RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 048725
(661 letters)
>gnl|CDD|215261 PLN02470, PLN02470, acetolactate synthase.
Length = 585
Score = 1231 bits (3188), Expect = 0.0
Identities = 493/585 (84%), Positives = 543/585 (92%), Gaps = 1/585 (0%)
Query: 77 NFSSRFAPDQPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQ 136
F SRFAPD+PRKGADILVEALER+GV VFAYPGGASMEIHQALTRSN IRNVL RHEQ
Sbjct: 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGASMEIHQALTRSNCIRNVLCRHEQ 61
Query: 137 GGIFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDA 196
G +FAAEGYA++SGK G+CIATSGPGATNLV+GLADALLDSVPLVAITGQVPRRMIGTDA
Sbjct: 62 GEVFAAEGYAKASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAITGQVPRRMIGTDA 121
Query: 197 FQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVP 256
FQETPIVEVTRSITKHNYLV+DV+DIPR++REAF LA+SGRPGPVL+D+PKDIQQQLAVP
Sbjct: 122 FQETPIVEVTRSITKHNYLVMDVEDIPRVIREAFFLASSGRPGPVLVDIPKDIQQQLAVP 181
Query: 257 NWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTG 316
NWNQP+KLPGY+SRLPK P + LEQIVRLISESK+PV+YVGGGCLNSSEELR+FVELTG
Sbjct: 182 NWNQPMKLPGYLSRLPKPPEKSQLEQIVRLISESKRPVVYVGGGCLNSSEELREFVELTG 241
Query: 317 IPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAF 376
IPVASTLMGLG+FP +DELSLQMLGMHGTVYANYAVD +DLLLAFGVRFDDRVTGKLEAF
Sbjct: 242 IPVASTLMGLGAFPASDELSLQMLGMHGTVYANYAVDSADLLLAFGVRFDDRVTGKLEAF 301
Query: 377 ASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELD 436
ASRA IVHIDID AEIGKNKQPHVSVCAD+KLAL+G+N++L + A+ R DFSAWR ELD
Sbjct: 302 ASRASIVHIDIDPAEIGKNKQPHVSVCADVKLALQGLNKLLEERKAK-RPDFSAWRAELD 360
Query: 437 EQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWL 496
EQK K+PLS+ TF ++IPPQYAIQVLDELT+G AIISTGVGQHQMWAAQ+YKY+ PR+WL
Sbjct: 361 EQKEKFPLSYPTFGDAIPPQYAIQVLDELTDGNAIISTGVGQHQMWAAQWYKYKEPRRWL 420
Query: 497 TSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNN 556
TSGGLGAMGFGLPAAIGAA ANPDAI+VDIDGDGSFIMN+QELATI VE LP+KI++LNN
Sbjct: 421 TSGGLGAMGFGLPAAIGAAAANPDAIVVDIDGDGSFIMNIQELATIHVENLPVKIMVLNN 480
Query: 557 QHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAI 616
QHLGMV+QWEDRFYKANRAHTYLGDP E+EIFP+ LKFAE C IP A+VTRK+DLR AI
Sbjct: 481 QHLGMVVQWEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVTRKSDLREAI 540
Query: 617 QTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFKDVITEGDGRTQY 661
Q MLDTPGPYLLDVI PHQEHVLPMIP GG FKD+ITEGDGRT+Y
Sbjct: 541 QKMLDTPGPYLLDVIVPHQEHVLPMIPGGGTFKDIITEGDGRTKY 585
>gnl|CDD|232833 TIGR00118, acolac_lg, acetolactate synthase, large subunit,
biosynthetic type. Two groups of proteins form
acetolactate from two molecules of pyruvate. The type of
acetolactate synthase described in this model also
catalyzes the formation of acetohydroxybutyrate from
pyruvate and 2-oxobutyrate, an early step in the
branched chain amino acid biosynthesis; it is therefore
also termed acetohydroxyacid synthase. In bacteria, this
catalytic chain is associated with a smaller regulatory
chain in an alpha2/beta2 heterotetramer. Acetolactate
synthase is a thiamine pyrophosphate enzyme. In this
type, FAD and Mg++ are also found. Several isozymes of
this enzyme are found in E. coli K12, one of which
contains a frameshift in the large subunit gene and is
not expressed [Amino acid biosynthesis, Pyruvate
family].
Length = 558
Score = 689 bits (1779), Expect = 0.0
Identities = 277/568 (48%), Positives = 382/568 (67%), Gaps = 14/568 (2%)
Query: 89 KGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARS 148
GA+ ++E+L+ +GV VF YPGGA + I+ AL + I ++L RHEQG AA+GYAR+
Sbjct: 2 SGAEAIIESLKDEGVKTVFGYPGGAILPIYDALYNDSGIEHILVRHEQGAAHAADGYARA 61
Query: 149 SGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRS 208
SGK G+ + TSGPGATNLV+G+A A +DS+P+V TGQVP +IG+DAFQE I+ +T
Sbjct: 62 SGKVGVVLVTSGPGATNLVTGIATAYMDSIPMVVFTGQVPTSLIGSDAFQEADILGITMP 121
Query: 209 ITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYM 268
ITKH++ V +DIPRI++EAF +AT+GRPGPVL+D+PKD+ + + + LPGY
Sbjct: 122 ITKHSFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKDVTTAEIEYPYPEKVNLPGY- 180
Query: 269 SRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTLMGL 326
R + + +++ LI+ +KKPV+ VGGG + +SEEL++ E IPV +TLMGL
Sbjct: 181 -RPTVKGHPLQIKKAAELINLAKKPVILVGGGVIIAGASEELKELAERIQIPVTTTLMGL 239
Query: 327 GSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHID 386
GSFP LSL MLGMHGT AN AV + DL++A G RFDDRVTG L FA AKI+HID
Sbjct: 240 GSFPEDHPLSLGMLGMHGTKTANLAVHECDLIIAVGARFDDRVTGNLAKFAPNAKIIHID 299
Query: 387 IDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSF 446
ID AEIGKN + + + D + L+ +L SAW E++++ K +YPL
Sbjct: 300 IDPAEIGKNVRVDIPIVGDARNVLE---ELLKKLFELKERKESAWLEQINKWKKEYPLKM 356
Query: 447 KTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGF 506
EE I PQ I+ L +T EAI++T VGQHQMWAAQFY +R+PR+++TSGGLG MGF
Sbjct: 357 DYTEEGIKPQQVIEELSRVTKDEAIVTTDVGQHQMWAAQFYPFRKPRRFITSGGLGTMGF 416
Query: 507 GLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWE 566
GLPAAIGA VA P++ ++ I GDGSF MN+QEL+T +P+KIL+LNN++LGMV QW+
Sbjct: 417 GLPAAIGAKVAKPESTVICITGDGSFQMNLQELSTAVQYDIPVKILILNNRYLGMVRQWQ 476
Query: 567 DRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPY 626
+ FY+ +HT++G P+ +K AEA GI G ++ + +L ++ L + P
Sbjct: 477 ELFYEERYSHTHMGS-------LPDFVKLAEAYGIKGIRIEKPEELDEKLKEALSSNEPV 529
Query: 627 LLDVIFPHQEHVLPMIPSGGAFKDVITE 654
LLDV+ E+VLPM+ GG ++I E
Sbjct: 530 LLDVVVDKPENVLPMVAPGGGLDEMIGE 557
>gnl|CDD|181601 PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit;
Reviewed.
Length = 548
Score = 685 bits (1770), Expect = 0.0
Identities = 262/569 (46%), Positives = 360/569 (63%), Gaps = 25/569 (4%)
Query: 88 RKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYAR 147
GA +V AL QGV VF YPGGA M ++ AL + ++L RHEQG AA GYAR
Sbjct: 1 MNGAQWVVHALRAQGVDTVFGYPGGAIMPVYDALYDGG-VEHLLCRHEQGAAMAAIGYAR 59
Query: 148 SSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTR 207
++GK G+CIATSGPGATNL++GLADALLDSVP+VAITGQV +IGTDAFQE ++ ++
Sbjct: 60 ATGKVGVCIATSGPGATNLITGLADALLDSVPVVAITGQVSSPLIGTDAFQEIDVLGLSL 119
Query: 208 SITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGY 267
+ TKH++LV ++++P I+ EAF +A+SGRPGPVL+D+PKDIQ ++
Sbjct: 120 ACTKHSFLVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKDIQLAEG------ELEPHLT 173
Query: 268 MSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGC--LNSSEELRKFVELTGIPVASTLMG 325
LEQ L++++KKPVLYVGGG + LR+F+ TG+P +TL G
Sbjct: 174 TVENEPAFPAAELEQARALLAQAKKPVLYVGGGVGMAGAVPALREFLAATGMPAVATLKG 233
Query: 326 LGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHI 385
LG+ L MLGMHGT AN AV + DLL+A G RFDDRVTGKL FA AK++H+
Sbjct: 234 LGAVEADHPYYLGMLGMHGTKAANLAVQECDLLIAVGARFDDRVTGKLNTFAPHAKVIHL 293
Query: 386 DIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLS 445
DID AEI K +Q HV++ DL L + + L + AWR+ + + ++
Sbjct: 294 DIDPAEINKLRQAHVALQGDLNALLPALQQPL---------NIDAWRQHCAQLRAEHAWR 344
Query: 446 FKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMG 505
+ E+I ++ L + + +++T VGQHQMW AQ ++ RP ++TS GLG MG
Sbjct: 345 YDHPGEAIYAPALLKQLSDRKPADTVVTTDVGQHQMWVAQHMRFTRPENFITSSGLGTMG 404
Query: 506 FGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQW 565
FGLPAAIGA VA PD ++ + GDGSF+MNVQEL TIK ++LP+KI+LL+NQ LGMV QW
Sbjct: 405 FGLPAAIGAQVARPDDTVICVSGDGSFMMNVQELGTIKRKQLPVKIVLLDNQRLGMVRQW 464
Query: 566 EDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGP 625
+ F+ + T L D P+ + A A GIPG +TRK + AA+ T+L++ GP
Sbjct: 465 QQLFFDERYSETDLSDN-------PDFVMLASAFGIPGQTITRKDQVEAALDTLLNSEGP 517
Query: 626 YLLDVIFPHQEHVLPMIPSGGAFKDVITE 654
YLL V E+V P++P G + +++ +
Sbjct: 518 YLLHVSIDELENVWPLVPPGASNSEMLEK 546
>gnl|CDD|223107 COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes
[acetolactate synthase, pyruvate dehydrogenase
(cytochrome), glyoxylate carboligase, phosphonopyruvate
decarboxylase] [Amino acid transport and metabolism /
Coenzyme metabolism].
Length = 550
Score = 677 bits (1749), Expect = 0.0
Identities = 273/567 (48%), Positives = 359/567 (63%), Gaps = 20/567 (3%)
Query: 88 RKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYAR 147
GA+ LVEALE GV VF PGG+ + ++ AL S IR++L RHEQG FAA+GYAR
Sbjct: 2 MTGAEALVEALEANGVDTVFGIPGGSILPLYDALYDSG-IRHILVRHEQGAAFAADGYAR 60
Query: 148 SSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTR 207
++GKPG+C+ TSGPGATNL++GLADA +DSVPL+AITGQVP +IGTDAFQE V + R
Sbjct: 61 ATGKPGVCLVTSGPGATNLLTGLADAYMDSVPLLAITGQVPTSLIGTDAFQEVDQVGLFR 120
Query: 208 SITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGY 267
ITK+N+ V +DIP +V AF +A SGRPGPV++D+PKD+ A +P LP Y
Sbjct: 121 PITKYNFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDVLAAEAEEPGPEPAILPPY 180
Query: 268 MSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNS--SEELRKFVELTGIPVASTLMG 325
P P + + L++E+K+PV+ GGG + SEELR+ E G PV +TLMG
Sbjct: 181 R---PAPPPPEAIRKAAELLAEAKRPVILAGGGVRRAGASEELRELAEKLGAPVVTTLMG 237
Query: 326 LGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHI 385
G+ P LSL MLGMHGT AN A++++DLLLA G RFDDRVTG FA A I+HI
Sbjct: 238 KGAVPEDHPLSLGMLGMHGTKAANEALEEADLLLAVGARFDDRVTG-YSGFAPPAAIIHI 296
Query: 386 DIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLS 445
DID AEIGKN V + D K L+ + L + A + R + ++
Sbjct: 297 DIDPAEIGKNYPVDVPIVGDAKATLEALLEELKPERAAWLEELLEARAAYRDLALEEL-- 354
Query: 446 FKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMG 505
++ I PQY I+VL EL +AI+ T VGQHQMWAA+++ + RPR++LTSGGLG MG
Sbjct: 355 ---ADDGIKPQYVIKVLRELLPDDAIVVTDVGQHQMWAARYFDFYRPRRFLTSGGLGTMG 411
Query: 506 FGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQW 565
FGLPAAIGA +A PD +V I GDG F+MN QEL T LP+KI++LNN GMV QW
Sbjct: 412 FGLPAAIGAKLAAPDRKVVAIAGDGGFMMNGQELETAVRYGLPVKIVVLNNGGYGMVRQW 471
Query: 566 EDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGP 625
++ FY + T LG+ P+ +K AEA G G +V +L A++ L + GP
Sbjct: 472 QELFYGGRYSGTDLGN--------PDFVKLAEAYGAKGIRVETPEELEEALEEALASDGP 523
Query: 626 YLLDVIFPHQEHVLPMIPSGGAFKDVI 652
L+DV+ +E V PM+P G A ++
Sbjct: 524 VLIDVVVDPEEAVPPMVPLGKANGEMK 550
>gnl|CDD|236098 PRK07789, PRK07789, acetolactate synthase 1 catalytic subunit;
Validated.
Length = 612
Score = 659 bits (1702), Expect = 0.0
Identities = 282/598 (47%), Positives = 378/598 (63%), Gaps = 15/598 (2%)
Query: 53 SSLPKPSAASSTTIAQTVITSPETNFSSRFAPDQPRKGADILVEALERQGVTDVFAYPGG 112
S P P+AA+S + AP++ GA +V +LE GV VF PGG
Sbjct: 1 PSPPTPAAAASAAPPPAAPAARPR----IVAPER-MTGAQAVVRSLEELGVDVVFGIPGG 55
Query: 113 ASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSGLAD 172
A + ++ L S +R+VL RHEQG AAEGYA+++G+ G+C+ATSGPGATNLV+ +AD
Sbjct: 56 AILPVYDPLFDSTKVRHVLVRHEQGAGHAAEGYAQATGRVGVCMATSGPGATNLVTPIAD 115
Query: 173 ALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLL 232
A +DSVP+VAITGQV R +IGTDAFQE IV +T ITKHN+LV D DDIPR++ EAF +
Sbjct: 116 ANMDSVPVVAITGQVGRGLIGTDAFQEADIVGITMPITKHNFLVTDADDIPRVIAEAFHI 175
Query: 233 ATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKK 292
A++GRPGPVL+D+PKD Q +W + LPGY R +P + + +LI+ +++
Sbjct: 176 ASTGRPGPVLVDIPKDALQAQTTFSWPPRMDLPGY--RPVTKPHGKQIREAAKLIAAARR 233
Query: 293 PVLYVGGGCL--NSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANY 350
PVLYVGGG + +S ELR+ ELTGIPV +TLM G+FP + L M GMHGTV A
Sbjct: 234 PVLYVGGGVIRAEASAELRELAELTGIPVVTTLMARGAFPDSHPQHLGMPGMHGTVAAVA 293
Query: 351 AVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLAL 410
A+ +SDLL+A G RFDDRVTGKL++FA AK++H DID AEIGKN+ V + D+K +
Sbjct: 294 ALQRSDLLIALGARFDDRVTGKLDSFAPDAKVIHADIDPAEIGKNRHADVPIVGDVKEVI 353
Query: 411 KGINRILGGKDAE-GRFDFSAWREELDEQKVKYPLSF-KTFEESIPPQYAIQVLDELTNG 468
+ L + A G+ D +AW LD + YPL + + + S+ PQY I+ L E+
Sbjct: 354 AELIAALRAEHAAGGKPDLTAWWAYLDGWRETYPLGYDEPSDGSLAPQYVIERLGEIAGP 413
Query: 469 EAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDG 528
+AI GVGQHQMWAAQF Y +PR WL SGGLG MG+ +PAA+GA V PD + IDG
Sbjct: 414 DAIYVAGVGQHQMWAAQFIDYEKPRTWLNSGGLGTMGYAVPAAMGAKVGRPDKEVWAIDG 473
Query: 529 DGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEI 588
DG F M QELAT +E +PIK+ L+NN +LGMV QW+ FY+ ++T L S
Sbjct: 474 DGCFQMTNQELATCAIEGIPIKVALINNGNLGMVRQWQTLFYEERYSNTDLHTHSHR--- 530
Query: 589 FPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPG-PYLLDVIFPHQEHVLPMIPSG 645
P+ +K AEA G G + R+ D+ A I+ P ++D + V PM+ +G
Sbjct: 531 IPDFVKLAEAYGCVGLRCEREEDVDAVIEKARAINDRPVVIDFVVGKDAMVWPMVAAG 588
>gnl|CDD|180368 PRK06048, PRK06048, acetolactate synthase 3 catalytic subunit;
Reviewed.
Length = 561
Score = 636 bits (1641), Expect = 0.0
Identities = 272/570 (47%), Positives = 381/570 (66%), Gaps = 25/570 (4%)
Query: 90 GADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS 149
GA +++ LE++GV +F YPGGA + ++ L S+ +R++L RHEQ AA+GYAR++
Sbjct: 10 GARAIIKCLEKEGVEVIFGYPGGAIIPVYDELYDSD-LRHILVRHEQAAAHAADGYARAT 68
Query: 150 GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSI 209
GK G+C+ATSGPGATNLV+G+A A +DSVP+VA+TGQVPR MIG DAFQE I +T I
Sbjct: 69 GKVGVCVATSGPGATNLVTGIATAYMDSVPIVALTGQVPRSMIGNDAFQEADITGITMPI 128
Query: 210 TKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMS 269
TKHNYLV D D+PRI++EAF +A++GRPGPVLID+PKD+ ++ ++L GY
Sbjct: 129 TKHNYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKDVTTAEIDFDYPDKVELRGY-- 186
Query: 270 RLPKEPSEVHLEQIVR---LISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTLM 324
K + + +QI R LI ++++P++Y GGG + N+SEEL + E PV +TLM
Sbjct: 187 ---KPTYKGNPQQIKRAAELIMKAERPIIYAGGGVISSNASEELVELAETIPAPVTTTLM 243
Query: 325 GLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVH 384
G+G+ P LSL MLGMHGT YANYA+ +SDL++A G RFDDRVTGKL +FA AKI+H
Sbjct: 244 GIGAIPTEHPLSLGMLGMHGTKYANYAIQESDLIIAVGARFDDRVTGKLASFAPNAKIIH 303
Query: 385 IDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPL 444
IDID AEI KN + V + D K LK + + + D W +++++ K +YPL
Sbjct: 304 IDIDPAEISKNVKVDVPIVGDAKQVLKSLIKYVQYC------DRKEWLDKINQWKKEYPL 357
Query: 445 SFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAM 504
+K E+ I PQY I+ + EL +AII T VGQHQMWAAQ++KY+ PR ++TSGGLG M
Sbjct: 358 KYKEREDVIKPQYVIEQIYELCP-DAIIVTEVGQHQMWAAQYFKYKYPRTFITSGGLGTM 416
Query: 505 GFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQ 564
G+G PAAIGA V PD ++DI GDGSF MN QELAT +P+ + +LNN +LGMV Q
Sbjct: 417 GYGFPAAIGAKVGKPDKTVIDIAGDGSFQMNSQELATAVQNDIPVIVAILNNGYLGMVRQ 476
Query: 565 WEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPG 624
W++ FY +HT + + +K AEA G G +V + +++R AI+ + +
Sbjct: 477 WQELFYDKRYSHTCIKGS-------VDFVKLAEAYGALGLRVEKPSEVRPAIEEAVASDR 529
Query: 625 PYLLDVIFPHQEHVLPMIPSGGAFKDVITE 654
P ++D I +E+V PM+P+G A +++
Sbjct: 530 PVVIDFIVECEENVSPMVPAGAAINEILDL 559
>gnl|CDD|236014 PRK07418, PRK07418, acetolactate synthase 3 catalytic subunit;
Reviewed.
Length = 616
Score = 636 bits (1643), Expect = 0.0
Identities = 264/584 (45%), Positives = 366/584 (62%), Gaps = 20/584 (3%)
Query: 69 TVITSPETNFSSRFAPDQPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNN-- 126
+ P+ S+ P + GA L+++L+R GV +F YPGGA + I+ L ++
Sbjct: 1 LTSSPPKIGDSTTVTPQR-ATGAYALMDSLKRHGVKHIFGYPGGAILPIYDELYKAEAEG 59
Query: 127 -IRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITG 185
++++L RHEQG AA+GYAR++GK G+C TSGPGATNLV+G+A A +DSVP+V ITG
Sbjct: 60 WLKHILVRHEQGAAHAADGYARATGKVGVCFGTSGPGATNLVTGIATAQMDSVPMVVITG 119
Query: 186 QVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDV 245
QVPR IGTDAFQET I +T I KH+Y+V D D+ RIV EAF +A+SGRPGPVLID+
Sbjct: 120 QVPRPAIGTDAFQETDIFGITLPIVKHSYVVRDPSDMARIVAEAFHIASSGRPGPVLIDI 179
Query: 246 PKDIQQQLA--VPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLN 303
PKD+ Q+ VP +K PGY R + + + ++LI E+++P+LYVGGG ++
Sbjct: 180 PKDVGQEEFDYVPVEPGSVKPPGY--RPTVKGNPRQINAALKLIEEAERPLLYVGGGAIS 237
Query: 304 SS--EELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAF 361
+ EL++ E IPV +TLMG G+F LS+ MLGMHGT YAN+AV + DLL+A
Sbjct: 238 AGAHAELKELAERFQIPVTTTLMGKGAFDEHHPLSVGMLGMHGTAYANFAVTECDLLIAV 297
Query: 362 GVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKD 421
G RFDDRVTGKL+ FASRAK++HIDID AE+GKN++P V + D++ L +
Sbjct: 298 GARFDDRVTGKLDEFASRAKVIHIDIDPAEVGKNRRPDVPIVGDVRKVLVKLLERSLEPT 357
Query: 422 AEGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQM 481
R AW E ++ K YPL +E I PQ + + +L +A +T VGQHQM
Sbjct: 358 TPPR--TQAWLERINRWKQDYPLVVPPYEGEIYPQEVLLAVRDLAP-DAYYTTDVGQHQM 414
Query: 482 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELAT 541
WAAQF + PR+W++S GLG MGFG+PAA+G VA PD ++ I GD SF+MN+QEL T
Sbjct: 415 WAAQFLR-NGPRRWISSAGLGTMGFGMPAAMGVKVALPDEEVICIAGDASFLMNIQELGT 473
Query: 542 IKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGI 601
+ + +K +++NN GMV QW++ FY + S P+ +K AEA G+
Sbjct: 474 LAQYGINVKTVIINNGWQGMVRQWQESFYGERYSA------SNMEPGMPDFVKLAEAFGV 527
Query: 602 PGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSG 645
G ++ + L+ AI L GP L+DV E+ PM+P G
Sbjct: 528 KGMVISERDQLKDAIAEALAHDGPVLIDVHVRRDENCYPMVPPG 571
>gnl|CDD|181458 PRK08527, PRK08527, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 563
Score = 630 bits (1628), Expect = 0.0
Identities = 257/572 (44%), Positives = 356/572 (62%), Gaps = 14/572 (2%)
Query: 89 KGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARS 148
G+ ++ EAL+ +GV VF YPGGA + I+ + + N +++L RHEQ + AA+GYAR+
Sbjct: 4 SGSQMVCEALKEEGVKVVFGYPGGAILNIYDEIYKQNYFKHILTRHEQAAVHAADGYARA 63
Query: 149 SGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRS 208
SGK G+ I TSGPG TN V+GLA A +DS+PLV I+GQVP +IGTDAFQE V ++R
Sbjct: 64 SGKVGVAIVTSGPGFTNAVTGLATAYMDSIPLVLISGQVPNSLIGTDAFQEIDAVGISRP 123
Query: 209 ITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYM 268
KHNYLV ++++PRI++EAF +A SGRPGPV ID+PKD+ L + + I L Y
Sbjct: 124 CVKHNYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKDVTATLGEFEYPKEISLKTYK 183
Query: 269 SRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNS--SEELRKFVELTGIPVASTLMGL 326
+ +++ I E+KKP+ Y+GGG + S SEE+R+ V+ TGIP TLM
Sbjct: 184 PTYKGNSRQ--IKKAAEAIKEAKKPLFYLGGGAILSNASEEIRELVKKTGIPAVETLMAR 241
Query: 327 GSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHID 386
G D L L MLGMHG+ AN A+ + DLL++ G RFDDRVTGKL FA AKI+H+D
Sbjct: 242 GVLRSDDPLLLGMLGMHGSYAANMAMSECDLLISLGARFDDRVTGKLSEFAKHAKIIHVD 301
Query: 387 IDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSF 446
ID + I K + DLK LK + L ++ + WRE L +PLS+
Sbjct: 302 IDPSSISKIVNADYPIVGDLKNVLKEMLEELKEENPT---TYKEWREILKRYNELHPLSY 358
Query: 447 KTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGF 506
+ +E + PQ+ I+ + EL +AIIST VGQHQMW AQFY + PRQ TSGGLG MG+
Sbjct: 359 EDSDEVLKPQWVIERVGELLGDDAIISTDVGQHQMWVAQFYPFNYPRQLATSGGLGTMGY 418
Query: 507 GLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWE 566
GLPAA+GA +A PD ++++ GDGS +MN+QEL T K+P+ ++LNN LGMV QW+
Sbjct: 419 GLPAALGAKLAVPDKVVINFTGDGSILMNIQELMTAVEYKIPVINIILNNNFLGMVRQWQ 478
Query: 567 DRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPY 626
FY+ + T L P+ +K AE+ G G +VT K + A++ L++
Sbjct: 479 TFFYEERYSETDL-------STQPDFVKLAESFGGIGFRVTTKEEFDKALKEALESDKVA 531
Query: 627 LLDVIFPHQEHVLPMIPSGGAFKDVITEGDGR 658
L+DV E+VLPM+P+GGA ++I
Sbjct: 532 LIDVKIDRFENVLPMVPAGGALYNMILPKKKD 563
>gnl|CDD|236076 PRK07710, PRK07710, acetolactate synthase catalytic subunit;
Reviewed.
Length = 571
Score = 627 bits (1620), Expect = 0.0
Identities = 273/558 (48%), Positives = 368/558 (65%), Gaps = 17/558 (3%)
Query: 90 GADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS 149
GA +L+EALE++GV +F YPGGA + ++ AL I ++L RHEQG I AAEGYAR S
Sbjct: 18 GAQMLIEALEKEGVEVIFGYPGGAVLPLYDALYDCG-IPHILTRHEQGAIHAAEGYARIS 76
Query: 150 GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSI 209
GKPG+ IATSGPGATN+V+GLADA++DS+PLV TGQV +IG+DAFQE I+ +T +
Sbjct: 77 GKPGVVIATSGPGATNVVTGLADAMIDSLPLVVFTGQVATSVIGSDAFQEADIMGITMPV 136
Query: 210 TKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMS 269
TKHNY V D+PRI++EAF +AT+GRPGPVLID+PKD+ + ++ + LPGY
Sbjct: 137 TKHNYQVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKDMVVEEGEFCYDVQMDLPGYQP 196
Query: 270 RLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTLMGLG 327
EP+ + + ++V+ +S +KKPV+ G G L +S+EL + E IPV TL+GLG
Sbjct: 197 N--YEPNLLQIRKLVQAVSVAKKPVILAGAGVLHAKASKELTSYAEQQEIPVVHTLLGLG 254
Query: 328 SFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDI 387
FP L L M GMHGT AN A+ + DLL+ G RFDDRVTG L FA A + HIDI
Sbjct: 255 GFPADHPLFLGMAGMHGTYTANMALYECDLLINIGARFDDRVTGNLAYFAKEATVAHIDI 314
Query: 388 DSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFK 447
D AEIGKN + + AD K AL+ + + G K+ + W L K KYPLS+K
Sbjct: 315 DPAEIGKNVPTEIPIVADAKQALQVLLQQEGKKE-----NHHEWLSLLKNWKEKYPLSYK 369
Query: 448 TFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFG 507
ESI PQ AI++L E+T GEAI++T VGQHQMWAAQ+Y ++ P +W+TSGGLG MGFG
Sbjct: 370 RNSESIKPQKAIEMLYEITKGEAIVTTDVGQHQMWAAQYYPFKTPDKWVTSGGLGTMGFG 429
Query: 508 LPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWED 567
LPAAIGA +A PD +V I GDG F M +QEL+ IK LP+K+++LNN+ LGMV QW++
Sbjct: 430 LPAAIGAQLAKPDETVVAIVGDGGFQMTLQELSVIKELSLPVKVVILNNEALGMVRQWQE 489
Query: 568 RFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYL 627
FY +H+ L + P+ +K AEA GI G ++ + + + +Q ++ P +
Sbjct: 490 EFYNQRYSHSLL--SCQ-----PDFVKLAEAYGIKGVRIDDELEAKEQLQHAIELQEPVV 542
Query: 628 LDVIFPHQEHVLPMIPSG 645
+D E V+PM+ G
Sbjct: 543 IDCRVLQSEKVMPMVAPG 560
>gnl|CDD|214363 CHL00099, ilvB, acetohydroxyacid synthase large subunit.
Length = 585
Score = 626 bits (1616), Expect = 0.0
Identities = 271/571 (47%), Positives = 367/571 (64%), Gaps = 30/571 (5%)
Query: 90 GADILVEALERQGVTDVFAYPGGASMEIHQAL---TRSNNIRNVLPRHEQGGIFAAEGYA 146
GA L+++L R GV +F YPGGA + I+ L + I+++L RHEQG AA+GYA
Sbjct: 12 GAFALIDSLVRHGVKHIFGYPGGAILPIYDELYAWEKKGLIKHILVRHEQGAAHAADGYA 71
Query: 147 RSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVT 206
RS+GK G+C ATSGPGATNLV+G+A A +DSVPL+ ITGQV R IGTDAFQE I +T
Sbjct: 72 RSTGKVGVCFATSGPGATNLVTGIATAQMDSVPLLVITGQVGRAFIGTDAFQEVDIFGIT 131
Query: 207 RSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKD-----IQQQLAVPNWNQP 261
I KH+Y+V D DI RIV EAF +A GRPGPVLID+PKD P N
Sbjct: 132 LPIVKHSYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKDVGLEKFDYYPPEPG-NTI 190
Query: 262 IKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPV 319
IK+ G R +P+ +EQ +LI +S +P+LYVGGG + ++ +E+ + EL IPV
Sbjct: 191 IKILGC--RPIYKPTIKRIEQAAKLILQSSQPLLYVGGGAIISDAHQEITELAELYKIPV 248
Query: 320 ASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASR 379
+TLMG G F L L MLGMHGT YAN+AV + DLL+A G RFDDRVTGKL+ FA
Sbjct: 249 TTTLMGKGIFDEDHPLCLGMLGMHGTAYANFAVSECDLLIALGARFDDRVTGKLDEFACN 308
Query: 380 AKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFD---FSAWREELD 436
A+++HIDID AEIGKN+ P V++ D+K L+ + +L K++ + AWRE ++
Sbjct: 309 AQVIHIDIDPAEIGKNRIPQVAIVGDVKKVLQELLELL--KNSPNLLESEQTQAWRERIN 366
Query: 437 EQKVKYPLSFKTFEESIPPQYAIQVLDELTN--GEAIISTGVGQHQMWAAQFYKYRRPRQ 494
+ +YPL S+ PQ +V++E++ +A +T VGQHQMWAAQF K +PR+
Sbjct: 367 RWRKEYPLLIPKPSTSLSPQ---EVINEISQLAPDAYFTTDVGQHQMWAAQFLKC-KPRK 422
Query: 495 WLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLL 554
WL+S GLG MG+GLPAAIGA +A+P+ +++ I GD SF MN+QEL TI LPIKI+++
Sbjct: 423 WLSSAGLGTMGYGLPAAIGAQIAHPNELVICISGDASFQMNLQELGTIAQYNLPIKIIII 482
Query: 555 NNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRA 614
NN+ GMV QW+ FY +H S E P+ +K AEA GI G ++ + DL++
Sbjct: 483 NNKWQGMVRQWQQAFYGERYSH------SNMEEGAPDFVKLAEAYGIKGLRIKSRKDLKS 536
Query: 615 AIQTMLDTPGPYLLDVIFPHQEHVLPMIPSG 645
+++ LD GP L+D E+ PM+ G
Sbjct: 537 SLKEALDYDGPVLIDCQVIEDENCYPMVAPG 567
>gnl|CDD|236380 PRK09107, PRK09107, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 595
Score = 622 bits (1605), Expect = 0.0
Identities = 265/571 (46%), Positives = 372/571 (65%), Gaps = 28/571 (4%)
Query: 90 GADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS 149
GA+++V+AL+ QGV +F YPGGA + I+ + + ++I+++L RHEQG AAEGYARS+
Sbjct: 13 GAEMVVQALKDQGVEHIFGYPGGAVLPIYDEIFQQDDIQHILVRHEQGAGHAAEGYARST 72
Query: 150 GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSI 209
GKPG+ + TSGPGATN V+ L DAL+DS+PLV ITGQVP +IG+DAFQE V +TR
Sbjct: 73 GKPGVVLVTSGPGATNAVTPLQDALMDSIPLVCITGQVPTHLIGSDAFQECDTVGITRPC 132
Query: 210 TKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMS 269
TKHN+LV DV+D+ R++ EAF +ATSGRPGPV++D+PKD+ Q A + P K P ++S
Sbjct: 133 TKHNWLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKDV--QFATGTYTPPQKAPVHVS 190
Query: 270 RLPKEPSEVH-LEQIVRLISESKKPVLYVGGGCLNS----SEELRKFVELTGIPVASTLM 324
PK + + + V L++ +K+PV+Y GGG +NS S LR+ VELTG P+ STLM
Sbjct: 191 YQPKVKGDAEAITEAVELLANAKRPVIYSGGGVINSGPEASRLLRELVELTGFPITSTLM 250
Query: 325 GLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVH 384
GLG++P + + L MLGMHGT AN A+ D++L G RFDDR+TG+L+AF+ +K +H
Sbjct: 251 GLGAYPASGKNWLGMLGMHGTYEANMAMHDCDVMLCVGARFDDRITGRLDAFSPNSKKIH 310
Query: 385 IDIDSAEIGKNKQPHV-------SVCADLKLALKGINRILGGKDAEGRFDFSAWREELDE 437
IDID + I KN + V V D+ K + D E + W ++
Sbjct: 311 IDIDPSSINKNVRVDVPIIGDVGHVLEDMLRLWKARGKKP---DKEAL---ADWWGQIAR 364
Query: 438 QKVKYPLSFKTFEESIPPQYAIQVLDELTNG-EAIISTGVGQHQMWAAQFYKYRRPRQWL 496
+ + L++ ++ I PQYAIQ L ELT G + I+T VGQHQMWAAQF+ + P +W+
Sbjct: 365 WRARNSLAYTPSDDVIMPQYAIQRLYELTKGRDTYITTEVGQHQMWAAQFFGFEEPNRWM 424
Query: 497 TSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNN 556
TSGGLG MG+GLPAA+G +A+PDA+++DI GD S M +QE++T LP+KI +LNN
Sbjct: 425 TSGGLGTMGYGLPAALGVQIAHPDALVIDIAGDASIQMCIQEMSTAVQYNLPVKIFILNN 484
Query: 557 QHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAI 616
Q++GMV QW+ + +H+Y +E P+ +K AEA G G + + DL AI
Sbjct: 485 QYMGMVRQWQQLLHGNRLSHSY-------TEAMPDFVKLAEAYGAVGIRCEKPGDLDDAI 537
Query: 617 QTMLDTPGPYLLDVIFPHQEHVLPMIPSGGA 647
Q M+D P + D + E+ PMIPSG A
Sbjct: 538 QEMIDVDKPVIFDCRVANLENCFPMIPSGKA 568
>gnl|CDD|180672 PRK06725, PRK06725, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 570
Score = 604 bits (1558), Expect = 0.0
Identities = 271/571 (47%), Positives = 372/571 (65%), Gaps = 21/571 (3%)
Query: 86 QPRK--GADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAE 143
Q + GA +++ L++ GVT VF YPGGA + ++ AL S ++++L RHEQ I AAE
Sbjct: 11 QCEEVTGAGHVIQCLKKLGVTTVFGYPGGAILPVYDALYESG-LKHILTRHEQAAIHAAE 69
Query: 144 GYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIV 203
GYAR+SGK G+ ATSGPGATNLV+GLADA +DS+PLV ITGQV +IG D FQE +V
Sbjct: 70 GYARASGKVGVVFATSGPGATNLVTGLADAYMDSIPLVVITGQVATPLIGKDGFQEADVV 129
Query: 204 EVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIK 263
+T +TKHNY V DV+ + RIV+EAF +A SGRPGPVLID+PKD+Q + +N+ ++
Sbjct: 130 GITVPVTKHNYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDVQNEKVTSFYNEVVE 189
Query: 264 LPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNS--SEELRKFVELTGIPVAS 321
+PGY + P + L ++ + IS++K+P+LY+GGG ++S SEEL +F IPV S
Sbjct: 190 IPGY--KPEPRPDSMKLREVAKAISKAKRPLLYIGGGVIHSGGSEELIEFARENRIPVVS 247
Query: 322 TLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAK 381
TLMGLG++P D L L MLGMHGT AN AV + DLLLA GVRFDDRVTGKLE F+ +K
Sbjct: 248 TLMGLGAYPPGDPLFLGMLGMHGTYAANMAVTECDLLLALGVRFDDRVTGKLELFSPHSK 307
Query: 382 IVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVK 441
VHIDID +E KN V D+K AL + + + W +++ K +
Sbjct: 308 KVHIDIDPSEFHKNVAVEYPVVGDVKKALHMLLHMSIHTQTD------EWLQKVKTWKEE 361
Query: 442 YPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGL 501
YPLS+K E + PQ+ I ++ ELTNGEAI++T VGQHQMWAA FYK + PR +LTSGGL
Sbjct: 362 YPLSYKQKESELKPQHVINLVSELTNGEAIVTTEVGQHQMWAAHFYKAKNPRTFLTSGGL 421
Query: 502 GAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGM 561
G MGFG PAAIGA +A + +++ I GD SF MN+QEL TI +P+K+ ++NN+ LGM
Sbjct: 422 GTMGFGFPAAIGAQLAKEEELVICIAGDASFQMNIQELQTIAENNIPVKVFIINNKFLGM 481
Query: 562 VMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD 621
V QW++ FY+ + + +G P+ +K AEA G+ G + T + + +
Sbjct: 482 VRQWQEMFYENRLSESKIGS--------PDFVKVAEAYGVKGLRATNSTEAKQVMLEAFA 533
Query: 622 TPGPYLLDVIFPHQEHVLPMIPSGGAFKDVI 652
GP ++D E+V PM+P ++I
Sbjct: 534 HEGPVVVDFCVEEGENVFPMVPPNKGNNEMI 564
>gnl|CDD|181257 PRK08155, PRK08155, acetolactate synthase catalytic subunit;
Validated.
Length = 564
Score = 591 bits (1525), Expect = 0.0
Identities = 253/570 (44%), Positives = 352/570 (61%), Gaps = 25/570 (4%)
Query: 90 GADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS 149
GA+++V LERQG+ V PGGA + ++ AL++S IR++L RHEQG F A+G AR++
Sbjct: 15 GAELIVRLLERQGIRIVTGIPGGAILPLYDALSQSTQIRHILARHEQGAGFIAQGMARTT 74
Query: 150 GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSI 209
GKP +C+A SGPGATNLV+ +ADA LDS+PLV ITGQVP MIGTDAFQE ++ I
Sbjct: 75 GKPAVCMACSGPGATNLVTAIADARLDSIPLVCITGQVPASMIGTDAFQEVDTYGISIPI 134
Query: 210 TKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQ-LAVPNWNQP-IKLPGY 267
TKHNYLV D++++P+++ +AF +A SGRPGPV ID+PKD+Q + + P K
Sbjct: 135 TKHNYLVRDIEELPQVISDAFRIAQSGRPGPVWIDIPKDVQTAVIELEALPAPAEKDA-- 192
Query: 268 MSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNS--SEELRKFVELTGIPVASTLMG 325
E + +I+ +K+PVLY+GGG +NS R+ E +P TLM
Sbjct: 193 ----APAFDEESIRDAAAMINAAKRPVLYLGGGVINSGAPARARELAEKAQLPTTMTLMA 248
Query: 326 LGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHI 385
LG P LSL MLGMHG NY + ++DLL+ G RFDDR GK E F AKI+H+
Sbjct: 249 LGMLPKAHPLSLGMLGMHGARSTNYILQEADLLIVLGARFDDRAIGKTEQFCPNAKIIHV 308
Query: 386 DIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLS 445
DID AE+GK KQPHV++ AD+ L + ++ +A+ R + W + + + + ++P
Sbjct: 309 DIDRAELGKIKQPHVAIQADVDDVLAQLLPLV---EAQPR---AEWHQLVADLQREFPCP 362
Query: 446 FKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMG 505
++ + I + + AII+T VGQHQMW AQ Y RPRQWLTSGGLG MG
Sbjct: 363 IPKADDPLSHYGLINAVAACVDDNAIITTDVGQHQMWTAQAYPLNRPRQWLTSGGLGTMG 422
Query: 506 FGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQW 565
FGLPAAIGAA+ANP+ ++ GDGS +MN+QE+AT +L +KI+L+NN+ LG+V Q
Sbjct: 423 FGLPAAIGAALANPERKVLCFSGDGSLMMNIQEMATAAENQLDVKIILMNNEALGLVHQQ 482
Query: 566 EDRFYKANR-AHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPG 624
+ FY A TY G N ++ A G+ + +AD +AA+Q ++ PG
Sbjct: 483 QSLFYGQRVFAATYPGK--------INFMQIAAGFGLETCDLNNEADPQAALQEAINRPG 534
Query: 625 PYLLDVIFPHQEHVLPMIPSGGAFKDVITE 654
P L+ V +E V PM+P G A ++I E
Sbjct: 535 PALIHVRIDAEEKVYPMVPPGAANTEMIGE 564
>gnl|CDD|235766 PRK06276, PRK06276, acetolactate synthase catalytic subunit;
Reviewed.
Length = 586
Score = 584 bits (1506), Expect = 0.0
Identities = 254/576 (44%), Positives = 367/576 (63%), Gaps = 24/576 (4%)
Query: 89 KGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARS 148
KGA+ +++ALE +GV +F YPGGA + + AL S+ + ++L RHEQ AA+GYAR+
Sbjct: 2 KGAEAIIKALEAEGVKIIFGYPGGALLPFYDALYDSD-LIHILTRHEQAAAHAADGYARA 60
Query: 149 SGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRS 208
SGK G+C+ATSGPGATNLV+G+A A DS P++A+TGQVP ++IG DAFQE + +
Sbjct: 61 SGKVGVCVATSGPGATNLVTGIATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGIFMP 120
Query: 209 ITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQ-QQLAVPNWNQP--IKLP 265
ITKHN+ + ++IP I R AF +A +GRPGPV ID+PKD+Q +L + + P I LP
Sbjct: 121 ITKHNFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKDVQEGELDLEKYPIPAKIDLP 180
Query: 266 GYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTL 323
GY P + +++ LI+E+++PV+ GGG + +SEEL + EL IPV +TL
Sbjct: 181 GYKPTTFGHP--LQIKKAAELIAEAERPVILAGGGVIISGASEELIELSELVKIPVCTTL 238
Query: 324 MGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIV 383
MG G+FP L+L M+GMHGT ANY+V +SD+L+A G RF DR TG + +FA AKI+
Sbjct: 239 MGKGAFPEDHPLALGMVGMHGTKAANYSVTESDVLIAIGCRFSDRTTGDISSFAPNAKII 298
Query: 384 HIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYP 443
HIDID AEIGKN + V + D K L+ + L K+ + + S W E + + K +
Sbjct: 299 HIDIDPAEIGKNVRVDVPIVGDAKNVLRDLLAELMKKEIKNK---SEWLERVKKLKKESI 355
Query: 444 LSFKTFEESIPPQYAI----QVLDELT-NGEAIISTGVGQHQMWAAQFYKYRRPRQWLTS 498
++ I PQ I +VL E+ + II+T VGQ+QMW A F+K PR +++S
Sbjct: 356 PRMDFDDKPIKPQRVIKELMEVLREIDPSKNTIITTDVGQNQMWMAHFFKTSAPRSFISS 415
Query: 499 GGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQH 558
GGLG MGFG PAAIGA VA PDA ++ I GDG F+MN QELATI +P+ I + +N+
Sbjct: 416 GGLGTMGFGFPAAIGAKVAKPDANVIAITGDGGFLMNSQELATIAEYDIPVVICIFDNRT 475
Query: 559 LGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQT 618
LGMV QW++ +Y ++ +LG+ P+ +K AE+ G+ +V + +++ A++
Sbjct: 476 LGMVYQWQNLYYGKRQSEVHLGET-------PDFVKLAESYGVKADRVEKPDEIKEALKE 528
Query: 619 MLDTPGPYLLDVIFPHQEHVLPMIPSGGAFKDVITE 654
+ + PYLLD+I E LPM+P GG +++
Sbjct: 529 AIKSGEPYLLDIIIDPAE-ALPMVPPGGNLTNILGP 563
>gnl|CDD|180578 PRK06466, PRK06466, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 544 bits (1403), Expect = 0.0
Identities = 238/572 (41%), Positives = 350/572 (61%), Gaps = 23/572 (4%)
Query: 90 GADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS 149
GA++LV AL +GV ++ YPGGA + I+ AL + + + ++L RHEQ A+GYAR++
Sbjct: 6 GAEMLVRALRDEGVEYIYGYPGGAVLHIYDALFKQDKVEHILVRHEQAATHMADGYARAT 65
Query: 150 GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSI 209
GK G+ + TSGPGATN ++G+A A +DS+P+V ++GQVP +IG DAFQET +V ++R I
Sbjct: 66 GKTGVVLVTSGPGATNAITGIATAYMDSIPMVVLSGQVPSTLIGEDAFQETDMVGISRPI 125
Query: 210 TKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQP--IKLPGY 267
KH+++V +IP I+++AF +A SGRPGPV++D+PKD+ + P +KL Y
Sbjct: 126 VKHSFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKDMTNPAEKFEYEYPKKVKLRSY 185
Query: 268 MSRLPKEPSEVHLEQI---VRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVAST 322
H QI V ++ +K+PV+Y GGG + N+S L + L +PV +T
Sbjct: 186 -----SPAVRGHSGQIRKAVEMLLAAKRPVIYSGGGVVLGNASALLTELAHLLNLPVTNT 240
Query: 323 LMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKI 382
LMGLG FPGTD L MLGMHGT AN A+ +D++LA G RFDDRVT F AKI
Sbjct: 241 LMGLGGFPGTDRQFLGMLGMHGTYEANMAMHHADVILAVGARFDDRVTNGPAKFCPNAKI 300
Query: 383 VHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAE-GRFDFSAWREELDEQKVK 441
+HIDID A I K + + + ++ L + IL + + +AW +++DE + +
Sbjct: 301 IHIDIDPASISKTIKADIPIVGPVESVLTEMLAILKEIGEKPDKEALAAWWKQIDEWRGR 360
Query: 442 YPLSF--KTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSG 499
+ L K I PQ ++ L E+TNG+A +++ VGQHQM+AAQ+YK+ +P +W+ SG
Sbjct: 361 HGLFPYDKGDGGIIKPQQVVETLYEVTNGDAYVTSDVGQHQMFAAQYYKFNKPNRWINSG 420
Query: 500 GLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHL 559
GLG MGFGLPAA+G +A PD + + G+GS MN+QEL+T LP+KI+ LNN L
Sbjct: 421 GLGTMGFGLPAAMGVKLAFPDQDVACVTGEGSIQMNIQELSTCLQYGLPVKIINLNNGAL 480
Query: 560 GMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAI-QT 618
GMV QW+D Y+ +H+Y+ E P+ +K AEA G G ++T DL+ + +
Sbjct: 481 GMVRQWQDMQYEGRHSHSYM-------ESLPDFVKLAEAYGHVGIRITDLKDLKPKLEEA 533
Query: 619 MLDTPGPYLLDVIFPHQEHVLPMIPSGGAFKD 650
+D+ EHV PM + G+ +D
Sbjct: 534 FAMKDRLVFIDIYVDRSEHVYPMQIADGSMRD 565
>gnl|CDD|180919 PRK07282, PRK07282, acetolactate synthase catalytic subunit;
Reviewed.
Length = 566
Score = 540 bits (1393), Expect = 0.0
Identities = 246/564 (43%), Positives = 353/564 (62%), Gaps = 20/564 (3%)
Query: 85 DQPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEG 144
+ P+ G+D+++E L GV +F YPGGA + ++ A+ IR++L RHEQG + AEG
Sbjct: 7 ESPKSGSDLVLETLRDLGVDTIFGYPGGAVLPLYDAIYNFEGIRHILARHEQGALHEAEG 66
Query: 145 YARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVE 204
YA+S+GK G+ + TSGPGATN ++G+ADA+ DSVPL+ TGQV R IG DAFQE IV
Sbjct: 67 YAKSTGKLGVAVVTSGPGATNAITGIADAMSDSVPLLVFTGQVARAGIGKDAFQEADIVG 126
Query: 205 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQP-IK 263
+T ITK+NY + + DIPRI+ EA +AT+GRPGPV+ID+PKD+ L P +
Sbjct: 127 ITMPITKYNYQIRETADIPRIITEAVHIATTGRPGPVVIDLPKDV-SALETDFIYDPEVN 185
Query: 264 LPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGC--LNSSEELRKFVELTGIPVAS 321
LP Y L EP+++ +++I++ +S++KKPV+ GGG ++ EL F E IPV +
Sbjct: 186 LPSYQPTL--EPNDMQIKKILKQLSKAKKPVILAGGGINYAEAATELNAFAERYQIPVVT 243
Query: 322 TLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAK 381
TL+G G+ + L L M GMHG+ AN A+ ++D ++ G RFDDR+TG + FA AK
Sbjct: 244 TLLGQGTIATSHPLFLGMGGMHGSYAANIAMTEADFMINIGSRFDDRLTGNPKTFAKNAK 303
Query: 382 IVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVK 441
+ HIDID AEIGK + + V D K AL+ +L + + W E++ + K +
Sbjct: 304 VAHIDIDPAEIGKIIKTDIPVVGDAKKALQ---MLL--AEPTVHNNTEKWIEKVTKDKNR 358
Query: 442 YPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGL 501
S+ E + PQ I+ + ELTNG+AI+ T VGQHQMWAAQ+Y Y+ RQ +TSGGL
Sbjct: 359 VR-SYDKKERVVQPQAVIERIGELTNGDAIVVTDVGQHQMWAAQYYPYQNERQLVTSGGL 417
Query: 502 GAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGM 561
G MGFG+PAAIGA +ANPD ++ GDG F M QELA + + K+PIK+++LNN LGM
Sbjct: 418 GTMGFGIPAAIGAKIANPDKEVILFVGDGGFQMTNQELAILNIYKVPIKVVMLNNHSLGM 477
Query: 562 VMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD 621
V QW++ FY+ + + P+ A+A GI + L ++ + +
Sbjct: 478 VRQWQESFYEGRTSESVFDT-------LPDFQLMAQAYGIKHYKFDNPETLAQDLEVITE 530
Query: 622 TPGPYLLDVIFPHQEHVLPMIPSG 645
P L++V +EHVLPM+P+G
Sbjct: 531 DV-PMLIEVDISRKEHVLPMVPAG 553
>gnl|CDD|181602 PRK08979, PRK08979, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 572
Score = 505 bits (1303), Expect = e-173
Identities = 234/573 (40%), Positives = 348/573 (60%), Gaps = 25/573 (4%)
Query: 90 GADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS 149
GA ++V +L +GV +F YPGG+ ++I+ AL + I ++L RHEQ + A+GYAR++
Sbjct: 6 GASMIVRSLIDEGVKHIFGYPGGSVLDIYDALHEKSGIEHILVRHEQAAVHMADGYARAT 65
Query: 150 GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSI 209
GK G+ + TSGPGATN ++G+A A +DS+P+V ++GQVP +IG DAFQE ++ ++R +
Sbjct: 66 GKVGVVLVTSGPGATNTITGIATAYMDSIPMVVLSGQVPSNLIGNDAFQECDMIGISRPV 125
Query: 210 TKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMS 269
KH++LV D +DIP I+++AF +A++GRPGPV+ID+PKD P P + P +
Sbjct: 126 VKHSFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKDCLN----PAILHPYEYPESIK 181
Query: 270 RLPKEPSEV-HLEQIVRLIS---ESKKPVLYVGGGCLNSS--EELRKFVELTGIPVASTL 323
P+ H QI R + +KKPVLYVGGG + S +++ + E +PV STL
Sbjct: 182 MRSYNPTTSGHKGQIKRGLQALLAAKKPVLYVGGGAIISGADKQILQLAEKLNLPVVSTL 241
Query: 324 MGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIV 383
MGLG+FPGT + SL MLGMHG AN A+ +DL+ GVRFDDR T LE + A I+
Sbjct: 242 MGLGAFPGTHKNSLGMLGMHGRYEANMAMHNADLIFGIGVRFDDRTTNNLEKYCPNATIL 301
Query: 384 HIDIDSAEIGKNKQPHVSVCADLKLALKGINRIL----GGKDAEGRFDFSAWREELDEQK 439
HIDID + I K + + + L + +L D ++W E++ +
Sbjct: 302 HIDIDPSSISKTVRVDIPIVGSADKVLDSMLALLDESGETNDEAA---IASWWNEIEVWR 358
Query: 440 VKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSG 499
+ L++ E I PQ I+ L +LTNG+A +++ VGQHQM+AA +Y + +PR+W+ SG
Sbjct: 359 SRNCLAYDKSSERIKPQQVIETLYKLTNGDAYVASDVGQHQMFAALYYPFDKPRRWINSG 418
Query: 500 GLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHL 559
GLG MGFGLPAA+G A PD +V + GDGS MN+QEL+T +P+KI+ LNN+ L
Sbjct: 419 GLGTMGFGLPAAMGVKFAMPDETVVCVTGDGSIQMNIQELSTALQYDIPVKIINLNNRFL 478
Query: 560 GMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTM 619
GMV QW+D Y+ +H+Y+ P+ K AEA G G +++ +L + ++
Sbjct: 479 GMVKQWQDMIYQGRHSHSYMDS-------VPDFAKIAEAYGHVGIRISDPDELESGLEKA 531
Query: 620 LDTPGPYL-LDVIFPHQEHVLPMIPSGGAFKDV 651
L + +D+ EHV PM GGA ++
Sbjct: 532 LAMKDRLVFVDINVDETEHVYPMQIRGGAMNEM 564
>gnl|CDD|180780 PRK06965, PRK06965, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 587
Score = 503 bits (1298), Expect = e-172
Identities = 243/577 (42%), Positives = 357/577 (61%), Gaps = 24/577 (4%)
Query: 79 SSRFAPDQPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGG 138
S P GA+IL++AL +GV ++ YPGGA + I+ L + + I++VL RHEQ
Sbjct: 12 ESLSPPAADSIGAEILMKALAAEGVEFIWGYPGGAVLYIYDELYKQDKIQHVLVRHEQAA 71
Query: 139 IFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQ 198
+ AA+GYAR++GK G+ + TSGPG TN V+G+A A +DS+P+V I+GQVP IG DAFQ
Sbjct: 72 VHAADGYARATGKVGVALVTSGPGVTNAVTGIATAYMDSIPMVVISGQVPTAAIGQDAFQ 131
Query: 199 ETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNW 258
E V +TR I KHN+LV DV D+ V++AF +A +GRPGPV++D+PKD+ + +
Sbjct: 132 ECDTVGITRPIVKHNFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKDVSKTPCEYEY 191
Query: 259 NQPIKLPGYMSRLPKEPSEVHLEQI---VRLISESKKPVLYVGGGCL--NSSEELRKFVE 313
+ +++ Y ++ H QI V L+ +K+P +Y GGG + N+S ELR+ +
Sbjct: 192 PKSVEMRSY-----NPVTKGHSGQIRKAVSLLLSAKRPYIYTGGGVILANASRELRQLAD 246
Query: 314 LTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKL 373
L G PV +TLMGLG++P +D+ L MLGMHGT AN A+ D+L+A G RFDDRV G
Sbjct: 247 LLGYPVTNTLMGLGAYPASDKKFLGMLGMHGTYEANMAMQHCDVLIAIGARFDDRVIGNP 306
Query: 374 EAFASRA-KIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFD---FS 429
FASR KI+HIDID + I K + + + D+K LK + I + AE D +
Sbjct: 307 AHFASRPRKIIHIDIDPSSISKRVKVDIPIVGDVKEVLKEL--IEQLQTAEHGPDADALA 364
Query: 430 AWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKY 489
W ++++ + + L + E I PQY ++ L ELT+G+A + + VGQHQMWAAQFY++
Sbjct: 365 QWWKQIEGWRSRDCLKYDRESEIIKPQYVVEKLWELTDGDAFVCSDVGQHQMWAAQFYRF 424
Query: 490 RRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPI 549
PR+W+ SGGLG MG GLP A+G +A+PD +V I G+GS M +QEL+T P+
Sbjct: 425 NEPRRWINSGGLGTMGVGLPYAMGIKMAHPDDDVVCITGEGSIQMCIQELSTCLQYDTPV 484
Query: 550 KILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRK 609
KI+ LNN++LGMV QW++ Y +H+Y+ + P+ +K AEA G G ++ +
Sbjct: 485 KIISLNNRYLGMVRQWQEIEYSKRYSHSYM-------DALPDFVKLAEAYGHVGMRIEKT 537
Query: 610 ADLRAAIQTMLDTPG-PYLLDVIFPHQEHVLPMIPSG 645
+D+ A++ L LD E+V PM+ +G
Sbjct: 538 SDVEPALREALRLKDRTVFLDFQTDPTENVWPMVQAG 574
>gnl|CDD|181185 PRK07979, PRK07979, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 498 bits (1284), Expect = e-170
Identities = 237/580 (40%), Positives = 351/580 (60%), Gaps = 21/580 (3%)
Query: 90 GADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS 149
GA+++V +L QGV VF YPGGA ++I+ AL I +VL RHEQ + A+G AR++
Sbjct: 6 GAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGLARAT 65
Query: 150 GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSI 209
G+ G+ + TSGPGATN ++G+A A +DS+PLV ++GQV +IG DAFQE +V ++R +
Sbjct: 66 GEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVGISRPV 125
Query: 210 TKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMS 269
KH++LV +DIP+++++AF LA SGRPGPV++D+PKDI P P P +S
Sbjct: 126 VKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDILN----PANKLPYVWPESVS 181
Query: 270 RLPKEPS-EVHLEQIVR---LISESKKPVLYVGGGCLNS--SEELRKFVELTGIPVASTL 323
P+ + H QI R + +KKPV+YVGGG +N+ ++L++ VE +PV S+L
Sbjct: 182 MRSYNPTTQGHKGQIKRALQTLVAAKKPVVYVGGGAINAACHQQLKELVEKLNLPVVSSL 241
Query: 324 MGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIV 383
MGLG+FP T SL MLGMHGT AN + +D++ A GVRFDDR T L + A ++
Sbjct: 242 MGLGAFPATHRQSLGMLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNNLAKYCPNATVL 301
Query: 384 HIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFD-FSAWREELDEQKVKY 442
HIDID I K + + D + L+ + +L + A D W +++++ + +
Sbjct: 302 HIDIDPTSISKTVTADIPIVGDARQVLEQMLELLSQESAHQPLDEIRDWWQQIEQWRARQ 361
Query: 443 PLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLG 502
L + T E I PQ I+ L LT G+A +++ VGQHQM+AA +Y + +PR+W+ SGGLG
Sbjct: 362 CLKYDTHSEKIKPQAVIETLWRLTKGDAYVTSDVGQHQMFAALYYPFDKPRRWINSGGLG 421
Query: 503 AMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMV 562
MGFGLPAA+G +A P+ +V + GDGS MN+QEL+T +LP+ +L LNN++LGMV
Sbjct: 422 TMGFGLPAALGVKMALPEETVVCVTGDGSIQMNIQELSTALQYELPVLVLNLNNRYLGMV 481
Query: 563 MQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDT 622
QW+D Y + +Y+ + P+ ++ AEA G G Q++ +L + + L+
Sbjct: 482 KQWQDMIYSGRHSQSYM-------QSLPDFVRLAEAYGHVGIQISHPDELESKLSEALEQ 534
Query: 623 PGPYLL---DVIFPHQEHVLPMIPSGGAFKDVITEGDGRT 659
L DV EHV PM GG ++ RT
Sbjct: 535 VRNNRLVFVDVTVDGSEHVYPMQIRGGGMDEMWLSKTERT 574
>gnl|CDD|168717 PRK06882, PRK06882, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 497 bits (1282), Expect = e-170
Identities = 237/571 (41%), Positives = 353/571 (61%), Gaps = 19/571 (3%)
Query: 90 GADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS 149
GA+++V++L +GV VF YPGG+ ++I+ A+ I +VL RHEQ + A+GYARS+
Sbjct: 6 GAEMVVQSLRDEGVEYVFGYPGGSVLDIYDAIHTLGGIEHVLVRHEQAAVHMADGYARST 65
Query: 150 GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSI 209
GK G + TSGPGATN ++G+A A DSVPLV ++GQVP +IGTDAFQE ++ ++R +
Sbjct: 66 GKVGCVLVTSGPGATNAITGIATAYTDSVPLVILSGQVPSNLIGTDAFQECDMLGISRPV 125
Query: 210 TKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMS 269
KH+++V + +DIP +++AF +A++GRPGPV+ID+PKD+ P + P +S
Sbjct: 126 VKHSFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKDMVN----PANKFTYEYPEEVS 181
Query: 270 RLPKEPS----EVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTL 323
P+ + +++ ++ + +KKPVL+VGGG + SE+L +F + +PV S+L
Sbjct: 182 LRSYNPTVQGHKGQIKKALKALLVAKKPVLFVGGGVITAECSEQLTQFAQKLNLPVTSSL 241
Query: 324 MGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIV 383
MGLG++P TD+ L MLGMHGT AN A+ +SDL+L GVRFDDR T L + AK++
Sbjct: 242 MGLGAYPSTDKQFLGMLGMHGTYEANNAMHESDLILGIGVRFDDRTTNNLAKYCPNAKVI 301
Query: 384 HIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKD-AEGRFDFSAWREELDEQKVKY 442
HIDID I KN ++ + K L+ +L ++ A+ + D +AW ++++E K K
Sbjct: 302 HIDIDPTSISKNVPAYIPIVGSAKNVLEEFLSLLEEENLAKSQTDLTAWWQQINEWKAKK 361
Query: 443 PLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLG 502
L F + I PQ ++ + LTNG+A +++ VGQHQM+AA Y + +PR+W+ SGG G
Sbjct: 362 CLEFDRTSDVIKPQQVVEAIYRLTNGDAYVASDVGQHQMFAALHYPFDKPRRWINSGGAG 421
Query: 503 AMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMV 562
MGFGLPAAIG A+P+A +V + GDGS MN+QEL+T K +P+ I+ LNN+ LGMV
Sbjct: 422 TMGFGLPAAIGVKFAHPEATVVCVTGDGSIQMNIQELSTAKQYDIPVVIVSLNNRFLGMV 481
Query: 563 MQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDT 622
QW+D Y + Y+ P+ K AEA G G Q+ +L +
Sbjct: 482 KQWQDLIYSGRHSQVYMNS-------LPDFAKLAEAYGHVGIQIDTPDELEEKLTQAFSI 534
Query: 623 PGPYL-LDVIFPHQEHVLPMIPSGGAFKDVI 652
+ +DV EHV PM GGA ++I
Sbjct: 535 KDKLVFVDVNVDETEHVYPMQIRGGAMNEMI 565
>gnl|CDD|180569 PRK06456, PRK06456, acetolactate synthase catalytic subunit;
Reviewed.
Length = 572
Score = 404 bits (1039), Expect = e-133
Identities = 216/573 (37%), Positives = 333/573 (58%), Gaps = 22/573 (3%)
Query: 90 GADILVEALERQGVTDVFAYPGGASMEIHQALT---RSNNIRNVLPRHEQGGIFAAEGYA 146
GA ILV++L+R+GV +F PG ++M+I+ A + +R+VL RHEQ AA+GYA
Sbjct: 4 GARILVDSLKREGVKVIFGIPGLSNMQIYDAFVEDLANGELRHVLMRHEQAAAHAADGYA 63
Query: 147 RSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVT 206
R+SG PG+C ATSGPG TNLV+GL A DS P++AITGQVPR ++G AFQE + V
Sbjct: 64 RASGVPGVCTATSGPGTTNLVTGLITAYWDSSPVIAITGQVPRSVMGKMAFQEADAMGVF 123
Query: 207 RSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQ-QQLAVPNWNQPIKLP 265
++TK+ + +D+IP+ ++ AF +AT+GRPGPV+ID+P+DI +++ W + +
Sbjct: 124 ENVTKYVIGIKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRDIFYEKMEEIKWPEKPLVK 183
Query: 266 GYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTL 323
GY P + L++ ++ +++P++ VG G + N++ E+ + EL IP+ ST
Sbjct: 184 GY-RDFPTRIDRLALKKAAEILINAERPIILVGTGVVWSNATPEVLELAELLHIPIVSTF 242
Query: 324 MGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDR-VTGKLEAFASRAKI 382
G + P L +G +G A+ A +SD +L G RF DR T E +R K
Sbjct: 243 PGKTAIPHDHPLYFGPMGYYGRAEASMAALESDAMLVVGARFSDRTFTSYDEMVETRKKF 302
Query: 383 VHIDIDSAEIGKNKQPHVSVCADLKLALKG-INRILGGKDAEGRFDFSAWREELDEQKVK 441
+ ++ID + K + V + + K+ L+ I I + + D SAW + + E K +
Sbjct: 303 IMVNIDPTDGEKAIKVDVGIYGNAKIILRELIKAIT---ELGQKRDRSAWLKRVKEYK-E 358
Query: 442 YPLSFKTFEES--IPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSG 499
Y F EE+ + P ++ + + +AI++TGVGQHQMWA F++ PR +LTS
Sbjct: 359 YYSQFYYTEENGKLKPWKIMKTIRQALPRDAIVTTGVGQHQMWAEVFWEVLEPRTFLTSS 418
Query: 500 GLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHL 559
G+G MGFGLPAA+GA +A PD ++VD+DGDGSF+M LAT E +P+ ++ +N+ L
Sbjct: 419 GMGTMGFGLPAAMGAKLARPDKVVVDLDGDGSFLMTGTNLATAVDEHIPVISVIFDNRTL 478
Query: 560 GMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTM 619
G+V Q +D F+ G PS P+ +K AEA G G VT D+ ++++
Sbjct: 479 GLVRQVQDLFFGKRIVGVDYG-PS------PDFVKLAEAFGALGFNVTTYEDIEKSLKSA 531
Query: 620 LDTPGPYLLDVIFPHQEHVLPMIPSGGAFKDVI 652
+ P ++ V +E LP +P GG K VI
Sbjct: 532 IKEDIPAVIRVPVDKEELALPTLPPGGRLKQVI 564
>gnl|CDD|236239 PRK08322, PRK08322, acetolactate synthase; Reviewed.
Length = 547
Score = 358 bits (921), Expect = e-116
Identities = 181/550 (32%), Positives = 285/550 (51%), Gaps = 34/550 (6%)
Query: 89 KGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARS 148
K AD+ V+ LE +GV +F PG ++++ +AL S+ I+ +L RHEQG F A Y R
Sbjct: 2 KAADLFVKCLENEGVEYIFGIPGEENLDLLEALRDSS-IKLILTRHEQGAAFMAATYGRL 60
Query: 149 SGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRS 208
+GK G+C++T GPGATNLV+G+A A L +P+VAITGQ P + +FQ +V +
Sbjct: 61 TGKAGVCLSTLGPGATNLVTGVAYAQLGGMPMVAITGQKPIKRSKQGSFQIVDVVAMMAP 120
Query: 209 ITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYM 268
+TK ++ D+IP +VREAF LA RPG V +++P+DI A +P LP
Sbjct: 121 LTKWTRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPEDIA---AEETDGKP--LPRSY 175
Query: 269 SRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTLMGL 326
SR P S +E+ I +K P++ +G G +S+ L +FV+ TGIP +T MG
Sbjct: 176 SRRP-YASPKAIERAAEAIQAAKNPLILIGAGANRKTASKALTEFVDKTGIPFFTTQMGK 234
Query: 327 GSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRA---KIV 383
G P T LSL G+ Y + A++ +DL++ G D V K F + K++
Sbjct: 235 GVIPETHPLSLGTAGLSQGDYVHCAIEHADLIINVG--HD--VIEKPPFFMNPNGDKKVI 290
Query: 384 HIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYP 443
HI+ AE+ P V V D+ +L + L + F RE ++ +
Sbjct: 291 HINFLPAEVDPVYFPQVEVVGDIANSLWQLKERLADQPHWDFPRFLKIREAIEAHLEEGA 350
Query: 444 LSFKTFEESIP--PQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGL 501
++ P PQ + L ++ + I+ G +++W A+ Y+ P L L
Sbjct: 351 -----DDDRFPMKPQRIVADLRKVMPDDDIVILDNGAYKIWFARNYRAYEPNTCLLDNAL 405
Query: 502 GAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGM 561
MG GLP+AI A + +PD ++ + GDG F+MN QEL T LP+ +L+LN+ GM
Sbjct: 406 ATMGAGLPSAIAAKLVHPDRKVLAVCGDGGFMMNSQELETAVRLGLPLVVLILNDNAYGM 465
Query: 562 VMQW-EDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTML 620
+ +W ++ + + G+ P+ +K+AE+ G G +V DL ++ L
Sbjct: 466 I-RWKQENMGFEDFGLDF-GN--------PDFVKYAESYGAKGYRVESADDLLPTLEEAL 515
Query: 621 DTPGPYLLDV 630
PG +++D
Sbjct: 516 AQPGVHVIDC 525
>gnl|CDD|238973 cd02015, TPP_AHAS, Thiamine pyrophosphate (TPP) family,
Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding
module; composed of proteins similar to the large
catalytic subunit of AHAS. AHAS catalyzes the
condensation of two molecules of pyruvate to give the
acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the
precursor of the branched chain amino acids, valine and
leucine. AHAS also catalyzes the condensation of
pyruvate and 2-ketobutyrate to form
2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In
addition to requiring TPP and a divalent metal ion as
cofactors, AHAS requires FAD.
Length = 186
Score = 328 bits (844), Expect = e-110
Identities = 106/193 (54%), Positives = 137/193 (70%), Gaps = 7/193 (3%)
Query: 453 IPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAI 512
I PQ I+ L ELT G+AI++T VGQHQMWAAQ+Y++++PR WLTSGGLG MGFGLPAAI
Sbjct: 1 IKPQEVIKELSELTPGDAIVTTDVGQHQMWAAQYYRFKKPRSWLTSGGLGTMGFGLPAAI 60
Query: 513 GAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKA 572
GA VA PD ++ IDGDGSF MN+QELAT LP+KI++LNN LGMV QW++ FY+
Sbjct: 61 GAKVARPDKTVICIDGDGSFQMNIQELATAAQYNLPVKIVILNNGSLGMVRQWQELFYEG 120
Query: 573 NRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIF 632
+HT L P+ +K AEA GI G +V + +L AA++ L + GP LLDV+
Sbjct: 121 RYSHTTLDSN-------PDFVKLAEAYGIKGLRVEKPEELEAALKEALASDGPVLLDVLV 173
Query: 633 PHQEHVLPMIPSG 645
+E+VLPM+P G
Sbjct: 174 DPEENVLPMVPPG 186
>gnl|CDD|183066 PRK11269, PRK11269, glyoxylate carboligase; Provisional.
Length = 591
Score = 336 bits (864), Expect = e-107
Identities = 187/561 (33%), Positives = 296/561 (52%), Gaps = 33/561 (5%)
Query: 91 ADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS- 149
D V LE++GVT F PG A + A+ + IR++L RH +G AEGY R++
Sbjct: 7 VDAAVLVLEKEGVTTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATA 66
Query: 150 GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSI 209
G G+CI TSGP T++++GL A DS+P++ ITGQ PR + + FQ I + + +
Sbjct: 67 GNIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIESIAKPV 126
Query: 210 TKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAV--PNWNQPIKLPGY 267
TK V + +PR+ ++AF L SGRPGPVLID+P D+Q P+ +P LP Y
Sbjct: 127 TKWAVTVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFDVQVAEIEFDPDTYEP--LPVY 184
Query: 268 MSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNS--SEELRKFVELTGIPVASTLMG 325
+ +E+ + +++ +++P++ GGG +N+ S+ L +F ELTG+PV TLMG
Sbjct: 185 KP----AATRAQIEKALEMLNAAERPLIVAGGGVINADASDLLVEFAELTGVPVIPTLMG 240
Query: 326 LGSFPGTDELSLQMLGMHG----TVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAK 381
G+ P L M GM G Y N + SD +L G R+ +R TG +E + K
Sbjct: 241 WGAIPDDHPL---MAGMVGLQTSHRYGNATLLASDFVLGIGNRWANRHTGSVEVYTKGRK 297
Query: 382 IVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRF-DFSAWREELDEQKV 440
VH+DI+ +IG+ P + + +D K AL+ + + A GR D SAW + Q+
Sbjct: 298 FVHVDIEPTQIGRVFGPDLGIVSDAKAALELLVEVAREWKAAGRLPDRSAWVADC--QER 355
Query: 441 KYPLSFKTFEESIP--PQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTS 498
K L KT +++P PQ + +++ + + +G Q+ AAQF +PR W+
Sbjct: 356 KRTLLRKTHFDNVPIKPQRVYEEMNKAFGRDTCYVSTIGLSQIAAAQFLHVYKPRHWINC 415
Query: 499 GGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQH 558
G G +G+ +PAA+G A+PD +V + GD F ++ELA LP +L+NN +
Sbjct: 416 GQAGPLGWTIPAALGVRAADPDRNVVALSGDYDFQFLIEELAVGAQFNLPYIHVLVNNAY 475
Query: 559 LGMVMQWEDRF---YKANRAHTYLGDPSRESEIF-PNMLKFAEACGIPGAQVTRKADLRA 614
LG++ Q + F Y A + S E + + +K AE G +V + D+
Sbjct: 476 LGLIRQAQRAFDMDYCVQLA--FENINSPELNGYGVDHVKVAEGLGCKAIRVFKPEDIAP 533
Query: 615 AIQT----MLDTPGPYLLDVI 631
A++ M + P +++VI
Sbjct: 534 ALEQAKALMAEFRVPVVVEVI 554
>gnl|CDD|213633 TIGR01504, glyox_carbo_lig, glyoxylate carboligase. Glyoxylate
carboligase, also called tartronate-semialdehyde
synthase, releases CO2 while synthesizing a single
molecule of tartronate semialdehyde from two molecules
of glyoxylate. It is a thiamine pyrophosphate-dependent
enzyme, closely related in sequence to the large subunit
of acetolactate synthase. In the D-glycerate pathway,
part of allantoin degradation in the Enterobacteriaceae,
tartronate semialdehyde is converted to D-glycerate and
then 3-phosphoglycerate, a product of glycolysis and
entry point in the general metabolism.
Length = 588
Score = 305 bits (783), Expect = 2e-95
Identities = 171/541 (31%), Positives = 283/541 (52%), Gaps = 21/541 (3%)
Query: 89 KGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARS 148
+ D V LE++G+T F PG A + AL IR++L RH +G AEGY R+
Sbjct: 4 RAVDAAVYVLEKEGITTAFGVPGAAINPFYSALKAHGGIRHILARHVEGASHMAEGYTRA 63
Query: 149 -SGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTR 207
+G G+CI TSGP T++++GL A DS+P++ ITGQ PR + + FQ I + +
Sbjct: 64 TAGNIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIAAIAK 123
Query: 208 SITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAV--PNWNQPIKLP 265
++K V + +PR++++AF L SGRPGPVLID+P D+Q P+ +P LP
Sbjct: 124 PVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDVQVAEIEFDPDTYEP--LP 181
Query: 266 GYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLN--SSEELRKFVELTGIPVASTL 323
Y + +E+ V +++ +++P++ GGG +N +++ L++F ELTG+PV TL
Sbjct: 182 VYKPAA----TRAQIEKAVEMLNAAERPLIVAGGGVINADAADLLQEFAELTGVPVIPTL 237
Query: 324 MGLGSFPGTDELSLQMLGMHGT-VYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKI 382
MG G P EL M+G+ + Y N + +SD + G R+ +R TG ++ + K
Sbjct: 238 MGWGCIPDDHELMAGMVGLQTSHRYGNATLLESDFVFGIGNRWANRHTGSVDVYTEGRKF 297
Query: 383 VHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRF-DFSAWREELDEQKVK 441
VH+DI+ +IG+ P + + +D K ALK + + GR D S W + ++K
Sbjct: 298 VHVDIEPTQIGRVFAPDLGIVSDAKAALKLLVEVAQELKKAGRLPDRSEWAADCQQRKRT 357
Query: 442 YPLSFKTFEESIP--PQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSG 499
L KT +++P PQ + +++ + T +G Q+ AQ +PR W+ G
Sbjct: 358 --LLRKTHFDNVPVKPQRVYEEMNKAFGRDVCYVTTIGLSQIAGAQMLHVYKPRHWINCG 415
Query: 500 GLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHL 559
G +G+ +PAA+G A+P +V + GD F ++ELA +P +L+NN +L
Sbjct: 416 QAGPLGWTIPAALGVCAADPKRNVVALSGDYDFQFMIEELAVGAQHNIPYIHVLVNNAYL 475
Query: 560 GMVMQWEDRF---YKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAI 616
G++ Q + F Y A + + + +K AE G +V + ++ A
Sbjct: 476 GLIRQAQRAFDMDYCVQLAFENINSSE-VNGYGVDHVKVAEGLGCKAIRVFKPEEIAPAF 534
Query: 617 Q 617
+
Sbjct: 535 E 535
>gnl|CDD|181285 PRK08199, PRK08199, thiamine pyrophosphate protein; Validated.
Length = 557
Score = 300 bits (771), Expect = 6e-94
Identities = 169/566 (29%), Positives = 258/566 (45%), Gaps = 59/566 (10%)
Query: 87 PRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYA 146
R G ILV+AL GV VF PG + + + AL +IR ++ R E G AE Y
Sbjct: 7 ARTGGQILVDALRANGVERVFCVPGESYLAVLDALHDETDIRVIVCRQEGGAAMMAEAYG 66
Query: 147 RSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVT 206
+ +G+PGIC T GPGATN G+ A DS P++ GQV R +AFQE +
Sbjct: 67 KLTGRPGICFVTRGPGATNASIGVHTAFQDSTPMILFVGQVARDFREREAFQEIDYRRMF 126
Query: 207 RSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDI-QQQLAVPNWNQPIKLP 265
+ K + D IP +V AF +ATSGRPGPV++ +P+D+ + VP+ P
Sbjct: 127 GPMAKWVAEIDDAARIPELVSRAFHVATSGRPGPVVLALPEDVLSETAEVPD------AP 180
Query: 266 GYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNS--SEELRKFVELTGIPVASTL 323
Y P L ++ L++ +++P++ +GG +LR F E G+PVA
Sbjct: 181 PYRRVAA-APGAADLARLAELLARAERPLVILGGSGWTEAAVADLRAFAERWGLPVACAF 239
Query: 324 MGLGSFPGTD-----ELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGK---LEA 375
F +L LG++ + A + ++DL+LA G R + T L+
Sbjct: 240 RRQDLFDNRHPNYAGDLG---LGINPALAA--RIREADLVLAVGTRLGEVTTQGYTLLDI 294
Query: 376 FASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREEL 435
R +VH+ D+ E+G+ +P +++ AD L + ++ W
Sbjct: 295 PVPRQTLVHVHPDAEELGRVYRPDLAIVADPAAFA----AALAALEPPASPAWAEWTAAA 350
Query: 436 DEQKVKYPLSFKTFEESIPPQY---------AIQVLDELTNGEAIISTGVGQHQMWAAQF 486
+ P + L E +AII+ G G + W +F
Sbjct: 351 HA----------DYLAWSAPLPGPGAVQLGEVMAWLRERLPADAIITNGAGNYATWLHRF 400
Query: 487 YKYRRPRQWL--TSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKV 544
+++RR R L TS G+MG+GLPAAI A + P+ +V GDG F+MN QELAT
Sbjct: 401 FRFRRYRTQLAPTS---GSMGYGLPAAIAAKLLFPERTVVAFAGDGCFLMNGQELATAVQ 457
Query: 545 EKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGA 604
LPI ++++NN G + ++R Y + T L +P A A G G
Sbjct: 458 YGLPIIVIVVNNGMYGTIRMHQEREYPGRVSGTDLTNPD--------FAALARAYGGHGE 509
Query: 605 QVTRKADLRAAIQTMLDTPGPYLLDV 630
V R D A + L + P L+++
Sbjct: 510 TVERTEDFAPAFERALASGKPALIEI 535
>gnl|CDD|226469 COG3960, COG3960, Glyoxylate carboligase [General function
prediction only].
Length = 592
Score = 291 bits (745), Expect = 8e-90
Identities = 161/488 (32%), Positives = 266/488 (54%), Gaps = 13/488 (2%)
Query: 89 KGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARS 148
+ D V LE++G+T F PG A + AL + IR++L RH +G AEGY R+
Sbjct: 5 RAVDAAVYVLEKEGITTAFGVPGAAINPFYSALRKHGGIRHILARHVEGASHMAEGYTRA 64
Query: 149 -SGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTR 207
+G G+CI TSGP T++++GL A DS+P++ ITGQ PR + + FQ I + +
Sbjct: 65 TAGNIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAK 124
Query: 208 SITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGY 267
++K V + +PR++++AF L SGRPGPVLID+P D+ Q+A ++ + P
Sbjct: 125 PVSKWAVTVREPALVPRVLQQAFHLMRSGRPGPVLIDLPFDV--QVAEIEFDPDMYEP-- 180
Query: 268 MSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLN--SSEELRKFVELTGIPVASTLMG 325
+ + V E+ + ++ ++++P++ GGG +N ++ L++F ELTG+PV TLMG
Sbjct: 181 LPVYKPAATRVQAEKALAMLIQAERPLIVAGGGVINADAAALLQEFAELTGVPVIPTLMG 240
Query: 326 LGSFPGTDELSLQMLGMHGT-VYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVH 384
G P L M+G+ + Y N + SD++ G R+ +R TG +E + K +H
Sbjct: 241 WGCIPDDHPLMAGMVGLQTSHRYGNATLLASDMVFGIGNRWANRHTGSVEVYTEGRKFIH 300
Query: 385 IDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRF-DFSAWREELDEQKVKYP 443
+DI+ +IG+ P + + +D K AL + + G+ AW + Q+ K
Sbjct: 301 VDIEPTQIGRVFCPDLGIVSDAKAALTLLLDVAQEWKKAGKLPCRKAWVADC--QQRKRT 358
Query: 444 LSFKTFEESIP--PQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGL 501
L KT +++P PQ + +++ + T +G Q+ AAQF +PR W+ G
Sbjct: 359 LLRKTHFDNVPVKPQRVYEEMNKAFGRDVCYVTTIGLSQIAAAQFLHVFKPRHWINCGQA 418
Query: 502 GAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGM 561
G +G+ +PAA+G A+P +V I GD F ++ELA K+P +L+NN +LG+
Sbjct: 419 GPLGWTIPAALGVCAADPKRNVVAISGDYDFQFLIEELAVGAQFKIPYIHVLVNNAYLGL 478
Query: 562 VMQWEDRF 569
+ Q + F
Sbjct: 479 IRQAQRAF 486
>gnl|CDD|181502 PRK08611, PRK08611, pyruvate oxidase; Provisional.
Length = 576
Score = 280 bits (718), Expect = 5e-86
Identities = 167/564 (29%), Positives = 273/564 (48%), Gaps = 41/564 (7%)
Query: 88 RKGADILVEALERQGVTDVFAYPGGASMEIHQAL-TRSNNIRNVLPRHEQGGIFAAEGYA 146
K + LV+ L+ G+ V+ PG + + AL + I+ + RHE+ AA YA
Sbjct: 4 IKAGEALVKLLQDWGIDHVYGIPGDSIDAVVDALRKEQDKIKFIQVRHEEVAALAAAAYA 63
Query: 147 RSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVT 206
+ +GK G+C++ GPGA +L++GL DA +D VP++A+ GQV ++GTD FQE + ++
Sbjct: 64 KLTGKIGVCLSIGGPGAIHLLNGLYDAKMDHVPVLALAGQVTSDLLGTDFFQEVNLEKMF 123
Query: 207 RSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDI--QQQLAVPNWNQPIKL 264
+ +N+ ++ +++P IV +A A + VL +P D+ Q+ N
Sbjct: 124 EDVAVYNHQIMSAENLPEIVNQAIRTAYEKKGVAVLT-IPDDLPAQKIKDTTNKTVDTFR 182
Query: 265 PGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLM 324
P P +++ +LI+++KKPV+ G G ++ EEL F E IP+ TL
Sbjct: 183 PT-----VPSPKPKDIKKAAKLINKAKKPVILAGLGAKHAKEELLAFAEKAKIPIIHTLP 237
Query: 325 GLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVH 384
G P SL LG GT A A+ ++DLL+ G + + +AK +
Sbjct: 238 AKGIIPDDHPYSLGNLGKIGTKPAYEAMQEADLLIMVGTNYPYV-----DYLPKKAKAIQ 292
Query: 385 IDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRF------DFSAWREEL--D 436
ID D A IGK +V + D K AL + + + + RF + + W + + D
Sbjct: 293 IDTDPANIGKRYPVNVGLVGDAKKALHQLTENIKHVE-DRRFLEACQENMAKWWKWMEED 351
Query: 437 EQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWL 496
E P+ P+ + + ++ + +A++S VG +W+A++ ++++
Sbjct: 352 ENNASTPIK---------PERVMAAIQKIADDDAVLSVDVGTVTVWSARYLNLGTNQKFI 402
Query: 497 TSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNN 556
S LG MG GLP AI A +A PD + I GDG F M +Q+ T KLPI +++LNN
Sbjct: 403 ISSWLGTMGCGLPGAIAAKIAFPDRQAIAICGDGGFSMVMQDFVTAVKYKLPIVVVVLNN 462
Query: 557 QHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAI 616
Q L + ++E + L D + KFAEACG G +V + +L A
Sbjct: 463 QQLAFI-KYEQQAAGELEYAIDLSD--------MDYAKFAEACGGKGYRVEKAEELDPAF 513
Query: 617 QTMLDTPGPYLLDVIFPHQEHVLP 640
+ L P ++DV LP
Sbjct: 514 EEALAQDKPVIIDVYVDPNAAPLP 537
>gnl|CDD|181337 PRK08266, PRK08266, hypothetical protein; Provisional.
Length = 542
Score = 273 bits (700), Expect = 8e-84
Identities = 161/560 (28%), Positives = 254/560 (45%), Gaps = 42/560 (7%)
Query: 90 GADILVEALERQGVTDVFAYPGGASMEIHQALTRSNN-IRNVLPRHEQGGIFAAEGYARS 148
G + +V L GV VF PG + AL ++ + IR + RHEQ + A GYARS
Sbjct: 6 GGEAIVAGLVAHGVDTVFGLPGAQLYWLFDALYKAGDRIRVIHTRHEQAAGYMAFGYARS 65
Query: 149 SGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQ--ETP-IVEV 205
+G+PG+C GPG N + L A + P++ +TGQ+P +IG E P +
Sbjct: 66 TGRPGVCSVVPGPGVLNAGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPDQLAT 125
Query: 206 TRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLP 265
RS TK + + P +V EAF SGRP PV +++P D+ Q A P+
Sbjct: 126 LRSFTKWAERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWDVFGQRA------PVAAA 179
Query: 266 GYMSRLPK-EPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLM 324
+ P P + LI+ +K P+++VGGG + EE+R+ E+ PV +
Sbjct: 180 PPLRPAPPPAPDPDAIAAAAALIAAAKNPMIFVGGGAAGAGEEIRELAEMLQAPVVAFRS 239
Query: 325 GLGSFPGTDELSLQMLGMHGTVYANYAV-DKSDLLLAFGVRFDDRVTGKLEAFASRAKIV 383
G G L L A Y + ++D+++ G R + + K++
Sbjct: 240 GRGIVSDRHPLGLNFA-------AAYELWPQTDVVIGIGSRLELPTF-RWPWRPDGLKVI 291
Query: 384 HIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDA--EGRFDFSAWREELDEQKVK 441
IDID E+ + +P V++ AD K + L + R R EL E K
Sbjct: 292 RIDIDPTEMRR-LKPDVAIVADAKAGTAALLDALSKAGSKRPSR------RAELRELKAA 344
Query: 442 YPLSFKTFEESIPPQYA-IQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGG 500
+++ PQ + ++ + E + I + Q + + PR ++T G
Sbjct: 345 ARQRI----QAVQPQASYLRAIREALPDDGIFVDELSQVGFASWFAFPVYAPRTFVTCGY 400
Query: 501 LGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLG 560
G +G+G P A+GA VANPD +V I GDG F+ VQELAT + + ++ NN G
Sbjct: 401 QGTLGYGFPTALGAKVANPDRPVVSITGDGGFMFGVQELATAVQHNIGVVTVVFNNNAYG 460
Query: 561 MVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTML 620
V + + R + + L + P+ +K AE+ G+ +V +LRAA++ L
Sbjct: 461 NVRRDQKRRFGGRVVASDLVN--------PDFVKLAESFGVAAFRVDSPEELRAALEAAL 512
Query: 621 DTPGPYLLDVIFPHQEHVLP 640
GP L++V P P
Sbjct: 513 AHGGPVLIEVPVPRGSEASP 532
>gnl|CDD|236312 PRK08617, PRK08617, acetolactate synthase; Reviewed.
Length = 552
Score = 267 bits (686), Expect = 1e-81
Identities = 163/560 (29%), Positives = 260/560 (46%), Gaps = 42/560 (7%)
Query: 85 DQPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEG 144
D+ + GAD++V++L QGV VF PG + AL + ++ RHEQ F A
Sbjct: 2 DKKKYGADLVVDSLINQGVKYVFGIPGAKIDRVFDAL-EDSGPELIVTRHEQNAAFMAAA 60
Query: 145 YARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVE 204
R +GKPG+ + TSGPG +NL +GL A + P+VAI GQV R Q V
Sbjct: 61 IGRLTGKPGVVLVTSGPGVSNLATGLVTATAEGDPVVAIGGQVKRADRLKRTHQSMDNVA 120
Query: 205 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKL 264
+ R ITK++ V D D++ ++ AF A SGRPG + +P+D+ + P ++ I
Sbjct: 121 LFRPITKYSAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQDV---VDAPVTSKAIAP 177
Query: 265 PGYMSRLPK--EPSEVHLEQIVRLISESKKPVLYVG--GGCLNSSEELRKFVELTGIPVA 320
PK S + + LI +K PVL +G + +R+ +E T +PV
Sbjct: 178 ----LSKPKLGPASPEDINYLAELIKNAKLPVLLLGMRASSPEVTAAIRRLLERTNLPVV 233
Query: 321 STLMGLGSFPGTDELSLQMLGMHGTVYANYAVD----KSDLLLAFG---VRFDDRVTGKL 373
T G EL G G ++ N D K+DL++ G + ++ R
Sbjct: 234 ETFQAAGVIS--RELEDHFFGRVG-LFRNQPGDELLKKADLVITIGYDPIEYEPRNWNS- 289
Query: 374 EAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGK--DAEGRFDFSAW 431
A I+HID+ AEI QP + D+ L + L G +
Sbjct: 290 ---EGDATIIHIDVLPAEIDNYYQPERELIGDIAATLDLLAEKLDGLSLSPQSLEILEEL 346
Query: 432 REELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRR 491
R +L+E + P + ++ P I+ L ++ + ++ VG H +W A++++
Sbjct: 347 RAQLEELA-ERPARLEEG--AVHPLRIIRALQDIVTDDTTVTVDVGSHYIWMARYFRSYE 403
Query: 492 PRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKI 551
PR L S G+ +G LP AI AA+ P +V + GDG F+ + EL T KL I
Sbjct: 404 PRHLLFSNGMQTLGVALPWAIAAALVRPGKKVVSVSGDGGFLFSAMELETAVRLKLNIVH 463
Query: 552 LLLNNQHLGMV-MQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKA 610
++ N+ H MV Q E ++ ++ + G + +K+AE+ G G +VT
Sbjct: 464 IIWNDGHYNMVEFQEEMKYGRS--SGVDFGPV--------DFVKYAESFGAKGLRVTSPD 513
Query: 611 DLRAAIQTMLDTPGPYLLDV 630
+L ++ L T GP ++D+
Sbjct: 514 ELEPVLREALATDGPVVIDI 533
>gnl|CDD|236041 PRK07524, PRK07524, hypothetical protein; Provisional.
Length = 535
Score = 266 bits (683), Expect = 3e-81
Identities = 167/557 (29%), Positives = 261/557 (46%), Gaps = 52/557 (9%)
Query: 91 ADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSG 150
+ LV LE GV VF PG ++E+++ L S IR+V PRHEQG F A+GYAR SG
Sbjct: 5 GEALVRLLEAYGVETVFGIPGVHTVELYRGLAGSG-IRHVTPRHEQGAGFMADGYARVSG 63
Query: 151 KPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRM---IGTDAFQETPIVE-VT 206
KPG+C +GPG TN+ + + A DS+P++ I+ V RR G E P +
Sbjct: 64 KPGVCFIITGPGMTNIATAMGQAYADSIPMLVISS-VNRRASLGKGRGKLHELPDQRAMV 122
Query: 207 RSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPG 266
+ ++ ++ +D+P ++ AF + S RP PV I++P D+ A P P
Sbjct: 123 AGVAAFSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLDVLAAPADHLLPAPPTRPA 182
Query: 267 YMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGL 326
P+ L Q ++ +++P++ GGG L ++ LR E PVA T+
Sbjct: 183 -----RPGPAPAALAQAAERLAAARRPLILAGGGALAAAAALRALAERLDAPVALTINAK 237
Query: 327 GSFPGTDELSLQMLGMHGTVYANYA-VDKSDLLLAFGVRF---DDRVTGKLEAFASRAKI 382
G P L LG ++ A A + ++D++LA G D V F ++
Sbjct: 238 GLLPAGHPLL---LGASQSLPAVRALIAEADVVLAVGTELGETDYDVYFD-GGFPLPGEL 293
Query: 383 VHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFS---AWREELDEQK 439
+ IDID ++ +N P +++ D + AL+ + L G+ A + + A R+ L +
Sbjct: 294 IRIDIDPDQLARNYPPALALVGDARAALEALLARLPGQAAAADWGAARVAALRQALRAEW 353
Query: 440 VKYPLSFKTFEESIPPQYAIQVLDELTNGEAII---STGVGQHQMWAAQF-YKYRRPRQW 495
+ ++I L L + AI ST ++A + PR+W
Sbjct: 354 DPLTAAQVALLDTI--------LAALPD--AIFVGDSTQP----VYAGNLYFDADAPRRW 399
Query: 496 LTSG-GLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLL 554
+ G G +G+GLPAAIGAA+ P+ +V + GDG + ELA+ LP+ +LL
Sbjct: 400 FNASTGYGTLGYGLPAAIGAALGAPERPVVCLVGDGGLQFTLPELASAVEADLPLIVLLW 459
Query: 555 NNQHLGMVMQWEDRFYKANRAHTYLG-DPSRESEIFPNMLKFAEACGIPGAQVTRKADLR 613
NN G E R Y R +G DP P+ + A A G +V L+
Sbjct: 460 NNDGYG-----EIRRYMVARDIEPVGVDPYT-----PDFIALARAFGCAAERVADLEQLQ 509
Query: 614 AAIQTMLDTPGPYLLDV 630
AA++ PGP L++V
Sbjct: 510 AALRAAFARPGPTLIEV 526
>gnl|CDD|235700 PRK06112, PRK06112, acetolactate synthase catalytic subunit;
Validated.
Length = 578
Score = 265 bits (679), Expect = 2e-80
Identities = 177/569 (31%), Positives = 265/569 (46%), Gaps = 53/569 (9%)
Query: 90 GADILVEALERQGVTDVFAYPGGASMEIHQALTRSN-NIRNVLPRHEQGGIFAAEGYARS 148
A + AL+R GV +F G S+ L IR + R E G A+GYAR
Sbjct: 16 VAHAIARALKRHGVEQIF----GQSLPSALFLAAEAIGIRQIAYRTENAGGAMADGYARV 71
Query: 149 SGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRS 208
SGK + A +GP AT LV+ LA+AL SVP+VA+ V R +AFQE + + +S
Sbjct: 72 SGKVAVVTAQNGPAATLLVAPLAEALKASVPIVALVQDVNRDQTDRNAFQELDHIALFQS 131
Query: 209 ITKHNYLVLDVDDIPRI---VREAFLLATSGRPGPVLIDVPKDI----QQQLAVPNWNQP 261
TK V V RI V +AF ATSGRPGPV++ +P D+ A P N
Sbjct: 132 CTK---WVRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPADLLTAAAAAPAAPRSNSL 188
Query: 262 IKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGG--CLNSSEELRKFVELTGIPV 319
P + P+ L + L++++++PV+ GGG +S L L G+PV
Sbjct: 189 GHFPLDRTV----PAPQRLAEAASLLAQAQRPVVVAGGGVHISGASAALAALQSLAGLPV 244
Query: 320 ASTLMGLGSFPGTDELSLQMLG--MHGTVYANYA---VDKSDLLLAFGVRFDDRVTGKLE 374
A+T MG G+ T LSL ++G M + V ++D++L G R + T
Sbjct: 245 ATTNMGKGAVDETHPLSLGVVGSLMGPRSPGRHLRDLVREADVVLLVGTRTNQNGTDSWS 304
Query: 375 AFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFD------- 427
+ +A+ +HID+D E+G+N + + + D +L L + L G+D R
Sbjct: 305 LYPEQAQYIHIDVDGEEVGRNYEA-LRLVGDARLTLAALTDALRGRDLAARAGRRAALEP 363
Query: 428 -FSAWREELDEQKVKYPLSFKTFEESIP--PQYAIQVLDELTNGEAIISTGVGQHQMWAA 484
+A RE E LS ++ P P+ + L + G+ I+ +W A
Sbjct: 364 AIAAGREAHREDSAPVALS-----DASPIRPERIMAELQAVLTGDTIVVADASYSSIWVA 418
Query: 485 QFYKYRRPRQ-WLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIK 543
F RR +LT GL +G+G+P AIGA VA P A ++ + GDG F EL T +
Sbjct: 419 NFLTARRAGMRFLTPRGLAGLGWGVPMAIGAKVARPGAPVICLVGDGGFAHVWAELETAR 478
Query: 544 VEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFP-NMLKFAEACGIP 602
+P+ I++LNN LG ++ + G + + A ACG
Sbjct: 479 RMGVPVTIVVLNNGILG---------FQKHAETVKFGTHTDACHFAAVDHAAIARACGCD 529
Query: 603 GAQVTRKADLRAAIQTMLDTPGPYLLDVI 631
G +V A+L A+ + PGP L++VI
Sbjct: 530 GVRVEDPAELAQALAAAMAAPGPTLIEVI 558
>gnl|CDD|180570 PRK06457, PRK06457, pyruvate dehydrogenase; Provisional.
Length = 549
Score = 258 bits (660), Expect = 6e-78
Identities = 167/562 (29%), Positives = 278/562 (49%), Gaps = 48/562 (8%)
Query: 91 ADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSG 150
A++++ LE G+ ++ PG + + A+ R + ++ V RHE+G AA A+ +G
Sbjct: 5 AEVIIRVLEDNGIQRIYGIPGDSIDPLVDAI-RKSKVKYVQVRHEEGAALAASVEAKITG 63
Query: 151 KPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSIT 210
KP C+ TSGPG+ +L++GL DA +D P++A+TGQV MIG D FQE + ++ +
Sbjct: 64 KPSACMGTSGPGSIHLLNGLYDAKMDHAPVIALTGQVESDMIGHDYFQEVNLTKLFDDVA 123
Query: 211 KHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLA--VPNWNQPIKLPGYM 268
N ++++ ++ I+R A A S R G I++P DI ++ + + N + Y
Sbjct: 124 VFNQILINPENAEYIIRRAIREAISKR-GVAHINLPVDILRKSSEYKGSKNTEVGKVKY- 181
Query: 269 SRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLGS 328
+ + LI ES+KPVL +GGG +E+ +F E G P+ TL G G
Sbjct: 182 --------SIDFSRAKELIKESEKPVLLIGGGTRGLGKEINRFAEKIGAPIIYTLNGKGI 233
Query: 329 FPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASR-AKIVHIDI 387
P D + +G+ GT + A+DK+DLL+ G F F ++ AK++ +DI
Sbjct: 234 LPDLDPKVMGGIGLLGTKPSIEAMDKADLLIMLGTSF------PYVNFLNKSAKVIQVDI 287
Query: 388 DSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFK 447
D++ IGK +S + L + ++ +F EEL +K + S
Sbjct: 288 DNSNIGKRLDVDLSYPIPVAEFLN-----IDIEEKSDKF-----YEELKGKKEDWLDSIS 337
Query: 448 TFEES----IPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGA 503
E S + PQ ++ + +A+I T G MW A+ ++ + ++ S LG+
Sbjct: 338 KQENSLDKPMKPQRVAYIVSQKCKKDAVIVTDTGNVTMWTARHFRASGEQTFIFSAWLGS 397
Query: 504 MGFGLPAAIGAAVA-NPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMV 562
MG G+P ++GA+ A ++ GDG F M + EL T K LP+KI++ NN LGM+
Sbjct: 398 MGIGVPGSVGASFAVENKRQVISFVGDGGFTMTMMELITAKKYDLPVKIIIYNNSKLGMI 457
Query: 563 MQWEDRFYKANRAHTYLGDPSRESEIF-PNMLKFAEACGIPGAQVTRKADLRAAIQTMLD 621
++ +G P +++ P+ K AE+ G G ++ + I+ L+
Sbjct: 458 KFEQE----------VMGYPEWGVDLYNPDFTKIAESIGFKGFRLEEPKEAEEIIEEFLN 507
Query: 622 TPGPYLLDVIFPHQEHVLPMIP 643
T GP +LD I E PM P
Sbjct: 508 TKGPAVLDAIVDPNER--PMPP 527
>gnl|CDD|131471 TIGR02418, acolac_catab, acetolactate synthase, catabolic.
Acetolactate synthase (EC 2.2.1.6) combines two
molecules of pyruvate to yield 2-acetolactate with the
release of CO2. This reaction may be involved in either
valine biosynthesis (biosynthetic) or conversion of
pyruvate to acetoin and possibly to 2,3-butanediol
(catabolic). The biosynthetic type, described by
TIGR00118, is also capable of forming
acetohydroxybutyrate from pyruvate and 2-oxobutyrate for
isoleucine biosynthesis. The family described here, part
of the same larger family of thiamine
pyrophosphate-dependent enzymes (pfam00205, pfam02776)
is the catabolic form, generally found associated with
in species with acetolactate decarboxylase and usually
found in the same operon. The model may not encompass
all catabolic acetolactate synthases, but rather one
particular clade in the larger TPP-dependent enzyme
family [Energy metabolism, Fermentation].
Length = 539
Score = 250 bits (641), Expect = 3e-75
Identities = 164/560 (29%), Positives = 265/560 (47%), Gaps = 52/560 (9%)
Query: 90 GADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS 149
GAD++V+ LE QGV VF PG + AL I ++ RHEQ F A+ R +
Sbjct: 1 GADLVVDQLENQGVRYVFGIPGAKIDRVFDALEDKG-IELIVVRHEQNAAFMAQAVGRIT 59
Query: 150 GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSI 209
GKPG+ + TSGPG +NLV+GLA A + P+VAI GQV R + Q V + R I
Sbjct: 60 GKPGVALVTSGPGCSNLVTGLATANSEGDPVVAIGGQVKRADLLKLTHQSMDNVALFRPI 119
Query: 210 TKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMS 269
TK++ V D D + +V AF A SG+PG + +P+D+ + P + I
Sbjct: 120 TKYSAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDV---VDSPVSVKAIPASYA-- 174
Query: 270 RLPK--EPSEVHLEQIVRLISESKKPVLYVG--GGCLNSSEELRKFVELTGIPVASTLMG 325
PK + ++++ I +K PVL +G ++E +R+ ++ T +PV T G
Sbjct: 175 --PKLGAAPDDAIDEVAEAIQNAKLPVLLLGLRASSPETTEAVRRLLKKTQLPVVETFQG 232
Query: 326 LGSFPGTDELSLQMLGMHGTVYANYAVD----KSDLLLAFG---VRFDDRVTGKLEAFAS 378
G+ + EL G G ++ N D ++DL++ G + ++ R +
Sbjct: 233 AGAV--SRELEDHFFGRVG-LFRNQPGDRLLKQADLVITIGYDPIEYEPRNWNS----EN 285
Query: 379 RAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGG-----KDAEGRFDFSAWRE 433
A IVHID++ A+I N QP + + D+ L + + G D RE
Sbjct: 286 DATIVHIDVEPAQIDNNYQPDLELVGDIASTLDLLAERIPGYELPPDALAILEDLKQQRE 345
Query: 434 ELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPR 493
LD P + K + P I+ + + + ++ +G H +W A++++ R R
Sbjct: 346 ALDR----VPATLKQAH--LHPLEIIKAMQAIVTDDVTVTVDMGSHYIWMARYFRSYRAR 399
Query: 494 QWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILL 553
L S G+ +G LP AIGAA+ P+ +V + GDG F+ + EL T KL I ++
Sbjct: 400 HLLISNGMQTLGVALPWAIGAALVRPNTKVVSVSGDGGFLFSSMELETAVRLKLNIVHII 459
Query: 554 LNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEI-FPNM--LKFAEACGIPGAQVTRKA 610
N+ MV E+ Y+ R S + F + +K+AE+ G G +V
Sbjct: 460 WNDNGYNMVEFQEEMKYQ------------RSSGVDFGPIDFVKYAESFGAKGLRVESPD 507
Query: 611 DLRAAIQTMLDTPGPYLLDV 630
L ++ ++ GP ++D+
Sbjct: 508 QLEPTLRQAMEVEGPVVVDI 527
>gnl|CDD|180820 PRK07064, PRK07064, hypothetical protein; Provisional.
Length = 544
Score = 243 bits (622), Expect = 2e-72
Identities = 149/551 (27%), Positives = 242/551 (43%), Gaps = 40/551 (7%)
Query: 90 GADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS 149
+++ LE+ GV F +M I A+ R IR V R E G + A+ +AR S
Sbjct: 5 VGELIAAFLEQCGVKTAFGVISIHNMPILDAIGRRGKIRFVPARGEAGAVNMADAHARVS 64
Query: 150 GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDA--FQETP-IVEVT 206
G G+ + ++G GA N L +AL PL+ ITGQ+ + D E P + +
Sbjct: 65 GGLGVALTSTGTGAGNAAGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTML 124
Query: 207 RSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQL-AVPNWNQPIKLP 265
R+++K + V + +REA +A + GPV +++P DIQ +P+ P+ +
Sbjct: 125 RAVSKAAFRVRSAETALATIREAVRVALTAPTGPVSVEIPIDIQAAEIELPDDLAPVHVA 184
Query: 266 GYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMG 325
+P EP + ++ ++ +++P+L++GGG ++ E+++ V+L G V ++ G
Sbjct: 185 -----VP-EPDAAAVAELAERLAAARRPLLWLGGGARHAGAEVKRLVDL-GFGVVTSTQG 237
Query: 326 LGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHI 385
G P SL V A Y DLLL G R T K A ++ +
Sbjct: 238 RGVVPEDHPASLGAFNNSAAVEALYK--TCDLLLVVGSRLRGNETLKYS-LALPRPLIRV 294
Query: 386 DIDSAEIGKNKQPHVSVCADLKLALKGINRILGGK---DAEGRFDFSAWREELDEQKVKY 442
D D+A G+ + V D L + L G+ D D A RE K
Sbjct: 295 DADAAADGRGYPNDLFVHGDAARVLARLADRLEGRLSVDPAFAADLRAAREAAVADLRKG 354
Query: 443 PLSFKTFEESIP---PQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSG 499
+ +++ P+ V D + ST W + PR + +
Sbjct: 355 LGPYAKLVDALRAALPRDGNWVRDVTISN----ST-------WGNRLLPIFEPRANVHAL 403
Query: 500 GLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHL 559
G G +G GL AIGAA+A P V + GDG ++N+ ELAT E + I+L+N+
Sbjct: 404 G-GGIGQGLAMAIGAALAGPGRKTVGLVGDGGLMLNLGELATAVQENANMVIVLMNDGGY 462
Query: 560 GMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTM 619
G++ +D Y R + L P+ A + G+P +VT D A ++
Sbjct: 463 GVIRNIQDAQYGGRRYYVELHT--------PDFALLAASLGLPHWRVTSADDFEAVLREA 514
Query: 620 LDTPGPYLLDV 630
L GP L++V
Sbjct: 515 LAKEGPVLVEV 525
>gnl|CDD|236042 PRK07525, PRK07525, sulfoacetaldehyde acetyltransferase; Validated.
Length = 588
Score = 239 bits (613), Expect = 1e-70
Identities = 155/562 (27%), Positives = 246/562 (43%), Gaps = 60/562 (10%)
Query: 94 LVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPG 153
VE L+ G+T F G A M+ + IR + HEQ A+GY R +G+ G
Sbjct: 12 FVETLQAHGITHAFGIIGSAFMDASDLFPPAG-IRFIDVAHEQNAGHMADGYTRVTGRMG 70
Query: 154 ICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHN 213
+ I +GPG TN V+ +A A P+V +T Q + IG FQE + + +TK+
Sbjct: 71 MVIGQNGPGITNFVTAVATAYWAHTPVVLVTPQAGTKTIGQGGFQEAEQMPMFEDMTKYQ 130
Query: 214 YLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIK--LPGYMSRL 271
V D + ++ F A GP I++P+D + I +P + RL
Sbjct: 131 EEVRDPSRMAEVLNRVFDKAKRES-GPAQINIPRDY--------FYGVIDVEIPQPV-RL 180
Query: 272 PKEP-SEVHLEQIVRLISESKKPVLYVGGGCLNSS--EELRKFVELTGIPVASTLMGLGS 328
+ E L + L+SE+K PV+ G G + S EE + E PVA + +
Sbjct: 181 ERGAGGEQSLAEAAELLSEAKFPVILSGAGVVLSDAIEECKALAERLDAPVACGYLHNDA 240
Query: 329 FPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKL-----EAFASRAKIV 383
FPG+ L + LG +G+ A + K+D++LA G R + G L + + AKI+
Sbjct: 241 FPGSHPLWVGPLGYNGSKAAMELIAKADVVLALGTRLN--PFGTLPQYGIDYWPKDAKII 298
Query: 384 HIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDA-----EGRFDF-----SAWRE 433
+DI+ IG K+ V +C D K + + L + A E R SAW +
Sbjct: 299 QVDINPDRIGLTKKVSVGICGDAKAVARELLARLAERLAGDAGREERKALIAAEKSAWEQ 358
Query: 434 ELDE---QKVKYPLSFKTFEESIPPQY--AIQVLDELTNG---EAIISTGVGQHQMWAAQ 485
EL + + + P Y Q L E+ +AI+ST +G + A
Sbjct: 359 ELSSWDHEDDDPGTDWNEEARARKPDYMHPRQALREIQKALPEDAIVSTDIGNNCSIANS 418
Query: 486 FYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVE 545
+ ++ + R++L G G G+ PA IGA +A PD +V GDG++ +++ E+ T
Sbjct: 419 YLRFEKGRKYLAPGSFGNCGYAFPAIIGAKIACPDRPVVGFAGDGAWGISMNEVMTAVRH 478
Query: 546 KLPIKILLLNNQHLGMVMQW--EDR----FYKANRAHTYLGDPSRESEIFPNMLKFAEAC 599
P+ ++ N QW E + FY T L + + AEA
Sbjct: 479 NWPVTAVVFRNY------QWGAEKKNQVDFYNNRFVGTELDNN-------VSYAGIAEAM 525
Query: 600 GIPGAQVTRKADLRAAIQTMLD 621
G G V + +L A++ +D
Sbjct: 526 GAEGVVVDTQEELGPALKRAID 547
>gnl|CDD|132497 TIGR03457, sulphoacet_xsc, sulfoacetaldehyde acetyltransferase.
Members of this protein family are sulfoacetaldehyde
acetyltransferase, an enzyme of taurine utilization.
Taurine, or 2-aminoethanesulfonate, can be used by
bacteria as a source of carbon, nitrogen, and sulfur
[Central intermediary metabolism, Other].
Length = 579
Score = 236 bits (604), Expect = 1e-69
Identities = 153/554 (27%), Positives = 250/554 (45%), Gaps = 45/554 (8%)
Query: 94 LVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPG 153
VE L GVT F G A M+ + IR + HEQG A+G+AR +G+
Sbjct: 8 FVEVLVANGVTHAFGIMGSAFMDAMDLFPPAG-IRFIPVVHEQGAGHMADGFARVTGRMS 66
Query: 154 ICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHN 213
+ I +GPG TN V+ +A A P+V +T + + IG FQE + + + TK+
Sbjct: 67 MVIGQNGPGVTNCVTAIAAAYWAHTPVVIVTPEAGTKTIGLGGFQEADQLPMFQEFTKYQ 126
Query: 214 YLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIK----LPGYMS 269
V + ++ F A GP +++P+D + I P +
Sbjct: 127 GHVRHPSRMAEVLNRCFERAWREM-GPAQLNIPRDY--------FYGEIDVEIPRPVRLD 177
Query: 270 RLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTLMGLG 327
R + L Q RL++E+K PV+ GGG + ++ EE + E G PV ++ +
Sbjct: 178 RGAGGATS--LAQAARLLAEAKFPVIISGGGVVMGDAVEECKALAERLGAPVVNSYLHND 235
Query: 328 SFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVR---FDDRVTGKLEAFASRAKIVH 384
SFP + L + LG G+ A + +D++LA G R F ++ + AKI+
Sbjct: 236 SFPASHPLWVGPLGYQGSKAAMKLISDADVVLALGTRLGPFGTLPQYGIDYWPKNAKIIQ 295
Query: 385 IDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGK--DA--EGRFDF-----SAWREEL 435
+D ++ IG K+ V +C D K A I + L GK DA R SAW +EL
Sbjct: 296 VDANAKMIGLVKKVTVGICGDAKAAAAEILQRLAGKAGDANRAERKAKIQAERSAWEQEL 355
Query: 436 DE-QKVKYPLSFKTFEES-------IPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFY 487
E + P S E + P+ ++ L++ +AI+ST +G A +
Sbjct: 356 SEMTHERDPFSLDMIVEQRQEEGNWLHPRQVLRELEKAMPEDAIVSTDIGNINSVANSYL 415
Query: 488 KYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKL 547
++ +PR++L G G+ P IGA +A PD +V GDG++ M++ E+ T +
Sbjct: 416 RFEKPRKFLAPMSFGNCGYAFPTIIGAKIAAPDRPVVAYAGDGAWGMSMNEIMTAVRHDI 475
Query: 548 PIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVT 607
P+ ++ N+ G + + FY T L ESE+ + A+A G G V
Sbjct: 476 PVTAVVFRNRQWGAEKKNQVDFYNNRFVGTEL-----ESEL--SFAGIADAMGAKGVVVD 528
Query: 608 RKADLRAAIQTMLD 621
+ D+ A++ +
Sbjct: 529 KPEDVGPALKKAIA 542
>gnl|CDD|132918 cd07035, TPP_PYR_POX_like, Pyrimidine (PYR) binding domain of POX
and related proteins. Thiamine pyrophosphate (TPP
family), pyrimidine (PYR) binding domain of pyruvate
oxidase (POX) and related protiens subfamily. The PYR
domain is found in many key metabolic enzymes which use
TPP (also known as thiamine diphosphate) as a cofactor.
TPP binds in the cleft formed by a PYR domain and a PP
domain. The PYR domain, binds the aminopyrimidine ring
of TPP, the PP domain binds the diphosphate residue. A
polar interaction between the conserved glutamate of the
PYR domain and the N1' of the TPP aminopyrimidine ring
is shared by most TPP-dependent enzymes, and
participates in the activation of TPP. For glyoxylate
carboligase, which belongs to this subfamily, but lacks
this conserved glutamate, the rate of the initial TPP
activation step is reduced but the ensuing steps of the
enzymic reaction proceed efficiently. The PYR and PP
domains have a common fold, but do not share strong
sequence conservation. The PP domain is not included in
this sub-family. Most TPP-dependent enzymes have the PYR
and PP domains on the same subunit although these
domains can be alternatively arranged in the primary
structure. TPP-dependent enzymes are multisubunit
proteins, the smallest catalytic unit being a
dimer-of-active sites, for many the active sites lie
between PP and PYR domains on different subunits. POX
decarboxylates pyruvate, producing hydrogen peroxide and
the energy-storage metabolite acetylphosphate. This
subfamily includes pyruvate decarboxylase (PDC) and
indolepyruvate decarboxylase (IPDC). PDC catalyzes the
conversion of pyruvate to acetaldehyde and CO2 in
alcoholic fermentation. IPDC plays a role in the
indole-3-pyruvic acid (IPA) pathway in plants and
various plant-associated bacteria, it catalyzes the
decarboxylation of IPA to IAA. This subfamily also
includes the large catalytic subunit of acetohydroxyacid
synthase (AHAS). AHAS catalyzes the condensation of two
molecules of pyruvate to give the acetohydroxyacid,
2-acetolactate, a precursor of the branched chain amino
acids, valine and leucine. AHAS also catalyzes the
condensation of pyruvate and 2-ketobutyrate to form
2-aceto-2-hydroxybutyrate in isoleucine biosynthesis.
Methanococcus jannaschii sulfopyruvate decarboxylase
(MjComDE) and phosphonopyruvate decarboxylase (PpyrDc)
also belong to this subfamily. PpyrDc is a homotrimeric
enzyme having the PP and PYR domains tandemly arranged
on the same subunit. It functions in the biosynthesis of
C-P compounds such as bialaphos tripeptide in
Streptomyces hygroscopicus. MjComDE is a dodecamer
having the PYR and PP domains on different subunits, it
has six alpha (PYR/ComD) subunits and six beta (PP/ComE)
subunits. MjComDE catalyzes the decarboxylation of
sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M
pathway.
Length = 155
Score = 215 bits (551), Expect = 6e-67
Identities = 85/156 (54%), Positives = 107/156 (68%), Gaps = 1/156 (0%)
Query: 92 DILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGK 151
D LVEAL+ +GV VF PGGA + + AL RS IR +L RHEQG + A+GYAR++GK
Sbjct: 1 DALVEALKAEGVDHVFGVPGGAILPLLDALARSG-IRYILVRHEQGAVGMADGYARATGK 59
Query: 152 PGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITK 211
PG+ + TSGPG TN V+GLA+A LDS+PL+ ITGQ P G AFQE V + R ITK
Sbjct: 60 PGVVLVTSGPGLTNAVTGLANAYLDSIPLLVITGQRPTAGEGRGAFQEIDQVALFRPITK 119
Query: 212 HNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPK 247
Y V ++IP +R AF +A SGRPGPV +D+PK
Sbjct: 120 WAYRVTSPEEIPEALRRAFRIALSGRPGPVALDLPK 155
>gnl|CDD|181661 PRK09124, PRK09124, pyruvate dehydrogenase; Provisional.
Length = 574
Score = 227 bits (580), Expect = 4e-66
Identities = 162/565 (28%), Positives = 257/565 (45%), Gaps = 48/565 (8%)
Query: 91 ADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSG 150
AD + + LE+ GV ++ G + + +L R I + RHE+ FAA A+ +G
Sbjct: 6 ADYIAKTLEQAGVKRIWGVTGDSLNGLSDSLRRMGTIEWMHTRHEEVAAFAAGAEAQLTG 65
Query: 151 KPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSIT 210
+ +C + GPG +L++GL D + VP++AI +P IG+ FQET E+ R +
Sbjct: 66 ELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECS 125
Query: 211 KHNYLVLDVDDIPRIVREAFLLATSGR-------PGPV-LIDVPKDIQQQLAVPNWNQPI 262
+ LV + + +PR++ A A R PG V L P+ A P+W
Sbjct: 126 HYCELVSNPEQLPRVLAIAMRKAILNRGVAVVVLPGDVALKPAPER-----ATPHWYHA- 179
Query: 263 KLPGYMSRLPK-EPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVAS 321
P P+E L ++ L++ S L G GC + +EL E P+
Sbjct: 180 -------PQPVVTPAEEELRKLAALLNGSSNITLLCGSGCAGAHDELVALAETLKAPIVH 232
Query: 322 TLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAK 381
L G + + M G+ G +A+ D LL G F R + + + AK
Sbjct: 233 ALRGKEHVEYDNPYDVGMTGLIGFSSGYHAMMNCDTLLMLGTDFPYR-----QFYPTDAK 287
Query: 382 IVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFD-----FSAWREELD 436
I+ IDI+ +G+ + + D+K L + +L K D + R+ LD
Sbjct: 288 IIQIDINPGSLGRRSPVDLGLVGDVKATLAALLPLLEEKTDRKFLDKALEHYRKARKGLD 347
Query: 437 EQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWL 496
+ V + I PQY + + E +AI + VG +WAA++ K R+ L
Sbjct: 348 DLAVPSDGG-----KPIHPQYLARQISEFAADDAIFTCDVGTPTVWAARYLKMNGKRRLL 402
Query: 497 TSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNN 556
S G+M +P A+GA A+P +V + GDG F M + + ++ KLP+KI++ NN
Sbjct: 403 GSFNHGSMANAMPQALGAQAAHPGRQVVALSGDGGFSMLMGDFLSLVQLKLPVKIVVFNN 462
Query: 557 QHLGMV-MQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAA 615
LG V M+ +A YL D + P+ AEACGI G +V + ++L A
Sbjct: 463 SVLGFVAMEM--------KAGGYLTDGTDLHN--PDFAAIAEACGITGIRVEKASELDGA 512
Query: 616 IQTMLDTPGPYLLDVIFPHQEHVLP 640
+Q GP L+DV+ QE +P
Sbjct: 513 LQRAFAHDGPALVDVVTAKQELAMP 537
>gnl|CDD|217224 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal
TPP binding domain.
Length = 172
Score = 211 bits (539), Expect = 6e-65
Identities = 78/168 (46%), Positives = 107/168 (63%), Gaps = 1/168 (0%)
Query: 88 RKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYAR 147
GAD L EAL+ GV VF PG + + + AL +S IR VL RHEQG FAA+GYAR
Sbjct: 1 MTGADALAEALKALGVDHVFGVPGSSILPLLDALAKSPGIRYVLTRHEQGAGFAADGYAR 60
Query: 148 SSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQ-ETPIVEVT 206
++GKPG+ + TSGPGATN ++GLA+A +D +P++ I+GQVP +G Q E + +
Sbjct: 61 ATGKPGVVLVTSGPGATNALTGLANAYVDGIPVLVISGQVPTSDLGRGGLQEELDQLALF 120
Query: 207 RSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLA 254
R +TK V D+IP + AF A SGRPGPV +++P D+Q +
Sbjct: 121 RPVTKWAERVTSPDEIPEALDRAFRAALSGRPGPVYLELPLDVQLEEV 168
>gnl|CDD|217223 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal
TPP binding domain.
Length = 151
Score = 204 bits (521), Expect = 1e-62
Identities = 70/156 (44%), Positives = 94/156 (60%), Gaps = 5/156 (3%)
Query: 475 GVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIM 534
+G HQMWAA++Y++R PR++LTSGGLG MG+GLPAAIGA +A PD +V I GDG F M
Sbjct: 1 DIGCHQMWAARYYRFRPPRRYLTSGGLGTMGYGLPAAIGAKLARPDRPVVAIAGDGGFQM 60
Query: 535 NVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLK 594
N+QELAT LPI +++LNN GM + F + P + + K
Sbjct: 61 NLQELATAVRYNLPITVVVLNNGGYGMTRGQQTPFGGGRYSG-----PDGKDLPPVDFAK 115
Query: 595 FAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDV 630
AEA G GA+V +L A++ L+ GP L+DV
Sbjct: 116 LAEAYGAKGARVESPEELEEALKEALEHDGPALIDV 151
>gnl|CDD|213733 TIGR02720, pyruv_oxi_spxB, pyruvate oxidase. Members of this
family are examples of pyruvate oxidase (EC 1.2.3.3), an
enzyme with FAD and TPP as cofactors that catalyzes the
reaction pyruvate + phosphate + O2 + H2O = acetyl
phosphate + CO2 + H2O2. It should not be confused with
pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in
E. coli PoxB, although the E. coli enzyme is closely
homologous and has pyruvate oxidase as an alternate name
[Energy metabolism, Aerobic].
Length = 575
Score = 212 bits (540), Expect = 2e-60
Identities = 145/557 (26%), Positives = 244/557 (43%), Gaps = 36/557 (6%)
Query: 90 GADILVEALERQGVTDVFAYPGGASMEIHQALT-RSNNIRNVLPRHEQGGIFAAEGYARS 148
+ +++ LE GV ++ PGG+ AL+ + I + RHE+ G AA A+
Sbjct: 1 ASAAVLKVLEAWGVDHIYGIPGGSFNSTMDALSAERDRIHYIQVRHEEVGALAAAADAKL 60
Query: 149 SGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRS 208
+GK G+C ++GPGAT+L++GL DA D VP++A+ GQVP + D FQE +
Sbjct: 61 TGKIGVCFGSAGPGATHLLNGLYDAKEDHVPVLALVGQVPTTGMNMDTFQEMNENPIYAD 120
Query: 209 ITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQ-QQLAVPNWNQ---PIKL 264
+ +N + + +P ++ EA A + G ++ +P D Q++ ++ +
Sbjct: 121 VAVYNRTAMTAESLPHVIDEAIRRAYA-HNGVAVVTIPVDFGWQEIPDNDYYASSVSYQT 179
Query: 265 PGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLM 324
P P + + V+ + +++PV+Y G G + EEL E IP+ ST +
Sbjct: 180 PLL-----PAPDVEAVTRAVQTLKAAERPVIYYGIGARKAGEELEALSEKLKIPLISTGL 234
Query: 325 GLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVH 384
G L AN A+ ++DL+L G + +AF + +
Sbjct: 235 AKGIIEDRYPAYLGSAYRVAQKPANEALFQADLVLFVGNNYP--FAEVSKAFKNTKYFIQ 292
Query: 385 IDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQK--VKY 442
IDID A++GK ++V AD K AL I E R W+ + K Y
Sbjct: 293 IDIDPAKLGKRHHTDIAVLADAKKALAAIL-----AQVEPRESTPWWQANVANVKNWRAY 347
Query: 443 PLSFKTFEES-IPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGL 501
S + E + + ++++ +AI S VG + + + K +W+TS
Sbjct: 348 LASLEDKTEGPLQAYQVYRAINKIAEDDAIYSIDVGDININSNRHLKMTPKNKWITSNLF 407
Query: 502 GAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGM 561
MG G+P AI A + PD + ++ GDG+F M +Q+L T LP+ ++ +N G
Sbjct: 408 ATMGVGVPGAIAAKLNYPDRQVFNLAGDGAFSMTMQDLLTQVQYHLPVINIVFSNCTYGF 467
Query: 562 VMQWEDRFYKANRAHTYLGDPSRESEIFPNM--LKFAEACGIPGAQVTRKADLRAAIQT- 618
+ +D N+ D F + K AE G G +V + L A +
Sbjct: 468 I---KDEQEDTNQ-PLIGVD-------FNDADFAKIAEGVGAVGFRVNKIEQLPAVFEQA 516
Query: 619 -MLDTPGPYLLDVIFPH 634
+ P L+D
Sbjct: 517 KAIKQGKPVLIDAKITG 533
>gnl|CDD|180614 PRK06546, PRK06546, pyruvate dehydrogenase; Provisional.
Length = 578
Score = 210 bits (536), Expect = 8e-60
Identities = 147/549 (26%), Positives = 248/549 (45%), Gaps = 34/549 (6%)
Query: 91 ADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSG 150
A+ LVE L GV ++ G + I A+ R+ I V RHE+ FAA A+ +G
Sbjct: 6 AEQLVEQLVAAGVKRIYGIVGDSLNPIVDAVRRTGGIEWVHVRHEEAAAFAAAAEAQLTG 65
Query: 151 KPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSIT 210
K +C + GPG +L++GL DA P++AI +P IG+ FQET + +
Sbjct: 66 KLAVCAGSCGPGNLHLINGLYDAHRSGAPVLAIASHIPSAQIGSGFFQETHPDRLFVECS 125
Query: 211 KHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSR 270
+ +V + PR++ A + G ++ +P DI + A R
Sbjct: 126 GYCEMVSSAEQAPRVLHSA-IQHAVAGGGVSVVTLPGDIADEPAP---EGFAPSVISPRR 181
Query: 271 LPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLGSFP 330
P + + I+E+KK L+ G G + E+ E PV +L G
Sbjct: 182 PTVVPDPAEVRALADAINEAKKVTLFAGAGVRGAHAEVLALAEKIKAPVGHSLRGKEWIQ 241
Query: 331 GTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSA 390
+ + M G+ G A+ A+ ++DLL+ G F + F + +DID
Sbjct: 242 YDNPFDVGMSGLLGYGAAHEAMHEADLLILLGTDF------PYDQFLPDVRTAQVDIDPE 295
Query: 391 EIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFKT-- 448
+G+ + ++V D+ ++ + ++ K + RF ++ +K++ + T
Sbjct: 296 HLGRRTRVDLAVHGDVAETIRALLPLVKEKT-DRRFLDRMLKKH--ARKLEKVVGAYTRK 352
Query: 449 FEESIP--PQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGF 506
E+ P P+Y +LDEL +A+ + G +WAA++ R+ + S G+M
Sbjct: 353 VEKHTPIHPEYVASILDELAADDAVFTVDTGMCNVWAARYITPNGRRRVIGSFRHGSMAN 412
Query: 507 GLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMV---M 563
LP AIGA +A+P ++ + GDG M + EL T+K+ LP+K+++ NN LGMV M
Sbjct: 413 ALPHAIGAQLADPGRQVISMSGDGGLSMLLGELLTVKLYDLPVKVVVFNNSTLGMVKLEM 472
Query: 564 QWEDRFYKANRAHTYLGDPSRESEIFP-NMLKFAEACGIPGAQVTRKADLRAAIQTMLDT 622
+ G P ++ P + A A GI +V D+R A++
Sbjct: 473 LVD-------------GLPDFGTDHPPVDYAAIAAALGIHAVRVEDPKDVRGALREAFAH 519
Query: 623 PGPYLLDVI 631
PGP L+DV+
Sbjct: 520 PGPALVDVV 528
>gnl|CDD|235718 PRK06154, PRK06154, hypothetical protein; Provisional.
Length = 565
Score = 201 bits (513), Expect = 1e-56
Identities = 151/568 (26%), Positives = 243/568 (42%), Gaps = 48/568 (8%)
Query: 83 APDQPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAA 142
A + K A+ + E L+ +GV +F +P + A IR V+ R E+ + A
Sbjct: 15 AEAKTMKVAEAVAEILKEEGVELLFGFPVNELFDAAAAA----GIRPVIARTERVAVHMA 70
Query: 143 EGYAR-SSGKP-GICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQET 200
+GYAR +SG+ G+ GPGA N G+A A DSVP++ + PR E+
Sbjct: 71 DGYARATSGERVGVFAVQYGPGAENAFGGVAQAYGDSVPVLFLPTGYPRGSTDVAPNFES 130
Query: 201 PIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQ 260
+ R ITK V D++P ++R AF +GRPGPV++++P D+ +
Sbjct: 131 --LRNYRHITKWCEQVTLPDEVPELMRRAFTRLRNGRPGPVVLELPVDV--------LAE 180
Query: 261 PIKLPGYMSRLPKE----PSEVHLEQIVRLISESKKPVLYVGGGCLNSS--EELRKFVEL 314
+ R + V + + L+ +++PV+Y G G L + EL++ EL
Sbjct: 181 ELDELPLDHRPSRRSRPGADPVEVVEAAALLLAAERPVIYAGQGVLYAQATPELKELAEL 240
Query: 315 TGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLE 374
IPV +TL G +FP L+L G + + ++D+L G G
Sbjct: 241 LEIPVMTTLNGKSAFPEDHPLALGSGGRARPATVAHFLREADVLFGIGCSLTRSYYGL-- 298
Query: 375 AFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREE 434
I+H +D A++ K+ + D L LK + L + R E
Sbjct: 299 PMPEGKTIIHSTLDDADLNKDYPIDHGLVGDAALVLKQMIEELRRRVGPDRGRAQQVAAE 358
Query: 435 LDEQKVKYPLSF--KTFEESIP--PQYAIQVLDE-LTNGEAIISTGVGQHQMWAAQFYKY 489
++ + + + K +S P P + L + II+ G + + FY
Sbjct: 359 IEAVRAAWLAKWMPKLTSDSTPINPYRVVWELQHAVDIKTVIITHDAGSPRDQLSPFYVA 418
Query: 490 RRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPI 549
RP +L G +G+GL A+GA +A PDA+++++ GD +F M + T E++PI
Sbjct: 419 SRPGSYLGWGKTTQLGYGLGLAMGAKLARPDALVINLWGDAAFGMTGMDFETAVRERIPI 478
Query: 550 KILLLNNQHLGM---VMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQV 606
+LLNN +G VM Y+A I + A A G G +V
Sbjct: 479 LTILLNNFSMGGYDKVMPVSTTKYRATD-------------ISGDYAAIARALGGYGERV 525
Query: 607 TRKADLRAAIQTML---DTPGPYLLDVI 631
L A+ L P LL+VI
Sbjct: 526 EDPEMLVPALLRALRKVKEGTPALLEVI 553
>gnl|CDD|215786 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central
domain. The central domain of TPP enzymes contains a
2-fold Rossman fold.
Length = 136
Score = 185 bits (471), Expect = 1e-55
Identities = 71/136 (52%), Positives = 90/136 (66%), Gaps = 2/136 (1%)
Query: 280 LEQIVRLISESKKPVLYVGGGCLNS--SEELRKFVELTGIPVASTLMGLGSFPGTDELSL 337
+++ L++ +K+PV+ GGG S SEELR E GIPV +TLMG G+FP L L
Sbjct: 1 IDKAAELLASAKRPVILAGGGVRRSGASEELRALAEKLGIPVVTTLMGKGAFPEDHPLYL 60
Query: 338 QMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQ 397
MLGMHGT AN A++++DL+LA G RFDDR TG L FA AKI+HIDID AEIGKN
Sbjct: 61 GMLGMHGTPAANEALEEADLVLAIGARFDDRGTGSLPEFAPDAKIIHIDIDPAEIGKNYP 120
Query: 398 PHVSVCADLKLALKGI 413
V + D K AL+ +
Sbjct: 121 VDVPIVGDAKEALEAL 136
>gnl|CDD|235629 PRK05858, PRK05858, hypothetical protein; Provisional.
Length = 542
Score = 194 bits (494), Expect = 3e-54
Identities = 144/556 (25%), Positives = 234/556 (42%), Gaps = 36/556 (6%)
Query: 84 PDQPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAE 143
P Q + L+ GV +F GG ++ R IR + RHEQ FAAE
Sbjct: 1 PAQTGHAGRLAARRLKAHGVDTMFTLSGGHLFPLYDG-AREEGIRLIDVRHEQTAAFAAE 59
Query: 144 GYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIV 203
+A+ + PG+ + T+GPG TN +S +A A + PLV + G+ P G + QE V
Sbjct: 60 AWAKLTRVPGVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLGGRAPALRWGMGSLQEIDHV 119
Query: 204 EVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIK 263
+TK ++ R+V +A A + GPV +D P D +
Sbjct: 120 PFVAPVTKFAATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMD-----HAFSMADDDG 174
Query: 264 LPGYMSRLPKEPSE--VHLEQIVRLISESKKPVLYVGGGC-LNSSEE-LRKFVELTGIPV 319
PG ++ LP P+ L + L++E+++PV+ G +E L + E GIPV
Sbjct: 175 RPGALTELPAGPTPDPDALARAAGLLAEAQRPVIMAGTDVWWGHAEAALLRLAEELGIPV 234
Query: 320 ASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASR 379
MG G P L+ + A+ ++D++L GV D R+ + F
Sbjct: 235 LMNGMGRGVVPADHPLAF-------SRARGKALGEADVVLVVGVPMDFRLGFGV--FGGT 285
Query: 380 AKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREEL---- 435
A++VH+D + ++ + DL L + R D W EEL
Sbjct: 286 AQLVHVDDAPPQRAHHRPVAAGLYGDLSAILSAL-----AGAGGDRTDHQGWIEELRTAE 340
Query: 436 DEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQW 495
+ + + I P L L + +AI+ G +A ++ RP W
Sbjct: 341 TAARARDAAELADDRDPIHPMRVYGELAPLLDRDAIVIGDGGDFVSYAGRYIDPYRPGCW 400
Query: 496 LTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLN 555
L G G +G G A+ A +A P +V + GDG+F ++ ++ T+ LP+ ++ N
Sbjct: 401 LDPGPFGCLGTGPGYALAARLARPSRQVVLLQGDGAFGFSLMDVDTLVRHNLPVVSVIGN 460
Query: 556 NQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAA 615
N G+ + Y + A L +R E+ A G G VT A+L A
Sbjct: 461 NGIWGLEKHPMEALYGYDVAAD-LRPGTRYDEV-------VRALGGHGELVTVPAELGPA 512
Query: 616 IQTMLDTPGPYLLDVI 631
++ + PYL++V+
Sbjct: 513 LERAFASGVPYLVNVL 528
>gnl|CDD|181344 PRK08273, PRK08273, thiamine pyrophosphate protein; Provisional.
Length = 597
Score = 188 bits (479), Expect = 9e-52
Identities = 164/567 (28%), Positives = 257/567 (45%), Gaps = 54/567 (9%)
Query: 91 ADILVEALERQGVTDVFAYPGGASMEIHQALTRSNN-IRNVLPRHEQGGIFAAEGYARSS 149
AD ++E L GV VF YPG + AL R+++ V RHE+ F A +A+ +
Sbjct: 6 ADFILERLREWGVRRVFGYPGDGINGLLGALGRADDKPEFVQARHEEMAAFMAVAHAKFT 65
Query: 150 GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSI 209
G+ G+C+ATSGPGA +L++GL DA LD VP+VAI GQ R +G QE + + + +
Sbjct: 66 GEVGVCLATSGPGAIHLLNGLYDAKLDHVPVVAIVGQQARAALGGHYQQEVDLQSLFKDV 125
Query: 210 TKHNYLVLDV--DDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKL--- 264
++ + + + +V A A + R + +P D+ Q+L
Sbjct: 126 A-GAFVQMVTVPEQLRHLVDRAVRTALAER-TVTAVILPNDV-QELEYEPPPHAHGTVHS 182
Query: 265 -PGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTL 323
GY +R P + L + +++ +K + VG G L +++E+ E G VA L
Sbjct: 183 GVGY-TRPRVVPYDEDLRRAAEVLNAGRKVAILVGAGALGATDEVIAVAERLGAGVAKAL 241
Query: 324 MGLGSFPGTDELSLQM--LGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAK 381
+G + P D+L +G+ GT + + + D LL G F + L +A+
Sbjct: 242 LGKAALP--DDLPWVTGSIGLLGTKPSYELMRECDTLLMVGSSFP--YSEFLPKEG-QAR 296
Query: 382 IVHIDIDSAEIGKNKQP-HVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKV 440
V IDID +G + P V++ D L+ + +L K +WRE + E+ V
Sbjct: 297 GVQIDIDGRMLG-LRYPMEVNLVGDAAETLRALLPLLERKKD------RSWRERI-EKWV 348
Query: 441 KYPLSFKTFEES-------IPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPR 493
++T E + PQ L AI++ G W A+ + RR
Sbjct: 349 AR--WWETLEARAMVPADPVNPQRVFWELSPRLPDNAILTADSGSCANWYARDLRMRRGM 406
Query: 494 QWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMN-VQELATIKV-----EKL 547
SG L MG +P AI A A+PD ++ + GDG+ MN + EL T+
Sbjct: 407 MASLSGTLATMGPAVPYAIAAKFAHPDRPVIALVGDGAMQMNGMAELITVAKYWRQWSDP 466
Query: 548 PIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRE-SEIFPNM--LKFAEACGIPGA 604
+ +L+LNN+ L V WE R GDP E S+ P++ +FAE G+ G
Sbjct: 467 RLIVLVLNNRDLNQV-TWEQR--------VMEGDPKFEASQDLPDVPYARFAELLGLKGI 517
Query: 605 QVTRKADLRAAIQTMLDTPGPYLLDVI 631
+V L AA L P +L+V
Sbjct: 518 RVDDPEQLGAAWDEALAADRPVVLEVK 544
>gnl|CDD|238318 cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) enzyme family,
TPP-binding module; found in many key metabolic enzymes
which use TPP (also known as thiamine diphosphate) as a
cofactor. These enzymes include, among others, the E1
components of the pyruvate, the acetoin and the branched
chain alpha-keto acid dehydrogenase complexes.
Length = 168
Score = 168 bits (429), Expect = 4e-49
Identities = 66/173 (38%), Positives = 90/173 (52%), Gaps = 8/173 (4%)
Query: 459 IQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVAN 518
+ L +AI+ G WA ++ RR R++LTS G GAMG+GLPAAIGAA+A
Sbjct: 3 LAALRAALPEDAIVVNDAGNSAYWAYRYLPLRRGRRFLTSTGFGAMGYGLPAAIGAALAA 62
Query: 519 PDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTY 578
PD +V I GDG F+M QELAT LP+ +++ NN G + ++ FY + T
Sbjct: 63 PDRPVVCIAGDGGFMMTGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTD 122
Query: 579 LGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVI 631
L P+ AEA G G +V DL AA+ L GP L++V
Sbjct: 123 LS--------NPDFAALAEAYGAKGVRVEDPEDLEAALAEALAAGGPALIEVK 167
>gnl|CDD|132922 cd07039, TPP_PYR_POX, Pyrimidine (PYR) binding domain of POX.
Thiamine pyrophosphate (TPP family), pyrimidine (PYR)
binding domain of pyruvate oxidase (POX) subfamily. The
PYR domain is found in many key metabolic enzymes which
use TPP (also known as thiamine diphosphate) as a
cofactor. TPP binds in the cleft formed by a PYR domain
and a PP domain. The PYR domain, binds the
aminopyrimidine ring of TPP, the PP domain binds the
diphosphate residue. The PYR and PP domains have a
common fold, but do not share strong sequence
conservation. The PP domain is not included in this
sub-family. Most TPP-dependent enzymes have the PYR and
PP domains on the same subunit although these domains
can be alternatively arranged in the primary structure.
TPP-dependent enzymes are multisubunit proteins, the
smallest catalytic unit being a dimer-of-active sites.
Lactobacillus plantarum POX is a homotetramer
(dimer-of-homodimers), having two active sites per
homodimer lying between PYR and PP domains of different
subunits. POX decarboxylates pyruvate, producing
hydrogen peroxide and the energy-storage metabolite
acetylphosphate.
Length = 164
Score = 158 bits (402), Expect = 2e-45
Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 1/164 (0%)
Query: 89 KGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARS 148
AD++VE LE GV V+ PG + + AL R I + RHE+ FAA A+
Sbjct: 1 TVADVIVETLENWGVKRVYGIPGDSINGLMDALRREGKIEFIQVRHEEAAAFAASAEAKL 60
Query: 149 SGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRS 208
+GK G+C+ +SGPGA +L++GL DA D P++AI GQVP +GTD FQE ++ + +
Sbjct: 61 TGKLGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAGQVPTDELGTDYFQEVDLLALFKD 120
Query: 209 ITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQ 252
+ +N V + +P ++ A A + R G ++ +P D+Q
Sbjct: 121 VAVYNETVTSPEQLPELLDRAIRTAIAKR-GVAVLILPGDVQDA 163
>gnl|CDD|226471 COG3962, COG3962, Acetolactate synthase [Amino acid transport and
metabolism].
Length = 617
Score = 166 bits (422), Expect = 6e-44
Identities = 161/620 (25%), Positives = 260/620 (41%), Gaps = 99/620 (15%)
Query: 91 ADILVEALERQGVTD---------VFAYPG-GASMEIHQALTRSNNIRNVLP----RHEQ 136
A LV L +Q VFA G G I +AL + +R+ LP +EQ
Sbjct: 10 AQALVRFLAQQMTEIGEIVPFVGGVFAIFGHGNVAGIGEALYQ---VRDHLPTYQGHNEQ 66
Query: 137 GGIFAAEGYARSSGKPGICIATS--GPGATNLVSGLADALLDSVPLVAITGQV--PRR-- 190
G AA YA+ + I TS GPGA N+V+ A A ++ +P++ + G V R+
Sbjct: 67 GMAHAAIAYAKQHRRRRIYAVTSSIGPGAANMVTAAALAHVNRLPVLLLPGDVFATRQPD 126
Query: 191 -------------MIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGR 237
+ D F+ P+ IT+ L+ +PR +R ++
Sbjct: 127 PVLQQLEQFGDGTITTNDCFR--PVSRYFDRITRPEQLM---SALPRAMR---VMTDPAD 178
Query: 238 PGPVLIDVPKDIQQQLAVPNWNQPI----KLPGYMSRLPKEPSEVHLEQIVRLISESKKP 293
GPV + + +D+Q + ++ P K + R P E L LI +KKP
Sbjct: 179 CGPVTLALCQDVQAEA----YDYPESFFEKRVWRIRR--PPPDERELADAAALIKSAKKP 232
Query: 294 VLYVGGGCLNS--SEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYA 351
++ GGG L S E LR F E GIPV T G + L+L +G+ GT+ AN A
Sbjct: 233 LIVAGGGVLYSGAREALRAFAETHGIPVVETQAGKSALAWDHPLNLGGVGVTGTLAANRA 292
Query: 352 VDKSDLLLAFGVRFDDRVTGKLEAF-ASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLAL 410
+++DL++ G R D TG F K +++++ + K+ + + AD + L
Sbjct: 293 AEEADLVIGIGTRLQDFTTGSKALFKNPGVKFLNLNVQPFDAYKHDA--LPLVADARAGL 350
Query: 411 KGINRILGG-KDAEGRFD-----FSAWREELDEQKVKYPLSFKTFEESIPPQ-YAIQVLD 463
+ ++ LGG + A G D +AW E D P + F ++P Q I +
Sbjct: 351 EALSEALGGYRTAAGWTDERERLKAAWDAEADA-----PTAKNHFLNTLPTQTQVIGAVQ 405
Query: 464 ELTNGEAIISTGVGQ-----HQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVAN 518
+ ++++ G H++W A P + G MG+ + +GA A
Sbjct: 406 RTISDDSVVVCAAGSLPGDLHKLWRA-----GVPGTYHLEYGFSCMGYEIAGGLGAKAAE 460
Query: 519 PDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMV--MQWE---DRFYKAN 573
PD + + GDGS++M ELAT + I ++LL+N+ G + +Q F
Sbjct: 461 PDREVYVMVGDGSYMMLNSELATSVMLGKKIIVVLLDNRGYGCINRLQMATGGASFN--- 517
Query: 574 RAHTYLGDPSRESEIFP-NMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDV-I 631
L D E EI + AE+ G +V +L AA+ + ++ +
Sbjct: 518 ---NLLRDTDHEEEILQVDFAAHAESYGAKAYKVGTIEELEAALADAKASDRTTVIVIDT 574
Query: 632 FPHQEHVLPMIPSGGAFKDV 651
P GG++ DV
Sbjct: 575 DPK-----TTTDDGGSWWDV 589
>gnl|CDD|132298 TIGR03254, oxalate_oxc, oxalyl-CoA decarboxylase. In a number of
bacteria, including Oxalobacter formigenes from the
human gut, a two-gene operon of oxc (oxalyl-CoA
decarboxylase) and frc (formyl-CoA transferase) encodes
a system for degrading and therefore detoxifying
oxalate. Members of this family are the thiamine
pyrophosphate (TPP)-containing enzyme oxalyl-CoA
decarboxylase [Cellular processes, Detoxification].
Length = 554
Score = 162 bits (411), Expect = 7e-43
Identities = 138/563 (24%), Positives = 251/563 (44%), Gaps = 48/563 (8%)
Query: 90 GADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS 149
G ++++AL+ G+ ++ G ++ + L ++ +R + RHEQ +AA +
Sbjct: 5 GFHLVIDALKLNGINTIYGVVGIPVTDLAR-LAQAKGMRYIGFRHEQSAGYAAAAAGFLT 63
Query: 150 GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDA--FQETPIVEVTR 207
KPG+C+ S PG N ++ LA+A + P++ I+G R ++ ++E + +
Sbjct: 64 QKPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAK 123
Query: 208 SITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGY 267
K Y VL +DI + A A SGRPG V +D+P + Q + L
Sbjct: 124 PFAKAAYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAAVLGQTMEAEKAKK-TLVKV 182
Query: 268 MSRLPKE-PSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTLM 324
+ PK+ PS +++ V L+ ++K+P++ +G G + EE+R+FVE TGIP M
Sbjct: 183 VDPAPKQLPSPDSVDRAVELLKDAKRPLILLGKGAAYAQADEEIREFVEKTGIPFLPMSM 242
Query: 325 GLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVT-GKLEAFASRAKIV 383
G P T S ++A+ ++D+++ G R + ++ GK + + AK +
Sbjct: 243 AKGLLPDTHPQS-------AAAARSFALAEADVVMLVGARLNWLLSHGKGKLWGEDAKFI 295
Query: 384 HIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVK-- 441
+DI+ E+ N+ V D+ ++ + + D WR + + K
Sbjct: 296 QVDIEPTEMDSNRPIAAPVVGDIGSVVQALLSAAKNGGVKPPAD---WRNAIKTKSEKNV 352
Query: 442 YPLSFKTFEESIPPQY--AIQVL-DELTNGEAIISTGVGQHQM-WAAQFYKYRRPRQWLT 497
++ + P Y A++ + D L + I G + + A +PR L
Sbjct: 353 AKMAERLSASESPMNYHGALEAIRDVLKDNPDIYLVNEGANTLDLARNVIDMYKPRHRLD 412
Query: 498 SGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQ 557
G G MG G+ AI AAV ++ ++GD +F + E+ TI LP+ +++ NN
Sbjct: 413 VGTWGVMGIGMGYAIAAAVETGKPVVA-LEGDSAFGFSGMEVETICRYNLPVCVVIFNN- 470
Query: 558 HLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNML-------KFAEACGIPGAQVTRKA 610
Y+ + + DP+ P +L K +A G G VT
Sbjct: 471 ---------GGIYRGDDVNVVGADPA------PTVLVHGARYDKMMKAFGGVGYNVTTPD 515
Query: 611 DLRAAIQTMLDTPGPYLLDVIFP 633
+L+AA+ L + P L++ +
Sbjct: 516 ELKAALNEALASGKPTLINAVID 538
>gnl|CDD|238972 cd02014, TPP_POX, Thiamine pyrophosphate (TPP) family, Pyruvate
oxidase (POX) subfamily, TPP-binding module; composed of
proteins similar to Lactobacillus plantarum POX, which
plays a key role in controlling acetate production under
aerobic conditions. POX decarboxylates pyruvate,
producing hydrogen peroxide and the energy-storage
metabolite acetylphosphate. It requires FAD in addition
to TPP and a divalent cation as cofactors.
Length = 178
Score = 145 bits (369), Expect = 1e-40
Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 9/179 (5%)
Query: 453 IPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAI 512
I P+ L++ +AI + VG +WAA+ + ++++ SG L MG GLP AI
Sbjct: 2 IHPERVAAELNKRAPDDAIFTIDVGNVTVWAARHLRMNGKQRFILSGLLATMGNGLPGAI 61
Query: 513 GAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKA 572
A +A PD ++ + GDG F M + +L T LP+ +++ NN LG + +WE
Sbjct: 62 AAKLAYPDRQVIALSGDGGFAMLMGDLITAVKYNLPVIVVVFNNSDLGFI-KWEQEVMGQ 120
Query: 573 NRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVI 631
L + P+ K AEA GI G +V +L AA+ L GP ++DV+
Sbjct: 121 PEFGVDLPN--------PDFAKIAEAMGIKGIRVEDPDELEAALDEALAADGPVVIDVV 171
>gnl|CDD|226470 COG3961, COG3961, Pyruvate decarboxylase and related thiamine
pyrophosphate-requiring enzymes [Carbohydrate transport
and metabolism / Coenzyme metabolism / General function
prediction only].
Length = 557
Score = 154 bits (390), Expect = 5e-40
Identities = 125/499 (25%), Positives = 206/499 (41%), Gaps = 71/499 (14%)
Query: 91 ADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSG 150
D L + L + G+ +F PG ++ + + +R V +E +AA+GYAR +G
Sbjct: 7 GDYLFDRLAQLGIKSIFGVPGDYNLSLLDKIYSVPGLRWVGNANELNAAYAADGYARLNG 66
Query: 151 KPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDA-------------F 197
+ T G G + ++G+A + + VP+V I G + F
Sbjct: 67 I-SALVTTFGVGELSALNGIAGSYAEHVPVVHIVGVPTTSAQASGLLLHHTLGDGDFKVF 125
Query: 198 QE--TPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAV 255
I +T N +I R++R A L PV I +P D+
Sbjct: 126 HRMSKEITCAQAMLTDIN---TAPREIDRVIRTA--LKQRR---PVYIGLPADVA----- 172
Query: 256 PNWNQPIKLP-GYMSRLPKEPSEVHLEQIVR----LISESKKPVLYVGGGCLNS---SEE 307
+ PI+ P + K L +++ LI+++KKPV+ + ++ +E
Sbjct: 173 ---DLPIEAPLTPLDLQLKTSDPEALSEVIDTIAELINKAKKPVI-LADALVSRFGLEKE 228
Query: 308 LRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMH-GTVYANY---AVDKSDLLLAFGV 363
L+K + TG PVA+ MG G DE LG++ G + AV+ +DL+L GV
Sbjct: 229 LKKLINATGFPVATLPMGKGVI---DESHPNYLGVYNGKLSEPEVREAVESADLILTIGV 285
Query: 364 RFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGI-NRILGGKDA 422
D TG A I+ I DS +I ++S +K AL+ + +I +
Sbjct: 286 LLTDFNTGGFTYQYKPANIIEIHPDSVKIKDAVFTNLS----MKDALQELAKKIDKRNLS 341
Query: 423 EGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIIS-TGVGQHQM 481
+ A PL+ + ++ L G+ II+ TG
Sbjct: 342 APPVAYPARTPPTPYPPANEPLTQEWLWNTVQ-----NFLKP---GDVIIAETGTSFFGA 393
Query: 482 WAAQFYK---YRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQE 538
+ K + W G++G+ LPAA+GAA+A PD ++ GDGS + VQE
Sbjct: 394 LDIRLPKGATFISQPLW------GSIGYTLPAALGAALAAPDRRVILFIGDGSLQLTVQE 447
Query: 539 LATIKVEKLPIKILLLNNQ 557
++T+ L I +LNN
Sbjct: 448 ISTMIRWGLKPIIFVLNND 466
>gnl|CDD|236243 PRK08327, PRK08327, acetolactate synthase catalytic subunit;
Validated.
Length = 569
Score = 153 bits (389), Expect = 9e-40
Identities = 132/569 (23%), Positives = 214/569 (37%), Gaps = 69/569 (12%)
Query: 88 RKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPR-----HEQGGIFAA 142
A++ +E L+ GV +F G I +A R+ LP HE I A
Sbjct: 7 YTAAELFLELLKELGVDYIFINSGTDYPPIIEAKARARAAGRPLPEFVICPHEIVAISMA 66
Query: 143 EGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPI 202
GYA +GKP + G N + G+ +A +P++ G+ P G + T I
Sbjct: 67 HGYALVTGKPQAVMVHVDVGTANALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRI 126
Query: 203 ---------VEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQL 253
+ R K +Y + D I +V A +A S GPV + +P+++ L
Sbjct: 127 HWTQEMRDQGGLVREYVKWDYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPREV---L 183
Query: 254 AVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYV--GGGCLNSSEELRKF 311
A M+ P P + + +++ +++PV+ G LR+
Sbjct: 184 AEEVPEVKADAGRQMAPAPPAPDPEDIARAAEMLAAAERPVIITWRAGRTAEGFASLRRL 243
Query: 312 VELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRV-- 369
E IPV + +H + ++DL+L D V
Sbjct: 244 AEELAIPV------VEYAGEVVNYPSDH-PLHLGPDPRADLAEADLVLVV----DSDVPW 292
Query: 370 TGKLEAFASRAKIVHIDIDSAEIGKNKQP------HVSVCADLKLALKGINRIL----GG 419
K + A+++ ID+D K++ P + + AD AL + L
Sbjct: 293 IPKKIRPDADARVIQIDVDPL---KSRIPLWGFPCDLCIQADTSTALDQLEERLKSLASA 349
Query: 420 KDAEGRFDFSAWRE--ELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIIST--G 475
+ R +A RE E + + I P Y L E+ + I T
Sbjct: 350 ERRRARRRRAAVRELRIRQEAAKRAEIERLKDRGPITPAYLSYCLGEVADEYDAIVTEYP 409
Query: 476 VGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMN 535
Q + +P + G G +G+ L AA+GA +A PD +++ GDGSFI
Sbjct: 410 FVPRQA------RLNKPGSYFGDGSAGGLGWALGAALGAKLATPDRLVIATVGDGSFIFG 463
Query: 536 VQE--LATIKVEKLPIKILLLNNQHLGMVMQWEDRFYK---ANRAHTYLG---DPSRESE 587
V E + LP+ +++ NN V + Y A R T+ G DP
Sbjct: 464 VPEAAHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVYPEGYAARKGTFPGTDFDPR---- 519
Query: 588 IFPNMLKFAEACGIPGAQVTRKADLRAAI 616
P+ K AEA G G +V +L+ A+
Sbjct: 520 --PDFAKIAEAFGGYGERVEDPEELKGAL 546
>gnl|CDD|236433 PRK09259, PRK09259, putative oxalyl-CoA decarboxylase; Validated.
Length = 569
Score = 148 bits (376), Expect = 6e-38
Identities = 149/575 (25%), Positives = 250/575 (43%), Gaps = 75/575 (13%)
Query: 90 GADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQ--GGIFAAEGYAR 147
G ++++AL+ G+ ++ G ++ + L ++ IR + RHEQ G AA G+
Sbjct: 12 GFHLVIDALKLNGIDTIYGVVGIPITDLAR-LAQAEGIRYIGFRHEQSAGNAAAAAGFL- 69
Query: 148 SSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDA--FQETPIVEV 205
+ KPG+C+ S PG N ++ LA+A + P++ I+G R ++ ++E +
Sbjct: 70 -TQKPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSEREIVDLQQGDYEELDQLNA 128
Query: 206 TRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDI----------QQQLAV 255
+ K + V +DI V A A SGRPG V +D+P + L
Sbjct: 129 AKPFCKAAFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAKVLAQTMDADEALTSLVK 188
Query: 256 PNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVE 313
P +LP P V ++ + L+ ++K+P++ +G G + E++R+FVE
Sbjct: 189 VVDPAPAQLPA--------PEAV--DRALDLLKKAKRPLIILGKGAAYAQADEQIREFVE 238
Query: 314 LTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVT-GK 372
TGIP M G P T S + A+ +D++L G R + ++ GK
Sbjct: 239 KTGIPFLPMSMAKGLLPDTHPQS-------AAAARSLALANADVVLLVGARLNWLLSHGK 291
Query: 373 LEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWR 432
+ + + K + IDI+ EI N+ V D+ ++ + L + + W
Sbjct: 292 GKTWGADKKFIQIDIEPQEIDSNRPIAAPVVGDIGSVMQALLAGLKQNTFKAP---AEWL 348
Query: 433 EELDEQKVKYPLSFKTFEESIPPQY----AIQVL-DELTNGEAIISTGVGQHQMWAAQ-- 485
+ L E+K K + A+ + D L I G + + A+
Sbjct: 349 DALAERKEKNAAKMAEKLSTDTQPMNFYNALGAIRDVLKENPDIYLVNEGANTLDLARNI 408
Query: 486 --FYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIK 543
YK PR L G G MG G+ AI AAV +V I+GD +F + E+ TI
Sbjct: 409 IDMYK---PRHRLDCGTWGVMGIGMGYAIAAAVETGKP-VVAIEGDSAFGFSGMEVETIC 464
Query: 544 VEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNML-------KFA 596
LP+ +++ NN G + + +D N + GDPS P +L K
Sbjct: 465 RYNLPVTVVIFNN---GGIYRGDD----VNLSGA--GDPS------PTVLVHHARYDKMM 509
Query: 597 EACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVI 631
EA G G VT +LR A+ + + P L++V+
Sbjct: 510 EAFGGVGYNVTTPDELRHALTEAIASGKPTLINVV 544
>gnl|CDD|238968 cd02010, TPP_ALS, Thiamine pyrophosphate (TPP) family, Acetolactate
synthase (ALS) subfamily, TPP-binding module; composed
of proteins similar to Klebsiella pneumoniae ALS, a
catabolic enzyme required for butanediol fermentation.
ALS catalyzes the conversion of 2 molecules of pyruvate
to acetolactate and carbon dioxide. ALS does not contain
FAD, and requires TPP and a divalent metal cation for
activity.
Length = 177
Score = 125 bits (316), Expect = 3e-33
Identities = 54/176 (30%), Positives = 91/176 (51%), Gaps = 9/176 (5%)
Query: 455 PQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGA 514
PQ + L + + I+ VG H++W A++Y+ P L S GL MG LP AIGA
Sbjct: 1 PQRIVHDLRAVMGDDDIVLLDVGAHKIWMARYYRTYAPNTCLISNGLATMGVALPGAIGA 60
Query: 515 AVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANR 574
+ PD +V + GDG F+MN QEL T K+P+ +L+ N+ G++ +++ Y +
Sbjct: 61 KLVYPDRKVVAVSGDGGFMMNSQELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGRDS 120
Query: 575 AHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDV 630
+ G+ P+ +K+AE+ G G ++ DL ++ L G +++D
Sbjct: 121 GVDF-GN--------PDFVKYAESFGAKGYRIESADDLLPVLERALAADGVHVIDC 167
>gnl|CDD|132915 cd06586, TPP_enzyme_PYR, Pyrimidine (PYR) binding domain of
thiamine pyrophosphate (TPP)-dependent enzymes.
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR)
binding domain; found in many key metabolic enzymes
which use TPP (also known as thiamine diphosphate) as a
cofactor. TPP binds in the cleft formed by a PYR domain
and a PP domain. The PYR domain, binds the
aminopyrimidine ring of TPP, the PP domain binds the
diphosphate residue. A polar interaction between the
conserved glutamate of the PYR domain and the N1' of the
TPP aminopyrimidine ring is shared by most TPP-dependent
enzymes, and participates in the activation of TPP. The
PYR and PP domains have a common fold, but do not share
strong sequence conservation. The PP domain is not
included in this group. Most TPP-dependent enzymes have
the PYR and PP domains on the same subunit although
these domains can be alternatively arranged in the
primary structure. In the case of 2-oxoisovalerate
dehydrogenase (2OXO), sulfopyruvate decarboxylase
(ComDE), and the E1 component of human pyruvate
dehydrogenase complex (E1- PDHc) the PYR and PP domains
appear on different subunits. TPP-dependent enzymes are
multisubunit proteins, the smallest catalytic unit being
a dimer-of-active sites. For many of these enzymes the
active sites lie between PP and PYR domains on different
subunits. However, for the homodimeric enzymes
1-deoxy-D-xylulose 5-phosphate synthase (DXS) and
Desulfovibrio africanus pyruvate:ferredoxin
oxidoreductase (PFOR), each active site lies at the
interface of the PYR and PP domains from the same
subunit.
Length = 154
Score = 117 bits (294), Expect = 1e-30
Identities = 49/156 (31%), Positives = 70/156 (44%), Gaps = 2/156 (1%)
Query: 92 DILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGK 151
E L GV VF YPG + AL + HE G AA GYAR+ G
Sbjct: 1 AAFAEVLTAWGVRHVFGYPGDEISSLLDALREGDKRIIDTVIHELGAAGAAAGYARAGG- 59
Query: 152 PGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITK 211
P + I TSG G N ++GLADA + +P+V + G FQ + + RSI +
Sbjct: 60 PPVVIVTSGTGLLNAINGLADAAAEHLPVVFLIGARGISAQAKQTFQSMFDLGMYRSIPE 119
Query: 212 HNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPK 247
N ++P + A A + GPV++ +P+
Sbjct: 120 ANISSPSPAELPAGIDHAIRTAYAS-QGPVVVRLPR 154
>gnl|CDD|238960 cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) family, BFDC
subfamily, TPP-binding module; composed of proteins
similar to Pseudomonas putida benzoylformate
decarboxylase (BFDC). P. putida BFDC plays a role in the
mandelate pathway, catalyzing the conversion of
benzoylformate to benzaldehyde and carbon dioxide. This
enzyme is dependent on TPP and a divalent metal cation
as cofactors.
Length = 178
Score = 113 bits (286), Expect = 4e-29
Identities = 60/190 (31%), Positives = 86/190 (45%), Gaps = 24/190 (12%)
Query: 453 IPPQYAIQVLDELTNGEAIIST-GVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAA 511
+ P+Y L +AII V Q RP + T G G +G+GLPAA
Sbjct: 1 LTPEYLAAALAAALPEDAIIVDEAVTNGLPLRDQL-PLTRPGSYFTLRG-GGLGWGLPAA 58
Query: 512 IGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYK 571
+GAA+ANPD +V I GDGSF+ +Q L T LP+ +++LNN R Y
Sbjct: 59 VGAALANPDRKVVAIIGDGSFMYTIQALWTAARYGLPVTVVILNN-----------RGYG 107
Query: 572 ANRAHTYLGDPSRESEIFPNMLKF----------AEACGIPGAQVTRKADLRAAIQTMLD 621
A R+ P E P+ L A+A G+ +V +L A++ L
Sbjct: 108 ALRSFLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERVETPEELDEALREALA 167
Query: 622 TPGPYLLDVI 631
GP L++V+
Sbjct: 168 EGGPALIEVV 177
>gnl|CDD|235931 PRK07092, PRK07092, benzoylformate decarboxylase; Reviewed.
Length = 530
Score = 117 bits (296), Expect = 7e-28
Identities = 130/560 (23%), Positives = 217/560 (38%), Gaps = 67/560 (11%)
Query: 92 DILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGK 151
D ++ L R G+T VF PG S E+ ++ R VL E + A+GYA+++G
Sbjct: 16 DATIDLLRRFGITTVFGNPG--STELPFLRDFPDDFRYVLGLQEAVVVGMADGYAQATGN 73
Query: 152 PGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAF-QETPIVEVTRSIT 210
S G N + L A + PLV GQ R ++ + F E+ +
Sbjct: 74 AAFVNLHSAAGVGNAMGNLFTAFKNHTPLVITAGQQARSILPFEPFLAAVQAAELPKPYV 133
Query: 211 KHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSR 270
K + +D+P + A+ +A GPV + +P D +W+QP + P
Sbjct: 134 KWSIEPARAEDVPAAIARAYHIAMQPPRGPVFVSIPYD--------DWDQPAE-PLPART 184
Query: 271 LPKE--PSEVHLEQIVRLISESKKPVLYVGGGC--LNSSEELRKFVELTGIPV-ASTLMG 325
+ P L ++ + +++P L VG + ++ + E PV + + G
Sbjct: 185 VSSAVRPDPAALARLGDALDAARRPALVVGPAVDRAGAWDDAVRLAERHRAPVWVAPMSG 244
Query: 326 LGSFPGTDELSLQML-GMHGTVYANYAVDKSDLLLAFGVR-FDDRVTGKLEAFASRAKIV 383
SFP L L + A +D DL+L G F V G A++V
Sbjct: 245 RCSFPEDHPLFAGFLPASREKISA--LLDGHDLVLVIGAPVFTYHVEGPGPHLPEGAELV 302
Query: 384 HIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKD---AEGRFDFSAWREELDEQKV 440
+ D ++ D++LAL+ + +L R
Sbjct: 303 QL-TDDPGEAAWAPMGDAIVGDIRLALRDLLALLPPSARPAPPARPMPPPAPAP------ 355
Query: 441 KYPLSFKTFEESIPPQYAIQVLDELTNGEAII------STGVGQHQMWAAQFYKYRRPRQ 494
E + + +Q L L +AI+ + M + RR
Sbjct: 356 ---------GEPLSVAFVLQTLAALRPADAIVVEEAPSTRPA----MQ--EHLPMRRQGS 400
Query: 495 WLT--SGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKIL 552
+ T SGGLG +GLPAA+G A+A P ++ + GDGS + ++Q L + KLP+ +
Sbjct: 401 FYTMASGGLG---YGLPAAVGVALAQPGRRVIGLIGDGSAMYSIQALWSAAQLKLPVTFV 457
Query: 553 LLNNQHLGMVMQWEDRFYKANRAH-TYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKAD 611
+LNN G ++W + L + + A G +V+ A+
Sbjct: 458 ILNNGRYG-ALRWFAPVFGVRDVPGLDLPG--------LDFVALARGYGCEAVRVSDAAE 508
Query: 612 LRAAIQTMLDTPGPYLLDVI 631
L A+ L GP L++V
Sbjct: 509 LADALARALAADGPVLVEVE 528
>gnl|CDD|238962 cd02004, TPP_BZL_OCoD_HPCL, Thiamine pyrophosphate (TPP) family,
BZL_OCoD_HPCL subfamily, TPP-binding module; composed of
proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA
decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase
(2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves
the acyloin linkage of benzoin producing 2 molecules of
benzaldehyde and enabling the Pseudomonas to grow on
benzoin as the sole carbon and energy source. OCoD has a
role in the detoxification of oxalate, catalyzing the
decarboxylation of oxalyl-CoA to formate. 2-HPCL is a
peroxisomal enzyme which plays a role in the
alpha-oxidation of 3-methyl-branched fatty acids,
catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA
into formyl-CoA and a 2-methyl-branched fatty aldehyde.
All these enzymes depend on Mg2+ and TPP for activity.
Length = 172
Score = 104 bits (263), Expect = 4e-26
Identities = 56/177 (31%), Positives = 82/177 (46%), Gaps = 7/177 (3%)
Query: 455 PQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGA 514
P + L E +AII + G WA + R+PR L +G G +G GL AI A
Sbjct: 1 PYRVLHELQEALPDDAIIVSDGGNTMDWARYILRPRKPRHRLDAGTFGTLGVGLGYAIAA 60
Query: 515 AVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANR 574
A+A PD +V ++GDG+F + EL T LPI +++ NN + + Y
Sbjct: 61 ALARPDKRVVLVEGDGAFGFSGMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLGL 120
Query: 575 AHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVI 631
T L +R AEA G G VT +L+ A++ L + P L++VI
Sbjct: 121 PVTTLLPDTRYD-------LVAEAFGGKGELVTTPEELKPALKRALASGKPALINVI 170
>gnl|CDD|132435 TIGR03394, indol_phenyl_DC, indolepyruvate/phenylpyruvate
decarboxylase, Azospirillum family. A family of closely
related, thiamine pyrophosphate-dependent enzymes
includes indolepyruvate decarboxylase (EC 4.1.1.74),
phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate
decarboxylase (EC 4.1.1.1), branched-chain
alpha-ketoacid decarboxylase, etc.. Members of this
group of homologs may overlap in specificity. This model
represents a clade that includes a Azospirillum
brasilense member active as both phenylpyruvate
decarboxylase and indolepyruvate decarboxylase.
Length = 535
Score = 96.1 bits (239), Expect = 9e-21
Identities = 127/572 (22%), Positives = 219/572 (38%), Gaps = 82/572 (14%)
Query: 91 ADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSG 150
A+ L+ AL+ +G ++F PG ++ + + + + HE FAA+ AR G
Sbjct: 3 AEALLRALKDRGAQEMFGIPGDFALPFFKVIEETGILPLHTLSHEPAVGFAADAAARYRG 62
Query: 151 KPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAF-----------QE 199
G+ T G GA N+V+ +A A + P+V I+G P G Q
Sbjct: 63 TLGVAAVTYGAGAFNMVNAIAGAYAEKSPVVVISG-APGTTEGNAGLLLHHQGRTLDSQF 121
Query: 200 TPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWN 259
EVT + +I R++ A L+ PV +++P+D+ P
Sbjct: 122 QVFKEVTCDQAVLDDPATAPAEIARVLGSARELSR-----PVYLEIPRDMVNAEVEP--- 173
Query: 260 QPIKLPGYMSRLPKEPSEVH-----LEQIVRLISESKKPVLYVGGGCLNSSEELRKF--- 311
+ P P + ++++ + + PV+ V E+R++
Sbjct: 174 --------VPDDPAWPVDRDALDACADEVLARMRSATSPVMMVC-------VEVRRYGLE 218
Query: 312 ------VELTGIPVASTLMGLGSFPGTDELSL-QMLGMHGTVYANYAVDKSDLLLAFGVR 364
+ G+PV +T MG G L LG+ G + V++SD LL GV
Sbjct: 219 AKVAELAQRLGVPVVTTFMGRGLLADAPTPPLGTYLGVAGDAELSRLVEESDGLLLLGVI 278
Query: 365 FDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEG 424
D + + +H + +G + V AD+ LA ++ A
Sbjct: 279 LSDTNFAVSQRKIDLRRTIHAFDRAVTLGYH------VYADIPLA-----GLVDALLALL 327
Query: 425 RFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDEL--TNGEAIISTGVGQHQMW 482
+ R + YP + E I P + +++ +G+ ++ +G
Sbjct: 328 CGLPPSDRTTRGKGPHAYPRGLQADAEPIAPMDIARAVNDRFARHGQMPLAADIGDCLFT 387
Query: 483 AAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATI 542
A + G MGFG+PA IGA + I+ + GDG+F M EL
Sbjct: 388 AMDMDDA----GLMAPGYYAGMGFGVPAGIGAQCTSGKRILTLV-GDGAFQMTGWELGNC 442
Query: 543 KVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIP 602
+ + ++L NN M+ R ++ A L D F +M A G
Sbjct: 443 RRLGIDPIVILFNNASWEML-----RVFQPESAFNDLDDWR-----FADM---AAGMGGD 489
Query: 603 GAQVTRKADLRAAIQTMLDTPGPY-LLDVIFP 633
G +V +A+L AA+ T G + L++ + P
Sbjct: 490 GVRVRTRAELAAALDKAFATRGRFQLIEAMLP 521
>gnl|CDD|238971 cd02013, TPP_Xsc_like, Thiamine pyrophosphate (TPP) family,
Xsc-like subfamily, TPP-binding module; composed of
proteins similar to Alcaligenes defragrans
sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a
key role in the degradation of taurine, catalyzing the
desulfonation of 2-sulfoacetaldehyde into sulfite and
acetyl phosphate. This enzyme requires TPP and divalent
metal ions for activity.
Length = 196
Score = 88.7 bits (220), Expect = 3e-20
Identities = 53/165 (32%), Positives = 79/165 (47%), Gaps = 11/165 (6%)
Query: 460 QVLDELTNG---EAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAV 516
QVL EL +AI+ST +G A + ++ +PR ++ G G+ LPA IGA
Sbjct: 8 QVLRELEKAMPEDAIVSTDIGNICSVANSYLRFEKPRSFIAPLSFGNCGYALPAIIGAKA 67
Query: 517 ANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAH 576
A PD +V I GDG++ M++ E+ T KLP+ ++ N+ G + + FY
Sbjct: 68 AAPDRPVVAIAGDGAWGMSMMEIMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNRFVG 127
Query: 577 TYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD 621
T L S K AEACG G V + D+ A+Q +
Sbjct: 128 TELESES--------FAKIAEACGAKGITVDKPEDVGPALQKAIA 164
>gnl|CDD|132920 cd07037, TPP_PYR_MenD, Pyrimidine (PYR) binding domain of
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-
carboxylate synthase (MenD) and related proteins.
Thiamine pyrophosphate (TPP family), pyrimidine (PYR)
binding domain of
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-
carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR
domain is found in many key metabolic enzymes which use
TPP (also known as thiamine diphosphate) as a cofactor.
TPP binds in the cleft formed by a PYR domain and a PP
domain. The PYR domain, binds the aminopyrimidine ring
of TPP, the PP domain binds the diphosphate residue. The
PYR and PP domains have a common fold, but do not share
strong sequence conservation. The PP domain is not
included in this sub-family. Most TPP-dependent enzymes
have the PYR and PP domains on the same subunit although
these domains can be alternatively arranged in the
primary structure. TPP-dependent enzymes are
multisubunit proteins, the smallest catalytic unit being
a dimer-of-active sites. Escherichia coli MenD (EcMenD)
is a homotetramer (dimer-of-homodimers), having two
active sites per homodimer lying between PYR and PP
domains of different subunits. EcMenD catalyzes a
Stetter-like conjugate addition of alpha-ketoglutarate
to isochorismate, leading to the formation of SEPHCHC
and carbon dioxide, this addition is the first committed
step in the biosynthesis of vitamin K2 (menaquinone).
Length = 162
Score = 85.2 bits (212), Expect = 2e-19
Identities = 50/164 (30%), Positives = 73/164 (44%), Gaps = 14/164 (8%)
Query: 93 ILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRH----EQGGIFAAEGYARS 148
LVE L+R GV DV PG S + A R H E+ F A G A++
Sbjct: 2 ALVEELKRLGVRDVVISPGSRSAPLALAAAEHPEFR----LHVRVDERSAAFFALGLAKA 57
Query: 149 SGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRS 208
SG+P + TSG NL+ + +A VPL+ +T P + GT A Q V +
Sbjct: 58 SGRPVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLTADRPPELRGTGANQTIDQVGLFGD 117
Query: 209 ITKHNYLV------LDVDDIPRIVREAFLLATSGRPGPVLIDVP 246
+ + + D+ + R+ A L A S PGPV +++P
Sbjct: 118 YVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161
>gnl|CDD|238964 cd02006, TPP_Gcl, Thiamine pyrophosphate (TPP) family, Gcl
subfamily, TPP-binding module; composed of proteins
similar to Escherichia coli glyoxylate carboligase
(Gcl). E. coli glyoxylate carboligase, plays a key role
in glyoxylate metabolism where it catalyzes the
condensation of two molecules of glyoxylate to give
tartronic semialdehyde and carbon dioxide. This enzyme
requires TPP, magnesium ion and FAD as cofactors.
Length = 202
Score = 81.9 bits (202), Expect = 8e-18
Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 4/168 (2%)
Query: 453 IPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAI 512
I PQ + +++ + T +G Q+ AQ +PR W+ G G +G+ +PAA+
Sbjct: 8 IKPQRVYEEMNKAFGRDVRYVTTIGLSQIAGAQMLHVYKPRHWINCGQAGPLGWTVPAAL 67
Query: 513 GAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRF--- 569
G A A+PD +V + GD F ++ELA ++P +L+NN +LG++ Q + F
Sbjct: 68 GVAAADPDRQVVALSGDYDFQFMIEELAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMD 127
Query: 570 YKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQ 617
Y+ N A + + +K AE G +VT+ +L AA +
Sbjct: 128 YQVNLAFENINSSE-LGGYGVDHVKVAEGLGCKAIRVTKPEELAAAFE 174
>gnl|CDD|132434 TIGR03393, indolpyr_decarb, indolepyruvate decarboxylase, Erwinia
family. A family of closely related, thiamine
pyrophosphate-dependent enzymes includes indolepyruvate
decarboxylase (EC 4.1.1.74), phenylpyruvate
decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC
4.1.1.1), branched-chain alpha-ketoacid decarboxylase,
etc.. Members of this group of homologs may overlap in
specificity. Within the larger family, this model
represents a clade of bacterial indolepyruvate
decarboxylases, part of a pathway for biosynthesis of
the plant hormone indole-3-acetic acid. Typically, these
species interact with plants, as pathogens or as
beneficial, root-associated bacteria [Central
intermediary metabolism, Other].
Length = 539
Score = 83.4 bits (206), Expect = 9e-17
Identities = 107/493 (21%), Positives = 200/493 (40%), Gaps = 63/493 (12%)
Query: 91 ADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSG 150
D L++ L G+ +F PG +++ + S +I V +E +AA+GYAR G
Sbjct: 4 GDYLLDRLTDIGIDHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNAAYAADGYARCKG 63
Query: 151 KPGICIATSGPGATNLVSGLADALLDSVPLVAIT----------GQVPRRMIGTDAFQE- 199
+ T G G + ++G+A + + +P++ I G++ +G F+
Sbjct: 64 A-AALLTTFGVGELSAINGIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHF 122
Query: 200 ----TPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAV 255
+ +T+ N +I R++ A RPG +++ P D+ +
Sbjct: 123 YRMAAEVTVAQAVLTEQNATA----EIDRVITTAL---RERRPGYLML--PVDVAAKAVT 173
Query: 256 PNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEE--LRKFVE 313
P P+ + ++ +K+ L L + L+K+V+
Sbjct: 174 PP-VNPLVTHKPAH--ADSALRAFRDAAENKLAMAKRVSLLADFLALRHGLKHALQKWVK 230
Query: 314 LTGIPVASTLMGLG-------SFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFD 366
+P A+ LMG G F GT S G V A++ +D ++ GVRF
Sbjct: 231 EVPMPHATLLMGKGILDEQQAGFYGTYSGS----ASTGAVKE--AIEGADAVICVGVRFT 284
Query: 367 DRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRF 426
D +T + + + + +A +G + + D A++ + + + A +
Sbjct: 285 DTITAGFTHQLTPEQTIDVQPHAARVGNVWFTGIPM-ND---AIETLVELC--EHAGLMW 338
Query: 427 DFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQF 486
S + + LS + F +++ Q ++ D II G AA
Sbjct: 339 SSSGAIPFPQPDESRSALSQENFWQTL--QTFLRPGD-------IILADQGTSAFGAADL 389
Query: 487 YKYRRPR--QWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKV 544
R P ++ G++G+ LPAA GA A P+ ++ + GDGS + +QEL ++
Sbjct: 390 ---RLPADVNFIVQPLWGSIGYTLPAAFGAQTACPNRRVILLIGDGSAQLTIQELGSMLR 446
Query: 545 EKLPIKILLLNNQ 557
+K IL+LNN+
Sbjct: 447 DKQHPIILVLNNE 459
>gnl|CDD|232855 TIGR00173, menD,
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
carboxylic-acid synthase. MenD was thought until
recently to act as SHCHC synthase, but has recently been
shown to act instead as SEPHCHC synthase. Conversion of
SEPHCHC into SHCHC and pyruvate may occur spontaneously
but is catalyzed efficiently, at least in some
organisms, by MenH (see TIGR03695). 2-oxoglutarate
decarboxylase/SHCHC synthase (menD) is a thiamine
pyrophosphate enzyme involved in menaquinone
biosynthesis [Biosynthesis of cofactors, prosthetic
groups, and carriers, Menaquinone and ubiquinone].
Length = 430
Score = 82.7 bits (205), Expect = 1e-16
Identities = 62/239 (25%), Positives = 93/239 (38%), Gaps = 14/239 (5%)
Query: 93 ILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKP 152
+LVE L R GV V PG S + AL +R + E+ F A G A++SG+P
Sbjct: 4 VLVEELVRLGVRHVVISPGSRSTPLALALAEHPRLRVHVHIDERSAGFFALGLAKASGRP 63
Query: 153 GICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKH 212
+ TSG NL+ + +A VPL+ +T P + G A Q + S +
Sbjct: 64 VAVVCTSGTAVANLLPAVIEAYYSGVPLIVLTADRPPELRGCGANQTIDQPGLFGSYVRW 123
Query: 213 NY-LVLDVDDIP-----RIVREAFLLATSGRPGPVLIDVP-----KDIQQQLAVPNWNQP 261
+ L L D P V A A PGPV I+VP + W
Sbjct: 124 SVDLPLPEADEPLRYLRSTVDRAVAQAQGAPPGPVHINVPFREPLYPDPLLQPLQPW--L 181
Query: 262 IKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNS-SEELRKFVELTGIPV 319
+S P L+ + + ++K+ ++ G +E L E G P+
Sbjct: 182 RSGVPTVSTGPPVLDPESLDDLWDRLRQAKRGLIIAGPLAGAEDAEALAALAEALGWPL 240
>gnl|CDD|238963 cd02005, TPP_PDC_IPDC, Thiamine pyrophosphate (TPP) family,
PDC_IPDC subfamily, TPP-binding module; composed of
proteins similar to pyruvate decarboxylase (PDC) and
indolepyruvate decarboxylase (IPDC). PDC, a key enzyme
in alcoholic fermentation, catalyzes the conversion of
pyruvate to acetaldehyde and CO2. It is able to utilize
other 2-oxo acids as substrates. In plants and various
plant-associated bacteria, IPDC plays a role in the
indole-3-pyruvic acid (IPA) pathway, a
tryptophan-dependent biosynthetic route to
indole-3-acetaldehyde (IAA). IPDC catalyzes the
decarboxylation of IPA to IAA. Both PDC and IPDC depend
on TPP and Mg2+ as cofactors.
Length = 183
Score = 76.4 bits (189), Expect = 5e-16
Identities = 46/139 (33%), Positives = 68/139 (48%), Gaps = 21/139 (15%)
Query: 502 GAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGM 561
G++G+ +PAA+GAA+A PD ++ + GDGSF M VQEL+T+ L I L+NN G
Sbjct: 50 GSIGYSVPAALGAALAAPDRRVILLVGDGSFQMTVQELSTMIRYGLNPIIFLINND--G- 106
Query: 562 VMQWEDRFYKANRA-HTYLGDPSRESEIFP-NMLKFAEACG----IPGAQVTRKADLRAA 615
Y RA H G + ++I N K E G +V + +L A
Sbjct: 107 --------YTIERAIH---GPEASYNDIANWNYTKLPEVFGGGGGGLSFRVKTEGELDEA 155
Query: 616 IQTMLDTP-GPYLLDVIFP 633
++ L L++VI P
Sbjct: 156 LKDALFNRDKLSLIEVILP 174
>gnl|CDD|236063 PRK07586, PRK07586, hypothetical protein; Validated.
Length = 514
Score = 79.1 bits (196), Expect = 2e-15
Identities = 47/148 (31%), Positives = 66/148 (44%), Gaps = 18/148 (12%)
Query: 491 RPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIK 550
P WLT G GA+G GLP A GAAVA PD ++ + GDGS + +Q L T E L +
Sbjct: 375 APHDWLTLTG-GAIGQGLPLATGAAVACPDRKVLALQGDGSAMYTIQALWTQARENLDVT 433
Query: 551 ILLLNN---QHLGMVMQWEDRFYKAN-----RAHTYLGDPSRESEIFPNMLKFAEACGIP 602
++ N L + R N L DP + + AE G+P
Sbjct: 434 TVIFANRAYAILRGELA---RVGAGNPGPRALDMLDLDDPD------LDWVALAEGMGVP 484
Query: 603 GAQVTRKADLRAAIQTMLDTPGPYLLDV 630
+VT + A+ L PGP+L++
Sbjct: 485 ARRVTTAEEFADALAAALAEPGPHLIEA 512
Score = 58.3 bits (142), Expect = 6e-09
Identities = 58/216 (26%), Positives = 83/216 (38%), Gaps = 12/216 (5%)
Query: 90 GADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS 149
GA+ LV L GV FA PG + M AL R +R VL E AA+GYAR +
Sbjct: 3 GAESLVRTLVDGGVDVCFANPGTSEMHFVAALDRVPGMRCVLGLFEGVATGAADGYARMA 62
Query: 150 GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSI 209
GKP + GPG N ++ L +A P+V I G DA + I + R +
Sbjct: 63 GKPAATLLHLGPGLANGLANLHNARRARTPIVNIVGDHATYHRKYDAPLTSDIEALARPV 122
Query: 210 TKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWN---QPIKLPG 266
+ D+ A A + +P D+ W+ P P
Sbjct: 123 SGWVRRSESAADVAADAAAAVAAARGAPGQVATLILPADVA-------WSEGGPPAPPPP 175
Query: 267 YMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL 302
+ +P+ V E + + VL +GG L
Sbjct: 176 APAPAAVDPAAV--EAAAAALRSGEPTVLLLGGRAL 209
>gnl|CDD|238961 cd02003, TPP_IolD, Thiamine pyrophosphate (TPP) family, IolD
subfamily, TPP-binding module; composed of proteins
similar to Rhizobium leguminosarum bv. viciae IolD. IolD
plays an important role in myo-inositol catabolism.
Length = 205
Score = 68.5 bits (168), Expect = 4e-13
Identities = 45/206 (21%), Positives = 80/206 (38%), Gaps = 23/206 (11%)
Query: 458 AIQVLDELTNGEAIISTGVGQ-----HQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAI 512
+ L+E + ++ G H++W A R P + G MG+ + A +
Sbjct: 4 VLGALNEAIGDDDVVINAAGSLPGDLHKLWRA-----RTPGGYHLEYGYSCMGYEIAAGL 58
Query: 513 GAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWE-----D 567
GA +A PD + + GDGS++M E+ T E L I I+L +N G + +
Sbjct: 59 GAKLAKPDREVYVLVGDGSYLMLHSEIVTAVQEGLKIIIVLFDNHGFGCINNLQESTGSG 118
Query: 568 RFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYL 627
F R + + + A + G +V +L+AA+ + +
Sbjct: 119 SFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVKTIEELKAALAKAKASDRTTV 178
Query: 628 LDVIFPHQEHVLP--MIPSGGAFKDV 651
+ + P M P G++ DV
Sbjct: 179 IVI------KTDPKSMTPGYGSWWDV 198
>gnl|CDD|132921 cd07038, TPP_PYR_PDC_IPDC_like, Pyrimidine (PYR) binding domain of
pyruvate decarboxylase (PDC), indolepyruvate
decarboxylase (IPDC) and related proteins. Thiamine
pyrophosphate (TPP family), pyrimidine (PYR) binding
domain of pyruvate decarboxylase (PDC) and
indolepyruvate decarboxylase (IPDC) subfamily. The PYR
domain is found in many key metabolic enzymes which use
TPP (also known as thiamine diphosphate) as a cofactor.
TPP binds in the cleft formed by a PYR domain and a PP
domain. The PYR domain, binds the aminopyrimidine ring
of TPP, the PP domain binds the diphosphate residue. The
PYR and PP domains have a common fold, but do not share
strong sequence conservation. The PP domain is not
included in this sub-family. Most TPP-dependent enzymes
have the PYR and PP domains on the same subunit although
these domains can be alternatively arranged in the
primary structure. TPP-dependent enzymes are
multisubunit proteins, the smallest catalytic unit being
a dimer-of-active sites, for many the active sites lie
between PP and PYR domains on different subunits. PDC
catalyzes the conversion of pyruvate to acetaldehyde and
CO2 in alcoholic fermentation. IPDC plays a role in the
indole-3-pyruvic acid (IPA) pathway in plants and
various plant-associated bacteria, it catalyzes the
decarboxylation of IPA to IAA. Also belonging to this
group is Mycobacterium tuberculosis alpha-keto acid
decarboxylase (MtKDC) which participates in amino acid
degradation via the Ehrlich pathway, and Lactococcus
lactis branched-chain keto acid decarboxylase (KdcA) an
enzyme identified as being involved in cheese ripening,
which exhibits a very broad substrate range in the
decarboxylation and carboligation reactions.
Length = 162
Score = 64.8 bits (159), Expect = 2e-12
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 94 LVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPG 153
L+E L++ GV VF PG ++ + A+ + +R V +E +AA+GYAR G G
Sbjct: 3 LLERLKQLGVKHVFGVPGDYNLPLLDAIEENPGLRWVGNCNELNAGYAADGYARVKG-LG 61
Query: 154 ICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDA 196
+ T G G + ++G+A A + VP+V I G + +
Sbjct: 62 ALVTTYGVGELSALNGIAGAYAEHVPVVHIVGAPSTKAQASGL 104
>gnl|CDD|139002 PRK12474, PRK12474, hypothetical protein; Provisional.
Length = 518
Score = 68.4 bits (167), Expect = 5e-12
Identities = 59/214 (27%), Positives = 89/214 (41%), Gaps = 8/214 (3%)
Query: 90 GADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS 149
GAD +V+ L GV FA PG + M AL R +R VL E AA+GY R +
Sbjct: 7 GADSVVDTLLNCGVEVCFANPGTSEMHFVAALDRVPRMRPVLCLFEGVVTGAADGYGRIA 66
Query: 150 GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSI 209
GKP + + GPG N ++ L +A + P+V I G + DA + I R +
Sbjct: 67 GKPAVTLLHLGPGLANGLANLHNARRAASPIVNIVGDHAVEHLQYDAPLTSDIDGFARPV 126
Query: 210 TKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMS 269
++ + + V A A S G + +P D+ WN+ +
Sbjct: 127 SRWVHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADVA-------WNEAAYAAQPLR 179
Query: 270 RLPKEPSEVH-LEQIVRLISESKKPVLYVGGGCL 302
+ P +E+I L+ KK L + G L
Sbjct: 180 GIGPAPVAAETVERIAALLRNGKKSALLLRGSAL 213
Score = 53.0 bits (127), Expect = 3e-07
Identities = 43/148 (29%), Positives = 65/148 (43%), Gaps = 8/148 (5%)
Query: 487 YKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEK 546
Y RP L G G++G GLP A GAAVA PD +V GDG +Q L T+ E
Sbjct: 375 YDRARPHTHLPLTG-GSIGQGLPLAAGAAVAAPDRKVVCPQGDGGAAYTMQALWTMAREN 433
Query: 547 LPIKILLLNNQH---LGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPG 603
L + +++ N+ L +Q A + L + E N +K AE G+
Sbjct: 434 LDVTVVIFANRSYAILNGELQRVGAQGAGRNALSMLDLHNPEL----NWMKIAEGLGVEA 489
Query: 604 AQVTRKADLRAAIQTMLDTPGPYLLDVI 631
++ T + A + GP L++ +
Sbjct: 490 SRATTAEEFSAQYAAAMAQRGPRLIEAM 517
>gnl|CDD|224087 COG1165, MenD,
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
synthase [Coenzyme metabolism].
Length = 566
Score = 59.3 bits (144), Expect = 4e-09
Identities = 72/310 (23%), Positives = 107/310 (34%), Gaps = 48/310 (15%)
Query: 88 RKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYAR 147
A + +E L R GV DV PG S + A + I + E+ F A G A+
Sbjct: 8 TLWARVFLEELARLGVRDVVICPGSRSTPLALAAAAHDAITVHVHIDERSAGFFALGLAK 67
Query: 148 SSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTR 207
+S +P I TSG NL + +A L VPL+ +T P + G A Q
Sbjct: 68 ASKRPVAVICTSGTAVANLYPAVIEANLSRVPLIVLTADRPPELRGCGANQ--------- 118
Query: 208 SITKHNY----------LVLDVDDIP------RIVREAFLLATSGRPGPVLIDVPKDIQQ 251
+I + L L DDI I A A + GPV I+VP
Sbjct: 119 AIDQTGLFGSYVRASIDLPLPEDDIEALWYLRTIASAAAQQARTPHAGPVHINVPFR--- 175
Query: 252 QLAVPNWNQPIKLPGYMSRLPKE---PSEVHLEQIVRLISE-----SKKPVLYVGGGCLN 303
+ VP+ + L ++Q L+SE K+ V+ G
Sbjct: 176 EPLVPDLEPEGAGTPWGRPLGHWWFYTGPWTVDQGPDLLSEWFFWRQKRGVIVAGRMSAQ 235
Query: 304 SSEELRKFVELTGIPV-ASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFG 362
+ + G P+ A L L ++ +L L + D
Sbjct: 236 EGKGILALANTLGWPILADPLSPLRNYIPCYDLWLA----NPKAAEKLRPD-------IV 284
Query: 363 VRFDDRVTGK 372
++F T K
Sbjct: 285 IQFGSPPTSK 294
>gnl|CDD|239468 cd03371, TPP_PpyrDC, Thiamine pyrophosphate (TPP) family, PpyrDC
subfamily, TPP-binding module; composed of proteins
similar to phosphonopyruvate decarboxylase (PpyrDC)
proteins. PpyrDC is a homotrimeric enzyme which
functions in the biosynthesis of C-P compounds such as
bialaphos tripeptide in Streptomyces hygroscopicus.
These proteins require TPP and divalent metal cation
cofactors.
Length = 188
Score = 56.2 bits (136), Expect = 5e-09
Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 30/180 (16%)
Query: 458 AIQ-VLDELTNGEAIIST-GVGQHQMWAAQ-FYKYRRPRQWLTSGGLGAMGFGLPAAIGA 514
AI+ VL A++ST G+ +++ + + +LT G MG A+G
Sbjct: 4 AIEIVLSRAPATAAVVSTTGMTSRELFELRDRPGGGHAQDFLTVGS---MGHASQIALGI 60
Query: 515 AVANPDAIIVDIDGDGSFIMNVQELATIKVEKLP-IKILLLNNQHLGMVMQWEDRFYKAN 573
A+A PD +V IDGDG+ +M++ LATI + ++LNN
Sbjct: 61 ALARPDRKVVCIDGDGAALMHMGGLATIGGLAPANLIHIVLNN----------------- 103
Query: 574 RAHTYLG-DPSRESEI-FPNMLKFAEACGIPGA-QVTRKADLRAAIQTMLDTPGPYLLDV 630
AH +G P+ ++ P + A+ACG +V +L AA+ L GP ++V
Sbjct: 104 GAHDSVGGQPTVSFDVSLPAI---AKACGYRAVYEVPSLEELVAALAKALAADGPAFIEV 160
>gnl|CDD|235721 PRK06163, PRK06163, hypothetical protein; Provisional.
Length = 202
Score = 55.6 bits (134), Expect = 9e-09
Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 27/169 (15%)
Query: 465 LTNGEAIISTGVG--QHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAI 522
L + EA+I G+G +WAA +RP+ + LG+MG P A+G A+A P
Sbjct: 26 LKDEEAVIG-GIGNTNFDLWAAG----QRPQNFYM---LGSMGLAFPIALGVALAQPKRR 77
Query: 523 IVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDP 582
++ ++GDGS +M + L TI L ++L +++ ++ Y+ G P
Sbjct: 78 VIALEGDGSLLMQLGALGTIAA---------LAPKNLTIIV-MDNGVYQITG-----GQP 122
Query: 583 SRESEIFPNMLKFAEACGIP-GAQVTRKADLRAAIQTMLDTPGPYLLDV 630
+ S+ +++ A G+ +A A + L PGP + V
Sbjct: 123 TLTSQTV-DVVAIARGAGLENSHWAADEAHFEALVDQALSGPGPSFIAV 170
>gnl|CDD|132340 TIGR03297, Ppyr-DeCO2ase, phosphonopyruvate decarboxylase. This
family consists of examples of phosphonopyruvate an
decarboxylase enzyme that produces phosphonoacetaldehyde
(Pald), the second step in the biosynthesis
phosphonate-containing compounds. Since the preceding
enzymate step, PEP phosphomutase (AepX, TIGR02320)
favors the substrate PEP energetically, the
decarboxylase is required to drive the reaction in the
direction of phosphonate production. Pald is a precursor
of natural products including antibiotics like bialaphos
and phosphonothricin in Streptomyces species,
phosphonate-modified molecules such as the
polysaccharide B of Bacteroides fragilis, the
phosphonolipids of Tetrahymena pyroformis, the
glycosylinositolphospholipids of Trypanosoma cruzi. This
gene generally occurs in prokaryotic organisms adjacent
to the gene for AepX. Most often an aminotansferase
(aepZ) is also present which leads to the production of
the most common phosphonate compound,
2-aminoethylphosphonate (AEP).
Length = 361
Score = 51.2 bits (123), Expect = 8e-07
Identities = 54/185 (29%), Positives = 79/185 (42%), Gaps = 40/185 (21%)
Query: 458 AIQ-VLDELTNGEAIISTGVGQHQMWAAQFYKYR------RPRQWLTSGGLGAMGFGLPA 510
AI +LD L + I+ST G + + Y+ R R +LT G MG
Sbjct: 177 AIAAILDHLPDNTVIVST-TG---KTSRELYELRDRIGQGHARDFLTVGS---MGHASQI 229
Query: 511 AIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKI-LLLNNQHLGMVMQWEDRF 569
A+G A+A PD +V +DGDG+ +M++ LATI + I +L NN
Sbjct: 230 ALGLALARPDQRVVCLDGDGAALMHMGGLATIGTQGPANLIHVLFNNG------------ 277
Query: 570 YKANRAHTYLGDPSRESEIFPNMLKFAE---ACGIPGA-QVTRKADLRAAIQTMLDTPGP 625
AH +G S L FA+ ACG +V+ +L A+ GP
Sbjct: 278 -----AHDSVGGQPTVS----QHLDFAQIAKACGYAKVYEVSTLEELETALTAASSANGP 328
Query: 626 YLLDV 630
L++V
Sbjct: 329 RLIEV 333
>gnl|CDD|239469 cd03372, TPP_ComE, Thiamine pyrophosphate (TPP) family, ComE
subfamily, TPP-binding module; composed of proteins
similar to Methanococcus jannaschii sulfopyruvate
decarboxylase beta subunit (ComE). M. jannaschii
sulfopyruvate decarboxylase (ComDE) is a dodecamer of
six alpha (D) subunits and six (E) beta subunits, which
catalyzes the decarboxylation of sulfopyruvic acid to
sulfoacetaldehyde in the coenzyme M pathway. ComDE
requires TPP and divalent metal cation cofactors.
Length = 179
Score = 49.2 bits (118), Expect = 8e-07
Identities = 43/150 (28%), Positives = 62/150 (41%), Gaps = 22/150 (14%)
Query: 501 LGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLP-IKILLLNNQHL 559
LG+MG +G A+A P +IV IDGDGS +MN+ LATI EK + I++L+N
Sbjct: 41 LGSMGLASSIGLGLALAQPRKVIV-IDGDGSLLMNLGALATIAAEKPKNLIIVVLDNGAY 99
Query: 560 GMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTM 619
G G+ + ++ A+ACG+ T ++
Sbjct: 100 GST-----------------GNQPTHAGKKTDLEAVAKACGLDNV-ATVASEEAFEKAVE 141
Query: 620 LDTPGPYLLDV-IFPHQEHVLPMIPSGGAF 648
GP + V I P V P IP
Sbjct: 142 QALDGPSFIHVKIKPGNTDV-PNIPRDPVE 170
>gnl|CDD|238959 cd02001, TPP_ComE_PpyrDC, Thiamine pyrophosphate (TPP) family, ComE
and PpyrDC subfamily, TPP-binding module; composed of
proteins similar to sulfopyruvate decarboxylase beta
subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr
decarboxylase). Methanococcus jannaschii sulfopyruvate
decarboxylase (ComDE) is a dodecamer of six alpha (D)
subunits and six (E) beta subunits which, catalyzes the
decarboxylation of sulfopyruvic acid to
sulfoacetaldehyde in the coenzyme M pathway. Ppyr
decarboxylase is a homotrimeric enzyme which functions
in the biosynthesis of C-P compounds such as bialaphos
tripeptide in Streptomyces hygroscopicus. Ppyr
decarboxylase and ComDE require TPP and divalent metal
cation cofactors.
Length = 157
Score = 48.3 bits (115), Expect = 1e-06
Identities = 42/173 (24%), Positives = 67/173 (38%), Gaps = 28/173 (16%)
Query: 458 AIQVLDELTNGEAIIST-GVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAV 516
AI + E + I+ST G +++ Q R + LG+MG +G A+
Sbjct: 4 AIAEIIEASGDTPIVSTTGYASRELYDVQ----DRDGHFYM---LGSMGLAGSIGLGLAL 56
Query: 517 ANPDAIIVDIDGDGSFIMNVQELATI-KVEKLPIKILLLNNQHLGMVMQWEDRFYKANRA 575
+IV +DGDGS +MN L T + L + +++L+N+ G
Sbjct: 57 GLSRKVIV-VDGDGSLLMNPGVLLTAGEFTPLNLILVVLDNRAYGST--------GGQPT 107
Query: 576 HTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLL 628
+ N+ +A ACG L + +L T GP LL
Sbjct: 108 PSSNV----------NLEAWAAACGYLVLSAPLLGGLGSEFAGLLATTGPTLL 150
>gnl|CDD|215311 PLN02573, PLN02573, pyruvate decarboxylase.
Length = 578
Score = 50.5 bits (121), Expect = 2e-06
Identities = 75/298 (25%), Positives = 135/298 (45%), Gaps = 43/298 (14%)
Query: 94 LVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPG 153
LVE GVTDVF+ PG ++ + L + + +E +AA+GYAR+ G G
Sbjct: 26 LVEI----GVTDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARARGV-G 80
Query: 154 ICIATSGPGATNLVSGLADALLDSVPLVAITG----------QVPRRMIGTDAF-QETPI 202
C+ T G ++++ +A A +++P++ I G ++ IG F QE
Sbjct: 81 ACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQE--- 137
Query: 203 VEVTRSITKHNYLVLDVDD----IPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNW 258
+ +++T + ++ +++D I + A PV I V ++ + P +
Sbjct: 138 LRCFQTVTCYQAVINNLEDAHELIDTAISTALK-----ESKPVYISVSCNL-AAIPHPTF 191
Query: 259 NQPIKLPGYMS-RLPKEPS-EVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVEL-- 314
++ +P +++ RL + S E +E ++++ KPVL VGG L ++ + FVEL
Sbjct: 192 SRE-PVPFFLTPRLSNKMSLEAAVEAAAEFLNKAVKPVL-VGGPKLRVAKACKAFVELAD 249
Query: 315 -TGIPVASTLMGLGSFPGTDELSLQMLGMH----GTVYANYAVDKSDLLLAFGVRFDD 367
+G PVA G P +G + T + V+ +D L G F+D
Sbjct: 250 ASGYPVAVMPSAKGLVPEHHP---HFIGTYWGAVSTPFCAEIVESADAYLFAGPIFND 304
Score = 38.5 bits (90), Expect = 0.012
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 502 GAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELAT-IKVEKLPIKILLLNN 556
G++G+ + A +G A A PD ++ GDGSF + Q+++T I+ + I I L+NN
Sbjct: 428 GSIGWSVGATLGYAQAAPDKRVIACIGDGSFQVTAQDVSTMIRCGQKSI-IFLINN 482
>gnl|CDD|215530 PLN02980, PLN02980, 2-oxoglutarate decarboxylase/ hydro-lyase/
magnesium ion binding / thiamin pyrophosphate binding.
Length = 1655
Score = 50.2 bits (120), Expect = 3e-06
Identities = 63/247 (25%), Positives = 101/247 (40%), Gaps = 25/247 (10%)
Query: 75 ETNFSSRFAPDQPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNN--IRNVLP 132
E + + + A +++E R G+T PG S A+ SN+ +
Sbjct: 288 EVSNFLKDYANINAVWASLIIEECTRLGLTYFCVAPGSRSS--PLAIAASNHPLTTCIAC 345
Query: 133 RHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMI 192
E+ F A GYAR S KP + I +SG +NL+ + +A D VPL+ +T P +
Sbjct: 346 FDERSLAFHALGYARGSLKPAVVITSSGTAVSNLLPAVVEASQDFVPLLLLTADRPPELQ 405
Query: 193 GTDAFQETPIVEVTRSITKHNY-LVLDVDDIP-RIV----REAFLLATSGRPGPVLIDVP 246
A Q V S + + L D IP R+V A ATS GPV I+ P
Sbjct: 406 DAGANQAINQVNHFGSFVRFFFNLPPPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCP 465
Query: 247 KDIQQQLAVPNWNQPI--KLPGYMS---------RLPKEPS----EVHLEQIVRLISESK 291
+ NW L +MS ++ + + +++ +I E+K
Sbjct: 466 FREPLDGSPTNWMSSCLKGLDMWMSNAEPFTKYIQMQSSKADGDTTGQITEVLEVIQEAK 525
Query: 292 KPVLYVG 298
+ +L +G
Sbjct: 526 RGLLLIG 532
>gnl|CDD|234373 TIGR03846, sulfopy_beta, sulfopyruvate decarboxylase, beta subunit.
Nearly every member of this protein family is the beta
subunit, or else the C-terminal region, of sulfopyruvate
decarboxylase, in an archaeal species capable of
coenzyme M biosynthesis. However, the enzyme also occurs
in Roseovarius nubinhibens ISM in a degradative pathway,
where the resulting sulfoacetaldehyde is desulfonated to
acetyl phosphate, then converted to acetyl-CoA (see
PMID:19581363).
Length = 181
Score = 46.1 bits (110), Expect = 1e-05
Identities = 51/189 (26%), Positives = 80/189 (42%), Gaps = 29/189 (15%)
Query: 458 AIQVLDELTNGEAIIST-GVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAV 516
AI+ + E ++S GV +++A + RP + LG+MG +G A+
Sbjct: 4 AIRAIASYLEDELVVSNIGVPSKELYAIR----DRPLNFYM---LGSMGLASSIGLGLAL 56
Query: 517 ANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAH 576
A +IV IDGDGS +MN+ L TI E IL++ + N A+
Sbjct: 57 ATDRTVIV-IDGDGSLLMNLGVLPTIAAESPKNLILVILD----------------NGAY 99
Query: 577 TYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKA-DLRAAIQTMLDTPGPYLLDVIF-PH 634
G+ + ++ A+A GI + +LR A++ L GP + V P
Sbjct: 100 GSTGNQPTPASRRTDLELVAKAAGIRNVEKVADEEELRDALKA-LAMKGPTFIHVKVKPG 158
Query: 635 QEHVLPMIP 643
V P IP
Sbjct: 159 NAKV-PNIP 166
>gnl|CDD|236020 PRK07449, PRK07449,
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
carboxylate synthase; Validated.
Length = 568
Score = 43.3 bits (103), Expect = 3e-04
Identities = 47/175 (26%), Positives = 67/175 (38%), Gaps = 33/175 (18%)
Query: 91 ADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRH----EQGGIFAAEGYA 146
A +++E L R GV V PG S + A +R H E+ F A G A
Sbjct: 12 AAVILEELTRLGVRHVVIAPGSRSTPLTLAAAEHPRLR----LHTHFDERSAGFLALGLA 67
Query: 147 RSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVT 206
++S +P I TSG NL + +A L VPL+ +T P + A Q
Sbjct: 68 KASKRPVAVIVTSGTAVANLYPAVIEAGLTGVPLIVLTADRPPELRDCGANQ-------- 119
Query: 207 RSITKHNY----------LVLDVDDIPR-----IVREAFLLATSGRPGPVLIDVP 246
+I + L DI + A L A + + GPV I+ P
Sbjct: 120 -AIDQLGLFGSYPFTSLALPEPTQDILAYWLVTTIDAA-LAAQTLQAGPVHINCP 172
>gnl|CDD|238966 cd02008, TPP_IOR_alpha, Thiamine pyrophosphate (TPP) family,
IOR-alpha subfamily, TPP-binding module; composed of
proteins similar to indolepyruvate ferredoxin
oxidoreductase (IOR) alpha subunit. IOR catalyzes the
oxidative decarboxylation of arylpyruvates, such as
indolepyruvate or phenylpyruvate, which are generated by
the transamination of aromatic amino acids, to the
corresponding aryl acetyl-CoA.
Length = 178
Score = 40.7 bits (96), Expect = 6e-04
Identities = 36/169 (21%), Positives = 61/169 (36%), Gaps = 21/169 (12%)
Query: 461 VLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPD 520
L + ++I+S +G + + A P MG + AIG A A+ D
Sbjct: 18 ALRKAFKKDSIVSGDIGCYTLGALP------PLN--AIDTCTCMGASIGVAIGMAKASED 69
Query: 521 AIIVDIDGDGSFIMN-VQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYL 579
+V + GD +F + + L K I +++L+N+ M + H
Sbjct: 70 KKVVAVIGDSTFFHSGILGLINAVYNKANITVVILDNRTTAMTGG---------QPHPGT 120
Query: 580 GDPSRESEIFPNMLKFAEACGIPGAQVTRKADL---RAAIQTMLDTPGP 625
G E ++ A G+ V DL R ++ L PG
Sbjct: 121 GKTLTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALAVPGV 169
>gnl|CDD|238967 cd02009, TPP_SHCHC_synthase, Thiamine pyrophosphate (TPP) family,
SHCHC synthase subfamily, TPP-binding module; composed
of proteins similar to Escherichia coli
2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic
acid (SHCHC) synthase (also called MenD). SHCHC synthase
plays a key role in the menaquinone biosynthetic
pathway, converting isochorismate and 2-oxoglutarate to
SHCHC, pyruvate and carbon dioxide. The enzyme requires
TPP and a divalent metal cation for activity.
Length = 175
Score = 39.1 bits (92), Expect = 0.002
Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 27/130 (20%)
Query: 511 AIGAAVANPDAIIVDIDGDGSFI--MNVQELATIKVEKLPIKILLLNNQ-----HLGMVM 563
A+G A+A ++ + GD SF+ +N L K E L + I+++NN L
Sbjct: 60 ALGIALATDKPTVL-LTGDLSFLHDLNG--LLLGKQEPLNLTIVVINNNGGGIFSLLPQA 116
Query: 564 QWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEAC---GIPGAQVTRKADLRAAIQTML 620
+ED F + G P L F G+ +V+ +L A+++ L
Sbjct: 117 SFEDEFER------LFGTPQG--------LDFEHLAKAYGLEYRRVSSLDELEQALESAL 162
Query: 621 DTPGPYLLDV 630
GP++++V
Sbjct: 163 AQDGPHVIEV 172
>gnl|CDD|239470 cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family),
2-oxoglutarate ferredoxin oxidoreductase (OGFOR)
subfamily, TPP-binding module; OGFOR catalyzes the
oxidative decarboxylation of 2-oxo-acids, with
ferredoxin acting as an electron acceptor. In the TCA
cycle, OGFOR catalyzes the oxidative decarboxylation of
2-oxoglutarate to succinyl-CoA. In the reductive
tricarboxylic acid cycle found in the anaerobic
autotroph Hydrogenobacter thermophilus, OGFOR catalyzes
the reductive carboxylation of succinyl-CoA to produce
2-oxoglutarate. Thauera aromatica OGFOR has been shown
to provide reduced ferredoxin to benzoyl-CoA reductase,
a key enzyme in the anaerobic metabolism of aromatic
compounds. OGFOR is dependent on TPP and a divalent
metal cation for activity.
Length = 193
Score = 35.2 bits (82), Expect = 0.052
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 18/109 (16%)
Query: 459 IQVLDELTNGE---AIISTGVGQHQMWAAQFYKYRRPRQWLTSGGL-GAMGFGLPAAIGA 514
+ L EL ++S G+G +++ Y + G G L A G
Sbjct: 15 AKALAELGIDPEKVVVVS-GIGC----SSRLPYY------FNTYGFHTLHGRALAVATGV 63
Query: 515 AVANPDAIIVDI--DGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGM 561
+ANPD ++ + DGD + I + + + I +++ NNQ G+
Sbjct: 64 KLANPDLTVIVVSGDGDLAAIGGNHFIHAAR-RNIDITVIVHNNQIYGL 111
>gnl|CDD|179177 PRK00945, PRK00945, acetyl-CoA decarbonylase/synthase complex
subunit epsilon; Provisional.
Length = 171
Score = 33.8 bits (78), Expect = 0.13
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 272 PKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEEL----RKFVELTGIPVAST 322
PK V + +I ++K+P+L VG L EEL K + IPVA+T
Sbjct: 16 PKHAKIVSPKIAAMMIKKAKRPLLVVGSL-LLDDEELLDRAVKIAKKANIPVAAT 69
>gnl|CDD|129415 TIGR00315, cdhB, CO dehydrogenase/acetyl-CoA synthase complex,
epsilon subunit. Nomenclature follows the description
for Methanosarcina thermophila. The complex is also
found in Archaeoglobus fulgidus, not considered a
methanogen, but is otherwise generally associated with
methanogenesis [Energy metabolism, Chemoautotrophy].
Length = 162
Score = 32.5 bits (74), Expect = 0.31
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 272 PKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVAST 322
PK + V + + +I +K+P+L VG L E + KF+E +PV +T
Sbjct: 9 PKHATLVSPKLVAMMIKRAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVAT 61
>gnl|CDD|147245 pfam04971, Lysis_S, Lysis protein S. The lysis S protein is a
cytotoxic protein forming holes in membranes causing
cell lysis. The action of Lysis S is independent of the
proportion of acidic phospholipids in the membrane.
Length = 68
Score = 30.3 bits (68), Expect = 0.39
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 462 LDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGL 508
+D++T G A ++ W Q P QW G LG++ FGL
Sbjct: 1 MDKITTGVAYGTSAGSA-GYWFLQLLDKVSPSQWAAIGVLGSLVFGL 46
>gnl|CDD|237006 PRK11867, PRK11867, 2-oxoglutarate ferredoxin oxidoreductase
subunit beta; Reviewed.
Length = 286
Score = 32.5 bits (75), Expect = 0.55
Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 23/69 (33%)
Query: 505 GFGLPAAIGAAVANPD--AIIVDIDGDGS------FI----MNVQELATIKVEKLPIKIL 552
G L A G +ANPD I+V DGD FI N+ I +
Sbjct: 72 GRALAIATGLKLANPDLTVIVVTGDGDALAIGGNHFIHALRRNID-----------ITYI 120
Query: 553 LLNNQHLGM 561
L NNQ G+
Sbjct: 121 LFNNQIYGL 129
>gnl|CDD|236036 PRK07512, PRK07512, L-aspartate oxidase; Provisional.
Length = 513
Score = 32.6 bits (75), Expect = 0.79
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 358 LLAFGVRFDDRVTGK----LEAFASRAKIVHIDIDSA 390
LL GV FD G+ LEA SR +IVH+ D A
Sbjct: 98 LLRLGVPFDRDADGRLALGLEAAHSRRRIVHVGGDGA 134
>gnl|CDD|177069 CHL00149, odpA, pyruvate dehydrogenase E1 component alpha subunit;
Reviewed.
Length = 341
Score = 32.1 bits (73), Expect = 0.92
Identities = 47/169 (27%), Positives = 66/169 (39%), Gaps = 47/169 (27%)
Query: 453 IPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAI 512
+PP+ V+ EL E S G G + + P +L GG +G G+P A+
Sbjct: 90 VPPK---NVMAELFGKETGCSRGRG------GSMHIFSAPHNFL--GGFAFIGEGIPIAL 138
Query: 513 GAA-----------VANPDAIIVDIDGDGSFIMNVQELATIKVE---KLPIKILLLNNQ- 557
GAA P + GDG+ N Q + + KLPI ++ NNQ
Sbjct: 139 GAAFQSIYRQQVLKEVQPLRVTACFFGDGT-TNNGQFFECLNMAVLWKLPIIFVVENNQW 197
Query: 558 HLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQV 606
+GM AH S P + K AEA G+PG +V
Sbjct: 198 AIGM-------------AH-------HRSTSIPEIHKKAEAFGLPGIEV 226
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional.
Length = 3956
Score = 32.4 bits (74), Expect = 1.1
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 18/98 (18%)
Query: 37 LPLSHNFGKPNLRIITSSLPKPSAASSTTIAQTVITSPETNFSSRFAPDQPRKGADILVE 96
LPL+ N GK + + +LPKP A++ Q +P+T R A AD+L
Sbjct: 999 LPLTPN-GKLDRK----ALPKPDASA----VQATFVAPQTELEKRLA----AIWADVL-- 1043
Query: 97 ALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRH 134
+ER G+TD F GG S+ Q ++R +R L
Sbjct: 1044 KVERVGLTDNFFELGGHSLLATQVISR---VRQRLGIQ 1078
>gnl|CDD|218109 pfam04488, Gly_transf_sug, Glycosyltransferase sugar-binding region
containing DXD motif. The DXD motif is a short
conserved motif found in many families of
glycosyltransferases, which add a range of different
sugars to other sugars, phosphates and proteins.
DXD-containing glycosyltransferases all use nucleoside
diphosphate sugars as donors and require divalent
cations, usually manganese. The DXD motif is expected to
play a carbohydrate binding role in sugar-nucleoside
diphosphate and manganese dependent
glycosyltransferases.
Length = 93
Score = 29.2 bits (66), Expect = 1.8
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 517 ANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHL 559
+PD +V ++ D I+++ L + L LL
Sbjct: 14 LHPDYCVVVLNDDLDKILDINFLKSDTPWFLEAYSLLPLFAAK 56
>gnl|CDD|183347 PRK11866, PRK11866, 2-oxoacid ferredoxin oxidoreductase subunit
beta; Provisional.
Length = 279
Score = 30.9 bits (70), Expect = 1.9
Identities = 26/101 (25%), Positives = 38/101 (37%), Gaps = 14/101 (13%)
Query: 464 ELTNGEAIISTGVGQH-QMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPD-- 520
+ ++ +G+G + +F T G G G LP A G ANP
Sbjct: 30 GIPPENVVVVSGIGCSSNL--PEFLN--------TYGIHGIHGRVLPIATGVKWANPKLT 79
Query: 521 AIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGM 561
I DGDG I + L + I ++ NNQ G+
Sbjct: 80 VIGYGGDGDGYGI-GLGHLPHAARRNVDITYIVSNNQVYGL 119
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional.
Length = 5163
Score = 31.5 bits (71), Expect = 2.1
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 15/87 (17%)
Query: 37 LPLSHNFGKPNLRIITSSLPKPSAASSTTIAQTVITSPETNFSSRFAPDQPRKGADILVE 96
+PL+ PN ++ +LP+P AA + Q +P R A AD+L
Sbjct: 3525 MPLT-----PNGKLDRKALPRPDAA----LLQQDYVAPVNELERRLAAIW----ADVL-- 3569
Query: 97 ALERQGVTDVFAYPGGASMEIHQALTR 123
LE+ G+TD F GG S+ Q ++R
Sbjct: 3570 KLEQVGLTDNFFELGGDSIISLQVVSR 3596
>gnl|CDD|204159 pfam09179, TilS, TilS substrate binding domain. This domain is
found in the tRNA(Ile) lysidine synthetase (TilS)
protein.
Length = 69
Score = 28.3 bits (64), Expect = 2.5
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 275 PSEVHLEQIVRLISESK---KPVLYVGGGCL 302
PS+ LE+I+R + +K +P L +GGG L
Sbjct: 30 PSQAQLEEILRQLLLAKEDAQPQLPLGGGEL 60
>gnl|CDD|233764 TIGR02177, PorB_KorB, 2-oxoacid:acceptor oxidoreductase, beta
subunit, pyruvate/2-ketoisovalerate family. A number of
anaerobic and microaerophilic species lack pyruvate
dehydrogenase and have instead a four subunit,
oxygen-sensitive pyruvate oxidoreductase, with either
ferredoxins or flavodoxins used as the acceptor. Several
related four-subunit enzymes may exist in the same
species. This model describes a subfamily of beta
subunits, representing mostly pyruvate and
2-ketoisovalerate specific enzymes.
Length = 287
Score = 30.5 bits (69), Expect = 2.6
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 497 TSGGLGAMGFGLPAAIGAAVANPD--AIIVDIDGDGSFIMNVQELATIKVEKLPIKILLL 554
+G G G LP A G +ANP I+V DGD I +A + + I +++
Sbjct: 48 VNGFHGLHGRALPVATGIKLANPHLKVIVVGGDGDLYGIGGNHFVAAGR-RNVDITVIVH 106
Query: 555 NNQHLGM 561
+NQ G+
Sbjct: 107 DNQVYGL 113
>gnl|CDD|192267 pfam09364, XFP_N, XFP N-terminal domain. Bacterial enzyme splits
fructose-6-P and/or xylulose-5-P with the aid of
inorganic phosphate into either acetyl-P and
erythrose-4-P and/or acetyl-P and glyeraldehyde-3-P
EC:4.1.2.9, EC:4.1.2.22. This family is distantly
related to transketolases e.g. pfam02779.
Length = 379
Score = 30.5 bits (69), Expect = 2.9
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 502 GAMGFGLPAAIGAAVANPDAIIVDIDGDG 530
G +G+ L A GA NPD I+ + GDG
Sbjct: 140 GELGYALSHAYGAVFDNPDLIVACVVGDG 168
>gnl|CDD|129266 TIGR00162, TIGR00162, TIGR00162 family protein. This model
represents one out of two closely related ortholgous
sets of proteins that, so far, are found only in but are
universal among the Archaea. This ortholog set includes
MJ1210 from Methanococcus jannaschii and AF0525 from
Archaeoglobus fulgidus while excluding MJ0106 and AF1251
[Hypothetical proteins, Conserved].
Length = 188
Score = 29.8 bits (67), Expect = 2.9
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 8/66 (12%)
Query: 101 QGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEG----YARSSGKPGICI 156
+ V + + Y S E+ + L V R GGI A G + G PG C+
Sbjct: 61 KLVEEPYVYGAATSPELVEELKE----HGVKFREPGGGIIGASGLLLGVSELEGIPGACL 116
Query: 157 ATSGPG 162
PG
Sbjct: 117 MGETPG 122
>gnl|CDD|214536 smart00142, PI3K_C2, Phosphoinositide 3-kinase, region postulated
to contain C2 domain. Outlier of C2 family.
Length = 100
Score = 28.5 bits (64), Expect = 3.1
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 256 PNWNQPIKLPGYMSRLPKE 274
WN+ + P +S LP+E
Sbjct: 62 VKWNEWLTFPIQISDLPRE 80
>gnl|CDD|234019 TIGR02800, propeller_TolB, tol-pal system beta propeller repeat
protein TolB. Members of this protein family are the
TolB periplasmic protein of Gram-negative bacteria. TolB
is part of the Tol-Pal (peptidoglycan-associated
lipoprotein) multiprotein complex, comprising five
envelope proteins, TolQ, TolR, TolA, TolB and Pal, which
form two complexes. The TolQ, TolR and TolA
inner-membrane proteins interact via their transmembrane
domains. The {beta}-propeller domain of the periplasmic
protein TolB is responsible for its interaction with
Pal. TolB also interacts with the outer-membrane
peptidoglycan-associated proteins Lpp and OmpA. TolA
undergoes a conformational change in response to changes
in the proton-motive force, and interacts with Pal in an
energy-dependent manner. The C-terminal periplasmic
domain of TolA also interacts with the N-terminal domain
of TolB. The Tol-PAL system is required for bacterial
outer membrane integrity. E. coli TolB is involved in
the tonB-independent uptake of group A colicins
(colicins A, E1, E2, E3 and K), and is necessary for the
colicins to reach their respective targets after initial
binding to the bacteria. It is also involved in uptake
of filamentous DNA. Study of its structure suggest that
the TolB protein might be involved in the recycling of
peptidoglycan or in its covalent linking with
lipoproteins. The Tol-Pal system is also implicated in
pathogenesis of E. coli, Haemophilus ducreyi ,
Salmonella enterica and Vibrio cholerae, but the
mechanism(s) is unclear [Transport and binding proteins,
Other, Cellular processes, Pathogenesis].
Length = 417
Score = 30.3 bits (69), Expect = 3.9
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 7/60 (11%)
Query: 68 QTVITSPETNFSSRFAPDQPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNI 127
+ V + P N + F+PD + L +L + G D++ ++ + LT I
Sbjct: 227 EKVASFPGMNGAPAFSPDGSK-----LAVSLSKDGNPDIYVMD-LDGKQLTR-LTNGPGI 279
>gnl|CDD|236421 PRK09231, PRK09231, fumarate reductase flavoprotein subunit;
Validated.
Length = 582
Score = 30.0 bits (68), Expect = 4.2
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 501 LGAMGFGLPAAIGAAVANPDAII 523
+GA G GL AAI AA ANP+ I
Sbjct: 10 IGAGGAGLRAAIAAAEANPNLKI 32
>gnl|CDD|235604 PRK05778, PRK05778, 2-oxoglutarate ferredoxin oxidoreductase
subunit beta; Validated.
Length = 301
Score = 29.8 bits (68), Expect = 4.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 508 LPAAIGAAVANPDAIIVDIDGDG 530
+ A GA +ANPD ++ + GDG
Sbjct: 76 IAFATGAKLANPDLEVIVVGGDG 98
>gnl|CDD|238218 cd00368, Molybdopterin-Binding, Molybdopterin-Binding (MopB) domain
of the MopB superfamily of proteins, a large, diverse,
heterogeneous superfamily of enzymes that, in general,
bind molybdopterin as a cofactor. The MopB domain is
found in a wide variety of molybdenum- and
tungsten-containing enzymes, including formate
dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of
nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide
reductase (DMSOR), thiosulfate reductase,
formylmethanofuran dehydrogenase, and arsenite oxidase.
Molybdenum is present in most of these enzymes in the
form of molybdopterin, a modified pterin ring with a
dithiolene side chain, which is responsible for ligating
the Mo. In many bacterial and archaeal species,
molybdopterin is in the form of a dinucleotide, with two
molybdopterin dinucleotide units per molybdenum. These
proteins can function as monomers, heterodimers, or
heterotrimers, depending on the protein and organism.
Also included in the MopB superfamily is the
eukaryotic/eubacterial protein domain family of the
75-kDa subunit/Nad11/NuoG (second domain) of respiratory
complex 1/NADH-quinone oxidoreductase which is
postulated to have lost an ancestral formate
dehydrogenase activity and only vestigial sequence
evidence remains of a molybdopterin binding site.
Length = 374
Score = 30.0 bits (68), Expect = 4.6
Identities = 22/115 (19%), Positives = 41/115 (35%), Gaps = 13/115 (11%)
Query: 281 EQIVRLISESKKPVLYVGGGCLNSSEE---LRKFVELTGIPVASTLMGLGSFPGTDELSL 337
E++ + + + GG S+EE L+K + G + L +L
Sbjct: 82 EKLKEIREKYGPDAIAFYGGGGASNEEAYLLQKLLRALGSNNVDSHARLCHASAVA--AL 139
Query: 338 QMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTG------KLEAFASRAKIVHID 386
+ G ++ +DL+L +G + T A AK++ ID
Sbjct: 140 KAFGGGAPTNTLADIENADLILLWGS--NPAETHPVLAARLRRAKKRGAKLIVID 192
>gnl|CDD|132933 cd07022, S49_Sppa_36K_type, Signal peptide peptidase A (SppA) 36K
type, a serine protease, has catalytic Ser-Lys dyad.
Signal peptide peptidase A (SppA; Peptidase S49;
Protease IV) 36K type: SppA is found in all three
domains of life and is involved in the cleavage of
signal peptides after their removal from the precursor
proteins by signal peptidases. Members in this subfamily
are all bacterial and include sohB peptidase and protein
C. These are sometimes referred to as 36K type since
they contain only one domain, unlike E. coli SppA that
also contains an amino-terminal domain. Site-directed
mutagenesis and sequence analysis have shown these SppAs
to be serine proteases. The predicted active site serine
for members in this family occurs in a transmembrane
domain. Mutagenesis studies also suggest that the
catalytic center comprises a Ser-Lys dyad and not the
usual Ser-His-Asp catalytic triad found in the majority
of serine proteases.
Length = 214
Score = 29.5 bits (67), Expect = 5.0
Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 507 GLPAAIGAAVANPD--AIIVDIDGDGSFIMNVQELA 540
G+ AAI AA+A+PD AI++DID G + V ELA
Sbjct: 29 GIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELA 64
>gnl|CDD|226519 COG4032, COG4032, Predicted thiamine-pyrophosphate-binding protein
[General function prediction only].
Length = 172
Score = 29.0 bits (65), Expect = 5.8
Identities = 30/168 (17%), Positives = 63/168 (37%), Gaps = 22/168 (13%)
Query: 90 GADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS 149
++ + EA++ G+ + P + + I + E+ G+ G +
Sbjct: 6 PSEAVYEAMKDAGIDFACSLPCDNLKNLLPLVEEDPEIPEIPVTREEEGVGICAGAYLAG 65
Query: 150 GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSI 209
KP I + SG G N ++ LA + +T ++P M+ + +E +
Sbjct: 66 KKPAILMQNSGLG--NSINALAS--------LYVTYKIPLLMLASHRGVLKEGIEAQVPM 115
Query: 210 TKHNYLVLDVDDIP-----------RIVREAFLLA-TSGRPGPVLIDV 245
+ +L+ ++P ++ A L A + RP VL+
Sbjct: 116 GRALPKILEGLELPTYTIIGPEEALPLIENAILDAFENSRPVAVLLSP 163
>gnl|CDD|216160 pfam00864, P2X_receptor, ATP P2X receptor.
Length = 374
Score = 29.6 bits (67), Expect = 6.1
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 347 YANY-----AVDKSDLLLAFGVRFDDRVTGK 372
+A Y + L+ A+G+RFD V GK
Sbjct: 282 FAKYYKDANGTEYRTLIKAYGIRFDILVFGK 312
>gnl|CDD|224792 COG1880, CdhB, CO dehydrogenase/acetyl-CoA synthase epsilon subunit
[Energy production and conversion].
Length = 170
Score = 28.6 bits (64), Expect = 6.3
Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 29/130 (22%)
Query: 286 LISESKKPVLYVGGGCLNSSEELR----KFVELTGIPVASTLMGLGSFPGTDELSLQMLG 341
+I ++K+P+L VG L+ EEL K +E IP+ +T +G+ G S +
Sbjct: 31 MIKKAKRPLLIVGPLALD--EELLELAVKIIEKFNIPIVATASSMGNLIGRGIGSEYINL 88
Query: 342 MHGTVYANYAVDKS----------DLLLAFGVRFD--DRVTGKLEAFASRAKIVHIDIDS 389
T Y D + DL++ G + +V L+ F + I I ID
Sbjct: 89 HAIT---QYLTDPNWPGFDGNGNYDLVIFLGSIYYYLSQVLSGLKHF---SNIKTIAID- 141
Query: 390 AEIGKNKQPH 399
+ QP+
Sbjct: 142 ----RYYQPN 147
>gnl|CDD|183349 PRK11869, PRK11869, 2-oxoacid ferredoxin oxidoreductase subunit
beta; Provisional.
Length = 280
Score = 29.4 bits (66), Expect = 6.5
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 10/73 (13%)
Query: 458 AIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVA 517
A+ L+ I+S G+GQ AA+ P +G G +PAA
Sbjct: 26 ALSELNLKPRQVVIVS-GIGQ----AAKM-----PHYINVNGFHTLHGRAIPAATAVKAT 75
Query: 518 NPDAIIVDIDGDG 530
NP+ ++ GDG
Sbjct: 76 NPELTVIAEGGDG 88
>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1.
Length = 546
Score = 29.6 bits (66), Expect = 6.6
Identities = 37/169 (21%), Positives = 67/169 (39%), Gaps = 30/169 (17%)
Query: 455 PQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGL------------- 501
P + +Q + + A + G+ + RR + L S GL
Sbjct: 31 PDFVLQDAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNV 90
Query: 502 ---GAMGFGLPAAIGA-AVANPDAIIVDI----DGDGSFIMNVQELATIKVEKLPIKILL 553
G + G+ AA G + ANP A+ +I + G+ ++ + KV+ L + +++
Sbjct: 91 AEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLGLPVIV 150
Query: 554 LNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIP 602
L + + + W++ A+RA GD S EI L C +P
Sbjct: 151 LGEEKIEGAVNWKELLEAADRA----GDTSDNEEILQTDL-----CALP 190
>gnl|CDD|226466 COG3957, COG3957, Phosphoketolase [Carbohydrate transport and
metabolism].
Length = 793
Score = 29.7 bits (67), Expect = 6.9
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 497 TSGGL---GAMGFGLPAAIGAAVANPDAIIVDIDGDG 530
T G + G +G+ L A GAA NPD I+ + GDG
Sbjct: 145 TPGSIHEGGELGYALSHAYGAAFDNPDLIVACVVGDG 181
>gnl|CDD|215436 PLN02815, PLN02815, L-aspartate oxidase.
Length = 594
Score = 29.3 bits (66), Expect = 7.1
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 358 LLAFGVRFDDRVTGKL----EAFASRAKIVHI-DIDSAEI 392
L+A G FD G L E S +IVH D+ EI
Sbjct: 118 LIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREI 157
>gnl|CDD|223108 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism].
Length = 518
Score = 29.5 bits (67), Expect = 7.2
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 356 DLLLAFGVRFDDRVTGK----LEAFASRAKIVHID 386
+ L+ GV FD G+ E SR +I+H
Sbjct: 94 EWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAA 128
>gnl|CDD|226664 COG4206, BtuB, Outer membrane cobalamin receptor protein [Coenzyme
metabolism].
Length = 608
Score = 29.3 bits (66), Expect = 7.5
Identities = 25/156 (16%), Positives = 41/156 (26%), Gaps = 37/156 (23%)
Query: 357 LLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRI 416
L A RFDD + + D +G +
Sbjct: 221 LNGALEHRFDDAWSLFARGLGYDNR-NDYDAYGGPLGDTAELDSQS-------------- 265
Query: 417 LGGKDAEGRFDFSAWREEL------------DEQKVKYPLSFKTFEESIPPQYAIQVLDE 464
D R+D W+ L +Y +T QY +Q ++
Sbjct: 266 ---GDVGTRYDGEDWKSTLQLSYSDDKSYNYTPGYGRYDSRDET------RQYNVQWQND 316
Query: 465 LTNGEAIISTGV-GQHQMWAAQFYKYRRPRQWLTSG 499
+T G + GV Q Q + + + T
Sbjct: 317 ITFGHGNVLAGVDWQKQTITPKTADFDEYDRRNTGI 352
>gnl|CDD|224732 COG1819, COG1819, Glycosyl transferases, related to
UDP-glucuronosyltransferase [Carbohydrate transport and
metabolism / Signal transduction mechanisms].
Length = 406
Score = 28.9 bits (65), Expect = 8.1
Identities = 28/177 (15%), Positives = 50/177 (28%), Gaps = 33/177 (18%)
Query: 138 GIFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGT--- 194
+ AR G P + I + + L A L P V I G++P +
Sbjct: 104 ARLSLGLAARLLGIPVVGINVA------PYTPLPAAGLPLPP-VGIAGKLPIPLYPLPPR 156
Query: 195 ---DAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQ 251
+ + +I R+ P +
Sbjct: 157 LVRPLIFARSWLPKLVVRRNLGLELGL-PNIRRLFAS--------GPLLEIAYTDV---- 203
Query: 252 QLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEEL 308
L P P P L + +E+ + +P++YV G + ++ EL
Sbjct: 204 -LFPPGDRLPFIGPYIGPLLGEAANELPYWIP------ADRPIVYVSLGTVGNAVEL 253
>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth
Factor Receptor-like Protein Tyrosine Kinases. Protein
Tyrosine Kinase (PTK) family; Epidermal Growth Factor
Receptor (EGFR) subfamily; catalytic (c) domain. EGFR
(HER, ErbB) subfamily members include EGFR (HER1,
ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and
similar proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
The EGFR proteins are receptor tyr kinases (RTKs)
containing an extracellular EGF-related ligand-binding
region, a transmembrane helix, and a cytoplasmic region
with a tyr kinase domain and a regulatory C-terminal
tail. Unlike other tyr kinases, phosphorylation of the
activation loop of EGFR proteins is not critical to
their activation. Instead, they are activated by
ligand-induced dimerization, resulting in the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. Collectively, they can recognize a variety of
ligands including EGF, TGFalpha, and neuregulins, among
others. All four subfamily members can form homo- or
heterodimers. HER3 contains an impaired kinase domain
and depends on its heterodimerization partner for
activation. EGFR subfamily members are involved in
signaling pathways leading to a broad range of cellular
responses including cell proliferation, differentiation,
migration, growth inhibition, and apoptosis. Gain of
function alterations, through their overexpression,
deletions, or point mutations in their kinase domains,
have been implicated in various cancers. These receptors
are targets of many small molecule inhibitors and
monoclonal antibodies used in cancer therapy.
Length = 279
Score = 28.9 bits (65), Expect = 8.6
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 431 WREELDEQKVKYPLSFKTFEESIPPQYAIQVLDE 464
W E + KVK P++ K E P+ ++LDE
Sbjct: 28 WIPEGE--KVKIPVAIKVLREETSPKANKEILDE 59
>gnl|CDD|238969 cd02011, TPP_PK, Thiamine pyrophosphate (TPP) family,
Phosphoketolase (PK) subfamily, TPP-binding module; PK
catalyzes the conversion of D-xylulose 5-phosphate and
phosphate to acetyl phosphate,
D-glyceraldehyde-3-phosphate and H2O. This enzyme
requires divalent magnesium ions and TPP for activity.
Length = 227
Score = 28.5 bits (64), Expect = 9.9
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 502 GAMGFGLPAAIGAAVANPDAIIVDIDGDG 530
G +G+ L A GA NPD I+ + GDG
Sbjct: 62 GELGYSLSHAYGAVFDNPDLIVACVVGDG 90
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.395
Gapped
Lambda K H
0.267 0.0711 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 34,746,999
Number of extensions: 3539138
Number of successful extensions: 4251
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3938
Number of HSP's successfully gapped: 157
Length of query: 661
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 558
Effective length of database: 6,369,140
Effective search space: 3553980120
Effective search space used: 3553980120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.7 bits)