RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 048725
(661 letters)
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis
thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A*
1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Length = 590
Score = 1032 bits (2670), Expect = 0.0
Identities = 500/584 (85%), Positives = 544/584 (93%)
Query: 78 FSSRFAPDQPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQG 137
F SRFAPDQPRKGADILVEALERQGV VFAYPGGASMEIHQALTRS++IRNVLPRHEQG
Sbjct: 2 FISRFAPDQPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQG 61
Query: 138 GIFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAF 197
G+FAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAF
Sbjct: 62 GVFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAF 121
Query: 198 QETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPN 257
QETPIVEVTRSITKHNYLV+DV+DIPRI+ EAF LATSGRPGPVL+DVPKDIQQQLA+PN
Sbjct: 122 QETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKDIQQQLAIPN 181
Query: 258 WNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGI 317
W Q ++LPGYMSR+PK P + HLEQIVRLISESKKPVLYVGGGCLNSS+EL +FVELTGI
Sbjct: 182 WEQAMRLPGYMSRMPKPPEDSHLEQIVRLISESKKPVLYVGGGCLNSSDELGRFVELTGI 241
Query: 318 PVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFA 377
PVASTLMGLGS+P DELSL MLGMHGTVYANYAV+ SDLLLAFGVRFDDRVTGKLEAFA
Sbjct: 242 PVASTLMGLGSYPADDELSLHMLGMHGTVYANYAVEHSDLLLAFGVRFDDRVTGKLEAFA 301
Query: 378 SRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDE 437
SRAKIVHIDIDSAEIGKNK PHVSVC D+KLAL+G+N++L + E + DF WR EL+
Sbjct: 302 SRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLENRAEELKLDFGVWRNELNV 361
Query: 438 QKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLT 497
QK K+PLSFKTF E+IPPQYAI+VLDELT+G+AIISTGVGQHQMWAAQFY Y++PRQWL+
Sbjct: 362 QKQKFPLSFKTFGEAIPPQYAIKVLDELTDGKAIISTGVGQHQMWAAQFYNYKKPRQWLS 421
Query: 498 SGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQ 557
SGGLGAMGFGLPAAIGA+VANPDAI+VDIDGDGSFIMNVQELATI+VE LP+K+LLLNNQ
Sbjct: 422 SGGLGAMGFGLPAAIGASVANPDAIVVDIDGDGSFIMNVQELATIRVENLPVKVLLLNNQ 481
Query: 558 HLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQ 617
HLGMVMQWEDRFYKANRAHT+LGDP++E EIFPNML FA ACGIP A+VT+KADLR AIQ
Sbjct: 482 HLGMVMQWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVTKKADLREAIQ 541
Query: 618 TMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFKDVITEGDGRTQY 661
TMLDTPGPYLLDVI PHQEHVLPMIPSGG F DVITEGDGR ++
Sbjct: 542 TMLDTPGPYLLDVICPHQEHVLPMIPSGGTFNDVITEGDGRLEH 585
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A
{Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5
c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Length = 677
Score = 882 bits (2281), Expect = 0.0
Identities = 256/674 (37%), Positives = 366/674 (54%), Gaps = 40/674 (5%)
Query: 7 HTATFTNPPPSSFISTTSKKSALFSISKFTLPLSHNFGKPNLRIITSSLPKPSAASSTTI 66
H ++ P S T + K + L + + P A + +
Sbjct: 6 HHSSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMGSAPSFNVDPLEQPAEPSKL 65
Query: 67 AQTVITSPETNFSSRFAPDQPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNN 126
A+ + P+ + S G I E + RQ V VF YPGGA + ++ A+ S+
Sbjct: 66 AKKLRAEPDMDTSF-----VGLTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDK 120
Query: 127 IRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQ 186
VLP+HEQG AEGYAR+SGKPG+ + TSGPGATN+V+ +ADA D +P+V TGQ
Sbjct: 121 FNFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQ 180
Query: 187 VPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVP 246
VP IGTDAFQE +V ++RS TK N +V V+++P + EAF +ATSGRPGPVL+D+P
Sbjct: 181 VPTSAIGTDAFQEADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDLP 240
Query: 247 KDIQQQLAVPNWNQPIKLPGYMSRLP--KEPSEVHLEQI---VRLISESKKPVLYVGGGC 301
KD+ + LP + E ++ I LI+ +KKPVLYVG G
Sbjct: 241 KDVTAAILRNPIPTKTTLPSNALNQLTSRAQDEFVMQSINKAADLINLAKKPVLYVGAGI 300
Query: 302 LNS---SEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLL 358
LN L++ + IPV +TL GLGSF D SL MLGMHG AN AV +DL+
Sbjct: 301 LNHADGPRLLKELSDRAQIPVTTTLQGLGSFDQEDPKSLDMLGMHGCATANLAVQNADLI 360
Query: 359 LAFGVRFDDRVTGKLEAFASRAK---------IVHIDIDSAEIGKNKQPHVSVCADLKLA 409
+A G RFDDRVTG + FA A+ I+H ++ I K Q ++V D
Sbjct: 361 IAVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQIAVEGDATTN 420
Query: 410 LKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSF--KTFEESIPPQYAIQVLDELTN 467
L + + + S W ++++ K +YP ++ +T I PQ I+ L ++ N
Sbjct: 421 LGKMMSKIFPVK-----ERSEWFAQINKWKKEYPYAYMEETPGSKIKPQTVIKKLSKVAN 475
Query: 468 ---GEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIV 524
I++TGVGQHQMWAAQ + +R P ++TSGGLG MG+GLPAAIGA VA P+++++
Sbjct: 476 DTGRHVIVTTGVGQHQMWAAQHWTWRNPHTFITSGGLGTMGYGLPAAIGAQVAKPESLVI 535
Query: 525 DIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSR 584
DIDGD SF M + EL++ P+KIL+LNN+ GMV QW+ FY+ +HT+ +
Sbjct: 536 DIDGDASFNMTLTELSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHRYSHTHQLN--- 592
Query: 585 ESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPS 644
P+ +K AEA G+ G +V ++ +L A ++ + T GP LL+V + VLPM+
Sbjct: 593 -----PDFIKLAEAMGLKGLRVKKQEELDAKLKEFVSTKGPVLLEVEVDKKVPVLPMVAG 647
Query: 645 GGAFKDVITEGDGR 658
G + I
Sbjct: 648 GSGLDEFINFDPEV 661
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains;
HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Length = 589
Score = 875 bits (2263), Expect = 0.0
Identities = 145/580 (25%), Positives = 240/580 (41%), Gaps = 24/580 (4%)
Query: 88 RKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNN-IRNVLPRHEQGGIFAAEGYA 146
++GAD++VEALE G V + G S + A ++S+ R + P E GG + GY
Sbjct: 4 KRGADLIVEALEEYGTEQVVGFIGHTSHFVADAFSKSHLGKRVINPATELGGAWMVNGYN 63
Query: 147 RSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIG-TDAFQETPIVEV 205
+ A G L + + +A +P V I R+ G ++A Q+ P
Sbjct: 64 YVKDRSAAVGAWHCVGNLLLHAAMQEARTGRIPAVHIGLNSDGRLAGRSEAAQQVPWQSF 123
Query: 206 TRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLP 265
T I + V +D + + EAF +A GP +D+P D+ P
Sbjct: 124 T-PIARSTQRVERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFDLTADQIDDKALVPRGAT 182
Query: 266 GYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNS--SEELRKFVELTGIPVASTL 323
S L +V + + +K PV+ GGG S SE L K E+ G+PV +T
Sbjct: 183 RAKSVLHAPNEDV--REAAAQLVAAKNPVILAGGGVARSGGSEALLKLAEMVGVPVVTTS 240
Query: 324 MGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIV 383
G G FP T L++ G G AN + +D +L G R D + K V
Sbjct: 241 TGAGVFPETHALAMGSAGFCGWKSANDMMAAADFVLVLGSRLSDWGIAQ-GYITKMPKFV 299
Query: 384 HIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEG--RFDFSAWREELDEQKVK 441
H+D D A +G P +SV AD K ++ + +L G R+ + E +
Sbjct: 300 HVDTDPAVLGTFYFPLLSVVADAKTFMEQLIEVLPGTSGFKAVRYQERENFRQATEFRAA 359
Query: 442 YPLSFKTFEES----IPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLT 497
+ + E A+ + ++ E II T +G H + +RPR+ +T
Sbjct: 360 WDGWVREQESGDGMPASMFRAMAEVRKVQRPEDIIVTDIGNHTLPMFGGAILQRPRRLVT 419
Query: 498 SGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQ 557
S G +G G P A+GA +A P++ + GDG+ + E KLP+ ++ N+
Sbjct: 420 SMAEGILGCGFPMALGAQLAEPNSRVFLGTGDGALYYHFNEFRVAVEHKLPVITMVFTNE 479
Query: 558 HLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQ 617
G + + N ++ P+ + A+A G G V D+ A+Q
Sbjct: 480 SYGANWTLMNHQFGQNNWTEFMN---------PDWVGIAKAFGAYGESVRETGDIAGALQ 530
Query: 618 TMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFKDVITEGDG 657
+D+ P L+++ + + GG +++ +G
Sbjct: 531 RAIDSGKPALIEIPVSKTQGLASDPV-GGVGPNLLLKGRE 569
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate,
benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas
fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A*
3iaf_A* 3d7k_A*
Length = 563
Score = 833 bits (2154), Expect = 0.0
Identities = 141/571 (24%), Positives = 241/571 (42%), Gaps = 27/571 (4%)
Query: 90 GADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS 149
G +++V L + GV +F G I QA + + + RHE AAEGYAR+
Sbjct: 6 GGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHD-VPIIDTRHEAAAGHAAEGYARAG 64
Query: 150 GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETP-IVEVTRS 208
K G+ + T+G G TN V+ +A+A LD P++ +TG R T+ Q V +
Sbjct: 65 AKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAAP 124
Query: 209 ITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYM 268
ITK + V+ + IPR+V +A A S GPVL+D+P DI + L
Sbjct: 125 ITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWDILMNQIDEDSVIIPDLVLS- 183
Query: 269 SRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNS--SEELRKFVELTGIPVASTLMGL 326
P L+Q + L+ ++++PV+ +G + L FV TG+PV + GL
Sbjct: 184 -AHGARPDPADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVFADYEGL 242
Query: 327 GSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASR-AKIVHI 385
G + L + A DL+L G RF A+++ +
Sbjct: 243 SMLSGLPDAMRGGL-VQNLYSFAKADAAPDLVLMLGARFGLNTGHGSGQLIPHSAQVIQV 301
Query: 386 DIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLS 445
D D+ E+G+ + + + AD+ ++ + + D W ++ + + S
Sbjct: 302 DPDACELGRLQGIALGIVADVGGTIEALAQAT--AQDAAWPDRGDWCAKVTDLAQERYAS 359
Query: 446 FKTFEES---IPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLG 502
S + P +A QV+ + + + +W ++ +P +L G LG
Sbjct: 360 IAAKSSSEHALHPFHASQVIAKHVDAGVTVVADGALTYLWLSEVMSRVKPGGFLCHGYLG 419
Query: 503 AMGFGLPAAIGAAVANPDAI--IVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLG 560
+MG G A+GA VA+ +A + + GDGS ++ E T+ ++LP+ ++++NNQ G
Sbjct: 420 SMGVGFGTALGAQVADLEAGRRTILVTGDGSVGYSIGEFDTLVRKQLPLIVIIMNNQSWG 479
Query: 561 MVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTML 620
+ ++ NR + + A A G G V AA+ L
Sbjct: 480 ATLHFQQLAVGPNRVTGTRLEN-------GSYHGVAAAFGADGYHVDSVESFSAALAQAL 532
Query: 621 DTPGPYLLDVI-----FPHQEHVLPMIPSGG 646
P ++V P +E +L +
Sbjct: 533 AHNRPACINVAVALDPIPPEELILIGMDPFA 563
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase,
thiamin diphosphate, lyase; HET: PGE HE3; 2.00A
{Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
PDB: 1ozg_A* 1ozf_A*
Length = 566
Score = 824 bits (2132), Expect = 0.0
Identities = 139/574 (24%), Positives = 245/574 (42%), Gaps = 26/574 (4%)
Query: 86 QPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGY 145
Q GAD++V LE QGV VF PG ++ +L S+ IR + RHE F A
Sbjct: 9 QWAHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSS-IRIIPVRHEANAAFMAAAV 67
Query: 146 ARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEV 205
R +GK G+ + TSGPG +NL++G+A A + P+VA+ G V R Q V +
Sbjct: 68 GRITGKAGVALVTSGPGCSNLITGMATANSEGDPVVALGGAVKRADKAKQVHQSMDTVAM 127
Query: 206 TRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLP 265
+TK+ V D + +V AF A GRPG + +P+D+ P
Sbjct: 128 FSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQDVVDGPVSGKVLPASGAP 187
Query: 266 GYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNS--SEELRKFVELTGIPVASTL 323
+ ++Q+ +LI+++K P+ +G S+ LR+ +E + IPV ST
Sbjct: 188 QM-----GAAPDDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTY 242
Query: 324 MGLGSFPGTDE-LSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKI 382
G+ + +G+ + + +DL++ G + + A +
Sbjct: 243 QAAGAVNQDNFSRFAGRVGLFNNQAGDRLLQLADLVICIGYSPVEYEPAMW--NSGNATL 300
Query: 383 VHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKY 442
VHID+ A +N P V + D+ L + + + + + + Q+
Sbjct: 301 VHIDVLPAYEERNYTPDVELVGDIAGTLNKLAQNIDHRLVLSP-QAAEILRDRQHQRELL 359
Query: 443 PLSFKTFEE-SIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGL 501
+ ++ P ++ + ++ N + ++ +G +W A++ R RQ + S G
Sbjct: 360 DRRGAQLNQFALHPLRIVRAMQDIVNSDVTLTVDMGSFHIWIARYLYTFRARQVMISNGQ 419
Query: 502 GAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGM 561
MG LP AIGA + NP+ +V + GDG F+ + EL T K + L+ + M
Sbjct: 420 QTMGVALPWAIGAWLVNPERKVVSVSGDGGFLQSSMELETAVRLKANVLHLIWVDNGYNM 479
Query: 562 VMQWEDRFYKANR-AHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTML 620
V E++ Y R + G + +AE+ G G V L ++ +
Sbjct: 480 VAIQEEKKY--QRLSGVEFGP--------MDFKAYAESFGAKGFAVESAEALEPTLRAAM 529
Query: 621 DTPGPYLLDVIFPHQEHVLPMIPSGGAFKDVITE 654
D GP ++ + ++++ L M ++
Sbjct: 530 DVDGPAVVAIPVDYRDNPLLM--GQLHLSQILEH 561
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex,
transferase; HET: MSE TPP; 2.00A {Streptomyces
clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB:
1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Length = 573
Score = 817 bits (2112), Expect = 0.0
Identities = 143/588 (24%), Positives = 233/588 (39%), Gaps = 40/588 (6%)
Query: 83 APDQPRKGADILVEALERQGVTDVFAYPGGASMEI-HQALTRSNNIRNVLPRHEQGGIFA 141
AP A L+ L GV VF G + I + I VL RHE A
Sbjct: 7 APSGKPTAAHALLSRLRDHGVGKVFGVVGREAASILFDEV---EGIDFVLTRHEFTAGVA 63
Query: 142 AEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRR-MIGTDAFQET 200
A+ AR +G+P C AT GPG TNL +G+A ++LD P++A+ Q + D Q
Sbjct: 64 ADVLARITGRPQACWATLGPGMTNLSTGIATSVLDRSPVIALAAQSESHDIFPNDTHQCL 123
Query: 201 PIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAV--PNW 258
V + ++K+ + +I +V A A + GP I +P D+
Sbjct: 124 DSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVDLLGSSEGIDTTV 183
Query: 259 NQPIKLPGYMSRLPKEPSEVHLEQI---VRLISESKKPVLYVGGGCLNS--SEELRKFVE 313
P ++ + L++E+K PVL VG + S +R E
Sbjct: 184 PNPPANTPAKPVGV--VADGWQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALAE 241
Query: 314 LTGIPVASTLMGLGSFPGTDELSL-----QMLGMHGTVYANYAVDKSDLLLAFGVRFDDR 368
IPV +T + G P EL+ M G+ DL+L G + +
Sbjct: 242 RLNIPVITTYIAKGVLPVGHELNYGAVTGYMDGILNFPALQTMFAPVDLVLTVGYDYAED 301
Query: 369 VTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDF 428
+ + K V I I + +P V V D+ ++ A+ R D
Sbjct: 302 LRPSMWQKGIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETATASFGAKQRHDI 361
Query: 429 SAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTN-----GEAIISTGVGQHQMWA 483
R + E T+E+ + I ++ + GE I + +G + +
Sbjct: 362 EPLRARIAEFLADPE----TYEDGMRVHQVIDSMNTVMEEAAEPGEGTIVSDIGFFRHYG 417
Query: 484 AQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIK 543
F + +P +LTS G + G+G+PAAIGA +A PD I GDG F N +L TI
Sbjct: 418 VLFARADQPFGFLTSAGCSSFGYGIPAAIGAQMARPDQPTFLIAGDGGFHSNSSDLETIA 477
Query: 544 VEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPG 603
LPI +++NN G++ +++ + + + + AEA G+
Sbjct: 478 RLNLPIVTVVVNNDTNGLIELYQNIGHHRSHDPAVKFGG-------VDFVALAEANGVDA 530
Query: 604 AQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFKDV 651
+ T + +L AA++ + P+L++V + P G +
Sbjct: 531 TRATNREELLAALRKGAELGRPFLIEVPVNY-----DFQPGGFGALSI 573
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP),
thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE;
2.70A {Escherichia coli}
Length = 616
Score = 817 bits (2112), Expect = 0.0
Identities = 174/612 (28%), Positives = 287/612 (46%), Gaps = 25/612 (4%)
Query: 63 STTIAQTVITSPETNFSSRFAPDQPRKGADILVEALERQGVTDVFAYPGGASMEIHQALT 122
++ +S S A + D + LE++G+T F PG A + A+
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMAKMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAMR 61
Query: 123 RSNNIRNVLPRHEQGGIFAAEGYARSS-GKPGICIATSGPGATNLVSGLADALLDSVPLV 181
+ IR++L RH +G AEGY R++ G G+C+ TSGP T++++ L A DS+P++
Sbjct: 62 KHGGIRHILARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTDMITALYSASADSIPIL 121
Query: 182 AITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPV 241
ITGQ PR + + FQ I + + ++K V + +PR++++AF L SGRPGPV
Sbjct: 122 CITGQAPRARLHKEDFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPV 181
Query: 242 LIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQI---VRLISESKKPVLYVG 298
L+D+P D+Q + + LP Y P QI V ++ ++++PV+ G
Sbjct: 182 LVDLPFDVQVAEIEFDPDMYEPLPVYK---PA----ASRMQIEKAVEMLIQAERPVIVAG 234
Query: 299 GGCLNS--SEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTV-YANYAVDKS 355
GG +N+ + L++F ELT +PV TLMG G P EL M+G+ Y N + S
Sbjct: 235 GGVINADAAALLQQFAELTSVPVIPTLMGWGCIPDDHELMAGMVGLQTAHRYGNATLLAS 294
Query: 356 DLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINR 415
D++ G RF +R TG +E + KIVHIDI+ +IG+ P + + +D K AL +
Sbjct: 295 DMVFGIGNRFANRHTGSVEKYTEGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVE 354
Query: 416 ILGGKDAEGRF-DFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIIST 474
+ GR W + ++K + PQ + +++ + T
Sbjct: 355 VAQEMQKAGRLPCRKEWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGRDVCYVT 414
Query: 475 GVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIM 534
+G Q+ AAQ + R W+ G G +G+ +PAA+G A+P +V I GD F
Sbjct: 415 TIGLSQIAAAQMLHVFKDRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDFDFQF 474
Query: 535 NVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRES--EIFPNM 592
++ELA +P +L+NN +LG++ Q + F + + +
Sbjct: 475 LIEELAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDMDYCVQLAFENINSSEVNGYGVDH 534
Query: 593 LKFAEACGIPGAQVTRKADLRAAIQ----TMLDTPGPYLLDVIFPHQEHVLPMIPSGGAF 648
+K AE G +V + D+ A + M P +++VI + I G
Sbjct: 535 VKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQYRVPVVVEVI----LERVTNISMGSEL 590
Query: 649 KDVITEGDGRTQ 660
+V+ D
Sbjct: 591 DNVMEFEDIADN 602
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate,
flavoprotein, lyase, thiamine pyrophosphate; HET: TZD
ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3
c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A*
2jib_A*
Length = 568
Score = 794 bits (2053), Expect = 0.0
Identities = 131/575 (22%), Positives = 231/575 (40%), Gaps = 29/575 (5%)
Query: 90 GADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS 149
G +L++AL+ + ++ G + + R RHEQ +AA
Sbjct: 12 GFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDG-QRFYSFRHEQHAGYAASIAGYIE 70
Query: 150 GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGT--DAFQETPIVEVTR 207
GKPG+C+ S PG N V+ LA A + P++ ++G R ++ ++E + V R
Sbjct: 71 GKPGVCLTVSAPGFLNGVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVAR 130
Query: 208 SITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGY 267
K ++ + + DIP + A A SGRPG V +D+P + Q +
Sbjct: 131 PHCKASFRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAKLFGQTISVEEANKLLFKPI 190
Query: 268 MSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNS--SEELRKFVELTGIPVASTLMG 325
+ P+E + + LI +K+PV+ +G G + +E+R VE TGIP M
Sbjct: 191 DPAPAQIPAEDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEETGIPFLPMGMA 250
Query: 326 LGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVT-GKLEAFASR-AKIV 383
G P +A+ + D+ + G R + + GK + + K V
Sbjct: 251 KGLLPDNHP-------QSAAATRAFALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYV 303
Query: 384 HIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYP 443
IDI + E+ N+ V D+K A+ + + L G A + ++D K K
Sbjct: 304 QIDIQANEMDSNQPIAAPVVGDIKSAVSLLRKALKGAPKADAEWTGALKAKVDGNKAKLA 363
Query: 444 --LSFKTFEESIPPQYAIQVLDE--LTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSG 499
++ +T + ++ V+ + L N + + +PR+ L SG
Sbjct: 364 GKMTAETPSGMMNYSNSLGVVRDFMLANPDISLVNEGANALDNTRMIVDMLKPRKRLDSG 423
Query: 500 GLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHL 559
G MG G+ + AA A ++ ++GD +F + EL TI LP+ ++++NN
Sbjct: 424 TWGVMGIGMGYCVAAA-AVTGKPVIAVEGDSAFGFSGMELETICRYNLPVTVIIMNNG-- 480
Query: 560 GMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTM 619
G+ E + T L EA G G A+L+AA++
Sbjct: 481 GIYKGNEADPQPGVISCTRLTR--------GRYDMMMEAFGGKGYVANTPAELKAALEEA 532
Query: 620 LDTPGPYLLDVIFPHQEHVLPMIPSGGAFKDVITE 654
+ + P L++ + V + +
Sbjct: 533 VASGKPCLINAMIDPDAGVESGRIKSLNVVSKVGK 567
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship,
oxidation-reduct umpolung, thiamine diphosphate,
reaction intermediate; HET: TDM FAD GOL; 1.09A
{Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A*
2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Length = 603
Score = 790 bits (2042), Expect = 0.0
Identities = 127/571 (22%), Positives = 241/571 (42%), Gaps = 23/571 (4%)
Query: 89 KGADILVEALERQGVTDVFAYPGGASMEIHQAL-TRSNNIRNVLPRHEQGGIFAAEGYAR 147
+++ LE GV ++ PGG+ I AL + I + RHE+ G AA A+
Sbjct: 12 LAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAK 71
Query: 148 SSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTR 207
+GK G+C ++GPG T+L++GL DA D VP++A+ GQ + D FQE +
Sbjct: 72 LTGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYA 131
Query: 208 SITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLA-VPNWNQPIKLPG 266
+ +N ++ +P ++ EA A + + G ++ +P D+ Q +W
Sbjct: 132 DVADYNVTAVNAATLPHVIDEAIRRAYAHQ-GVAVVQIPVDLPWQQIPAEDWYASANSYQ 190
Query: 267 YMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGL 326
L EP + ++ + + +++P++Y G G + +EL + + IP+ ST
Sbjct: 191 T--PLLPEPDVQAVTRLTQTLLAAERPLIYYGIGARKAGKELEQLSKTLKIPLMSTYPAK 248
Query: 327 GSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHID 386
G L AN A+ ++D++L G + K AF + + ID
Sbjct: 249 GIVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYPFAEVSK--AFKNTRYFLQID 306
Query: 387 IDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSF 446
ID A++GK + ++V AD + L I + +++ + A + +
Sbjct: 307 IDPAKLGKRHKTDIAVLADAQKTLAAILAQVSERESTPWWQ--ANLANVKNWRAYLASLE 364
Query: 447 KTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGF 506
E + ++ ++++ +AI S VG + A + K + +TS MG
Sbjct: 365 DKQEGPLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMGV 424
Query: 507 GLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWE 566
G+P AI A + P+ + ++ GDG M +Q+LAT LP+ ++ N G + +
Sbjct: 425 GIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTNCQYGFIKDEQ 484
Query: 567 DRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQ--TMLDTPG 624
+ + + D + K A+ + +V + L + +
Sbjct: 485 EDTNQNDFIGVEFND--------IDFSKIADGVHMQAFRVNKIEQLPDVFEQAKAIAQHE 536
Query: 625 PYLLDVIFPHQEHVLP----MIPSGGAFKDV 651
P L+D + + + + + D+
Sbjct: 537 PVLIDAVITGDRPLPAEKLRLDSAMSSAADI 567
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami
diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia
coli} PDB: 2q27_A* 2q29_A*
Length = 564
Score = 769 bits (1988), Expect = 0.0
Identities = 128/579 (22%), Positives = 240/579 (41%), Gaps = 47/579 (8%)
Query: 90 GADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS 149
G I+VEAL++ + ++ G ++ + ++ IR + RHEQ +AA +
Sbjct: 10 GMHIIVEALKQNNIDTIYGVVGIPVTDMARHA-QAEGIRYIGFRHEQSAGYAAAASGFLT 68
Query: 150 GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGT--DAFQETPIVEVTR 207
KPGIC+ S PG N ++ LA+A ++ P++ I+G R ++ ++E + +
Sbjct: 69 QKPGICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAK 128
Query: 208 SITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQL--AVPNWNQPIKLP 265
K + V D+ + A ++ SGRPG V +D+P ++ +K+
Sbjct: 129 PYAKAAFRVNQPQDLGIALARAIRVSVSGRPGGVYLDLPANVLAATMEKDEALTTIVKVE 188
Query: 266 GYMSRLPKEPSEVHLEQI---VRLISESKKPVLYVGGGCLNS--SEELRKFVELTGIPVA 320
+ + + L++++++P++ +G G S E+LR+F+E IP
Sbjct: 189 NP-----SPALLPCPKSVTSAISLLAKAERPLIILGKGAAYSQADEQLREFIESAQIPFL 243
Query: 321 STLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRA 380
M G T + ++A+ +D+++ G R + + + +A+
Sbjct: 244 PMSMAKGILEDTHP-------LSAAAARSFALANADVVMLVGARLNWLLAHGKKGWAADT 296
Query: 381 KIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKV 440
+ + +DI+ EI N+ V V D+ +++G+ L WR+ L+ K
Sbjct: 297 QFIQLDIEPQEIDSNRPIAVPVVGDIASSMQGMLAELKQNTFT---TPLVWRDILNIHKQ 353
Query: 441 KYPLSFK-TFEESIPPQYAIQVLDEL----TNGEAIISTGVGQHQMWAAQ-FYKYRRPRQ 494
+ P L + + I G + + A+ +PR+
Sbjct: 354 QNAQKMHEKLSTDTQPLNYFNALSAVRDVLRENQDIYLVNEGANTLDNARNIIDMYKPRR 413
Query: 495 WLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLL 554
L G G MG G+ AIGA+V + +V I+GD +F + E+ TI LP+ I++
Sbjct: 414 RLDCGTWGVMGIGMGYAIGASVT-SGSPVVAIEGDSAFGFSGMEIETICRYNLPVTIVIF 472
Query: 555 NNQHLGMV-MQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLR 613
NN G+ D + T L K +A G VT +LR
Sbjct: 473 NNG--GIYRGDGVDLSGAGAPSPTDLLHH-------ARYDKLMDAFRGVGYNVTTTDELR 523
Query: 614 AAIQTMLDTPGPYLLDVI-----FPHQEHVLPMIPSGGA 647
A+ T + + P +++V+ H+ + P A
Sbjct: 524 HALTTGIQSRKPTIINVVIDPAAGTESGHITKLNPKQVA 562
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A
{Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
PDB: 2dji_A* 1v5f_A* 1v5g_A*
Length = 590
Score = 757 bits (1956), Expect = 0.0
Identities = 128/565 (22%), Positives = 229/565 (40%), Gaps = 25/565 (4%)
Query: 85 DQPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRS-NNIRNVLPRHEQGGIFAAE 143
D +++ LE G ++ P G + A+ NN++ + +HE+ G AA
Sbjct: 1 DNKINIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAV 60
Query: 144 GYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIV 203
++ G G+ + + GPGA++L++GL DA +D++P+VAI G P+R + DAFQE
Sbjct: 61 MQSKFGGNLGVTVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQN 120
Query: 204 EVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLA--VPNWNQP 261
+ I +N V + +P++V EA +A + R G +++VP D + ++
Sbjct: 121 PMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKR-GVAVLEVPGDFAKVEIDNDQWYSSA 179
Query: 262 IKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVAS 321
L Y P P+ ++ V L++ SK+PV+Y G G + +++ PV +
Sbjct: 180 NSLRKYA---PIAPAAQDIDAAVELLNNSKRPVIYAGIGTMGHGPAVQELARKIKAPVIT 236
Query: 322 TLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFD-DRVTGKLEAFASRA 380
T +F E G AN + ++D +L G F V G F +
Sbjct: 237 TGKNFETFEWDFEALTGSTYRVGWKPANETILEADTVLFAGSNFPFSEVEGT---FRNVD 293
Query: 381 KIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKV 440
+ IDID A +GK V++ D LA+ I + + + A + + +
Sbjct: 294 NFIQIDIDPAMLGKRHHADVAILGDAALAIDEILNKVDAVEESAWWT--ANLKNIANWRE 351
Query: 441 KYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGG 500
+ E + ++ + +AI S VG + + W TS
Sbjct: 352 YINMLETKEEGDLQFYQVYNAINNHADEDAIYSIDVGNSTQTSIRHLHMTPKNMWRTSPL 411
Query: 501 LGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLG 560
MG +P +GA PD + +I GDG+F M ++ T +P+ ++ +N
Sbjct: 412 FATMGIAIPGGLGAKNTYPDRQVWNIIGDGAFSMTYPDVVTNVRYNMPVINVVFSNTEYA 471
Query: 561 MVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTML 620
+ + K + + K AEA G G V+R D+ + +
Sbjct: 472 FIKNKYEDTNKNLFGVDFTD---------VDYAKIAEAQGAKGFTVSRIEDMDRVMAEAV 522
Query: 621 ---DTPGPYLLDVIFPHQEHVLPMI 642
++D +
Sbjct: 523 AANKAGHTVVIDCKITQDRPIPVET 547
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase,
membrane-associated flavoprotein dehydrogenase,
interactions with lipids cell membrane; HET: TDP FAD;
2.50A {Escherichia coli} PDB: 3ey9_A*
Length = 549
Score = 746 bits (1928), Expect = 0.0
Identities = 148/554 (26%), Positives = 249/554 (44%), Gaps = 20/554 (3%)
Query: 88 RKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYAR 147
+ A + + LE GV ++ G + + +L R I + RHE+ FAA A+
Sbjct: 3 QTVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQ 62
Query: 148 SSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTR 207
SG+ +C + GPG +L++GL D + VP++AI +P IG+ FQET E+ R
Sbjct: 63 LSGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFR 122
Query: 208 SITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGY 267
+ + LV + IP+++ A A R G ++ +P D+ + A P
Sbjct: 123 ECSHYCELVSSPEQIPQVLAIAMRKAVLNR-GVSVVVLPGDVALKPA-PEGATMHWYHAP 180
Query: 268 MSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLG 327
+ P E L ++ +L+ S L G GC + +EL +F P+ L G
Sbjct: 181 QPVV--TPEEEELRKLAQLLRYSSNIALMCGSGCAGAHKELVEFAGKIKAPIVHALRGKE 238
Query: 328 SFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDI 387
+ + M G+ G + + +D L+ G +F R + + AKI+ IDI
Sbjct: 239 HVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQFPYRAF-----YPTDAKIIQIDI 293
Query: 388 DSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFK 447
+ A IG + + +++ D+K L+ + ++ K D E+ + + K
Sbjct: 294 NPASIGAHSKVDMALVGDIKSTLRALLPLVEEKADRKFLD--KALEDYRDARKGLDDLAK 351
Query: 448 TFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFG 507
E++I PQY Q + +AI + VG +WAA++ K R+ L S G+M
Sbjct: 352 PSEKAIHPQYLAQQISHFAADDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMANA 411
Query: 508 LPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWED 567
+P A+GA P+ +V + GDG F M + + ++ KLP+KI++ NN LG V
Sbjct: 412 MPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMKLPVKIVVFNNSVLGFVAMEM- 470
Query: 568 RFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYL 627
N + AEACGI G +V + +++ A+Q GP L
Sbjct: 471 -KAGGYLTDGTELHD-------TNFARIAEACGITGIRVEKASEVDEALQRAFSIDGPVL 522
Query: 628 LDVIFPHQEHVLPM 641
+DV+ +E +P
Sbjct: 523 VDVVVAKEELAIPP 536
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon,
mandelate catabolism, T thiazolone diphosphate,
inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas
putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A*
1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A*
2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Length = 528
Score = 737 bits (1905), Expect = 0.0
Identities = 106/551 (19%), Positives = 193/551 (35%), Gaps = 37/551 (6%)
Query: 88 RKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYAR 147
E L RQG+ VF PG ++ + R +L E + A+GYA+
Sbjct: 2 ASVHGTTYELLRRQGIDTVFGNPGSNALPFLKDFPED--FRYILALQEACVVGIADGYAQ 59
Query: 148 SSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAF-QETPIVEVT 206
+S KP S G N + L++A PL+ GQ R MIG +A +
Sbjct: 60 ASRKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLP 119
Query: 207 RSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPG 266
R + K +Y ++P + A +A+ GPV + VP D + A P +
Sbjct: 120 RPLVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQS-HHLFDRH 178
Query: 267 YMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNS--SEELRKFVELTGIPVA-STL 323
++ L+ +V+ ++ + P + +G + + + E PV +
Sbjct: 179 V--SSSVRLNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPS 236
Query: 324 MGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFG---VRFDDRVTGKLEAFASRA 380
FP ++ G + ++ D++L G R+ G+
Sbjct: 237 APRCPFPTRHPCFRGLMPA-GIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQY--LKPGT 293
Query: 381 KIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKV 440
+++ + D E + V AD+ + ++
Sbjct: 294 RLISVTCDPLEAARAPMGDAIV-ADIGAMASALANLV------------EESSRQLPTAA 340
Query: 441 KYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGG 500
P + P+ L+++ AI Q R P +
Sbjct: 341 PEPAKVDQDAGRLHPETVFDTLNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAA 400
Query: 501 LGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLG 560
G +GF LPAAIG +A P+ ++ + GDGS ++ L T +P +++NN G
Sbjct: 401 -GGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTYG 459
Query: 561 MVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTML 620
+ + N + + A+ G+ + L+ ++Q L
Sbjct: 460 ALRWFAGVLEAENVPGLDVPG--------IDFRALAKGYGVQALKADNLEQLKGSLQEAL 511
Query: 621 DTPGPYLLDVI 631
GP L++V
Sbjct: 512 SAKGPVLIEVS 522
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric
dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A
{Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A*
2q5q_A*
Length = 565
Score = 697 bits (1801), Expect = 0.0
Identities = 112/590 (18%), Positives = 208/590 (35%), Gaps = 53/590 (8%)
Query: 74 PETNFSSRFAPDQPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPR 133
+ S K A+ L+ AL+ +G +F PG ++ + + +
Sbjct: 7 HHHHSSGLVPRGSHMKLAEALLRALKDRGAQAMFGIPGDFALPFFKVAEETQILPLHTLS 66
Query: 134 HEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRM-- 191
HE FAA+ AR S G+ T G GA N+V+ +A A + P+V I+G
Sbjct: 67 HEPAVGFAADAAARYSSTLGVAAVTYGAGAFNMVNAVAGAYAEKSPVVVISGAPGTTEGN 126
Query: 192 IGTDAFQETPIV----EVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPK 247
G + + +V + IT + D P + A + PV +++P+
Sbjct: 127 AGLLLHHQGRTLDTQFQVFKEITVAQARLDDPAKAPAEIARVLGAAR-AQSRPVYLEIPR 185
Query: 248 DIQQQLAVPNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNS--S 305
++ P P + + ++++ + + PVL V
Sbjct: 186 NMVNAEVEP----VGDDPAWPVDRDALAACA--DEVLAAMRSATSPVLMVCVEVRRYGLE 239
Query: 306 EELRKFVELTGIPVASTLMGLGSFPGTDELSLQM-LGMHGTVYANYAVDKSDLLLAFGVR 364
++ + + G+PV +T MG G L +G+ G V++SD L G
Sbjct: 240 AKVAELAQRLGVPVVTTFMGRGLLADAPTPPLGTYIGVAGDAEITRLVEESDGLFLLGAI 299
Query: 365 FDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEG 424
D + K +H + +G + + + + L+ +
Sbjct: 300 LSDTNFAVSQRKIDLRKTIHAFDRAVTLGYHTYADIPLAGLVDALLERLPP--------- 350
Query: 425 RFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTN---GEAIISTGVGQHQM 481
+ R ++ YP + E I P + +++ +I+ +G
Sbjct: 351 -----SDRTTRGKEPHAYPTGLQADGEPIAPMDIARAVNDRVRAGQEPLLIAADMGDCLF 405
Query: 482 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELAT 541
A + G MGFG+PA IGA + I+ + GDG+F M EL
Sbjct: 406 TAMDMI----DAGLMAPGYYAGMGFGVPAGIGAQCVSGGKRILTVVGDGAFQMTGWELGN 461
Query: 542 IKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIF-PNMLKFAEACG 600
+ + ++L NN M+ ++ S +++ A G
Sbjct: 462 CRRLGIDPIVILFNNASWEMLRTFQPE--------------SAFNDLDDWRFADMAAGMG 507
Query: 601 IPGAQVTRKADLRAAIQTMLDTPG-PYLLDVIFPHQEHVLPMIPSGGAFK 649
G +V +A+L+AA+ T G L++ + P + K
Sbjct: 508 GDGVRVRTRAELKAALDKAFATRGRFQLIEAMIPRGVLSDTLARFVQGQK 557
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv
flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A
{Acetobacter pasteurianus}
Length = 566
Score = 600 bits (1550), Expect = 0.0
Identities = 108/579 (18%), Positives = 199/579 (34%), Gaps = 50/579 (8%)
Query: 89 KGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARS 148
L E L + G+ FA G ++ + L + +++ + +E F+AEGYARS
Sbjct: 4 TVGMYLAERLVQIGLKHHFAVAGDYNLVLLDQLLLNKDMKQIYCCNELNCGFSAEGYARS 63
Query: 149 SGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQE--------T 200
+G + T GA + ++ L A +++P++ I+G GT +
Sbjct: 64 NGA-AAAVVTFSVGAISAMNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYS 122
Query: 201 PIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQ 260
+E+ R +T + D P + A R P +D+ +I + V
Sbjct: 123 YQLEMARQVTCAAESITDAHSAPAKIDHVIRTALRERK-PAYLDIACNIASEPCVRPGPV 181
Query: 261 PIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIP 318
L + ++ V L+ +S PV+ +G N+ +
Sbjct: 182 SSLLSEPEI--DHTSLKAAVDATVALLEKSASPVMLLGSKLRAANALAATETLADKLQCA 239
Query: 319 VASTLMGLGSFPGTDELSLQML-GMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFA 377
V G FP + G V+ SD LL F+D T A+
Sbjct: 240 VTIMAAAKGFFPEDHAGFRGLYWGEVSNPGVQELVETSDALLCIAPVFNDYSTVGWSAWP 299
Query: 378 SRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDE 437
++ + D + + L+ L+ + + A SA + +
Sbjct: 300 KGPNVILAEPDRVTVDGRAYDGFT----LRAFLQALAEKAPARPA------SAQKSSVPT 349
Query: 438 QKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLT 497
+ E + ++ ++ L + G A + R +
Sbjct: 350 CSLTATSD----EAGLTNDEIVRHINALLTSNTTLVAETGDSWFNAMRMTLPR-GARVEL 404
Query: 498 SGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQ 557
G +G+ +P+A G A+ + D V + GDGSF + QE+A + +LP+ I L+NN+
Sbjct: 405 EMQWGHIGWSVPSAFGNAMGSQDRQHVVMVGDGSFQLTAQEVAQMVRYELPVIIFLINNR 464
Query: 558 HLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIP-----GAQVTRKADL 612
+ + D Y N + E G + T +L
Sbjct: 465 GYVIEIAIHDGPY--NYIKN------------WDYAGLMEVFNAGEGHGLGLKATTPKEL 510
Query: 613 RAAIQTML-DTPGPYLLDVIFPHQEHVLPMIPSGGAFKD 650
AI +T GP L++ + ++ G
Sbjct: 511 TEAIARAKANTRGPTLIECQIDRTDCTDMLVQWGRKVAS 549
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate,
indole-3-acetic acid, TDP dependent enzyme, lyase; HET:
TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3
c.36.1.5 c.36.1.9
Length = 552
Score = 589 bits (1520), Expect = 0.0
Identities = 107/580 (18%), Positives = 214/580 (36%), Gaps = 56/580 (9%)
Query: 86 QPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGY 145
P AD L++ L G +F PG +++ + S +I V +E +AA+GY
Sbjct: 3 TPYCVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGY 62
Query: 146 ARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRR----------MIGTD 195
AR G + T G G + ++G+A + + VP++ I G +G
Sbjct: 63 ARCKGF-AALLTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDG 121
Query: 196 AFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAV 255
F+ ++ IT ++ + + I R + RPG +++ P D+ ++ A
Sbjct: 122 EFRH--FYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRERRPGYLML--PADVAKK-AA 176
Query: 256 PNWNQPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVE 313
+ + + + ++ SK+ L L L+K+V+
Sbjct: 177 TPPVNALTHKQAHA--DSACLKAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVK 234
Query: 314 LTGIPVASTLMGLGSFPGTDELSLQML-GMHGTVYANYAVDKSDLLLAFGVRFDDRVTGK 372
+ A+ LMG G F G T A++ +D +L G RF D +T
Sbjct: 235 EVPMAHATMLMGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTDTLTAG 294
Query: 373 LEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWR 432
+ A+ + + +A +G + + ++ ++ + A
Sbjct: 295 FTHQLTPAQTIEVQPHAARVGDVWFTGIPMNQAIETLVELCKQ-----------HVHAGL 343
Query: 433 EELDEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRP 492
+ +P + S+ + + L II G A +
Sbjct: 344 MSSSSGAIPFPQP----DGSLTQENFWRTLQTFIRPGDIILADQGTSAFGAID-LRLPAD 398
Query: 493 RQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKIL 552
++ G++G+ L AA GA A P+ ++ + GDG+ + +QEL ++ +K IL
Sbjct: 399 VNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVLTGDGAAQLTIQELGSMLRDKQHPIIL 458
Query: 553 LLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEI-FPNMLKFAEACGIP----GAQVT 607
+LNN+ + H R ++I N +A + +V+
Sbjct: 459 VLNNEGYTVERAI----------HGA---EQRYNDIALWNWTHIPQALSLDPQSECWRVS 505
Query: 608 RKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSGGA 647
L ++ + L++V+ P + + P++ +
Sbjct: 506 EAEQLADVLEKVAHHERLSLIEVMLP-KADIPPLLGALTK 544
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase,
flavoprotein, metal-binding, alcohol fermentation; HET:
TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A
3oe1_A* 1zpd_A*
Length = 568
Score = 589 bits (1521), Expect = 0.0
Identities = 111/573 (19%), Positives = 207/573 (36%), Gaps = 32/573 (5%)
Query: 90 GADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS 149
L E L + G+ FA G ++ + L + N+ V +E F+AEGYAR+
Sbjct: 5 VGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAK 64
Query: 150 GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPR-----RMIGTDAFQE---TP 201
G + T GA + + A +++P++ I+G + A +
Sbjct: 65 GA-AAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHY 123
Query: 202 IVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQP 261
+E+ ++IT + ++ P + A + PV +++ +I
Sbjct: 124 QLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKK-PVYLEIACNIASMPCAAPGPAS 182
Query: 262 IKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNS--SEELRKFVELTGIPV 319
S + +E+ ++ I+ K + VG + E KF + G V
Sbjct: 183 ALFNDEAS--DEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAV 240
Query: 320 ASTLMGLGSFPGTDELSLQM-LGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFAS 378
A+ FP + + G + ++D ++A F+D T
Sbjct: 241 ATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPD 300
Query: 379 RAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQ 438
K+V + S + + P V LK L + + + K + + L+
Sbjct: 301 PKKLVLAEPRSVVVNGIRFPSVH----LKDYLTRLAQKVSKKTGA-----LDFFKSLNAG 351
Query: 439 KVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTS 498
++K + + ++ L + G A Q K +
Sbjct: 352 ELKKAAPADP-SAPLVNAEIARQVEALLTPNTTVIAETGDSWFNA-QRMKLPNGARVEYE 409
Query: 499 GGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQH 558
G +G+ +PAA G AV P+ + + GDGSF + QE+A + KLP+ I L+NN
Sbjct: 410 MQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYG 469
Query: 559 LGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQT 618
+ + D Y + Y G E+F N ++ G + +L AI+
Sbjct: 470 YTIEVMIHDGPYNNIKNWDYAGLM----EVF-NGNGGYDSGAGKGLKAKTGGELAEAIKV 524
Query: 619 MLDTP-GPYLLDVIFPHQEHVLPMIPSGGAFKD 650
L GP L++ ++ ++ G
Sbjct: 525 ALANTDGPTLIECFIGREDCTEELVKWGKRVAA 557
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein,
THDP-dependent enzymes, thiamine pyrophosphate, lyase;
HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Length = 570
Score = 576 bits (1487), Expect = 0.0
Identities = 100/578 (17%), Positives = 210/578 (36%), Gaps = 54/578 (9%)
Query: 90 GADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS 149
D L++ L G+ ++F PG +++ + +++ + +E + A+GYAR+
Sbjct: 27 VGDYLLDRLHELGIEEIFGVPGDYNLQFLDQIISREDMKWIGNANELNASYMADGYART- 85
Query: 150 GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQE--------TP 201
K + T G G + ++GLA + +++P+V I G ++ F
Sbjct: 86 KKAAAFLTTFGVGELSAINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKH 145
Query: 202 IVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQP 261
+++ +T L+ + I R PV I++P D+ A
Sbjct: 146 FMKMHEPVTAARTLLTAENATYEIDRVLS--QLLKERKPVYINLPVDVAAAKAEKP--AL 201
Query: 262 IKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNS--SEELRKFVELTGIPV 319
+ E + +I + ++KPV+ G ++ + + +FV T +P+
Sbjct: 202 SLEKESSTTNTTEQVIL--SKIEESLKNAQKPVVIAGHEVISFGLEKTVTQFVSETKLPI 259
Query: 320 ASTLMGLGSFPGTDELSLQML-GMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFAS 378
+ G + + L + G + V+ +D +L GV+ D TG
Sbjct: 260 TTLNFGKSAVDESLPSFLGIYNGKLSEISLKNFVESADFILMLGVKLTDSSTGAFTHHLD 319
Query: 379 RAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQ 438
K++ ++ID I D + + ++ + + +D+Q
Sbjct: 320 ENKMISLNIDEGIIFNKVVEDF----DFRAVVSSLSELK---------GIEYEGQYIDKQ 366
Query: 439 KVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTS 498
++ S + Q ++ LT I G A+ + +++
Sbjct: 367 YEEFIPS----SAPLSQDRLWQAVESLTQSNETIVAEQGTSFFGASTIFLKS-NSRFIGQ 421
Query: 499 GGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQH 558
G++G+ PAA+G+ +A+ ++ + GDGS + VQEL EKL ++NN
Sbjct: 422 PLWGSIGYTFPAALGSQIADKESRHLLFIGDGSLQLTVQELGLSIREKLNPICFIINNDG 481
Query: 559 LGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPG-----AQVTRKADLR 613
+ + N N K E G V + +
Sbjct: 482 YTVEREIHGPTQSYNDIPM------------WNYSKLPETFGATEDRVVSKIVRTENEFV 529
Query: 614 AAIQTML-DTPGPYLLDVIFPHQEHVLPMIPSGGAFKD 650
+ ++ D Y ++++ ++ + G F +
Sbjct: 530 SVMKEAQADVNRMYWIELVLEKEDAPKLLKKMGKLFAE 567
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites,
phenylalanine catabolism, tryptophan catabolism,
thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces
cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A*
2vk4_A* 2vjy_A* 2g1i_A*
Length = 563
Score = 570 bits (1472), Expect = 0.0
Identities = 102/579 (17%), Positives = 193/579 (33%), Gaps = 48/579 (8%)
Query: 90 GADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARSS 149
L E L++ V VF PG ++ + + +R +E +AA+GYAR
Sbjct: 6 LGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIK 65
Query: 150 GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQE--------TP 201
G I T G G + ++G+A + + V ++ + G T
Sbjct: 66 GM-SCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTV 124
Query: 202 IVEVTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQP 261
++ +I++ ++ D+ P + + PV + +P ++ Q
Sbjct: 125 FHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQ-RPVYLGLPANLVDLNVPAKLLQT 183
Query: 262 IKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNS--SEELRKFVELTGIPV 319
+ EV ++ I+ L ++K PV+ C E +K ++LT P
Sbjct: 184 PIDMSLKPNDAESEKEV-IDTILVLDKDAKNPVILADACCSRHDVKAETKKLIDLTQFPA 242
Query: 320 ASTLMGLGSFPGTDELSLQM-LGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFAS 378
T MG GS + +G AV+ +DL+L+ G D TG
Sbjct: 243 FVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSYSYK 302
Query: 379 RAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQ 438
IV D +I P V + L+ L I D + + +
Sbjct: 303 TKNIVEFHSDHMKIRNATFPGVQMKFVLQKLLTTIA------------DAAKGYKPVAVP 350
Query: 439 KVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTS 498
+ + ++ L ++ G Q + ++
Sbjct: 351 ARTPANAAVPASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQ-TTFPNNTYGISQ 409
Query: 499 GGLGAMGFGLPAAIGAAVA----NPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLL 554
G++GF A +GAA A +P ++ GDGS + VQE++T+ L + +L
Sbjct: 410 VLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVL 469
Query: 555 NNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQ---VTRKAD 611
NN + + + + + + L G + V +
Sbjct: 470 NNDGYTI----QKLIHGPKAQYNEIQG--------WDHLSLLPTFGAKDYETHRVATTGE 517
Query: 612 LRAAIQT--MLDTPGPYLLDVIFPHQEHVLPMIPSGGAF 648
Q D +++V+ P + ++
Sbjct: 518 WDKLTQDKSFNDNSKIRMIEVMLPVFDAPQNLVEQAKLT 556
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate
synthase; menaquinone, THDP, Mg, vitamin K2,
carboxylase, magnesium; HET: AKG; 1.95A {Escherichia
coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Length = 556
Score = 398 bits (1024), Expect = e-132
Identities = 87/561 (15%), Positives = 174/561 (31%), Gaps = 35/561 (6%)
Query: 88 RKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYAR 147
R+ A +++EAL R GV + PG S + A ++ + E+G A G A+
Sbjct: 8 RRWAAVILEALTRHGVRHICIAPGSRSTLLTLAAAENSAFIHHTHFDERGLGHLALGLAK 67
Query: 148 SSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTR 207
S +P I TSG NL L +A L L+ +T P +I A Q +
Sbjct: 68 VSKQPVAVIVTSGTAVANLYPALIEAGLTGEKLILLTADRPPELIDCGANQAIRQPGMFA 127
Query: 208 SITKHNY-LVLDVDDIPR--IVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQP--- 261
S H+ L DIP +V + G V I+ P + +
Sbjct: 128 SHPTHSISLPRPTQDIPARWLVSTIDHALGTLHAGGVHINCPFAEPLYGEMDDTGLSWQQ 187
Query: 262 ---IKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIP 318
L + P +Q K+ V+ G +++ + + G P
Sbjct: 188 RLGDWWQDDKPWLREAPRLESEKQRDWFFWRQKRGVVVAGRMSAEEGKKVALWAQTLGWP 247
Query: 319 V-ASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFA 377
+ L G +L L A + ++ +++ G + + +A
Sbjct: 248 LIGDVLSQTGQPLPCADLWLGNA------KATSELQQAQIVVQLGSSLTGKRLLQWQASC 301
Query: 378 SRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDE 437
+ +D + + A++ L + W E+
Sbjct: 302 EPEEYWIVDDIEGRLDPAHHRGRRLIANIADWL----------ELHPAEKRQPWCVEIPR 351
Query: 438 QKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLT 497
+ + ++ + + + + G + +
Sbjct: 352 LAEQAMQAVIARRDAFGEAQLAHRICDYLPEQGQLFVGNSLVVRLIDALSQLPAGYPVYS 411
Query: 498 SGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQ 557
+ G + L A G A + I GD S + ++ LA ++ P+ ++++NN
Sbjct: 412 NRGASGIDGLLSTAAGVQRA-SGKPTLAIVGDLSALYDLNALALLRQVSAPLVLIVVNNN 470
Query: 558 HLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQ 617
+ + R + P + A + + +L A
Sbjct: 471 GGQIFSLLPTPQSERER---FYLMPQN-----VHFEHAAAMFELKYHRPQNWQELETAFA 522
Query: 618 TMLDTPGPYLLDVIFPHQEHV 638
TP +++++ +
Sbjct: 523 DAWRTPTTTVIEMVVNDTDGA 543
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate
synthase; menaquinone biosynthesis, sephchc synthase,
structural genomics; 2.60A {Listeria monocytogenes}
Length = 578
Score = 384 bits (987), Expect = e-126
Identities = 94/567 (16%), Positives = 193/567 (34%), Gaps = 29/567 (5%)
Query: 88 RKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYAR 147
+E L + GV + PG S + + ++ + E+ F A G A+
Sbjct: 11 TDYLAAFIEELVQAGVKEAIISPGSRSTPLALMMAEHPILKIYVDVDERSAGFFALGLAK 70
Query: 148 SSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTR 207
+S +P + + TSG A N +A+A L +PL+ +T P + A Q + +
Sbjct: 71 ASKRPVVLLCTSGTAAANYFPAVAEANLSQIPLIVLTADRPHELRNVGAPQAMDQLHLYG 130
Query: 208 SITKHNYLVLDVDDIP-------RIVREAFLLATSGRPGPVLIDVPKDIQQQLAV-PNWN 259
S K + ++ A +A GPV ++ P + P+
Sbjct: 131 SHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPLREPLVPILEPSPF 190
Query: 260 QPIKLPGYMSRLPKEPSEVHLEQIVRLISE--SKKPVLYVGGGCLNS-SEELRKFVELTG 316
+ + + I ++++E KK V VG + + + G
Sbjct: 191 TATGKKHHHVHIYYTHEVLDDSSIQKMVTECTGKKGVFVVGPIDKKELEQPMVDLAKKLG 250
Query: 317 IPV-ASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEA 375
P+ A L GL S+ DE+ + ++++ FG +
Sbjct: 251 WPILADPLSGLRSYGALDEVVIDQYDAFLKEAEIIDKLTPEVVIRFGSMPVSKPLKNWLE 310
Query: 376 FASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSAWREEL 435
S + +D +A K + D + L + + + + + + W
Sbjct: 311 QLSDIRFYVVDPGAAWKDPIKAVTDMIHCDERFLLDIMQQNMPDDAKDAAW-LNGWT-SY 368
Query: 436 DEQKVKYPLSFKTFEESIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFY-KYRRPRQ 494
++ + L+ + + L L +A + G ++ + + +
Sbjct: 369 NKVAREIVLAEMANTTILEEGKIVAELRRLLPDKAGLFIGNSMPIRDVDTYFSQIDKKIK 428
Query: 495 WLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLL 554
L + G + + +A+GA+V ++ GD SF ++ L K K+ + I+++
Sbjct: 429 MLANRGANGIDGVVSSALGASVVFQPMFLL--IGDLSFYHDMNGLLMAKKYKMNLTIVIV 486
Query: 555 NNQHLG---MVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKAD 611
NN G + Q + Y + G + + A + +
Sbjct: 487 NNDGGGIFSFLPQANEPKY----FESLFGTSTE-----LDFRFAAAFYDADYHEAKSVDE 537
Query: 612 LRAAIQTMLDTPGPYLLDVIFPHQEHV 638
L AI G +++V E+
Sbjct: 538 LEEAIDKASYHKGLDIIEVKTNRHENK 564
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate
synthase; transferase, metal-binding; HET: TPP; 2.35A
{Bacillus subtilis}
Length = 604
Score = 334 bits (857), Expect = e-106
Identities = 91/597 (15%), Positives = 193/597 (32%), Gaps = 37/597 (6%)
Query: 58 PSAASSTTIAQTVITSPETNFSSRFAPDQPRKGADILVEALERQGVTDVFAYPGGASMEI 117
++ Q + N + + ++ G+TD PG S +
Sbjct: 9 HHSSGENLYFQGHMLEMTVNPITHYI--------GSFIDEFALSGITDAVVCPGSRSTPL 60
Query: 118 HQALTRSNNIRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDS 177
+I + E+ F A G A++ +P + I TSG A N + +A
Sbjct: 61 AVLCAAHPDISVHVQIDERSAGFFALGLAKAKQRPVLLICTSGTAAANFYPAVVEAHYSR 120
Query: 178 VPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIP-------RIVREAF 230
VP++ +T P + A Q + + K ++ P + A
Sbjct: 121 VPIIVLTADRPHELREVGAPQAINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAA 180
Query: 231 LLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLP---KEPSEVHLEQIVRLI 287
A GPV ++VP + + G + + L + ++
Sbjct: 181 GEAQKRPMGPVHVNVPLREPLMPDLSDEPFGRMRTGRHVSVKTGTQSVDRESLSDVAEML 240
Query: 288 SESKKPVLYVGGGCLNS-SEELRKFVELTGIPV-ASTLMGLGSFPGTDELSLQMLGMHGT 345
+E++K ++ G ++ E + + P+ A L L + +
Sbjct: 241 AEAEKGMIVCGELHSDADKENIIALSKALQYPILADPLSNLRNGVHDKSTVIDAYDSFLK 300
Query: 346 VYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCAD 405
+ D+++ FG + + + ID D + + +
Sbjct: 301 DDELKRKLRPDVVIRFGPMPVSKPVFLWLKDDPTIQQIVIDEDGGWRDPTQASAHMIHCN 360
Query: 406 LKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSFKTFEESIPPQYAIQVLDEL 465
+ + I L + W+ + + L + E+ ++L L
Sbjct: 361 ASVFAEEIMAGLTAATRSSEW-LEKWQFV--NGRFREHLQTISSEDVSFEGNLYRILQHL 417
Query: 466 TNGEAIISTGVGQHQMWAAQFYKYR-RPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIV 524
+ + G F++ + RP + ++ G + + +A+G A +
Sbjct: 418 VPENSSLFVGNSMPIRDVDTFFEKQDRPFRIYSNRGANGIDGVVSSAMGVCEG-TKAPVT 476
Query: 525 DIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLG---MVMQWEDRFYKANRAHTYLGD 581
+ GD SF ++ L K +P+ ++L+NN G + Q ++ + G
Sbjct: 477 LVIGDLSFYHDLNGLLAAKKLGIPLTVILVNNDGGGIFSFLPQASEKTH----FEDLFGT 532
Query: 582 PSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHV 638
P+ + A G + + + A D PG +L+++ Q V
Sbjct: 533 PTG-----LDFKHAAALYGGTYSCPASWDEFKTAYAPQADKPGLHLIEIKTDRQSRV 584
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia,
iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A
{Methanosarcina barkeri}
Length = 170
Score = 54.4 bits (130), Expect = 8e-09
Identities = 26/139 (18%), Positives = 54/139 (38%), Gaps = 19/139 (13%)
Query: 260 QPIKLPGYMSRLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSS--EELRKFVELTGI 317
+ G V E ++IS++K+P+L VG L+ + + K + I
Sbjct: 9 KLFTSYG-----VNTSKAVSPEMAAKIISKAKRPLLMVGTLALDPELLDRVVKISKAANI 63
Query: 318 PVASTLMGLGSFPGTDELSLQMLGMHGTV-----YANYAVD---KSDLLLAFGVRFD--D 367
P+A+T L D + + + H +D D+++ G + +
Sbjct: 64 PIAATGSSLAVLADKD-VDAKYINAHMLGFYLTDPKWPGLDGNGNYDMIITIGFKKFYIN 122
Query: 368 RVTGKLEAFASRAKIVHID 386
+V + F++ K + I+
Sbjct: 123 QVLSAAKNFSN-LKTIAIE 140
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 3e-07
Identities = 94/580 (16%), Positives = 164/580 (28%), Gaps = 230/580 (39%)
Query: 2 AAASTHTATFTNPPPSSFISTTSKKSA-LFSISKFTLPLSHNF---GKPN-----LRIIT 52
A F S+ + +A L +I F G + LR +
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVAI----------FGGQGNTDDYFEELRDLY 177
Query: 53 SSLPKPSAASSTTIAQTVITSPETNFSSRFAPDQPRKGADILVEALERQGVTDVFAYPGG 112
+ + +I + + L R + + G
Sbjct: 178 Q--------TYHVLVGDLIKF-----------------SAETLSELIRTTLDAEKVFTQG 212
Query: 113 ASMEIHQALTRSNNIRNV---------LPRHEQGGIFAAEGY---ARSSGK-PG----IC 155
+ I + L +N + P G+ Y A+ G PG
Sbjct: 213 --LNILEWLENPSNTPDKDYLLSIPISCPLI---GVIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 156 IATSGPGATNLVSGLADALLDSVP-LVAITGQVPRRM--IGTDAFQETPIVEVTRSITKH 212
+G LV+ +A A DS + + IG ++ P +
Sbjct: 268 KGATGHSQ-GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP------ 320
Query: 213 NYLVLDVDDIPRIVREAFLLATSGRPGPVL--IDVPKD-IQQQLAVPNWNQPIKLPGYMS 269
P I+ ++ L G P P+L ++ ++ +Q + N S
Sbjct: 321 ----------PSILEDS-LENNEGVPSPMLSISNLTQEQVQDYVNKTN-----------S 358
Query: 270 RLPKEPSEVHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLGSF 329
LP +Q+ IS L N + + V ++G P +L GL
Sbjct: 359 HLPAG------KQVE--IS------LV------NGA---KNLV-VSGPP--QSLYGL--- 389
Query: 330 PGTDELSLQMLGMHGTVYANYAVDKSDLL-----LAFGVRFDDRVTGKLEAFASRAKIVH 384
L+L+ A +D+S + L F RF L +
Sbjct: 390 ----NLTLR------KAKAPSGLDQSRIPFSERKLKFSNRF-------LPVAS------- 425
Query: 385 IDIDSAEIGKNKQP-HVSVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYP 443
P H L A IN+ L + F+A +++ + P
Sbjct: 426 -------------PFH---SHLLVPASDLINKDLVKNN----VSFNA--KDI-----QIP 458
Query: 444 LSFKTF--------EESIPPQYAIQVL------DELTNGEA--IISTGVGQHQMWAAQFY 487
+ + TF SI + ++ + T +A I+ G G
Sbjct: 459 V-YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPG---------- 507
Query: 488 KYRRPRQWLTSGGLGAM------GFGLPAAIGAAV-ANPD 520
+ GLG + G G+ + + NPD
Sbjct: 508 ---------GASGLGVLTHRNKDGTGVRVIVAGTLDINPD 538
Score = 41.2 bits (96), Expect = 0.001
Identities = 37/236 (15%), Positives = 70/236 (29%), Gaps = 84/236 (35%)
Query: 30 FSISKFTL--P--LSHNFGKPNLRIIT---SSLPKPSAASSTTIAQTVITSPETNFSSR- 81
FSI + P L+ +FG + I S++ + + + E N S
Sbjct: 1659 FSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIF--KEINEHSTS 1716
Query: 82 --FAPD----------QPRKGADILV------EALERQGVTD---VFA------Y----- 109
F + QP A + + E L+ +G+ FA Y
Sbjct: 1717 YTFRSEKGLLSATQFTQP---A-LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALAS 1772
Query: 110 PGGASMEIHQAL----TRSNNIRNVLPRHEQG----GIFA------------------AE 143
M I + R ++ +PR E G G+ A E
Sbjct: 1773 LADV-MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE 1831
Query: 144 GYARSSGK---------PGICIATSG-PGATNLVSGLADAL-LDSVPLVAITGQVP 188
+ +G +G A + V+ + + + L + ++ + +
Sbjct: 1832 RVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLS 1887
Score = 37.3 bits (86), Expect = 0.018
Identities = 23/127 (18%), Positives = 39/127 (30%), Gaps = 30/127 (23%)
Query: 557 QHLGMVMQWEDRFYKA----NRAHTYLGDPSRES--EIF---PNMLKFAEACGIPGAQVT 607
Q GM M A NRA + D S +I P L G +
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHF--GGEKGKRI 1684
Query: 608 RK----------ADLRAAIQTMLDTPGPYLLDVIFPHQEHVL-------P--MIPSGGAF 648
R+ D + + + + F ++ +L P + AF
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAF 1744
Query: 649 KDVITEG 655
+D+ ++G
Sbjct: 1745 EDLKSKG 1751
Score = 35.8 bits (82), Expect = 0.063
Identities = 42/292 (14%), Positives = 69/292 (23%), Gaps = 106/292 (36%)
Query: 338 QMLGMHGTVYANYAV-----DKSD--LLLAFGVRFDDRVTGKLEAFASRAKIVHID-IDS 389
Q GM +Y +++D +G D V +H
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVIN-----NPVNLTIHFGGEKG 1681
Query: 390 AEIGKNKQPHV-SVCADLKLALKGINRILGGKDAEGRFDFSAWREELDE----QKVKYPL 444
I +N + D KL + I + + + F + + L Q P
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS--YTFRSEKGLLSATQFTQ----PA 1735
Query: 445 SFKTFEESIPPQYAI-QVLDELTN------------GE--AIIST-GV------------ 476
E A + L GE A+ S V
Sbjct: 1736 LT-LME------KAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFY 1788
Query: 477 -GQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAA-------------------- 515
G A PR L G + P + A+
Sbjct: 1789 RGMTMQVAV-------PRDELGRSNYGMIAIN-PGRVAASFSQEALQYVVERVGKRTGWL 1840
Query: 516 --VAN---PDAIIVDIDGDGSFIMNVQELAT---------IKVEKLPIKILL 553
+ N + V GD + + + I + +L + L
Sbjct: 1841 VEIVNYNVENQQYV-AAGD---LRALDTVTNVLNFIKLQKIDIIELQKSLSL 1888
Score = 34.6 bits (79), Expect = 0.12
Identities = 34/228 (14%), Positives = 64/228 (28%), Gaps = 63/228 (27%)
Query: 465 LTNGEA----IISTGVGQH--QMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVAN 518
L++G ++ T Q+ QF K LP A
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQE-QFNKI------------------LPEPT-EGFAA 50
Query: 519 PDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHT- 577
D + G F+ V L ++L L E+ + + N H
Sbjct: 51 DDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF------ENCYLEGNDIHAL 104
Query: 578 ---YLGDPSRESEIFPNMLK-FAEACGIPGAQVTRKAD---LRAA--------------- 615
L + ++K + A + +K++ RA
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164
Query: 616 --------IQTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFKDVITEG 655
++ + T + D+I E + +I + + V T+G
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG 212
Score = 30.4 bits (68), Expect = 2.2
Identities = 20/125 (16%), Positives = 45/125 (36%), Gaps = 40/125 (32%)
Query: 216 VLDVDDIPRIVREAFLLATSGRPGPVLID-VPKDIQQQ-----LAVPNWNQPIKLPGYMS 269
V+ ++ + +V R G + VP+D + +A+ PG ++
Sbjct: 1776 VMSIESLVEVVFY--------R-GMTMQVAVPRDELGRSNYGMIAI--------NPGRVA 1818
Query: 270 RLPKEPSEVHLEQIVRLISESKKPVL-----------YVGGG---CLNSSEELRKFVELT 315
S+ L+ +V + + ++ YV G L++ + F++L
Sbjct: 1819 ---ASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQ 1875
Query: 316 GIPVA 320
I +
Sbjct: 1876 KIDII 1880
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural
genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Length = 174
Score = 49.0 bits (116), Expect = 6e-07
Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 17/139 (12%)
Query: 260 QPIKLPGYMSRLPKEPSEVHLEQIV-RLISESKKPVLYVGGGCLNSSEELRKFVELTGIP 318
+PG PK + + + V +I ++K+P+L VG + E K I
Sbjct: 9 DVANIPG-----PKMATLLEKGKPVANMIKKAKRPLLIVGPDMTDEMFERVKKFVEKDIT 63
Query: 319 VAST------LMGLGSFPGTDELSLQMLGMHGTVYANYAVD---KSDLLLAFGVRFD--D 367
V +T + G + L L D DL+L G +
Sbjct: 64 VVATGSAITRFIDAGLGEKVNYAVLHELTQFLLDPDWKGFDGQGNYDLVLMLGSIYYHGS 123
Query: 368 RVTGKLEAFASRAKIVHID 386
++ ++ FA + + ID
Sbjct: 124 QMLAAIKNFAPHIRALAID 142
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 2e-05
Identities = 70/498 (14%), Positives = 138/498 (27%), Gaps = 183/498 (36%)
Query: 195 DAFQE----TPIVEVTRSITKHNYLVLDVDDI----PRIVREAFLLATSGRPGPVLIDVP 246
DAF + + ++ +SI ++D I + L T L+
Sbjct: 27 DAFVDNFDCKDVQDMPKSILSKE----EIDHIIMSKDAVSGTLRLFWT-------LLSKQ 75
Query: 247 KDIQQQLAV----PNWN---QPIKLPGYMSRLPKEPSEVHLEQIVRLISE----SKKPVL 295
+++ Q+ N+ PIK R P + +++EQ RL ++ +K V
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIK---TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV- 131
Query: 296 YVGGGCLNSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHG---TVYANYAV 352
L+ +++L L+ L + + G+ G T A
Sbjct: 132 ----------SRLQPYLKLR-----QALLELRPAKN---VLID--GVLGSGKTWVALDVC 171
Query: 353 DKSDLL--LAFGVRF---------DDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVS 401
+ + F + F + V L+ + ID + +
Sbjct: 172 LSYKVQCKMDFKI-FWLNLKNCNSPETVLEMLQKL-----LYQIDPNWTSRSDHSSNIKL 225
Query: 402 VCADLKLALKGINRILGGKDAEGRFDFSAWREE----LDEQKVKYPLSFKTFEESIPPQY 457
++ L+ R+L K E L V+ ++ F
Sbjct: 226 RIHSIQAELR---RLLKSKP----------YENCLLVLLN--VQNAKAWNAFN------L 264
Query: 458 AIQVLDELTNGEAIISTGVGQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIG--AA 515
+ ++L LT ++ + A + S +M
Sbjct: 265 SCKIL--LTTRFKQVTDFLS------AATTTHI-------SLDHHSMTLTPDEVKSLLLK 309
Query: 516 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMV--------MQWED 567
+ + + LP ++L N + L ++ W+
Sbjct: 310 YLD-----------------------CRPQDLPREVLTTNPRRLSIIAESIRDGLATWD- 345
Query: 568 RFYKANRAHTYLGDP-SRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPY 626
+K D + E N+L+ AE RK +
Sbjct: 346 -NWK-----HVNCDKLTTIIESSLNVLEPAE---------YRKM---------------F 375
Query: 627 LLDVIFPHQEHVLPMIPS 644
+FP IP+
Sbjct: 376 DRLSVFP--PSAH--IPT 389
Score = 46.4 bits (109), Expect = 3e-05
Identities = 80/625 (12%), Positives = 171/625 (27%), Gaps = 239/625 (38%)
Query: 202 IVEVTRSITKHNYLVLDVDDIPRIV---REA-FLLATSGRPGPV---------LIDVPKD 248
I+ V N+ DV D+P+ + E ++ V L+ ++
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII---MSKDAVSGTLRLFWTLLSKQEE 77
Query: 249 IQQQLAV----PNWN---QPIKLPGYMSRLPKEPSEVHLEQIVRLISE----SKKPVLYV 297
+ Q+ N+ PIK R P + +++EQ RL ++ +K V
Sbjct: 78 MVQKFVEEVLRINYKFLMSPIK---TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV--- 131
Query: 298 GGGCLNSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHG---TVYANYAVDK 354
L+ +++L L+ L + + G+ G T A
Sbjct: 132 --------SRLQPYLKLR-----QALLELRPAKN---VLID--GVLGSGKTWVALDVCLS 173
Query: 355 SDLL--LAFGVRF---------DDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVC 403
+ + F + F + V L+ + ID + +
Sbjct: 174 YKVQCKMDFKI-FWLNLKNCNSPETVLEMLQKL-----LYQIDPNWTSRSDHSSNIKLRI 227
Query: 404 ADLKLALKGINRILGGK-------------DAE--GRFDFSAWR-----------EELDE 437
++ L+ R+L K +A+ F+ S + + L
Sbjct: 228 HSIQAELR---RLLKSKPYENCLLVLLNVQNAKAWNAFNLSC-KILLTTRFKQVTDFLSA 283
Query: 438 QKVKYPLS---FKTFEES----------------IPPQYAIQVLDELTNGEAIISTGVGQ 478
+ T +P + + +II+ +
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE-VLTTNPRRL---SIIAESIRD 339
Query: 479 H-QMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVAN--PD---------AII--- 523
W +K+ + L I +++ P ++
Sbjct: 340 GLATW--DNWKHVNCDK-------------LTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 524 VDI----------DGDGSFIMNVQELATIKVEKLPIKILL----------LNNQHLGMVM 563
I D S +M V V KL L+ + + +L + +
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVV-------VNKLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 564 QWEDRF---------YKANRA---------------HTYLG------DPSRESEIFPNM- 592
+ E+ + Y + ++++G + +F +
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497
Query: 593 --LKFAE--------ACGIPGAQVTRKADLRAAIQTMLDTPGPY------LLDVIFPHQE 636
+F E A G+ + L+ + D Y +LD + +E
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557
Query: 637 HVLP-----------MIPSGGAFKD 650
+++ M F++
Sbjct: 558 NLICSKYTDLLRIALMAEDEAIFEE 582
Score = 43.3 bits (101), Expect = 3e-04
Identities = 74/534 (13%), Positives = 142/534 (26%), Gaps = 173/534 (32%)
Query: 5 STHTATFTNPPPSS--FISTTSK----KSALFSISKFTLPLSHN---FGKPNLRIITSSL 55
+ + + +S + AL + L GK + +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK-------TWV 166
Query: 56 PKPSAASSTTIAQTVITSPET-----NFSSRFAPDQPRKGADIL--VEALERQGVTDVFA 108
A ++ V + N + +P+ +L ++ L Q + +
Sbjct: 167 -----ALDVCLSYKVQCKMDFKIFWLNLKNCNSPE------TVLEMLQKLLYQIDPNWTS 215
Query: 109 YPGGASMEIHQALTRSNNIRNVLPRHEQGGIFAAEGYARS--------SGKPGICIATSG 160
+S R ++I+ L R + ++ Y + K
Sbjct: 216 RSDHSSNIKL----RIHSIQAELRR-----LLKSKPYENCLLVLLNVQNAK---AWNAFN 263
Query: 161 PGATNLV----SGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKH---- 212
L+ + D L + + ++T
Sbjct: 264 LSCKILLTTRFKQVTDFL------------------SAATTTHISLDHHSMTLTPDEVKS 305
Query: 213 ---NYLVLDVDDIPRIVREAF--------LLATSGRPGPVLID----------------- 244
YL D+P RE ++A S R G D
Sbjct: 306 LLLKYLDCRPQDLP---REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 245 ----VPKDIQQ---QLAV--PNWNQPIKLPGYMSRLPKEPSEVHLEQIV------RLISE 289
P + ++ +L+V P+ + P L +S + + + + +V L+ +
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTIL---LSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 290 SKKPVLY--------VGGGCLNSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLG 341
K + N R V+ IP L P D+ +G
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL-IPPYLDQYFYSHIG 478
Query: 342 MHGTVYANYAVDKSDLLLAFGVRF-DDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHV 400
H ++ + + F + F D R F KI H G +
Sbjct: 479 HH-----LKNIEHPERMTLFRMVFLDFR-------FL-EQKIRHDSTAWNASG----SIL 521
Query: 401 SVCADLKLALKGINRILGGKDAEGRFDFSAWREELDEQKVKYPLSF-KTFEESI 453
+ LK I D + ++ E+ V L F EE++
Sbjct: 522 NTLQQLKFYKPYI------CDNDPKY----------ERLVNAILDFLPKIEENL 559
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho;
thiamine diphosphate-dependent enzyme, alpha-beta fold;
HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A*
3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Length = 845
Score = 37.0 bits (85), Expect = 0.021
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 502 GAMGFGLPAAIGAAVANPDAIIVDIDGDG 530
G +G+ L A GA + NP + I GDG
Sbjct: 175 GELGYALSHAYGAVMNNPSLFVPCIIGDG 203
>3ot2_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-biology; 1.96A {Anabaena variabilis}
Length = 187
Score = 31.7 bits (72), Expect = 0.45
Identities = 9/62 (14%), Positives = 16/62 (25%), Gaps = 3/62 (4%)
Query: 464 ELTNGEAIISTGV-GQHQMWAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAI 522
E G+ I G+H ++ + + L G PD
Sbjct: 26 EYIEGKIIQKPMPQGKHSAIQSECV--SVINSVVKPQRIARAFLELRCTFGDHSTVPDIS 83
Query: 523 IV 524
+
Sbjct: 84 VF 85
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 1.95A
{Pyrococcus horikoshii}
Length = 333
Score = 31.8 bits (73), Expect = 0.60
Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 17/76 (22%)
Query: 332 TDELS---LQMLGMHGTVYANYAVDKSDLLLAFG------VRFDDRVTGKLEAFASRAKI 382
++ L+ L + V +L G V ++T ++ A R K+
Sbjct: 8 LLKMKREALEELKKYADVEIILYPSGEELKGVIGRFDGIIVSPTTKITREVLENAERLKV 67
Query: 383 V--------HIDIDSA 390
+ +ID++ A
Sbjct: 68 ISCHSAGYDNIDLEEA 83
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 1.3
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 45 KPNLRIITSSLPK---PSAASSTTIAQTV 70
K L+ + +SL K +A + I T+
Sbjct: 19 KQALKKLQASL-KLYADDSAPALAIKATM 46
Score = 29.5 bits (65), Expect = 2.1
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 6/25 (24%)
Query: 166 LVSGL---ADALLDSVPLVAITGQV 187
L + L AD DS P +AI +
Sbjct: 25 LQASLKLYAD---DSAPALAIKATM 46
Score = 28.4 bits (62), Expect = 4.3
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 436 DEQKVKYPL--SFKTFEESIPPQYAIQVLDE 464
++Q +K L S K + + P AI+ E
Sbjct: 18 EKQALK-KLQASLKLYADDSAPALAIKATME 47
>2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC,
DERA, structur genomics, structural genomics consortium,
SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1
Length = 281
Score = 28.9 bits (65), Expect = 5.0
Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 281 EQIVRLISESKKPVLYVGGGCLNSS------EELRKFVELTGIPVAS 321
+ I L +ES K + C+ E++++ + +A
Sbjct: 48 DDIRELCNESVKTCPFAAAVCVYPKFVKFINEKIKQEINPFKPKIAC 94
>1ygh_A ADA4, protein (transcriptional activator GCN5); transcriptional
regulation, histone acetylation; 1.90A {Saccharomyces
cerevisiae} SCOP: d.108.1.1
Length = 164
Score = 28.3 bits (63), Expect = 5.5
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 13/72 (18%)
Query: 267 YMSRLPKEPSEVHLEQIVRLISESK-------KPVLYVGGGCLNSSEELRKFVELTGIPV 319
+ +LPK P E I RL+ + + L V GG + R+F E+ +
Sbjct: 26 FQKQLPKMPKEY----IARLVYDRSHLSMAVIRKPLTVVGGITYRPFDKREFAEIVFCAI 81
Query: 320 ASTL--MGLGSF 329
+ST G G+
Sbjct: 82 SSTEQVRGYGAH 93
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP,
nucleotide-binding; HET: NAP; 1.40A {Burkholderia
xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Length = 534
Score = 28.8 bits (65), Expect = 6.5
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 161 PGATNLVSGLADALLDSVP---LVAITG 185
PGA +++ G + LLD + +V+ TG
Sbjct: 209 PGALSIICGSSAGLLDQIRSFDVVSFTG 236
>1jz7_A Lactase, beta-galactosidase, LACZ; TIM barrel (alpha/beta barrel),
jelly-roll barrel, immunoglobulin, beta supersandwich,
hydrolase; HET: GAL; 1.50A {Escherichia coli} SCOP:
b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 PDB: 1hn1_A
1jyx_A* 1jz3_A* 1jz4_A* 1jz5_A* 1jz6_A* 1dp0_A* 3iap_A*
1jz8_A* 1jyn_A* 1jyv_A* 1jyw_A* 3iaq_A* 1px3_A 1px4_A*
3czj_A* 3i3e_A 3i3d_A* 3i3b_A 3dym_A ...
Length = 1023
Score = 28.6 bits (64), Expect = 7.3
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 3/26 (11%)
Query: 417 LGGKDAEGRFDFSAWR---EELDEQK 439
G G F F+ R ++L E
Sbjct: 946 YGPHQWRGDFQFNISRYSQQQLMETS 971
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.395
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,389,234
Number of extensions: 679830
Number of successful extensions: 1895
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1693
Number of HSP's successfully gapped: 55
Length of query: 661
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 561
Effective length of database: 3,909,693
Effective search space: 2193337773
Effective search space used: 2193337773
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)