BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048728
(536 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1O5Z|A Chain A, Crystal Structure Of Folylpolyglutamate Synthase (Tm0166)
From Thermotoga Maritima At 2.10 A Resolution
Length = 442
Score = 149 bits (376), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 153/300 (51%), Gaps = 20/300 (6%)
Query: 55 QLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLA 114
+ K IH+ GT GKGS +IL + G+R G + SPHL RER RL+ + ISE+ +
Sbjct: 51 EYKTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVK 110
Query: 115 YFWWCYDRLKEKATEDIPMPSYFRFLALLAFKIFTAEQIDVAILEVGLGGRFDATNVVQK 174
+ L E E+I PS+F + +AF F + +D+A+LEVGLGGR DATNVV
Sbjct: 111 IYETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGRLDATNVVF- 169
Query: 175 PVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKYGVPAFTVPQPEEAMRVLEENASKLDV 234
P+ I ++ DH + LG T+ +IA EK+GI K VP T + EA++V+E+ A K
Sbjct: 170 PLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLVTGERKREALKVMEDVARKKSS 229
Query: 235 PLQVVPPXXXXXXXXXXXXXXXEHQYMNAG------LAVALSSTWLQRTSQLGINYLDTT 288
+ V+ E+++ G L + ++ + + + L+ T
Sbjct: 230 RMYVI---DKDFSVKVKSLKLHENRFDYCGENTFEDLVLTMNGPHQIENAGVALKTLEAT 286
Query: 289 S-PLPEQFI-QGLTMANLQGRAQIVPDRYTNSETSGDLVFYLDGAHSPESMEICARWFSL 346
PL E+ I +GL A GR +I+ E +G + + LDGAH+P E R L
Sbjct: 287 GLPLSEKAIREGLKNAKNLGRFEIL-------EKNGKM-YILDGAHNPHGAESLVRSLKL 338
>pdb|3N2A|A Chain A, Crystal Structure Of Bifunctional Folylpolyglutamate
SynthaseDIHYDROFOLATE SYNTHASE FROM YERSINIA PESTIS CO92
pdb|3NRS|A Chain A, Crystal Structure Of Ligand-Free Bifunctional
Folylpolyglutamate SynthaseDIHYDROFOLATE SYNTHASE FROM
YERSINIA PESTIS C092
pdb|3PYZ|A Chain A, Crystal Structure Of Bifunctional Folylpolyglutamate
SynthaseDIHYDROFOLATE SYNTHASE COMPLEXED WITH AMPPNP AND
MN ION FROM Yersinia Pestis C092
pdb|3QCZ|A Chain A, Crystal Structure Of Bifunctional Folylpolyglutamate
SynthaseDIHYDROFOLATE SYNTHASE WITH MN, AMPPNP AND
L-Glutamate Bound
Length = 437
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 98/171 (57%), Gaps = 8/171 (4%)
Query: 49 LDVAISQLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDIS 108
LD+ K+ VAGT GKG+TC E+IL G R G+++SPHL+ ER R+ G ++S
Sbjct: 45 LDLLKPAPKIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLRYTERVRIQGQELS 104
Query: 109 EDKFLAYFWWCYDRLKEKATEDIPMPSYFRFLALLAFKIFTAEQIDVAILEVGLGGRFDA 168
E + F E DI + +YF F L A ++F ++DV ILEVGLGGR DA
Sbjct: 105 EAEHSHSFAQI-----EAGRGDISL-TYFEFGTLSALQLFKQAKLDVVILEVGLGGRLDA 158
Query: 169 TNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKYGVPAFTVPQPE 219
TN+V V I+S+ DH + LG I EKAG+F+ G PA V +P+
Sbjct: 159 TNIVDSD-VAAITSIALDHTDWLGYDRESIGREKAGVFRGGKPA-VVGEPD 207
>pdb|1W78|A Chain A, E.Coli Folc In Complex With Dhpp And Adp
pdb|1W7K|A Chain A, E.Coli Folc In Complex With Adp, Without Folate Substrate
Length = 422
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 92/162 (56%), Gaps = 8/162 (4%)
Query: 58 VIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFW 117
V VAGT GKG+TC ESIL G++ G+++SPHL+ ER R+ G ++ E A F
Sbjct: 51 VFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQGQELPESAHTASF- 109
Query: 118 WCYDRLKEKATEDIPMPSYFRFLALLAFKIFTAEQIDVAILEVGLGGRFDATNVVQKPVV 177
E A DI + +YF + L A +F Q+DV ILEVGLGGR DATN+V V
Sbjct: 110 ----AEIESARGDISL-TYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNIVDADVA 164
Query: 178 CGISSLGYDHMEILGNTLGEIAGEKAGIFKYGVPAFTVPQPE 219
++S+ DH + LG I E AGIF+ PA V +PE
Sbjct: 165 V-VTSIALDHTDWLGPDRESIGREXAGIFRSEKPAI-VGEPE 204
>pdb|1FGS|A Chain A, Folylpolyglutamate Synthetase From Lactobacillus Casei
Length = 428
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 102/186 (54%), Gaps = 10/186 (5%)
Query: 36 RFELLSDYLKILDLDVAIS----QLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSP 91
R D+ +IL L A+ Q + IHV GT GKGS +L G GL+TSP
Sbjct: 15 RLAKTGDHRRILTLLHALGNPQQQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSP 74
Query: 92 HLIDVRERFRLDGDDISEDKF---LAYFWWCYDRLKEKATEDIPMPSYFRFLALLAFKIF 148
++ ER +D + I + +A+ +RL+++ D + + F F+ LA+ F
Sbjct: 75 FIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQA-DFNV-TEFEFITALAYWYF 132
Query: 149 TAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKY 208
Q+DVA++EVG+GG D+TNV+ PVV ++ + DH ++LG+T+ IA KAGI K
Sbjct: 133 RQRQVDVAVIEVGIGGDTDSTNVI-TPVVSVLTEVALDHQKLLGHTITAIAKHKAGIIKR 191
Query: 209 GVPAFT 214
G+P T
Sbjct: 192 GIPVVT 197
>pdb|2GCA|A Chain A, Apo Form Of L. Casei Fpgs
Length = 428
Score = 112 bits (279), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 101/186 (54%), Gaps = 10/186 (5%)
Query: 36 RFELLSDYLKILDLDVAIS----QLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSP 91
R D+ +IL L A+ Q + IHV GT GKGS +L G GL+TSP
Sbjct: 15 RLAKTGDHRRILTLLHALGNPQQQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSP 74
Query: 92 HLIDVRERFRLDGDDISEDKF---LAYFWWCYDRLKEKATEDIPMPSYFRFLALLAFKIF 148
++ ER +D + I + +A+ +RL+++ D + + F F+ L + F
Sbjct: 75 FIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQA-DFNV-TEFEFITALGYWYF 132
Query: 149 TAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKY 208
Q+DVA++EVG+GG D+TNV+ PVV ++ + DH ++LG+T+ IA KAGI K
Sbjct: 133 RQRQVDVAVIEVGIGGDTDSTNVI-TPVVSVLTEVALDHQKLLGHTITAIAKHKAGIIKR 191
Query: 209 GVPAFT 214
G+P T
Sbjct: 192 GIPVVT 197
>pdb|1JBV|A Chain A, Fpgs-Amppcp Complex
pdb|1JBW|A Chain A, Fpgs-Amppcp-Folate Complex
Length = 428
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 101/186 (54%), Gaps = 10/186 (5%)
Query: 36 RFELLSDYLKILDLDVAIS----QLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSP 91
R D+ +IL L A+ Q + IHV GT GKGS +L G GL+TSP
Sbjct: 15 RLAKTGDHRRILTLLHALGNPQQQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSP 74
Query: 92 HLIDVRERFRLDGDDISEDKF---LAYFWWCYDRLKEKATEDIPMPSYFRFLALLAFKIF 148
++ ER +D + I + +A+ +RL+++ D + + F F+ LA+ F
Sbjct: 75 FIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQA-DFNV-TEFEFITALAYWYF 132
Query: 149 TAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKY 208
Q+DVA++EVG+GG D+TNV+ PVV ++ + DH ++LG+T+ IA AGI K
Sbjct: 133 RQRQVDVAVIEVGIGGDTDSTNVI-TPVVSVLTEVALDHQKLLGHTITAIAKHXAGIIKR 191
Query: 209 GVPAFT 214
G+P T
Sbjct: 192 GIPVVT 197
>pdb|2GCB|A Chain A, G51sS52T DOUBLE MUTANT OF L. CASEI FPGS
Length = 428
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 101/186 (54%), Gaps = 10/186 (5%)
Query: 36 RFELLSDYLKILDLDVAIS----QLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSP 91
R D+ +IL L A+ Q + IHV GT GK + +L G GL+TSP
Sbjct: 15 RLAKTGDHRRILTLLHALGNPQQQGRYIHVTGTNGKSTAANAIAHVLEASGLTVGLYTSP 74
Query: 92 HLIDVRERFRLDGDDISEDKFL---AYFWWCYDRLKEKATEDIPMPSYFRFLALLAFKIF 148
++ ER +D + I + + A+ +RL+++ D + + F F+ L + F
Sbjct: 75 FIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQA-DFNV-TEFEFITALGYWYF 132
Query: 149 TAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKY 208
Q+DVA++EVG+GG D+TNV+ PVV ++S+ DH ++LG+T+ IA KAGI K
Sbjct: 133 RQRQVDVAVIEVGIGGDTDSTNVI-TPVVSVLTSVALDHQKLLGHTITAIAKHKAGIIKR 191
Query: 209 GVPAFT 214
G+P T
Sbjct: 192 GIPVVT 197
>pdb|2GC6|A Chain A, S73a Mutant Of L. Casei Fpgs
Length = 428
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 100/186 (53%), Gaps = 10/186 (5%)
Query: 36 RFELLSDYLKILDLDVAIS----QLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSP 91
R D+ +IL L A+ Q + IHV GT GKGS +L G GL+T+P
Sbjct: 15 RLAKTGDHRRILTLLHALGNPQQQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTAP 74
Query: 92 HLIDVRERFRLDGDDISEDKF---LAYFWWCYDRLKEKATEDIPMPSYFRFLALLAFKIF 148
++ ER +D + I + +A+ +RL+++ D + + F F+ L + F
Sbjct: 75 FIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQA-DFNV-TEFEFITALGYWYF 132
Query: 149 TAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKY 208
Q+DVA++EVG+GG D+TNV+ PVV ++ + DH ++LG+T+ IA AGI K
Sbjct: 133 RQRQVDVAVIEVGIGGDTDSTNVI-TPVVSVLTEVALDHQKLLGHTITAIAKHXAGIIKR 191
Query: 209 GVPAFT 214
G+P T
Sbjct: 192 GIPVVT 197
>pdb|2GC5|A Chain A, G51s Mutant Of L. Casei Fpgs
Length = 428
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 99/186 (53%), Gaps = 10/186 (5%)
Query: 36 RFELLSDYLKILDLDVAIS----QLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSP 91
R D+ +IL L A+ Q + IHV GT GK S +L G GL+TSP
Sbjct: 15 RLAKTGDHRRILTLLHALGNPQQQGRYIHVTGTNGKSSAANAIAHVLEASGLTVGLYTSP 74
Query: 92 HLIDVRERFRLDGDDISEDKF---LAYFWWCYDRLKEKATEDIPMPSYFRFLALLAFKIF 148
++ ER +D + I + +A+ +RL+++ D + + F F+ L + F
Sbjct: 75 FIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQA-DFNV-TEFEFITALGYWYF 132
Query: 149 TAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKY 208
Q+DVA++EVG+GG D+TNV+ PVV ++ + DH ++LG+T+ IA AGI K
Sbjct: 133 RQRQVDVAVIEVGIGGDTDSTNVI-TPVVSVLTEVALDHQKLLGHTITAIAKHXAGIIKR 191
Query: 209 GVPAFT 214
G+P T
Sbjct: 192 GIPVVT 197
>pdb|2VOR|A Chain A, Crystal Structures Of Mycobacterium Tuberculosis
Folylpolyglutamate Synthase Complexed With Adp And
Amppcp
Length = 487
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 85/155 (54%), Gaps = 8/155 (5%)
Query: 59 IHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYF-- 116
IH+AGT GK S ++++ RTG TSPHL ER +DG IS +++A +
Sbjct: 67 IHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQSPVERISIDGKPISPAQYVATYRE 126
Query: 117 -----WWCYDRLKEKATEDIPMPSYFRFLALLAFKIFTAEQIDVAILEVGLGGRFDATNV 171
+ + A + P S F L +AF F +DVA++EVG+GGR+DATNV
Sbjct: 127 IEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAFADAPVDVAVVEVGMGGRWDATNV 186
Query: 172 VQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIF 206
+ PV I+ + DH++ LG + IAGEKAGI
Sbjct: 187 INAPVAV-ITPISIDHVDYLGADIAGIAGEKAGII 220
>pdb|2VOS|A Chain A, Mycobacterium Tuberculosis Folylpolyglutamate Synthase
Complexed With Adp
Length = 487
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 83/155 (53%), Gaps = 8/155 (5%)
Query: 59 IHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYF-- 116
IH+AGT GK S ++++ RTG TSPHL ER +DG IS +++A +
Sbjct: 67 IHIAGTNGKTSVARXVDALVTALHRRTGRTTSPHLQSPVERISIDGKPISPAQYVATYRE 126
Query: 117 -----WWCYDRLKEKATEDIPMPSYFRFLALLAFKIFTAEQIDVAILEVGLGGRFDATNV 171
+ + A + P S F L AF F +DVA++EVG GGR+DATNV
Sbjct: 127 IEPLVALIDQQSQASAGKGGPAXSKFEVLTAXAFAAFADAPVDVAVVEVGXGGRWDATNV 186
Query: 172 VQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIF 206
+ PV I+ + DH++ LG + IAGEKAGI
Sbjct: 187 INAPVAV-ITPISIDHVDYLGADIAGIAGEKAGII 220
>pdb|1JNH|A Chain A, Crystal Structure Of Fab-Estradiol Complexes
pdb|1JNH|C Chain C, Crystal Structure Of Fab-Estradiol Complexes
pdb|1JNH|E Chain E, Crystal Structure Of Fab-Estradiol Complexes
pdb|1JNH|G Chain G, Crystal Structure Of Fab-Estradiol Complexes
Length = 212
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 292 PEQFIQGLTMANLQGRAQIVPDRYTNSETSGDLVFYLDGAHSP-ESMEICARWFS 345
P+ GL ++ RA VP R++ S + GA + E++ ICA WFS
Sbjct: 42 PDHLFTGL-ISGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYICALWFS 95
>pdb|1JN6|A Chain A, Crystal Structure Of Fab-Estradiol Complexes
Length = 210
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 292 PEQFIQGLTMANLQGRAQIVPDRYTNSETSGDLVFYLDGAHSP-ESMEICARWFS 345
P+ GL ++ RA VP R++ S + GA + E++ ICA WFS
Sbjct: 42 PDHLFTGL-ISGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYICALWFS 95
>pdb|1FTE|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Acyl Carrier
Protein Synthase (Native 1)
pdb|1FTE|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Acyl Carrier
Protein Synthase (Native 1)
pdb|1FTE|C Chain C, Crystal Structure Of Streptococcus Pneumoniae Acyl Carrier
Protein Synthase (Native 1)
pdb|1FTF|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Acyl Carrier
Protein Synthase (Native 2)
pdb|1FTF|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Acyl Carrier
Protein Synthase (Native 2)
pdb|1FTF|C Chain C, Crystal Structure Of Streptococcus Pneumoniae Acyl Carrier
Protein Synthase (Native 2)
pdb|1FTH|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Acyl Carrier
Protein Synthase (3'5'-Adp Complex)
pdb|1FTH|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Acyl Carrier
Protein Synthase (3'5'-Adp Complex)
pdb|1FTH|C Chain C, Crystal Structure Of Streptococcus Pneumoniae Acyl Carrier
Protein Synthase (3'5'-Adp Complex)
Length = 122
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 162 LGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLG 196
L GR+ A K + GIS LG+ +E+L N G
Sbjct: 52 LAGRWSAKEAFSKAMGTGISKLGFQDLEVLNNERG 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,630,218
Number of Sequences: 62578
Number of extensions: 571017
Number of successful extensions: 1298
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1261
Number of HSP's gapped (non-prelim): 19
length of query: 536
length of database: 14,973,337
effective HSP length: 103
effective length of query: 433
effective length of database: 8,527,803
effective search space: 3692538699
effective search space used: 3692538699
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)