~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~la 312 (661)
+++ |||||+||.|++.++.... +.............+..+.+++++++|.++|||+|++|+|+. ++.+++++|+
T Consensus 158 ~~~-GPV~l~iP~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~la 233 (552)
T 1ovm_A 158 RER-RPGYLMLPADVAKKAATPP---VNALTHKQAHADSACLKAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWV 233 (552)
T ss_dssp HHT-CCEEEEEEHHHHHSBCCCC---SSCCCCCCCCCCHHHHHHHHHHHHHHHHTCSCEEEEECHHHHHTTCHHHHHHHH
T ss_pred hCC-CCEEEEeehhhccCccCCC---cccccccCCCCCccchHHHHHHHHHHHHhCCCCEEEECcCccccCHHHHHHHHH
Confidence 886 9999999999986544211 111111000000012346799999999999999999999985 6789999999
Q ss_pred HHhCCCeeecCCCCCCCCCCCCCCCcc-cCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchh
Q 048725 313 ELTGIPVASTLMGLGSFPGTDELSLQM-LGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAE 391 (661)
Q Consensus 313 e~lg~PV~tt~~gkg~~p~~hpl~lg~-~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~ 391 (661)
|++|+||++|++|||.+|++||+++|+ .|..++..++++++++|+||++|++++++.++.|..+.++.++||||+|+.+
T Consensus 234 e~~~~Pv~~t~~~~g~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~ 313 (552)
T 1ovm_A 234 KEVPMAHATMLMGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTDTLTAGFTHQLTPAQTIEVQPHAAR 313 (552)
T ss_dssp HHSCCEEEECGGGTTSSCTTSTTCCCCCCGGGSCHHHHHHHHTSSEEEEESCCCCTTTTTTTCCCCCTTTEEEECSSEEE
T ss_pred HHHCCCEEEccccCccCCCCCcCeecccCCCCCCHHHHHHHHhCCEEEEECCCCCcccccccccCCCCCeEEEEeCChhe
Confidence 999999999999999999999999998 4888889999999999999999999999888877666667899999999999
Q ss_pred hccCCCCcceEeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcE
Q 048725 392 IGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAI 471 (661)
Q Consensus 392 i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~i 471 (661)
+++++.+++ +++.+|++|.+ +.... ..+...|++... .........+++..+++.|++.++++.+
T Consensus 314 ~~~~~~~~~----~~~~~l~~L~~-l~~~~---~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~l~~~~i 378 (552)
T 1ovm_A 314 VGDVWFTGI----PMNQAIETLVE-LCKQH---VHAGLMSSSSGA-------IPFPQPDGSLTQENFWRTLQTFIRPGDI 378 (552)
T ss_dssp ETTEEEESC----CHHHHHHHHHH-HHHTS---CCC---------------------CCSBCCHHHHHHHHHHHCCTTCE
T ss_pred eCCcccCCc----cHHHHHHHHHh-Ccccc---cchhhhhhhccc-------cccCCCCCccCHHHHHHHHHHhcCCCCE
Confidence 998766554 45889999887 64221 111112322110 0111123458999999999999999999
Q ss_pred EEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEE
Q 048725 472 ISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKI 551 (661)
Q Consensus 472 v~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~i 551 (661)
++.|+|++. |..++++..+++++++++++|+||+++|+|+|++++.|+++||+++|||+|+|+++||+|++++++|+++
T Consensus 379 vv~d~G~~~-~~~~~~~~~~~~~~~~~~~~g~mG~~l~~A~G~a~a~~~~~vv~~~GDG~~~~~~~el~ta~~~~l~~~i 457 (552)
T 1ovm_A 379 ILADQGTSA-FGAIDLRLPADVNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVLTGDGAAQLTIQELGSMLRDKQHPII 457 (552)
T ss_dssp EEECTTHHH-HHHTTCCCCSSCEEECCTTTCCTTHHHHHHHHHHHHCTTSCEEEEEEHHHHHHHTTHHHHHHHTTCCCEE
T ss_pred EEECCchHH-HHHHhcccCCCCeEEechhhHhhhhHHHHHHHHHHhCCCCcEEEEECchHHHhHHHHHHHHHHhCCCCEE
Confidence 999999976 6788888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCC----CEeeeCCHHHHHHHHHHHHhCCCcEE
Q 048725 552 LLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGI----PGAQVTRKADLRAAIQTMLDTPGPYL 627 (661)
Q Consensus 552 vV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~----~~~~v~~~~el~~al~~a~~~~gp~l 627 (661)
||+||++|+|++.++ +.......+ ..+||.++|++||+ ++.+|++.+||+++|+++++.+||+|
T Consensus 458 vv~nN~~~~~~~~~~----~~~~~~~~~--------~~~d~~~~a~a~G~~~~~~~~~v~~~~~l~~al~~a~~~~gp~l 525 (552)
T 1ovm_A 458 LVLNNEGYTVERAIH----GAEQRYNDI--------ALWNWTHIPQALSLDPQSECWRVSEAEQLADVLEKVAHHERLSL 525 (552)
T ss_dssp EEEESSSCHHHHHHS----CTTCGGGCC--------CCCCGGGSTTTSCSSCCEEEEEECBHHHHHHHHHHHTTCSSEEE
T ss_pred EEEECCCCeEEEeec----cCCCCcccC--------CCCCHHHHHHHhCCCcCCCEEEeCCHHHHHHHHHHHHhCCCCEE
Confidence 999999999986542 111000111 12799999999999 89999999999999999999899999
Q ss_pred EEEEeCCCCC
Q 048725 628 LDVIFPHQEH 637 (661)
Q Consensus 628 IeV~~~~~~~ 637 (661)
|||++++++.
T Consensus 526 iev~~~~~~~ 535 (552)
T 1ovm_A 526 IEVMLPKADI 535 (552)
T ss_dssp EEEECCTTCC
T ss_pred EEEEcCcccC
Confidence 9999998774
No 21
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=100.00 E-value=5.6e-87 Score=758.44 Aligned_cols=513 Identities=22% Similarity=0.321 Sum_probs=427.4
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNL 166 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~ 166 (661)
+++++++|++.|+++||++|||+||+++++|+++|.+++.+++|.++||++|+|||+||||+||||+||++|+|||++|+
T Consensus 20 ~~~~a~~lv~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~~~i~~~~E~~Aa~~A~GyAr~tgkp~v~~~TsGpG~~N~ 99 (565)
T 2nxw_A 20 HMKLAEALLRALKDRGAQAMFGIPGDFALPFFKVAEETQILPLHTLSHEPAVGFAADAAARYSSTLGVAAVTYGAGAFNM 99 (565)
T ss_dssp CCBHHHHHHHHHHHTTCCCEEECCCGGGHHHHHHHHHHCSSCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTTHHHHTT
T ss_pred CcCHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHHHHhCCCeEEEECCCCCHHHH
Confidence 47999999999999999999999999999999999876557899999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCCcccCCCCC-----CCCC-HHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCce
Q 048725 167 VSGLADALLDSVPLVAITGQVPRRMIGTDAF-----QETP-IVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGP 240 (661)
Q Consensus 167 l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~-----q~~~-~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GP 240 (661)
++||++|+.+++|||+||||++....+++.+ |++| |.+++++++||++++.+++++++.+++||+.|+++ +||
T Consensus 100 ~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~-~GP 178 (565)
T 2nxw_A 100 VNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKEITVAQARLDDPAKAPAEIARVLGAARAQ-SRP 178 (565)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHTTSCSCEEECCCTTTHHHHHHHHHHHHHHH-TCC
T ss_pred HHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHHhhheEEEEeCCHHHHHHHHHHHHHHHHhC-CCC
Confidence 9999999999999999999999998888764 7788 99999999999999999999999999999999987 599
Q ss_pred EEEEeccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCC
Q 048725 241 VLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIP 318 (661)
Q Consensus 241 V~I~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~P 318 (661)
|||+||.|++.++..+.. ..+. ......+.++.+++++++|.++|||+|++|+|+. ++.+++++|||++|+|
T Consensus 179 V~l~iP~Dv~~~~~~~~~----~~~~--~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~P 252 (565)
T 2nxw_A 179 VYLEIPRNMVNAEVEPVG----DDPA--WPVDRDALAACADEVLAAMRSATSPVLMVCVEVRRYGLEAKVAELAQRLGVP 252 (565)
T ss_dssp EEEEEEGGGTTCBCCCCC----CCCC--CCCCHHHHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHCSC
T ss_pred EEEECChhhhcCcCCCcc----ccCC--CCCCchhhHHHHHHHHHHHHcCCCCEEEECCCcchhchHHHHHHHHHHhCCC
Confidence 999999999876543211 0000 0000011246788999999999999999999875 5789999999999999
Q ss_pred eeecCCCCCCCCCCCCCCCcc-cCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhccCCC
Q 048725 319 VASTLMGLGSFPGTDELSLQM-LGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQ 397 (661)
Q Consensus 319 V~tt~~gkg~~p~~hpl~lg~-~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~ 397 (661)
|++|++|||.+|++||+++|+ .|..++..++++++++|+||++|+++.++.++.+....+..++||||.|+.++++++.
T Consensus 253 v~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~i~~d~~~~~~~~~ 332 (565)
T 2nxw_A 253 VVTTFMGRGLLADAPTPPLGTYIGVAGDAEITRLVEESDGLFLLGAILSDTNFAVSQRKIDLRKTIHAFDRAVTLGYHTY 332 (565)
T ss_dssp EEECGGGTTTTTTSSSCCSCBCCGGGSCHHHHHHHHTCSEEEEESCCBCSSTTSBCTTTSCGGGEEEEETTEEEETTEEE
T ss_pred EEECcccCccCCCCCCccccccCcccCCHHHHHHHHhCCEEEEECCCccccccccccccCCCCcEEEEeCCceeeCCccc
Confidence 999999999999999999997 6888899999999999999999999998887766443345689999999999998655
Q ss_pred CcceEeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCC--CcEE-EE
Q 048725 398 PHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNG--EAII-ST 474 (661)
Q Consensus 398 ~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~--d~iv-~~ 474 (661)
.++. +..+|++|.+.+.... ..|... .+ . ............+++..+++.|.+.+++ +.++ ++
T Consensus 333 ~~~~----~~~~l~~L~~~l~~~~-------~~w~~~-~~-~-~~~~~~~~~~~~l~~~~v~~~l~~~l~~~~~~iv~~~ 398 (565)
T 2nxw_A 333 ADIP----LAGLVDALLERLPPSD-------RTTRGK-EP-H-AYPTGLQADGEPIAPMDIARAVNDRVRAGQEPLLIAA 398 (565)
T ss_dssp ESCC----HHHHHHHHHHTSCCCC-------CCCCCS-CS-S-CCCCCCCCSSSBCCHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred CCcc----HHHHHHHHHHhccccc-------hhhhhh-hh-h-hccccccCCCCccCHHHHHHHHHHhcccccCCEEEEe
Confidence 5544 4678888887664321 113210 00 0 1111111123458999999999999998 8887 89
Q ss_pred cCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEE
Q 048725 475 GVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLL 554 (661)
Q Consensus 475 d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~ 554 (661)
|+|++. |...++ .+++++.++++|+||+++|+|+|+++|.|+++||+++|||+|+|+++||+|++++++|+++||+
T Consensus 399 d~G~~~-~~~~~~---~~~~~~~~~~~g~mG~~l~~A~G~ala~~~~~vv~i~GDG~~~~~~~~l~ta~~~~l~~~ivv~ 474 (565)
T 2nxw_A 399 DMGDCL-FTAMDM---IDAGLMAPGYYAGMGFGVPAGIGAQCVSGGKRILTVVGDGAFQMTGWELGNCRRLGIDPIVILF 474 (565)
T ss_dssp CSSHHH-HHHTTS---CCSCEECCTTTCCTTCHHHHHHHHHHHTTTCCEEEEEEHHHHHHHGGGGGGHHHHTCCCEEEEE
T ss_pred cchHHH-HHHHhC---CCcEEEccCccccccccchHHHHHHHhCCCCcEEEEEechHHHhhHHHHHHHHHhCCCCEEEEE
Confidence 999876 555444 7788999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcE-EEEEEeC
Q 048725 555 NNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPY-LLDVIFP 633 (661)
Q Consensus 555 NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~-lIeV~~~ 633 (661)
||++|+|++++|.. ... ..+. .+||.++|++||+++++|++.+||+++|+++++.+||. ||||+|+
T Consensus 475 nN~~~~~~~~~~~~----~~~-~~~~--------~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~gp~~liev~~~ 541 (565)
T 2nxw_A 475 NNASWEMLRTFQPE----SAF-NDLD--------DWRFADMAAGMGGDGVRVRTRAELKAALDKAFATRGRFQLIEAMIP 541 (565)
T ss_dssp ECSBCHHHHHHCTT----CGG-GBCC--------CCCHHHHTGGGTSEEEEECBHHHHHHHHHHHHHCCSSCEEEEEECC
T ss_pred ECCCCcEEeeeccc----CCC-CcCC--------CCCHHHHHHHcCCCEEEeCCHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 99999998765321 001 1111 27999999999999999999999999999999988988 9999999
Q ss_pred CCCC
Q 048725 634 HQEH 637 (661)
Q Consensus 634 ~~~~ 637 (661)
+++.
T Consensus 542 ~~~~ 545 (565)
T 2nxw_A 542 RGVL 545 (565)
T ss_dssp TTCC
T ss_pred cccC
Confidence 8764
No 22
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=100.00 E-value=1.9e-85 Score=747.32 Aligned_cols=515 Identities=19% Similarity=0.324 Sum_probs=432.1
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 048725 86 QPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATN 165 (661)
Q Consensus 86 ~~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N 165 (661)
..++++|+|++.|+++||++|||+||+++++|+++|.++++|++|.++||++|+|||+||||+|| |+||++|+|||++|
T Consensus 23 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~GyAr~tG-~~v~~~tsGpG~~N 101 (570)
T 2vbf_A 23 SMYTVGDYLLDRLHELGIEEIFGVPGDYNLQFLDQIISREDMKWIGNANELNASYMADGYARTKK-AAAFLTTFGVGELS 101 (570)
T ss_dssp -CCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHH
T ss_pred CcCCHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhcCCCCeEECcCcHHHHHHHHHHHHHHhC-CeEEEEcCCCCHHH
Confidence 35799999999999999999999999999999999998767999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhhhCCCcEEEEecCCCCcccCCCC--CC-----CC-CHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCC
Q 048725 166 LVSGLADALLDSVPLVAITGQVPRRMIGTDA--FQ-----ET-PIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGR 237 (661)
Q Consensus 166 ~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~--~q-----~~-~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~ 237 (661)
+++||++|+.+++|||+||||++....+++. +| +. +|.+++++++||++++.+ ++++..+++|++.|+++|
T Consensus 102 ~~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~-~~~~~~l~~A~~~A~~~~ 180 (570)
T 2vbf_A 102 AINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMKMHEPVTAARTLLTA-ENATYEIDRVLSQLLKER 180 (570)
T ss_dssp HHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHHHTGGGCSEEEECCT-TTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhCCCEEEEeCCCCHHHhhccccceeeccccchHHHHHHhhhhEEEEEEECc-ccHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999987665433 22 12 378999999999999999 999999999999999987
Q ss_pred CceEEEEeccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHh
Q 048725 238 PGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELT 315 (661)
Q Consensus 238 ~GPV~I~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~l 315 (661)
|||||+||.|++.++.... ..............+ .+.+++++++|.++|||+|++|+|+. ++.+++++|+|++
T Consensus 181 -GPV~l~iP~d~~~~~~~~~---~~~~~~~~~~~~~~~-~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~ 255 (570)
T 2vbf_A 181 -KPVYINLPVDVAAAKAEKP---ALSLEKESSTTNTTE-QVILSKIEESLKNAQKPVVIAGHEVISFGLEKTVTQFVSET 255 (570)
T ss_dssp -CCEEEEEEHHHHTSBCCCC---SSCCC------CHHH-HHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHH
T ss_pred -CCEEEEcchhhhcCcccCC---cccccccCCCCCccH-HHHHHHHHHHHHcCCCCEEEECcCccccChHHHHHHHHHHH
Confidence 9999999999986654211 001100000000011 56789999999999999999999985 5689999999999
Q ss_pred CCCeeecCCCCCCCCCCCCCCCcc-cCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCchhhcc
Q 048725 316 GIPVASTLMGLGSFPGTDELSLQM-LGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGK 394 (661)
Q Consensus 316 g~PV~tt~~gkg~~p~~hpl~lg~-~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~~i~~ 394 (661)
|+||++|++|||.+|++||+++|. .|..++..++++++++|+||+||+++.++.++.|..+.++.++||||+|+.++++
T Consensus 256 ~~Pv~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~ 335 (570)
T 2vbf_A 256 KLPITTLNFGKSAVDESLPSFLGIYNGKLSEISLKNFVESADFILMLGVKLTDSSTGAFTHHLDENKMISLNIDEGIIFN 335 (570)
T ss_dssp CCCEEECSTTTTSSCTTSTTEEEECCGGGSCHHHHHHHHHCSEEEEESCCCCGGGTTTTCCCCCGGGEEEECSSCEEETT
T ss_pred CCCEEECcccCccCCCCCcCccCCcCCCcCCHHHHHHHHhCCEEEEECCCcccccccccccCCCCCeEEEEeCCHHHhCC
Confidence 999999999999999999999998 4778888899999999999999999998888776655567799999999999998
Q ss_pred CCCCcceEeccHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHhhCCCCcCCCCCCCChHHHHHHHhhhcCCCcEEEE
Q 048725 395 NKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIIST 474 (661)
Q Consensus 395 ~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~ 474 (661)
++.+++ |++.+|++|.+.+.... + .|.. . .+.... ...+..+++..+++.|.+.++++.+++.
T Consensus 336 ~~~~~~----~~~~~l~~L~~~l~~~~-----~--~~~~----~-~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~iv~~ 398 (570)
T 2vbf_A 336 KVVEDF----DFRAVVSSLSELKGIEY-----E--GQYI----D-KQYEEF-IPSSAPLSQDRLWQAVESLTQSNETIVA 398 (570)
T ss_dssp EEECSS----CHHHHHHTGGGCCSCCC-----C--SCCC----C-CCCCCC-CCCSSBCCHHHHHHHHHHHCCSSEEEEE
T ss_pred eeecCC----CHHHHHHHHHHhccccc-----c--ccch----h-hhcccc-CCCCCCcCHHHHHHHHHHhcCCCCEEEE
Confidence 766554 78999998877554211 1 0210 0 011111 1123468999999999999999999999
Q ss_pred cCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEE
Q 048725 475 GVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLL 554 (661)
Q Consensus 475 d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~ 554 (661)
|+|++. |..++++...++++++++++|+||+++|+|+|+++|+|+++||+++|||+|+|+++||+|++++++|+++||+
T Consensus 399 d~G~~~-~~~~~~~~~~~~~~~~~~~~g~mG~~l~~A~Gaala~~~~~vv~~~GDG~~~~~~~eL~ta~~~~l~~~ivv~ 477 (570)
T 2vbf_A 399 EQGTSF-FGASTIFLKSNSRFIGQPLWGSIGYTFPAALGSQIADKESRHLLFIGDGSLQLTVQELGLSIREKLNPICFII 477 (570)
T ss_dssp CTTHHH-HHHTTSCCCTTCEEECCTTTCCTTTHHHHHHHHHHHCTTSEEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEE
T ss_pred eCCHHH-HHHHhcccCCCCeEecCccchhhhhhHHHHHHHHHhCCCCcEEEEEcchhhhcCHHHHHHHHHcCCCCEEEEE
Confidence 999986 5677888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCC-----EeeeCCHHHHHHHHHH-HHhCCCcEEE
Q 048725 555 NNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIP-----GAQVTRKADLRAAIQT-MLDTPGPYLL 628 (661)
Q Consensus 555 NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~-----~~~v~~~~el~~al~~-a~~~~gp~lI 628 (661)
||++|+|++.++.. .. .+ .+. ..+||.++|++||++ +.+|++.+||+++|++ +++.+||.||
T Consensus 478 nN~~~~~~~~~~~~----~~--~~-~~~-----~~~d~~~~a~a~G~~~~~~~~~~v~~~~el~~al~~a~~~~~~p~li 545 (570)
T 2vbf_A 478 NNDGYTVEREIHGP----TQ--SY-NDI-----PMWNYSKLPETFGATEDRVVSKIVRTENEFVSVMKEAQADVNRMYWI 545 (570)
T ss_dssp ESSSCHHHHHHSCT----TC--GG-GCC-----CCCCGGGHHHHTTCCTTTEEEEEECBHHHHHHHHHHHHHCTTSEEEE
T ss_pred ECCchHHHHHHhcc----CC--Cc-cCC-----CCCCHHHHHHHcCCCcCCcceEEecCHHHHHHHHHHHHhcCCCcEEE
Confidence 99999998754311 10 01 111 127999999999998 8999999999999998 4778899999
Q ss_pred EEEeCCCCC
Q 048725 629 DVIFPHQEH 637 (661)
Q Consensus 629 eV~~~~~~~ 637 (661)
||++++++.
T Consensus 546 ev~~~~~~~ 554 (570)
T 2vbf_A 546 ELVLEKEDA 554 (570)
T ss_dssp EEECCTTCC
T ss_pred EEEcCcccc
Confidence 999998774
No 23
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=99.85 E-value=2.5e-21 Score=233.67 Aligned_cols=188 Identities=13% Similarity=0.186 Sum_probs=150.3
Q ss_pred CCCCCCCChHHHHHHHhhhcCCCcEEEEcCChhHHHHHhhccc----cCCC---eEEecC--CCCcccchHHH-------
Q 048725 447 KTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKY----RRPR---QWLTSG--GLGAMGFGLPA------- 510 (661)
Q Consensus 447 ~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~G~~~~~~~~~~~~----~~p~---~~~~~~--~~g~mG~~lpa------- 510 (661)
...|.++.+..+++.|.++++++.+|++|+|++.+|+.+++.. ..++ .|.++. +.+.||+|+++
T Consensus 808 ~~aC~GCge~~~ik~l~ql~g~~~iian~tGc~siw~~~~~~~~~~~~~~g~~p~~~~Slf~~~a~mG~G~~~~~~~~~~ 887 (1231)
T 2c42_A 808 SGACSGCGETPYVRVITQLFGERMFIANATGCSSIWGASAPSMPYKTNRLGQGPAWGNSLFEDAAEYGFGMNMSMFARRT 887 (1231)
T ss_dssp CSCCTTCSSHHHHHHHHHHHGGGEEEEECSSHHHHHHHBTTCCCBCCCTTSCCCEEECCCSTTHHHHHHHHHHHHHHHHH
T ss_pred CcccCCCCcHHHHHHHHHhcCCCeEEEecCchHHHHHhhcccCCcccccCCCCcceecccCcchHHHHHHHHHHHHHHHH
Confidence 3457788899999999999999999999999999999998543 2333 788773 66999999999
Q ss_pred --------------------HH--------------------HhhhhCCC----------------CcEEEEECCc-ccc
Q 048725 511 --------------------AI--------------------GAAVANPD----------------AIIVDIDGDG-SFI 533 (661)
Q Consensus 511 --------------------Ai--------------------Gaala~p~----------------~~vv~i~GDG-sf~ 533 (661)
|| |++++.++ ++||++.||| +|+
T Consensus 888 ~~~~~~~~~~~~~~~~~~~~Ai~~w~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~Vv~i~GDG~~~~ 967 (1231)
T 2c42_A 888 HLADLAAKALESDASGDVKEALQGWLAGKNDPIKSKEYGDKLKKLLAGQKDGLLGQIAAMSDLYTKKSVWIFGGDGWAYD 967 (1231)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTTCCSHHHHHHHTTGGGTSCCEEEEEEEHHHHHT
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcCCchHHHHHhhhhhhccCCcEEEEeCcHHHHH
Confidence 99 99998544 7899999999 999
Q ss_pred cChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEee---e-CCH
Q 048725 534 MNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQ---V-TRK 609 (661)
Q Consensus 534 ~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~---v-~~~ 609 (661)
|++|||.|++++++|+++||+||+.|||+++ |...+......+.+. +.......+||.++|++||+.+++ + +++
T Consensus 968 mg~~eL~ta~~~~~~v~iiVlnN~~yg~tg~-Q~s~~t~~~~~t~~~-~~g~~~~~~D~~~iA~a~G~~~va~~~v~~~~ 1045 (1231)
T 2c42_A 968 IGYGGLDHVLASGEDVNVFVMDTEVYSNTGG-QSSKATPTGAVAKFA-AAGKRTGKKDLARMVMTYGYVYVATVSMGYSK 1045 (1231)
T ss_dssp TTHHHHHHHHHTTCSCEEEEEECSSBTTTTC-BCCTTSCTTCCBBTB-TTCCSSCCCCHHHHHHTTSSSEEEEECTTTCH
T ss_pred cchHHHHHHHHhCCCeEEEEEECHHHHhHHh-hhccCCCCCceeeec-ccCCCCCchhHHHHHHHCCCCEEEEEeccCCH
Confidence 9999999999999999999999999999963 322111000011110 111111237999999999999985 3 599
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEeCCCC
Q 048725 610 ADLRAAIQTMLDTPGPYLLDVIFPHQE 636 (661)
Q Consensus 610 ~el~~al~~a~~~~gp~lIeV~~~~~~ 636 (661)
+||.++|++|++.+||+||||.++...
T Consensus 1046 ~~l~~al~eAl~~~GP~lI~v~~~c~~ 1072 (1231)
T 2c42_A 1046 QQFLKVLKEAESFPGPSLVIAYATCIN 1072 (1231)
T ss_dssp HHHHHHHHHHHHSSSCEEEEEECCCGG
T ss_pred HHHHHHHHHHHhcCCCEEEEEeecCcc
Confidence 999999999999999999999998764
No 24
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=99.76 E-value=6.8e-20 Score=174.79 Aligned_cols=134 Identities=20% Similarity=0.277 Sum_probs=108.5
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeecCCCCCCCCCCCC--CC--CcccCCCCcHHHH
Q 048725 276 SEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTLMGLGSFPGTDE--LS--LQMLGMHGTVYAN 349 (661)
Q Consensus 276 ~~~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hp--l~--lg~~G~~g~~~a~ 349 (661)
+...+++++++|++||||+|++|+|+. ++.+++++|+|++|+||++|++|||+||++|| ++ +|++|..++..++
T Consensus 20 ~~~~v~~aa~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~iPV~~t~~gkg~~~~~hp~~~~~~~G~~G~~~~~~~~ 99 (170)
T 3cf4_G 20 KAVSPEMAAKIISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAATGSSLAVLADKDVDAKYINAHMLGFYLTDPKW 99 (170)
T ss_dssp EECCHHHHHHHHHHCSSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEECTTTHHHHTTSSSCEEECCHHHHHHHTTCTTC
T ss_pred CHHHHHHHHHHHHcCCCCEEEECCCccchhHHHHHHHHHHHhCCCEEECcccCcccCCCChhhhcceeeeccccCChhhh
Confidence 345589999999999999999999986 56789999999999999999999999999999 99 9998887777777
Q ss_pred ---HhhhcCCEEEEeCCCC--CCCcCCcccccCCCCeEEEEcCCchhhccCCCCcceEe---ccHHHHHHHHHHHh
Q 048725 350 ---YAVDKSDLLLAFGVRF--DDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVC---ADLKLALKGINRIL 417 (661)
Q Consensus 350 ---~~l~~aDlvL~vG~~~--~~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~---~D~~~~L~~L~~~l 417 (661)
+++++||+||++|+++ +++.++.+..|.+ .++|++ ++++.+++... -..+++|+.|.+.+
T Consensus 100 ~~~~~~~~aDlvl~iG~~~~~~~~~t~~~~~~~~-~~iI~i-------~~~~~~~~~~~~~~l~~~~~l~~L~~~~ 167 (170)
T 3cf4_G 100 PGLDGNGNYDMIITIGFKKFYINQVLSAAKNFSN-LKTIAI-------ERGYIQNATMSFGNLSKADHYAALDELI 167 (170)
T ss_dssp CCSSSSCCCSEEEEESCCHHHHHHHHHHHHHHCC-CCEEEC-------SSSCCTTSSEECCCCCHHHHHHHHHHHH
T ss_pred hHHHHhhcCCEEEEECCccCccccccccccccCC-CeEEEE-------CCCcccchhhhhccCCHHHHHHHHHHHH
Confidence 8899999999999999 8887777776666 778844 44454443221 12566666666544
No 25
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=99.65 E-value=4.6e-19 Score=168.21 Aligned_cols=109 Identities=24% Similarity=0.373 Sum_probs=86.6
Q ss_pred HHHH-HHHHHhCCCcEEEEcCCcc--chHHHHHHHHHHhCCCeeecCCCCCCCCC-CC-CCCCcccCCCCcHHHHHhh--
Q 048725 280 LEQI-VRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTLMGLGSFPG-TD-ELSLQMLGMHGTVYANYAV-- 352 (661)
Q Consensus 280 l~~~-~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt~~gkg~~p~-~h-pl~lg~~G~~g~~~a~~~l-- 352 (661)
++++ +++|++||||||++|+ +. ++.+++++|+|+ ++||++|++|+|.||+ +| |++.+ +|++ ...+...
T Consensus 24 i~~a~a~lI~~AkRPvIl~Gg-v~~~~A~~eL~~~ae~-~iPVvtT~~g~g~~~~~~~~p~~~~-~G~~--~~g~~~~~~ 98 (174)
T 1ytl_A 24 KGKPVANMIKKAKRPLLIVGP-DMTDEMFERVKKFVEK-DITVVATGSAITRFIDAGLGEKVNY-AVLH--ELTQFLLDP 98 (174)
T ss_dssp CHHHHHHHHHHCSSEEEEECS-CCCHHHHHHHHHHHTS-SSEEEEETTHHHHHHHTTCGGGSEE-ECHH--HHHHHHHST
T ss_pred HHHHHHHHHHcCCCCEEEECC-CCCccHHHHHHHHHHc-CCCEEEcccccCcCCCCCCCccccc-cccH--HHHHHhhhh
Confidence 6788 9999999999999999 86 567999999999 9999999999999999 99 84333 2321 1223333
Q ss_pred --------hcCCEEEEeCCCCC--CCcCCcccccCCCCeEEEEcCCchhhccCCCCcc
Q 048725 353 --------DKSDLLLAFGVRFD--DRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHV 400 (661)
Q Consensus 353 --------~~aDlvL~vG~~~~--~~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~ 400 (661)
++|||||++|++|+ ++.++.++.|.++.++|||| ++++++.
T Consensus 99 ~~~~~~~~~~aDLvI~iG~rf~~~~~~t~~~~~fap~akii~Id-------k~~~~da 149 (174)
T 1ytl_A 99 DWKGFDGQGNYDLVLMLGSIYYHGSQMLAAIKNFAPHIRALAID-------RYYHPNA 149 (174)
T ss_dssp TCCCTTSSCCCSEEEEESCCHHHHHHHHHHHHHHCTTCEEEECS-------SSCCTTS
T ss_pred hhhhhcccCCCCEEEEECCcCCccccccccccccCCCCeEEEeC-------CCcCCCH
Confidence 89999999999997 55566777787788999975 6666643
No 26
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=99.64 E-value=2.7e-16 Score=167.42 Aligned_cols=119 Identities=21% Similarity=0.249 Sum_probs=99.3
Q ss_pred CCCCcccchHHHHHHhhhhC----CCCcEEEEECCcccccC--hHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcc
Q 048725 499 GGLGAMGFGLPAAIGAAVAN----PDAIIVDIDGDGSFIMN--VQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKA 572 (661)
Q Consensus 499 ~~~g~mG~~lpaAiGaala~----p~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~ 572 (661)
.+.|+||+++|.|+|+|+|. +++.|||++|||+|.++ ..+|.+|.++++|+++||.||+ |++..
T Consensus 139 ~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~-~gi~~--------- 208 (368)
T 1w85_A 139 PPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR-FAIST--------- 208 (368)
T ss_dssp CCCCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECS-EETTE---------
T ss_pred CCccccCccccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCC-cccee---------
Confidence 45689999999999999986 48899999999999985 4579999999999999998885 98841
Q ss_pred cccccccCCCCCcccCCccHHHHHhHcCCCEeeeC--CHHHHHHHHHHHHh----CCCcEEEEEEeCCCC
Q 048725 573 NRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVT--RKADLRAAIQTMLD----TPGPYLLDVIFPHQE 636 (661)
Q Consensus 573 ~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIeV~~~~~~ 636 (661)
. ...... .+|+.++|++||+++.+|+ +++++.+++++|++ .+||+|||++|.+..
T Consensus 209 ~-~~~~~~--------~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r~~ 269 (368)
T 1w85_A 209 P-VEKQTV--------AKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYG 269 (368)
T ss_dssp E-GGGTCS--------CSCSGGGGGGTTCCEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSS
T ss_pred c-cccccC--------CCCHHHHHHHCCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccC
Confidence 0 011111 2689999999999999997 79999999999986 579999999998754
No 27
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=99.63 E-value=4.3e-16 Score=167.75 Aligned_cols=116 Identities=16% Similarity=0.171 Sum_probs=98.2
Q ss_pred CCCcccchHHHHHHhhhhCC----CCcEEEEECCcccccCh--HHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhccc
Q 048725 500 GLGAMGFGLPAAIGAAVANP----DAIIVDIDGDGSFIMNV--QELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKAN 573 (661)
Q Consensus 500 ~~g~mG~~lpaAiGaala~p----~~~vv~i~GDGsf~~~~--~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~ 573 (661)
+.|+||+++|.|+|+++|.+ ++.|||++|||+|+++. ++|.+|.++++|+++||.|| +|++...
T Consensus 160 ~~g~lG~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN-~~~i~~~--------- 229 (400)
T 2bfd_A 160 ISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNN-GYAISTP--------- 229 (400)
T ss_dssp CCSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEEC-SEETTEE---------
T ss_pred cCccccccccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECC-ceeeeec---------
Confidence 44899999999999999976 89999999999999976 99999999999999998888 6988521
Q ss_pred ccccccCCCCCcccCCccHHHHHhHcCCCEeeeC--CHHHHHHHHHHHHh----CCCcEEEEEEeCC
Q 048725 574 RAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVT--RKADLRAAIQTMLD----TPGPYLLDVIFPH 634 (661)
Q Consensus 574 ~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIeV~~~~ 634 (661)
...... .+|+.++|++||+++++|+ +++++.+++++|++ .+||+|||++|.+
T Consensus 230 -~~~~~~--------~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~tyR 287 (400)
T 2bfd_A 230 -TSEQYR--------GDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYR 287 (400)
T ss_dssp -GGGTCS--------SSTTGGGTGGGTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred -ccccCC--------CCCHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeee
Confidence 011111 2689999999999999997 68899999988886 6899999999965
No 28
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=99.63 E-value=4.6e-16 Score=166.18 Aligned_cols=118 Identities=22% Similarity=0.272 Sum_probs=91.3
Q ss_pred CCcccchHHHHHHhhh----hCCCCcEEEEECCcccccC-hHH-HHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccc
Q 048725 501 LGAMGFGLPAAIGAAV----ANPDAIIVDIDGDGSFIMN-VQE-LATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANR 574 (661)
Q Consensus 501 ~g~mG~~lpaAiGaal----a~p~~~vv~i~GDGsf~~~-~~e-L~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~ 574 (661)
.|++|.++|.|+|+++ +.++++||+++|||+|+++ ++| |.+|.++++|+++||.||+ |+|.....
T Consensus 143 ~g~lG~~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~-~gi~~~~~-------- 213 (367)
T 1umd_A 143 ASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNF-YAISVDYR-------- 213 (367)
T ss_dssp CSSTTTTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECS-EETTEEHH--------
T ss_pred CchhhhhhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCC-eeeccChh--------
Confidence 3566666655555555 4688999999999999998 899 9999999999888888888 99852111
Q ss_pred cccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHH------HHHHHHHHhCCCcEEEEEEeCCCCC
Q 048725 575 AHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADL------RAAIQTMLDTPGPYLLDVIFPHQEH 637 (661)
Q Consensus 575 ~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el------~~al~~a~~~~gp~lIeV~~~~~~~ 637 (661)
.... .+||.++|++||+++++|+..+.+ +.+++++.+.+||+||||+|.+...
T Consensus 214 --~~~~--------~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~~t~r~~G 272 (367)
T 1umd_A 214 --HQTH--------SPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGP 272 (367)
T ss_dssp --HHCS--------SSCSGGGGGGTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSC
T ss_pred --hccC--------CCCHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeecCCC
Confidence 0011 168999999999999999876665 5566666667899999999987653
No 29
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=99.62 E-value=3.4e-16 Score=168.89 Aligned_cols=163 Identities=20% Similarity=0.205 Sum_probs=125.1
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHc---CCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhh
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTR---SNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGA 163 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~---~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~ 163 (661)
.|+|++++++.+.+.|++.+|||||+.+.++.+.|.+ ..+++++.+.||.+|+.||.|++++++| +|+.|+|||+
T Consensus 22 ~~~GneAva~~~~~ag~~~v~~yPgtP~t~i~~~l~~~~~~~g~~~i~~e~E~~a~~~a~Gaa~aG~r--~~~~ts~~G~ 99 (395)
T 1yd7_A 22 FIQGDEAIARAAILAGCRFYAGYPITPASEIFEAMALYMPLVDGVVIQMEDEIASIAAAIGASWAGAK--AMTATSGPGF 99 (395)
T ss_dssp EEEHHHHHHHHHHHHTCCEEEECCBTTTBCHHHHHHHHGGGGTCEEEECSCHHHHHHHHHHHHHTTCC--EEEEEETTHH
T ss_pred EeEHHHHHHHHHHHcCCCEEEEEECcchHHHHHHHHHhhhhcCcEEEEeCCHHHHHHHHHHHHHhCCc--EEEEeCchHH
Confidence 4789999999999999999999999999999999875 2359999999999999999999999999 4447999999
Q ss_pred HHHHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCC-CHHHH--hh--cccccccccCCcCcHHHHHHHHHHHhhcCCC
Q 048725 164 TNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQET-PIVEV--TR--SITKHNYLVLDVDDIPRIVREAFLLATSGRP 238 (661)
Q Consensus 164 ~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~-~~~~~--~~--~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~ 238 (661)
++++.+|..+...++|+|+++++++....|...+++. |.... .. ++.++.+.+.+++++..++..||++|...+
T Consensus 100 ~~~~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~~~~~sd~~~~~~~~~g~~g~~vl~p~~~qea~~l~~~A~~lA~~~~- 178 (395)
T 1yd7_A 100 SLMQENIGYAVMTETPVVIVDVQRSGPSTGQPTLPAQGDIMQAIWGTHGDHSLIVLSPSTVQEAFDFTIRAFNLSEKYR- 178 (395)
T ss_dssp HHHTTTCC----CCCCEEEEEEC--------------------------CCCCEEECCCSHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCcccchhHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHHHHHHHHHC-
Confidence 9999999999999999999999988665443333333 22111 22 456777788899999999999999999877
Q ss_pred ceEEEEeccchhhh
Q 048725 239 GPVLIDVPKDIQQQ 252 (661)
Q Consensus 239 GPV~I~iP~dv~~~ 252 (661)
.||.+.+|.++.+.
T Consensus 179 ~PVi~~~~~~l~h~ 192 (395)
T 1yd7_A 179 TPVILLTDAEVGHM 192 (395)
T ss_dssp SEEEEEECHHHHHC
T ss_pred CCEEEEcchhHhCe
Confidence 89999999997654
No 30
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=99.62 E-value=4.6e-16 Score=177.79 Aligned_cols=140 Identities=21% Similarity=0.295 Sum_probs=97.7
Q ss_pred cCCCCcccchHHHHHHhhhh----CCCCcEEEEECCcccc--cChHHHHHHHHcCCCeEEEEEeCCcchhHHHHH--HHh
Q 048725 498 SGGLGAMGFGLPAAIGAAVA----NPDAIIVDIDGDGSFI--MNVQELATIKVEKLPIKILLLNNQHLGMVMQWE--DRF 569 (661)
Q Consensus 498 ~~~~g~mG~~lpaAiGaala----~p~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~--~~~ 569 (661)
..+.|+||+++|+|+|+|+| .++++|||++|||+|+ |.+++|.+|.++++|+++| +||++|+|....+ ...
T Consensus 119 ~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli~I-vnnN~~~i~~~~~~~~~~ 197 (629)
T 2o1x_A 119 AITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAALNTIGDMGRKMLIV-LNDNEMSISENVGAMNKF 197 (629)
T ss_dssp CSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHHCCSEEEE-EEECSBSSSBCCSSHHHH
T ss_pred CcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHHHHHHhhCCCEEEE-EECCCCCCCCChhHHHHH
Confidence 45679999999999999999 4899999999999999 6789999999999998655 5666898743211 000
Q ss_pred hc----ccccc----------cccCCCCCc-ccCCccH-------H--HHHhHcCCCEe-eeC--CHHHHHHHHHHHHhC
Q 048725 570 YK----ANRAH----------TYLGDPSRE-SEIFPNM-------L--KFAEACGIPGA-QVT--RKADLRAAIQTMLDT 622 (661)
Q Consensus 570 ~~----~~~~~----------~~~g~p~~~-~~~~~d~-------~--~~A~a~G~~~~-~v~--~~~el~~al~~a~~~ 622 (661)
+. ..... ..++.+... .....|+ . +++++||+++. +|+ +.++|.++|+++.+.
T Consensus 198 ~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~p~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~~ 277 (629)
T 2o1x_A 198 MRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFFDPASVNPFAAMGVRYVGPVDGHNVQELVWLLERLVDL 277 (629)
T ss_dssp C---------------------------------------------CCCTTGGGTCEEEEEEESSCHHHHHHHHHHHTTS
T ss_pred HHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhhcCcccchHHHhcCCeEEeeECCcCHHHHHHHHHHHHhc
Confidence 00 00000 001111000 0000143 3 79999999998 885 999999999999988
Q ss_pred CCcEEEEEEeCCCCCc
Q 048725 623 PGPYLLDVIFPHQEHV 638 (661)
Q Consensus 623 ~gp~lIeV~~~~~~~~ 638 (661)
+||+||||+|.+....
T Consensus 278 ~~P~lI~v~t~kg~G~ 293 (629)
T 2o1x_A 278 DGPTILHIVTTKGKGL 293 (629)
T ss_dssp SSEEEEEEECCTTTTC
T ss_pred CCCEEEEEEEecCCCC
Confidence 9999999999876543
No 31
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=99.59 E-value=2.3e-15 Score=161.96 Aligned_cols=120 Identities=20% Similarity=0.196 Sum_probs=96.6
Q ss_pred CCCcccchHHHHHHhhhhC----CCCcEEEEECCcccccC--hHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhccc
Q 048725 500 GLGAMGFGLPAAIGAAVAN----PDAIIVDIDGDGSFIMN--VQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKAN 573 (661)
Q Consensus 500 ~~g~mG~~lpaAiGaala~----p~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~ 573 (661)
+.|+||+++|.|+|+++|. +++.|||++|||+|.++ .++|++|+++++|+++||.|| +|++....
T Consensus 179 ~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN-~~gi~~~~-------- 249 (407)
T 1qs0_A 179 ISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNN-QWAISTFQ-------- 249 (407)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEEC-SEETTEEG--------
T ss_pred cccccccchhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHHHHHHHHCcCEEEEEECC-Ccceeecc--------
Confidence 4589999999999999985 58899999999999986 578999999999966666555 69985210
Q ss_pred ccccccCCCCCcccCCccHHHHHhHcCCCEeeeC--CHHHHHHHHHHHHh----CCCcEEEEEEeCCCCC
Q 048725 574 RAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVT--RKADLRAAIQTMLD----TPGPYLLDVIFPHQEH 637 (661)
Q Consensus 574 ~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIeV~~~~~~~ 637 (661)
....+ ..+||.++|++||+++++|+ +++++.+++++|++ .+||+|||++|.+...
T Consensus 250 --~~~~~-------~~~d~a~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~G 310 (407)
T 1qs0_A 250 --AIAGG-------ESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGP 310 (407)
T ss_dssp --GGGTT-------TTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSC
T ss_pred --ccccC-------CCCCHHHHHHHcCCeEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCC
Confidence 11110 02699999999999999997 67788888888875 5899999999987664
No 32
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=99.58 E-value=8.5e-16 Score=174.16 Aligned_cols=119 Identities=19% Similarity=0.239 Sum_probs=103.9
Q ss_pred CCcccchHHHHHHhhhhCC-----------CCcEEEEECCcccc--cChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHH
Q 048725 501 LGAMGFGLPAAIGAAVANP-----------DAIIVDIDGDGSFI--MNVQELATIKVEKLPIKILLLNNQHLGMVMQWED 567 (661)
Q Consensus 501 ~g~mG~~lpaAiGaala~p-----------~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~ 567 (661)
.|+||+++|+|+|+|+|.+ +++|+|++|||+|+ |++++|.+|.++++|.+++|+||++|+|....
T Consensus 113 tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~Eal~~A~~~~L~~livi~nnN~~~i~~~~-- 190 (632)
T 3l84_A 113 TGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNISIEGDV-- 190 (632)
T ss_dssp CCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEG--
T ss_pred CcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhccHHHHHHHHHHcCCCcEEEEEECCCcccccch--
Confidence 4899999999999999986 89999999999999 78999999999999999999999999884211
Q ss_pred HhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeC--CHHHHHHHHHHHHhCCCcEEEEEEeCCCCCc
Q 048725 568 RFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVT--RKADLRAAIQTMLDTPGPYLLDVIFPHQEHV 638 (661)
Q Consensus 568 ~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~~~gp~lIeV~~~~~~~~ 638 (661)
...+ ..|+.+++++||+++.+|+ +.++|.++|+++.+.++|+||+|+|.+....
T Consensus 191 --------~~~~---------~~d~~~~~~a~G~~~~~vdGhd~~~l~~al~~A~~~~~P~lI~v~T~kG~G~ 246 (632)
T 3l84_A 191 --------GLAF---------NENVKMRFEAQGFEVLSINGHDYEEINKALEQAKKSTKPCLIIAKTTIAKGA 246 (632)
T ss_dssp --------GGTC---------CCCHHHHHHHTTCEEEEEETTCHHHHHHHHHHHHTCSSCEEEEEECCTTTTC
T ss_pred --------hhhc---------ChhHHHHHHHcCCeEEEEeeCCHHHHHHHHHHHHhCCCCEEEEEeeEeeecC
Confidence 1111 1699999999999999996 8999999999999989999999999876644
No 33
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=99.58 E-value=9.5e-15 Score=166.76 Aligned_cols=139 Identities=17% Similarity=0.201 Sum_probs=93.2
Q ss_pred CCCcccchHHHHHHhhhhC----CCCcEEEEECCcccc--cChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHH--hhc
Q 048725 500 GLGAMGFGLPAAIGAAVAN----PDAIIVDIDGDGSFI--MNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDR--FYK 571 (661)
Q Consensus 500 ~~g~mG~~lpaAiGaala~----p~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~--~~~ 571 (661)
+.|+||+++|+|+|+|+|. ++++|||++|||+|+ |.+++|.+|.++++|+++| +||++|++....+.. .+.
T Consensus 119 ~~G~~G~gl~~A~G~AlA~~~~~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli~v-vnnN~~~i~~~~~~~~~~~~ 197 (621)
T 2o1s_A 119 SVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMAFEAMNHAGDIRPDMLVI-LNDNEMSISENVGALNNHLA 197 (621)
T ss_dssp CCSSSSCHHHHHHHHHHHHHHHTSCCCEEEEEETTGGGSHHHHHHHHHHHHHCCSEEEE-EEECC---------------
T ss_pred CCcccchHHHHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHHHHHHhhCCCEEEE-EeCCCcccCCCcchHHHHHH
Confidence 4689999999999999985 789999999999999 5678999999999998755 566689987654421 110
Q ss_pred c----ccc-------ccccC-CCC--CcccCCccH-------HHHHhHcCCCEe-ee--CCHHHHHHHHHHHHhCCCcEE
Q 048725 572 A----NRA-------HTYLG-DPS--RESEIFPNM-------LKFAEACGIPGA-QV--TRKADLRAAIQTMLDTPGPYL 627 (661)
Q Consensus 572 ~----~~~-------~~~~g-~p~--~~~~~~~d~-------~~~A~a~G~~~~-~v--~~~~el~~al~~a~~~~gp~l 627 (661)
. ... ..... .|. .......|| .+++++||+++. +| ++.++|.++|+++.+.+||+|
T Consensus 198 ~~~~~~~y~~~~~~~~~~~~~~p~~~~~~~r~~~~~~~~~~p~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~~~gP~l 277 (621)
T 2o1s_A 198 QLLSGKLYSSLREGGKKVFSGVPPIKELLKRTEEHIKGMVVPGTLFEELGFNYIGPVDGHDVLGLITTLKNMRDLKGPQF 277 (621)
T ss_dssp -----------------------------------------CHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHSCSEEE
T ss_pred hhhcchhHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccChhhHHHHCCCeEeeeeCCCCHHHHHHHHHHHHHcCCCEE
Confidence 0 000 00000 000 000000133 689999999998 88 599999999999999999999
Q ss_pred EEEEeCCCCCcC
Q 048725 628 LDVIFPHQEHVL 639 (661)
Q Consensus 628 IeV~~~~~~~~~ 639 (661)
|||+|.+.....
T Consensus 278 I~v~t~kg~G~~ 289 (621)
T 2o1s_A 278 LHIMTKKGRGYE 289 (621)
T ss_dssp EEEECCCTTCCC
T ss_pred EEEEEecccCCC
Confidence 999998766543
No 34
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=99.58 E-value=1.5e-15 Score=173.16 Aligned_cols=120 Identities=16% Similarity=0.152 Sum_probs=100.1
Q ss_pred CCCcccchHHHHHHhhhhCC--------------CCcEEEEECCcccc--cChHHHHHHHHcCCCeEEEEEeCCcchhHH
Q 048725 500 GLGAMGFGLPAAIGAAVANP--------------DAIIVDIDGDGSFI--MNVQELATIKVEKLPIKILLLNNQHLGMVM 563 (661)
Q Consensus 500 ~~g~mG~~lpaAiGaala~p--------------~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~ 563 (661)
..|+||+++|+|+|+|+|.+ +++|+|++|||+++ |++++|.+|.+++||.+++|+||++|+|..
T Consensus 114 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livi~dnN~~~i~~ 193 (663)
T 3kom_A 114 TTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLVAFWDDNNISIDG 193 (663)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECC-----
T ss_pred CCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhhhchHHHHHHHHHHhCCCeEEEEEECCCccccc
Confidence 45899999999999999976 78999999999998 578999999999999999999999998853
Q ss_pred HHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEe-eeC--CHHHHHHHHHHHHh-CCCcEEEEEEeCCCCCc
Q 048725 564 QWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGA-QVT--RKADLRAAIQTMLD-TPGPYLLDVIFPHQEHV 638 (661)
Q Consensus 564 ~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~-~v~--~~~el~~al~~a~~-~~gp~lIeV~~~~~~~~ 638 (661)
..+ ..+ ..|+.+++++||+++. +|+ +.++|.++|+++.+ .++|+||||+|.+....
T Consensus 194 ~~~----------~~~---------~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~A~~~~~~P~lI~~~T~kg~G~ 253 (663)
T 3kom_A 194 DTK----------GWF---------SDNTPERFRAYGWHVIENVDGHDFVAIEKAINEAHSQQQKPTLICCKTVIGFGS 253 (663)
T ss_dssp CGG----------GTC---------CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHCSSSCEEEEEECCTTTTC
T ss_pred chh----------hhc---------chhHHHHHHHCCCeEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEEeccccccc
Confidence 211 111 1699999999999999 885 89999999999998 69999999999877644
No 35
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=99.57 E-value=1.2e-15 Score=174.80 Aligned_cols=119 Identities=21% Similarity=0.222 Sum_probs=98.8
Q ss_pred CCcccchHHHHHHhhhhCC--------------CCcEEEEECCcccc--cChHHHHHHHHcCCCeEEEEEeCCcchhHHH
Q 048725 501 LGAMGFGLPAAIGAAVANP--------------DAIIVDIDGDGSFI--MNVQELATIKVEKLPIKILLLNNQHLGMVMQ 564 (661)
Q Consensus 501 ~g~mG~~lpaAiGaala~p--------------~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~ 564 (661)
.|+||+++|+|+|+|+|.+ +++|||++|||+|+ |++++|.+|.++++|.+|+|+||++|+|...
T Consensus 154 tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~~ 233 (711)
T 3uk1_A 154 TGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNGISIDGD 233 (711)
T ss_dssp CCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEE
T ss_pred ccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccHHHHHHHHHHhCCCcEEEEEECCCcccccc
Confidence 4899999999999999976 78999999999999 5789999999999999999999999987421
Q ss_pred HHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEee-e--CCHHHHHHHHHHHHhCCCcEEEEEEeCCCCCc
Q 048725 565 WEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQ-V--TRKADLRAAIQTMLDTPGPYLLDVIFPHQEHV 638 (661)
Q Consensus 565 ~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~-v--~~~~el~~al~~a~~~~gp~lIeV~~~~~~~~ 638 (661)
. ...+ ..|+.+++++||+++.+ | ++.++|.++|+++.+.++|+||||+|.+....
T Consensus 234 ~----------~~~~---------~~d~~~~~~a~G~~~~~~vdG~d~~~l~~Al~~A~~~~~P~lI~v~T~kG~G~ 291 (711)
T 3uk1_A 234 V----------VNWF---------HDDTPKRFEAYGWNVIPNVNGHDVDAIDAAIAKAKRSDKPSLICCKTRIGNGA 291 (711)
T ss_dssp G----------GGTC---------CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHTTCSSCEEEEEEC------
T ss_pred h----------hhhc---------CCCHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEEccccccCC
Confidence 1 1111 16999999999999998 6 48999999999999889999999999876643
No 36
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=99.56 E-value=3.9e-15 Score=169.07 Aligned_cols=119 Identities=22% Similarity=0.171 Sum_probs=100.1
Q ss_pred CCCcccchHHHHHHhhhhCC-----CCcEEEEECCcccc--cChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcc
Q 048725 500 GLGAMGFGLPAAIGAAVANP-----DAIIVDIDGDGSFI--MNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKA 572 (661)
Q Consensus 500 ~~g~mG~~lpaAiGaala~p-----~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~ 572 (661)
+.|+||+++|+|+|+|+|.+ +++|||++|||+|+ |++++|.+|.++++|.+++|+||++|++..
T Consensus 119 ~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~eG~~~Eal~~A~~~~l~~livi~nnN~~~i~~--------- 189 (616)
T 3mos_A 119 ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSD--------- 189 (616)
T ss_dssp CCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSS---------
T ss_pred cccccCCccHHHHHHHHHHHHhCCCCCEEEEEECccccccCcHHHHHHHHHHcCCCcEEEEEECCCCCCcC---------
Confidence 45899999999999999965 68999999999999 789999999999999999999999998731
Q ss_pred cccccccCCCCCcccCCccHHHHHhHcCCCEeeeC--CHHHHHHHHHHHHhCCCcEEEEEEeCCCCCc
Q 048725 573 NRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVT--RKADLRAAIQTMLDTPGPYLLDVIFPHQEHV 638 (661)
Q Consensus 573 ~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~~~gp~lIeV~~~~~~~~ 638 (661)
. ..... ...||.+++++||+++.+|+ +.++|.++|+++ .++|+||||+|.+....
T Consensus 190 ~-~~~~~--------~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~~--~~~P~lI~v~T~kg~G~ 246 (616)
T 3mos_A 190 P-APLQH--------QMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA--KHQPTAIIAKTFKGRGI 246 (616)
T ss_dssp B-CTTTT--------CHHHHHHHHHHTTCEEEEEETTCHHHHHHHHHSC--CSSCEEEEEECCTTTTS
T ss_pred C-ccccc--------ChHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhc--CCCCEEEEEEEeccccc
Confidence 1 00000 11589999999999999994 899999999776 68999999999877643
No 37
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=99.56 E-value=2.3e-15 Score=172.07 Aligned_cols=120 Identities=18% Similarity=0.227 Sum_probs=103.9
Q ss_pred CCCcccchHHHHHHhhhhCC--------------CCcEEEEECCcccc--cChHHHHHHHHcCCCeEEEEEeCCcchhHH
Q 048725 500 GLGAMGFGLPAAIGAAVANP--------------DAIIVDIDGDGSFI--MNVQELATIKVEKLPIKILLLNNQHLGMVM 563 (661)
Q Consensus 500 ~~g~mG~~lpaAiGaala~p--------------~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~ 563 (661)
..|+||+++|+|+|+|+|.+ +++|+|++|||+++ |++++|.+|.++++|.+++|+||++|++..
T Consensus 138 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~ 217 (690)
T 3m49_A 138 TTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDISLDG 217 (690)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSS
T ss_pred CCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhhhccHHHHHHHHHHhCCCeEEEEEECCCeeccc
Confidence 34899999999999999976 88999999999999 578999999999999999999999998852
Q ss_pred HHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeee---CCHHHHHHHHHHHHh-CCCcEEEEEEeCCCCCc
Q 048725 564 QWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQV---TRKADLRAAIQTMLD-TPGPYLLDVIFPHQEHV 638 (661)
Q Consensus 564 ~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v---~~~~el~~al~~a~~-~~gp~lIeV~~~~~~~~ 638 (661)
.. ...+ ..|+.+++++||+++.+| ++.++|.++|+++.+ .++|+||+|+|.+....
T Consensus 218 ~~----------~~~~---------~~d~~~~~~a~G~~~~~v~DG~d~~~l~~Al~~a~~~~~~P~lI~v~T~kG~G~ 277 (690)
T 3m49_A 218 DL----------NRSF---------SESVEDRYKAYGWQVIRVEDGNDIEAIAKAIEEAKADEKRPTLIEVRTTIGFGS 277 (690)
T ss_dssp BG----------GGTC---------CCCHHHHHHHHTCEEEEESCTTCHHHHHHHHHHHHHCCSSCEEEEEECCTTTTC
T ss_pred ch----------hhcc---------chhHHHHHHHcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCEEEEEEeeccccc
Confidence 11 1111 259999999999999999 799999999999998 78999999999877654
No 38
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=99.55 E-value=7e-15 Score=156.15 Aligned_cols=117 Identities=26% Similarity=0.332 Sum_probs=94.7
Q ss_pred CCCCcccchHHHHHHhhhhCC----CCcEEEEECCcccccC--hHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcc
Q 048725 499 GGLGAMGFGLPAAIGAAVANP----DAIIVDIDGDGSFIMN--VQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKA 572 (661)
Q Consensus 499 ~~~g~mG~~lpaAiGaala~p----~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~ 572 (661)
++.|+||+++|.|+|+++|.+ ++.|||++|||++.+. ..+|.+|..+++|+++||.|| +|++......
T Consensus 137 ~~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn~A~~~~lpvi~vv~NN-~~g~~t~~~~----- 210 (365)
T 2ozl_A 137 GGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENN-RYGMGTSVER----- 210 (365)
T ss_dssp CCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEEC-SEETTEEHHH-----
T ss_pred CCcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHHHHHHHHCcCEEEEEECC-CcccCCCccc-----
Confidence 355899999999999999974 8899999999999985 567999999999988888777 5998532111
Q ss_pred cccccccCCCCCcccCCccHHHHHhHcCCCEeeeC--CHHHHHHHHHHHHh----CCCcEEEEEEeCCCC
Q 048725 573 NRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVT--RKADLRAAIQTMLD----TPGPYLLDVIFPHQE 636 (661)
Q Consensus 573 ~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIeV~~~~~~ 636 (661)
.... +||.+ +++|+++++|+ +++++..++++|++ .+||+|||++|.+..
T Consensus 211 -----~~~~--------~~~~~--ra~g~p~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R~~ 265 (365)
T 2ozl_A 211 -----AAAS--------TDYYK--RGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYH 265 (365)
T ss_dssp -----HCSC--------CCGGG--TTTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSS
T ss_pred -----ccCC--------CCHHH--HhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCC
Confidence 0011 46765 79999999997 79999999988874 689999999998654
No 39
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=99.54 E-value=7.4e-15 Score=168.09 Aligned_cols=119 Identities=18% Similarity=0.179 Sum_probs=102.7
Q ss_pred CCCcccchHHHHHHhhhhC--------------CCCcEEEEECCcccc--cChHHHHHHHHcCCCeEEEEEeCCcchhHH
Q 048725 500 GLGAMGFGLPAAIGAAVAN--------------PDAIIVDIDGDGSFI--MNVQELATIKVEKLPIKILLLNNQHLGMVM 563 (661)
Q Consensus 500 ~~g~mG~~lpaAiGaala~--------------p~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~ 563 (661)
+.|+||+++|+|+|+|+|. ++++|+|++|||+++ |++++|.+|.++++|.+++|+||++|++..
T Consensus 116 ~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~ 195 (651)
T 2e6k_A 116 TTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGEAASLAGHWGLSKLIVFWDDNRISIDG 195 (651)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECCEETTE
T ss_pred ccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhchhHHHHHHHHHHHcCCCeEEEEEECCCccccc
Confidence 4589999999999999985 378999999999999 678999999999999999999999999852
Q ss_pred HHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEe-eeC--CHHHHHHHHHHHHhCCCcEEEEEEeCCCCC
Q 048725 564 QWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGA-QVT--RKADLRAAIQTMLDTPGPYLLDVIFPHQEH 637 (661)
Q Consensus 564 ~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~-~v~--~~~el~~al~~a~~~~gp~lIeV~~~~~~~ 637 (661)
. ....+ ..|+.+++++||+++. +|+ +.+++.++++++.+.++|+||||+|.+...
T Consensus 196 ~----------~~~~~---------~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~~~~P~lI~~~t~kg~G 253 (651)
T 2e6k_A 196 P----------TDLAF---------TEDVLARYRAYGWQTLRVEDVNDLEALRKAIKLAKLDERPTLIAVRSHIGFG 253 (651)
T ss_dssp E----------GGGTC---------CSCHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHHSSSCEEEEEECCTTTT
T ss_pred c----------ccccc---------CccHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEEEeEeccc
Confidence 1 01111 1699999999999999 887 999999999999988999999999987653
No 40
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.54 E-value=1.1e-14 Score=167.18 Aligned_cols=120 Identities=23% Similarity=0.216 Sum_probs=103.6
Q ss_pred CCCcccchHHHHHHhhhhC--------------CCCcEEEEECCcccc--cChHHHHHHHHcCCCeEEEEEeCCcchhHH
Q 048725 500 GLGAMGFGLPAAIGAAVAN--------------PDAIIVDIDGDGSFI--MNVQELATIKVEKLPIKILLLNNQHLGMVM 563 (661)
Q Consensus 500 ~~g~mG~~lpaAiGaala~--------------p~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~ 563 (661)
+.|+||+++|+|+|+|+|. ++++|||++|||+++ |++++|.+|.+++|+.+++|+||++|+|..
T Consensus 125 ~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~ 204 (675)
T 1itz_A 125 TTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDG 204 (675)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTE
T ss_pred CCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEEEEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCccCCC
Confidence 4589999999999999996 688999999999999 789999999999999899999999999841
Q ss_pred HHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEe-eeC---CHHHHHHHHHHHHh-CCCcEEEEEEeCCCCCc
Q 048725 564 QWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGA-QVT---RKADLRAAIQTMLD-TPGPYLLDVIFPHQEHV 638 (661)
Q Consensus 564 ~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~-~v~---~~~el~~al~~a~~-~~gp~lIeV~~~~~~~~ 638 (661)
. ....+ ..|+.+++++||+++. +|+ +.++|.++++++.+ .++|+||||+|.+....
T Consensus 205 ~----------~~~~~---------~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~G~ 265 (675)
T 1itz_A 205 D----------TEIAF---------TEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIKVTTTIGFGS 265 (675)
T ss_dssp E----------GGGTC---------CSCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHCCSSCEEEEEECCTTTTC
T ss_pred C----------hhhhc---------ChhHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHHCCCCeEEEEEeeecccCc
Confidence 1 11111 1699999999999998 887 99999999999997 68999999999887654
No 41
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=99.54 E-value=4.2e-15 Score=170.64 Aligned_cols=121 Identities=19% Similarity=0.214 Sum_probs=103.7
Q ss_pred CCCCcccchHHHHHHhhhhCC--------------CCcEEEEECCcccc--cChHHHHHHHHcCCCeEEEEEeCCcchhH
Q 048725 499 GGLGAMGFGLPAAIGAAVANP--------------DAIIVDIDGDGSFI--MNVQELATIKVEKLPIKILLLNNQHLGMV 562 (661)
Q Consensus 499 ~~~g~mG~~lpaAiGaala~p--------------~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpv~ivV~NN~g~g~~ 562 (661)
.+.|+||+++|+|+|+|+|.+ +++|||++|||+++ |++++|.+|.++++|.+++|+||++|++.
T Consensus 111 ~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~ 190 (669)
T 2r8o_A 111 TTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISID 190 (669)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETT
T ss_pred cccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhcchHHHHHHHHHHHcCCCcEEEEEECCCcEec
Confidence 345899999999999999965 78999999999999 67899999999999999999999999984
Q ss_pred HHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEe-eeC--CHHHHHHHHHHHHh-CCCcEEEEEEeCCCCCc
Q 048725 563 MQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGA-QVT--RKADLRAAIQTMLD-TPGPYLLDVIFPHQEHV 638 (661)
Q Consensus 563 ~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~-~v~--~~~el~~al~~a~~-~~gp~lIeV~~~~~~~~ 638 (661)
.. ....+ ..|+.+++++||+++. +|+ +.++|.++++++.+ .++|+||||+|.+....
T Consensus 191 ~~----------~~~~~---------~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~G~ 251 (669)
T 2r8o_A 191 GH----------VEGWF---------TDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARAVTDKPSLLMCKTIIGFGS 251 (669)
T ss_dssp EE----------GGGTC---------CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHCCSSCEEEEEECCTTTTC
T ss_pred cc----------ccccc---------CccHHHHHHHCCCeEEeEECCCCHHHHHHHHHHHHhcCCCCEEEEEEeEeccCc
Confidence 21 01011 1599999999999999 887 99999999999998 68999999999987754
No 42
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=99.52 E-value=7.1e-15 Score=168.90 Aligned_cols=119 Identities=19% Similarity=0.171 Sum_probs=102.4
Q ss_pred CCCcccchHHHHHHhhhhCC--------------CCcEEEEECCcccc--cChHHHHHHHHcCCCeEEEEEeCCcchhHH
Q 048725 500 GLGAMGFGLPAAIGAAVANP--------------DAIIVDIDGDGSFI--MNVQELATIKVEKLPIKILLLNNQHLGMVM 563 (661)
Q Consensus 500 ~~g~mG~~lpaAiGaala~p--------------~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~ 563 (661)
+.|+||+++|+|+|+|+|.+ +++|||++|||+++ |++++|.+|.++++|.+++|+||++|++..
T Consensus 114 ~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~ 193 (680)
T 1gpu_A 114 TTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITIDG 193 (680)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTE
T ss_pred ccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccchhhHHHHHHHHHHhCCCcEEEEEECCCceEec
Confidence 34899999999999999854 78999999999999 778999999999999899999999999852
Q ss_pred HHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEe-eeC---CHHHHHHHHHHHHh-CCCcEEEEEEeCCCCC
Q 048725 564 QWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGA-QVT---RKADLRAAIQTMLD-TPGPYLLDVIFPHQEH 637 (661)
Q Consensus 564 ~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~-~v~---~~~el~~al~~a~~-~~gp~lIeV~~~~~~~ 637 (661)
. ....+ ..|+.+++++||+++. +|+ +.+++.++++++.+ .++|+||||+|.+...
T Consensus 194 ~----------~~~~~---------~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~A~~~~~~P~lI~~~T~kg~G 253 (680)
T 1gpu_A 194 A----------TSISF---------DEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIKMTTTIGYG 253 (680)
T ss_dssp E----------GGGTC---------CCCHHHHHHHHTCEEEEESCTTTCHHHHHHHHHHHHHCTTSCEEEEEECCTTTT
T ss_pred c----------ccccc---------CccHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHCCCCCEEEEEEeecccc
Confidence 1 01011 1699999999999999 888 99999999999998 6899999999987653
No 43
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.45 E-value=1.1e-13 Score=158.69 Aligned_cols=119 Identities=18% Similarity=0.155 Sum_probs=101.2
Q ss_pred CCCcccchHHHHHHhhhhCC--------------CCcEEEEECCcccccC--hHHHHHHHHcCCCeEEEEEeCCcchhHH
Q 048725 500 GLGAMGFGLPAAIGAAVANP--------------DAIIVDIDGDGSFIMN--VQELATIKVEKLPIKILLLNNQHLGMVM 563 (661)
Q Consensus 500 ~~g~mG~~lpaAiGaala~p--------------~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~g~g~~~ 563 (661)
+.|+||+++|.|+|+|+|.+ +++|+|++|||++++. +++|.+|.+++||.+++|+||++|++..
T Consensus 114 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~d~N~~~i~~ 193 (673)
T 1r9j_A 114 TTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYISIDG 193 (673)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECSBCSSS
T ss_pred ccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccHHHHHHHHHHHhCCCcEEEEEECCCCcccc
Confidence 35899999999999999853 7899999999999964 7889999999999888999999998741
Q ss_pred HHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEe-ee---CCHHHHHHHHHHHHh-CCCcEEEEEEeCCCCC
Q 048725 564 QWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGA-QV---TRKADLRAAIQTMLD-TPGPYLLDVIFPHQEH 637 (661)
Q Consensus 564 ~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~-~v---~~~~el~~al~~a~~-~~gp~lIeV~~~~~~~ 637 (661)
. ....+ ..|+.+.+++||+++. +| ++.+++.++++++.+ .++|+||+++|.+...
T Consensus 194 ~----------~~~~~---------~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~Al~~A~~~~~~P~lI~~~T~kg~G 253 (673)
T 1r9j_A 194 S----------TSLSF---------TEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKATKGKPKMIVQTTTIGFG 253 (673)
T ss_dssp B----------GGGTC---------CCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHCCSSCEEEEEECCTTTT
T ss_pred c----------hhhcc---------CHhHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCCEEEEEecccccc
Confidence 1 01111 1599999999999999 88 789999999999987 7899999999987654
No 44
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=99.23 E-value=1.7e-11 Score=140.00 Aligned_cols=118 Identities=20% Similarity=0.238 Sum_probs=97.4
Q ss_pred CCcccchHHHHHHhhhhCC-----------------CCcEEEEECCcccccC--hHHHHHHHHcCCCeEEEEEeCCcchh
Q 048725 501 LGAMGFGLPAAIGAAVANP-----------------DAIIVDIDGDGSFIMN--VQELATIKVEKLPIKILLLNNQHLGM 561 (661)
Q Consensus 501 ~g~mG~~lpaAiGaala~p-----------------~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~g~g~ 561 (661)
.|++|.+++.|+|+|+|.+ +++|+|++|||+++.. ..++.+|.+++||-+|+|+||++|++
T Consensus 132 tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~si 211 (700)
T 3rim_A 132 TGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFYDRNQISI 211 (700)
T ss_dssp CCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEET
T ss_pred ccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCcccccChHHHHHHHHHHcCCCcEEEEEECCCccc
Confidence 4899999999999999742 6789999999999964 66799999999997777888888887
Q ss_pred HHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeee---CCHHHHHHHHHHHHh-CCCcEEEEEEeCCCCC
Q 048725 562 VMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQV---TRKADLRAAIQTMLD-TPGPYLLDVIFPHQEH 637 (661)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v---~~~~el~~al~~a~~-~~gp~lIeV~~~~~~~ 637 (661)
.. + ....+ ..|+.+.+++||+++.+| ++.+++.++++++.+ .++|+||+++|.+...
T Consensus 212 ~~---------~-~~~~~---------~~~~~~~~~a~G~~~~~V~DG~D~~al~~Al~~A~~~~~~P~lI~~~T~kG~G 272 (700)
T 3rim_A 212 ED---------D-TNIAL---------CEDTAARYRAYGWHVQEVEGGENVVGIEEAIANAQAVTDRPSFIALRTVIGYP 272 (700)
T ss_dssp TE---------E-GGGTC---------CCCHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHCCSSCEEEEEECCTTTT
T ss_pred cc---------c-hhhcc---------chhHHHHHHHcCCeEEEECCCCCHHHHHHHHHHHHHcCCCCEEEEEEEEeeec
Confidence 31 1 01011 158999999999999999 489999999999987 6899999999987654
No 45
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=99.09 E-value=5.3e-11 Score=138.82 Aligned_cols=120 Identities=16% Similarity=0.160 Sum_probs=96.3
Q ss_pred cCCCCcccchHHHHHHhhhhCC--------------CCcEEEEECCccc--ccChHH-HHHHHHcCCC---eEEEEEeCC
Q 048725 498 SGGLGAMGFGLPAAIGAAVANP--------------DAIIVDIDGDGSF--IMNVQE-LATIKVEKLP---IKILLLNNQ 557 (661)
Q Consensus 498 ~~~~g~mG~~lpaAiGaala~p--------------~~~vv~i~GDGsf--~~~~~e-L~ta~~~~lp---v~ivV~NN~ 557 (661)
..+-+.||+++|.|+|+++|.+ +..+||+.|||+| ++.+.| |.+|..+++| +++||.||
T Consensus 241 ~~n~s~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN- 319 (868)
T 2yic_A 241 TANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNN- 319 (868)
T ss_dssp CCCCSSTTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEEC-
T ss_pred cCCCccccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcC-
Confidence 4455899999999999999842 3579999999998 577888 9999999999 99999999
Q ss_pred cchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeC--CHHHHHHHHHHHHh----CCCcEEEEEE
Q 048725 558 HLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVT--RKADLRAAIQTMLD----TPGPYLLDVI 631 (661)
Q Consensus 558 g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIeV~ 631 (661)
+||+....+... .. .++.++|++||+++.+|+ +++++..++++|++ .+||+|||++
T Consensus 320 ~~g~st~~~~~~----------s~--------~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~ 381 (868)
T 2yic_A 320 QIGFTTAPTDSR----------SS--------EYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDML 381 (868)
T ss_dssp SCBTTBCHHHHC----------SS--------SSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CcccccCccccc----------cc--------cCHHHHHHhCCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 699863211100 00 356678999999999996 79999999988874 5899999999
Q ss_pred eCCCC
Q 048725 632 FPHQE 636 (661)
Q Consensus 632 ~~~~~ 636 (661)
|.+..
T Consensus 382 tyR~~ 386 (868)
T 2yic_A 382 CYRRR 386 (868)
T ss_dssp CCCCS
T ss_pred eecCC
Confidence 97654
No 46
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=98.96 E-value=3.7e-10 Score=134.96 Aligned_cols=119 Identities=17% Similarity=0.179 Sum_probs=94.6
Q ss_pred CCCCcccchHHHHHHhhhhCC--------------CCcEEEEECCccc--ccChHH-HHHHHHcCCC---eEEEEEeCCc
Q 048725 499 GGLGAMGFGLPAAIGAAVANP--------------DAIIVDIDGDGSF--IMNVQE-LATIKVEKLP---IKILLLNNQH 558 (661)
Q Consensus 499 ~~~g~mG~~lpaAiGaala~p--------------~~~vv~i~GDGsf--~~~~~e-L~ta~~~~lp---v~ivV~NN~g 558 (661)
.+.+.||.++|.|+|+++|.+ +..++|+.|||+| +..+.| |.+|..+++| +++||.|| +
T Consensus 487 ~n~s~Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN-~ 565 (1113)
T 2xt6_A 487 ANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNN-Q 565 (1113)
T ss_dssp CCCSSTTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEEC-S
T ss_pred CCCccccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeC-C
Confidence 345789999999999999842 3679999999998 677888 9999999998 99999988 5
Q ss_pred chhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeC--CHHHHHHHHHHHHh----CCCcEEEEEEe
Q 048725 559 LGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVT--RKADLRAAIQTMLD----TPGPYLLDVIF 632 (661)
Q Consensus 559 ~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIeV~~ 632 (661)
||+....... + .. .++.++|++||+++.+|+ +++++..++++|++ .+||+|||++|
T Consensus 566 ~gist~~~~~-----~-----s~--------~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~t 627 (1113)
T 2xt6_A 566 IGFTTAPTDS-----R-----SS--------EYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLC 627 (1113)
T ss_dssp CBTTBCHHHH-----C-----SS--------SSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred cccccCcccc-----c-----cc--------cCHHHHHHhcCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEe
Confidence 8885321100 0 00 245568999999999997 99999999988875 58999999999
Q ss_pred CCCC
Q 048725 633 PHQE 636 (661)
Q Consensus 633 ~~~~ 636 (661)
-+..
T Consensus 628 yR~~ 631 (1113)
T 2xt6_A 628 YRRR 631 (1113)
T ss_dssp CCCS
T ss_pred EccC
Confidence 7654
No 47
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=98.88 E-value=1.7e-09 Score=126.88 Aligned_cols=118 Identities=20% Similarity=0.221 Sum_probs=87.5
Q ss_pred CCCCcccchHHHHHHhhhhCCC---------CcEEEEECCccc--ccChHH-HHHHHHcCCC---eEEEEEeCCcchhHH
Q 048725 499 GGLGAMGFGLPAAIGAAVANPD---------AIIVDIDGDGSF--IMNVQE-LATIKVEKLP---IKILLLNNQHLGMVM 563 (661)
Q Consensus 499 ~~~g~mG~~lpaAiGaala~p~---------~~vv~i~GDGsf--~~~~~e-L~ta~~~~lp---v~ivV~NN~g~g~~~ 563 (661)
.+-+.+|.++|.|+|+++|.+. ..|||++|||+| +....| |.+|..+++| +++||.||+ |++..
T Consensus 318 ~~~shlg~~~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~-~~ist 396 (933)
T 2jgd_A 318 FNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQ-VGFTT 396 (933)
T ss_dssp CCCSSTTCHHHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC------
T ss_pred ccCcccccccCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCC-ccccC
Confidence 3447889999999999998543 379999999998 566777 9999999999 898888887 88853
Q ss_pred -HHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeC--CHHHHHHHHHHHHh----CCCcEEEEEEeCCC
Q 048725 564 -QWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVT--RKADLRAAIQTMLD----TPGPYLLDVIFPHQ 635 (661)
Q Consensus 564 -~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIeV~~~~~ 635 (661)
..+.. .. ..++.++|++||+++.+|+ +++++..++++|.+ .++|+|||+++.+.
T Consensus 397 ~~~~~~----------~~--------~~~~~~~a~a~g~p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~ 457 (933)
T 2jgd_A 397 SNPLDA----------RS--------TPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRR 457 (933)
T ss_dssp ----------------------------CGGGGGGTTTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_pred CCHHhc----------cc--------chhHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeeee
Confidence 22110 00 1367778999999999995 58888888888774 57899999999753
No 48
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=98.88 E-value=3.6e-09 Score=123.69 Aligned_cols=122 Identities=17% Similarity=0.124 Sum_probs=96.3
Q ss_pred CCcccchHHHHHHhhhhC-----------CCCcEEEEECCcccc--cChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHH
Q 048725 501 LGAMGFGLPAAIGAAVAN-----------PDAIIVDIDGDGSFI--MNVQELATIKVEKLPIKILLLNNQHLGMVMQWED 567 (661)
Q Consensus 501 ~g~mG~~lpaAiGaala~-----------p~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~ 567 (661)
.|+||.++++|+|+|+++ ++++|||++|||++. +.+..|..|.+++|+-+++|+||+++.+-
T Consensus 191 tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~si~----- 265 (886)
T 2qtc_A 191 TVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLD----- 265 (886)
T ss_dssp CCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSS-----
T ss_pred ccccCccHHHHHHHHHHhhhhcccccccCCCCEEEEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCcccC-----
Confidence 489999999999999873 478999999999998 56888999999999877778888877652
Q ss_pred HhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeC----------------------------------------
Q 048725 568 RFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVT---------------------------------------- 607 (661)
Q Consensus 568 ~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~---------------------------------------- 607 (661)
.+ .-++ .....++.++.+++|++..+|.
T Consensus 266 ----~~----v~~~----~~~~~~l~~~~~~~G~~~~~v~~g~~~~~ll~~~~~~~l~~~~~~~~d~~~q~~~~~~g~~~ 333 (886)
T 2qtc_A 266 ----GP----VTGN----GKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYV 333 (886)
T ss_dssp ----SB----SCTT----SCHHHHHHHHHHHTTCEEEEECBCTTHHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHH
T ss_pred ----CC----cccc----ccccHHHHHHHHhCCCCEEEEecchhHHHHHccCCchHHHHHHHhccchhhhhhhhccchHH
Confidence 11 0010 0011378899999999998873
Q ss_pred -------------------------------CHHHHHHHHHHHHhC-CCcEEEEEEeCCCCCcC
Q 048725 608 -------------------------------RKADLRAAIQTMLDT-PGPYLLDVIFPHQEHVL 639 (661)
Q Consensus 608 -------------------------------~~~el~~al~~a~~~-~gp~lIeV~~~~~~~~~ 639 (661)
+.+++.++++++.+. ++|+||+++|.+.....
T Consensus 334 r~~~F~~~~~~~~l~~~~~d~~i~~l~~dGhD~~~l~~a~~~A~~~~~~PtlI~~~T~KG~G~~ 397 (886)
T 2qtc_A 334 REHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQETKGKATVILAHTIKGYGMG 397 (886)
T ss_dssp HHHTSTTSHHHHTTTTTCCHHHHHTCCBGGGCHHHHHHHHHHHHHCCSSCEEEEEECCTTTTCT
T ss_pred HHhhcccchHHHHHHhhcChhhHhhcccCCCCHHHHHHHHHHHHHcCCCCEEEEEeeeeccccc
Confidence 788999999999875 59999999998776543
No 49
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=98.14 E-value=1.2e-05 Score=97.48 Aligned_cols=155 Identities=12% Similarity=0.022 Sum_probs=116.3
Q ss_pred CCcHHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHHc-----CCC-----CeEEccCChhHHHHHHHHHHHHhCCcEEEE
Q 048725 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTR-----SNN-----IRNVLPRHEQGGIFAAEGYARSSGKPGICI 156 (661)
Q Consensus 87 ~~~gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~-----~~~-----i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~ 156 (661)
.|+|.++++... ..|++.+++||++++.++.+.|.+ ... ..++...+|.+|..||.|.+.+..|+.+
T Consensus 6 ~~~GNeAvA~~a-~ag~~~~~~YPITPstei~e~l~~~~~~g~~~~~G~~~~v~~~esE~aA~~aaiGAa~aGaR~~t-- 82 (1231)
T 2c42_A 6 TTDGNTATAHVA-YAMSEVAAIYPITPSSTMGEEADDWAAQGRKNIFGQTLTIREMQSEAGAAGAVHGALAAGALTTT-- 82 (1231)
T ss_dssp EEEHHHHHHHHH-HHHCSEEEECCCTTTHHHHHHHHHHHHHTCCCTTSCCCEEEECSSHHHHHHHHHHHHHTTCCEEE--
T ss_pred EccHHHHHHHHH-HHCCCEEEEECCCCchHHHHHHHHHHHcCCchhcCCceEEEecCChHHHHHHHHHHHHcCChHhh--
Confidence 378999999997 779999999999999999999952 122 3899999999999999998876665443
Q ss_pred EccchhhHHHHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHH-hhccccccc-ccCCcCcHHHHHHHHHHHhh
Q 048725 157 ATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEV-TRSITKHNY-LVLDVDDIPRIVREAFLLAT 234 (661)
Q Consensus 157 ~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~-~~~itk~~~-~v~~~~~i~~~i~~A~~~a~ 234 (661)
.|+|+|+.-+..++..+...++|+|+...+++....+... ..+|.+. +...+.|-. ...++.+...++..||+.|.
T Consensus 83 ~Ts~~Gl~lm~e~l~~~ag~~~P~Vi~va~R~g~~~glsi--~~~hsd~~~ar~~G~~vl~pss~QEa~dl~~~Af~lAe 160 (1231)
T 2c42_A 83 FTASQGLLLMIPNMYKISGELLPGVFHVTARAIAAHALSI--FGDHQDIYAARQTGFAMLASSSVQEAHDMALVAHLAAI 160 (1231)
T ss_dssp EECHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSSSBCC--SCCSHHHHTTTTSSCEEEECCSHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhCCCCCEEEEECCCCccCCCCcC--CCchhhHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHH
Confidence 4899999999999987777799999999988744222111 1122232 222233332 35678899999999999998
Q ss_pred cCCCceEEEEecc
Q 048725 235 SGRPGPVLIDVPK 247 (661)
Q Consensus 235 s~~~GPV~I~iP~ 247 (661)
.-+ -||.+....
T Consensus 161 k~~-~PVi~~~Dg 172 (1231)
T 2c42_A 161 ESN-VPFMHFFDG 172 (1231)
T ss_dssp HHC-CCEEEEEET
T ss_pred HcC-CCEEEEecC
Confidence 755 688766544
No 50
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=97.82 E-value=2.5e-05 Score=90.03 Aligned_cols=118 Identities=19% Similarity=0.203 Sum_probs=82.5
Q ss_pred CcccchHHHHHHhhhhCCCCcEEEEECCcccccC-hHHHHHH----HHcCCCeEEEEEeCCcchhHHHHHHHhhcccccc
Q 048725 502 GAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMN-VQELATI----KVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAH 576 (661)
Q Consensus 502 g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~-~~eL~ta----~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~ 576 (661)
|.+|+|++.|+|+++.+|+.+|+|++|||...-. +...|.+ ..+++.-+++|++++++.+- ..
T Consensus 175 G~LGqGls~AvG~A~~~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~N~~~i~---------g~--- 242 (845)
T 3ahc_A 175 GELGYALSHAYGAVMNNPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNGYKIA---------NP--- 242 (845)
T ss_dssp SSTTCHHHHHHHHHTTCTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEECSBSSS---------SB---
T ss_pred CCccchHhHHhhhhhcCCCCeEEEEECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEECCCCcCC---------CC---
Confidence 8999999999999999999999999999994321 1122222 24567778888888888762 11
Q ss_pred cccCCCCCcccCCccHHHHHhHcCCCEe-eeC-----CHHHHHHHHHHHH---------------h--CCCc--EEEEEE
Q 048725 577 TYLGDPSRESEIFPNMLKFAEACGIPGA-QVT-----RKADLRAAIQTML---------------D--TPGP--YLLDVI 631 (661)
Q Consensus 577 ~~~g~p~~~~~~~~d~~~~A~a~G~~~~-~v~-----~~~el~~al~~a~---------------~--~~gp--~lIeV~ 631 (661)
+.+.. ...-|+.+.-++||++.. .|+ +++++.+++.+++ + .++| .+|-++
T Consensus 243 t~l~~-----~~~e~l~~rf~a~Gw~v~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~Ii~r 317 (845)
T 3ahc_A 243 TILAR-----ISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPMLIFR 317 (845)
T ss_dssp CHHHH-----SCHHHHHHHHHHTTEEEEEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEEEEE
T ss_pred ccccc-----cCcHHHHHHHHHCCCEEeEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEE
Confidence 11000 000378899999999998 775 5777776655333 2 2579 999999
Q ss_pred eCCCC
Q 048725 632 FPHQE 636 (661)
Q Consensus 632 ~~~~~ 636 (661)
|....
T Consensus 318 T~kG~ 322 (845)
T 3ahc_A 318 TPKGW 322 (845)
T ss_dssp CCTTT
T ss_pred CcccC
Confidence 98766
No 51
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=95.47 E-value=0.12 Score=53.38 Aligned_cols=115 Identities=19% Similarity=0.108 Sum_probs=77.1
Q ss_pred eEEc-cCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHH--hh---h----CCCcEEEEecCCCCccc-CCCC
Q 048725 128 RNVL-PRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSGLAD--AL---L----DSVPLVAITGQVPRRMI-GTDA 196 (661)
Q Consensus 128 ~~v~-~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~gl~~--A~---~----~~iPll~ItG~~p~~~~-g~~~ 196 (661)
+++. ...|++++.+|.|+|.. |...++-.|.++.+.-+...+.+ |. . .++|++++.. +..... |..
T Consensus 52 r~~~~gIaE~~~v~~a~G~A~~-G~~p~~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~g~~- 128 (324)
T 1umd_B 52 RVMDTPLSEAAIVGAALGMAAH-GLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMP-SGGGVRGGHH- 128 (324)
T ss_dssp TEEECCSCHHHHHHHHHHHHHH-TCEEEEECSSGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEE-ECSSSSCGGG-
T ss_pred cEEECchhHHHHHHHHHHHHHC-CCEEEEEeccHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEc-CCCCCCCCCc-
Confidence 4444 49999999999999987 54344434788888777777754 22 1 7899998763 211111 111
Q ss_pred CCCCCHHHHhhccccccc-ccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccchhh
Q 048725 197 FQETPIVEVTRSITKHNY-LVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQ 251 (661)
Q Consensus 197 ~q~~~~~~~~~~itk~~~-~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~dv~~ 251 (661)
+|..| ..+++.+..+.. .+.++.+...++++|++ .++||+|..|..+..
T Consensus 129 hs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~p~~l~~ 178 (324)
T 1umd_B 129 HSQSP-EAHFVHTAGLKVVAVSTPYDAKGLLKAAIR-----DEDPVVFLEPKRLYR 178 (324)
T ss_dssp SSCCC-HHHHHTSTTCEEEECCSHHHHHHHHHHHHH-----CSSCEEEEEEGGGSS
T ss_pred cchhH-HHHHhcCCCCEEEEeCCHHHHHHHHHHHHh-----cCCCEEEEechHhcC
Confidence 22233 478888776544 46678888888888885 248999998887643
No 52
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=95.18 E-value=0.12 Score=53.95 Aligned_cols=116 Identities=11% Similarity=-0.030 Sum_probs=79.0
Q ss_pred eEEcc-CChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHH-hh----h----CCCcEEEEecCCCCcccCCCCC
Q 048725 128 RNVLP-RHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSGLAD-AL----L----DSVPLVAITGQVPRRMIGTDAF 197 (661)
Q Consensus 128 ~~v~~-~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~gl~~-A~----~----~~iPll~ItG~~p~~~~g~~~~ 197 (661)
+++.+ ..|++++.+|.|+|...-| .++-.|.++++.-+...|.. +. . .+.|++++..... . ..-..+
T Consensus 53 r~~~~gisE~~~~~~a~G~A~~G~r-p~~~~t~~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g-~-~~G~th 129 (338)
T 1qs0_B 53 RVFDAPISESGIVGTAVGMGAYGLR-PVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG-G-IYGGQT 129 (338)
T ss_dssp TEEECCSCHHHHHHHHHHHHHHTCE-EEEECSCGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC-S-SSCCSS
T ss_pred cEEEccccHHHHHHHHHHHHhCCCE-EEEEeccHhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC-C-CCCccc
Confidence 67765 7999999999999988443 33334789998777887763 32 1 3589988762211 1 111334
Q ss_pred CCCCHHHHhhccccccc-ccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccchhh
Q 048725 198 QETPIVEVTRSITKHNY-LVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQ 251 (661)
Q Consensus 198 q~~~~~~~~~~itk~~~-~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~dv~~ 251 (661)
|......+++.+..+.. .+.++.++..+++.|++. .+||+|..|..+..
T Consensus 130 ~s~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~A~~~-----~~Pv~i~~p~~l~r 179 (338)
T 1qs0_B 130 HSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIEC-----DDPVIFLEPKRLYN 179 (338)
T ss_dssp SSCCCHHHHTTSTTCEEECCCSHHHHHHHHHHHHHS-----SSCEEEEEEGGGSS
T ss_pred ccccHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhc-----CCcEEEEEchHhhc
Confidence 44455678887765544 466778888888888863 48999999876643
No 53
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=95.04 E-value=0.078 Score=54.94 Aligned_cols=116 Identities=11% Similarity=0.005 Sum_probs=77.3
Q ss_pred eEEc-cCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHH-hhh--------CCCcEEEEecCCCCcccCCCCC
Q 048725 128 RNVL-PRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSGLAD-ALL--------DSVPLVAITGQVPRRMIGTDAF 197 (661)
Q Consensus 128 ~~v~-~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~gl~~-A~~--------~~iPll~ItG~~p~~~~g~~~~ 197 (661)
+++. ...|++++.+|.|+|.. |...++-.|.++++.-+...+.+ +.. .++||+++.. +.....+...+
T Consensus 51 r~~~~gIaE~~~v~~a~G~A~~-G~rp~~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~g~~h 128 (324)
T 1w85_B 51 RVFDTPLAESGIGGLAIGLALQ-GFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSP-FGGGVHTPELH 128 (324)
T ss_dssp TEEECCSCHHHHHHHHHHHHHT-TCEEEEBCSSGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEE-ECSSSCCCTTS
T ss_pred cEEEcchhHHHHHHHHHHHHhC-CCEEEEEecchhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEe-ccCCCCCCCcc
Confidence 5555 46999999999999987 54344434788888777777764 322 7999998842 21111111112
Q ss_pred CCCCHHHHhhccccccc-ccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccchhh
Q 048725 198 QETPIVEVTRSITKHNY-LVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQ 251 (661)
Q Consensus 198 q~~~~~~~~~~itk~~~-~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~dv~~ 251 (661)
+.. +..+++.+..+.. .+.++.+...+++.|++ .++||+|..|..+..
T Consensus 129 s~~-~~a~~~~iP~l~V~~Psd~~e~~~~l~~a~~-----~~~Pv~i~~p~~l~r 177 (324)
T 1w85_B 129 SDS-LEGLVAQQPGLKVVIPSTPYDAKGLLISAIR-----DNDPVIFLEHLKLYR 177 (324)
T ss_dssp SCC-CHHHHTTSTTCEEECCSSHHHHHHHHHHHHH-----SSSCEEEEEETTTSS
T ss_pred ccc-HHHHHccCCCCEEEeeCCHHHHHHHHHHHHH-----cCCCEEEEechHhcC
Confidence 223 3488888776544 46678888888888886 248999998887643
No 54
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=95.00 E-value=0.15 Score=57.48 Aligned_cols=148 Identities=14% Similarity=0.055 Sum_probs=92.5
Q ss_pred HHHHHHHHHCCCCEEEeccCCCcHHHHHHHHc-CCCCeEEc-cCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHH
Q 048725 92 DILVEALERQGVTDVFAYPGGASMEIHQALTR-SNNIRNVL-PRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSG 169 (661)
Q Consensus 92 d~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~-~~~i~~v~-~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~g 169 (661)
++|.+.+++ .=+.+.+-+.-....+.+.+.+ .++ |++. ...|++++.+|.|.|....++.++ .|+++++.-+...
T Consensus 321 ~~L~~l~~~-d~~vv~~~aD~~~~~~~~~~~~~~p~-R~~d~gIaE~~~v~~a~G~A~~G~~~~~~-~~f~~Fl~~a~dq 397 (616)
T 3mos_A 321 QALAKLGHA-SDRIIALDGDTKNSTFSEIFKKEHPD-RFIECYIAEQNMVSIAVGCATRNRTVPFC-STFAAFFTRAFDQ 397 (616)
T ss_dssp HHHHHHHHH-CTTEEEEESSCHHHHSHHHHHHHCGG-GEEECCSCHHHHHHHHHHHHGGGCCEEEE-EEEGGGGGGGHHH
T ss_pred HHHHHHHhh-CCCEEEEeCCcCCCcchhhHHHhCCC-CeEEcCccHHHHHHHHHHHHHcCCCCEEE-EehHHHHHHHHHH
Confidence 444444444 3344444443322223344433 333 4554 479999999999999876644444 6888999999999
Q ss_pred HHHhhhCCCcEEEEecCCCCcccCCC--CCCCCCHHHHhhccccccc-ccCCcCcHHHHHHHHHHHhhcCCCceEEEEec
Q 048725 170 LADALLDSVPLVAITGQVPRRMIGTD--AFQETPIVEVTRSITKHNY-LVLDVDDIPRIVREAFLLATSGRPGPVLIDVP 246 (661)
Q Consensus 170 l~~A~~~~iPll~ItG~~p~~~~g~~--~~q~~~~~~~~~~itk~~~-~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP 246 (661)
|..+...+.|++++.. +..-..|.+ .+|.+.+..+++.+..... .+.++.++..+++.| ... +||++|..|
T Consensus 398 i~~~a~~~~~v~~v~~-~~g~~~G~dG~tH~~~ed~a~l~~iP~l~V~~P~d~~e~~~~l~~a----~~~-~gp~~ir~~ 471 (616)
T 3mos_A 398 IRMAAISESNINLCGS-HCGVSIGEDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELA----ANT-KGICFIRTS 471 (616)
T ss_dssp HHHHHHTTCCEEEEEE-SBSGGGCTTCGGGCBSSHHHHHHTSTTEEEECCCSHHHHHHHHHHH----HTC-CSEEEEECC
T ss_pred HHHHHHhCCCeEEEEE-CCCccccCCCCcccCHHHHHHhcCCCCCEEEecCCHHHHHHHHHHH----Hhc-CCCEEEEEe
Confidence 9988889999887643 322212322 3566777788888765433 344555555555544 433 499999998
Q ss_pred cc
Q 048725 247 KD 248 (661)
Q Consensus 247 ~d 248 (661)
.+
T Consensus 472 r~ 473 (616)
T 3mos_A 472 RP 473 (616)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 55
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=94.83 E-value=0.065 Score=55.98 Aligned_cols=112 Identities=15% Similarity=0.056 Sum_probs=79.1
Q ss_pred CeEEcc-CChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhh---------CCCcEEEEecCCCCcccC-CC
Q 048725 127 IRNVLP-RHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSGLADALL---------DSVPLVAITGQVPRRMIG-TD 195 (661)
Q Consensus 127 i~~v~~-~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~gl~~A~~---------~~iPll~ItG~~p~~~~g-~~ 195 (661)
-+++.+ ..|++++.+|.|+|.. |...++-.|.+..+.-+...+..... .+.||+++... . ..| .+
T Consensus 62 ~r~~d~gIaE~~~v~~a~G~A~~-G~rp~~~~~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G--~~g~~G 137 (341)
T 2ozl_B 62 KRIIDTPISEMGFAGIAVGAAMA-GLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-G--ASAGVA 137 (341)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHT-TCEEEEECSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-S--CCSSCC
T ss_pred CcEEECchhHHHHHHHHHHHHHC-CCEEEEEeccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-c--CCCCCC
Confidence 366666 6999999999999987 44344434788888888888875443 89998887652 2 222 12
Q ss_pred -CC-CCCCHHHHhhccccccc-ccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccch
Q 048725 196 -AF-QETPIVEVTRSITKHNY-LVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDI 249 (661)
Q Consensus 196 -~~-q~~~~~~~~~~itk~~~-~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~dv 249 (661)
.+ |.++ .+++.+..+.. .+.++.++..+++.|++. ++||+|..|..+
T Consensus 138 ~tHs~~~e--a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~-----~~Pv~i~~~~~~ 187 (341)
T 2ozl_B 138 AQHSQCFA--AWYGHCPGLKVVSPWNSEDAKGLIKSAIRD-----NNPVVVLENELM 187 (341)
T ss_dssp GGGCCCCH--HHHHTSTTCEEECCCSHHHHHHHHHHHHHS-----SSCEEEEECHHH
T ss_pred cchhhHHH--HHhccCCCCEEEEeCCHHHHHHHHHHHHhc-----CCCEEEEEChhh
Confidence 12 4443 67888776654 466788888888888773 489999999765
No 56
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=94.31 E-value=0.22 Score=56.37 Aligned_cols=149 Identities=15% Similarity=0.161 Sum_probs=96.9
Q ss_pred CCcHHHHHHHHHHHCC--CCEEEec----cCC-CcHHHHHHHHcCCCCeEEc-cCChhHHHHHHHHHHHHhCCcEEEEEc
Q 048725 87 PRKGADILVEALERQG--VTDVFAY----PGG-ASMEIHQALTRSNNIRNVL-PRHEQGGIFAAEGYARSSGKPGICIAT 158 (661)
Q Consensus 87 ~~~gad~lv~~L~~~G--V~~vFg~----PG~-~~~~l~~aL~~~~~i~~v~-~~hE~~A~~~A~Gyar~tg~~gv~~~t 158 (661)
.++..+++.+.|.++. -+.|+.+ +++ ....|.+. .++ +++. ...|++++.+|.|.|...-||-+. +
T Consensus 321 ~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~~~~~~~f~~~---~~~-r~~~~gIaE~~~~~~a~G~A~~G~rp~~~--~ 394 (629)
T 2o1x_A 321 AYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSGLVEFSRV---HPH-RYLDVGIAEEVAVTTAAGMALQGMRPVVA--I 394 (629)
T ss_dssp CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHH---CGG-GEEECCSCHHHHHHHHHHHHHTTCEEEEE--E
T ss_pred hHHHHHHHHHHHHHHhhhCcCEEEEeccccCCcChHHHHHh---cCc-ceEeccccHHHHHHHHHHHHHcCCEEEEE--e
Confidence 4567666666554433 2335544 443 34444443 333 5555 569999999999999875444443 4
Q ss_pred cchhhHHHHHHH-HHhhhCCCcEEEEecCCCCcccCC--CCCCCCCHHHHhhccccccc-ccCCcCcHHHHHHHHHHHhh
Q 048725 159 SGPGATNLVSGL-ADALLDSVPLVAITGQVPRRMIGT--DAFQETPIVEVTRSITKHNY-LVLDVDDIPRIVREAFLLAT 234 (661)
Q Consensus 159 sGpG~~N~l~gl-~~A~~~~iPll~ItG~~p~~~~g~--~~~q~~~~~~~~~~itk~~~-~v~~~~~i~~~i~~A~~~a~ 234 (661)
..+.+.-+.-.+ ..+...+.|++++...... .|. ..+|...+..+++.+..+.. .+.++.++..+++.|++.
T Consensus 395 ~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~--~g~dG~tH~~~~d~a~~r~iP~l~v~~P~d~~e~~~~~~~a~~~-- 470 (629)
T 2o1x_A 395 YSTFLQRAYDQVLHDVAIEHLNVTFCIDRAGI--VGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQTH-- 470 (629)
T ss_dssp EHHHHGGGHHHHHHTTTTTTCCCEEEEESBBC--CCTTCTTTCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHHS--
T ss_pred cHHHHHHHHHHHHHHHhhcCCCEEEEEECCcc--CCCCCcccCccHHHHHHHccCCcEEEecCCHHHHHHHHHHHHhC--
Confidence 777776666554 4477889999888733221 232 24566666788888876654 466778888888888875
Q ss_pred cCCCceEEEEeccc
Q 048725 235 SGRPGPVLIDVPKD 248 (661)
Q Consensus 235 s~~~GPV~I~iP~d 248 (661)
.+||+|.+|..
T Consensus 471 ---~~Pv~i~~~r~ 481 (629)
T 2o1x_A 471 ---DGPFAIRYPRG 481 (629)
T ss_dssp ---SSCEEEECCSS
T ss_pred ---CCCEEEEecCC
Confidence 48999999965
No 57
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=94.18 E-value=0.25 Score=55.82 Aligned_cols=151 Identities=15% Similarity=0.168 Sum_probs=95.5
Q ss_pred CCcHHHHHHHHHHHCC--CCEEEec----cCC-CcHHHHHHHHcCCCCeEEc-cCChhHHHHHHHHHHHHhCCcEEEEEc
Q 048725 87 PRKGADILVEALERQG--VTDVFAY----PGG-ASMEIHQALTRSNNIRNVL-PRHEQGGIFAAEGYARSSGKPGICIAT 158 (661)
Q Consensus 87 ~~~gad~lv~~L~~~G--V~~vFg~----PG~-~~~~l~~aL~~~~~i~~v~-~~hE~~A~~~A~Gyar~tg~~gv~~~t 158 (661)
.++..+++.+.|.++. -+.|+.+ +++ ....|.+ +.++ +++. ...|++++.+|.|+|...-||-+. +
T Consensus 318 ~~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~~~~~~~~---~~~~-r~~~~gIaE~~~~~~a~G~A~~G~rp~~~--~ 391 (621)
T 2o1s_A 318 LPSYSKIFGDWLCETAAKDNKLMAITPAMREGSGMVEFSR---KFPD-RYFDVAIAEQHAVTFAAGLAIGGYKPIVA--I 391 (621)
T ss_dssp CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHH---HCTT-TEEECCSCHHHHHHHHHHHHHTTCEEEEE--E
T ss_pred hHHHHHHHHHHHHHHHhhCcCEEEEeCcccCCcChHHHHH---hCCC-ceEecCcCHHHHHHHHHHHHHCCCEEEEE--e
Confidence 4566666666554432 2335544 443 3344444 2343 5555 579999999999999874444333 4
Q ss_pred cchhhHHHHHHH-HHhhhCCCcEEEEecCCCCcccCC--CCCCCCCHHHHhhccccccc-ccCCcCcHHHHHHHHHHHhh
Q 048725 159 SGPGATNLVSGL-ADALLDSVPLVAITGQVPRRMIGT--DAFQETPIVEVTRSITKHNY-LVLDVDDIPRIVREAFLLAT 234 (661)
Q Consensus 159 sGpG~~N~l~gl-~~A~~~~iPll~ItG~~p~~~~g~--~~~q~~~~~~~~~~itk~~~-~v~~~~~i~~~i~~A~~~a~ 234 (661)
.++.+.-+.-.+ ..+...++|++++...... .|. ..+|......+++.+..+.. .+.++.++..+++.|++.+
T Consensus 392 ~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~--~g~~G~tH~~~~d~~~~~~iP~l~v~~P~d~~e~~~~l~~a~~~~- 468 (621)
T 2o1s_A 392 YSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGI--VGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYN- 468 (621)
T ss_dssp ETTGGGGGHHHHHHTTTTTTCCCEEEEESCBC--CCTTCGGGCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHHCC-
T ss_pred hHhHHHHHHHHHHHHHHhcCCCEEEEEECCcc--CCCCCCccCchHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHHcC-
Confidence 778876666554 4467889998888733221 231 23455556678888765544 4667778888888877653
Q ss_pred cCCCceEEEEeccch
Q 048725 235 SGRPGPVLIDVPKDI 249 (661)
Q Consensus 235 s~~~GPV~I~iP~dv 249 (661)
.+||+|..|...
T Consensus 469 ---~~Pv~i~~~r~~ 480 (621)
T 2o1s_A 469 ---DGPSAVRYPRGN 480 (621)
T ss_dssp ---SSCEEEECCSSB
T ss_pred ---CCCEEEEeCCCC
Confidence 489999999653
No 58
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=94.16 E-value=0.15 Score=58.09 Aligned_cols=114 Identities=15% Similarity=0.035 Sum_probs=79.8
Q ss_pred eEEcc-CChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEe-cCCCCcccCC--CCCCCCCHH
Q 048725 128 RNVLP-RHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAIT-GQVPRRMIGT--DAFQETPIV 203 (661)
Q Consensus 128 ~~v~~-~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~It-G~~p~~~~g~--~~~q~~~~~ 203 (661)
|++.+ ..|++++.+|.|+|...|...++ .|+.+.+.-+..+|..+...+.|++++. .+.-. .|. ..+|.+.+.
T Consensus 398 R~i~~gIaE~~~~~~a~GlA~~Gg~~P~~-~t~~~F~~~~~~air~~a~~~lpvv~~~t~~g~g--~G~dG~tHq~~edl 474 (651)
T 2e6k_A 398 RYLHFGVREHAMGAILNGLNLHGGYRAYG-GTFLVFSDYMRPAIRLAALMGVPTVFVFTHDSIA--LGEDGPTHQPVEHL 474 (651)
T ss_dssp CEEECCSCHHHHHHHHHHHHHHSSCEEEE-EEEGGGGGGSHHHHHHHHHHTCCCEEEEECCSGG--GCTTCTTTCCSSHH
T ss_pred ceEecCcCHHHHHHHHHHHHHcCCCEEEE-EeHHHHHHHHHHHHHHHHhcCCCEEEEEECCccc--cCCCcCccccHHHH
Confidence 55554 69999999999999876443333 4677777777788888888999998884 33322 231 245777778
Q ss_pred HHhhccccccc-ccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 204 EVTRSITKHNY-LVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 204 ~~~~~itk~~~-~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
.+++.+..+.. .+.++.++..+++.|++. ..+||+|.+|..
T Consensus 475 a~lr~iP~l~V~~Pad~~E~~~~l~~A~~~----~~~Pv~i~~~r~ 516 (651)
T 2e6k_A 475 MSLRAMPNLFVIRPADAYETFYAWLVALRR----KEGPTALVLTRQ 516 (651)
T ss_dssp HHHHTSTTCEEECCSSHHHHHHHHHHHHHC----CSSCEEEECCSS
T ss_pred HHhcCCCCcEEEecCCHHHHHHHHHHHHHc----CCCCEEEEEeCC
Confidence 88888755443 455666777777766654 248999999864
No 59
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=94.12 E-value=0.11 Score=54.27 Aligned_cols=116 Identities=10% Similarity=-0.057 Sum_probs=78.6
Q ss_pred eEEcc-CChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHH-Hhh---h-----CCC-cEEEEecCCCCcccCCCC
Q 048725 128 RNVLP-RHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSGLA-DAL---L-----DSV-PLVAITGQVPRRMIGTDA 196 (661)
Q Consensus 128 ~~v~~-~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~gl~-~A~---~-----~~i-Pll~ItG~~p~~~~g~~~ 196 (661)
+++.+ ..|++++.+|.|+|...-|| ++-.|.++++.-+...+. .+. + -++ ||+++..... .. +...
T Consensus 68 r~~~~gIaE~~~v~~a~G~A~~G~rp-~~~~tf~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g-~~-~G~t 144 (342)
T 2bfd_B 68 RVFNTPLCEQGIVGFGIGIAVTGATA-IAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGC-VG-HGAL 144 (342)
T ss_dssp TEEECCSCHHHHHHHHHHHHHTTCCE-EEECSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESC-CS-SCGG
T ss_pred eEEEcCcCHHHHHHHHHHHHHCCCee-EEEecchhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCC-CC-CCcc
Confidence 56666 59999999999999885444 333589999887778776 332 1 133 9998854221 11 1233
Q ss_pred CCCCCHHHHhhccccccc-ccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccchhh
Q 048725 197 FQETPIVEVTRSITKHNY-LVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQ 251 (661)
Q Consensus 197 ~q~~~~~~~~~~itk~~~-~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~dv~~ 251 (661)
+|...+..+++.+..+.. .+.++.+...+++.|++. .+||+|..|..+..
T Consensus 145 h~~~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~a~~~-----~~Pv~i~~p~~l~r 195 (342)
T 2bfd_B 145 YHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIED-----KNPCIFFEPKILYR 195 (342)
T ss_dssp GSSCCCHHHHHTSTTCEEECCSSHHHHHHHHHHHHHS-----SSCEEEEEEGGGTT
T ss_pred hhhHhHHHHHhcCCCcEEEeeCCHHHHHHHHHHHHhc-----CCcEEEEecchhcC
Confidence 455555677888765443 466788888888888763 48999999977643
No 60
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=94.10 E-value=0.13 Score=58.65 Aligned_cols=115 Identities=14% Similarity=0.005 Sum_probs=80.4
Q ss_pred eEEc-cCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEecCCCCcccCC--CCCCCCCHHH
Q 048725 128 RNVL-PRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGT--DAFQETPIVE 204 (661)
Q Consensus 128 ~~v~-~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~--~~~q~~~~~~ 204 (661)
|++. ...|++++.+|.|+|...|...++ .|..+.+.-+..+|..+...+.|++++....... .|. ..+|.+.+..
T Consensus 403 R~id~GIaE~~~v~~a~GlA~~gG~~P~~-~tf~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~~-~G~dG~tHq~~edla 480 (669)
T 2r8o_A 403 NYIHYGVREFGMTAIANGISLHGGFLPYT-STFLMFVEYARNAVRMAALMKQRQVMVYTHDSIG-LGEDGPTHQPVEQVA 480 (669)
T ss_dssp SEEECCSCHHHHHHHHHHHHHHSSCEEEE-EEEGGGGGTTHHHHHHHHHTTCCCEEEEECCSGG-GCTTCTTTCCSSHHH
T ss_pred CeeecchhHHHHHHHHHHHHHcCCCeEEE-eehHHHHHHHHHHHHHHHhcCCCEEEEEeCCCcC-cCCCCCccCCHHHHH
Confidence 4554 469999999999999885654554 5778887778888888889999998885322111 232 2357777888
Q ss_pred Hhhccccccc-ccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 205 VTRSITKHNY-LVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 205 ~~~~itk~~~-~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
+++.+....+ .+.++.++..+++.|++. ..+||+|.+|..
T Consensus 481 ~lr~iP~l~V~~Pad~~E~~~~l~~a~~~----~~~Pv~i~~~r~ 521 (669)
T 2r8o_A 481 SLRVTPNMSTWRPCDQVESAVAWKYGVER----QDGPTALILSRQ 521 (669)
T ss_dssp HHHTSTTCEEECCSSHHHHHHHHHHHHHC----SSSCEEEECCSS
T ss_pred HhcCCCCCEEEecCCHHHHHHHHHHHHHh----CCCcEEEEeCCC
Confidence 8888755433 355666666666666553 359999999864
No 61
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=93.92 E-value=0.14 Score=51.83 Aligned_cols=70 Identities=19% Similarity=0.265 Sum_probs=51.4
Q ss_pred HHhhhcCCEEEEeCCCCCCCcCCcccc-cCCCCeEEEEcCCchh-hc-cCCCCcceEeccHHHHHHHHHHHhc
Q 048725 349 NYAVDKSDLLLAFGVRFDDRVTGKLEA-FASRAKIVHIDIDSAE-IG-KNKQPHVSVCADLKLALKGINRILG 418 (661)
Q Consensus 349 ~~~l~~aDlvL~vG~~~~~~~t~~~~~-~~~~~~vi~Id~d~~~-i~-~~~~~~~~i~~D~~~~L~~L~~~l~ 418 (661)
.+.+.+||++|++|+++.-+....+-. ...+..+|.|+.++.. +. .....|+.+.+|+...+..|.+.|.
T Consensus 192 ~~~~~~aDlllviGTSl~V~Paa~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~~~g~~~~~~~~L~~~lg 264 (285)
T 3glr_A 192 VVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWHPRSRDVAQLGDVVHGVESLVELLG 264 (285)
T ss_dssp HHHHHHCSEEEEESCCCCEETTGGGGGSSCTTSCEEEEESSCCTHHHHSCCTTEEEEESCHHHHHHHHHHHHT
T ss_pred HHHHhcCCEEEEeCCCCccccHHHHHHHHhCCCcEEEECCCCcCccccCCCCccEEEcCCHHHHHHHHHHHhC
Confidence 456789999999999986554444332 3345678889988753 21 2356788999999999999998774
No 62
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=93.84 E-value=0.14 Score=54.01 Aligned_cols=115 Identities=16% Similarity=0.005 Sum_probs=71.5
Q ss_pred eEEcc-CChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHH-hhhC--------CCcEEEEecCCCCcccCCCC-
Q 048725 128 RNVLP-RHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSGLAD-ALLD--------SVPLVAITGQVPRRMIGTDA- 196 (661)
Q Consensus 128 ~~v~~-~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~gl~~-A~~~--------~iPll~ItG~~p~~~~g~~~- 196 (661)
+++.+ ..|++++.+|.|+|...-| .++-.|.++.+.-++..|.. +... +.||+++..... ..+.+.
T Consensus 99 r~~d~gIaE~~~v~~a~G~A~~G~r-pv~~~tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg--~~g~g~~ 175 (369)
T 1ik6_A 99 RVIDTPLNEGGILGFAMGMAMAGLK-PVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGS--GTRGGLY 175 (369)
T ss_dssp TEEECCSCHHHHHHHHHHHHHTTCE-EEEECCCC----CCHHHHHHHHHHHHC------CCCCEEEEEECC---------
T ss_pred cEEECcccHHHHHHHHHHHHHCCCe-eEEEecchhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCC--CCCCCcc
Confidence 55554 6999999999999987443 33334788888777777755 3333 899887663222 122222
Q ss_pred CCCCCHHHHhhccccccc-ccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccchhh
Q 048725 197 FQETPIVEVTRSITKHNY-LVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQ 251 (661)
Q Consensus 197 ~q~~~~~~~~~~itk~~~-~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~dv~~ 251 (661)
+|..+ ..+++.+..+.+ .+.++.++..+++.|++ ..+||+|..|..+..
T Consensus 176 hs~~~-~a~l~~iPnl~V~~Psd~~e~~~ll~~A~~-----~~~Pv~i~~p~~l~r 225 (369)
T 1ik6_A 176 HSNSP-EAIFVHTPGLVVVMPSTPYNAKGLLKAAIR-----GDDPVVFLEPKILYR 225 (369)
T ss_dssp ----H-HHHHHTCTTCEEECCCSHHHHHHHHHHHHH-----SSSCEEEEEEGGGSS
T ss_pred ccccH-HHHHcCCCCcEEEecCCHHHHHHHHHHHHh-----CCCCEEEEEehhhhc
Confidence 23333 577888766554 46678888888888876 248999999987643
No 63
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=93.80 E-value=0.064 Score=52.92 Aligned_cols=70 Identities=13% Similarity=0.129 Sum_probs=51.1
Q ss_pred HHHHHhhhcCCEEEEeCCCCCCCcCCcccccC--CCCeEEEEcCCchhhccCCCCcceEeccHHHHHHHHHHHh
Q 048725 346 VYANYAVDKSDLLLAFGVRFDDRVTGKLEAFA--SRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRIL 417 (661)
Q Consensus 346 ~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~--~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 417 (661)
..+.+.+++||++|++|+.+.-+....+.... .++++|.|+.++..... ..++.|.+|+.++|..|.+.+
T Consensus 159 ~~a~~~~~~adl~lviGTSl~V~Pa~~l~~~a~~~g~~~i~iN~~~t~~~~--~~~~~i~~~~~~~l~~l~~~l 230 (235)
T 1s5p_A 159 DEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGN--EFAEKYYGPASQVVPEFVEKL 230 (235)
T ss_dssp HHHHHHHHHCSEEEEESCCTTEETGGGHHHHHHHTTCEEEEEESSSCC-----CCSEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEEECcCCchhhHHHHHHHHHHcCCeEEEEECCCCCCCc--cccEEEeCCHHHHHHHHHHHH
Confidence 34566788999999999998654443332222 36789999999876543 567889999999999997755
No 64
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=93.72 E-value=0.25 Score=56.17 Aligned_cols=113 Identities=15% Similarity=0.042 Sum_probs=78.2
Q ss_pred eEEcc-CChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEe-cCCCCcccCC--CCCCCCCHH
Q 048725 128 RNVLP-RHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAIT-GQVPRRMIGT--DAFQETPIV 203 (661)
Q Consensus 128 ~~v~~-~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~It-G~~p~~~~g~--~~~q~~~~~ 203 (661)
|++.+ .-|++++.+|.|.|...|...++- |..+-+.-+...+..+...+.||+++. .+.-. .|. ..+|.+.+.
T Consensus 404 R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~-tf~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~g--~G~dG~THq~~ed~ 480 (663)
T 3kom_A 404 NYLSYGVREFGMAAIMNGLSLYGGIKPYGG-TFLVFSDYSRNAIRMSALMKQPVVHVMSHDSIG--LGEDGPTHQPIEHV 480 (663)
T ss_dssp CEEECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGGGHHHHHHHHHHHHHTTCCCEEEEECCSGG--GCTTCTTTCCSSHH
T ss_pred CeEecCccHHHHHHHHHHHHHcCCCEEEEE-ehHHHHHHHHHHHHHHHhcCCCEEEEEeCCccc--cCCCCCCcCCHHHH
Confidence 55554 899999999999998756545543 578888777888888888999999884 33221 232 346777788
Q ss_pred HHhhccccccc-ccCCcCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 048725 204 EVTRSITKHNY-LVLDVDDIPRIVREAFLLATSGRPGPVLIDVPK 247 (661)
Q Consensus 204 ~~~~~itk~~~-~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~ 247 (661)
.+++.+....+ .+.++.++..+++.|+ ....+||+|.+|.
T Consensus 481 a~lr~iPnl~V~~Pad~~e~~~~l~~A~----~~~~~Pv~ir~~r 521 (663)
T 3kom_A 481 PSLRLIPNLSVWRPADTIETMIAWKEAV----KSKDTPSVMVLTR 521 (663)
T ss_dssp HHHHTSTTCEEECCCSHHHHHHHHHHHH----HCSSCCEEEECCS
T ss_pred HHHhcCCCcEEEeeCCHHHHHHHHHHHH----HhCCCCEEEEccC
Confidence 89998865433 3445555555555554 4335999999885
No 65
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=93.43 E-value=0.44 Score=43.38 Aligned_cols=129 Identities=16% Similarity=0.195 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCcc--chHHHH---HHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCC---------
Q 048725 279 HLEQIVRLISESKKPVLYVGGGCL--NSSEEL---RKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHG--------- 344 (661)
Q Consensus 279 ~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l---~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g--------- 344 (661)
..++++++|..|++.+|+-|.|.. .+...+ .++.+.-|+-|--- -||..-.+.|...
T Consensus 12 ~~~~~a~~l~~A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~fa---------IHPVAGRMPGhmNVLLAEA~VP 82 (180)
T 1pno_A 12 SAEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYA---------IHPVAGRMPGHMNVLLAEANVP 82 (180)
T ss_dssp CHHHHHHHHHTCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEE---------ECTTCTTSTTHHHHHHHHTTCC
T ss_pred CHHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEE---------eccccccCCCcceEEEEeeCCC
Confidence 356888999999999999999864 455444 44555566665211 2554433333221
Q ss_pred ------cHHHHHhhhcCCEEEEeCCCCC-------CCc---CC--cccccCCCCeEEEEcCCc--hhhcc-----CCCCc
Q 048725 345 ------TVYANYAVDKSDLLLAFGVRFD-------DRV---TG--KLEAFASRAKIVHIDIDS--AEIGK-----NKQPH 399 (661)
Q Consensus 345 ------~~~a~~~l~~aDlvL~vG~~~~-------~~~---t~--~~~~~~~~~~vi~Id~d~--~~i~~-----~~~~~ 399 (661)
-...|.-+.+.|++|++|..-. +.. .| -++-|. ..++|.+-..- ..-|- ..+..
T Consensus 83 Yd~v~EMdeIN~df~~tDv~lVIGANDvvNpaA~~dp~SpI~GMPvl~v~k-Ak~ViV~KRsm~~GyAgv~NpLF~~~nt 161 (180)
T 1pno_A 83 YDEVFELEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVEK-AGTVLFIKRSMASGYAGVENELFFRNNT 161 (180)
T ss_dssp GGGEEEHHHHGGGGGGCSEEEEESCCGGGCGGGTTCTTSTTTTCCCCCGGG-SSEEEEEESSSCCCTTCCCCGGGTSTTE
T ss_pred HHHHhhHHHHhhhhhhcCEEEEeccccccCchhccCCCCCcCCCeeechhh-CCEEEEEECCCCCCcCCCcCcceecCCc
Confidence 1234566789999999996521 111 11 112222 23455553321 11110 12335
Q ss_pred ceEeccHHHHHHHHHHHh
Q 048725 400 VSVCADLKLALKGINRIL 417 (661)
Q Consensus 400 ~~i~~D~~~~L~~L~~~l 417 (661)
..+.||++..+++|...+
T Consensus 162 ~MlfGDAK~~~~~l~~~l 179 (180)
T 1pno_A 162 MMLFGDAKKMTEQIVQAM 179 (180)
T ss_dssp EEEESCHHHHHHHHHHHH
T ss_pred eEEeccHHHHHHHHHHHh
Confidence 668999999999998765
No 66
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=93.31 E-value=0.13 Score=53.23 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=50.0
Q ss_pred HHHhhhcCCEEEEeCCCCCCCcCCccc-ccCCCCeEEEEcCCchhhccC------------------CCCcceEeccHHH
Q 048725 348 ANYAVDKSDLLLAFGVRFDDRVTGKLE-AFASRAKIVHIDIDSAEIGKN------------------KQPHVSVCADLKL 408 (661)
Q Consensus 348 a~~~l~~aDlvL~vG~~~~~~~t~~~~-~~~~~~~vi~Id~d~~~i~~~------------------~~~~~~i~~D~~~ 408 (661)
+.+.+++||++|++|+.+.-+....+- .......+|.|+.++...... ...++.+.+|+.+
T Consensus 214 a~~~~~~aDlllviGTSl~V~P~a~l~~~~~~~~~~v~IN~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~gd~~~ 293 (323)
T 1j8f_A 214 MQSDFLKVDLLLVMGTSLQVQPFASLISKAPLSTPRLLINKEKAGQSDPFLGMIMGLGGGMDFDSKKAYRDVAWLGECDQ 293 (323)
T ss_dssp HHHGGGSCSEEEEESSCSCSHHHHHHHTTSCTTCCEEEEESSCCCCCCHHHHHHHHHHTCCCSSSTTCCSEEEEESCHHH
T ss_pred HHHHHhCCCEEEEEeeCcccHHHHHHHHHHHcCCcEEEEeCCCCCCCcccccccccccccccccccccceeEEEeCCHHH
Confidence 456788999999999998654433332 223345567788877654321 3367889999999
Q ss_pred HHHHHHHHhc
Q 048725 409 ALKGINRILG 418 (661)
Q Consensus 409 ~L~~L~~~l~ 418 (661)
++..|.+.|.
T Consensus 294 ~l~~L~~~lg 303 (323)
T 1j8f_A 294 GCLALAELLG 303 (323)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 9999988764
No 67
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=93.06 E-value=0.4 Score=44.62 Aligned_cols=129 Identities=15% Similarity=0.211 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCcc--chHHH---HHHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCC---------
Q 048725 279 HLEQIVRLISESKKPVLYVGGGCL--NSSEE---LRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHG--------- 344 (661)
Q Consensus 279 ~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~---l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g--------- 344 (661)
..++++++|..|++.+|+-|+|.. .+... |.++.+.-|+-|--- -||..-.+.|...
T Consensus 35 ~~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~fa---------IHPVAGRMPGhMNVLLAEA~VP 105 (203)
T 2fsv_C 35 SAEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYA---------IHPVAGRMPGHMNVLLAEANVP 105 (203)
T ss_dssp CHHHHHHHHHHCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEE---------ECTTCSSSTTHHHHHHHHTTCC
T ss_pred CHHHHHHHHHhCCcEEEEcCchHhHHHHHHHHHHHHHHHHHcCCeEEEE---------ecccccCCCCCccEEEEEecCC
Confidence 356788999999999999999864 45544 445555566665211 2665444444321
Q ss_pred ------cHHHHHhhhcCCEEEEeCCCCC-------CCc---CC--cccccCCCCeEEEEcCCc--hhhcc-----CCCCc
Q 048725 345 ------TVYANYAVDKSDLLLAFGVRFD-------DRV---TG--KLEAFASRAKIVHIDIDS--AEIGK-----NKQPH 399 (661)
Q Consensus 345 ------~~~a~~~l~~aDlvL~vG~~~~-------~~~---t~--~~~~~~~~~~vi~Id~d~--~~i~~-----~~~~~ 399 (661)
-...|.-+.+.|++|++|..-. +.. .+ -++-|. .+++|.+-..- ..-|- ..+..
T Consensus 106 Yd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~k-Ak~ViV~KRsm~~GyAgv~NpLF~~~nt 184 (203)
T 2fsv_C 106 YDEVFELEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVWK-AGTVLFIKRSMASGYAGVENELFFRNNT 184 (203)
T ss_dssp GGGEEEHHHHGGGSTTCSEEEEESCCGGGCGGGTSCTTSTTTTCCCCCGGG-SSEEEEEESSSCCCTTCCCCGGGGSTTE
T ss_pred HHHHhhHHHHhhhhhhcCEEEEeccccccCchhhcCCCCCcCCCeeecccc-CCEEEEEECCCCCCcCCCcCcceecCCc
Confidence 1134556789999999996521 111 11 112222 23455553321 11110 12334
Q ss_pred ceEeccHHHHHHHHHHHh
Q 048725 400 VSVCADLKLALKGINRIL 417 (661)
Q Consensus 400 ~~i~~D~~~~L~~L~~~l 417 (661)
..+.||++..+++|...+
T Consensus 185 ~MlfGDAK~~~~~l~~~l 202 (203)
T 2fsv_C 185 MMLFGDAKKMTEQIVQAM 202 (203)
T ss_dssp EEEESCHHHHHHHHHHHC
T ss_pred eEEeccHHHHHHHHHHHh
Confidence 668999999999998764
No 68
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=93.05 E-value=0.13 Score=52.27 Aligned_cols=68 Identities=12% Similarity=0.142 Sum_probs=48.9
Q ss_pred hhhcCCEEEEeCCCCCCCcCCcccc-cCCCCeEEEEcCCchh-hc-cCCCCcceEeccHHHHHHHHHHHhc
Q 048725 351 AVDKSDLLLAFGVRFDDRVTGKLEA-FASRAKIVHIDIDSAE-IG-KNKQPHVSVCADLKLALKGINRILG 418 (661)
Q Consensus 351 ~l~~aDlvL~vG~~~~~~~t~~~~~-~~~~~~vi~Id~d~~~-i~-~~~~~~~~i~~D~~~~L~~L~~~l~ 418 (661)
.+.+||++|++|+.+.-+....+.. ...++++|.|+.++.. +. .....++.+.+|+.++|..|.+.+.
T Consensus 208 ~~~~~DlllviGTSl~V~Pa~~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~i~~~~~~~l~~l~~~l~ 278 (289)
T 1q1a_A 208 KHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELG 278 (289)
T ss_dssp --CCCCEEEEESCCCCEETTTHHHHHSCTTSEEEEESSSCCTHHHHSCCTTCEEECCCHHHHHHHHHHHHT
T ss_pred HhccCCEEEEEccCCChhhHHHHHHHHhcCCCEEEEECCCcccCCCCCcceeEEEeCCHHHHHHHHHHHcC
Confidence 3679999999999987554444332 3346789999988864 21 2234788999999999999988763
No 69
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=92.80 E-value=0.42 Score=44.65 Aligned_cols=130 Identities=16% Similarity=0.191 Sum_probs=75.6
Q ss_pred HHHHHHHHHhCCCcEEEEcCCcc--chHHHH---HHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCC----------
Q 048725 280 LEQIVRLISESKKPVLYVGGGCL--NSSEEL---RKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHG---------- 344 (661)
Q Consensus 280 l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l---~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g---------- 344 (661)
.++++++|..|++.+|+-|+|.. .+...+ .++.+.-|+-|--- -||..-.+.|...
T Consensus 35 ~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~fa---------IHPVAGRMPGhMNVLLAEA~VPY 105 (207)
T 1djl_A 35 LDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKMLTEQGKKVRFG---------IHPVAGRMPGQLNVLLAEAGVPY 105 (207)
T ss_dssp HHHHHHHHHHCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEE---------ECTTCSSSTTHHHHHHHHTTCCG
T ss_pred HHHHHHHHHhCCeEEEECCchHHHHHHhHHHHHHHHHHHHCCCeEEEE---------eCccCCCCCCCCcEEEEEeCCCH
Confidence 46888999999999999999864 455444 45555566665211 2565444444321
Q ss_pred -----cHHHHHhhhcCCEEEEeCCCCCC-------C---cCC--cccccCCCCeEEEEcCCc--hhhcc-----CCCCcc
Q 048725 345 -----TVYANYAVDKSDLLLAFGVRFDD-------R---VTG--KLEAFASRAKIVHIDIDS--AEIGK-----NKQPHV 400 (661)
Q Consensus 345 -----~~~a~~~l~~aDlvL~vG~~~~~-------~---~t~--~~~~~~~~~~vi~Id~d~--~~i~~-----~~~~~~ 400 (661)
-...|.-+.+.|++|++|..-.- . ..| -++-|. .+++|.+-..- ..-|- ..+...
T Consensus 106 d~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~k-Ak~ViV~KRsm~~GyAgv~NpLF~~~nt~ 184 (207)
T 1djl_A 106 DIVLEMDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWK-SKQVIVMKRSLGVGYAAVDNPIFYKPNTA 184 (207)
T ss_dssp GGEEEHHHHGGGGGGCSEEEEESCCGGGCTHHHHCTTSTTTTCCCCCGGG-SSEEEEEESSSCCCTTCCCCGGGGSTTEE
T ss_pred HHHhhHHHHhhhhhhcCEEEEeccccccCCccccCCCCCccCCeeeccee-cCEEEEEECCCCCCcCCCcCcceecCCce
Confidence 12345667899999999965210 0 011 112222 23455553321 11110 123346
Q ss_pred eEeccHHHHHHHHHHHhcC
Q 048725 401 SVCADLKLALKGINRILGG 419 (661)
Q Consensus 401 ~i~~D~~~~L~~L~~~l~~ 419 (661)
.+.||++..++.|...+..
T Consensus 185 MlfGDAK~~~~~l~~~l~~ 203 (207)
T 1djl_A 185 MLLGDAKKTCDALQAKVRE 203 (207)
T ss_dssp EEESCHHHHHHHHHHHHHT
T ss_pred EEeccHHHHHHHHHHHHHH
Confidence 6899999999999887753
No 70
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=92.76 E-value=0.31 Score=55.64 Aligned_cols=114 Identities=11% Similarity=0.041 Sum_probs=78.2
Q ss_pred eEEc-cCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEe-cCCCCcccCC--CCCCCCCHH
Q 048725 128 RNVL-PRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAIT-GQVPRRMIGT--DAFQETPIV 203 (661)
Q Consensus 128 ~~v~-~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~It-G~~p~~~~g~--~~~q~~~~~ 203 (661)
|++. ...|++++.+|.|+|...|...++. +..+-+.-+..+|..+...+.|++++. .+... .|. ..+|.+.+.
T Consensus 403 R~id~GIaE~~~~~~a~GlA~~GG~~P~~~-~~~~F~~~~~~~ir~~a~~~~pvv~~~t~~g~g--~G~dG~tHq~~edl 479 (673)
T 1r9j_A 403 RYIRFGVREHAMCAILNGLDAHDGIIPFGG-TFLNFIGYALGAVRLAAISHHRVIYVATHDSIG--VGEDGPTHQPVELV 479 (673)
T ss_dssp CEEECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGG--GCTTCTTTCCSSHH
T ss_pred CeEecCccHHHHHHHHHHHHhcCCCEEEEE-ehHHHHHHHHHHHHHHHhcCCCEEEEEECCccC--cCCCCcccCCHHHH
Confidence 4444 5899999999999998755444443 466776777888888888999988875 22221 232 235777888
Q ss_pred HHhhcccccc-cccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 204 EVTRSITKHN-YLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 204 ~~~~~itk~~-~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
.+++.+.... +.+.++.++..+++.|++. ..+||+|.+|..
T Consensus 480 a~lr~iP~l~V~~Pad~~e~~~~l~~a~~~----~~~Pv~i~~~r~ 521 (673)
T 1r9j_A 480 AALRAMPNLQVIRPSDQTETSGAWAVALSS----IHTPTVLCLSRQ 521 (673)
T ss_dssp HHHHHSTTCEEECCSSHHHHHHHHHHHHHC----TTCCEEEECCSS
T ss_pred HHHcCCCCCEEEeCCCHHHHHHHHHHHHHh----CCCeEEEEEcCC
Confidence 8888765532 2455666666666666653 358999999864
No 71
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=92.73 E-value=0.37 Score=54.38 Aligned_cols=111 Identities=13% Similarity=-0.048 Sum_probs=78.7
Q ss_pred EccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEe-cCCCCcccCC--CCCCCCCHHHHh
Q 048725 130 VLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAIT-GQVPRRMIGT--DAFQETPIVEVT 206 (661)
Q Consensus 130 v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~It-G~~p~~~~g~--~~~q~~~~~~~~ 206 (661)
-...-|++++.+|.|.|...|..-+|- |..+-+.-+...|..+...+.||+++. .+.-. .|. ..+|.+.+..++
T Consensus 386 d~GIaE~~~v~~a~GlA~~gG~~P~~~-~f~~F~~~~~~~ir~~a~~~~pv~~~~t~~g~g--~G~dG~THq~~ed~a~l 462 (632)
T 3l84_A 386 HFGIREHAMAAINNAFARYGIFLPFSA-TFFIFSEYLKPAARIAALMKIKHFFIFTHDSIG--VGEDGPTHQPIEQLSTF 462 (632)
T ss_dssp ECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGG--GCTTCGGGSCSSHHHHH
T ss_pred EeCccHHHHHHHHHHHHHcCCCEEEEE-ecHHHHHHHHHHHHHHhccCCCEEEEEECCCcC--CCCCCCCCCCHhHHHHH
Confidence 345799999999999998855444443 466777777888877778899999884 33221 232 235777788999
Q ss_pred hccccccc-ccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 207 RSITKHNY-LVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 207 ~~itk~~~-~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
+.+....+ .+.++.++..+++.|++ .+|||+|.+|+.
T Consensus 463 r~iP~l~V~~P~d~~e~~~~l~~A~~-----~~~Pv~ir~~r~ 500 (632)
T 3l84_A 463 RAMPNFLTFRPADGVENVKAWQIALN-----ADIPSAFVLSRQ 500 (632)
T ss_dssp HHSSSCEEECCSSHHHHHHHHHHHHH-----CSSCEEEECCSS
T ss_pred hcCCCCEEEecCCHHHHHHHHHHHHh-----CCCCEEEEEcCC
Confidence 98876543 35566777777777665 259999999864
No 72
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=92.68 E-value=0.29 Score=55.96 Aligned_cols=111 Identities=11% Similarity=0.077 Sum_probs=76.3
Q ss_pred ccCChhHHHHHHHHHHHHhCCc-EEEEEccchhhHHHHHHHHHhhhCCCcEEEEe-cCCCCcccCC--CCCCCCCHHHHh
Q 048725 131 LPRHEQGGIFAAEGYARSSGKP-GICIATSGPGATNLVSGLADALLDSVPLVAIT-GQVPRRMIGT--DAFQETPIVEVT 206 (661)
Q Consensus 131 ~~~hE~~A~~~A~Gyar~tg~~-gv~~~tsGpG~~N~l~gl~~A~~~~iPll~It-G~~p~~~~g~--~~~q~~~~~~~~ 206 (661)
...-|++++.+|.|+|...|.. .++ .|..+-+.-+..+|..+...+.||+++. .+... .|. ..+|.+.+..++
T Consensus 414 ~gIaE~~~vg~a~GlA~~Gg~~~P~~-~~f~~F~~~~~~air~~a~~~lpvv~v~t~~g~g--~G~dG~tHq~~edla~l 490 (680)
T 1gpu_A 414 YGIREHAMGAIMNGISAFGANYKPYG-GTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIG--VGEDGPTHQPIETLAHF 490 (680)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCEEEE-EEEHHHHGGGHHHHHHHHHHTCCCEEEEECCSGG--GCTTCTTTCCSSHHHHH
T ss_pred CCccHHHHHHHHHHHHhcCCCceEEE-eehHHHHHHHHHHHHHHHhcCCCEEEEEeCCccc--cCCCCCccCCHHHHHHh
Confidence 3578999999999999876433 333 4677776677788888888899998875 23221 231 235777888889
Q ss_pred hccccccc-ccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 207 RSITKHNY-LVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 207 ~~itk~~~-~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
+.+....+ .+.++.++..+++.|++. ..+||+|.+|..
T Consensus 491 r~iP~l~V~~Pad~~e~~~~l~~A~~~----~~~Pv~i~~~r~ 529 (680)
T 1gpu_A 491 RSLPNIQVWRPADGNEVSAAYKNSLES----KHTPSIIALSRQ 529 (680)
T ss_dssp HTSSSCEEECCCSHHHHHHHHHHHHHC----SSCCEEEECCSS
T ss_pred cCCCCCEEEecCCHHHHHHHHHHHHHh----CCCcEEEEecCC
Confidence 98755432 345666666666665553 359999999863
No 73
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=92.66 E-value=1.4 Score=49.12 Aligned_cols=117 Identities=11% Similarity=0.012 Sum_probs=83.1
Q ss_pred CCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhh
Q 048725 492 PRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFY 570 (661)
Q Consensus 492 p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~ 570 (661)
..+++....-. .+.-+|.|.+.+. +++.+|++-=| +..-.++.|.+|...++|+++|.-+-....+-
T Consensus 48 ~i~~v~~~~E~---~Aa~~A~Gyar~t-g~p~v~~~TsGpG~~N~~~~l~~A~~~~vPll~itg~~~~~~~~-------- 115 (566)
T 1ozh_A 48 SIRIIPVRHEA---NAAFMAAAVGRIT-GKAGVALVTSGPGCSNLITGMATANSEGDPVVALGGAVKRADKA-------- 115 (566)
T ss_dssp SSEEEECSSHH---HHHHHHHHHHHHH-SSCEEEEECSTHHHHTTHHHHHHHHHHTCCEEEEEEECCTTTC---------
T ss_pred CCcEEEeCCHH---HHHHHHHHHHHHH-CCCEEEEEccChHHHHHHHHHHHHHhcCCCEEEEeCCCccccCC--------
Confidence 35666554432 2556788877765 56777777555 44555899999999999999998876542210
Q ss_pred cccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeC
Q 048725 571 KANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFP 633 (661)
Q Consensus 571 ~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~ 633 (661)
. +..+ ..|...+.+.+-.+..++.+++++...+++|+. .+||+.|++..|
T Consensus 116 -~-------~~~Q-----~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~r~GPV~l~iP~d 170 (566)
T 1ozh_A 116 -K-------QVHQ-----SMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQD 170 (566)
T ss_dssp ------------------CCCHHHHHGGGCSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred -C-------Cccc-----ccCHHHHHHHHhheEEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 0 0011 168999999998889999999998877777664 359999999987
No 74
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=92.53 E-value=0.85 Score=41.65 Aligned_cols=129 Identities=18% Similarity=0.218 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCcc--chHH---HHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCC--------
Q 048725 278 VHLEQIVRLISESKKPVLYVGGGCL--NSSE---ELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHG-------- 344 (661)
Q Consensus 278 ~~l~~~~~~L~~AkrPvIv~G~g~~--~a~~---~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g-------- 344 (661)
...++++++|..|++.+|+-|.|.. .+.. ++.++.+.-|+-|--- -||..-.+.|...
T Consensus 18 ~~~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~fa---------IHPVAGRMPGhMNVLLAEA~V 88 (186)
T 2bru_C 18 ITAEETAELLKNSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFG---------IHPVAGRLPGHMNVLLAEAKV 88 (186)
T ss_dssp --CHHHHHHHHHCSEEEEECSBHHHHTTTHHHHHHHHHHHHHHCCEEEEE---------ECSSSSSSSSTHHHHHHHHTC
T ss_pred cCHHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEE---------eccccccCCCcceEEEEecCC
Confidence 3456889999999999999999863 4544 4555555667766211 2554333333321
Q ss_pred -------cHHHHHhhhcCCEEEEeCCCCC-------CCc---CC--cccccCCCCeEEEEcCCch--hhcc-----CCCC
Q 048725 345 -------TVYANYAVDKSDLLLAFGVRFD-------DRV---TG--KLEAFASRAKIVHIDIDSA--EIGK-----NKQP 398 (661)
Q Consensus 345 -------~~~a~~~l~~aDlvL~vG~~~~-------~~~---t~--~~~~~~~~~~vi~Id~d~~--~i~~-----~~~~ 398 (661)
-...|.-+.+.|++|++|..-. +.. .| -++-| +.+++|.+-..-. .-|- ..+.
T Consensus 89 PYd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~-kAk~ViV~KRsm~~GyAgv~NpLF~~~n 167 (186)
T 2bru_C 89 PYDIVLEMDEINDDFADTDTVLVIGANDTVNPAAQDDPKSPIAGMPVLEVW-KAQNVIVFKRSMNTGYAGVQNPLFFKEN 167 (186)
T ss_dssp CTTTEEESCCCHHHHHHCSEEEECBCGGGGCGGGTTSTTSSSTTCCCCCCT-TSSEEEEECSSSCCSSCCCSCTTTBSSS
T ss_pred CHHHHhhHHHHhcccccCCEEEEeccccccCccccCCCCCCcCCCeeeccc-cCCEEEEEECCCCCCcCCCcCcceecCC
Confidence 0123556789999999995421 111 11 11222 2234555533211 1110 1233
Q ss_pred cceEeccHHHHHHHHHHH
Q 048725 399 HVSVCADLKLALKGINRI 416 (661)
Q Consensus 399 ~~~i~~D~~~~L~~L~~~ 416 (661)
...+.||++..+++|...
T Consensus 168 t~MlfGDAK~~~~~l~~~ 185 (186)
T 2bru_C 168 THMLFGDAKASVDAILKA 185 (186)
T ss_dssp EEEECSCHHHHHHHHHHH
T ss_pred ceEEeccHHHHHHHHHHh
Confidence 456889999999998764
No 75
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=92.44 E-value=0.3 Score=55.77 Aligned_cols=114 Identities=18% Similarity=0.151 Sum_probs=78.3
Q ss_pred eEEc-cCChhHHHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEe-cCCCCcccCC--CCCCCCCH
Q 048725 128 RNVL-PRHEQGGIFAAEGYARSS-GKPGICIATSGPGATNLVSGLADALLDSVPLVAIT-GQVPRRMIGT--DAFQETPI 202 (661)
Q Consensus 128 ~~v~-~~hE~~A~~~A~Gyar~t-g~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~It-G~~p~~~~g~--~~~q~~~~ 202 (661)
|++. ...|++++.+|.|+|... |...++ .|..+.+.-+..+|..+...+.|++++. .+.-. .|. ..+|.+.+
T Consensus 415 R~id~gIaE~~~v~~a~GlA~~G~~~~P~~-~t~~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~g--~G~dG~tHq~~ed 491 (675)
T 1itz_A 415 RNVRFGVREHGMGAICNGIALHSPGFVPYC-ATFFVFTDYMRGAMRISALSEAGVIYVMTHDSIG--LGEDGPTHQPIEH 491 (675)
T ss_dssp CBCCCCSCHHHHHHHHHHHHTTCTTCEEEE-EEEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGG--GCTTCTTTCCSSH
T ss_pred CeEeecccHHHHHHHHHHHHhcCCCCEEEE-EEHHHHHHHHHHHHHHHHhcCCCEEEEEECCccc--cCCCCCCcCcHHH
Confidence 4444 469999999999999766 243343 3577888778888988889999988886 22221 231 24577888
Q ss_pred HHHhhccccccc-ccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 203 VEVTRSITKHNY-LVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 203 ~~~~~~itk~~~-~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
..+++.+....+ .+.++.++..+++.|++. ..+||+|.+|..
T Consensus 492 la~lr~iP~l~V~~Pad~~e~~~~l~~a~~~----~~~Pv~i~~~r~ 534 (675)
T 1itz_A 492 LVSFRAMPNILMLRPADGNETAGAYKVAVLN----RKRPSILALSRQ 534 (675)
T ss_dssp HHHHHSSSSCEEECCCSHHHHHHHHHHHHHC----TTSCEEEEECSS
T ss_pred HHHhccCCCeEEEECCCHHHHHHHHHHHHHh----CCCcEEEEecCC
Confidence 888887655332 455666666666666553 359999999863
No 76
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=92.38 E-value=0.13 Score=50.97 Aligned_cols=69 Identities=12% Similarity=0.099 Sum_probs=51.0
Q ss_pred HHHHhhhcCCEEEEeCCCCCCCcCCccccc--CCCCeEEEEcCCchhhccCCCCcceEeccHHHHHHHHHHHh
Q 048725 347 YANYAVDKSDLLLAFGVRFDDRVTGKLEAF--ASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRIL 417 (661)
Q Consensus 347 ~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~--~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 417 (661)
.+.+.+++||++|++|+.+.-+....+... ..++++|.|+.++..+.. ..++.+.+|+.++|..|.+.|
T Consensus 173 ~a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~--~~~~~i~~~~~~~l~~l~~~l 243 (246)
T 1yc5_A 173 EAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDD--IATLKYNMDVVEFARRVMEEG 243 (246)
T ss_dssp HHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEECSSCCTTGG--GCSEEECSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEECCCCcchhHHHHHHHHHHcCCeEEEEeCCCCCCCc--ceeEEEeCCHHHHHHHHHHHc
Confidence 345677899999999998754443333212 236789999999887643 358889999999999998766
No 77
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=92.19 E-value=0.48 Score=43.25 Aligned_cols=131 Identities=16% Similarity=0.197 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCcc--chHHHHH---HHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCC---------
Q 048725 279 HLEQIVRLISESKKPVLYVGGGCL--NSSEELR---KFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHG--------- 344 (661)
Q Consensus 279 ~l~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~---~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g--------- 344 (661)
..++++++|..|++.+|+-|.|.. .+...+. ++.+.-|+-|--- -||..-.+.|...
T Consensus 11 ~~~~~a~~l~~A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~fa---------IHPVAGRMPGhMNVLLAEA~VP 81 (184)
T 1d4o_A 11 NLDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRFG---------IHPVAGRMPGQLNVLLAEAGVP 81 (184)
T ss_dssp CHHHHHHHHHHCSEEEEEECHHHHHTTTHHHHHHHHHHHHHTTCEEEEE---------ECTTCSSSTTHHHHHHHHHTCC
T ss_pred CHHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEE---------eccccccCCCcceEEEEEecCC
Confidence 356888999999999999999863 4554444 4555556665211 2565443444321
Q ss_pred ------cHHHHHhhhcCCEEEEeCCCCCC-------C---cCC--cccccCCCCeEEEEcCCc--hhhcc-----CCCCc
Q 048725 345 ------TVYANYAVDKSDLLLAFGVRFDD-------R---VTG--KLEAFASRAKIVHIDIDS--AEIGK-----NKQPH 399 (661)
Q Consensus 345 ------~~~a~~~l~~aDlvL~vG~~~~~-------~---~t~--~~~~~~~~~~vi~Id~d~--~~i~~-----~~~~~ 399 (661)
-...|.-+.+.|++|++|..-.- . ..| -++-|. ..++|.+-..- ..-|- ..+..
T Consensus 82 Yd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvl~v~k-Ak~ViV~KRsm~~GyAgv~NpLF~~~nt 160 (184)
T 1d4o_A 82 YDIVLEMDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWK-SKQVIVMKRSLGVGYAAVDNPIFYKPNT 160 (184)
T ss_dssp GGGEEEHHHHGGGGGGCSEEEEESCSGGGCTHHHHCTTSTTTTCCCCCGGG-SSCEEEEESSSCCCTTCCCCGGGGSTTE
T ss_pred HHHHHhHHHHhhhhhhcCEEEEecCCccCCCccccCCCCCccCCeeeehhh-CCEEEEEECCCCCCcCCCcCcceecCCc
Confidence 12345667899999999965210 0 011 112222 23455553321 11110 12334
Q ss_pred ceEeccHHHHHHHHHHHhcC
Q 048725 400 VSVCADLKLALKGINRILGG 419 (661)
Q Consensus 400 ~~i~~D~~~~L~~L~~~l~~ 419 (661)
..+.||++..+++|...+..
T Consensus 161 ~MlfGDAK~~~~~l~~~l~~ 180 (184)
T 1d4o_A 161 AMLLGDAKKTCDALQAKVRE 180 (184)
T ss_dssp EEEESCHHHHHHHHHHHHHT
T ss_pred eEEeccHHHHHHHHHHHHHH
Confidence 66899999999999887753
No 78
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=92.18 E-value=0.18 Score=50.11 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=50.5
Q ss_pred HHHhhhcCCEEEEeCCCCCCCcCCccccc--CCCCeEEEEcCCchhhccCCCCcceEeccHHHHHHHHHHHh
Q 048725 348 ANYAVDKSDLLLAFGVRFDDRVTGKLEAF--ASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRIL 417 (661)
Q Consensus 348 a~~~l~~aDlvL~vG~~~~~~~t~~~~~~--~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 417 (661)
+.+.+++||++|++|+.+.-+....+... ..++++|.|+.++..+.. ..++.+.+|+.++|..|.+.+
T Consensus 171 a~~~~~~adlllviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~--~~~~~i~~~~~~~l~~l~~~l 240 (249)
T 1m2k_A 171 AMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTP--IADYSLRGKAGEVMDELVRHV 240 (249)
T ss_dssp HHHHHHHCSEEEEESCCSCSTTGGGHHHHHHHTTCEEEEECSSCCTTGG--GCSEEECSCHHHHHHHHHHHH
T ss_pred HHHHHhcCCEEEEEccCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCc--ceeEEEeCCHHHHHHHHHHHH
Confidence 45667899999999998765443333222 246789999998887643 457889999999999987655
No 79
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=91.80 E-value=0.68 Score=51.94 Aligned_cols=106 Identities=19% Similarity=0.144 Sum_probs=79.4
Q ss_pred hHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCc
Q 048725 507 GLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRE 585 (661)
Q Consensus 507 ~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~ 585 (661)
+.-+|.|.+.+. +++.||++-=| +..-.+..|.+|...++|+++|.-+-....+ +. +..+
T Consensus 62 Aa~~A~Gyar~t-g~p~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~---------g~-------~~~Q-- 122 (590)
T 1ybh_A 62 GVFAAEGYARSS-GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMI---------GT-------DAFQ-- 122 (590)
T ss_dssp HHHHHHHHHHHH-SSCEEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGT---------TT-------TCTT--
T ss_pred HHHHHHHHHHHH-CCCEEEEeccCchHHHHHHHHHHHHhhCCCEEEEeCcCCcccc---------CC-------Cccc--
Confidence 567788887776 56666666555 4445589999999999999999887653211 10 1111
Q ss_pred ccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 586 SEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 586 ~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
..|...+.+.+--+..++.+++++...+++|+. .+||+.|++..|-
T Consensus 123 ---~~d~~~~~~~~~k~~~~v~~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~dv 173 (590)
T 1ybh_A 123 ---ETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKDI 173 (590)
T ss_dssp ---CCCHHHHHGGGSSEEEECCCGGGHHHHHHHHHHHHHSSSCCEEEEEEEHHH
T ss_pred ---ccCHHHHHHHHhCeEEecCCHHHHHHHHHHHHHHHhhCCCceEEEEeCcch
Confidence 168999999998889999999999988888885 3589999998864
No 80
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=91.80 E-value=0.83 Score=51.48 Aligned_cols=118 Identities=17% Similarity=0.160 Sum_probs=84.6
Q ss_pred CeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcc-cccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhc
Q 048725 493 RQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGS-FIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYK 571 (661)
Q Consensus 493 ~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGs-f~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~ 571 (661)
.+++....- ..+.-+|.|.+.+..+++.||++-=|. ..-.+..|.+|...++|+++|.-+-....+ +
T Consensus 66 i~~i~~~~E---~~Aa~~A~GyAr~tgg~~~v~~~TsGpG~~N~~~~l~~A~~~~vPlvvItg~~p~~~~---------~ 133 (616)
T 2pan_A 66 IRHILARHV---EGASHMAEGYTRATAGNIGVCLGTSGPAGTDMITALYSASADSIPILCITGQAPRARL---------H 133 (616)
T ss_dssp CEEEECSSH---HHHHHHHHHHHHHSTTCCEEEEECSTHHHHTSHHHHHHHHHTTCCEEEEEEECCGGGT---------T
T ss_pred CcEEeeCCH---HHHHHHHHHHHHhcCCCceEEEeCCCchHHHHHHHHHHHHhcCCCEEEEecCCccccc---------C
Confidence 455554432 225667888888764567777665553 344589999999999999999988764211 1
Q ss_pred ccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 572 ANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 572 ~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
. +..+ ..|...+.+.+-.+..++.+++++...+++|+. ..||+.|++..|-
T Consensus 134 ~-------~~~Q-----~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~~r~GPV~l~iP~d~ 189 (616)
T 2pan_A 134 K-------EDFQ-----AVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLVDLPFDV 189 (616)
T ss_dssp T-------TCTT-----CCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCCEEEEEEHHH
T ss_pred c-------cccc-----ccCHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcCCCceEEEEcchhh
Confidence 0 1111 168999999998888999999999888888775 3689999998863
No 81
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=91.75 E-value=0.18 Score=50.16 Aligned_cols=69 Identities=13% Similarity=0.099 Sum_probs=50.7
Q ss_pred HHHHhhhcCCEEEEeCCCCCCCcCCccccc--CCCCeEEEEcCCchhhccCCCCcceEeccHHHHHHHHHHHh
Q 048725 347 YANYAVDKSDLLLAFGVRFDDRVTGKLEAF--ASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRIL 417 (661)
Q Consensus 347 ~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~--~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 417 (661)
.+.+.+++||++|++|+.+.-+....+... ..++++|.|+.++..... ..++.+.+|+.++|..|.+.+
T Consensus 176 ~a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~iN~~~~~~d~--~~~~~i~~~~~~~l~~l~~~l 246 (253)
T 1ma3_A 176 EAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADP--IFDVKIIGKAGEVLPKIVEEV 246 (253)
T ss_dssp HHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEEESSCCTTGG--GCSEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEECCCceeccHHHHHHHHHHcCCeEEEEeCCCCCCCC--ceeEEEeCCHHHHHHHHHHHH
Confidence 345677899999999998754443333212 236789999998887643 358899999999999987765
No 82
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=91.64 E-value=0.73 Score=51.46 Aligned_cols=118 Identities=9% Similarity=0.046 Sum_probs=83.6
Q ss_pred CeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhc
Q 048725 493 RQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYK 571 (661)
Q Consensus 493 ~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~ 571 (661)
.+++....-. .+.-+|.|.+.+. +++.+|++-=| +..-.+..+.+|...++|+++|.-+-....+ +
T Consensus 49 i~~i~~~~E~---~Aa~~A~Gyar~t-g~p~v~~~TsGpG~~N~~~~v~~A~~~~~Pll~itg~~~~~~~---------~ 115 (573)
T 2iht_A 49 IDFVLTRHEF---TAGVAADVLARIT-GRPQACWATLGPGMTNLSTGIATSVLDRSPVIALAAQSESHDI---------F 115 (573)
T ss_dssp CEEEECSSHH---HHHHHHHHHHHHH-CSCEEEEECTTHHHHHHHHHHHHHHHHTCCEEEEEEESCGGGC---------C
T ss_pred CeEEeeCCHH---HHHHHHHHHHHHH-CCCEEEEEccCchHHHHHHHHHHHHhhCCCEEEEcccCccccc---------C
Confidence 5555544322 2556788877765 67777777655 3444588999999999999999887654211 1
Q ss_pred ccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 572 ANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 572 ~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
. . +..+ ..|...+.+.+-.+..++.+++++...+++|+. .+||+.|++..|-
T Consensus 116 ~---~---~~~Q-----~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 172 (573)
T 2iht_A 116 P---N---DTHQ-----CLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVDL 172 (573)
T ss_dssp T---T---TSTT-----CCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHTBSSCCCEEEEEEHHH
T ss_pred C---c---Cccc-----cCCHHHHHHhHhhEEEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEecchH
Confidence 0 0 1111 168999999999889999999998888887775 3589999999874
No 83
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=91.52 E-value=0.33 Score=49.77 Aligned_cols=70 Identities=16% Similarity=0.319 Sum_probs=53.1
Q ss_pred HHHHhhhcCCEEEEeCCCCCCCcCCcccc--cCCCCeEEEEcCCchhhccCCCCcceEeccHHHHHHHHHHHhc
Q 048725 347 YANYAVDKSDLLLAFGVRFDDRVTGKLEA--FASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILG 418 (661)
Q Consensus 347 ~a~~~l~~aDlvL~vG~~~~~~~t~~~~~--~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 418 (661)
.+.+.+++||++|++|+++.-+....+-. .....+++.|+.++...+ ...++.|.+++.++|..|.+.|.
T Consensus 199 ~a~~~~~~aDllLViGTSL~V~Paa~l~~~a~~~G~~vviIN~~~t~~d--~~adl~i~g~~~evl~~L~~~Lg 270 (318)
T 3k35_A 199 LADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHD--RHADLRIHGYVDEVMTRLMKHLG 270 (318)
T ss_dssp HHHHHHHTCSEEEEESCCCCSTTGGGHHHHHHHTTCEEEEECSSCCTTG--GGCSEEECSCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCEEEEEccCCCchhhhhhHHHHHhcCCEEEEECCCCCCCC--CcccEEEeCCHHHHHHHHHHHhC
Confidence 34567789999999999986554444321 234678999999887644 35678899999999999998885
No 84
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=91.45 E-value=0.38 Score=50.33 Aligned_cols=68 Identities=12% Similarity=0.142 Sum_probs=48.4
Q ss_pred hhhcCCEEEEeCCCCCCCcCCcccc-cCCCCeEEEEcCCchh-hc-cCCCCcceEeccHHHHHHHHHHHhc
Q 048725 351 AVDKSDLLLAFGVRFDDRVTGKLEA-FASRAKIVHIDIDSAE-IG-KNKQPHVSVCADLKLALKGINRILG 418 (661)
Q Consensus 351 ~l~~aDlvL~vG~~~~~~~t~~~~~-~~~~~~vi~Id~d~~~-i~-~~~~~~~~i~~D~~~~L~~L~~~l~ 418 (661)
.+.+||++|++|+.+.-+....+.. ...++++|.|+.++.. +. .....++.|.+|+..+|..|.+.+.
T Consensus 216 ~~~~aDllLviGTSl~V~Paa~l~~~~~~g~~~v~IN~~~t~~~~~~~~~~d~~i~g~~~evl~~L~~~Lg 286 (361)
T 1q14_A 216 KHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELG 286 (361)
T ss_dssp ---CCCEEEEESCCCCSTTGGGHHHHSCTTSEEEEESSSCCHHHHHTCCTTCEEECSCHHHHHHHHHHHHT
T ss_pred hhccCCEEEEECCCCCchhHHHHHHHHhcCCeEEEEeCCCccccccCcccccEEEeCCHHHHHHHHHHHcC
Confidence 3569999999999987654444432 3346789999998864 21 1234688999999999999988764
No 85
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=91.44 E-value=2.4 Score=48.23 Aligned_cols=116 Identities=16% Similarity=0.127 Sum_probs=83.2
Q ss_pred CeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhc
Q 048725 493 RQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYK 571 (661)
Q Consensus 493 ~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~ 571 (661)
.+++....-. .+.-+|.|.+.+. +++.||++-=| +..-.++.|.+|...++|+++|.-+-....+ +
T Consensus 121 i~~v~~~hE~---~Aa~aAdGyAr~t-Gkpgvv~~TsGpG~~N~~~gia~A~~d~vPllvItG~~~~~~~---------g 187 (677)
T 1t9b_A 121 FNFVLPKHEQ---GAGHMAEGYARAS-GKPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQVPTSAI---------G 187 (677)
T ss_dssp SEEECCSSHH---HHHHHHHHHHHHH-SSCEEEEECSTHHHHTTHHHHHHHHHHTCCEEEEEEECCTTTT---------T
T ss_pred CeEEEeCChH---HHHHHHHHHHHHH-CCCEEEEECCChHHHHHHHHHHHHHHcCCCEEEEeCCCChhhc---------C
Confidence 5666554432 2556788877776 56766666555 4445589999999999999999887654211 1
Q ss_pred ccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeC
Q 048725 572 ANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFP 633 (661)
Q Consensus 572 ~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~ 633 (661)
. +..+ ..|...+.+.+-.+..++.+++++...+++|+. .+||++|++..|
T Consensus 188 ~-------~a~Q-----~~Dq~~i~~~~tk~~~~v~~~~~i~~~i~~A~~~A~~grpGPV~l~lP~D 242 (677)
T 1t9b_A 188 T-------DAFQ-----EADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDLPKD 242 (677)
T ss_dssp S-------CCTT-----CCCHHHHTGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred C-------CCcc-----ccCHHHHhhhheeEEEEcCCHHHHHHHHHHHHHHHhhCCCceEEEEcCHH
Confidence 0 1111 168889999998888999999999888888876 468999999954
No 86
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=91.39 E-value=0.32 Score=50.86 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=52.5
Q ss_pred HHHhhhcCCEEEEeCCCCCCCcCCccc-ccCCCCeEEEEcCCchhhccCCCCcceEeccHHHHHHHHHHHhcC
Q 048725 348 ANYAVDKSDLLLAFGVRFDDRVTGKLE-AFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGG 419 (661)
Q Consensus 348 a~~~l~~aDlvL~vG~~~~~~~t~~~~-~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~ 419 (661)
+.+.+++||++|++|+.+.-+....+- ....+..+|.|+.++... ...++.|.+|+..+|..|.+.+.-
T Consensus 249 a~~~~~~aDllLviGTSL~V~Paa~lv~~~~~~~~~v~IN~~~t~~---~~~dl~i~g~~~~vl~~L~~~lgw 318 (354)
T 2hjh_A 249 IREDILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVKH---AEFDLSLLGYCDDIAAMVAQKCGW 318 (354)
T ss_dssp HHHHTTTCCEEEEESCCCCEETGGGHHHHSCTTSCEEEEESSCCTT---SCCSEEEESCHHHHHHHHHHHHTC
T ss_pred HHHHHhhCCEEEEECcCCCchhHHHHHHHHhcCCcEEEEcCCCCCC---CCcCEEEeCCHHHHHHHHHHHcCC
Confidence 456678999999999998655443332 233467899999988753 247899999999999999998853
No 87
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=91.23 E-value=0.33 Score=50.32 Aligned_cols=70 Identities=16% Similarity=0.308 Sum_probs=52.8
Q ss_pred HHHHhhhcCCEEEEeCCCCCCCcCCcccc--cCCCCeEEEEcCCchhhccCCCCcceEeccHHHHHHHHHHHhc
Q 048725 347 YANYAVDKSDLLLAFGVRFDDRVTGKLEA--FASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILG 418 (661)
Q Consensus 347 ~a~~~l~~aDlvL~vG~~~~~~~t~~~~~--~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 418 (661)
.+.+.+++||++|++|+++.-+....+-. .....++|.|+.++...+ ...++.|.+++.++|..|.+.|.
T Consensus 199 ~A~~~~~~aDllLViGTSL~V~Paa~Lp~~a~~~G~~vviIN~~pT~~d--~~adl~i~g~a~evl~~L~~~Lg 270 (355)
T 3pki_A 199 LADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHD--RHADLRIHGYVDEVMTRLMEHLG 270 (355)
T ss_dssp HHHHHHHHCSEEEEESCCCCSTTGGGTTHHHHHTTCEEEEECSSCCTTG--GGCSEEECSCHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCEEEEEeeCCCchhhhhhHHHHHhcCCEEEEECCCCCCCC--CccCEEEeCCHHHHHHHHHHHhC
Confidence 34567789999999999986554433321 124578999999887654 35678899999999999998875
No 88
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=91.20 E-value=0.89 Score=50.63 Aligned_cols=116 Identities=16% Similarity=0.140 Sum_probs=82.9
Q ss_pred CeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhc
Q 048725 493 RQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYK 571 (661)
Q Consensus 493 ~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~ 571 (661)
.+++....- ..+.-+|.|.+.+. +++.+|++-=| +..-.++.|.+|...++|+++|.-+-....+ +
T Consensus 42 i~~i~~~~E---~~Aa~~A~Gyar~t-g~p~v~~~TsGpG~~N~~~~l~~A~~~~~Pll~itg~~~~~~~---------~ 108 (563)
T 2uz1_A 42 VPIIDTRHE---AAAGHAAEGYARAG-AKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDD---------E 108 (563)
T ss_dssp CCEEECSSH---HHHHHHHHHHHHHH-TSCEEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGT---------T
T ss_pred CcEEeeCCH---HHHHHHHHHHHHHh-CCCEEEEEccCccHHHHHHHHHHHHhcCCCEEEEeCCCCcccC---------C
Confidence 455554432 22566788877775 56777777555 4455589999999999999999887654211 1
Q ss_pred ccccccccCCCCCcccCC-ccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeC
Q 048725 572 ANRAHTYLGDPSRESEIF-PNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFP 633 (661)
Q Consensus 572 ~~~~~~~~g~p~~~~~~~-~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~ 633 (661)
. +..+ . .|...+.+.+-.+..++.+++++...+++|+. .+||+.|++..|
T Consensus 109 ~-------~~~Q-----~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 164 (563)
T 2uz1_A 109 T-------NTLQ-----AGIDQVAMAAPITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWD 164 (563)
T ss_dssp S-------CCTT-----CCCCHHHHHGGGCSEEEECCCGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred c-------hhhh-----hhccHHHHhhhhhceEEEcCCHHHHHHHHHHHHHHhcCCCCceEEEEeCHH
Confidence 1 0001 2 58899999998889999999998888877764 359999999988
No 89
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=91.11 E-value=0.24 Score=49.82 Aligned_cols=66 Identities=9% Similarity=0.036 Sum_probs=49.3
Q ss_pred HHHHhhhcCCEEEEeCCCCCCCcCCcccc--cCCCCeEEEEcCCchhhccCCCCcceEeccHHHHHHHHH
Q 048725 347 YANYAVDKSDLLLAFGVRFDDRVTGKLEA--FASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGIN 414 (661)
Q Consensus 347 ~a~~~l~~aDlvL~vG~~~~~~~t~~~~~--~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~ 414 (661)
.+.+.+++||++|++|+.+.-+....+-. ...+++++.|+.++..... ..++.|.+++..+|..|+
T Consensus 205 ~a~~~~~~aDl~lviGTSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~~d~--~~~~~i~g~~~~~l~~l~ 272 (273)
T 3riy_A 205 EVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATN--RFRFHFQGPCGTTLPEAL 272 (273)
T ss_dssp HHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHTTCCEEEEESSCCTTGG--GSSEEEESCHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEEeeCCcchhHHHhHHHHHHCCCEEEEECCCCCCCCc--ceeEEEeCCHHHHHHHHh
Confidence 34567789999999999986544333311 2357789999998877653 567889999999998874
No 90
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=90.15 E-value=0.4 Score=53.41 Aligned_cols=104 Identities=19% Similarity=0.129 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEecCCCCc-ccC--------C----CCCCCCCHHHH
Q 048725 139 IFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRR-MIG--------T----DAFQETPIVEV 205 (661)
Q Consensus 139 ~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~-~~g--------~----~~~q~~~~~~~ 205 (661)
.-+|.|.+.+.+++.+|++-=| ++.-.++.|..|...+.|+++|.-+.... ..+ . ...+..|...+
T Consensus 422 l~~A~Gaa~a~~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 500 (556)
T 3hww_A 422 LSTAAGVQRASGKPTLAIVGDL-SALYDLNALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSERERFYLMPQNVHFEHA 500 (556)
T ss_dssp HHHHHHHHHHHCCCEEEEEEHH-HHHHTGGGHHHHTTCSSCEEEEEEESCC-----------------CCCCCCCCSHHH
T ss_pred HHHHHHHHhcCCCcEEEEEccH-HhhhcchhhHhhcccCCCcEEEEEECCCCCcccCCCCcchhHHHhccCCCCCCHHHH
Confidence 5678898888888888875444 33334678889999999998887544321 000 0 11234566666
Q ss_pred hhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 206 TRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 206 ~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
.+.+--..+++.+++++.+.+ +.+... .||+.|++..|
T Consensus 501 a~a~G~~~~~v~~~~~l~~al----~~a~~~-~gp~liev~~~ 538 (556)
T 3hww_A 501 AAMFELKYHRPQNWQELETAF----ADAWRT-PTTTVIEMVVN 538 (556)
T ss_dssp HHHTTCEEECCSSHHHHHHHH----HHHTTS-SSEEEEEEECC
T ss_pred HHHcCCcEEecCCHHHHHHHH----HHHHhC-CCCEEEEEECC
Confidence 666654456677766655544 445544 49999999765
No 91
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=90.06 E-value=1.2 Score=50.91 Aligned_cols=114 Identities=17% Similarity=0.038 Sum_probs=77.5
Q ss_pred eEEcc-CChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEecCCCCcccCC--CCCCCCCHHH
Q 048725 128 RNVLP-RHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGT--DAFQETPIVE 204 (661)
Q Consensus 128 ~~v~~-~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~--~~~q~~~~~~ 204 (661)
|++.+ .-|++++.+|.|.|...|..-+|. +..+=+.-+...|..+...+.||+++....... .|. ..+|.+.+..
T Consensus 449 R~~d~GIaE~~mv~~AaGlA~~~G~~Pv~~-~f~~F~~~~~~~ir~~a~~~lpv~~v~thdg~g-vG~dG~THq~~ed~a 526 (711)
T 3uk1_A 449 NHINYGVREFGMSAAINGLVLHGGYKPFGG-TFLTFSDYSRNALRVAALMKVPSIFVFTHDSIG-LGEDGPTHQSVEHVA 526 (711)
T ss_dssp SEEECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTCCSSHHH
T ss_pred cEEEeCccHHHHHHHHHHHHHcCCCEEEEE-EhHHHHHHHHHHHHHhhhcCCCEEEEEECCCcC-cCCCCCccCChhHHH
Confidence 44444 789999999999998646544443 455555556677776677899998876322111 232 2467778889
Q ss_pred Hhhccccccc-ccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 205 VTRSITKHNY-LVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 205 ~~~~itk~~~-~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
+++.+-...+ .+.++.++..+++.|++ ..|||+|.+|..
T Consensus 527 ~lr~iPnl~V~~Pad~~E~~~~l~~Ai~-----~~~Pv~ir~~r~ 566 (711)
T 3uk1_A 527 SLRLIPNLDVWRPADTVETAVAWTYAVA-----HQHPSCLIFSRQ 566 (711)
T ss_dssp HHHTSTTCEEECCSSHHHHHHHHHHHHH-----SSSCEEEECCSS
T ss_pred HHhcCCCCEEEecCCHHHHHHHHHHHHh-----cCCCEEEEeeCC
Confidence 9998866543 45667777777777776 259999998853
No 92
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=89.92 E-value=2.1 Score=47.35 Aligned_cols=116 Identities=15% Similarity=0.223 Sum_probs=75.6
Q ss_pred CeEEccCCh---hHHHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEecCCCCc-cc-------CC
Q 048725 127 IRNVLPRHE---QGGIFAAEGYARSS-GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRR-MI-------GT 194 (661)
Q Consensus 127 i~~v~~~hE---~~A~~~A~Gyar~t-g~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~-~~-------g~ 194 (661)
-+++....- ..+.-+|.|.+.+. +++.+|++-=|. +.-.+..+..|...+.|+++|.-+.... .. +.
T Consensus 397 ~~~~~~~~~g~mG~~l~~AiGaala~~~~~vv~i~GDGs-~~~~~~~L~ta~~~~l~~~ivv~nN~~~g~~~~~~~~~~~ 475 (549)
T 3eya_A 397 RRLLGSFNHGSMANAMPQALGAQATEPERQVVAMCGDGG-FSMLMGDFLSVVQMKLPVKIVVFNNSVLGFVAMEMKAGGY 475 (549)
T ss_dssp CEEECCTTTCCTTCHHHHHHHHHHHSTTSCEEEEEEHHH-HHHTGGGHHHHHHTTCCCEEEEEECSBCCCC---------
T ss_pred CcEEeCCCCchhhhHHHHHHHHHHhCCCCcEEEEEccch-hhccHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHhcCC
Confidence 455544332 34677899998886 677777654342 3334778999999999988776544311 10 00
Q ss_pred ----CCCCCCCHHHHhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 195 ----DAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 195 ----~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
..++..|...+.+.+--..+++.+++++.+.+++|+.. .||+.|++..|
T Consensus 476 ~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~-----~gp~liev~~~ 528 (549)
T 3eya_A 476 LTDGTELHDTNFARIAEACGITGIRVEKASEVDEALQRAFSI-----DGPVLVDVVVA 528 (549)
T ss_dssp ---CCBCCCCCHHHHHHHTTSEEEEECSGGGHHHHHHHHHHS-----SSCEEEEEEBC
T ss_pred CCcCCcCCCCCHHHHHHHcCCcEEEeCCHHHHHHHHHHHHhC-----CCCEEEEEEec
Confidence 11234566677777655556788889988877777642 48999999876
No 93
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=89.51 E-value=1.5 Score=48.76 Aligned_cols=125 Identities=13% Similarity=0.092 Sum_probs=81.2
Q ss_pred CeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhc
Q 048725 493 RQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYK 571 (661)
Q Consensus 493 ~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~ 571 (661)
.+++....-. .+.-+|.|.+.+.. +.+|++-=| +..-.++.+.+|...++|+++|.-+-.....- .
T Consensus 42 i~~i~~~~E~---~Aa~~A~Gyar~tg--~~v~~~TsGpG~~N~~~gia~A~~~~vPll~itg~~~~~~~~--------~ 108 (568)
T 2wvg_A 42 MEQVYCCNEL---NCGFSAEGYARAKG--AAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHA--------A 108 (568)
T ss_dssp SEEEECSSHH---HHHHHHHHHHHHHS--CEEEEECTTTTHHHHHHHHHHHHHTTCCEEEEEEECCGGGTT--------T
T ss_pred ceEeccCcHH---HHHHHHHHHHHhhC--CeEEEEeCCCCHHHHHHHHHHHhhhCCCEEEEeCCCChhHhc--------c
Confidence 5555544322 25667888777653 666666444 33345889999999999999999886643210 0
Q ss_pred ccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHH----hCCCcEEEEEEeCCC
Q 048725 572 ANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTML----DTPGPYLLDVIFPHQ 635 (661)
Q Consensus 572 ~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~----~~~gp~lIeV~~~~~ 635 (661)
....+..+|..+ ..|...+.+.+-.+..++.+++++...+++|+ ...||+.|++..|-.
T Consensus 109 ~~~~~~~~g~~~-----~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~dv~ 171 (568)
T 2wvg_A 109 GHVLHHALGKTD-----YHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIA 171 (568)
T ss_dssp TCBCTTSCSSSC-----CCHHHHHHTTSCSCEEEECSGGGHHHHHHHHHHHHHHHTCCEEEEEEGGGT
T ss_pred Ccceeeeccccc-----hHHHHHHHHhhEeEEEEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechhHh
Confidence 000111112111 14788999999888999999988766666555 346999999999853
No 94
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=89.36 E-value=0.65 Score=50.06 Aligned_cols=68 Identities=15% Similarity=0.143 Sum_probs=52.1
Q ss_pred HHHhhhcCCEEEEeCCCCCCCcCCcc-cccCCCCeEEEEcCCchhhccCCCCcceEeccHHHHHHHHHHHhc
Q 048725 348 ANYAVDKSDLLLAFGVRFDDRVTGKL-EAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILG 418 (661)
Q Consensus 348 a~~~l~~aDlvL~vG~~~~~~~t~~~-~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 418 (661)
+.+.+++||++|++|+++.-+....+ ..+.....+|.|+.++... ...++.+.||+.+++..|.+.|.
T Consensus 387 a~~~~~~aDLlLVIGTSL~VyPaA~Lv~~a~~~~p~ViIN~ept~~---~~~Dl~l~G~cdevv~~L~~~LG 455 (492)
T 4iao_A 387 IREDILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVKH---AEFDLSLLGYCDDIAAMVAQKCG 455 (492)
T ss_dssp HHHHTTTCSEEEEESCCCCEETGGGHHHHSBTTSCEEEEESSCCTT---SCCSEEEESCHHHHHHHHHHHTT
T ss_pred HHHHHhhCCEEEEeccCCCccchhhHHHHHhcCCcEEEEcCCCCCC---CCccEEEeCCHHHHHHHHHHHhC
Confidence 44567899999999999865544333 2334556789999988753 34689999999999999999885
No 95
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=89.13 E-value=1.1 Score=49.92 Aligned_cols=119 Identities=16% Similarity=0.164 Sum_probs=82.0
Q ss_pred CCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhh
Q 048725 492 PRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFY 570 (661)
Q Consensus 492 p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~ 570 (661)
..+++....-. .+.-+|.|.+.+. +++.||++-=| +..-.+..+.+|...++|+++|.-+-....+ . .
T Consensus 45 ~i~~i~~~hE~---~Aa~~A~Gyar~t-g~pgv~~~TsGpG~~N~~~gi~~A~~~~vPll~itg~~~~~~~-----~--~ 113 (564)
T 2q28_A 45 GIRYIGFRHEQ---SAGYAAAASGFLT-QKPGICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAIV-----D--L 113 (564)
T ss_dssp TCEEEECSSHH---HHHHHHHHHHHHH-SSCEEEEECSHHHHHHHHHHHHHHHHHTCCEEEEEEECCHHHH-----H--T
T ss_pred CCcEEeeCCHH---HHHHHHHHHHHHh-CCCEEEEEccCchHHHHHHHHHHHHhcCCCEEEEeCCCCcccc-----C--C
Confidence 35565544322 2456777777765 57777777555 3444488999999999999999988653211 0 0
Q ss_pred cccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeC
Q 048725 571 KANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFP 633 (661)
Q Consensus 571 ~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~ 633 (661)
+. +..+ .+|...+.+.+-.+..++.+++++...+++|+. .+||+.|++..|
T Consensus 114 ~~-------~~~Q-----~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 169 (564)
T 2q28_A 114 QQ-------GDYE-----ELDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPGGVYLDLPAN 169 (564)
T ss_dssp TS-------CCTT-----CCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred CC-------Cccc-----cccHHHHHHHhhheeeecCCHHHHHHHHHHHHHHHhcCCCceEEEEcCHH
Confidence 00 1111 168889999998889999998888777777664 469999999987
No 96
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=89.04 E-value=1.3 Score=49.36 Aligned_cols=124 Identities=15% Similarity=0.113 Sum_probs=80.3
Q ss_pred CeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhc
Q 048725 493 RQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYK 571 (661)
Q Consensus 493 ~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~ 571 (661)
.+++....- ..+.-+|.|.+.+.. +.+|++-=| +..-.++.|.+|...++|+++|.-+-....+ +
T Consensus 42 i~~v~~~~E---~~Aa~~A~Gyar~tg--~~v~~~TsGpG~~N~~~gia~A~~~~vPll~itg~~~~~~~---------~ 107 (566)
T 2vbi_A 42 MKQIYCCNE---LNCGFSAEGYARSNG--AAAAVVTFSVGAISAMNALGGAYAENLPVILISGAPNSNDQ---------G 107 (566)
T ss_dssp SEEEECSSH---HHHHHHHHHHHHHHS--CEEEEECTTTTHHHHHHHHHHHHHTTCCEEEEEEECCGGGT---------T
T ss_pred CeEEeeCcH---HHHHHHHHHHHhhcC--CeEEEEeCCCCHHHHHHHHHHHHhhCCCEEEEECCCChHHh---------c
Confidence 556654432 225667888777763 666665434 3344588999999999999999988664321 1
Q ss_pred ccc-cccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHH----hCCCcEEEEEEeCCC
Q 048725 572 ANR-AHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTML----DTPGPYLLDVIFPHQ 635 (661)
Q Consensus 572 ~~~-~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~----~~~gp~lIeV~~~~~ 635 (661)
... .+..++..+ ..|...+.+.+-.+..++.+++++...+++|+ ...||+.|++..|-.
T Consensus 108 ~~~~~~~~~g~~~-----~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d~~ 171 (566)
T 2vbi_A 108 TGHILHHTIGKTD-----YSYQLEMARQVTCAAESITDAHSAPAKIDHVIRTALRERKPAYLDIACNIA 171 (566)
T ss_dssp TTCBCTTSCSSSC-----CTHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHHHHTCCEEEEEETTTT
T ss_pred cCceeeeeccCcc-----hHHHHHHHhhhEeEEEEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechhhc
Confidence 100 111111111 14788999999888889988887666555555 446999999999854
No 97
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=89.02 E-value=0.83 Score=51.36 Aligned_cols=117 Identities=15% Similarity=0.045 Sum_probs=77.7
Q ss_pred CeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhc
Q 048725 493 RQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYK 571 (661)
Q Consensus 493 ~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~ 571 (661)
.+++....-. .+.-+|.|.+.+. +++.||++-=| +..-.+..+.+|...++|+++|.-+-...-+ +
T Consensus 70 i~~i~~~hE~---~Aa~aA~GyAr~t-gkpgv~~~TsGpG~~N~~~gia~A~~~~vPlv~ItG~~~~~~~---------g 136 (604)
T 2x7j_A 70 ISVHVQIDER---SAGFFALGLAKAK-QRPVLLICTSGTAAANFYPAVVEAHYSRVPIIVLTADRPHELR---------E 136 (604)
T ss_dssp CEEEECSSHH---HHHHHHHHHHHHH-TSCEEEEECSSHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGS---------S
T ss_pred ceEEEecChH---HHHHHHHHHHHhh-CCCEEEEECChhHHHHHHHHHHHHhhcCCCEEEEeCCCCHHHh---------C
Confidence 4555544322 2556778877765 67777777555 3444589999999999999999887653211 1
Q ss_pred ccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHH-------HHHHHHHHH----h-CCCcEEEEEEeCC
Q 048725 572 ANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKAD-------LRAAIQTML----D-TPGPYLLDVIFPH 634 (661)
Q Consensus 572 ~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~e-------l~~al~~a~----~-~~gp~lIeV~~~~ 634 (661)
. +..+ ..|...+.+.+--+..++.++++ +...+++|+ . .+||++|++..|-
T Consensus 137 ~-------~~~Q-----~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d~ 199 (604)
T 2x7j_A 137 V-------GAPQ-----AINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLRE 199 (604)
T ss_dssp S-------CCTT-----CCCCTTTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECCS
T ss_pred C-------CCCC-----cCcHHHHhhhheeeeeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcccCc
Confidence 0 1111 15666777777778888887775 555555555 3 5799999999884
No 98
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=88.98 E-value=1.7 Score=48.75 Aligned_cols=116 Identities=12% Similarity=0.060 Sum_probs=81.6
Q ss_pred CeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhc
Q 048725 493 RQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYK 571 (661)
Q Consensus 493 ~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~ 571 (661)
.+++....- ..+.-+|.|.+.+. +++.||++-=| +....++.|..|...++|+++|.-+-....+ +
T Consensus 44 i~~i~~~~E---~~Aa~~A~GyAr~t-gk~~v~~~tsGpG~~N~~~gl~~A~~~~vPll~Itg~~p~~~~---------g 110 (590)
T 1v5e_A 44 VKFLQVKHE---EVGAMAAVMQSKFG-GNLGVTVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQREL---------N 110 (590)
T ss_dssp CEEEECSSH---HHHHHHHHHHHHTT-CCCCEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGT---------T
T ss_pred CeEEeeCCH---HHHHHHHHHHHHHH-CCCEEEEeCcChHHHHHHHHHHHHHhcCCCEEEEcCCCCcccC---------C
Confidence 455554432 22667888888776 56666666555 4445589999999999999999988754211 1
Q ss_pred ccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 572 ANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 572 ~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
. +..+ ..|...+.+.+-.+..++.+++++...+++|+. .+||++| +..|-
T Consensus 111 ~-------~~~Q-----~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l-iP~dv 165 (590)
T 1v5e_A 111 M-------DAFQ-----ELNQNPMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKRGVAVLE-VPGDF 165 (590)
T ss_dssp T-------TCTT-----CCCCHHHHHTTCSEEEECCSGGGHHHHHHHHHHHHHHTTSEEEEE-EETTG
T ss_pred C-------Cccc-----ccCHHHHHHhhccEEEEeCCHHHHHHHHHHHHHHHhcCCCceEEE-Eccch
Confidence 0 0011 158888999998888899999988877777764 3489999 88874
No 99
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=88.89 E-value=1 Score=51.37 Aligned_cols=113 Identities=14% Similarity=0.038 Sum_probs=72.0
Q ss_pred EccCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEecCCCCcccCC--CCCCCCCHHHHhh
Q 048725 130 VLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGT--DAFQETPIVEVTR 207 (661)
Q Consensus 130 v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~--~~~q~~~~~~~~~ 207 (661)
-...-|++++.+|.|.|...|..-+| .|..+-..-+-.++..+...+.||+++....... .|. ..+|.+.+..+++
T Consensus 431 d~GIaE~~mv~~A~GlA~~gG~~P~~-~tf~~Fs~f~~~air~~al~~lpVv~v~~~~gig-vG~dG~THq~ied~a~lr 508 (690)
T 3m49_A 431 WYGVREFAMGAAMNGIALHGGLKTYG-GTFFVFSDYLRPAIRLAALMQLPVTYVFTHDSIA-VGEDGPTHEPIEQLAALR 508 (690)
T ss_dssp ECCSCHHHHHHHHHHHHHHSSCEEEE-EEEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGG-GCTTCGGGCCSSHHHHHH
T ss_pred EcCchHHHHHHHHHHHHHcCCCEEEE-EecHHHHHHHHHHHHHHHhcCCCcEEEEECCCcC-CCCCCCccCCHHHHHHHh
Confidence 34479999999999999985543343 2444434434556666778899998886322211 232 2357777889999
Q ss_pred ccccccc-ccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 208 SITKHNY-LVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 208 ~itk~~~-~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
.+-...+ .+.++.++..++ +.|.....|||+|.+|+.
T Consensus 509 ~iPnl~V~~Pad~~E~~~~l----~~Ai~~~~~Pv~ir~~R~ 546 (690)
T 3m49_A 509 AMPNVSVIRPADGNESVAAW----RLALESTNKPTALVLTRQ 546 (690)
T ss_dssp TSTTCEEECCSSHHHHHHHH----HHHHHCSSSCEEEECCSS
T ss_pred cCCCCEEEeeCCHHHHHHHH----HHHHHcCCCCEEEEeecc
Confidence 8866543 344555555544 445544469999998863
No 100
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=88.89 E-value=1.2 Score=49.50 Aligned_cols=105 Identities=17% Similarity=0.142 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhCCcEEEEEccchhhHH-HHHHHHHhhhCCCcEEEEecCCCC--cccCC----CC-----CCCCCHHH
Q 048725 137 GGIFAAEGYARSSGKPGICIATSGPGATN-LVSGLADALLDSVPLVAITGQVPR--RMIGT----DA-----FQETPIVE 204 (661)
Q Consensus 137 ~A~~~A~Gyar~tg~~gv~~~tsGpG~~N-~l~gl~~A~~~~iPll~ItG~~p~--~~~g~----~~-----~q~~~~~~ 204 (661)
.+.-+|.|.+.+.+++.+|++ |=|... .+..+..|...+.|+++|.-+... ..... +. ....|...
T Consensus 430 ~~l~~AiGaala~~~~vv~i~--GDGsf~~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 507 (568)
T 2c31_A 430 IGMGYCVAAAAVTGKPVIAVE--GDSAFGFSGMELETICRYNLPVTVIIMNNGGIYKGNEADPQPGVISCTRLTRGRYDM 507 (568)
T ss_dssp CHHHHHHHHHHHHCSCEEEEE--EHHHHHTTGGGHHHHHHTTCCEEEEEEESSBSSCSCCCCSBTTBCCTTBCCCCCHHH
T ss_pred ccHHHHHHHHhCCCCcEEEEE--cchHhhccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHhhcCCcccCcCCCCCHHH
Confidence 456778888888888888765 433333 367888899999999888765442 11100 00 23456667
Q ss_pred HhhcccccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 205 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 205 ~~~~itk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
+.+.+--..+++.+++++.+.+++|+.. .||+.|++..+
T Consensus 508 ~a~a~G~~~~~v~~~~el~~al~~a~~~-----~~p~liev~~~ 546 (568)
T 2c31_A 508 MMEAFGGKGYVANTPAELKAALEEAVAS-----GKPCLINAMID 546 (568)
T ss_dssp HHHTTTCEEEEESSHHHHHHHHHHHHHH-----TSCEEEEEEBC
T ss_pred HHHHcCCeEEEeCCHHHHHHHHHHHHhC-----CCCEEEEEEec
Confidence 7777655556788888887777777642 48999999876
No 101
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=88.81 E-value=0.56 Score=48.29 Aligned_cols=112 Identities=15% Similarity=0.217 Sum_probs=73.8
Q ss_pred cEEEEcC-Ccc--chHHHHHHHHHHhCCCeeecCC--CCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCC
Q 048725 293 PVLYVGG-GCL--NSSEELRKFVELTGIPVASTLM--GLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDD 367 (661)
Q Consensus 293 PvIv~G~-g~~--~a~~~l~~lae~lg~PV~tt~~--gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~ 367 (661)
.+|+.|+ |.. ...+.+.+||++||.-|-+|-. -.|.+|. .+..|..| . .+..|+|-|++|.+=.-
T Consensus 203 ~ivVsgGRG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~--~~QVGqTG---k-----~V~P~~lYiA~GISGAi 272 (320)
T 1o97_D 203 DFIMSIGRGIGEETNVEQFRELADEAGATLCCSRPIADAGWLPK--SRQVGQSG---K-----VVGSCKLYVAMGISGSI 272 (320)
T ss_dssp SEEEEECGGGCSGGGHHHHHHHHHHHTCEEEECHHHHHTTSSCG--GGBBSTTS---B-----CCTTCSEEEEESCCCCH
T ss_pred CEEEEcCCccCChHHHHHHHHHHHHhCCceeecHHHHhCCCCCh--hhEeecCc---e-----EecccceEEEEeccCcH
Confidence 3566655 443 3468899999999999977622 2466654 44444433 2 35667999999966211
Q ss_pred CcCCcccccCCCCeEEEEcCCchhhccCCCCcceEeccHHHHHHHHHHHhc
Q 048725 368 RVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILG 418 (661)
Q Consensus 368 ~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 418 (661)
.. +.-......+|-|+-|++.- -+...|+.|++|+.+++.+|.+.++
T Consensus 273 QH---laGm~~s~~IVAIN~D~~Ap-IF~~ADygiVgDl~~vvP~L~~~l~ 319 (320)
T 1o97_D 273 QH---MAGMKHVPTIIAVNTDPGAS-IFTIAKYGIVADIFDIEEELKAQLA 319 (320)
T ss_dssp HH---HHHHTTCSEEEEECSCTTCG-GGGTCSEEECSCHHHHHHHHHHHC-
T ss_pred HH---HhhcccCCEEEEEeCCCCCC-cccccCeEEeeeHHHHHHHHHHHHh
Confidence 11 11123345688899888742 1346799999999999999998763
No 102
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=87.76 E-value=1.8 Score=45.37 Aligned_cols=113 Identities=19% Similarity=0.143 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHHHHh---CCcEEEEEccchhhHHH---HHHHHHhhhCCCcEEEEecCCCCcccCC--CCCCCCCHHHHh
Q 048725 135 EQGGIFAAEGYARSS---GKPGICIATSGPGATNL---VSGLADALLDSVPLVAITGQVPRRMIGT--DAFQETPIVEVT 206 (661)
Q Consensus 135 E~~A~~~A~Gyar~t---g~~gv~~~tsGpG~~N~---l~gl~~A~~~~iPll~ItG~~p~~~~g~--~~~q~~~~~~~~ 206 (661)
=....-+|.|.+++. |.-.++++..|=|.++. .-++..|...+.|+|+|.-+........ ......+...++
T Consensus 144 lG~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a 223 (368)
T 1w85_A 144 IGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKA 223 (368)
T ss_dssp TTHHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGG
T ss_pred cCccccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCCccceeccccccCCCCHHHHH
Confidence 344566778888775 22233344457776662 2356678889999999985442111100 111112334444
Q ss_pred hcccccccccC--CcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 207 RSITKHNYLVL--DVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 207 ~~itk~~~~v~--~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
+.+--....|. +++++...+++|+..+..+. ||+.|++-..
T Consensus 224 ~a~G~~~~~VdG~D~~av~~a~~~A~~~~r~~~-gP~lIe~~t~ 266 (368)
T 1w85_A 224 VAAGIPGIQVDGMDPLAVYAAVKAARERAINGE-GPTLIETLCF 266 (368)
T ss_dssp GGTTCCEEEEETTCHHHHHHHHHHHHHHHHTTS-CCEEEEEECC
T ss_pred HHCCCCEEEEcCCCHHHHHHHHHHHHHHHHhcC-CCEEEEEEee
Confidence 44433333454 57788888888888877665 8999998654
No 103
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=87.61 E-value=0.94 Score=49.97 Aligned_cols=120 Identities=10% Similarity=-0.018 Sum_probs=79.4
Q ss_pred CCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhh
Q 048725 492 PRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFY 570 (661)
Q Consensus 492 p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~ 570 (661)
..+++....- ..+.-+|.|.+.+. +++.||++-=| +..-.++.|.+|...++|+++|.-+-....+
T Consensus 38 ~i~~i~~~~E---~~Aa~~A~Gyar~t-g~~~v~~~tsGpG~~N~~~~l~~A~~~~~Pll~itg~~~~~~~--------- 104 (528)
T 1q6z_A 38 DFRYILALQE---ACVVGIADGYAQAS-RKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMI--------- 104 (528)
T ss_dssp TCEEEECSSH---HHHHHHHHHHHHHH-TSCEEEEEEHHHHHHHTHHHHHHHHHTTCCEEEEEEECCHHHH---------
T ss_pred cCcEEEECcH---HHHHHHHHHHHHHh-CCCEEEEEcCChHHHHHHHHHHHHhhcCCCEEEEeCCCccccc---------
Confidence 3566655443 22566788887776 56666655433 4445588999999999999999887653211
Q ss_pred cccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 048725 571 KANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPHQ 635 (661)
Q Consensus 571 ~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~~ 635 (661)
+....+ . .+|...+.+.+-.+..++.+++++...+++|+. .+||+.|++..|-.
T Consensus 105 ~~~~~q-------~----~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d~~ 163 (528)
T 1q6z_A 105 GVEALL-------T----NVDAANLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDW 163 (528)
T ss_dssp TTTCTT-------C----CTTGGGSSTTSCSCEECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGGGT
T ss_pred CCCccc-------c----cccHHHHHHHhhHhhhcCCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhhh
Confidence 111000 0 036666777776678888888888777777664 45899999999853
No 104
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=87.60 E-value=1.1 Score=50.33 Aligned_cols=118 Identities=14% Similarity=0.071 Sum_probs=78.9
Q ss_pred CCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhh
Q 048725 492 PRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFY 570 (661)
Q Consensus 492 p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~ 570 (661)
..+++....-. .+.-+|.|.+... +++.||++==| +....++.|.+|...++|+++|.-+-....+
T Consensus 50 ~i~~i~~~hE~---~Aa~aA~GyAr~t-g~~gv~~~TsGpG~~N~~~gia~A~~~~vPvl~itG~~~~~~~--------- 116 (603)
T 4feg_A 50 RIHYIQVRHEE---VGAMAAAADAKLT-GKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGM--------- 116 (603)
T ss_dssp TSEEEECSSHH---HHHHHHHHHHHHH-SSCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEECCTTTT---------
T ss_pred CCeEEEecChH---HHHHHHHHHHHHh-CCceEEEecCCchHHHHHHHHHHHHHcCCCEEEEecCCccccc---------
Confidence 35666554322 2556777877665 56777776555 4455589999999999999999886543211
Q ss_pred cccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHH----hCCCcEEEEEEeCC
Q 048725 571 KANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTML----DTPGPYLLDVIFPH 634 (661)
Q Consensus 571 ~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~----~~~gp~lIeV~~~~ 634 (661)
+. +..+ ..|...+.+.+-.+..++.+++++...+++|+ ..+||++|++..|-
T Consensus 117 ~~-------~~~Q-----~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~dv 172 (603)
T 4feg_A 117 NM-------DTFQ-----EMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYAHQGVAVVQIPVDL 172 (603)
T ss_dssp TS-------CCTT-----CCCCGGGGTTTCSEEEECCCSTTHHHHHHHHHHHHHHHTSEEEEEEETTG
T ss_pred CC-------Cccc-----cccHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHhcCCCCEEEEeChhh
Confidence 00 0111 14666777777777888988888766666555 45799999998873
No 105
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=87.30 E-value=1.1 Score=46.05 Aligned_cols=110 Identities=19% Similarity=0.258 Sum_probs=72.8
Q ss_pred EEEEcC-Ccc--chHHHHHHHHHHhCCCeeecCC--CCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCC
Q 048725 294 VLYVGG-GCL--NSSEELRKFVELTGIPVASTLM--GLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDR 368 (661)
Q Consensus 294 vIv~G~-g~~--~a~~~l~~lae~lg~PV~tt~~--gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~ 368 (661)
+|+.|+ |.. ...+.+.+||++||.-|-+|-. -.|.+|. .+..|..| . .=.++|-|++|.+=.-.
T Consensus 199 ivVsgGrG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~--~~QVGqTG---k------~V~P~lYiA~GISGAiQ 267 (315)
T 1efv_A 199 VVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPN--DMQVGQTG---K------IVAPELYIAVGISGAIQ 267 (315)
T ss_dssp EEEEECGGGCSTGGGHHHHHHHHHHTCEEEECHHHHHTTSSCG--GGBBSTTS---B------CCCCSEEEEESCCCCHH
T ss_pred EEEEcCCcCCChHHHHHHHHHHHHhCCceeecHHHHhCCCCCH--HheeccCC---c------ccCcceEEEecccCcHH
Confidence 566654 443 2457899999999999977622 2466654 44444433 2 23689999999662111
Q ss_pred cCCcccccCCCCeEEEEcCCchhhccCCCCcceEeccHHHHHHHHHHHhc
Q 048725 369 VTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILG 418 (661)
Q Consensus 369 ~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 418 (661)
.. .-......+|-|+-|++.- -+...|+.|++|+.+++.+|.+.++
T Consensus 268 Hl---aGm~~s~~IVAIN~D~~Ap-If~~ADygiVgDl~~v~P~L~~~l~ 313 (315)
T 1efv_A 268 HL---AGMKDSKTIVAINKDPEAP-IFQVADYGIVADLFKVVPEMTEILK 313 (315)
T ss_dssp HH---TTTTTCSEEEEEESCTTCG-GGGTCSEEEESCHHHHHHHHHHHTC
T ss_pred HH---hhcccCCEEEEEeCCCCCC-cchhcCeEEeeeHHHHHHHHHHHHh
Confidence 11 1122345688899888741 1346799999999999999999874
No 106
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=87.26 E-value=2.3 Score=47.21 Aligned_cols=124 Identities=19% Similarity=0.101 Sum_probs=76.4
Q ss_pred CeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhc
Q 048725 493 RQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYK 571 (661)
Q Consensus 493 ~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~ 571 (661)
.+++....-. .+.-+|.|.+.+. + +.+|++-=| +....++.+.+|...++|+++|.-+-..... . .
T Consensus 43 i~~v~~~~E~---~Aa~~A~Gyar~t-g-~~v~~~TsGpG~~N~~~gia~A~~~~~Pll~itg~~~~~~~-----~---~ 109 (563)
T 2vk8_A 43 MRWAGNANEL---NAAYAADGYARIK-G-MSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQ-----A---K 109 (563)
T ss_dssp CEECCCSSHH---HHHHHHHHHHHHH-S-CEEEEEETTHHHHHHHHHHHHHHHHTCCEEEEEEECCHHHH-----H---T
T ss_pred ceEEccCchH---HHHHHHHHHHHhh-C-CcEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEECCCChHHh-----h---c
Confidence 4555443322 2556778877765 3 555555433 3334588999999999999999987553211 0 0
Q ss_pred ccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHH----HHHHHHhCCCcEEEEEEeCC
Q 048725 572 ANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRA----AIQTMLDTPGPYLLDVIFPH 634 (661)
Q Consensus 572 ~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~----al~~a~~~~gp~lIeV~~~~ 634 (661)
....|...|... +-|+.++.+.+-.+..++.+++++.. |++.++...||+.|++..|-
T Consensus 110 ~~~~~~~~g~~~-----~q~~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~d~ 171 (563)
T 2vk8_A 110 QLLLHHTLGNGD-----FTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRPVYLGLPANL 171 (563)
T ss_dssp TCCCTTSCSSSC-----SSHHHHHHHTTCSEEEECCCTTTHHHHHHHHHHHHHHHTSCEEEEEETTG
T ss_pred ccccccccCCcc-----hHHHHHHhhhhEEEEEEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechhh
Confidence 111222222210 12678888888888889988665544 45555545699999999984
No 107
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=87.05 E-value=3.2 Score=47.30 Aligned_cols=157 Identities=11% Similarity=0.015 Sum_probs=92.9
Q ss_pred CCCcHHHHHHHHHHHCCC--CEEEeccCCCcHHH------HHHHHc-C------CC---CeEEcc-CChhHHHHHHHHHH
Q 048725 86 QPRKGADILVEALERQGV--TDVFAYPGGASMEI------HQALTR-S------NN---IRNVLP-RHEQGGIFAAEGYA 146 (661)
Q Consensus 86 ~~~~gad~lv~~L~~~GV--~~vFg~PG~~~~~l------~~aL~~-~------~~---i~~v~~-~hE~~A~~~A~Gya 146 (661)
.++.-.+++-+.|.++.= ..++++-.+-...- ...+.+ . +. =|++.+ .-|++++.+|.|.|
T Consensus 373 ~~~atr~a~~~~L~~l~~~~p~vv~~saDl~~s~~t~~~~~~~f~~~~~~~~~~p~~~~~R~id~GIaE~~mv~~A~GlA 452 (700)
T 3rim_A 373 KALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGPPSISTKEYTAHWYGRTLHFGVREHAMGAILSGIV 452 (700)
T ss_dssp SCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEESCGGGCCSSCCEETTCCEEECCSCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCcccccchhhcccccccccCCcccCCceeecCccHHHHHHHHHHHH
Confidence 345566777777766543 35665544321110 011211 1 11 145544 89999999999999
Q ss_pred HHhCCcEEEEEccchhhHHHHHHHHHhhhCCCcEEEEecCCCCcccCC--CCCCCCCHHHHhhccccccc-ccCCcCcHH
Q 048725 147 RSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGT--DAFQETPIVEVTRSITKHNY-LVLDVDDIP 223 (661)
Q Consensus 147 r~tg~~gv~~~tsGpG~~N~l~gl~~A~~~~iPll~ItG~~p~~~~g~--~~~q~~~~~~~~~~itk~~~-~v~~~~~i~ 223 (661)
...|..-+|- |..+=+.-+.+.+..+...+.||+++....... .|. ..+|-+.+..+++.+....+ .+.++.++.
T Consensus 453 ~~gG~~Pv~~-tF~~F~d~~~~~ir~~al~~lpvv~v~thdg~g-vG~dG~THq~ied~a~lr~iPnl~V~~Pad~~e~~ 530 (700)
T 3rim_A 453 LHGPTRAYGG-TFLQFSDYMRPAVRLAALMDIDTIYVWTHDSIG-LGEDGPTHQPIEHLSALRAIPRLSVVRPADANETA 530 (700)
T ss_dssp HHSSCEEEEE-EEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTSCSSHHHHHHTSTTCEEECCSSHHHHH
T ss_pred HcCCCEEEEE-ecHHHHHHHHHHHHHhcCCCCCEEEEEeCCCcc-cCCCCCccCChhHHHHHhcCCCCEEEeCCCHHHHH
Confidence 8855444442 555544456667777788899998875322111 232 34677888899998865433 344555555
Q ss_pred HHHHHHHHHhhcCCC--ceEEEEeccc
Q 048725 224 RIVREAFLLATSGRP--GPVLIDVPKD 248 (661)
Q Consensus 224 ~~i~~A~~~a~s~~~--GPV~I~iP~d 248 (661)
.++ +.|...+. |||+|.+|..
T Consensus 531 ~~l----~~Ai~~~~~~~Pv~ir~~r~ 553 (700)
T 3rim_A 531 YAW----RTILARRNGSGPVGLILTRQ 553 (700)
T ss_dssp HHH----HHHHTTTTCSSCEEEECCSS
T ss_pred HHH----HHHHHccCCCCCEEEEeccc
Confidence 544 44554444 7999999863
No 108
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=87.03 E-value=2.1 Score=47.32 Aligned_cols=124 Identities=19% Similarity=0.175 Sum_probs=76.3
Q ss_pred CeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhc
Q 048725 493 RQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYK 571 (661)
Q Consensus 493 ~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~ 571 (661)
.+++....-. .+.-+|.|.+.+. + +.+|++-=| +..-.+..+.+|...++|+++|.-+-..... ..
T Consensus 44 i~~i~~~~E~---~A~~~A~Gyar~t-g-~~v~~~tsGpG~~N~~~gv~~A~~~~~Pll~itg~~p~~~~-----~~--- 110 (552)
T 1ovm_A 44 ICWVGCANEL---NASYAADGYARCK-G-FAALLTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQ-----QR--- 110 (552)
T ss_dssp CEEEECSSHH---HHHHHHHHHHHHH-S-CEEEEEETTHHHHHTHHHHHHHHHTTCCEEEEEEECCHHHH-----HH---
T ss_pred ceEEeeCcHH---HHHHHHHHHHHhh-C-CcEEEEccCCcHHHHHHHHHHHhhhcCCEEEEECCCCHHHH-----hc---
Confidence 4555544322 2566778877775 3 455555333 4445588999999999999999987653211 10
Q ss_pred ccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCC---HHHHHHHHHHHHhCCCcEEEEEEeCC
Q 048725 572 ANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTR---KADLRAAIQTMLDTPGPYLLDVIFPH 634 (661)
Q Consensus 572 ~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~---~~el~~al~~a~~~~gp~lIeV~~~~ 634 (661)
....+..++... +-|+.++.+.+-.+..++.+ ++.++.|++.+....||+.|++..|-
T Consensus 111 ~~~~~~~~g~~~-----~q~~~~~~~~~tk~~~~v~~~~~~~~i~~A~~~a~~~~GPV~l~iP~d~ 171 (552)
T 1ovm_A 111 GELLHHTLGDGE-----FRHFYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRERRPGYLMLPADV 171 (552)
T ss_dssp TCCCTTSCSSSC-----CSHHHHHTGGGCSEEEECCTTTHHHHHHHHHHHHHHHTCCEEEEEEHHH
T ss_pred ccccccccCCCc-----HHHHHHHHHhheeEEEEEccccHHHHHHHHHHHHHhCCCCEEEEeehhh
Confidence 111222222210 12577788888888888888 33445555555544699999998863
No 109
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=86.96 E-value=1.9 Score=48.03 Aligned_cols=111 Identities=17% Similarity=0.054 Sum_probs=73.1
Q ss_pred hHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCc
Q 048725 507 GLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRE 585 (661)
Q Consensus 507 ~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~ 585 (661)
+.-+|.|.+.+. +++.||++-=| +..-.++.+.+|...++|+++|.-+-....+ +.... .....+
T Consensus 71 Aa~~A~GyAr~t-gkp~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~---------~~~~~--~~~~~q-- 136 (565)
T 2nxw_A 71 VGFAADAAARYS-STLGVAAVTYGAGAFNMVNAVAGAYAEKSPVVVISGAPGTTEG---------NAGLL--LHHQGR-- 136 (565)
T ss_dssp HHHHHHHHHHHH-TSCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEECCTTCC-----------CCC--C-------
T ss_pred HHHHHHHHHHHh-CCCeEEEECCCCCHHHHHHHHHHHHhhCCCEEEEeCCCChhhh---------ccCcc--eeeecc--
Confidence 455778877765 56777776544 4445589999999999999999887543211 00000 000000
Q ss_pred ccCCcc-HHHHHhHcCCCEeeeCCHHHHHHHHHHHH----hCCCcEEEEEEeCC
Q 048725 586 SEIFPN-MLKFAEACGIPGAQVTRKADLRAAIQTML----DTPGPYLLDVIFPH 634 (661)
Q Consensus 586 ~~~~~d-~~~~A~a~G~~~~~v~~~~el~~al~~a~----~~~gp~lIeV~~~~ 634 (661)
..| ...+.+.+-.+..++.+++++...+++|+ ..+||+.|++..|-
T Consensus 137 ---~~d~q~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv 187 (565)
T 2nxw_A 137 ---TLDTQFQVFKEITVAQARLDDPAKAPAEIARVLGAARAQSRPVYLEIPRNM 187 (565)
T ss_dssp -----CHHHHHHTTSCSCEEECCCTTTHHHHHHHHHHHHHHHTCCEEEEEEGGG
T ss_pred ---chhhHHHHHHhhheEEEEeCCHHHHHHHHHHHHHHHHhCCCCEEEECChhh
Confidence 145 77888888888889988887766666655 35799999999764
No 110
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=86.69 E-value=2.4 Score=47.46 Aligned_cols=106 Identities=13% Similarity=0.068 Sum_probs=71.0
Q ss_pred hHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCc
Q 048725 507 GLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRE 585 (661)
Q Consensus 507 ~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~ 585 (661)
+.-+|.|.+.+. +++.+|++-=| +..-.+..+.+|...++|+++|.-+-....+ +.. ..+ +
T Consensus 55 Aa~~A~GyAr~t-g~p~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~---------~~~---~~~---Q-- 116 (589)
T 2pgn_A 55 GAWMVNGYNYVK-DRSAAVGAWHCVGNLLLHAAMQEARTGRIPAVHIGLNSDGRLA---------GRS---EAA---Q-- 116 (589)
T ss_dssp HHHHHHHHHHHH-TSCCEEEEEEGGGGGGCHHHHHHHHHTTCCEEEEEEESCGGGT---------TCT---TCS---S--
T ss_pred HHHHHHHHHHHH-CCCEEEEEecCchHHHHHHHHHHHHhcCCCEEEEecCCccccc---------CCC---Ccc---c--
Confidence 556778877765 45544444333 4445589999999999999999887654221 100 011 1
Q ss_pred ccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 048725 586 SEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-----TPGPYLLDVIFPH 634 (661)
Q Consensus 586 ~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIeV~~~~ 634 (661)
..|... .+.+-.+..++.+++++...+++|+. .+||+.|++..|-
T Consensus 117 ---~~d~~~-~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 166 (589)
T 2pgn_A 117 ---QVPWQS-FTPIARSTQRVERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFDL 166 (589)
T ss_dssp ---CCCGGG-GTTTSSEEEECCSGGGHHHHHHHHHHHHTSSSCCEEEEEEETHH
T ss_pred ---ccChhh-ccccEEEEeecCCHHHHHHHHHHHHHHHhcCCCccEEEEeCHhh
Confidence 146555 56666667899999988888887774 3589999998873
No 111
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=85.00 E-value=1.3 Score=49.37 Aligned_cols=117 Identities=15% Similarity=0.129 Sum_probs=73.3
Q ss_pred CCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhh
Q 048725 492 PRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFY 570 (661)
Q Consensus 492 p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~ 570 (661)
..+++....-. .+.-+|.|.+.+. +++.||++==| +..-.+..|.+|...++|+++|.-+-... ..
T Consensus 49 ~i~~i~~~hE~---~Aa~aAdGyAr~t-G~pgv~~~TsGpG~~N~~~gia~A~~d~vPll~itG~~p~~-~~-------- 115 (578)
T 3lq1_A 49 ILKIYVDVDER---SAGFFALGLAKAS-KRPVVLLCTSGTAAANYFPAVAEANLSQIPLIVLTADRPHE-LR-------- 115 (578)
T ss_dssp SCEEEECSSHH---HHHHHHHHHHHHH-CCCEEEEECSSHHHHTTHHHHHHHHHTTCCEEEEEEECCGG-GT--------
T ss_pred CceEEEecCcH---HHHHHHHHHHHhh-CCCEEEEECCchhhhhhhHHHHHHHhcCCCeEEEeCCCCHH-hh--------
Confidence 35555544322 2455778877776 56777776545 44445889999999999999998764321 10
Q ss_pred cccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHH-----------HHHHHHHHHh-CCCcEEEEEEeC
Q 048725 571 KANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKAD-----------LRAAIQTMLD-TPGPYLLDVIFP 633 (661)
Q Consensus 571 ~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~e-----------l~~al~~a~~-~~gp~lIeV~~~ 633 (661)
+. +..+ .+|...+.+.+--+..++.++++ +++|+..|.. .+||++|++..|
T Consensus 116 g~-------~~~Q-----e~d~~~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GPV~l~iP~d 178 (578)
T 3lq1_A 116 NV-------GAPQ-----AMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPLR 178 (578)
T ss_dssp TS-------SCTT-----CCCCTTTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCCEEEEEECC
T ss_pred cC-------CCCC-----CcCHhhHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCcEEEECccC
Confidence 11 1111 14666677777667778776654 3444444444 379999999986
No 112
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=84.50 E-value=3.2 Score=43.51 Aligned_cols=111 Identities=15% Similarity=0.084 Sum_probs=64.9
Q ss_pred CCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEE-ECCcccccChHHHHH-HHHc--------CCCeEEEEEeCCcchh
Q 048725 492 PRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDI-DGDGSFIMNVQELAT-IKVE--------KLPIKILLLNNQHLGM 561 (661)
Q Consensus 492 p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i-~GDGsf~~~~~eL~t-a~~~--------~lpv~ivV~NN~g~g~ 561 (661)
|.+++..+- +=-..+++|.|+++.. -++++.+ .+|.. +.....|.+ ++.. ++|+++++-+-++.+
T Consensus 97 p~r~~d~gI--aE~~~v~~a~G~A~~G-~rpv~~~tf~~Fl-~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~~g- 171 (369)
T 1ik6_A 97 PERVIDTPL--NEGGILGFAMGMAMAG-LKPVAEIQFVDFI-WLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTR- 171 (369)
T ss_dssp TTTEEECCS--CHHHHHHHHHHHHHTT-CEEEEECCCC-----CCHHHHHHHHHHHHC------CCCCEEEEEECC----
T ss_pred CCcEEECcc--cHHHHHHHHHHHHHCC-CeeEEEecchhHH-HHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCCCC-
Confidence 567765421 1012578889988873 4555555 78855 345555544 4433 899988876544211
Q ss_pred HHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHc-CCCEeeeCCHHHHHHHHHHHHhCCCcEEEE
Q 048725 562 VMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEAC-GIPGAQVTRKADLRAAIQTMLDTPGPYLLD 629 (661)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lIe 629 (661)
. . ..|. ..+ ..+-++. |+..+...++.|+..+++.+++.++|++|-
T Consensus 172 --~-------g-~~hs-----------~~~-~a~l~~iPnl~V~~Psd~~e~~~ll~~A~~~~~Pv~i~ 218 (369)
T 1ik6_A 172 --G-------G-LYHS-----------NSP-EAIFVHTPGLVVVMPSTPYNAKGLLKAAIRGDDPVVFL 218 (369)
T ss_dssp -----------------------------H-HHHHHTCTTCEEECCCSHHHHHHHHHHHHHSSSCEEEE
T ss_pred --C-------C-cccc-----------ccH-HHHHcCCCCcEEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 0 0010 023 2333333 778888899999999999999988999884
No 113
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=84.41 E-value=0.67 Score=46.98 Aligned_cols=64 Identities=31% Similarity=0.390 Sum_probs=45.5
Q ss_pred HHHHhhhcCCEEEEeCCCCCCCcCCccccc--CCCCeEEEEcCCchhhccCCCCcceEeccHHHHHH
Q 048725 347 YANYAVDKSDLLLAFGVRFDDRVTGKLEAF--ASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALK 411 (661)
Q Consensus 347 ~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~--~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~ 411 (661)
.+.+.+++||++|++|+.+.-+....+-.. ..++++|.|+.++..+.. ...++.+.+|+.++++
T Consensus 209 ~a~~~~~~aDllLviGTSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~~~~-~~~d~~i~g~a~~vl~ 274 (290)
T 3u31_A 209 EAEEEIAKCDLLLVIGTSSTVSTATNLCHFACKKKKKIVEINISKTYITN-KMSDYHVCAKFSELTK 274 (290)
T ss_dssp HHHHHHHHCSEEEEESCCSCSHHHHHHHHHHHHTTCCEEEEESSCCTTTT-TTCSEEEESCGGGHHH
T ss_pred HHHHHHhcCCEEEEECcCCcchhHHHHHHHHHHcCCEEEEECCCCCCCCC-ccceEEEECCHHHHHH
Confidence 345567899999999999865443333222 356789999998876543 2367889999988775
No 114
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=83.96 E-value=1.2 Score=47.43 Aligned_cols=108 Identities=22% Similarity=0.081 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHh-----CCcEEEEEccchhhHHH---HHHHHHhhhCCCcEEEEecCCCCcccCC--CCC-CCCCHHHHh
Q 048725 138 GIFAAEGYARSS-----GKPGICIATSGPGATNL---VSGLADALLDSVPLVAITGQVPRRMIGT--DAF-QETPIVEVT 206 (661)
Q Consensus 138 A~~~A~Gyar~t-----g~~gv~~~tsGpG~~N~---l~gl~~A~~~~iPll~ItG~~p~~~~g~--~~~-q~~~~~~~~ 206 (661)
..-+|.|.+++. ++..+| ..|=|.++. .-++..|..-++|+|+|.-+........ ... ...|....+
T Consensus 186 ~lp~AvGaA~A~k~~~~~~~vv~--i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~~gi~~~~~~~~~~~~d~a~~a 263 (407)
T 1qs0_A 186 QFVQAVGWAMASAIKGDTKIASA--WIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRG 263 (407)
T ss_dssp HHHHHHHHHHHHHHTTCCCCEEE--EEETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEETTEEGGGGTTTTCCSTHHH
T ss_pred chhHHHHHHHHHHHhCCCCEEEE--EECCchhhcChHHHHHHHHHHHCcCEEEEEECCCcceeeccccccCCCCCHHHHH
Confidence 445677777764 444444 446665542 4567778888999888874332111000 001 112333344
Q ss_pred hcccccccccC--CcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 207 RSITKHNYLVL--DVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 207 ~~itk~~~~v~--~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
+.+--....|+ +++++...+++|+..++.+. ||+.|++-..
T Consensus 264 ~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t~ 306 (407)
T 1qs0_A 264 VGCGIASLRVDGNDFVAVYAASRWAAERARRGL-GPSLIEWVTY 306 (407)
T ss_dssp HHTTCEEEEEETTCHHHHHHHHHHHHHHHHTTS-CCEEEEEECC
T ss_pred HHcCCeEEEEcCCCHHHHHHHHHHHHHHHHhcC-CCEEEEEEee
Confidence 44332333444 56678888888888887765 8999998654
No 115
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=83.34 E-value=1.1 Score=47.44 Aligned_cols=105 Identities=15% Similarity=0.120 Sum_probs=59.9
Q ss_pred chHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCc
Q 048725 506 FGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRE 585 (661)
Q Consensus 506 ~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~ 585 (661)
.++++|+|++++. .|.++...|.|-.+| ...|.++...++|+++++.+..+.+.-...+. . + ++
T Consensus 75 ~a~~~a~Gaa~aG-~r~~~~ts~~G~~~~-~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~~~----~---~---sd---- 138 (395)
T 1yd7_A 75 ASIAAAIGASWAG-AKAMTATSGPGFSLM-QENIGYAVMTETPVVIVDVQRSGPSTGQPTLP----A---Q---GD---- 138 (395)
T ss_dssp HHHHHHHHHHHTT-CCEEEEEETTHHHHH-TTTCC----CCCCEEEEEEC------------------------------
T ss_pred HHHHHHHHHHHhC-CcEEEEeCchHHHHH-HHHHHHHHhcCCCEEEEEeeCCCCCCCCCccc----c---h---hH----
Confidence 3788999999875 567777778876554 44466677889999999998765541100000 0 0 00
Q ss_pred ccCCccHHHHHh--HcCCCEeeeCCHHHHHHHHHHHH----hCCCcEEEEE
Q 048725 586 SEIFPNMLKFAE--ACGIPGAQVTRKADLRAAIQTML----DTPGPYLLDV 630 (661)
Q Consensus 586 ~~~~~d~~~~A~--a~G~~~~~v~~~~el~~al~~a~----~~~gp~lIeV 630 (661)
.-...++. .+|+......+++|..+.+.+|+ +.+.|+++..
T Consensus 139 ----~~~~~~~~~g~~g~~vl~p~~~qea~~l~~~A~~lA~~~~~PVi~~~ 185 (395)
T 1yd7_A 139 ----IMQAIWGTHGDHSLIVLSPSTVQEAFDFTIRAFNLSEKYRTPVILLT 185 (395)
T ss_dssp --------------CCCCEEECCCSHHHHHHHHHHHHHHHHHHTSEEEEEE
T ss_pred ----HHHHHhccCCCcceEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEc
Confidence 00011122 34778888899999988888887 4568988764
No 116
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=83.19 E-value=2.9 Score=46.49 Aligned_cols=123 Identities=16% Similarity=0.165 Sum_probs=76.6
Q ss_pred CeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCc-ccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhc
Q 048725 493 RQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDG-SFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYK 571 (661)
Q Consensus 493 ~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~ 571 (661)
.+++....- ..+.-+|.|.+.+. + +.+|++-=| +..-.++.+.+|...++|+++|.-+...... .. +
T Consensus 64 i~~i~~~~E---~~A~~~A~GyAr~t-G-~~v~~~tsGpG~~N~~~gi~~A~~~~vPlv~itg~~~~~~~-----~~--~ 131 (570)
T 2vbf_A 64 MKWIGNANE---LNASYMADGYARTK-K-AAAFLTTFGVGELSAINGLAGSYAENLPVVEIVGSPTSKVQ-----ND--G 131 (570)
T ss_dssp CEEEECSSH---HHHHHHHHHHHHHH-S-CEEEEEETTHHHHHHHHHHHHHHHTTCCEEEEEEECCHHHH-----HH--T
T ss_pred CeEECcCcH---HHHHHHHHHHHHHh-C-CeEEEEcCCCCHHHHHHHHHHHhhhCCCEEEEeCCCCHHHh-----hc--c
Confidence 556554433 22566788877665 3 555555433 4444588999999999999999988764211 11 1
Q ss_pred ccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHH----hCCCcEEEEEEeCC
Q 048725 572 ANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTML----DTPGPYLLDVIFPH 634 (661)
Q Consensus 572 ~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~----~~~gp~lIeV~~~~ 634 (661)
.. .+...++.. +.|...+.+.+-.+..++.+ +++...+++++ ...||+.|++..|-
T Consensus 132 ~~-~~~~~~~~~-----~~~~~~~~~~~tk~~~~v~~-~~~~~~l~~A~~~A~~~~GPV~l~iP~d~ 191 (570)
T 2vbf_A 132 KF-VHHTLADGD-----FKHFMKMHEPVTAARTLLTA-ENATYEIDRVLSQLLKERKPVYINLPVDV 191 (570)
T ss_dssp CC-CTTSCSSSC-----CCHHHHHTGGGCSEEEECCT-TTHHHHHHHHHHHHHHHCCCEEEEEEHHH
T ss_pred cc-ceeeccccc-----hHHHHHHhhhhEEEEEEECc-ccHHHHHHHHHHHHhhCCCCEEEEcchhh
Confidence 10 111111100 12567888888888888887 77666555544 45699999998874
No 117
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=83.03 E-value=1.7 Score=45.51 Aligned_cols=107 Identities=25% Similarity=0.292 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHh---CCcEEEEEccchhhHHH---HHHHHHhhhCCCcEEEEecCCCCcccCCC---CCCCCCHHHHhhc
Q 048725 138 GIFAAEGYARSS---GKPGICIATSGPGATNL---VSGLADALLDSVPLVAITGQVPRRMIGTD---AFQETPIVEVTRS 208 (661)
Q Consensus 138 A~~~A~Gyar~t---g~~gv~~~tsGpG~~N~---l~gl~~A~~~~iPll~ItG~~p~~~~g~~---~~q~~~~~~~~~~ 208 (661)
..-+|.|.+++. |.-.++++..|=|+++. .-++..|...+.|+|+|.-+.. ..+.+. .....+... +.
T Consensus 145 ~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn~A~~~~lpvi~vv~NN~-~g~~t~~~~~~~~~~~~~--ra 221 (365)
T 2ozl_A 145 QVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNR-YGMGTSVERAAASTDYYK--RG 221 (365)
T ss_dssp HHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECS-EETTEEHHHHCSCCCGGG--TT
T ss_pred hhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHHHHHHHHCcCEEEEEECCC-cccCCCcccccCCCCHHH--Hh
Confidence 445677777664 22233344456666653 3467788888999999984331 111110 000111111 11
Q ss_pred ccccccccC--CcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 209 ITKHNYLVL--DVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 209 itk~~~~v~--~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
+--...+|+ +++++...+++|+..+..+. ||+.|++-..
T Consensus 222 ~g~p~~~VdG~D~~av~~a~~~A~~~~r~~~-gP~lIe~~t~ 262 (365)
T 2ozl_A 222 DFIPGLRVDGMDILCVREATRFAAAYCRSGK-GPILMELQTY 262 (365)
T ss_dssp TTSCEEEEETTCHHHHHHHHHHHHHHHHTTC-CCEEEEEECC
T ss_pred CCCCEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCEEEEEEee
Confidence 111112344 67788888888888887775 9999998654
No 118
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Probab=82.79 E-value=1.9 Score=44.08 Aligned_cols=109 Identities=17% Similarity=0.195 Sum_probs=71.2
Q ss_pred cEEEEcC-Ccc--chHHHHHHHHHHhCCCeeecCC--CCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCC
Q 048725 293 PVLYVGG-GCL--NSSEELRKFVELTGIPVASTLM--GLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDD 367 (661)
Q Consensus 293 PvIv~G~-g~~--~a~~~l~~lae~lg~PV~tt~~--gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~ 367 (661)
.+|+.|+ |.. ...+.+.+||++||.-|-+|-. -.|.+|. .+..|..| . .=.++|-|++|.+=.-
T Consensus 193 ~ivVsgGRG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~--~~QVGqTG---k------~V~P~lYiA~GISGAi 261 (307)
T 1efp_A 193 RRVVSGGRGLGSKESFAIIEELADKLGAAVGASRAAVDSGYAPN--DWQVGQTG---K------VVAPELYVAVGISGAI 261 (307)
T ss_dssp SEEEEECGGGCSSSTTHHHHHHHHHHTCEEEECHHHHHTTSSCG--GGBBSSSS---B------CCCCSEEEEESCCCCH
T ss_pred CEEEEcCCcCCCHHHHHHHHHHHHHhCCceeecHHHHhCCCCCh--hhEeccCC---c------ccCCceEEEEeccCcH
Confidence 3566655 443 2457899999999999977622 2466654 44444443 2 2368999999966211
Q ss_pred CcCCcccccCCCCeEEEEcCCchhhccCCCCcceEeccHHHHHHHHHHH
Q 048725 368 RVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRI 416 (661)
Q Consensus 368 ~~t~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~ 416 (661)
... .-......+|-|+-|++.- -+...|+.|++|+.+++.+|.+.
T Consensus 262 QHl---aGm~~s~~IVAIN~D~~Ap-IF~~ADygiVgDl~~v~P~L~~~ 306 (307)
T 1efp_A 262 QHL---AGMKDSKVIVAINKDEEAP-IFQIADYGLVGDLFSVVPELTGK 306 (307)
T ss_dssp HHH---TTTTTCSEEEEEESCTTCG-GGGTCSEEEESCHHHHHHHHHHT
T ss_pred HHH---hhhccCCEEEEEeCCCCCC-cccccCeEEeeeHHHHHHHHHhh
Confidence 111 1122345688899888741 13467999999999999999874
No 119
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=81.81 E-value=3.2 Score=42.99 Aligned_cols=113 Identities=13% Similarity=0.069 Sum_probs=68.4
Q ss_pred CCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEE-ECCcccccChHHHHH-HH--------HcCCCeEEEEEeCCcchh
Q 048725 492 PRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDI-DGDGSFIMNVQELAT-IK--------VEKLPIKILLLNNQHLGM 561 (661)
Q Consensus 492 p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i-~GDGsf~~~~~eL~t-a~--------~~~lpv~ivV~NN~g~g~ 561 (661)
|.+++..+- +=-..+++|.|++++. -++++.+ .+|.. +.....|.. ++ ..++|+++++- ++..|-
T Consensus 61 p~r~~d~gI--aE~~~v~~a~G~A~~G-~rp~~~~~f~~F~-~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~-~G~~g~ 135 (341)
T 2ozl_B 61 DKRIIDTPI--SEMGFAGIAVGAAMAG-LRPICEFMTFNFS-MQAIDQVINSAAKTYYMSGGLQPVPIVFRGP-NGASAG 135 (341)
T ss_dssp TTTEEECCS--CHHHHHHHHHHHHHTT-CEEEEECSSGGGG-GGGHHHHHTTTTTHHHHTTSSCCCCCEEEEE-CSCCSS
T ss_pred CCcEEECch--hHHHHHHHHHHHHHCC-CEEEEEeccHHHH-HHHHHHHHHHHHHHHhhccccCCCCEEEEEc-CcCCCC
Confidence 566765421 0012578889988873 4555544 66665 344444543 22 27899998877 343221
Q ss_pred HHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEE
Q 048725 562 VMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDV 630 (661)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV 630 (661)
....| .+ ..| .-+..--|+..+...|+.|+..+++.+++.++|++|-.
T Consensus 136 ----------~G~tH--s~--------~~e-a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i~~ 183 (341)
T 2ozl_B 136 ----------VAAQH--SQ--------CFA-AWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLE 183 (341)
T ss_dssp ----------CCGGG--CC--------CCH-HHHHTSTTCEEECCCSHHHHHHHHHHHHHSSSCEEEEE
T ss_pred ----------CCcch--hh--------HHH-HHhccCCCCEEEEeCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 00011 01 134 33333337788888999999999999999899998754
No 120
>3c2q_A Uncharacterized conserved protein; putative LOR/SDH, structural genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis S2}
Probab=81.21 E-value=2.1 Score=43.21 Aligned_cols=103 Identities=18% Similarity=0.204 Sum_probs=67.7
Q ss_pred HHHHHHhCCCeeec--CCCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEc
Q 048725 309 RKFVELTGIPVAST--LMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHID 386 (661)
Q Consensus 309 ~~lae~lg~PV~tt--~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id 386 (661)
..-+-+.++|++-. ..-.|-+|+-+.-.. ..+..-.+.++++|+||.+.+-+-...+++. .+...+++.||
T Consensus 231 my~cvk~~VPfVLAGSIRDDGPLPdvitdv~-----~AQ~~mr~~~~~a~~vimlaTmLHSIAtGNm--~Ps~v~~~cVD 303 (345)
T 3c2q_A 231 MYQCIKNNIPYVLAGSIRDDGPIPDVITDSM-----VAQDKMRTTVMDKKMVIMLSTLLHSVATGNL--MPSYIKTVCVD 303 (345)
T ss_dssp HHHHHHTTCCEEEECCTTCSSCCTTCBCBHH-----HHHHHHHHHHTTCSEEEEESCHHHHHHHHTT--CCTTSEEEEEE
T ss_pred HHHHHhCCCCEEEEeeccCCCCCCcccccHH-----HHHHHHHHHhccCCchHHHHHHHHHHHhccc--CcccceEEEEE
Confidence 34455667777543 233444444332110 1123334578899999999988865555543 34567899999
Q ss_pred CCchhhcc----CCCCcceEeccHHHHHHHHHHHhc
Q 048725 387 IDSAEIGK----NKQPHVSVCADLKLALKGINRILG 418 (661)
Q Consensus 387 ~d~~~i~~----~~~~~~~i~~D~~~~L~~L~~~l~ 418 (661)
+++....| -.-..++++.|+..||..|.+.|.
T Consensus 304 Inp~~VtKL~DRGs~qa~giVTdvg~Fl~~L~~~L~ 339 (345)
T 3c2q_A 304 IQPSTVTKLMDRGTSQAIGVVTDVGVFLVLLLKELE 339 (345)
T ss_dssp SCHHHHHHHHHTCCSSEEEEESCHHHHHHHHHHHHH
T ss_pred CCHHHhhhhhccCceeEEEEEecHHHHHHHHHHHHH
Confidence 99987664 334458899999999999987664
No 121
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=78.52 E-value=4.1 Score=42.01 Aligned_cols=113 Identities=12% Similarity=0.140 Sum_probs=68.3
Q ss_pred CCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEE-ECCcccccChHHHHH-HH--H------cCCCeEEEEEeCCcchh
Q 048725 492 PRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDI-DGDGSFIMNVQELAT-IK--V------EKLPIKILLLNNQHLGM 561 (661)
Q Consensus 492 p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i-~GDGsf~~~~~eL~t-a~--~------~~lpv~ivV~NN~g~g~ 561 (661)
|.+++..+- +=-..+++|.|++++. -++++.+ .+|+. +.....|.+ ++ + .++|+++++-+ ++ +.
T Consensus 51 p~r~~~~gi--sE~~~~~~a~G~A~~G-~rp~~~~t~~~F~-~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-~g-~~ 124 (338)
T 1qs0_B 51 KSRVFDAPI--SESGIVGTAVGMGAYG-LRPVVEIQFADYF-YPASDQIVSEMARLRYRSAGEFIAPLTLRMPC-GG-GI 124 (338)
T ss_dssp TTTEEECCS--CHHHHHHHHHHHHHHT-CEEEEECSCGGGC-GGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEE-CC-SS
T ss_pred CCcEEEccc--cHHHHHHHHHHHHhCC-CEEEEEeccHhHH-HHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeC-CC-CC
Confidence 556665321 0012678888888873 3444434 67765 344444432 22 2 35999988754 33 10
Q ss_pred HHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEE
Q 048725 562 VMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDV 630 (661)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV 630 (661)
. |..+.. .-|..-+..--|+......|+.|+...++.+++.++|++|--
T Consensus 125 ---------~--------G~th~s---~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~A~~~~~Pv~i~~ 173 (338)
T 1qs0_B 125 ---------Y--------GGQTHS---QSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVIFLE 173 (338)
T ss_dssp ---------S--------CCSSSS---CCCHHHHTTSTTCEEECCCSHHHHHHHHHHHHHSSSCEEEEE
T ss_pred ---------C--------Cccccc---ccHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 1 111110 125555554448888899999999999999999899998843
No 122
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=74.86 E-value=6.5 Score=41.59 Aligned_cols=107 Identities=21% Similarity=0.181 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHh-----CCcEEEEEccchhhHH---HHHHHHHhhhCCCcEEEEecCCCCcccCC--CCCCCCCHHHHhh
Q 048725 138 GIFAAEGYARSS-----GKPGICIATSGPGATN---LVSGLADALLDSVPLVAITGQVPRRMIGT--DAFQETPIVEVTR 207 (661)
Q Consensus 138 A~~~A~Gyar~t-----g~~gv~~~tsGpG~~N---~l~gl~~A~~~~iPll~ItG~~p~~~~g~--~~~q~~~~~~~~~ 207 (661)
..-+|.|.|++. ++..+|+ .|=|.++ ..-++..|..-++|+|+|.-+......+. ..+...+....++
T Consensus 167 ~lp~AvG~AlA~~~~~~~~~vv~~--~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~ 244 (400)
T 2bfd_A 167 QIPQAVGAAYAAKRANANRVVICY--FGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGP 244 (400)
T ss_dssp HHHHHHHHHHHHHHHTCCCCEEEE--EETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTG
T ss_pred cccHHHHHHHhhhhhCCCCeEEEE--ECchhhhcChHHHHHHHHHHHCcCEEEEEECCceeeeecccccCCCCCHHHHHH
Confidence 445677777654 3445554 4555443 23567777788899999985442111110 1111223334444
Q ss_pred cccccccccC--CcCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 048725 208 SITKHNYLVL--DVDDIPRIVREAFLLATSGRPGPVLIDVPK 247 (661)
Q Consensus 208 ~itk~~~~v~--~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~ 247 (661)
.+--....|+ +++++...+++|+..++.+. ||+.|++-.
T Consensus 245 a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~-~P~lIe~~t 285 (400)
T 2bfd_A 245 GYGIMSIRVDGNDVFAVYNATKEARRRAVAEN-QPFLIEAMT 285 (400)
T ss_dssp GGTCEEEEEETTCHHHHHHHHHHHHHHHHHHT-CCEEEEEEC
T ss_pred HcCCcEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCEEEEEEe
Confidence 4322223343 56678888888888776654 899999865
No 123
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=74.30 E-value=8.1 Score=40.33 Aligned_cols=107 Identities=29% Similarity=0.349 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHh-----CCcEEEEEccchhhHHH---HHHHHHhhhCCCcEEEEecCCCCcccCCC---CCCCCCHHHHh
Q 048725 138 GIFAAEGYARSS-----GKPGICIATSGPGATNL---VSGLADALLDSVPLVAITGQVPRRMIGTD---AFQETPIVEVT 206 (661)
Q Consensus 138 A~~~A~Gyar~t-----g~~gv~~~tsGpG~~N~---l~gl~~A~~~~iPll~ItG~~p~~~~g~~---~~q~~~~~~~~ 206 (661)
..-.|.|.|++. ++..+|+ .|=|.++. .-++..|...++|+|+|.-+.... +.+. .....|...++
T Consensus 149 ~l~~a~G~A~a~k~~~~~~~vv~i--~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~g-i~~~~~~~~~~~d~~~~a 225 (367)
T 1umd_A 149 HVPPAAGAAISMKLLRTGQVAVCT--FGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYA-ISVDYRHQTHSPTIADKA 225 (367)
T ss_dssp THHHHHHHHHHHHHTTCCCCEEEE--EETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEE-TTEEHHHHCSSSCSGGGG
T ss_pred hhhHHHHHHHHHHHhCCCCeEEEE--EcccccccCcHHHHHHHHHHhCcCEEEEEecCCee-eccChhhccCCCCHHHHH
Confidence 344455555442 3444444 45555532 224777888999988888544311 1110 01122333444
Q ss_pred hcccccccccC--CcCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 048725 207 RSITKHNYLVL--DVDDIPRIVREAFLLATSGRPGPVLIDVPKD 248 (661)
Q Consensus 207 ~~itk~~~~v~--~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~d 248 (661)
+.+--....|. ++..+..++++|++.+..+. ||+.|++-..
T Consensus 226 ~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~-gP~lIe~~t~ 268 (367)
T 1umd_A 226 HAFGIPGYLVDGMDVLASYYVVKEAVERARRGE-GPSLVELRVY 268 (367)
T ss_dssp GGTTSCEEEEETTCHHHHHHHHHHHHHHHHTTC-CCEEEEEECC
T ss_pred HHcCCcEEEeCCCCHHHHHHHHHHHHHHHHhcC-CCEEEEEEee
Confidence 44322223343 34456777788888887664 8999998643
No 124
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=74.29 E-value=6.3 Score=45.63 Aligned_cols=79 Identities=10% Similarity=0.019 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHhCC--CcEEEEcCCcc-chHHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCCcHHHHHh
Q 048725 275 PSEVHLEQIVRLISESK--KPVLYVGGGCL-NSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYA 351 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~Ak--rPvIv~G~g~~-~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g~~~a~~~ 351 (661)
..+++++.+++.|++.+ ...++.|.... .....+.+|++.+|.+.+.......... . +..+... .-
T Consensus 321 SWdeAl~~ia~~L~~i~~~~i~~~~s~~~t~E~~~~~~kl~~~lGt~n~d~~~~~~~~~------~---~~~~~~~--~d 389 (783)
T 3i9v_3 321 TWEEAFLALKEGLKEARGEEVGLYLAHDATLEEGLLASELAKALKTPHLDFQGRTAAPA------S---LFPPASL--ED 389 (783)
T ss_dssp CHHHHHHHHHHHHHTCCTTSEEEEECTTCCTTHHHHHHHHHHHTTCSCEEETTCCSSCG------G---GSCBCCH--HH
T ss_pred CHHHHHHHHHHHHHhhccCCEEEEECCCCCHHHHHHHHHHHHHhCCCcccCCchhhhhh------c---cCCCCCH--HH
Confidence 45788889999998765 34555555443 3456789999999987765432111100 0 1111111 23
Q ss_pred hhcCCEEEEeCCCC
Q 048725 352 VDKSDLLLAFGVRF 365 (661)
Q Consensus 352 l~~aDlvL~vG~~~ 365 (661)
++++|+||++| .+
T Consensus 390 i~~ad~Il~~G-Np 402 (783)
T 3i9v_3 390 LLQADFALVLG-DP 402 (783)
T ss_dssp HHHCSCEEEES-CH
T ss_pred HhhCCEEEEeC-Ch
Confidence 67999999999 75
No 125
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*
Probab=73.26 E-value=5 Score=45.91 Aligned_cols=119 Identities=20% Similarity=0.208 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHhCC-----CcEEEEcC-Ccc-c-hHHHHHHHHH-HhCCCeeecCCCCCCCCCCCCCCCcccCCCCc
Q 048725 275 PSEVHLEQIVRLISESK-----KPVLYVGG-GCL-N-SSEELRKFVE-LTGIPVASTLMGLGSFPGTDELSLQMLGMHGT 345 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~Ak-----rPvIv~G~-g~~-~-a~~~l~~lae-~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g~ 345 (661)
..+++++.+++.|++.+ .-+.+.++ +.. . ....+.+|++ .+|.+-+.+.......+... -..-++|....
T Consensus 79 sWdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~e~~~~~~~~~~~~~Gs~n~~~~~~~c~~~~~~-~~~~~~G~~~~ 157 (715)
T 2iv2_X 79 SWDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVMQKFARAVIGTNNVDCCARVXHGPSVA-GLHQSVGNGAM 157 (715)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCGGGEEEECCSSTTCHHHHHHHHHHHHHTTCCCCEECSSCCSCCSSSC-SHHHHHSCCSC
T ss_pred eHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCcCcHHHHHHHHHHHHhcCCCcCCCCCccchhHHHH-HHHhhcCCCCC
Confidence 45788888888887642 23545543 433 2 3356789998 89987655422221111100 00001221100
Q ss_pred HHHHHhhhcCCEEEEeCCCCCCCcCC---cc-cccCCCCeEEEEcCCchhhcc
Q 048725 346 VYANYAVDKSDLLLAFGVRFDDRVTG---KL-EAFASRAKIVHIDIDSAEIGK 394 (661)
Q Consensus 346 ~~a~~~l~~aDlvL~vG~~~~~~~t~---~~-~~~~~~~~vi~Id~d~~~i~~ 394 (661)
.....-++++|+||++|+.+.+.... .+ +......|+|.||+.......
T Consensus 158 ~~~~~di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~G~klividPr~t~ta~ 210 (715)
T 2iv2_X 158 SNAINEIDNTDLVFVFGYNPADSHPIVANHVINAKRNGAKIIVCDPRKIETAR 210 (715)
T ss_dssp SSCGGGGGGCSEEEEESCCHHHHCHHHHHHHHHHHHTTCEEEEECSSCCHHHH
T ss_pred CCCHhHHhcCCEEEEEcCChHHhCHHHHHHHHHHHHCCCeEEEEcCCCCchhH
Confidence 00112368999999999886432111 11 112246799999988765544
No 126
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=63.19 E-value=13 Score=38.19 Aligned_cols=112 Identities=13% Similarity=0.064 Sum_probs=65.3
Q ss_pred CCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEE-ECCcccccChHHHH-HHHH--------cCC-CeEEEEEeCCcch
Q 048725 492 PRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDI-DGDGSFIMNVQELA-TIKV--------EKL-PIKILLLNNQHLG 560 (661)
Q Consensus 492 p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i-~GDGsf~~~~~eL~-ta~~--------~~l-pv~ivV~NN~g~g 560 (661)
|.+++..+- +=-..+++|.|++++. -++++.+ .+|+.. .....|. .++. .+. |+++++-. ++.+
T Consensus 66 p~r~~~~gI--aE~~~v~~a~G~A~~G-~rp~~~~tf~~F~~-~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~-~g~~ 140 (342)
T 2bfd_B 66 KDRVFNTPL--CEQGIVGFGIGIAVTG-ATAIAEIQFADYIF-PAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPW-GCVG 140 (342)
T ss_dssp TTTEEECCS--CHHHHHHHHHHHHHTT-CCEEEECSSGGGCG-GGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEE-SCCS
T ss_pred CCeEEEcCc--CHHHHHHHHHHHHHCC-CeeEEEecchhHHH-HHHHHHHHHHHHHHhhhcCCccCCCEEEEEec-CCCC
Confidence 566665421 1112588899988873 4555544 677643 3333332 2222 244 88887553 2211
Q ss_pred hHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEE
Q 048725 561 MVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLD 629 (661)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIe 629 (661)
... .|. + .-|..-+..-=|+......++.|+...++++++.++|++|-
T Consensus 141 ----------~G~-th~--~--------~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i~ 188 (342)
T 2bfd_B 141 ----------HGA-LYH--S--------QSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFF 188 (342)
T ss_dssp ----------SCG-GGS--S--------CCCHHHHHTSTTCEEECCSSHHHHHHHHHHHHHSSSCEEEE
T ss_pred ----------CCc-chh--h--------HhHHHHHhcCCCcEEEeeCCHHHHHHHHHHHHhcCCcEEEE
Confidence 010 110 0 02555554433778888899999999999999989999884
No 127
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=62.30 E-value=15 Score=37.47 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=65.4
Q ss_pred CCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEE-ECCcccccChHHHHH-HHH--------cCCCeEEEEEeCCcchh
Q 048725 492 PRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDI-DGDGSFIMNVQELAT-IKV--------EKLPIKILLLNNQHLGM 561 (661)
Q Consensus 492 p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i-~GDGsf~~~~~eL~t-a~~--------~~lpv~ivV~NN~g~g~ 561 (661)
|.+++..+- +=-..+++|.|++++. -++++.+ .++.. +.....|.+ ++. .++|+++++- .+++.
T Consensus 50 p~r~~~~gI--aE~~~v~~a~G~A~~G-~~p~~~~t~~~F~-~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~--~g~~~ 123 (324)
T 1umd_B 50 PDRVMDTPL--SEAAIVGAALGMAAHG-LRPVAEIQFADYI-FPGFDQLVSQVAKLRYRSGGQFTAPLVVRMP--SGGGV 123 (324)
T ss_dssp TTTEEECCS--CHHHHHHHHHHHHHHT-CEEEEECSSGGGC-GGGHHHHHHTTTTHHHHTTTSSCCCCEEEEE--ECSSS
T ss_pred CCcEEECch--hHHHHHHHHHHHHHCC-CEEEEEeccHhHH-HHHHHHHHHHHHHHHhhcCCCCcCCEEEEEc--CCCCC
Confidence 566665421 0011578899988873 3555544 66664 333444433 232 6888888765 23321
Q ss_pred HHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHc-CCCEeeeCCHHHHHHHHHHHHhCCCcEEEE
Q 048725 562 VMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEAC-GIPGAQVTRKADLRAAIQTMLDTPGPYLLD 629 (661)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lIe 629 (661)
.....|. .-|. .+.+.+ |+......+..|+..+++++++.++|++|-
T Consensus 124 ---------~~g~~hs-----------~~~~-a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 171 (324)
T 1umd_B 124 ---------RGGHHHS-----------QSPE-AHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFL 171 (324)
T ss_dssp ---------SCGGGSS-----------CCCH-HHHHTSTTCEEEECCSHHHHHHHHHHHHHCSSCEEEE
T ss_pred ---------CCCCccc-----------hhHH-HHHhcCCCCEEEEeCCHHHHHHHHHHHHhcCCCEEEE
Confidence 0000010 0144 334443 777888899999999999999989999883
No 128
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=62.11 E-value=12 Score=38.22 Aligned_cols=111 Identities=12% Similarity=-0.019 Sum_probs=64.7
Q ss_pred CCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEE-ECCcccccChHHHHH-HHH--------cCCCeEEEEEeCCcchh
Q 048725 492 PRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDI-DGDGSFIMNVQELAT-IKV--------EKLPIKILLLNNQHLGM 561 (661)
Q Consensus 492 p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i-~GDGsf~~~~~eL~t-a~~--------~~lpv~ivV~NN~g~g~ 561 (661)
|.+++..+- +=-..+++|.|++++. -++++.+ .+++. +.....|.+ ++. .++|+++++- .+++.
T Consensus 49 p~r~~~~gI--aE~~~v~~a~G~A~~G-~rp~~~~t~~~F~-~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~--~g~~~ 122 (324)
T 1w85_B 49 EDRVFDTPL--AESGIGGLAIGLALQG-FRPVPEIQFFGFV-YEVMDSICGQMARIRYRTGGRYHMPITIRSP--FGGGV 122 (324)
T ss_dssp TTTEEECCS--CHHHHHHHHHHHHHTT-CEEEEBCSSGGGG-GGTHHHHHTTGGGHHHHTTTSSCCCCEEEEE--ECSSS
T ss_pred CCcEEEcch--hHHHHHHHHHHHHhCC-CEEEEEecchhHH-HHHHHHHHHHHHHHhhhccCCCcCCEEEEEe--ccCCC
Confidence 566665421 1112688899988873 3444444 66664 334444432 332 6888887753 33321
Q ss_pred HHHHHHHhhcccccccccCCCCCcccCCccHHHHHhHc-CCCEeeeCCHHHHHHHHHHHHhCCCcEEEE
Q 048725 562 VMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEAC-GIPGAQVTRKADLRAAIQTMLDTPGPYLLD 629 (661)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lIe 629 (661)
. +.++.. .-|. .+-.++ |+......++.|+...++++++.++|++|-
T Consensus 123 ---------~--------~g~~hs---~~~~-a~~~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i~ 170 (324)
T 1w85_B 123 ---------H--------TPELHS---DSLE-GLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFL 170 (324)
T ss_dssp ---------C--------CCTTSS---CCCH-HHHTTSTTCEEECCSSHHHHHHHHHHHHHSSSCEEEE
T ss_pred ---------C--------CCCccc---ccHH-HHHccCCCCEEEeeCCHHHHHHHHHHHHHcCCCEEEE
Confidence 0 011110 0133 333333 667778899999999999999989999884
No 129
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=47.19 E-value=1.8e+02 Score=27.76 Aligned_cols=89 Identities=12% Similarity=0.031 Sum_probs=56.8
Q ss_pred CcHHHHHHHHHHH--CCCCEEEeccCCC--------cHHHHHHHHcCCCCeEEcc------CCh-hHHHHHHHHHHHHhC
Q 048725 88 RKGADILVEALER--QGVTDVFAYPGGA--------SMEIHQALTRSNNIRNVLP------RHE-QGGIFAAEGYARSSG 150 (661)
Q Consensus 88 ~~gad~lv~~L~~--~GV~~vFg~PG~~--------~~~l~~aL~~~~~i~~v~~------~hE-~~A~~~A~Gyar~tg 150 (661)
..++..+++.|.+ .|-++|..+-|.. ...+.+++.++++++.+.. ... ..+--++.-+-+...
T Consensus 108 ~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (291)
T 3l49_A 108 YSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYP 187 (291)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHhCC
Confidence 4578889999999 9999887776643 3345677777655664321 112 223333333333344
Q ss_pred ---CcEEEEEccchhhHHHHHHHHHhhhC
Q 048725 151 ---KPGICIATSGPGATNLVSGLADALLD 176 (661)
Q Consensus 151 ---~~gv~~~tsGpG~~N~l~gl~~A~~~ 176 (661)
++-++++.+...+..++.++.++-..
T Consensus 188 ~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 216 (291)
T 3l49_A 188 NEGDVGAIWACWDVPMIGATQALQAAGRT 216 (291)
T ss_dssp STTSCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CcCCcCEEEECCCchHHHHHHHHHHcCCC
Confidence 68888888887777777777776554
No 130
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=47.00 E-value=72 Score=29.73 Aligned_cols=103 Identities=16% Similarity=0.152 Sum_probs=67.8
Q ss_pred ccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCC
Q 048725 504 MGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPS 583 (661)
Q Consensus 504 mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~ 583 (661)
-|+-+=-|+--+.... .-|+++|=+.....+..+.... ++++.+..++|.. .+....++.. ........|.
T Consensus 79 s~~Dil~al~~a~~~~--~kIavvg~~~~~~~~~~~~~ll--~~~i~~~~~~~~~-e~~~~i~~l~--~~G~~vvVG~-- 149 (196)
T 2q5c_A 79 TRFDTMRAVYNAKRFG--NELALIAYKHSIVDKHEIEAML--GVKIKEFLFSSED-EITTLISKVK--TENIKIVVSG-- 149 (196)
T ss_dssp CHHHHHHHHHHHGGGC--SEEEEEEESSCSSCHHHHHHHH--TCEEEEEEECSGG-GHHHHHHHHH--HTTCCEEEEC--
T ss_pred CHhHHHHHHHHHHhhC--CcEEEEeCcchhhHHHHHHHHh--CCceEEEEeCCHH-HHHHHHHHHH--HCCCeEEECC--
Confidence 3555555555444433 3588999888888887777654 6788888888763 3322222221 1112223332
Q ss_pred CcccCCccHHHHHhHcCCCEeeeCC-HHHHHHHHHHHHh
Q 048725 584 RESEIFPNMLKFAEACGIPGAQVTR-KADLRAAIQTMLD 621 (661)
Q Consensus 584 ~~~~~~~d~~~~A~a~G~~~~~v~~-~~el~~al~~a~~ 621 (661)
.--..+|+-+|++++.+++ .+.++.||++|++
T Consensus 150 ------~~~~~~A~~~Gl~~vli~sg~eSI~~Ai~eA~~ 182 (196)
T 2q5c_A 150 ------KTVTDEAIKQGLYGETINSGEESLRRAIEEALN 182 (196)
T ss_dssp ------HHHHHHHHHTTCEEEECCCCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHH
Confidence 2457899999999999988 9999999999875
No 131
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=45.58 E-value=89 Score=36.36 Aligned_cols=120 Identities=12% Similarity=0.014 Sum_probs=72.8
Q ss_pred CeEEcc-CChhHHHHHHHHHHHHhCCcEE-EEEccchhhHHH---H----HHHHHhhhCCCcEEEEecCCCCcccCCCCC
Q 048725 127 IRNVLP-RHEQGGIFAAEGYARSSGKPGI-CIATSGPGATNL---V----SGLADALLDSVPLVAITGQVPRRMIGTDAF 197 (661)
Q Consensus 127 i~~v~~-~hE~~A~~~A~Gyar~tg~~gv-~~~tsGpG~~N~---l----~gl~~A~~~~iPll~ItG~~p~~~~g~~~~ 197 (661)
.+++.+ .-|++++.+|.|||...-++-+ +-.+.|.=+..+ + +....-|..+.||+++...-. .|.+..
T Consensus 584 ~Rv~ds~IsE~~~vG~a~G~A~~G~~~~~i~eaqf~dF~~~AQ~~~DQ~i~~~~~k~~~~~~vvi~~p~G~---~G~Gp~ 660 (868)
T 2yic_A 584 FLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH---EGQGPD 660 (868)
T ss_dssp EEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCC---SSSCTT
T ss_pred cEEEECCccHHHHHHHHHHHHccCCCCceEEEEehHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEecCCC---CCCChh
Confidence 455544 8999999999999988766654 345666433333 2 221112455889887764222 244433
Q ss_pred CC-CCHHHHh--hccccccc-ccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccchhhh
Q 048725 198 QE-TPIVEVT--RSITKHNY-LVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQ 252 (661)
Q Consensus 198 q~-~~~~~~~--~~itk~~~-~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~dv~~~ 252 (661)
+. ....+++ +.+-.+.+ .+.++.++..+++++++. .-++||++--|..+...
T Consensus 661 Hs~~~~E~~l~l~~~pnm~V~~Ps~p~~~~~lLr~a~~~---~~~~Pvii~~pk~llR~ 716 (868)
T 2yic_A 661 HTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRRHGKD---GIQRPLIVFTPKSMLRN 716 (868)
T ss_dssp SSCCCHHHHHHHCCTTSCEEECCCSHHHHHHHHHHHHHS---SCCCCEEEEECSGGGGC
T ss_pred hcCCcHHHHHhcCCCCCCEEEEeCCHHHHHHHHHHHHhc---CCCCcEEEEechHHhCC
Confidence 32 3355666 43333332 356778888888877652 22489999999887643
No 132
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=45.27 E-value=81 Score=29.34 Aligned_cols=101 Identities=18% Similarity=0.235 Sum_probs=59.2
Q ss_pred cHHHHHHHHHHHCCCCEEEeccCCCcHHHH--HHHHc-----CCCCeEEccCChhHH---HHHHHHH----H----HHhC
Q 048725 89 KGADILVEALERQGVTDVFAYPGGASMEIH--QALTR-----SNNIRNVLPRHEQGG---IFAAEGY----A----RSSG 150 (661)
Q Consensus 89 ~gad~lv~~L~~~GV~~vFg~PG~~~~~l~--~aL~~-----~~~i~~v~~~hE~~A---~~~A~Gy----a----r~tg 150 (661)
..++.|++.|++.|-=++||+-++...... ..|.. +.+++.+....+... ..-..|| + ..-+
T Consensus 34 ~a~~~i~~al~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~r~g~~~~~~~~d~~~~~a~~~d~~~~~~~~~~l~~~~~ 113 (201)
T 3trj_A 34 QAAKAMVSCLENGGKVLVCGNGSSGVIAQHFTSKLLNHFEMERPPLPAIALTGDVATITAVGNHYGFSQIFAKQVAALGN 113 (201)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHC-------CCCEEETTSCHHHHHHHHHHTCGGGTTHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhcCccCCCCCCCceEEccCChHHHHHhccCCCHHHHHHHHHHhhCC
Confidence 467888888888899999998776654332 23432 235666555423221 1111121 1 1112
Q ss_pred CcEEEEEccchh-hHHHHHHHHHhhhCCCcEEEEecCCCC
Q 048725 151 KPGICIATSGPG-ATNLVSGLADALLDSVPLVAITGQVPR 189 (661)
Q Consensus 151 ~~gv~~~tsGpG-~~N~l~gl~~A~~~~iPll~ItG~~p~ 189 (661)
+--++++-|..| ..+.+.++..|...+.++|.||+....
T Consensus 114 ~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~~s 153 (201)
T 3trj_A 114 EDDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSGG 153 (201)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETTCC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 223333444444 667788888899999999999986553
No 133
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*
Probab=44.51 E-value=34 Score=38.86 Aligned_cols=117 Identities=15% Similarity=0.106 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHHhCC-----CcEEEEcCC-ccc-hHHHHHHHHHH-hCCCeeecCCCCCCCCC--CCCCCCcccCCCC
Q 048725 275 PSEVHLEQIVRLISESK-----KPVLYVGGG-CLN-SSEELRKFVEL-TGIPVASTLMGLGSFPG--TDELSLQMLGMHG 344 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~Ak-----rPvIv~G~g-~~~-a~~~l~~lae~-lg~PV~tt~~gkg~~p~--~hpl~lg~~G~~g 344 (661)
..+++++.+++.|++.+ .-+.+.|++ ... ....+.+|++. +|.+.+.........+. .....+|.... .
T Consensus 80 sWdeAl~~ia~~l~~~~~~~G~~~i~~~~~~~~~~e~~~~~~~~~~~~~gs~n~~~~~~~c~~~~~~~~~~~~G~~~~-~ 158 (723)
T 2nap_A 80 SWDEALDLMASRFRSSIDMYGPNSVAWYGSGQCLTEESYVANKIFKGGFGTNNVDGNPRLCMASAVGGYVTSFGKDEP-M 158 (723)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTSCHHHHHHHHHHHHHTSCCCCEEEGGGGTTHHHHHHHHHHHSSCSC-S
T ss_pred cHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcccchhhHHHHHHHHHhcCCCceeCCCccccchHhHHHHhccCCCCC-C
Confidence 46788888888887642 234444443 332 23456789988 88775543210000000 00001111000 1
Q ss_pred cHHHHHhhhcCCEEEEeCCCCCCCcCC---ccc-ccCC--CCeEEEEcCCchhhcc
Q 048725 345 TVYANYAVDKSDLLLAFGVRFDDRVTG---KLE-AFAS--RAKIVHIDIDSAEIGK 394 (661)
Q Consensus 345 ~~~a~~~l~~aDlvL~vG~~~~~~~t~---~~~-~~~~--~~~vi~Id~d~~~i~~ 394 (661)
.. ..-++++|+||++|+.+.+.... .+. .... ..++|.||+.......
T Consensus 159 ~~--~~d~~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~~g~klividP~~t~ta~ 212 (723)
T 2nap_A 159 GT--YADIDQATCFFIIGSNTSEAHPVLFRRIARRKQVEPGVKIIVADPRRTNTSR 212 (723)
T ss_dssp SC--GGGGGTCSEEEEESCCHHHHSHHHHHHHHHHHHHCTTCEEEEECSBCCGGGG
T ss_pred CC--hhhHhHCCEEEEEcCChhHhCcHHHHHHHHHHhhCCCCEEEEEcCcCCchhh
Confidence 11 12368999999999886432211 111 1122 6899999987766554
No 134
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=44.23 E-value=29 Score=34.86 Aligned_cols=73 Identities=18% Similarity=0.190 Sum_probs=41.4
Q ss_pred CCCcEEEEECCcccccChHHHHHHHHcC-CC--eEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHH
Q 048725 519 PDAIIVDIDGDGSFIMNVQELATIKVEK-LP--IKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKF 595 (661)
Q Consensus 519 p~~~vv~i~GDGsf~~~~~eL~ta~~~~-lp--v~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~ 595 (661)
+.|.+|.+.|.|+ ++++|..+.+.+ +| +..||-|+. |...+
T Consensus 95 ~~ri~vl~Sg~g~---~l~~ll~~~~~g~l~~~i~~Visn~~---------------------------------~~~~~ 138 (292)
T 3lou_A 95 RPKVLIMVSKLEH---CLADLLFRWKMGELKMDIVGIVSNHP---------------------------------DFAPL 138 (292)
T ss_dssp CCEEEEEECSCCH---HHHHHHHHHHHTSSCCEEEEEEESSS---------------------------------TTHHH
T ss_pred CCEEEEEEcCCCc---CHHHHHHHHHcCCCCcEEEEEEeCcH---------------------------------HHHHH
Confidence 3455677778774 677777665543 44 555555553 23346
Q ss_pred HhHcCCCEeeeC----CHHHHHHHHHHHHhCCCcEE
Q 048725 596 AEACGIPGAQVT----RKADLRAAIQTMLDTPGPYL 627 (661)
Q Consensus 596 A~a~G~~~~~v~----~~~el~~al~~a~~~~gp~l 627 (661)
|+.+|++...+. +..+.++.+.+.++.-+|-+
T Consensus 139 A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dl 174 (292)
T 3lou_A 139 AAQHGLPFRHFPITADTKAQQEAQWLDVFETSGAEL 174 (292)
T ss_dssp HHHTTCCEEECCCCSSCHHHHHHHHHHHHHHHTCSE
T ss_pred HHHcCCCEEEeCCCcCCHHHHHHHHHHHHHHhCCCE
Confidence 777788777643 34444555555554434433
No 135
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=42.91 E-value=8.8 Score=45.61 Aligned_cols=117 Identities=12% Similarity=-0.015 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHhC------CCcEEEEcCCccc--hHHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCCcH
Q 048725 275 PSEVHLEQIVRLISES------KKPVLYVGGGCLN--SSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTV 346 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~A------krPvIv~G~g~~~--a~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g~~ 346 (661)
..+++++.+++.|++. ++..++.|.+... ....+.+|+..+|-+.+......+......+...|.... ...
T Consensus 162 SWdeAl~~IA~~l~~i~~~~Gp~~i~~~~~~~~~~~~~~~~~~rf~~~lG~~n~~~~~~~~~~~~a~~~~~G~~~~-~~~ 240 (976)
T 2ivf_A 162 SWDEAAGDIADSIIDSFEAQGSDGFILDAPHVHAGSIAWGAGFRMTYLMDGVSPDINVDIGDTYMGAFHTFGKMHM-GYS 240 (976)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGGEEECCCCSTTCHHHHHHHHHHHHHHTCBEECHHHHHTCCCHHHHHHHSCCCC-BCC
T ss_pred cHHHHHHHHHHHHHHHHHHhCCceEEEEecCCccchHHHHHHHHHHHHhCCcccCccccccchhhhhhheecCCCC-CCC
Confidence 4577888888877653 2334434444433 225678999999988655211111111111222221100 111
Q ss_pred HHHHhhhcCCEEEEeCCCCCCCcCCccc----ccCCCCeEEEEcCCchhhcc
Q 048725 347 YANYAVDKSDLLLAFGVRFDDRVTGKLE----AFASRAKIVHIDIDSAEIGK 394 (661)
Q Consensus 347 ~a~~~l~~aDlvL~vG~~~~~~~t~~~~----~~~~~~~vi~Id~d~~~i~~ 394 (661)
..-+.++|+||++|+...+.....+. ...+.+|+|.||+......+
T Consensus 241 --~~D~~nad~Il~~G~N~~~~~p~~~~~~~~ar~~GakvivVDPr~t~ta~ 290 (976)
T 2ivf_A 241 --ADNLLDAELIFMTCSNWSYTYPSSYHFLSEARYKGAEVVVIAPDFNPTTP 290 (976)
T ss_dssp --GGGGGGCSEEEEESCCHHHHCTTTHHHHHHHHHHTCEEEEECSSCCTTGG
T ss_pred --hhhHhhCcEEEEeCCChhHcccHHHHHHHHHHHcCCEEEEECCCCCcchh
Confidence 12378999999999886432222211 11246799999998766544
No 136
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=42.87 E-value=21 Score=32.29 Aligned_cols=69 Identities=20% Similarity=0.300 Sum_probs=42.1
Q ss_pred ccCCCCCCCcHHHHHHHHHHHCCCC----EEEeccCCCcHHHH-HHHHcCCCCeEE----------ccCChhHHHHHHHH
Q 048725 80 SRFAPDQPRKGADILVEALERQGVT----DVFAYPGGASMEIH-QALTRSNNIRNV----------LPRHEQGGIFAAEG 144 (661)
Q Consensus 80 ~~~~~~~~~~gad~lv~~L~~~GV~----~vFg~PG~~~~~l~-~aL~~~~~i~~v----------~~~hE~~A~~~A~G 144 (661)
+||...-.-.--+--.+.|+++|++ .++-+||...+|+. ..|.++....-| ..++|-.+...+.|
T Consensus 20 arfn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIalG~VIrG~T~Hfd~Va~~vs~g 99 (154)
T 1hqk_A 20 SRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKEDIDAVIAIGVLIRGATPHFDYIASEVSKG 99 (154)
T ss_dssp ECTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHTCTTCCEEEEEEEEECCSSTHHHHHHHHHHHH
T ss_pred eeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeeeecCCchHHHHHHHHHHHH
Confidence 5665531112233446889999997 79999999999997 445554322222 12256666666666
Q ss_pred HHHH
Q 048725 145 YARS 148 (661)
Q Consensus 145 yar~ 148 (661)
..++
T Consensus 100 l~~v 103 (154)
T 1hqk_A 100 LANL 103 (154)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
No 137
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=42.79 E-value=95 Score=37.23 Aligned_cols=119 Identities=12% Similarity=0.020 Sum_probs=72.8
Q ss_pred CeEEcc-CChhHHHHHHHHHHHHhCCcEEE-EEccchhhHHH---H----HHHHHhhhCCCcEEEEecCCCCcccCCCC-
Q 048725 127 IRNVLP-RHEQGGIFAAEGYARSSGKPGIC-IATSGPGATNL---V----SGLADALLDSVPLVAITGQVPRRMIGTDA- 196 (661)
Q Consensus 127 i~~v~~-~hE~~A~~~A~Gyar~tg~~gv~-~~tsGpG~~N~---l----~gl~~A~~~~iPll~ItG~~p~~~~g~~~- 196 (661)
.+++.+ .-|++++.+|.|||...-++-++ -.+.|.=+..+ + +....-|..+.||+++.-.-. .|.+.
T Consensus 829 ~rv~ds~IsE~~~vg~a~G~A~~G~~~~~i~Eaqf~dF~~~aQ~~~DQ~i~~~~~k~~~~~~vv~~lp~G~---~G~G~~ 905 (1113)
T 2xt6_A 829 FLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH---EGQGPD 905 (1113)
T ss_dssp EEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCC---SSSCTT
T ss_pred cEEEECCCCHHHHHHHHHHHHhcCCCCceEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCCEEEEeCCCC---CCCChh
Confidence 455544 79999999999999887666543 34566433333 2 221111456889888764221 24443
Q ss_pred CCCCCHHHHh--hccccccc-ccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccchhh
Q 048725 197 FQETPIVEVT--RSITKHNY-LVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQ 251 (661)
Q Consensus 197 ~q~~~~~~~~--~~itk~~~-~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~dv~~ 251 (661)
++.....+++ +.+-.+.+ .+.++.++..++++|++. .-++||++--|..+..
T Consensus 906 Hs~~~~E~~l~l~~~pnm~V~~Ps~~~~~~~lLr~a~~~---~~~~Pvii~~pk~L~R 960 (1113)
T 2xt6_A 906 HTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRRHGKD---GIQRPLIVFTPKSMLR 960 (1113)
T ss_dssp SSCCCHHHHHHHCCTTSCEEECCSSHHHHHHHHHHHHHS---SCCCCEEEEECSGGGS
T ss_pred hhcccHHHHHhcCCCCCcEEEecCCHHHHHHHHHHHHhc---cCCCCEEEEechHHhC
Confidence 3333355666 43333332 356778888888887752 2248999999988764
No 138
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=42.39 E-value=39 Score=31.28 Aligned_cols=46 Identities=22% Similarity=0.241 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCccc-hHHHHHHHHHHhCCCeee
Q 048725 276 SEVHLEQIVRLISESKKPVLYVGGGCLN-SSEELRKFVELTGIPVAS 321 (661)
Q Consensus 276 ~~~~l~~~~~~L~~AkrPvIv~G~g~~~-a~~~l~~lae~lg~PV~t 321 (661)
+.+.+++++++|.++++-|+++|.|... ....+.....++|.++..
T Consensus 30 ~~~~i~~~~~~i~~a~~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~ 76 (201)
T 3fxa_A 30 SEEALVKTVEKIAECTGKIVVAGCGTSGVAAKKLVHSFNCIERPAVF 76 (201)
T ss_dssp CHHHHHHHHHHHHHCSSCEEEECCTHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEecHHHHHHHHHHHHHHhcCCcEEE
Confidence 5788999999999997679999988753 345555555668988865
No 139
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Probab=42.01 E-value=46 Score=39.41 Aligned_cols=117 Identities=14% Similarity=0.151 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHhCC-----------------CcEEEEcCCcc-c-hHHHHHHHHHHhCCCeeecCCCCCCCCC--CC
Q 048725 275 PSEVHLEQIVRLISESK-----------------KPVLYVGGGCL-N-SSEELRKFVELTGIPVASTLMGLGSFPG--TD 333 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~Ak-----------------rPvIv~G~g~~-~-a~~~l~~lae~lg~PV~tt~~gkg~~p~--~h 333 (661)
..+++++.+++.|++.+ .-+.+.|++.. . ....+.+|++.+|.+-+.+......-+. .+
T Consensus 87 SWdeAl~~ia~~l~~i~~~~g~~~~~~G~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~Gs~n~~~~~~~c~~~~~~~~ 166 (977)
T 1h0h_A 87 SWDWMLDTIAERVAKTREATFVTKNAKGQVVNRCDGIASVGSAAMDNEECWIYQAWLRSLGLFYIEHQARIXHSATVAAL 166 (977)
T ss_dssp CHHHHHHHHHHHHHHHHHHHEEEECTTSCEEEEECSEEEECCTTSCHHHHHHHHHHHHHTTBCCEECTHHHHTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhcccccccccccccCceEEEEeCCCcccHHHHHHHHHHHHcCCCccccccccccchHHHHH
Confidence 46788888888887642 12455554332 2 2345688999999875432110000000 00
Q ss_pred CCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcc----cccCCCCeEEEEcCCchhhcc
Q 048725 334 ELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKL----EAFASRAKIVHIDIDSAEIGK 394 (661)
Q Consensus 334 pl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~----~~~~~~~~vi~Id~d~~~i~~ 394 (661)
...+|....... -.-++++|+||++|+.+.+.....+ +...+..|+|.||+.......
T Consensus 167 ~~~~G~~~~~~~---~~D~~~ad~il~~G~N~~~~~p~~~~~~~~a~~~G~klivIDPr~t~ta~ 228 (977)
T 1h0h_A 167 AESYGRGAMTNH---WIDLKNSDVILMMGSNPAENHPISFKWVMRAKDKGATLIHVDPRYTRTST 228 (977)
T ss_dssp HHHHSCCSCSSC---TGGGGGCSEEEEESCCHHHHSTTHHHHHHHHHHTTCEEEEECSSCCTTGG
T ss_pred HHHhCCCCCCCC---HHHHhhCCEEEEECCChHHhCcHHHHHHHHHHHCCCeEEEECCCCCchhH
Confidence 001111000011 1236789999999988643222111 112346799999987665443
No 140
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=41.13 E-value=84 Score=28.43 Aligned_cols=96 Identities=15% Similarity=0.213 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHCCCCEEEeccCCCcHHHHHHHH---------cCCCCeEEccCChhHHHH-----------HHHHHHHHh
Q 048725 90 GADILVEALERQGVTDVFAYPGGASMEIHQALT---------RSNNIRNVLPRHEQGGIF-----------AAEGYARSS 149 (661)
Q Consensus 90 gad~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~---------~~~~i~~v~~~hE~~A~~-----------~A~Gyar~t 149 (661)
.++.|++.|.+.+-=++||+-++.. +...+. ...+++.+....+.+-.. +..-+...-
T Consensus 31 ~~~~i~~~l~~~~~I~i~G~G~S~~--~a~~~~~~l~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (188)
T 1tk9_A 31 VGELLCECLKKGGKILICGNGGSAA--DAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQVEALG 108 (188)
T ss_dssp HHHHHHHHHHTTCCEEEEESTHHHH--HHHHHHHHHHSCSSSCCCCCCEEESSCCHHHHHHHHHHTCGGGHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCEEEEEeCcHhHH--HHHHHHHHHhhhhccCCCCCceEeccCCchhHhhhhcCCCHHHHHHHHHHHhC
Confidence 4566677777787667777766553 333332 112455544432332210 111122212
Q ss_pred CCcEEEEEccchh-hHHHHHHHHHhhhCCCcEEEEecCC
Q 048725 150 GKPGICIATSGPG-ATNLVSGLADALLDSVPLVAITGQV 187 (661)
Q Consensus 150 g~~gv~~~tsGpG-~~N~l~gl~~A~~~~iPll~ItG~~ 187 (661)
++--++++-|-.| ..+.+..+..|...+.++|.||+..
T Consensus 109 ~~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~ 147 (188)
T 1tk9_A 109 NEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKG 147 (188)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGG
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 2223333444434 5677788888999999999999854
No 141
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=39.56 E-value=65 Score=28.93 Aligned_cols=67 Identities=22% Similarity=0.219 Sum_probs=38.3
Q ss_pred cHHHHHHHHHHHCCCCEEEeccCC-------------CcHHHH----HHHHcCCCCeEEccCChhHHHHHHHHHHHHhCC
Q 048725 89 KGADILVEALERQGVTDVFAYPGG-------------ASMEIH----QALTRSNNIRNVLPRHEQGGIFAAEGYARSSGK 151 (661)
Q Consensus 89 ~gad~lv~~L~~~GV~~vFg~PG~-------------~~~~l~----~aL~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~ 151 (661)
.--+.+++.|++.| .||..+-. ....++ +.|.+++-+ +...........+=.|||.+.||
T Consensus 19 ~~~~~i~~~L~~~G--~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~v-vA~l~~~d~Gt~~EiG~A~algk 95 (152)
T 4fyk_A 19 ALYARIVSRLRRYG--KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVV-VAEVTQPSLGVGYELGRAVALGK 95 (152)
T ss_dssp HHHHHHHHHHTTTS--EECCCC-------------CCCHHHHHHHHHHHHHHCSEE-EEECSSCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcC--cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEE-EEeCCCCCCCHHHHHHHHHHcCC
Confidence 45588999999999 47543321 111122 224444422 22222445566667788888888
Q ss_pred cEEEEEc
Q 048725 152 PGICIAT 158 (661)
Q Consensus 152 ~gv~~~t 158 (661)
|.+|+..
T Consensus 96 PV~~l~~ 102 (152)
T 4fyk_A 96 PILCLFR 102 (152)
T ss_dssp CEEEEEC
T ss_pred eEEEEEe
Confidence 8888765
No 142
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=39.51 E-value=29 Score=34.79 Aligned_cols=36 Identities=8% Similarity=0.115 Sum_probs=22.2
Q ss_pred CCCcEEEEECCcccccChHHHHHHHHcC-CC--eEEEEEeCC
Q 048725 519 PDAIIVDIDGDGSFIMNVQELATIKVEK-LP--IKILLLNNQ 557 (661)
Q Consensus 519 p~~~vv~i~GDGsf~~~~~eL~ta~~~~-lp--v~ivV~NN~ 557 (661)
+.|.+|.+.|.| .++++|..+.+.+ +| +..||-|+.
T Consensus 90 ~~ri~vl~Sg~g---~~l~~ll~~~~~g~l~~~i~~Visn~~ 128 (286)
T 3n0v_A 90 RPKVVIMVSKAD---HCLNDLLYRQRIGQLGMDVVAVVSNHP 128 (286)
T ss_dssp CCEEEEEESSCC---HHHHHHHHHHHTTSSCCEEEEEEESSS
T ss_pred CcEEEEEEeCCC---CCHHHHHHHHHCCCCCcEEEEEEeCcH
Confidence 345567778877 4677877766543 44 555555553
No 143
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=39.06 E-value=30 Score=34.92 Aligned_cols=74 Identities=15% Similarity=0.182 Sum_probs=43.9
Q ss_pred CCCcEEEEECCcccccChHHHHHHHHcC-CC--eEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHH
Q 048725 519 PDAIIVDIDGDGSFIMNVQELATIKVEK-LP--IKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKF 595 (661)
Q Consensus 519 p~~~vv~i~GDGsf~~~~~eL~ta~~~~-lp--v~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~ 595 (661)
+.|.+|.+.|.|+ ++++|..+.+.+ ++ +..||-|+. |...+
T Consensus 105 ~~ri~vl~Sg~g~---nl~~ll~~~~~g~l~~~I~~Visn~~---------------------------------~~~~~ 148 (302)
T 3o1l_A 105 KKRVVLMASRESH---CLADLLHRWHSDELDCDIACVISNHQ---------------------------------DLRSM 148 (302)
T ss_dssp CCEEEEEECSCCH---HHHHHHHHHHTTCSCSEEEEEEESSS---------------------------------TTHHH
T ss_pred CcEEEEEEeCCch---hHHHHHHHHHCCCCCcEEEEEEECcH---------------------------------HHHHH
Confidence 3455677788775 678887766553 44 555555543 33456
Q ss_pred HhHcCCCEeeeC----CHHHHHHHHHHHHhCCCcEEE
Q 048725 596 AEACGIPGAQVT----RKADLRAAIQTMLDTPGPYLL 628 (661)
Q Consensus 596 A~a~G~~~~~v~----~~~el~~al~~a~~~~gp~lI 628 (661)
|+.+|++...+. +.++.++.+.+.++.-+|-+|
T Consensus 149 A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dli 185 (302)
T 3o1l_A 149 VEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVV 185 (302)
T ss_dssp HHTTTCCEEECCCCSSCCHHHHHHHHHHHHHTTCSEE
T ss_pred HHHcCCCEEEcCCCcCCHHHHHHHHHHHHHHhCCCEE
Confidence 778888877662 334455555555555555444
No 144
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=38.94 E-value=48 Score=26.82 Aligned_cols=45 Identities=11% Similarity=0.235 Sum_probs=36.7
Q ss_pred cHHHHHhHcCCCEeeeCCHHHHHHHHHHHHhCCCcEEEEEEeCCC
Q 048725 591 NMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQ 635 (661)
Q Consensus 591 d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~~~~~ 635 (661)
.|..+.+--|++...|.++.||++.+++....-...++-|.+|..
T Consensus 17 kfkdiikkngfkvrtvrspqelkdsieelvkkynativvvvvddk 61 (134)
T 2l69_A 17 KFKDIIKKNGFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDK 61 (134)
T ss_dssp HHHHHHHHTTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSH
T ss_pred HHHHHHHhcCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccH
Confidence 466677888999999999999999999988776677777777643
No 145
>1hi9_A Dciaa, dipeptide transport protein DPPA; hydrolase (protease), protease, D-aminopeptidase, decamer, SELF-compartmentalizing; 2.4A {Bacillus subtilis} SCOP: c.99.1.1
Probab=38.25 E-value=5.2 Score=39.83 Aligned_cols=155 Identities=15% Similarity=0.160 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHCCCCEEEeccCCCcH--HHHHHHHcCCCCeEEccCC----------hhHHHHHHHHHHHHhCCcEEEEE
Q 048725 90 GADILVEALERQGVTDVFAYPGGASM--EIHQALTRSNNIRNVLPRH----------EQGGIFAAEGYARSSGKPGICIA 157 (661)
Q Consensus 90 gad~lv~~L~~~GV~~vFg~PG~~~~--~l~~aL~~~~~i~~v~~~h----------E~~A~~~A~Gyar~tg~~gv~~~ 157 (661)
-..+.++.+.+.|.+.|.-.-....+ =+.+.|.. ..++|.-.. |.--+.+=.||.-..|..++. .
T Consensus 38 evnAai~ga~~~Ga~eV~V~DsHg~~~NLl~e~L~~--ra~li~G~prp~~Mm~Gld~sfD~v~fiGYHa~AG~~gvL-a 114 (274)
T 1hi9_A 38 EANYCIAEAFNSGCTEVLVNDSHSKMNNLMVEKLHP--EADLISGDVKPFSMVEGLDDTFRGALFLGYHARASTPGVM-S 114 (274)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECSTTSCCSCTTTSCT--TSEEEEESCCTTGGGTTCCTTCSEEEEEEECCCTTSSSTT-C
T ss_pred HHHHHHHHHHHCCCeEEEEEccCCCcCCcChhHCCc--CeEEEeCCCCCcchhccccCCccEEEEeecCCCCCCCCcc-C
Confidence 34567889999999999986544322 12333322 345544332 221111223433333334443 3
Q ss_pred cc-chhhHH-----------HHHHHHHhhhCCCcEEEEecCCCCcccCCCCCCCCCHHHHhhcccccccccCCcCcHHHH
Q 048725 158 TS-GPGATN-----------LVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRI 225 (661)
Q Consensus 158 ts-GpG~~N-----------~l~gl~~A~~~~iPll~ItG~~p~~~~g~~~~q~~~~~~~~~~itk~~~~v~~~~~i~~~ 225 (661)
|+ +-...+ .+++. -|-.-++||+++|||.-....-+..+.++....+-+.+..++....+|+...+.
T Consensus 115 HT~~~~~~~v~iNG~~~gE~~lna~-~Ag~~gVPV~lvsGDd~~~~e~~~~~P~~~tv~vK~~~gr~aa~~~~p~~a~~~ 193 (274)
T 1hi9_A 115 HSMIFGVRHFYINDRPVGELGLNAY-VAGYYDVPVLMVAGDDRAAKEAEELIPNVTTAAVKQTISRSAVKCLSPAKRGRL 193 (274)
T ss_dssp CSSSTTEEEEEETTEEECHHHHHHH-HHHHTTCCEEEEEEEHHHHHHHHTTSTTCEEEEEEEEEETTEEEECCHHHHHHH
T ss_pred CCCccceEEEEECCEEcCHHHHHHH-HHhhcCCCEEEEecCHHHHHHHHHhCCCCeEEEEeecccccccccCCHHHHHHH
Confidence 33 211111 13332 355679999999998753211111111111112222233444555677887777
Q ss_pred HHHHHHHhhcC--------CCceEEEEeccc
Q 048725 226 VREAFLLATSG--------RPGPVLIDVPKD 248 (661)
Q Consensus 226 i~~A~~~a~s~--------~~GPV~I~iP~d 248 (661)
|+++.+.|+.. .++|+.++|-+.
T Consensus 194 I~~aa~~Al~~~~~~~p~~~~~p~~l~v~f~ 224 (274)
T 1hi9_A 194 LTEKTAFALQNKDKVKPLTPPDRPVLSIEFA 224 (274)
T ss_dssp HHHHHHHHHHSGGGCCCCCCCSSCEEEEEES
T ss_pred HHHHHHHHHhhccCCCCcCCCCCEEEEEEEC
Confidence 88777777743 246666666543
No 146
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=38.18 E-value=24 Score=33.65 Aligned_cols=74 Identities=27% Similarity=0.381 Sum_probs=41.8
Q ss_pred CCcEEEEECCcccccChHHHHHHHHcC-CC--eEEEEEeCCc-chhHHHHHHHhhcccccccccCCCCCcccCCccHHHH
Q 048725 520 DAIIVDIDGDGSFIMNVQELATIKVEK-LP--IKILLLNNQH-LGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKF 595 (661)
Q Consensus 520 ~~~vv~i~GDGsf~~~~~eL~ta~~~~-lp--v~ivV~NN~g-~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~ 595 (661)
.|.+|.+.|.|+++ +.|..+.+.+ ++ +..||-|+.. ++ ...
T Consensus 8 ~ri~vl~SG~gsnl---~all~~~~~~~l~~~I~~Visn~~~a~~--------------------------------l~~ 52 (209)
T 4ds3_A 8 NRVVIFISGGGSNM---EALIRAAQAPGFPAEIVAVFSDKAEAGG--------------------------------LAK 52 (209)
T ss_dssp EEEEEEESSCCHHH---HHHHHHHTSTTCSEEEEEEEESCTTCTH--------------------------------HHH
T ss_pred ccEEEEEECCcHHH---HHHHHHHHcCCCCcEEEEEEECCcccHH--------------------------------HHH
Confidence 35678889999875 4444444443 44 5555655431 11 246
Q ss_pred HhHcCCCEeeeC-----CHHHHHHHHHHHHhCCCcEEE
Q 048725 596 AEACGIPGAQVT-----RKADLRAAIQTMLDTPGPYLL 628 (661)
Q Consensus 596 A~a~G~~~~~v~-----~~~el~~al~~a~~~~gp~lI 628 (661)
|+.+|++...++ +.+++++.+.+.++.-+|-+|
T Consensus 53 A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dli 90 (209)
T 4ds3_A 53 AEAAGIATQVFKRKDFASKEAHEDAILAALDVLKPDII 90 (209)
T ss_dssp HHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHHCCSEE
T ss_pred HHHcCCCEEEeCccccCCHHHHHHHHHHHHHhcCCCEE
Confidence 777787777653 344555555555554444433
No 147
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=38.04 E-value=80 Score=30.27 Aligned_cols=103 Identities=17% Similarity=0.146 Sum_probs=65.1
Q ss_pred ccchHHHHHHhhhhCCCCcEEEEECCcccccChHHHHHHHHcCCCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCC
Q 048725 504 MGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPS 583 (661)
Q Consensus 504 mG~~lpaAiGaala~p~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~ 583 (661)
-|+-+=-|+--+.... .-|+++|=+.....+..+... .++++.+..++|.. .+....++.. ........|.
T Consensus 91 s~~Dil~aL~~a~~~~--~kIavVg~~~~~~~~~~i~~l--l~~~i~~~~~~~~e-e~~~~i~~l~--~~G~~vVVG~-- 161 (225)
T 2pju_A 91 SGYDVLQFLAKAGKLT--SSIGVVTYQETIPALVAFQKT--FNLRLDQRSYITEE-DARGQINELK--ANGTEAVVGA-- 161 (225)
T ss_dssp CHHHHHHHHHHTTCTT--SCEEEEEESSCCHHHHHHHHH--HTCCEEEEEESSHH-HHHHHHHHHH--HTTCCEEEES--
T ss_pred CHHHHHHHHHHHHhhC--CcEEEEeCchhhhHHHHHHHH--hCCceEEEEeCCHH-HHHHHHHHHH--HCCCCEEECC--
Confidence 3555555554443332 347888877776666666554 47888888888753 2222222211 1112223332
Q ss_pred CcccCCccHHHHHhHcCCCEeeeCCHHHHHHHHHHHHh
Q 048725 584 RESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD 621 (661)
Q Consensus 584 ~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~ 621 (661)
.--..+|+-+|++++.+++.+.++.||++|++
T Consensus 162 ------~~~~~~A~~~Gl~~vlI~s~eSI~~Ai~eA~~ 193 (225)
T 2pju_A 162 ------GLITDLAEEAGMTGIFIYSAATVRQAFSDALD 193 (225)
T ss_dssp ------HHHHHHHHHTTSEEEESSCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHcCCcEEEECCHHHHHHHHHHHHH
Confidence 24578999999999999999999999999885
No 148
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=37.11 E-value=2e+02 Score=33.78 Aligned_cols=119 Identities=14% Similarity=0.138 Sum_probs=69.0
Q ss_pred CeEEcc-CChhHHHHHHHHHHHHhCCcEEE-EEccchhhHH---HHHHHH---Hh-hhCCCcEEEEecCCCCcccCCCC-
Q 048725 127 IRNVLP-RHEQGGIFAAEGYARSSGKPGIC-IATSGPGATN---LVSGLA---DA-LLDSVPLVAITGQVPRRMIGTDA- 196 (661)
Q Consensus 127 i~~v~~-~hE~~A~~~A~Gyar~tg~~gv~-~~tsGpG~~N---~l~gl~---~A-~~~~iPll~ItG~~p~~~~g~~~- 196 (661)
.+++.+ ..|++++.+|.|||...-+.-++ ..+.|.=+.. ++--+. +| |..+.||+++... . ..|.+.
T Consensus 652 ~rv~ds~IaE~~~vg~a~G~A~~G~~~lpv~e~qf~dF~~~AQra~DQii~~~~ak~~~~~~vv~~l~~-G--~~g~G~~ 728 (933)
T 2jgd_A 652 FRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPH-G--YEGQGPE 728 (933)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHCTTSEEEEEC-CGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEEC-C--CSSSCTT
T ss_pred CeEEECCcCHHHHHHHHHHHHhcCCCCCCEEEEEEhhhhcccHHHHHHHHHHHHHHHccCCCEEEEEeC-C--CCCCCcc
Confidence 566555 89999999999999987763222 2356643321 222222 33 3468898887643 2 223333
Q ss_pred CCCCCHHHHhhcc--ccccc-ccCCcCcHHHHHHHHHHHhhcCCCceEEEEeccchhh
Q 048725 197 FQETPIVEVTRSI--TKHNY-LVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQ 251 (661)
Q Consensus 197 ~q~~~~~~~~~~i--tk~~~-~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~iP~dv~~ 251 (661)
++..-..+++.-. -.+.+ .+.++.++..++++|+. ...++||+|.-|..+..
T Consensus 729 Hss~~~E~~l~~~~~pnm~V~~Pst~~e~~~lLr~a~~---~~~~~Pvii~~pk~l~r 783 (933)
T 2jgd_A 729 HSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQAL---RGMRRPLVVMSPKSLLR 783 (933)
T ss_dssp SSCCCHHHHHHTCCTTCCEEECCCSHHHHHHHHHHHHH---SSCCCCEEEEECSGGGG
T ss_pred cccchHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHH---hcCCCcEEEEecchhcc
Confidence 2332344555433 22222 34567777777777643 22248999999988754
No 149
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=36.76 E-value=65 Score=27.05 Aligned_cols=90 Identities=13% Similarity=0.158 Sum_probs=54.9
Q ss_pred EcCCccc---hHHHHHHHHHHhCCCeee-cCCCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCc
Q 048725 297 VGGGCLN---SSEELRKFVELTGIPVAS-TLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGK 372 (661)
Q Consensus 297 ~G~g~~~---a~~~l~~lae~lg~PV~t-t~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~ 372 (661)
++.|... +.+.|.+.|+++|+.+-. |....|+- ++| ..+.+++||+||.....-- ..
T Consensus 11 CptGiAhTymAAeaLekaA~~~G~~ikVEtqgs~g~~---n~L------------t~~~I~~AD~VIia~d~~v----~~ 71 (106)
T 2m1z_A 11 CATGVAHTYMAAQALKKGAKKMGNLIKVETQGATGIE---NEL------------TEKDVNIGEVVIFAVDTKV----RN 71 (106)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHTCEEEEEEEETTEES---SCC------------CHHHHHHCSEEEEEESSCC----ST
T ss_pred CCCcHHHHHHHHHHHHHHHHHCCCEEEEEEecCcccc---CCC------------CHHHHhhCCEEEEeccccc----cc
Confidence 3556542 568899999999999854 43333321 222 1245789999998864321 11
Q ss_pred ccccCCCCeEEEEcCCchhhccCCCCcceEeccHHHHHHHHHHHhc
Q 048725 373 LEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILG 418 (661)
Q Consensus 373 ~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 418 (661)
.+.|. +.+++++++... ..|...+|+...+.+.
T Consensus 72 ~~RF~-gk~v~~~~v~~~------------i~~~~~~l~~a~~~~~ 104 (106)
T 2m1z_A 72 KERFD-GKVVLEVPVSAP------------IKDAEKVINAALALID 104 (106)
T ss_dssp HHHHT-TSEEEEECTTHH------------HHCHHHHHHHHHHHHT
T ss_pred hhccC-CCcEEEEcHHHH------------HHCHHHHHHHHHHHHh
Confidence 23343 568888887653 2467777777666554
No 150
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=36.75 E-value=46 Score=31.72 Aligned_cols=74 Identities=26% Similarity=0.411 Sum_probs=42.1
Q ss_pred CcEEEEECCcccccChHHHHHHHHcCCC--eEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHhH
Q 048725 521 AIIVDIDGDGSFIMNVQELATIKVEKLP--IKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEA 598 (661)
Q Consensus 521 ~~vv~i~GDGsf~~~~~eL~ta~~~~lp--v~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~a 598 (661)
|.+|.+.|.|+.+ +.|..+.+.+++ +..||-|+..- --.+.|+.
T Consensus 7 riavl~SG~Gsnl---~all~~~~~~~~~eI~~Vis~~~~a-------------------------------~~~~~A~~ 52 (215)
T 3tqr_A 7 PIVVLISGNGTNL---QAIIGAIQKGLAIEIRAVISNRADA-------------------------------YGLKRAQQ 52 (215)
T ss_dssp EEEEEESSCCHHH---HHHHHHHHTTCSEEEEEEEESCTTC-------------------------------HHHHHHHH
T ss_pred EEEEEEeCCcHHH---HHHHHHHHcCCCCEEEEEEeCCcch-------------------------------HHHHHHHH
Confidence 4567777988765 555555554444 55555554321 01246777
Q ss_pred cCCCEeeeC-----CHHHHHHHHHHHHhCCCcEEE
Q 048725 599 CGIPGAQVT-----RKADLRAAIQTMLDTPGPYLL 628 (661)
Q Consensus 599 ~G~~~~~v~-----~~~el~~al~~a~~~~gp~lI 628 (661)
+|++...++ +.++..+.+.+.++.-+|-+|
T Consensus 53 ~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dli 87 (215)
T 3tqr_A 53 ADIPTHIIPHEEFPSRTDFESTLQKTIDHYDPKLI 87 (215)
T ss_dssp TTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEE
T ss_pred cCCCEEEeCccccCchhHhHHHHHHHHHhcCCCEE
Confidence 777777653 344555666666666566554
No 151
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=36.45 E-value=72 Score=28.84 Aligned_cols=74 Identities=18% Similarity=0.224 Sum_probs=45.0
Q ss_pred CCCCCCcHHHHHHHHHHHCCCCEEEeccCCCc----HHH----HHHHHcCCCCeEEc----cCChhHHHHHHHHHHHHhC
Q 048725 83 APDQPRKGADILVEALERQGVTDVFAYPGGAS----MEI----HQALTRSNNIRNVL----PRHEQGGIFAAEGYARSSG 150 (661)
Q Consensus 83 ~~~~~~~gad~lv~~L~~~GV~~vFg~PG~~~----~~l----~~aL~~~~~i~~v~----~~hE~~A~~~A~Gyar~tg 150 (661)
.+++-+...+.+.+.|+++|.+.++ |.... ..+ .+.|.+++-+=.+. -........+=.|||.+.|
T Consensus 21 ~~~e~~~~~~~l~~~l~~~G~~v~~--P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~Alg 98 (161)
T 2f62_A 21 NPDMGASYYNKVRELLKKENVMPLI--PTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALN 98 (161)
T ss_dssp STTTTHHHHHHHHHHHHTTTCEEEC--TTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEC--CCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCC
Confidence 3443157778999999999986433 76533 233 33455554221111 1245566667778888888
Q ss_pred CcEEEEEc
Q 048725 151 KPGICIAT 158 (661)
Q Consensus 151 ~~gv~~~t 158 (661)
||.+++.+
T Consensus 99 KPVi~l~~ 106 (161)
T 2f62_A 99 KMVLTFTS 106 (161)
T ss_dssp CEEEEECS
T ss_pred CEEEEEEc
Confidence 88887654
No 152
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Probab=35.57 E-value=76 Score=36.28 Aligned_cols=114 Identities=17% Similarity=0.185 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHHhC------CCcEEEEcCCccchHHHHHHHH-HHhCCCeeecCC-CCCCCC--CCCCCCCcccCCCC
Q 048725 275 PSEVHLEQIVRLISES------KKPVLYVGGGCLNSSEELRKFV-ELTGIPVASTLM-GLGSFP--GTDELSLQMLGMHG 344 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~A------krPvIv~G~g~~~a~~~l~~la-e~lg~PV~tt~~-gkg~~p--~~hpl~lg~~G~~g 344 (661)
..+++++.+++.|++. +...++.| +... ..+.+|+ ..+|-+-+.... ....-+ ......+|.. .+
T Consensus 116 sWdeAl~~ia~~l~~i~~~~G~~~i~~~~~-~~~e--~~~~~~~r~~~Gt~n~~~~~~~~c~~~~~~~~~~~~G~~--~~ 190 (765)
T 2vpz_A 116 TWEEALDHIAKKMLEIREKYGPEAIAFFGH-GTGD--YWFVDFLPAAWGSPNAAKPSVSLCTAPREVASQWVFGRP--IG 190 (765)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCGGGCEEEEC-STTH--HHHTTTHHHHHTCCCEECHHHHTTTHHHHHHHHHHSSSC--CC
T ss_pred eHHHHHHHHHHHHHHHHHhhCCcEEEEEcC-CCcH--HHHHHHHHHhcCCCccCCCcccccccHHHHHHHhhcCCC--CC
Confidence 4678888888887653 33455555 4222 5567899 889987654221 000000 0001111210 01
Q ss_pred cHHHHHhhhcCCEEEEeCCCCCCCcC-Cccc----ccCCCCeEEEEcCCchhhcc
Q 048725 345 TVYANYAVDKSDLLLAFGVRFDDRVT-GKLE----AFASRAKIVHIDIDSAEIGK 394 (661)
Q Consensus 345 ~~~a~~~l~~aDlvL~vG~~~~~~~t-~~~~----~~~~~~~vi~Id~d~~~i~~ 394 (661)
... ..-++++|+||++|+.+.+... ..+. ......|+|.||+.......
T Consensus 191 ~~~-~~d~~~ad~il~~G~n~~~~~p~~~~~~~~~a~~~G~klividPr~t~ta~ 244 (765)
T 2vpz_A 191 GHE-PIDWENARYIVLIGHHIGEDTHNTQLQDFALALKNGAKVVVVDPRFSTAAA 244 (765)
T ss_dssp SSC-CCCGGGCSEEEEESCCBTTBCCHHHHHHHHHHHHTTCEEEEECSBCCTTGG
T ss_pred CCC-ccccccCCEEEEEeCChhhcCChHHHHHHHHHHHCCCEEEEECCCCCcchh
Confidence 000 1236799999999998755433 2111 12246799999987765544
No 153
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=35.25 E-value=2.2e+02 Score=32.92 Aligned_cols=113 Identities=9% Similarity=0.006 Sum_probs=62.8
Q ss_pred eEEccCChhHHHHHHHHHHHHhCCcEEEEEccchhh---HHHHHH----HHHh-hh----CCC-cEEEEecCCCCcccCC
Q 048725 128 RNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGA---TNLVSG----LADA-LL----DSV-PLVAITGQVPRRMIGT 194 (661)
Q Consensus 128 ~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG~---~N~l~g----l~~A-~~----~~i-Pll~ItG~~p~~~~g~ 194 (661)
|++....|++.+.+|.||+.. |+.+.+ .+.++=+ .-+.+. |-.+ .. -.+ ++.+|.....- ..|.
T Consensus 492 R~i~GI~Eh~M~gia~Glal~-G~~~f~-~t~atFl~~~~~a~~q~akwiR~a~a~~~wr~~~~~v~~v~Th~si-~~Ge 568 (845)
T 3ahc_A 492 QVTEQLSEHQCEGFLEAYLLT-GRHGIW-SSYESFVHVIDSMLNQHAKWLEATVREIPWRKPISSVNLLVSSHVW-RQDH 568 (845)
T ss_dssp SEEECSCHHHHHHHHHHHHHT-TCEEEE-EEEHHHHGGGHHHHHHHHHHHHHHHHHCTTSCCCBCEEEEEESCGG-GCTT
T ss_pred cEeeeecHHHHHHHHHHHHhc-CCCCce-ecchhhhchhhhHHHHHHHHHHhhHHhhhhcccCCceEEEEeCCce-eecC
Confidence 566699999999999999955 655443 4444332 223344 3333 11 244 35544332221 2233
Q ss_pred C--CCCCCCHHHHhhcc---cccccccCCcCcHHHHHHHHHHHhhcCCCceEEEEe
Q 048725 195 D--AFQETPIVEVTRSI---TKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDV 245 (661)
Q Consensus 195 ~--~~q~~~~~~~~~~i---tk~~~~v~~~~~i~~~i~~A~~~a~s~~~GPV~I~i 245 (661)
+ .+|.+.+.++++.. .--+.+|-.|.|..+ +..|++.|...+ +|+++.+
T Consensus 569 DGpTHQ~~e~~d~l~~~r~~~iPn~~V~~PaDane-t~~a~~~al~~~-~~~~v~v 622 (845)
T 3ahc_A 569 NGFSHQDPGVTSLLINKTFNNDHVTNIYFATDANM-LLAISEKCFKST-NKINAIF 622 (845)
T ss_dssp TCGGGCCCTHHHHHGGGCCTTCCCEEEEECCSHHH-HHHHHHHHHHCB-SCEEEEE
T ss_pred CCCCCCCcHHHHHHHHhhccCCCCeEEEeCCCHHH-HHHHHHHHHHcC-CCeEEEE
Confidence 2 35665566666654 223445556666544 455777777655 6777666
No 154
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=34.66 E-value=20 Score=32.39 Aligned_cols=69 Identities=23% Similarity=0.224 Sum_probs=42.3
Q ss_pred ccCCCCCCCcHHHHHHHHHHHCCCC----EEEeccCCCcHHHH-HHHHcCCCCeEE----------ccCChhHHHHHHHH
Q 048725 80 SRFAPDQPRKGADILVEALERQGVT----DVFAYPGGASMEIH-QALTRSNNIRNV----------LPRHEQGGIFAAEG 144 (661)
Q Consensus 80 ~~~~~~~~~~gad~lv~~L~~~GV~----~vFg~PG~~~~~l~-~aL~~~~~i~~v----------~~~hE~~A~~~A~G 144 (661)
+||...-.-.--+--.+.|+++|++ .++-+||...+|+. ..|.++....-| ..++|-.+...+.|
T Consensus 20 arfn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~V~~~vs~G 99 (154)
T 1rvv_A 20 GRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETKKYDAIITLGTVIRGATTHYDYVCNEAAKG 99 (154)
T ss_dssp ESTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHHTSCCSEEEEEEEEECCSSSHHHHHHHHHHHH
T ss_pred EeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeeeecCCchHHHHHHHHHHHH
Confidence 5665531112223446889999997 79999999999997 445544322221 22356666666666
Q ss_pred HHHH
Q 048725 145 YARS 148 (661)
Q Consensus 145 yar~ 148 (661)
..++
T Consensus 100 l~~v 103 (154)
T 1rvv_A 100 IAQA 103 (154)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 155
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=34.55 E-value=2.5e+02 Score=27.01 Aligned_cols=88 Identities=10% Similarity=-0.040 Sum_probs=56.5
Q ss_pred CCcHHHHHHHHHHHCC--CCEEEeccCCC--------cHHHHHHHHcCCCCeEEccC--Ch-hHHHHHHHHHHHHhCCcE
Q 048725 87 PRKGADILVEALERQG--VTDVFAYPGGA--------SMEIHQALTRSNNIRNVLPR--HE-QGGIFAAEGYARSSGKPG 153 (661)
Q Consensus 87 ~~~gad~lv~~L~~~G--V~~vFg~PG~~--------~~~l~~aL~~~~~i~~v~~~--hE-~~A~~~A~Gyar~tg~~g 153 (661)
...++..+++.|.+.| -+++..+-|.. ...+.++|.+. +++++... .. ..+--++..+-+...++-
T Consensus 112 ~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (297)
T 3rot_A 112 NLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAYGIKTILQDK-GIFFEELDVGTDPNQVQSRVKSYFKIHPETN 190 (297)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHHHHHHHHT-TCEEEEEECCSCHHHHHHHHHHHHHHCTTCC
T ss_pred hHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhc-CCeEEEeecCCChHHHHHHHHHHHHhCCCCC
Confidence 3557888999999999 88877665543 24566777776 56654332 22 233333334344456678
Q ss_pred EEEEccchhhHHHHHHHHHhhh
Q 048725 154 ICIATSGPGATNLVSGLADALL 175 (661)
Q Consensus 154 v~~~tsGpG~~N~l~gl~~A~~ 175 (661)
++++.+...+..++.++.++-.
T Consensus 191 ai~~~~d~~A~g~~~al~~~g~ 212 (297)
T 3rot_A 191 IIFCLTSQALDPLGQMLLHPDR 212 (297)
T ss_dssp EEEESSHHHHHHHHHHHHSHHH
T ss_pred EEEEcCCcchHHHHHHHHhcCC
Confidence 8888888777777777776655
No 156
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=32.93 E-value=80 Score=30.29 Aligned_cols=80 Identities=19% Similarity=0.240 Sum_probs=46.6
Q ss_pred CCCcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccc----------cCh
Q 048725 467 NGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFI----------MNV 536 (661)
Q Consensus 467 ~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~----------~~~ 536 (661)
.+..+++++.++. .+ -.|-+|+++...|.||+++. -+++..+..|+++.|+.+.. -+.
T Consensus 7 ~gk~vlVTgG~T~-------E~-iDpVR~itN~SSg~iG~aiA----~~~~~~Ga~V~l~~~~~~l~~~~g~~~~dv~~~ 74 (226)
T 1u7z_A 7 KHLNIMITAGPTR-------EP-LDPVRYISDHSSGKMGFAIA----AAAARRGANVTLVSGPVSLPTPPFVKRVDVMTA 74 (226)
T ss_dssp TTCEEEEEESBCE-------EE-SSSSEEEEECCCSHHHHHHH----HHHHHTTCEEEEEECSCCCCCCTTEEEEECCSH
T ss_pred CCCEEEEECCCCC-------cc-cCceeeccCCCccHHHHHHH----HHHHHCCCEEEEEECCcccccCCCCeEEccCcH
Confidence 4556777776642 22 24899999887665665544 44455567788887765432 135
Q ss_pred HHHHHHHHcCCCeEEEEEeCCc
Q 048725 537 QELATIKVEKLPIKILLLNNQH 558 (661)
Q Consensus 537 ~eL~ta~~~~lpv~ivV~NN~g 558 (661)
.++..++....+-.=+++||-+
T Consensus 75 ~~~~~~v~~~~~~~Dili~~Aa 96 (226)
T 1u7z_A 75 LEMEAAVNASVQQQNIFIGCAA 96 (226)
T ss_dssp HHHHHHHHHHGGGCSEEEECCB
T ss_pred HHHHHHHHHhcCCCCEEEECCc
Confidence 6665555433332335666665
No 157
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=32.52 E-value=2.2e+02 Score=33.21 Aligned_cols=113 Identities=14% Similarity=0.025 Sum_probs=66.1
Q ss_pred EccCChhHH-H---HHHHHHHHHhC--CcEEEEEccchhhHHHHHHHHHh-hhCCCcEEEEecCCCCcccCCC--CCCCC
Q 048725 130 VLPRHEQGG-I---FAAEGYARSSG--KPGICIATSGPGATNLVSGLADA-LLDSVPLVAITGQVPRRMIGTD--AFQET 200 (661)
Q Consensus 130 v~~~hE~~A-~---~~A~Gyar~tg--~~gv~~~tsGpG~~N~l~gl~~A-~~~~iPll~ItG~~p~~~~g~~--~~q~~ 200 (661)
-....|++| + .+|.|||...+ +|-++ .-+-=+..-+.--+..+ .+.+.++++ .+.......+.+ .+|.+
T Consensus 566 d~GIaE~~a~~~~~g~a~GlA~~G~~~~P~~~-~ys~F~~qRa~Dqi~~~~d~~~~~v~l-~~~~~~~~~g~dG~tHq~~ 643 (886)
T 2qtc_A 566 QEGINELGAGCSWLAAATSYSTNNLPMIPFYI-YYSMFGFQRIGDLCWAAGDQQARGFLI-GGTSGRTTLNGEGLQHEDG 643 (886)
T ss_dssp ECCSCHHHHHHHHHHHHTHHHHTSCCCEEEEE-EEGGGSHHHHHHHHHHHHHTTCCCEEE-EESCSTTTSTTTCTTTCCS
T ss_pred eeccCchhhhhHHHHHHHHHHhcCCCceEEEE-EehHHHHHHHHHHHHHHHHHhcCCEEE-EEecCcccCCCCCCccCCc
Confidence 446899997 4 68999997762 55433 22222232333333333 344455544 443332222322 35666
Q ss_pred CHHHHhhcccccc-cccCCcCcHHHHHHHHHHHhhcCCCce----EEEEeccc
Q 048725 201 PIVEVTRSITKHN-YLVLDVDDIPRIVREAFLLATSGRPGP----VLIDVPKD 248 (661)
Q Consensus 201 ~~~~~~~~itk~~-~~v~~~~~i~~~i~~A~~~a~s~~~GP----V~I~iP~d 248 (661)
....+++.+.... +.+.++.++..+++.|++... || |+|-++..
T Consensus 644 ~~~a~lr~iPnl~V~~Pada~E~~~~l~~al~~~~----gP~~e~v~i~~~r~ 692 (886)
T 2qtc_A 644 HSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMY----GEKQENVYYYITTL 692 (886)
T ss_dssp CHHHHHTTSTTEEEECCSSHHHHHHHHHHHHHHHH----STTCCCCEEEEECC
T ss_pred chHHHHhhCCCCEEEecCCHHHHHHHHHHHHHhcC----CCCCceEEEEEeCC
Confidence 7778888875533 346677888888888887532 68 99988853
No 158
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=31.47 E-value=1.5e+02 Score=26.87 Aligned_cols=99 Identities=16% Similarity=0.173 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHCCCCEEEeccCCCcHHHHHH--HH-----cCCCCeEEccCChhHHH---H--------HHHHHHHHhCC
Q 048725 90 GADILVEALERQGVTDVFAYPGGASMEIHQA--LT-----RSNNIRNVLPRHEQGGI---F--------AAEGYARSSGK 151 (661)
Q Consensus 90 gad~lv~~L~~~GV~~vFg~PG~~~~~l~~a--L~-----~~~~i~~v~~~hE~~A~---~--------~A~Gyar~tg~ 151 (661)
.++.|++.+.+.+-=++||+-++......-+ |. ...+++.+....+.+-. . +...+...-++
T Consensus 37 ~~~~i~~~i~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (198)
T 2xbl_A 37 VADACIASIAQGGKVLLAGNGGSAADAQHIAGEFVSRFAFDRPGLPAVALTTDTSILTAIGNDYGYEKLFSRQVQALGNE 116 (198)
T ss_dssp HHHHHHHHHHTTCCEEEECSTHHHHHHHHHHHHHHSCSSSCCCCCCEEETTCCHHHHHHHHHHHCGGGTTHHHHHHHCCT
T ss_pred HHHHHHHHHHcCCEEEEEeCcHhhHHHHHHHHHHHhhhccCCCCCceEEecCChHHHHHhhccCCHHHHHHHHHHhhCCC
Confidence 4455666667776556666655544322221 21 11245555443232211 0 11122222222
Q ss_pred cEEEEEccchh-hHHHHHHHHHhhhCCCcEEEEecCCC
Q 048725 152 PGICIATSGPG-ATNLVSGLADALLDSVPLVAITGQVP 188 (661)
Q Consensus 152 ~gv~~~tsGpG-~~N~l~gl~~A~~~~iPll~ItG~~p 188 (661)
--++++-|-.| ..+.+..+-.|...+.++|.||+...
T Consensus 117 ~d~vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~~~ 154 (198)
T 2xbl_A 117 GDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRG 154 (198)
T ss_dssp TCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSCC
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 23344444444 56777888889999999999998643
No 159
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=31.42 E-value=1e+02 Score=27.74 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=29.1
Q ss_pred cccCCCCCCCcHHHHHHHHHHHCCCC---EEEeccCCCcHHHH-HHHHc
Q 048725 79 SSRFAPDQPRKGADILVEALERQGVT---DVFAYPGGASMEIH-QALTR 123 (661)
Q Consensus 79 ~~~~~~~~~~~gad~lv~~L~~~GV~---~vFg~PG~~~~~l~-~aL~~ 123 (661)
++||..+.-. +--.+.|+++|++ .++-+||...+|+. ..|.+
T Consensus 9 ~arfn~~~Ll---~gA~~~L~~~G~~~~i~~~~VPGafEiP~aak~la~ 54 (156)
T 2b99_A 9 DTTFARVDMA---SIAIKKLKELSPNIKIIRKTVPGIKDLPVACKKLLE 54 (156)
T ss_dssp EESSCSSCCH---HHHHHHHHHHCTTCEEEEEEESSGGGHHHHHHHHHH
T ss_pred EEecchHHHH---HHHHHHHHHcCCCCeEEEEECCcHHHHHHHHHHHHh
Confidence 3677663222 5567889999985 34899999999997 33443
No 160
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=30.98 E-value=26 Score=31.74 Aligned_cols=70 Identities=17% Similarity=0.311 Sum_probs=42.6
Q ss_pred cccCCCCCCCcHHHHHHHHHHHCCCC----EEEeccCCCcHHHH-HHHHcCCCCe----------EEccCChhHHHHHHH
Q 048725 79 SSRFAPDQPRKGADILVEALERQGVT----DVFAYPGGASMEIH-QALTRSNNIR----------NVLPRHEQGGIFAAE 143 (661)
Q Consensus 79 ~~~~~~~~~~~gad~lv~~L~~~GV~----~vFg~PG~~~~~l~-~aL~~~~~i~----------~v~~~hE~~A~~~A~ 143 (661)
++||...-.-.--+--.+.|+++|++ .++-+||...+|+. ..|.++.... =-..++|-.+...+.
T Consensus 17 ~arfn~~I~~~Ll~gA~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~Va~~vs~ 96 (158)
T 1di0_A 17 QARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGGIYDHDFVATAVIN 96 (158)
T ss_dssp EECTTHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHTSCCSEEEEEEECCCCSSBCCHHHHHHHHH
T ss_pred EEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeccccCCCcHHHHHHHHHHH
Confidence 36665541112223445888999986 69999999999997 4455443211 122346666666666
Q ss_pred HHHHH
Q 048725 144 GYARS 148 (661)
Q Consensus 144 Gyar~ 148 (661)
|..++
T Consensus 97 Gl~~v 101 (158)
T 1di0_A 97 GMMQV 101 (158)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66555
No 161
>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Probab=30.37 E-value=1.2e+02 Score=35.94 Aligned_cols=117 Identities=11% Similarity=0.101 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHhCC-----------------CcEEEEcCCcc--chHHHHHHHHHHhCCCeeecCCCCCCCCC--CC
Q 048725 275 PSEVHLEQIVRLISESK-----------------KPVLYVGGGCL--NSSEELRKFVELTGIPVASTLMGLGSFPG--TD 333 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~Ak-----------------rPvIv~G~g~~--~a~~~l~~lae~lg~PV~tt~~gkg~~p~--~h 333 (661)
..+++++.+++.|++.+ .-+.+.|++.. ...-.+.+|++.+|.+-+.+.......+. .+
T Consensus 125 SWdeAl~~iA~~l~~i~~~~g~~~~~~G~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~Gs~n~~~~~~~c~~~~~~~~ 204 (1015)
T 1kqf_A 125 SWEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLSTGMLCASGASNETGMLTQKFARSLGMLAVDNQARVXHGPTVASL 204 (1015)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCEEECTTSCEEEEBCSEEEECCTTSCHHHHHHHHHHHHHTTBCCEECGGGGTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhhcccccccCcccccCceEEEEeCCCCccHHHHHHHHHHHHhCCCCcCCcccccccHHHHHH
Confidence 45788888888887642 22455554332 22345688999999875442110000000 00
Q ss_pred CCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCC---cc-ccc-CCCCeEEEEcCCchhhcc
Q 048725 334 ELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTG---KL-EAF-ASRAKIVHIDIDSAEIGK 394 (661)
Q Consensus 334 pl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~---~~-~~~-~~~~~vi~Id~d~~~i~~ 394 (661)
...+|......+ -.-++++|+||++|+...+.... .+ +.. ...+|+|.||+.......
T Consensus 205 ~~~~G~~~~~~~---~~D~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~GaklivIDPr~t~ta~ 267 (1015)
T 1kqf_A 205 APTFGRGAMTNH---WVDIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPRFTRTAS 267 (1015)
T ss_dssp HHHHSCCSCSSC---TGGGGGCSEEEEESCCHHHHSTTTTHHHHHHHHHSCCEEEEECSSCCHHHH
T ss_pred HHHhCCCCCCCC---HHHHhhCCEEEEECCChhhhCchHHHHHHHHHHHCCCeEEEEeCCCCchhH
Confidence 001111000111 12367899999999886432211 11 122 356799999987665443
No 162
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=29.81 E-value=57 Score=26.40 Aligned_cols=30 Identities=13% Similarity=0.265 Sum_probs=24.6
Q ss_pred HHHHHhHcCCCEeeeCCHHHHHHHHHHHHh
Q 048725 592 MLKFAEACGIPGAQVTRKADLRAAIQTMLD 621 (661)
Q Consensus 592 ~~~~A~a~G~~~~~v~~~~el~~al~~a~~ 621 (661)
|..-.+--|++...|++++++++.|++.+.
T Consensus 93 fsrevrrrgfevrtvtspddfkkslerlir 122 (134)
T 2l69_A 93 FSREVRRRGFEVRTVTSPDDFKKSLERLIR 122 (134)
T ss_dssp HHHHHHHTTCCEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCceEEEecChHHHHHHHHHHHH
Confidence 455556668899999999999999998775
No 163
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=29.34 E-value=1.9e+02 Score=26.19 Aligned_cols=98 Identities=15% Similarity=0.111 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHCCCCEEEeccCCCcHHH--HHHHHc-----CCCCeEEccCChhHH----------H-HHHHH-HHHHhC
Q 048725 90 GADILVEALERQGVTDVFAYPGGASMEI--HQALTR-----SNNIRNVLPRHEQGG----------I-FAAEG-YARSSG 150 (661)
Q Consensus 90 gad~lv~~L~~~GV~~vFg~PG~~~~~l--~~aL~~-----~~~i~~v~~~hE~~A----------~-~~A~G-yar~tg 150 (661)
..+.+++.|.+.+-=++||+-++..... ...|.. ..+++.+....+.+. . ..+.- -...+.
T Consensus 30 ~~~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~~~~~ 109 (196)
T 2yva_A 30 AAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGHA 109 (196)
T ss_dssp HHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHTCSSSCCCCCCEEESSCCHHHHHHHTTSTTGGGHHHHHHHHHCCT
T ss_pred HHHHHHHHHHcCCEEEEEeCchhhHHHHHHHHHHhccccccCCCCceEeecCchHHHHHHhcCCCHHHHHHHHHHhcCCC
Confidence 4577888998888777888866543322 222331 335665554422111 0 00100 022222
Q ss_pred CcEEEEEccch-hhHHHHHHHHHhhhCCCcEEEEecCCC
Q 048725 151 KPGICIATSGP-GATNLVSGLADALLDSVPLVAITGQVP 188 (661)
Q Consensus 151 ~~gv~~~tsGp-G~~N~l~gl~~A~~~~iPll~ItG~~p 188 (661)
+ -++++-|.. ...+.+.++..|...+.++|.||+...
T Consensus 110 ~-DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~ 147 (196)
T 2yva_A 110 G-DVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDG 147 (196)
T ss_dssp T-CEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTC
T ss_pred C-CEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 2 233344444 467778888889999999999998654
No 164
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=29.19 E-value=4.5e+02 Score=26.38 Aligned_cols=123 Identities=17% Similarity=0.126 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHHhC----CCcEEEEcCCccchHHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCCcHHHHHh
Q 048725 276 SEVHLEQIVRLISES----KKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYA 351 (661)
Q Consensus 276 ~~~~l~~~~~~L~~A----krPvIv~G~g~~~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g~~~a~~~ 351 (661)
..+.+-++++.+... .--++++|.|.....+.+.++++.++ .++.- .|.........+
T Consensus 266 g~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~-~~~~~-----------------~g~~~~~~~~~~ 327 (439)
T 3fro_A 266 GVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHG-NVKVI-----------------TEMLSREFVREL 327 (439)
T ss_dssp CHHHHHHHHHHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCT-TEEEE-----------------CSCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCeEEEEEcCCChhHHHHHHHHHhhcC-CEEEE-----------------cCCCCHHHHHHH
Confidence 345555566666542 23478888876555688889998887 54321 122233456678
Q ss_pred hhcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCch-hhccCCCCcceEe-ccHHHHHHHHHHHhc
Q 048725 352 VDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSA-EIGKNKQPHVSVC-ADLKLALKGINRILG 418 (661)
Q Consensus 352 l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~-~i~~~~~~~~~i~-~D~~~~L~~L~~~l~ 418 (661)
+..||++|.-- ........-++.+.-+..+|.-+.... ++-... ..+.+. .|..+..++|.+.+.
T Consensus 328 ~~~adv~v~ps-~~e~~~~~~~EAma~G~Pvi~s~~~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 328 YGSVDFVIIPS-YFEPFGLVALEAMCLGAIPIASAVGGLRDIITNE-TGILVKAGDPGELANAILKALE 394 (439)
T ss_dssp HTTCSEEEECB-SCCSSCHHHHHHHHTTCEEEEESSTHHHHHCCTT-TCEEECTTCHHHHHHHHHHHHH
T ss_pred HHHCCEEEeCC-CCCCccHHHHHHHHCCCCeEEcCCCCcceeEEcC-ceEEeCCCCHHHHHHHHHHHHh
Confidence 89999987543 322222222345556667777665422 121111 223232 478888888877765
No 165
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=28.05 E-value=1e+02 Score=29.16 Aligned_cols=75 Identities=28% Similarity=0.373 Sum_probs=42.9
Q ss_pred CcEEEEECCcccccChHHHHHHHHcC---CCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHh
Q 048725 521 AIIVDIDGDGSFIMNVQELATIKVEK---LPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAE 597 (661)
Q Consensus 521 ~~vv~i~GDGsf~~~~~eL~ta~~~~---lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~ 597 (661)
|.+|.+.|.|+ +++.|..+.+.+ ..+..||-|+..- .-...|+
T Consensus 2 riaVl~SG~Gs---~L~aLi~~~~~~~~~~~I~~Vvs~~~~~-------------------------------~~~~~A~ 47 (209)
T 1meo_A 2 RVAVLISGTGS---NLQALIDSTREPNSSAQIDIVISNKAAV-------------------------------AGLDKAE 47 (209)
T ss_dssp EEEEEESSSCT---THHHHHHHHHSTTCSCEEEEEEESSTTC-------------------------------HHHHHHH
T ss_pred eEEEEEECCch---HHHHHHHHHhcCCCCcEEEEEEeCCCCh-------------------------------HHHHHHH
Confidence 45678889886 456666554443 4456666665431 1124677
Q ss_pred HcCCCEeee-----CCHHHHHHHHHHHHhCCCcEEEE
Q 048725 598 ACGIPGAQV-----TRKADLRAAIQTMLDTPGPYLLD 629 (661)
Q Consensus 598 a~G~~~~~v-----~~~~el~~al~~a~~~~gp~lIe 629 (661)
.+|++...+ .+.+++.+.+.+.++.-+|-+|-
T Consensus 48 ~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv 84 (209)
T 1meo_A 48 RAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVC 84 (209)
T ss_dssp HTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred HcCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEE
Confidence 777776643 34455555555555555565543
No 166
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=27.96 E-value=1.1e+02 Score=25.81 Aligned_cols=81 Identities=15% Similarity=0.177 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHhCCCeee-cCCCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCCEEEEeCCCCCCCcCCcccccCCCCeE
Q 048725 304 SSEELRKFVELTGIPVAS-TLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKI 382 (661)
Q Consensus 304 a~~~l~~lae~lg~PV~t-t~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~v 382 (661)
+.+.|.+.|+++|+.+-. |....|+- ++| ..+-+++||+||+.+..-.+ ....| .++++
T Consensus 24 AAeaL~~aA~~~G~~ikVEtqGs~G~~---n~L------------t~~~I~~Ad~VIiA~d~~v~----~~~RF-~GK~v 83 (111)
T 2kyr_A 24 AAQALEEAAVEAGYEVKIETQGADGIQ---NRL------------TAQDIAEATIIIHSVAVTPE----DNERF-ESRDV 83 (111)
T ss_dssp HHHHHHHHHHHTSSEEEEEEEETTEEE---SCC------------CHHHHHHCSEEEEEESSCCT----TGGGG-TTSCE
T ss_pred HHHHHHHHHHHCCCeEEEEecCCCCcC---CCC------------CHHHHHhCCEEEEEeCCCcC----chhhc-CCCeE
Confidence 578899999999999965 33323321 222 13457899999999865421 11233 35688
Q ss_pred EEEcCCchhhccCCCCcceEeccHHHHHHHHHHH
Q 048725 383 VHIDIDSAEIGKNKQPHVSVCADLKLALKGINRI 416 (661)
Q Consensus 383 i~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~ 416 (661)
++++++.. ..|...+|+.....
T Consensus 84 ~~~~v~~a------------i~~p~~~l~~a~~~ 105 (111)
T 2kyr_A 84 YEITLQDA------------IKNAAGIIKEIEEM 105 (111)
T ss_dssp EEEETTHH------------HHSHHHHHHHHHHH
T ss_pred EEeCHHHH------------HHCHHHHHHHHHHH
Confidence 88887653 24566666665443
No 167
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=27.86 E-value=68 Score=30.41 Aligned_cols=74 Identities=19% Similarity=0.253 Sum_probs=42.6
Q ss_pred CcEEEEECCcccccChHHHHHHHHcC---CCeEEEEEeCCcchhHHHHHHHhhcccccccccCCCCCcccCCccHHHHHh
Q 048725 521 AIIVDIDGDGSFIMNVQELATIKVEK---LPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAE 597 (661)
Q Consensus 521 ~~vv~i~GDGsf~~~~~eL~ta~~~~---lpv~ivV~NN~g~g~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~d~~~~A~ 597 (661)
|.+|.+.|.|+. ++.|..+.+.+ ..+..||-|+.. ....+.|+
T Consensus 2 ri~vl~Sg~gsn---l~ali~~~~~~~~~~~i~~Vis~~~~-------------------------------~~~~~~A~ 47 (212)
T 1jkx_A 2 NIVVLISGNGSN---LQAIIDACKTNKIKGTVRAVFSNKAD-------------------------------AFGLERAR 47 (212)
T ss_dssp EEEEEESSCCHH---HHHHHHHHHTTSSSSEEEEEEESCTT-------------------------------CHHHHHHH
T ss_pred EEEEEEECCcHH---HHHHHHHHHcCCCCceEEEEEeCCCc-------------------------------hHHHHHHH
Confidence 456778888874 66766665444 335556665432 11235677
Q ss_pred HcCCCEeeeC-----CHHHHHHHHHHHHhCCCcEEE
Q 048725 598 ACGIPGAQVT-----RKADLRAAIQTMLDTPGPYLL 628 (661)
Q Consensus 598 a~G~~~~~v~-----~~~el~~al~~a~~~~gp~lI 628 (661)
.+|++...++ +.+++.+.+.+.++.-+|-+|
T Consensus 48 ~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dli 83 (212)
T 1jkx_A 48 QAGIATHTLIASAFDSREAYDRELIHEIDMYAPDVV 83 (212)
T ss_dssp HTTCEEEECCGGGCSSHHHHHHHHHHHHGGGCCSEE
T ss_pred HcCCcEEEeCcccccchhhccHHHHHHHHhcCCCEE
Confidence 7777776553 344555556666655555544
No 168
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=27.59 E-value=3.8e+02 Score=24.99 Aligned_cols=88 Identities=7% Similarity=-0.000 Sum_probs=55.0
Q ss_pred CCcHHHHHHHHHHHC----CCCEEEeccCCC--------cHHHHHHHHcCCCCeEEccC----ChhHHHHHHHHHHHHhC
Q 048725 87 PRKGADILVEALERQ----GVTDVFAYPGGA--------SMEIHQALTRSNNIRNVLPR----HEQGGIFAAEGYARSSG 150 (661)
Q Consensus 87 ~~~gad~lv~~L~~~----GV~~vFg~PG~~--------~~~l~~aL~~~~~i~~v~~~----hE~~A~~~A~Gyar~tg 150 (661)
...++..+++.|.+. |-++|..+-|.. ...+.+++.+++++++.... +...+--++.-+-+...
T Consensus 107 ~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 186 (276)
T 3ksm_A 107 NYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQGFLDVLRKHDKIRIIAAPYAGDDRGAARSEMLRLLKETP 186 (276)
T ss_dssp HHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHHHHHHHHTTCTTEEEEECCBCCSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHHHHHHHHHhCCCcEEEEEecCCCcHHHHHHHHHHHHHhCC
Confidence 345788899999998 999988776653 23466677766566654221 22333333333433445
Q ss_pred CcEEEEEccchhhHHHHHHHHHhh
Q 048725 151 KPGICIATSGPGATNLVSGLADAL 174 (661)
Q Consensus 151 ~~gv~~~tsGpG~~N~l~gl~~A~ 174 (661)
++-++++.+...+..++.++.++-
T Consensus 187 ~~~ai~~~~d~~a~g~~~al~~~g 210 (276)
T 3ksm_A 187 TIDGLFTPNESTTIGALVAIRQSG 210 (276)
T ss_dssp CCCEEECCSHHHHHHHHHHHHHTT
T ss_pred CceEEEECCchhhhHHHHHHHHcC
Confidence 788888887766666666666553
No 169
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=27.36 E-value=79 Score=26.51 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=24.3
Q ss_pred CCcEEEEcCCccc--hHHHHHHHHHHhCCCeee
Q 048725 291 KKPVLYVGGGCLN--SSEELRKFVELTGIPVAS 321 (661)
Q Consensus 291 krPvIv~G~g~~~--a~~~l~~lae~lg~PV~t 321 (661)
.|.++++++|... ....+++.|+..|+++-.
T Consensus 7 mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i 39 (108)
T 3nbm_A 7 LKVLVLCAGSGTSAQLANAINEGANLTEVRVIA 39 (108)
T ss_dssp EEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCceEE
Confidence 3578889988753 357889999999999854
No 170
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=27.09 E-value=26 Score=31.71 Aligned_cols=70 Identities=20% Similarity=0.223 Sum_probs=42.3
Q ss_pred cccCCCCCCCcHHHHHHHHHHHCCCC---EEEeccCCCcHHHH-HHHHcCCCCeE----------EccCChhHHHHHHHH
Q 048725 79 SSRFAPDQPRKGADILVEALERQGVT---DVFAYPGGASMEIH-QALTRSNNIRN----------VLPRHEQGGIFAAEG 144 (661)
Q Consensus 79 ~~~~~~~~~~~gad~lv~~L~~~GV~---~vFg~PG~~~~~l~-~aL~~~~~i~~----------v~~~hE~~A~~~A~G 144 (661)
++||...-.-.--+--.+.|+++|++ .++-+||...+|+. +.|.++....- -..++|-.+...+.|
T Consensus 20 ~arfn~~I~~~Ll~ga~~~l~~~Gv~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~Va~~v~~g 99 (156)
T 1c2y_A 20 VARFNEFVTRRLMEGALDTFKKYSVNEDIDVVWVPGAYELGVTAQALGKSGKYHAIVCLGAVVKGDTSHYDAVVNSASSG 99 (156)
T ss_dssp EESTTHHHHHHHHHHHHHHHHHTTCCSCCEEEEESSHHHHHHHHHHHHHTTCCSEEEEEEECCCCSSTHHHHHHHHHHHH
T ss_pred EEeCcHHHHHHHHHHHHHHHHHcCCCCceEEEECCcHHHHHHHHHHHHhcCCCCEEEEecccccCCchHHHHHHHHHHHH
Confidence 35665531112223445889999985 89999999999997 44554432211 122356666666666
Q ss_pred HHHH
Q 048725 145 YARS 148 (661)
Q Consensus 145 yar~ 148 (661)
..++
T Consensus 100 l~~v 103 (156)
T 1c2y_A 100 VLSA 103 (156)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6665
No 171
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=27.01 E-value=46 Score=30.09 Aligned_cols=69 Identities=20% Similarity=0.331 Sum_probs=41.2
Q ss_pred ccCCCCCCCcHHHHHHHHHHHCCCC----EEEeccCCCcHHHH-HHHHcCC---CCeE-------EccCChhHHHHHHHH
Q 048725 80 SRFAPDQPRKGADILVEALERQGVT----DVFAYPGGASMEIH-QALTRSN---NIRN-------VLPRHEQGGIFAAEG 144 (661)
Q Consensus 80 ~~~~~~~~~~gad~lv~~L~~~GV~----~vFg~PG~~~~~l~-~aL~~~~---~i~~-------v~~~hE~~A~~~A~G 144 (661)
+||...-.-.--+--.+.|+++|++ .++-+||...+|+. ..|.++. .+=. -..++|-.+...+.|
T Consensus 19 arfn~~I~~~Ll~gA~~~l~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~Va~~vs~G 98 (157)
T 2obx_A 19 ARWHADIVDQCVSAFEAEMADIGGDRFAVDVFDVPGAYEIPLHARTLAETGRYGAVLGTAFVVNGGIYRHEFVASAVIDG 98 (157)
T ss_dssp ECTTHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHHTCCSEEEEEEECCCCSSBCCHHHHHHHHHH
T ss_pred eeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeccccCCCcHHHHHHHHHHHH
Confidence 5665531112223445788999986 59999999999997 4454332 2111 122366666666666
Q ss_pred HHHH
Q 048725 145 YARS 148 (661)
Q Consensus 145 yar~ 148 (661)
..++
T Consensus 99 l~~v 102 (157)
T 2obx_A 99 MMNV 102 (157)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6555
No 172
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=26.89 E-value=1.3e+02 Score=27.60 Aligned_cols=97 Identities=20% Similarity=0.245 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHCCCCEEEeccCCCcHH--HHHHHH-----cCCCCeEEccCChhHHHHHHH----HH---------HHHh
Q 048725 90 GADILVEALERQGVTDVFAYPGGASME--IHQALT-----RSNNIRNVLPRHEQGGIFAAE----GY---------ARSS 149 (661)
Q Consensus 90 gad~lv~~L~~~GV~~vFg~PG~~~~~--l~~aL~-----~~~~i~~v~~~hE~~A~~~A~----Gy---------ar~t 149 (661)
..+.+++.|.+.+-=++||+-++.... +...|. ...+++.+..... ...+.|. +| ...+
T Consensus 34 ~~~~i~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~ 112 (199)
T 1x92_A 34 ASLVMVNALLNEGKILSCGNGGSAGDAQHFSSELLNRFERERPSLPAVALTTD-SSTITSIANDYSYNEVFSKQIRALGQ 112 (199)
T ss_dssp HHHHHHHHHHTTCCEEEECSTHHHHHHHHHHHHHHTCSSSCCCCCCEEETTCC-HHHHHHHHHHTCGGGTTHHHHHHHCC
T ss_pred HHHHHHHHHHCCCEEEEEcCchhHHHHHHHHHHHhcCcccCCCCCceEecCCC-hhHHHHhhcCccHHHHHHHHHHhCCC
Confidence 456677888887765667765544322 222231 2234555543321 1111111 11 1222
Q ss_pred CCcEEEEEccchh-hHHHHHHHHHhhhCCCcEEEEecCCC
Q 048725 150 GKPGICIATSGPG-ATNLVSGLADALLDSVPLVAITGQVP 188 (661)
Q Consensus 150 g~~gv~~~tsGpG-~~N~l~gl~~A~~~~iPll~ItG~~p 188 (661)
+--++++-|..| ..+.+.++-.|...+.++|.||+...
T Consensus 113 -~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~ 151 (199)
T 1x92_A 113 -PGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDG 151 (199)
T ss_dssp -TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTC
T ss_pred -CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 223344444444 67788888889999999999998543
No 173
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=26.60 E-value=80 Score=27.07 Aligned_cols=84 Identities=12% Similarity=0.134 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhCCC--cEEEEcCCcc-------------chHHHHHHHHHHhCCCeeec---CCCCCCCCC---------
Q 048725 279 HLEQIVRLISESKK--PVLYVGGGCL-------------NSSEELRKFVELTGIPVAST---LMGLGSFPG--------- 331 (661)
Q Consensus 279 ~l~~~~~~L~~Akr--PvIv~G~g~~-------------~a~~~l~~lae~lg~PV~tt---~~gkg~~p~--------- 331 (661)
.++-+..++..... -|++.+.|+. +..+.+++|++..|++++.. ...+|+.++
T Consensus 20 al~~a~a~~~~g~~v~~vff~~dGV~~~~~~~~p~~~~~~l~~~~~~L~~~~gv~l~vC~~~~~~RGl~~~~~~~~~~~~ 99 (130)
T 2hy5_A 20 AYQFAKAALEKGHEIFRVFFYHDGVNNSTRLTTPPQDDRHIVNRWAELAEQYELDMVVCVAAAQRRGIVDEGEASRNGKD 99 (130)
T ss_dssp HHHHHHHHHHTTCEEEEEEECGGGGGGGBSCCCCCTTSCCHHHHHHHHHHHHTCCEEEEHHHHHHHTCCCHHHHHHHTCS
T ss_pred HHHHHHHHHhcCCeeCEEEEechHHHHHhcCCCCCcccCCHHHHHHHHHHHcCCeEEEeHHHHHHcCCChhhhhhhcccc
Confidence 34333344443333 4777888774 12456888988889998653 345676543
Q ss_pred CCCCCCcccCCCCcHHHHHhhhcCCEEEEeCC
Q 048725 332 TDELSLQMLGMHGTVYANYAVDKSDLLLAFGV 363 (661)
Q Consensus 332 ~hpl~lg~~G~~g~~~a~~~l~~aDlvL~vG~ 363 (661)
.+++..|. -..|-....+.+.++|.||.+|.
T Consensus 100 ~~~l~~g~-~i~~~~~l~~~~~~aD~vi~f~~ 130 (130)
T 2hy5_A 100 ATNIHPKF-RISGLGQLVEAAIQADRLVVFGD 130 (130)
T ss_dssp CCCBCTTC-EEECTHHHHHHHHHSSEEEEECC
T ss_pred cccccCCe-EEeCHHHHHHHHHhCCEEEEeCC
Confidence 11343332 11234456678889999999973
No 174
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}
Probab=26.18 E-value=17 Score=41.44 Aligned_cols=112 Identities=14% Similarity=0.174 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHhC------CCcEEEEcCCcc-chHHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCc---ccCCCC
Q 048725 275 PSEVHLEQIVRLISES------KKPVLYVGGGCL-NSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQ---MLGMHG 344 (661)
Q Consensus 275 ~~~~~l~~~~~~L~~A------krPvIv~G~g~~-~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg---~~G~~g 344 (661)
..+++++.+++.|++. +...++.|.+.. ...-.+.+|++.+|.+-+....... . .+...+ ++|...
T Consensus 79 sWdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~G~~n~~~~~~~c-~---~~~~~~~~~~~G~~~ 154 (727)
T 2e7z_A 79 SWDQALDEIAEKLKKIIAKYGPESLGVSQTEINQQSEYGTLRRFMNLLGSPNWTSAMYMC-I---GNTAGVHRVTHGSYS 154 (727)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCGGGEEEEECGGGTCCCTTHHHHHHHHHTCCCEECGGGGT-T---HHHHHHHHHHHSSCE
T ss_pred cHHHHHHHHHHHHHHHHHhhCCcEEEEEeCCCCCccchHHHHHHHHHcCCCCccCCcccc-h---hHHHHHHHHhcCCCC
Confidence 4578888888888763 234444454332 2113347899999987554311100 0 000001 122110
Q ss_pred cHHHHHhhhcCCEEEEeCCCCCCCcC-Ccccc----cCCCCeEEEEcCCchhhcc
Q 048725 345 TVYANYAVDKSDLLLAFGVRFDDRVT-GKLEA----FASRAKIVHIDIDSAEIGK 394 (661)
Q Consensus 345 ~~~a~~~l~~aDlvL~vG~~~~~~~t-~~~~~----~~~~~~vi~Id~d~~~i~~ 394 (661)
. .-++++|+||++|+.+.+... ..+.. ..+..|+|.||+.......
T Consensus 155 ---~-~d~~~ad~il~~G~n~~~~~p~~~~~~l~~a~~~G~klividPr~t~ta~ 205 (727)
T 2e7z_A 155 ---F-ASFADSNCLLFIGKNLSNHNWVSQFNDLKAALKRGCKLIVLDPRRTKVAE 205 (727)
T ss_dssp ---E-ECTTTCSEEEEESCCCBTTBSHHHHHHHHHHHHHTCEEEEECSSCCHHHH
T ss_pred ---C-CCcccCCEEEEECCChhhcCCHHHHHHHHHHHHCCCeEEEECCCCCcchh
Confidence 0 136899999999999754433 11111 1245799999987765443
No 175
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=25.98 E-value=48 Score=30.35 Aligned_cols=45 Identities=13% Similarity=0.125 Sum_probs=30.0
Q ss_pred cccCCCCCCCcHHHHHHHHHHHCCCC----EEEeccCCCcHHHH-HHHHc
Q 048725 79 SSRFAPDQPRKGADILVEALERQGVT----DVFAYPGGASMEIH-QALTR 123 (661)
Q Consensus 79 ~~~~~~~~~~~gad~lv~~L~~~GV~----~vFg~PG~~~~~l~-~aL~~ 123 (661)
++||...-.-.--+--.+.|+++|++ .++-+||...+|+. ..|.+
T Consensus 23 ~arfn~~I~~~Ll~gA~~~L~~~Gv~~~~i~v~~VPGafEiP~aak~la~ 72 (168)
T 1ejb_A 23 HARWNRVIIDALVKGAIERMASLGVEENNIIIETVPGSYELPWGTKRFVD 72 (168)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEECSSGGGHHHHHHHHHH
T ss_pred EEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHh
Confidence 36666541112233445889999987 58999999999997 33443
No 176
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=25.85 E-value=64 Score=30.75 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=22.7
Q ss_pred HHHhHcCCCEeeeC-----CHHHHHHHHHHHHhCCCcEEEEE
Q 048725 594 KFAEACGIPGAQVT-----RKADLRAAIQTMLDTPGPYLLDV 630 (661)
Q Consensus 594 ~~A~a~G~~~~~v~-----~~~el~~al~~a~~~~gp~lIeV 630 (661)
..|+.+|++...++ +.+++.+.+.+.++.-+|-+|-+
T Consensus 54 ~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dlivl 95 (215)
T 3da8_A 54 EIAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVS 95 (215)
T ss_dssp HHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHcCCCEEEeCcccccchhhhhHHHHHHHHhhCCCEEEE
Confidence 45777777777663 34556666666666666655443
No 177
>4au1_A Precorrin-8X methylmutase; isomerase, HBA; HET: P8X; 1.45A {Rhodobacter capsulatus}
Probab=24.93 E-value=91 Score=29.91 Aligned_cols=52 Identities=13% Similarity=0.276 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHhCC--CcEEEEcCCc--cchHHHHHHHHHHhCCCeeecCCCCC
Q 048725 276 SEVHLEQIVRLISESK--KPVLYVGGGC--LNSSEELRKFVELTGIPVASTLMGLG 327 (661)
Q Consensus 276 ~~~~l~~~~~~L~~Ak--rPvIv~G~g~--~~a~~~l~~lae~lg~PV~tt~~gkg 327 (661)
.+..+-+++++|.+.+ ||.+|+|--+ -++.+.-.+|++..++|.++...-||
T Consensus 157 APTAL~~Lleli~~~~~~rPalVIG~PVGFVgAaESK~~L~~~~~vP~I~~~GrkG 212 (229)
T 4au1_A 157 APTALFHLLNMLEDPACPRPAAIIGCPVGFIGAAESKAALAVANPVPWVIVEGRLG 212 (229)
T ss_dssp CHHHHHHHHHHTTSTTSCCCSEEEECCCCSSSHHHHHHHHHHHCCSSEEEECSSCC
T ss_pred cHHHHHHHHHHHHhcCCCCCCEEEEcCCCccChHHHHHHHHhCCCCCEEEEecCCC
Confidence 5788889999997653 8999999644 35555555677778899998765554
No 178
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=24.67 E-value=2.1e+02 Score=29.18 Aligned_cols=85 Identities=11% Similarity=0.080 Sum_probs=49.2
Q ss_pred HHHHHHHHHCCCCEEEeccCCCcHHHHHHHHcCCCCeEEcc-------------CChhHHHHHHHHH-HHH--hCCcEEE
Q 048725 92 DILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLP-------------RHEQGGIFAAEGY-ARS--SGKPGIC 155 (661)
Q Consensus 92 d~lv~~L~~~GV~~vFg~PG~~~~~l~~aL~~~~~i~~v~~-------------~hE~~A~~~A~Gy-ar~--tg~~gv~ 155 (661)
+..++.|.+.|++-||+.......++.+...+.++++++.+ .++.-++|.|--. +.+ +++.|.+
T Consensus 76 ~~~l~~l~~~g~d~Ii~~g~~~~~~~~~vA~~~Pdv~fv~id~~~~~~Nv~sv~~~~~eg~ylaG~~A~~~tk~~kIGfV 155 (356)
T 3s99_A 76 ERSIKRIARAGNKLIFTTSFGYMDPTVKVAKKFPDVKFEHATGYKTADNMSAYNARFYEGRYVQGVIAAKMSKKGIAGYI 155 (356)
T ss_dssp HHHHHHHHHTTCSEEEECSGGGHHHHHHHHTTCTTSEEEEESCCCCBTTEEEEEECHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEEeccccCCcEEEEEechhHHHHHHHHHHHHhcCCCEEEEE
Confidence 45678888899999999865555566555555565555543 1334455554322 122 4666665
Q ss_pred EEccchhhHHHHHHHHHhhhC
Q 048725 156 IATSGPGATNLVSGLADALLD 176 (661)
Q Consensus 156 ~~tsGpG~~N~l~gl~~A~~~ 176 (661)
-....|.....++|...+...
T Consensus 156 gg~~~p~v~~~~~GF~~G~k~ 176 (356)
T 3s99_A 156 GSVPVPEVVQGINSFMLGAQS 176 (356)
T ss_dssp ECCCCHHHHHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHHHHHH
Confidence 444455555556666555443
No 179
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=24.50 E-value=1.6e+02 Score=27.12 Aligned_cols=45 Identities=13% Similarity=0.269 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCccc-hHHHHHHHHHHhCCCeee
Q 048725 276 SEVHLEQIVRLISESKKPVLYVGGGCLN-SSEELRKFVELTGIPVAS 321 (661)
Q Consensus 276 ~~~~l~~~~~~L~~AkrPvIv~G~g~~~-a~~~l~~lae~lg~PV~t 321 (661)
+.+.+++++++|.+++| |+++|.|... ....+..-..++|.++..
T Consensus 33 ~~~~l~~~~~~i~~a~~-I~i~G~G~S~~~A~~~~~~l~~~g~~~~~ 78 (200)
T 1vim_A 33 DLETVGEMIKLIDSARS-IFVIGAGRSGYIAKAFAMRLMHLGYTVYV 78 (200)
T ss_dssp CHHHHHHHHHHHHHSSC-EEEECSHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHHHHhcCCE-EEEEEecHHHHHHHHHHHHHHhcCCeEEE
Confidence 56789999999999864 8888877643 233333333567888765
No 180
>3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.25A {Bacteroides fragilis}
Probab=24.24 E-value=2.3e+02 Score=28.80 Aligned_cols=112 Identities=15% Similarity=0.195 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCcc-----chHHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCC---CCc-H
Q 048725 276 SEVHLEQIVRLISESKKPVLYVGGGCL-----NSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGM---HGT-V 346 (661)
Q Consensus 276 ~~~~l~~~~~~L~~AkrPvIv~G~g~~-----~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~---~g~-~ 346 (661)
....++++.++|+++++ ++|.|.-.. ++.-.+.++++++|..+..-..+ -+|+...+..+.-.. ... .
T Consensus 7 ~~~~~~~l~~~i~~~~~-i~I~~H~~pD~DaiGS~~~l~~~l~~~g~~~~~~~~~--~~~~~~~fl~~~~~i~~~~~~~~ 83 (343)
T 3dma_A 7 AQAHIDHFTKWFERADK-IVIVSHVSPDGDAIGSSLGLYHFLDSQDKIVNVIVPN--AFPDFLKWMPGSKDILLYDRYQE 83 (343)
T ss_dssp CHHHHHHHHHHHHHCSE-EEEEECSSCCHHHHHHHHHHHHHHHHTSCEEEEEESS--CCCGGGTTSTTGGGCEETTTCHH
T ss_pred CHHHHHHHHHHHhcCCe-EEEEecCCCChHHHHHHHHHHHHHHHcCCCEEEECCC--CCchHhhhccCcchhcccccChH
Confidence 46778889999988765 667776532 35567888999999887553322 233322211111000 011 1
Q ss_pred HHHHhhhcCCEEEEeCCCCCCCcCCcccccC-CCCeEEEEcCCch
Q 048725 347 YANYAVDKSDLLLAFGVRFDDRVTGKLEAFA-SRAKIVHIDIDSA 390 (661)
Q Consensus 347 ~a~~~l~~aDlvL~vG~~~~~~~t~~~~~~~-~~~~vi~Id~d~~ 390 (661)
.+...+.+.|++++|-+.-.++.......+. ...+++.||..+.
T Consensus 84 ~~~~~~~~~~lvi~VD~~~~~r~~~~~~~l~~~~~~~ivIDHH~~ 128 (343)
T 3dma_A 84 FADKLIMEADVICCLDFNALKRIDEMSDIVAASPGRKIMIDHHLY 128 (343)
T ss_dssp HHHHHHHHCSEEEEESCSSGGGGTTCHHHHHHCCSEEEEEECCSS
T ss_pred HHhhcccCCCEEEEEeCCChHHhchhHHHHHhCCCCEEEEcCCCC
Confidence 2334556899999998875443321111111 2457888887665
No 181
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=24.04 E-value=59 Score=27.10 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=24.5
Q ss_pred CCcEEEEcCCccc--hHHHHHHHHHHhCCCeee
Q 048725 291 KKPVLYVGGGCLN--SSEELRKFVELTGIPVAS 321 (661)
Q Consensus 291 krPvIv~G~g~~~--a~~~l~~lae~lg~PV~t 321 (661)
+|.++++|.|... ..+.++++++..|+++-.
T Consensus 4 kkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i 36 (106)
T 1e2b_A 4 KHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVII 36 (106)
T ss_dssp EEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEE
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCCeEE
Confidence 4678899998863 356899999999999743
No 182
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=24.02 E-value=1.4e+02 Score=28.69 Aligned_cols=78 Identities=14% Similarity=0.119 Sum_probs=46.6
Q ss_pred CcEEEEcCChhHHHHHhhccccCCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCccccc------------Ch
Q 048725 469 EAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIM------------NV 536 (661)
Q Consensus 469 d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~~------------~~ 536 (661)
..+++++.|+. .++ .|-+|+++...|.||+++.-+ ++..+..|+++.|..+..- +.
T Consensus 4 k~vlVTgG~T~-------E~I-DpVR~ItN~SSG~mG~aiA~~----~~~~Ga~V~lv~~~~~~~~~~~~~~~~~~v~s~ 71 (232)
T 2gk4_A 4 MKILVTSGGTS-------EAI-DSVRSITNHSTGHLGKIITET----LLSAGYEVCLITTKRALKPEPHPNLSIREITNT 71 (232)
T ss_dssp CEEEEECSBCE-------EES-SSSEEEEECCCCHHHHHHHHH----HHHTTCEEEEEECTTSCCCCCCTTEEEEECCSH
T ss_pred CEEEEeCCCcc-------ccc-CceeeccCCCCCHHHHHHHHH----HHHCCCEEEEEeCCccccccCCCCeEEEEHhHH
Confidence 34666766642 222 378999998877777665444 4444778999999876431 35
Q ss_pred HHHHHHHHcCCCeEEEEEeCCc
Q 048725 537 QELATIKVEKLPIKILLLNNQH 558 (661)
Q Consensus 537 ~eL~ta~~~~lpv~ivV~NN~g 558 (661)
.++..+++...+-.=+++||-+
T Consensus 72 ~em~~~v~~~~~~~Dili~aAA 93 (232)
T 2gk4_A 72 KDLLIEMQERVQDYQVLIHSMA 93 (232)
T ss_dssp HHHHHHHHHHGGGCSEEEECSB
T ss_pred HHHHHHHHHhcCCCCEEEEcCc
Confidence 6666555443332224555554
No 183
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=23.80 E-value=77 Score=30.00 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=21.1
Q ss_pred HHHHHhHcCCCEeeeC-----CHHHHHHHHHHHHhCCCcEEE
Q 048725 592 MLKFAEACGIPGAQVT-----RKADLRAAIQTMLDTPGPYLL 628 (661)
Q Consensus 592 ~~~~A~a~G~~~~~v~-----~~~el~~al~~a~~~~gp~lI 628 (661)
....|+.+|++...+. +.+++++.+.+.++.-+|-+|
T Consensus 45 v~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dli 86 (212)
T 3av3_A 45 VIERAARENVPAFVFSPKDYPSKAAFESEILRELKGRQIDWI 86 (212)
T ss_dssp HHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHcCCCEEEeCcccccchhhhHHHHHHHHHhcCCCEE
Confidence 3456777787776542 344555555555555555544
No 184
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=23.74 E-value=1.2e+02 Score=28.45 Aligned_cols=46 Identities=26% Similarity=0.224 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHh-C---CCcEEEEcCCccc-hHHHHHHHHHHhCCCeee
Q 048725 276 SEVHLEQIVRLISE-S---KKPVLYVGGGCLN-SSEELRKFVELTGIPVAS 321 (661)
Q Consensus 276 ~~~~l~~~~~~L~~-A---krPvIv~G~g~~~-a~~~l~~lae~lg~PV~t 321 (661)
+.+.+++++++|.+ + .+-|+++|.|... ....+.....++|.++..
T Consensus 40 d~~~i~~~~~~i~~~a~~~a~~I~i~G~G~S~~~A~~~~~~l~~lg~~~~~ 90 (220)
T 3etn_A 40 VTDAYEKAVELIVEQIHRKKGKLVTSGMGKAGQIAMNIATTFCSTGIPSVF 90 (220)
T ss_dssp CCTHHHHHHHHHHHHTTTTCCCEEEECSHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHHHHHhHhhccCCEEEEEEecHHHHHHHHHHHHHHhcCCcEEE
Confidence 45678999999988 2 4568888987653 344455555578888765
No 185
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=23.48 E-value=76 Score=28.61 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCccc-hHHHHHHHHHHhCCCeee
Q 048725 276 SEVHLEQIVRLISESKKPVLYVGGGCLN-SSEELRKFVELTGIPVAS 321 (661)
Q Consensus 276 ~~~~l~~~~~~L~~AkrPvIv~G~g~~~-a~~~l~~lae~lg~PV~t 321 (661)
+. .+++++++|.++++-|+++|.|... ....+.....++|.++..
T Consensus 35 ~~-~i~~~~~~i~~a~~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~ 80 (183)
T 2xhz_A 35 NQ-NFTLACEKMFWCKGKVVVMGMGASGHIGRKMAATFASTGTPSFF 80 (183)
T ss_dssp SH-HHHHHHHHHHTCSSCEEEEECHHHHHHHHHHHHHHHTTTCCEEE
T ss_pred HH-HHHHHHHHHHhCCCeEEEEeecHHHHHHHHHHHHHHhcCceEEE
Confidence 45 8999999999998689999987643 333444444456777643
No 186
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=23.35 E-value=2.4e+02 Score=24.74 Aligned_cols=123 Identities=15% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHhC-CCcEEEEcCCccchHHHHHHHHH--HhCCCeeecCCCCCCCCCCCCCCCcccCCCCcHHHHHhhhcCC
Q 048725 280 LEQIVRLISES-KKPVLYVGGGCLNSSEELRKFVE--LTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSD 356 (661)
Q Consensus 280 l~~~~~~L~~A-krPvIv~G~g~~~a~~~l~~lae--~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l~~aD 356 (661)
++.+++.+... +--++++|.+... +++.++++ .+++ +-.+-..|.........++..||
T Consensus 38 ~~~li~a~~~l~~~~l~i~G~~~~~--~~l~~~~~~~~~~l----------------~~~v~~~g~~~~~e~~~~~~~ad 99 (177)
T 2f9f_A 38 IELQLEVFKKLQDEKLYIVGWFSKG--DHAERYARKIMKIA----------------PDNVKFLGSVSEEELIDLYSRCK 99 (177)
T ss_dssp HHHHHHHHHHCTTSCEEEEBCCCTT--STHHHHHHHHHHHS----------------CTTEEEEESCCHHHHHHHHHHCS
T ss_pred HHHHHHHHHhCCCcEEEEEecCccH--HHHHHHHHhhhccc----------------CCcEEEeCCCCHHHHHHHHHhCC
Q ss_pred EEEEeCCCCCCCcCCcccccCCCCeEEEEcCCch-hhccCCCCcceEeccHHHHHHHHHHHhcCCC
Q 048725 357 LLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSA-EIGKNKQPHVSVCADLKLALKGINRILGGKD 421 (661)
Q Consensus 357 lvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~-~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~ 421 (661)
++| +-+........-++.+.....+|.-+.... ++-......+.+..|...+.+.|.+.+.+..
T Consensus 100 i~v-~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~~~d~~~l~~~i~~l~~~~~ 164 (177)
T 2f9f_A 100 GLL-CTAKDEDFGLTPIEAMASGKPVIAVNEGGFKETVINEKTGYLVNADVNEIIDAMKKVSKNPD 164 (177)
T ss_dssp EEE-ECCSSCCSCHHHHHHHHTTCCEEEESSHHHHHHCCBTTTEEEECSCHHHHHHHHHHHHHCTT
T ss_pred EEE-eCCCcCCCChHHHHHHHcCCcEEEeCCCCHHHHhcCCCccEEeCCCHHHHHHHHHHHHhCHH
No 187
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=22.78 E-value=1.7e+02 Score=29.13 Aligned_cols=58 Identities=10% Similarity=0.115 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCccchHHHHHHHHHHhCCCeeecCCCCCCCCCCCC
Q 048725 277 EVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLGSFPGTDE 334 (661)
Q Consensus 277 ~~~l~~~~~~L~~AkrPvIv~G~g~~~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hp 334 (661)
+..-.++++.|....+.++++|.........+..++++.++|+++.......+....+
T Consensus 60 p~~a~~~a~~li~~~~v~~i~g~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~~~~ 117 (353)
T 4gnr_A 60 TAEAASVTTNLVTQSKVSAVVGPATSGATAAAVANATKAGVPLISPSATQDGLTKGQD 117 (353)
T ss_dssp HHHHHHHHHHHHHTSCCSEEECCCSHHHHHHHHHHHHHTTCCEEESSCCCTTTTTTCT
T ss_pred HHHHHHHHHHHHhhCCceEEeccccCcccceehhhhhccCcceEeecccccccccCCc
Confidence 3333344444545667788888877777788899999999999986554444433333
No 188
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=22.40 E-value=87 Score=29.70 Aligned_cols=34 Identities=18% Similarity=0.443 Sum_probs=20.1
Q ss_pred CcEEEEECCcccccChHHHHHHHHcC-CC--eEEEEEeCC
Q 048725 521 AIIVDIDGDGSFIMNVQELATIKVEK-LP--IKILLLNNQ 557 (661)
Q Consensus 521 ~~vv~i~GDGsf~~~~~eL~ta~~~~-lp--v~ivV~NN~ 557 (661)
|.+|.+.|-|+ +++.|..+.+.+ ++ +..||-|+.
T Consensus 4 riavl~Sg~Gs---nl~ali~~~~~~~l~~eI~~Visn~~ 40 (211)
T 3p9x_A 4 RVAIFASGSGT---NAEAIIQSQKAGQLPCEVALLITDKP 40 (211)
T ss_dssp EEEEECCTTCH---HHHHHHHHHHTTCCSSEEEEEEESCS
T ss_pred EEEEEEeCCch---HHHHHHHHHHcCCCCcEEEEEEECCC
Confidence 34566677664 577777666543 43 555666553
No 189
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=21.94 E-value=2.3e+02 Score=25.29 Aligned_cols=92 Identities=22% Similarity=0.128 Sum_probs=51.2
Q ss_pred HHHHHHHHHHCCCCEEEeccCCCcHHHHHH----HHcCCCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchh-hHH
Q 048725 91 ADILVEALERQGVTDVFAYPGGASMEIHQA----LTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPG-ATN 165 (661)
Q Consensus 91 ad~lv~~L~~~GV~~vFg~PG~~~~~l~~a----L~~~~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG-~~N 165 (661)
-+.+++.|.+..-=++||+-+ +..+... |.+. ++..+........ +..-....+ +--++++-|-.| ..+
T Consensus 29 l~~~~~~i~~a~~I~i~G~G~--S~~~a~~~~~~l~~~-g~~~~~~~~~~~~--~~~~~~~~~-~~d~~i~iS~sG~t~~ 102 (187)
T 3sho_A 29 IEAAVEAICRADHVIVVGMGF--SAAVAVFLGHGLNSL-GIRTTVLTEGGST--LTITLANLR-PTDLMIGVSVWRYLRD 102 (187)
T ss_dssp HHHHHHHHHHCSEEEEECCGG--GHHHHHHHHHHHHHT-TCCEEEECCCTHH--HHHHHHTCC-TTEEEEEECCSSCCHH
T ss_pred HHHHHHHHHhCCEEEEEecCc--hHHHHHHHHHHHHhc-CCCEEEecCCchh--HHHHHhcCC-CCCEEEEEeCCCCCHH
Confidence 456788888876545555544 4444443 3333 3444443311111 111122333 334444555555 566
Q ss_pred HHHHHHHhhhCCCcEEEEecCCC
Q 048725 166 LVSGLADALLDSVPLVAITGQVP 188 (661)
Q Consensus 166 ~l~gl~~A~~~~iPll~ItG~~p 188 (661)
.+..+-.|...+.++|.||+...
T Consensus 103 ~~~~~~~ak~~g~~vi~IT~~~~ 125 (187)
T 3sho_A 103 TVAALAGAAERGVPTMALTDSSV 125 (187)
T ss_dssp HHHHHHHHHHTTCCEEEEESCTT
T ss_pred HHHHHHHHHHCCCCEEEEeCCCC
Confidence 77778888899999999998554
No 190
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=21.91 E-value=1.5e+02 Score=26.52 Aligned_cols=46 Identities=13% Similarity=0.095 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCcc-chHHHHHHHHHHhCCCeeec
Q 048725 276 SEVHLEQIVRLISESKKPVLYVGGGCL-NSSEELRKFVELTGIPVAST 322 (661)
Q Consensus 276 ~~~~l~~~~~~L~~AkrPvIv~G~g~~-~a~~~l~~lae~lg~PV~tt 322 (661)
+.+.+++++++|.+++ -|+++|.|.. .....+.....++|.++...
T Consensus 26 ~~~~i~~~~~~i~~a~-~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~ 72 (180)
T 1jeo_A 26 WKNKLDSLIDRIIKAK-KIFIFGVGRSGYIGRCFAMRLMHLGFKSYFV 72 (180)
T ss_dssp HHHHHHHHHHHHHHCS-SEEEECCHHHHHHHHHHHHHHHHTTCCEEET
T ss_pred CHHHHHHHHHHHHhCC-EEEEEeecHHHHHHHHHHHHHHHcCCeEEEe
Confidence 4577999999999987 5788888764 33445555555788887653
No 191
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=21.75 E-value=53 Score=29.76 Aligned_cols=70 Identities=17% Similarity=0.095 Sum_probs=40.7
Q ss_pred cccCCCCCCCcHHHHHHHHHHH-CCCC----EEEeccCCCcHHHH-HHHHcCCCCeE---E-------ccCChhHHHHHH
Q 048725 79 SSRFAPDQPRKGADILVEALER-QGVT----DVFAYPGGASMEIH-QALTRSNNIRN---V-------LPRHEQGGIFAA 142 (661)
Q Consensus 79 ~~~~~~~~~~~gad~lv~~L~~-~GV~----~vFg~PG~~~~~l~-~aL~~~~~i~~---v-------~~~hE~~A~~~A 142 (661)
++||...-.-.--+--.+.|++ +|++ .++-+||...+|+. +.|.++....- . ..++|-.+...+
T Consensus 24 ~arfn~~I~~~Ll~ga~~~l~~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~Va~~v~ 103 (159)
T 1kz1_A 24 HARGNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASIARNTYDAVIGIGVLIKGSTMHFEYISEAVV 103 (159)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHHHCCCGGGEEEEECSSGGGHHHHHHHHHHHSCCSEEEEEEEEECCSSSHHHHHHHHHH
T ss_pred EeeCcHHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEecccccCCchHHHHHHHHHH
Confidence 3666554111222334578888 8986 59999999999997 44443222111 1 122566666666
Q ss_pred HHHHHH
Q 048725 143 EGYARS 148 (661)
Q Consensus 143 ~Gyar~ 148 (661)
.|..++
T Consensus 104 ~Gl~~v 109 (159)
T 1kz1_A 104 HGLMRV 109 (159)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666555
No 192
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=21.73 E-value=2e+02 Score=25.82 Aligned_cols=45 Identities=16% Similarity=0.190 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCccc-hHHHHHHHHHHhCCCeee
Q 048725 276 SEVHLEQIVRLISESKKPVLYVGGGCLN-SSEELRKFVELTGIPVAS 321 (661)
Q Consensus 276 ~~~~l~~~~~~L~~AkrPvIv~G~g~~~-a~~~l~~lae~lg~PV~t 321 (661)
+.+.+++++++|.+++| |+++|.|... ....+.....++|.++..
T Consensus 23 ~~~~i~~~~~~i~~a~~-I~i~G~G~S~~~A~~~~~~l~~~g~~~~~ 68 (186)
T 1m3s_A 23 SNEEADQLADHILSSHQ-IFTAGAGRSGLMAKSFAMRLMHMGFNAHI 68 (186)
T ss_dssp CHHHHHHHHHHHHHCSC-EEEECSHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHHHHHcCCe-EEEEecCHHHHHHHHHHHHHHhcCCeEEE
Confidence 67889999999999874 7788887643 344455445678888764
No 193
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=21.72 E-value=2.3e+02 Score=25.17 Aligned_cols=122 Identities=16% Similarity=0.129 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHH--hC--CCcEEEEcCCccchHHHHHHHHHHhCCCeeecCCCCCCCCCCCCCCCcccCCCCcHHHHHhh
Q 048725 277 EVHLEQIVRLIS--ES--KKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAV 352 (661)
Q Consensus 277 ~~~l~~~~~~L~--~A--krPvIv~G~g~~~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hpl~lg~~G~~g~~~a~~~l 352 (661)
...+-+++..+. +. +--++++|.+.....+++.++++.++ .|.-. .|.........++
T Consensus 52 ~~~li~a~~~l~~~~~~~~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~-----------------~g~~~~~~~~~~~ 113 (200)
T 2bfw_A 52 VDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHG-NVKVI-----------------TEMLSREFVRELY 113 (200)
T ss_dssp HHHHHHHHHHHTTSGGGGGEEEEEECCBCHHHHHHHHHHHHHCT-TEEEE-----------------CSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCeEEEEECCCChHHHHHHHHHHHhcC-CEEEE-----------------eccCCHHHHHHHH
Confidence 344445555553 21 12478888765445678888998887 33210 1233334566788
Q ss_pred hcCCEEEEeCCCCCCCcCCcccccCCCCeEEEEcCCch-hhccCCCCcceE-eccHHHHHHHHHHHhc
Q 048725 353 DKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSA-EIGKNKQPHVSV-CADLKLALKGINRILG 418 (661)
Q Consensus 353 ~~aDlvL~vG~~~~~~~t~~~~~~~~~~~vi~Id~d~~-~i~~~~~~~~~i-~~D~~~~L~~L~~~l~ 418 (661)
..||++|.- +........-++.+.....+|.-+.... ++- .....+.+ ..|...+.+.|.+.+.
T Consensus 114 ~~ad~~l~p-s~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 114 GSVDFVIIP-SYFEPFGLVALEAMCLGAIPIASAVGGLRDII-TNETGILVKAGDPGELANAILKALE 179 (200)
T ss_dssp TTCSEEEEC-CSCCSSCHHHHHHHHTTCEEEEESCHHHHHHC-CTTTCEEECTTCHHHHHHHHHHHHH
T ss_pred HHCCEEEEC-CCCCCccHHHHHHHHCCCCEEEeCCCChHHHc-CCCceEEecCCCHHHHHHHHHHHHh
Confidence 999998874 2222222222345555666666654321 111 11222222 2477777777776654
No 194
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=21.65 E-value=4.8e+02 Score=24.61 Aligned_cols=89 Identities=9% Similarity=-0.010 Sum_probs=53.8
Q ss_pred CcHHHHHHHHHHH-C-CCC-----EEEeccCC--------CcHHHHHHHHcCCCCeEEc---c-CChhHHHHHHHHHHHH
Q 048725 88 RKGADILVEALER-Q-GVT-----DVFAYPGG--------ASMEIHQALTRSNNIRNVL---P-RHEQGGIFAAEGYARS 148 (661)
Q Consensus 88 ~~gad~lv~~L~~-~-GV~-----~vFg~PG~--------~~~~l~~aL~~~~~i~~v~---~-~hE~~A~~~A~Gyar~ 148 (661)
..++..+++.|.+ . |-+ +|..+-|. +...+.+++.+.++++++. . .++..+.-++.-+-+.
T Consensus 113 ~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~ 192 (293)
T 3l6u_A 113 QMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTTNERHRGFLKGIENEPTLSIVDSVSGNYDPVTSERVMRQVIDS 192 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHHHHHHHHHHHHHTTCTTEEEEEEEECTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchHHHHHHHHHHHHHhCCCcEEeeeccCCCCHHHHHHHHHHHHHh
Confidence 3467777777777 4 666 65555443 2345667777765666542 2 2333343444444444
Q ss_pred hCCcEEEEEccchhhHHHHHHHHHhhhC
Q 048725 149 SGKPGICIATSGPGATNLVSGLADALLD 176 (661)
Q Consensus 149 tg~~gv~~~tsGpG~~N~l~gl~~A~~~ 176 (661)
..++-++++.+..-+..++.++.++-..
T Consensus 193 ~~~~~ai~~~~d~~a~g~~~al~~~g~~ 220 (293)
T 3l6u_A 193 GIPFDAVYCHNDDIAMGVLEALKKAKIS 220 (293)
T ss_dssp TCCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCCCEEEECCchHHHHHHHHHHhCCCC
Confidence 4678888888887777777777776554
No 195
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=21.51 E-value=92 Score=28.15 Aligned_cols=45 Identities=22% Similarity=0.197 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCccc-hHHHHHHHHHHhCCCeee
Q 048725 276 SEVHLEQIVRLISESKKPVLYVGGGCLN-SSEELRKFVELTGIPVAS 321 (661)
Q Consensus 276 ~~~~l~~~~~~L~~AkrPvIv~G~g~~~-a~~~l~~lae~lg~PV~t 321 (661)
+.+.+++++++|.+++ -|+++|.|... ....+.....++|.++..
T Consensus 25 ~~~~l~~~~~~i~~a~-~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~ 70 (187)
T 3sho_A 25 QPEAIEAAVEAICRAD-HVIVVGMGFSAAVAVFLGHGLNSLGIRTTV 70 (187)
T ss_dssp CHHHHHHHHHHHHHCS-EEEEECCGGGHHHHHHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHHHHHhCC-EEEEEecCchHHHHHHHHHHHHhcCCCEEE
Confidence 6788999999999986 58888887653 445555555678888865
No 196
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=20.84 E-value=34 Score=34.25 Aligned_cols=35 Identities=9% Similarity=0.065 Sum_probs=21.9
Q ss_pred CCcEEEEECCcccccChHHHHHHHHcC-CC--eEEEEEeCC
Q 048725 520 DAIIVDIDGDGSFIMNVQELATIKVEK-LP--IKILLLNNQ 557 (661)
Q Consensus 520 ~~~vv~i~GDGsf~~~~~eL~ta~~~~-lp--v~ivV~NN~ 557 (661)
.|.+|.+.|-| .+++.|..+.+.+ +| +..||-|+.
T Consensus 89 ~ri~vl~Sg~g---~nl~~ll~~~~~g~l~~~i~~Visn~~ 126 (287)
T 3nrb_A 89 KKVVIMVSKFD---HCLGDLLYRHRLGELDMEVVGIISNHP 126 (287)
T ss_dssp CEEEEEECSCC---HHHHHHHHHHHHTSSCCEEEEEEESSC
T ss_pred cEEEEEEeCCC---cCHHHHHHHHHCCCCCeEEEEEEeCCh
Confidence 34566777776 4677777665543 44 666666665
No 197
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=20.82 E-value=1.9e+02 Score=28.65 Aligned_cols=81 Identities=15% Similarity=0.167 Sum_probs=47.0
Q ss_pred CcHHHHHHHHHHHC--CCCEEEeccCCCc-HHHHHHHHcC--CCCeEEccCChhHHHHHHHHHHHHhCCcEEEEEccchh
Q 048725 88 RKGADILVEALERQ--GVTDVFAYPGGAS-MEIHQALTRS--NNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPG 162 (661)
Q Consensus 88 ~~gad~lv~~L~~~--GV~~vFg~PG~~~-~~l~~aL~~~--~~i~~v~~~hE~~A~~~A~Gyar~tg~~gv~~~tsGpG 162 (661)
.++-+.+++++... +++.+ -+-|... ..+.+.+.+. +.+.+....+|.. .+ |+. --+++.+||
T Consensus 196 ~k~~~~li~a~~~l~~~~~~l-~i~G~~~~~~l~~~~~~~~~~~v~~~g~~~~~~-~~----~~~----ad~~v~~sg-- 263 (364)
T 1f0k_A 196 RILNQTMPQVAAKLGDSVTIW-HQSGKGSQQSVEQAYAEAGQPQHKVTEFIDDMA-AA----YAW----ADVVVCRSG-- 263 (364)
T ss_dssp HHHHHHHHHHHHHHGGGEEEE-EECCTTCHHHHHHHHHHTTCTTSEEESCCSCHH-HH----HHH----CSEEEECCC--
T ss_pred HHHHHHHHHHHHHhcCCcEEE-EEcCCchHHHHHHHHhhcCCCceEEecchhhHH-HH----HHh----CCEEEECCc--
Confidence 46778888888765 34422 2334333 3333333332 2477877774432 22 222 135566776
Q ss_pred hHHHHHHHHHhhhCCCcEEEEe
Q 048725 163 ATNLVSGLADALLDSVPLVAIT 184 (661)
Q Consensus 163 ~~N~l~gl~~A~~~~iPll~It 184 (661)
-+.+.||...++|+|+.-
T Consensus 264 ----~~~~~EAma~G~Pvi~~~ 281 (364)
T 1f0k_A 264 ----ALTVSEIAAAGLPALFVP 281 (364)
T ss_dssp ----HHHHHHHHHHTCCEEECC
T ss_pred ----hHHHHHHHHhCCCEEEee
Confidence 456899999999999873
No 198
>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1
Probab=20.41 E-value=71 Score=32.33 Aligned_cols=56 Identities=18% Similarity=0.159 Sum_probs=38.5
Q ss_pred CCCc-EEEEcCChhHHHHHhhcccc-CCCeEEecCCCCcccchHHHHHHhhhhCCCCcEEEEECCcccc
Q 048725 467 NGEA-IISTGVGQHQMWAAQFYKYR-RPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFI 533 (661)
Q Consensus 467 ~~d~-iv~~d~G~~~~~~~~~~~~~-~p~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDGsf~ 533 (661)
.+.- ++++..|+ ..++. .|-+|+++...|-||+++.-+ +...+..|+.+.|.++..
T Consensus 35 ~gk~~VLITaGgT-------~EpID~DpVRfItN~SSGkmG~aiAe~----~~~~Ga~V~lv~g~~sl~ 92 (313)
T 1p9o_A 35 QGRRVVLVTSGGT-------KVPLEARPVRFLDNFSSGRRGATSAEA----FLAAGYGVLFLYRARSAF 92 (313)
T ss_dssp TTCCEEEEEESBC-------EEESSSSCSEEEEECCCCHHHHHHHHH----HHHTTCEEEEEEETTSCC
T ss_pred cCCeEEEEeCCCc-------ccccCCCceeEecCCCCcHHHHHHHHH----HHHCCCEEEEEecCCCcC
Confidence 4444 66666664 23444 689999999888888766543 333477899999998854
No 199
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=20.08 E-value=1.1e+02 Score=28.97 Aligned_cols=36 Identities=11% Similarity=0.196 Sum_probs=21.1
Q ss_pred HHHHhHcCCCEeeeC-----CHHHHHHHHHHHHhCCCcEEE
Q 048725 593 LKFAEACGIPGAQVT-----RKADLRAAIQTMLDTPGPYLL 628 (661)
Q Consensus 593 ~~~A~a~G~~~~~v~-----~~~el~~al~~a~~~~gp~lI 628 (661)
...|+.+|++...++ +.+++.+.+.+.++.-+|-+|
T Consensus 44 ~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dli 84 (216)
T 2ywr_A 44 IERCKKHNVECKVIQRKEFPSKKEFEERMALELKKKGVELV 84 (216)
T ss_dssp HHHHHHHTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHcCCCEEEeCcccccchhhhhHHHHHHHHhcCCCEE
Confidence 456777788777542 344455555555555556554
Done!