Query 048728
Match_columns 536
No_of_seqs 341 out of 2453
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 12:27:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048728.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048728hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02881 tetrahydrofolylpolygl 100.0 6E-100 1E-104 818.7 54.8 524 2-536 7-530 (530)
2 KOG2525 Folylpolyglutamate syn 100.0 6.1E-93 1.3E-97 736.8 37.7 467 5-536 15-494 (496)
3 COG0285 FolC Folylpolyglutamat 100.0 1.2E-78 2.6E-83 639.6 44.6 404 9-535 2-422 (427)
4 PLN02913 dihydrofolate synthet 100.0 3.8E-76 8.3E-81 642.1 48.0 443 9-535 24-509 (510)
5 TIGR01499 folC folylpolyglutam 100.0 4.8E-73 1E-77 602.8 43.6 382 37-534 1-397 (397)
6 PRK10846 bifunctional folylpol 100.0 1.2E-68 2.6E-73 572.1 43.6 393 9-535 11-415 (416)
7 PRK00139 murE UDP-N-acetylmura 100.0 8.4E-47 1.8E-51 408.7 30.9 343 36-525 72-434 (460)
8 PRK14022 UDP-N-acetylmuramoyla 100.0 1.8E-44 3.8E-49 392.7 32.3 346 37-525 88-456 (481)
9 PRK11929 putative bifunctional 100.0 3E-44 6.4E-49 420.3 34.9 351 37-525 90-474 (958)
10 COG0769 MurE UDP-N-acetylmuram 100.0 1.3E-43 2.8E-48 381.8 34.9 338 45-525 80-449 (475)
11 TIGR02068 cya_phycin_syn cyano 100.0 2.4E-42 5.2E-47 397.4 37.1 345 39-524 462-850 (864)
12 TIGR01085 murE UDP-N-acetylmur 100.0 1E-41 2.2E-46 369.5 31.9 354 37-525 63-448 (464)
13 TIGR01143 murF UDP-N-acetylmur 100.0 9.7E-41 2.1E-45 357.2 31.1 278 36-424 53-364 (417)
14 PRK01438 murD UDP-N-acetylmura 100.0 5.1E-39 1.1E-43 349.8 31.2 253 52-423 118-400 (480)
15 PRK01390 murD UDP-N-acetylmura 100.0 6E-38 1.3E-42 339.7 31.8 213 55-342 113-351 (460)
16 PRK14093 UDP-N-acetylmuramoyla 100.0 4.8E-38 1E-42 341.9 30.5 288 37-423 88-408 (479)
17 PRK03803 murD UDP-N-acetylmura 100.0 1.1E-37 2.3E-42 336.6 30.8 253 55-423 107-378 (448)
18 PRK00421 murC UDP-N-acetylmura 100.0 4E-37 8.6E-42 333.4 35.4 313 56-528 107-447 (461)
19 PRK10773 murF UDP-N-acetylmura 100.0 2E-37 4.3E-42 335.0 31.0 279 39-423 82-392 (453)
20 PRK04308 murD UDP-N-acetylmura 100.0 3.4E-37 7.3E-42 332.5 31.1 249 55-424 109-377 (445)
21 PRK11929 putative bifunctional 100.0 1.1E-36 2.4E-41 356.5 32.7 330 37-525 583-947 (958)
22 PRK02705 murD UDP-N-acetylmura 100.0 1E-36 2.2E-41 329.8 29.6 251 55-423 108-382 (459)
23 PRK03369 murD UDP-N-acetylmura 100.0 9.1E-37 2E-41 332.5 29.3 245 57-424 118-384 (488)
24 PRK03806 murD UDP-N-acetylmura 100.0 1.3E-36 2.8E-41 327.3 28.9 240 55-405 104-360 (438)
25 PRK02006 murD UDP-N-acetylmura 100.0 4.9E-36 1.1E-40 327.9 32.6 269 37-423 104-421 (498)
26 TIGR01081 mpl UDP-N-acetylmura 100.0 6E-36 1.3E-40 323.1 31.8 218 57-345 103-344 (448)
27 TIGR01087 murD UDP-N-acetylmur 100.0 1E-35 2.2E-40 319.9 31.3 210 55-342 101-328 (433)
28 PRK04690 murD UDP-N-acetylmura 100.0 9E-36 2E-40 323.1 30.9 238 56-406 115-370 (468)
29 TIGR01082 murC UDP-N-acetylmur 100.0 1.4E-35 3E-40 320.3 32.1 316 56-528 99-442 (448)
30 PRK01368 murD UDP-N-acetylmura 100.0 1.6E-35 3.6E-40 319.5 31.4 212 55-342 103-339 (454)
31 PRK14573 bifunctional D-alanyl 100.0 1.9E-35 4.1E-40 340.0 33.0 258 56-424 104-379 (809)
32 PRK11930 putative bifunctional 100.0 7E-36 1.5E-40 344.3 29.1 329 36-524 86-442 (822)
33 PRK14106 murD UDP-N-acetylmura 100.0 1.9E-35 4E-40 319.2 29.8 245 56-422 108-379 (450)
34 COG0771 MurD UDP-N-acetylmuram 100.0 3.4E-35 7.4E-40 311.0 28.7 212 55-342 109-340 (448)
35 PRK02472 murD UDP-N-acetylmura 100.0 5.4E-35 1.2E-39 315.3 30.2 211 55-342 107-339 (447)
36 PRK00141 murD UDP-N-acetylmura 100.0 8.5E-35 1.8E-39 315.9 29.5 244 57-423 122-389 (473)
37 COG0773 MurC UDP-N-acetylmuram 100.0 3.7E-34 8E-39 300.3 31.6 258 55-423 106-388 (459)
38 COG0770 MurF UDP-N-acetylmuram 100.0 9.2E-34 2E-38 302.5 32.3 334 36-534 82-448 (451)
39 PRK04663 murD UDP-N-acetylmura 100.0 2.3E-33 5.1E-38 302.1 29.0 212 55-342 107-333 (438)
40 PRK01710 murD UDP-N-acetylmura 100.0 7.3E-33 1.6E-37 299.8 29.8 247 55-424 116-384 (458)
41 PRK00683 murD UDP-N-acetylmura 100.0 8.1E-32 1.8E-36 288.5 26.5 241 55-423 101-346 (418)
42 PRK03815 murD UDP-N-acetylmura 100.0 6.3E-28 1.4E-32 256.5 27.9 196 57-342 90-294 (401)
43 PRK14016 cyanophycin synthetas 99.9 7E-25 1.5E-29 248.6 21.6 219 40-310 464-726 (727)
44 PF08245 Mur_ligase_M: Mur lig 99.9 9.4E-25 2E-29 208.5 15.0 165 61-270 1-188 (188)
45 PF02875 Mur_ligase_C: Mur lig 99.4 9.4E-13 2E-17 111.2 8.4 77 304-424 1-80 (91)
46 COG1703 ArgK Putative periplas 97.0 0.0034 7.4E-08 63.7 9.7 155 40-219 37-201 (323)
47 PF03308 ArgK: ArgK protein; 95.9 0.084 1.8E-06 53.0 11.3 156 39-219 14-179 (266)
48 TIGR00750 lao LAO/AO transport 94.9 0.28 6.2E-06 50.5 11.8 48 40-89 20-69 (300)
49 PHA02519 plasmid partition pro 93.5 0.17 3.7E-06 54.1 6.9 56 34-89 81-142 (387)
50 PRK13705 plasmid-partitioning 93.3 0.2 4.3E-06 53.6 7.0 55 34-88 81-141 (388)
51 COG1072 CoaA Panthothenate kin 93.0 1.1 2.5E-05 45.3 11.4 50 41-91 68-121 (283)
52 PRK13869 plasmid-partitioning 92.5 0.33 7.1E-06 52.3 7.3 37 52-88 117-156 (405)
53 PRK09435 membrane ATPase/prote 92.5 0.68 1.5E-05 48.5 9.4 49 40-90 42-92 (332)
54 COG2403 Predicted GTPase [Gene 91.8 1 2.3E-05 47.3 9.6 37 55-91 125-164 (449)
55 TIGR03018 pepcterm_TyrKin exop 91.0 0.61 1.3E-05 45.1 6.8 52 37-88 15-71 (207)
56 TIGR03029 EpsG chain length de 90.9 0.51 1.1E-05 47.6 6.4 52 37-88 84-138 (274)
57 TIGR03172 probable selenium-de 90.5 0.31 6.7E-06 48.4 4.3 37 58-94 1-37 (232)
58 TIGR01007 eps_fam capsular exo 90.4 0.68 1.5E-05 44.5 6.5 47 37-88 3-52 (204)
59 PRK01077 cobyrinic acid a,c-di 90.0 1.3 2.8E-05 48.4 8.9 35 56-90 3-40 (451)
60 COG1763 MobB Molybdopterin-gua 89.9 0.41 8.9E-06 44.8 4.3 37 56-92 2-40 (161)
61 cd02040 NifH NifH gene encodes 89.1 0.51 1.1E-05 47.2 4.7 32 57-88 2-35 (270)
62 PRK00652 lpxK tetraacyldisacch 88.8 1.2 2.5E-05 46.7 7.1 52 38-89 30-86 (325)
63 PRK10416 signal recognition pa 88.6 2.9 6.3E-05 43.5 9.9 36 56-91 114-151 (318)
64 TIGR03453 partition_RepA plasm 88.5 1.1 2.4E-05 47.8 7.0 37 52-88 100-139 (387)
65 cd01983 Fer4_NifH The Fer4_Nif 88.2 0.68 1.5E-05 37.7 4.1 31 59-89 2-34 (99)
66 cd02117 NifH_like This family 87.3 0.81 1.8E-05 44.4 4.7 31 58-88 2-34 (212)
67 PRK13232 nifH nitrogenase redu 86.8 0.87 1.9E-05 46.0 4.7 32 57-88 2-35 (273)
68 PF00448 SRP54: SRP54-type pro 85.4 0.93 2E-05 43.8 3.9 33 58-91 6-38 (196)
69 cd03114 ArgK-like The function 85.1 4.6 0.0001 37.0 8.2 57 150-216 89-146 (148)
70 PHA02518 ParA-like protein; Pr 85.1 1.2 2.6E-05 42.5 4.6 31 58-88 2-35 (211)
71 PRK15453 phosphoribulokinase; 84.9 1.4 3E-05 45.1 5.0 34 54-87 3-38 (290)
72 COG0132 BioD Dethiobiotin synt 84.9 1.2 2.6E-05 43.9 4.5 34 56-89 2-38 (223)
73 PRK13235 nifH nitrogenase redu 84.9 1.3 2.7E-05 44.9 4.8 32 57-88 2-35 (274)
74 PRK10037 cell division protein 84.4 1.4 3E-05 44.0 4.7 32 57-88 2-36 (250)
75 TIGR03371 cellulose_yhjQ cellu 84.2 1.4 3.1E-05 43.2 4.8 32 57-88 2-36 (246)
76 COG1797 CobB Cobyrinic acid a, 83.8 11 0.00024 40.7 11.3 28 59-86 3-33 (451)
77 PRK07667 uridine kinase; Provi 83.8 3.5 7.6E-05 39.4 7.1 35 57-91 18-54 (193)
78 KOG0780 Signal recognition par 83.6 2.6 5.6E-05 44.7 6.4 84 56-162 101-193 (483)
79 PRK14494 putative molybdopteri 83.6 1.6 3.6E-05 43.2 4.8 37 56-92 1-39 (229)
80 PRK05439 pantothenate kinase; 83.4 17 0.00037 37.7 12.4 34 56-89 86-123 (311)
81 PRK13230 nitrogenase reductase 83.2 1.5 3.3E-05 44.4 4.6 32 57-88 2-35 (279)
82 PRK13896 cobyrinic acid a,c-di 83.2 6.4 0.00014 42.8 9.5 33 58-90 3-38 (433)
83 PRK13849 putative crown gall t 83.0 1.7 3.7E-05 43.1 4.7 32 57-88 2-36 (231)
84 COG2894 MinD Septum formation 82.9 1.5 3.2E-05 43.2 3.9 33 57-89 3-38 (272)
85 cd02032 Bchl_like This family 82.5 1.7 3.8E-05 43.6 4.6 31 58-88 2-34 (267)
86 PRK13234 nifH nitrogenase redu 82.2 1.9 4.1E-05 44.3 4.8 34 55-88 3-38 (295)
87 PRK13185 chlL protochlorophyll 81.9 1.9 4E-05 43.4 4.6 32 57-88 3-36 (270)
88 TIGR00064 ftsY signal recognit 81.9 2.9 6.3E-05 42.5 6.0 36 55-90 71-108 (272)
89 PF00485 PRK: Phosphoribulokin 81.9 1.7 3.6E-05 41.6 4.0 27 58-84 1-29 (194)
90 TIGR02016 BchX chlorophyllide 81.8 1.9 4.1E-05 44.4 4.6 31 58-88 2-34 (296)
91 TIGR01968 minD_bact septum sit 81.8 1.9 4.1E-05 42.6 4.5 32 57-88 2-36 (261)
92 TIGR01287 nifH nitrogenase iro 81.7 1.9 4E-05 43.6 4.5 31 58-88 2-34 (275)
93 PRK11670 antiporter inner memb 81.4 1.9 4.2E-05 45.8 4.7 33 56-88 107-142 (369)
94 TIGR00682 lpxK tetraacyldisacc 81.1 4.3 9.2E-05 42.2 7.0 52 38-89 9-65 (311)
95 cd02033 BchX Chlorophyllide re 79.9 2.8 6E-05 43.9 5.1 38 52-89 27-66 (329)
96 COG1618 Predicted nucleotide k 79.7 3.2 6.9E-05 39.0 4.8 34 58-91 7-42 (179)
97 cd03116 MobB Molybdenum is an 79.4 3 6.5E-05 38.9 4.7 35 56-90 1-37 (159)
98 cd02035 ArsA ArsA ATPase funct 79.3 16 0.00035 35.5 10.1 28 63-90 8-35 (217)
99 PRK14495 putative molybdopteri 79.1 2.7 5.9E-05 45.5 4.8 37 56-92 1-39 (452)
100 PF03205 MobB: Molybdopterin g 78.9 2.8 6E-05 38.2 4.2 35 57-91 1-37 (140)
101 PRK13233 nifH nitrogenase redu 78.9 2.6 5.5E-05 42.5 4.4 32 57-88 3-37 (275)
102 PRK13236 nitrogenase reductase 78.7 3 6.6E-05 42.8 5.0 35 54-88 4-40 (296)
103 PF13500 AAA_26: AAA domain; P 78.2 2.6 5.7E-05 40.2 4.1 32 58-89 2-36 (199)
104 TIGR01969 minD_arch cell divis 78.2 3 6.6E-05 41.0 4.6 31 58-88 2-35 (251)
105 PF01656 CbiA: CobQ/CobB/MinD/ 77.8 2.7 5.8E-05 39.4 3.9 32 58-89 3-34 (195)
106 KOG3022 Predicted ATPase, nucl 77.3 3.1 6.8E-05 42.2 4.3 32 57-88 48-82 (300)
107 PRK09841 cryptic autophosphory 77.2 4.6 0.0001 46.9 6.4 51 38-88 513-566 (726)
108 PRK01906 tetraacyldisaccharide 77.1 7 0.00015 41.1 7.1 51 39-89 38-93 (338)
109 COG1663 LpxK Tetraacyldisaccha 76.9 6.1 0.00013 41.3 6.4 52 37-90 30-85 (336)
110 PRK14493 putative bifunctional 76.9 3.5 7.6E-05 42.0 4.7 35 56-91 1-37 (274)
111 PRK13231 nitrogenase reductase 76.8 1.8 3.9E-05 43.4 2.6 31 57-88 3-35 (264)
112 PRK05632 phosphate acetyltrans 76.8 21 0.00045 41.2 11.5 33 58-91 4-39 (684)
113 cd02036 MinD Bacterial cell di 76.4 3 6.5E-05 38.6 3.8 30 59-88 5-34 (179)
114 PRK00784 cobyric acid synthase 76.4 2.7 5.9E-05 46.4 4.1 34 57-90 3-39 (488)
115 cd02037 MRP-like MRP (Multiple 76.3 3.5 7.5E-05 38.3 4.2 27 62-88 8-34 (169)
116 PRK12374 putative dithiobiotin 76.1 3.5 7.7E-05 40.6 4.4 32 58-89 4-38 (231)
117 COG1936 Predicted nucleotide k 76.1 2.5 5.5E-05 40.0 3.1 24 58-85 2-27 (180)
118 COG0552 FtsY Signal recognitio 75.7 8.2 0.00018 40.3 7.0 33 55-87 138-172 (340)
119 COG0489 Mrp ATPases involved i 75.7 3.9 8.4E-05 41.5 4.6 34 55-88 56-92 (265)
120 PF06564 YhjQ: YhjQ protein; 75.6 3.2 7E-05 41.5 4.0 30 58-87 6-35 (243)
121 PRK10818 cell division inhibit 75.5 3.8 8.2E-05 41.1 4.5 32 57-88 3-37 (270)
122 TIGR03815 CpaE_hom_Actino heli 75.4 7.4 0.00016 40.3 6.8 51 37-88 75-128 (322)
123 PF09140 MipZ: ATPase MipZ; I 75.2 3.8 8.3E-05 41.1 4.3 31 58-88 2-35 (261)
124 CHL00175 minD septum-site dete 75.0 3.9 8.4E-05 41.3 4.5 33 56-88 15-50 (281)
125 PF02606 LpxK: Tetraacyldisacc 74.3 9.2 0.0002 40.0 7.1 54 38-91 16-74 (326)
126 cd02025 PanK Pantothenate kina 74.1 4 8.7E-05 40.1 4.2 23 58-80 1-25 (220)
127 TIGR00176 mobB molybdopterin-g 74.1 4.1 9E-05 37.7 4.0 33 58-90 1-35 (155)
128 TIGR00554 panK_bact pantothena 73.7 4.4 9.5E-05 41.7 4.5 26 56-81 62-89 (290)
129 PF07015 VirC1: VirC1 protein; 73.6 5 0.00011 39.8 4.6 33 57-89 2-37 (231)
130 cd02028 UMPK_like Uridine mono 73.5 4.6 0.0001 38.2 4.4 33 58-90 1-35 (179)
131 TIGR01281 DPOR_bchL light-inde 73.4 3.4 7.4E-05 41.4 3.6 27 62-88 8-34 (268)
132 PRK14974 cell division protein 73.0 5.4 0.00012 41.9 5.0 35 56-90 140-176 (336)
133 PRK14489 putative bifunctional 72.8 9 0.0002 40.6 6.8 56 36-92 186-243 (366)
134 PRK06761 hypothetical protein; 72.4 29 0.00063 35.6 10.0 58 57-116 4-63 (282)
135 PRK00090 bioD dithiobiotin syn 71.7 5 0.00011 39.0 4.2 30 60-89 3-35 (222)
136 TIGR01425 SRP54_euk signal rec 71.6 9.3 0.0002 41.5 6.5 35 56-90 100-136 (429)
137 cd02029 PRK_like Phosphoribulo 71.3 5.2 0.00011 40.7 4.3 32 58-89 1-34 (277)
138 PRK11519 tyrosine kinase; Prov 71.1 8.7 0.00019 44.6 6.6 52 37-88 507-561 (719)
139 CHL00072 chlL photochlorophyll 69.5 4.7 0.0001 41.3 3.7 30 59-88 3-34 (290)
140 COG3367 Uncharacterized conser 68.5 19 0.00041 37.5 7.6 40 52-91 144-186 (339)
141 cd02042 ParA ParA and ParB of 68.2 7.6 0.00017 32.7 4.1 31 58-88 4-34 (104)
142 PRK10751 molybdopterin-guanine 67.9 7.8 0.00017 36.8 4.5 36 55-90 5-42 (173)
143 TIGR02880 cbbX_cfxQ probable R 66.8 8.6 0.00019 39.3 4.9 44 40-84 43-88 (284)
144 PRK06696 uridine kinase; Valid 66.6 8.9 0.00019 37.5 4.8 33 55-87 21-55 (223)
145 TIGR00313 cobQ cobyric acid sy 65.8 5.7 0.00012 43.7 3.6 27 65-91 10-36 (475)
146 PLN02796 D-glycerate 3-kinase 65.4 11 0.00024 39.7 5.4 31 57-87 101-133 (347)
147 PRK00771 signal recognition pa 65.3 14 0.00029 40.4 6.3 36 56-91 95-132 (437)
148 TIGR01005 eps_transp_fam exopo 65.3 11 0.00024 43.9 6.0 51 38-88 528-581 (754)
149 cd01672 TMPK Thymidine monopho 65.2 11 0.00023 35.3 4.9 34 58-91 2-37 (200)
150 COG4240 Predicted kinase [Gene 64.2 16 0.00036 36.3 5.9 35 54-88 48-85 (300)
151 cd03109 DTBS Dethiobiotin synt 64.2 7.6 0.00016 34.9 3.5 29 61-89 5-34 (134)
152 PF02374 ArsA_ATPase: Anion-tr 64.0 11 0.00024 39.0 5.1 34 57-90 2-37 (305)
153 KOG3347 Predicted nucleotide k 63.1 6.4 0.00014 36.6 2.7 27 52-78 3-31 (176)
154 PRK09270 nucleoside triphospha 62.0 19 0.0004 35.4 6.1 31 54-84 31-63 (229)
155 PRK06995 flhF flagellar biosyn 61.9 21 0.00045 39.4 7.0 34 56-89 256-293 (484)
156 TIGR00379 cobB cobyrinic acid 61.0 10 0.00023 41.3 4.5 28 62-89 7-35 (449)
157 COG0572 Udk Uridine kinase [Nu 60.9 9.1 0.0002 37.7 3.6 28 54-81 6-35 (218)
158 PRK11889 flhF flagellar biosyn 60.7 19 0.00041 38.9 6.2 34 57-90 242-277 (436)
159 COG4615 PvdE ABC-type sideroph 60.6 7.2 0.00016 41.8 2.9 45 55-114 348-394 (546)
160 PRK14491 putative bifunctional 60.5 12 0.00027 42.4 5.1 38 55-92 9-48 (597)
161 PLN03046 D-glycerate 3-kinase; 60.2 17 0.00037 39.4 5.8 44 56-111 212-257 (460)
162 PF13614 AAA_31: AAA domain; P 59.6 13 0.00029 33.5 4.3 33 57-89 1-36 (157)
163 cd02034 CooC The accessory pro 59.5 13 0.00028 32.7 4.0 28 63-90 8-35 (116)
164 COG0769 MurE UDP-N-acetylmuram 58.7 8.9 0.00019 42.2 3.4 96 55-192 63-160 (475)
165 COG1192 Soj ATPases involved i 58.7 11 0.00024 37.4 4.0 31 58-88 7-38 (259)
166 COG0003 ArsA Predicted ATPase 58.2 80 0.0017 33.0 10.2 104 57-160 3-133 (322)
167 cd00550 ArsA_ATPase Oxyanion-t 57.2 55 0.0012 32.7 8.7 28 63-90 9-36 (254)
168 COG3640 CooC CO dehydrogenase 57.1 15 0.00032 36.7 4.2 30 58-87 2-34 (255)
169 TIGR00347 bioD dethiobiotin sy 57.1 13 0.00028 34.3 3.8 25 64-88 8-32 (166)
170 COG0125 Tmk Thymidylate kinase 57.0 12 0.00025 36.6 3.6 36 57-92 4-41 (208)
171 cd03111 CpaE_like This protein 56.8 14 0.00031 31.6 3.7 29 60-88 6-35 (106)
172 TIGR00041 DTMP_kinase thymidyl 56.2 19 0.0004 34.0 4.9 35 57-91 4-40 (195)
173 cd03115 SRP The signal recogni 56.2 19 0.0004 33.4 4.8 34 58-91 2-37 (173)
174 PLN02924 thymidylate kinase 56.1 21 0.00045 35.1 5.3 41 51-91 11-53 (220)
175 PRK12723 flagellar biosynthesi 55.4 29 0.00063 37.3 6.6 34 57-90 175-214 (388)
176 PF07755 DUF1611: Protein of u 55.3 17 0.00036 37.6 4.6 37 55-91 111-150 (301)
177 PRK05703 flhF flagellar biosyn 55.0 24 0.00053 38.3 6.0 35 57-91 222-260 (424)
178 cd02023 UMPK Uridine monophosp 55.0 15 0.00033 34.9 4.0 30 58-89 1-32 (198)
179 COG3954 PrkB Phosphoribulokina 54.9 7.9 0.00017 37.4 1.9 31 54-84 3-35 (289)
180 COG0541 Ffh Signal recognition 54.7 12 0.00026 40.4 3.5 35 57-91 101-137 (451)
181 TIGR03499 FlhF flagellar biosy 54.7 28 0.00061 35.5 6.2 37 55-91 193-233 (282)
182 PF06418 CTP_synth_N: CTP synt 52.9 17 0.00036 36.9 3.9 32 57-88 2-37 (276)
183 PRK14721 flhF flagellar biosyn 52.0 35 0.00076 37.0 6.6 37 55-91 190-230 (420)
184 TIGR00455 apsK adenylylsulfate 51.9 28 0.0006 32.7 5.2 33 56-88 18-52 (184)
185 PRK12726 flagellar biosynthesi 50.2 23 0.0005 38.0 4.7 37 55-91 205-243 (407)
186 PRK12377 putative replication 50.2 18 0.00039 36.3 3.8 35 57-91 102-138 (248)
187 PRK10867 signal recognition pa 48.5 26 0.00056 38.2 4.9 35 56-90 100-137 (433)
188 cd02019 NK Nucleoside/nucleoti 48.5 27 0.00059 27.3 3.9 31 58-90 1-33 (69)
189 PRK07933 thymidylate kinase; V 48.2 29 0.00062 33.8 4.8 34 58-91 2-37 (213)
190 PRK00698 tmk thymidylate kinas 48.1 30 0.00064 32.7 4.8 35 57-91 4-40 (205)
191 PLN02974 adenosylmethionine-8- 48.1 22 0.00048 41.9 4.6 35 54-88 25-62 (817)
192 PRK14722 flhF flagellar biosyn 47.0 18 0.00039 38.6 3.4 36 56-91 137-176 (374)
193 PF13207 AAA_17: AAA domain; P 46.9 17 0.00038 31.1 2.8 25 58-85 1-27 (121)
194 TIGR00959 ffh signal recogniti 45.8 46 0.00099 36.3 6.3 34 57-90 100-136 (428)
195 KOG2749 mRNA cleavage and poly 45.3 40 0.00087 35.7 5.4 31 55-85 103-134 (415)
196 cd00477 FTHFS Formyltetrahydro 45.2 39 0.00084 37.4 5.5 34 55-88 37-76 (524)
197 PRK00889 adenylylsulfate kinas 44.2 41 0.00088 31.2 5.0 32 57-88 5-38 (175)
198 COG0504 PyrG CTP synthase (UTP 43.7 31 0.00067 37.9 4.5 31 57-87 2-36 (533)
199 COG1125 OpuBA ABC-type proline 43.6 14 0.00031 37.3 1.9 38 58-110 29-68 (309)
200 PRK03846 adenylylsulfate kinas 43.2 43 0.00093 31.9 5.1 32 56-87 24-57 (198)
201 PF03029 ATP_bind_1: Conserved 43.0 20 0.00044 35.6 2.9 28 59-87 2-29 (238)
202 PF01121 CoaE: Dephospho-CoA k 42.9 20 0.00043 34.1 2.7 24 58-85 2-27 (180)
203 cd03113 CTGs CTP synthetase (C 42.5 37 0.00081 34.1 4.5 30 58-87 2-35 (255)
204 PRK13973 thymidylate kinase; P 42.0 29 0.00064 33.6 3.8 35 57-91 4-40 (213)
205 PRK06835 DNA replication prote 41.8 37 0.00081 35.5 4.7 37 54-91 184-220 (329)
206 KOG1805 DNA replication helica 40.9 37 0.00081 40.2 4.9 29 58-87 690-718 (1100)
207 PF10662 PduV-EutP: Ethanolami 40.8 1.3E+02 0.0028 27.6 7.6 51 150-206 61-116 (143)
208 COG4152 ABC-type uncharacteriz 40.7 22 0.00047 35.9 2.6 40 56-111 28-70 (300)
209 PF01583 APS_kinase: Adenylyls 40.6 47 0.001 30.9 4.7 34 57-90 3-38 (156)
210 PF08497 Radical_SAM_N: Radica 40.5 36 0.00079 34.9 4.2 48 40-91 5-55 (302)
211 PRK05480 uridine/cytidine kina 40.3 44 0.00095 32.0 4.7 24 55-78 5-30 (209)
212 PF01935 DUF87: Domain of unkn 39.8 30 0.00065 33.6 3.5 32 55-87 25-57 (229)
213 PRK13768 GTPase; Provisional 39.6 42 0.0009 33.6 4.5 31 58-88 4-36 (253)
214 PRK14723 flhF flagellar biosyn 38.8 69 0.0015 37.5 6.6 35 57-91 186-224 (767)
215 PF13521 AAA_28: AAA domain; P 38.3 25 0.00055 32.2 2.6 19 59-77 2-22 (163)
216 COG4133 CcmA ABC-type transpor 37.6 30 0.00065 33.5 2.9 38 57-109 29-68 (209)
217 COG0237 CoaE Dephospho-CoA kin 37.2 28 0.00061 33.8 2.8 26 56-85 2-29 (201)
218 TIGR00337 PyrG CTP synthase. C 36.9 46 0.00099 37.1 4.6 31 57-87 2-36 (525)
219 PF01268 FTHFS: Formate--tetra 36.9 52 0.0011 36.8 5.0 42 43-87 44-91 (557)
220 PTZ00301 uridine kinase; Provi 36.3 61 0.0013 31.6 5.0 27 56-82 3-32 (210)
221 PF02223 Thymidylate_kin: Thym 36.2 21 0.00046 33.5 1.7 23 65-87 7-29 (186)
222 CHL00181 cbbX CbbX; Provisiona 36.0 54 0.0012 33.5 4.8 41 42-83 46-88 (287)
223 PRK13886 conjugal transfer pro 36.0 42 0.00091 33.6 3.8 27 62-88 11-37 (241)
224 cd02038 FleN-like FleN is a me 35.2 49 0.0011 29.6 3.9 31 58-88 4-34 (139)
225 COG5623 CLP1 Predicted GTPase 35.1 77 0.0017 33.0 5.5 48 37-85 81-130 (424)
226 COG0455 flhG Antiactivator of 34.6 55 0.0012 33.2 4.5 29 57-85 3-34 (262)
227 PF00580 UvrD-helicase: UvrD/R 34.6 34 0.00075 34.3 3.1 28 54-82 14-42 (315)
228 COG1131 CcmA ABC-type multidru 34.1 33 0.00072 35.2 2.9 39 56-109 31-71 (293)
229 cd02024 NRK1 Nicotinamide ribo 33.6 29 0.00063 33.3 2.2 21 58-78 1-23 (187)
230 KOG0057 Mitochondrial Fe/S clu 33.6 42 0.00091 37.4 3.6 38 56-109 378-417 (591)
231 PRK05380 pyrG CTP synthetase; 33.5 55 0.0012 36.6 4.6 32 56-87 2-37 (533)
232 COG1474 CDC6 Cdc6-related prot 33.5 2.2E+02 0.0047 30.3 9.0 44 36-81 25-69 (366)
233 PTZ00112 origin recognition co 33.3 44 0.00096 39.7 3.9 44 36-80 763-807 (1164)
234 PRK13506 formate--tetrahydrofo 33.2 60 0.0013 36.4 4.8 31 55-85 53-89 (578)
235 PRK13505 formate--tetrahydrofo 33.1 78 0.0017 35.5 5.6 34 55-88 54-93 (557)
236 PF11964 SpoIIAA-like: SpoIIAA 32.9 1.7E+02 0.0038 24.4 6.8 24 325-348 4-27 (109)
237 PF05378 Hydant_A_N: Hydantoin 32.9 1.2E+02 0.0025 28.8 6.1 52 37-95 36-89 (176)
238 PRK08233 hypothetical protein; 32.7 37 0.00081 31.3 2.8 23 57-79 4-28 (182)
239 cd03229 ABC_Class3 This class 32.3 34 0.00073 32.0 2.4 39 55-108 25-65 (178)
240 COG1419 FlhF Flagellar GTP-bin 32.2 38 0.00082 36.4 3.0 42 56-104 203-248 (407)
241 PLN02327 CTP synthase 32.0 59 0.0013 36.5 4.5 31 57-87 2-36 (557)
242 PF08433 KTI12: Chromatin asso 32.0 60 0.0013 33.0 4.3 34 56-89 1-36 (270)
243 KOG3354 Gluconate kinase [Carb 31.5 34 0.00073 32.2 2.1 22 57-79 16-37 (191)
244 PRK01254 hypothetical protein; 31.5 45 0.00098 38.2 3.5 55 36-94 24-81 (707)
245 PRK13695 putative NTPase; Prov 31.4 67 0.0015 29.7 4.3 28 59-86 3-32 (174)
246 PRK13889 conjugal transfer rel 31.1 50 0.0011 39.8 4.0 30 58-88 367-396 (988)
247 smart00053 DYNc Dynamin, GTPas 30.7 82 0.0018 31.5 4.9 41 36-77 7-49 (240)
248 KOG3308 Uncharacterized protei 30.7 38 0.00081 33.1 2.4 25 56-80 4-30 (225)
249 TIGR00235 udk uridine kinase. 30.7 53 0.0011 31.5 3.5 24 57-80 7-32 (207)
250 PRK14709 hypothetical protein; 30.7 1.1E+02 0.0023 33.8 6.2 19 62-80 213-231 (469)
251 PRK14490 putative bifunctional 30.5 63 0.0014 34.3 4.3 33 57-90 6-40 (369)
252 PRK13507 formate--tetrahydrofo 30.3 69 0.0015 35.9 4.6 33 55-87 62-100 (587)
253 PTZ00451 dephospho-CoA kinase; 30.3 43 0.00093 33.6 2.9 21 57-77 2-24 (244)
254 COG4167 SapF ABC-type antimicr 30.0 45 0.00098 32.3 2.8 42 54-110 37-80 (267)
255 PRK12724 flagellar biosynthesi 29.9 70 0.0015 34.8 4.5 34 57-90 224-260 (432)
256 PRK07414 cob(I)yrinic acid a,c 29.9 69 0.0015 30.6 4.0 31 57-87 22-54 (178)
257 PRK14235 phosphate transporter 29.5 57 0.0012 32.7 3.7 24 56-79 45-70 (267)
258 KOG1970 Checkpoint RAD17-RFC c 29.5 1E+02 0.0022 34.6 5.7 53 36-91 90-144 (634)
259 PRK07952 DNA replication prote 29.2 98 0.0021 30.9 5.2 34 58-91 101-136 (244)
260 TIGR00708 cobA cob(I)alamin ad 29.1 84 0.0018 29.8 4.4 30 57-86 6-37 (173)
261 PRK04040 adenylate kinase; Pro 29.0 60 0.0013 31.0 3.5 33 57-90 3-37 (188)
262 cd02022 DPCK Dephospho-coenzym 28.6 51 0.0011 30.9 3.0 24 58-85 1-26 (179)
263 PF12846 AAA_10: AAA-like doma 28.5 58 0.0013 32.3 3.6 29 58-87 6-34 (304)
264 TIGR02770 nickel_nikD nickel i 28.5 44 0.00096 32.5 2.6 25 55-79 11-37 (230)
265 cd00009 AAA The AAA+ (ATPases 28.5 1.1E+02 0.0023 26.0 4.9 30 57-86 20-51 (151)
266 PLN02759 Formate--tetrahydrofo 28.3 88 0.0019 35.4 5.0 32 55-86 68-106 (637)
267 PRK08154 anaerobic benzoate ca 28.2 1.4E+02 0.0031 30.7 6.5 41 38-78 114-157 (309)
268 PTZ00202 tuzin; Provisional 28.2 1.1E+02 0.0024 33.8 5.6 49 35-91 269-319 (550)
269 PF05673 DUF815: Protein of un 28.2 70 0.0015 32.2 3.9 46 37-87 40-85 (249)
270 cd02027 APSK Adenosine 5'-phos 28.0 88 0.0019 28.4 4.3 29 59-87 2-32 (149)
271 PRK10744 pstB phosphate transp 27.8 58 0.0012 32.4 3.3 25 55-79 38-64 (260)
272 PRK09518 bifunctional cytidyla 27.8 3.6E+02 0.0078 31.3 10.3 29 155-187 139-167 (712)
273 PRK06851 hypothetical protein; 27.7 88 0.0019 33.4 4.8 36 56-91 30-67 (367)
274 COG2805 PilT Tfp pilus assembl 27.6 1.9E+02 0.0042 30.2 7.0 27 57-83 126-155 (353)
275 PRK13976 thymidylate kinase; P 27.6 63 0.0014 31.4 3.5 34 58-91 2-39 (209)
276 cd00561 CobA_CobO_BtuR ATP:cor 27.2 99 0.0021 28.9 4.5 30 58-87 4-35 (159)
277 PRK05986 cob(I)alamin adenolsy 26.9 92 0.002 30.1 4.4 30 57-86 23-54 (191)
278 cd03255 ABC_MJ0796_Lo1CDE_FtsE 26.8 51 0.0011 31.6 2.7 38 56-108 30-69 (218)
279 PRK09493 glnQ glutamine ABC tr 26.7 50 0.0011 32.3 2.7 38 56-108 27-66 (240)
280 PRK13537 nodulation ABC transp 26.6 48 0.001 34.1 2.6 38 56-108 33-72 (306)
281 PF00142 Fer4_NifH: 4Fe-4S iro 26.4 75 0.0016 32.3 3.8 27 63-89 9-35 (273)
282 PRK12727 flagellar biosynthesi 26.4 1.8E+02 0.004 32.7 7.1 39 52-90 346-388 (559)
283 PLN02422 dephospho-CoA kinase 26.3 66 0.0014 32.0 3.4 25 57-85 2-28 (232)
284 PF13604 AAA_30: AAA domain; P 26.3 97 0.0021 29.6 4.5 29 60-89 25-53 (196)
285 cd03294 ABC_Pro_Gly_Bertaine T 26.0 52 0.0011 33.0 2.7 39 55-108 49-89 (269)
286 PRK14267 phosphate ABC transpo 26.0 57 0.0012 32.2 2.9 24 56-79 30-55 (253)
287 PLN02348 phosphoribulokinase 25.9 63 0.0014 34.7 3.3 27 55-81 48-76 (395)
288 PRK13826 Dtr system oriT relax 25.6 70 0.0015 39.0 4.0 30 58-88 402-431 (1102)
289 PRK11022 dppD dipeptide transp 25.6 53 0.0012 34.2 2.7 43 55-108 32-76 (326)
290 PRK14733 coaE dephospho-CoA ki 25.4 58 0.0013 31.7 2.7 25 57-84 7-33 (204)
291 cd01129 PulE-GspE PulE/GspE Th 25.4 3.1E+02 0.0068 27.5 8.2 34 57-91 81-117 (264)
292 COG0529 CysC Adenylylsulfate k 25.2 74 0.0016 30.6 3.3 30 57-86 24-55 (197)
293 PRK08181 transposase; Validate 25.2 61 0.0013 32.9 3.0 37 54-91 107-143 (269)
294 CHL00081 chlI Mg-protoporyphyr 25.2 67 0.0015 34.0 3.4 44 36-82 21-66 (350)
295 PRK14251 phosphate ABC transpo 25.1 69 0.0015 31.6 3.3 24 56-79 30-55 (251)
296 PRK14238 phosphate transporter 24.7 76 0.0016 31.9 3.6 24 56-79 50-75 (271)
297 TIGR03574 selen_PSTK L-seryl-t 24.6 94 0.002 30.7 4.2 30 59-88 2-33 (249)
298 PRK14262 phosphate ABC transpo 24.6 66 0.0014 31.7 3.1 23 57-79 30-54 (250)
299 PRK05541 adenylylsulfate kinas 24.4 1.5E+02 0.0034 27.2 5.4 32 55-86 6-39 (176)
300 PRK14242 phosphate transporter 24.2 83 0.0018 31.0 3.7 23 56-78 32-56 (253)
301 PRK04296 thymidine kinase; Pro 24.1 1.1E+02 0.0024 29.0 4.4 33 57-89 3-37 (190)
302 TIGR02640 gas_vesic_GvpN gas v 24.0 93 0.002 31.2 4.0 27 56-86 24-50 (262)
303 PRK06731 flhF flagellar biosyn 23.9 1.2E+02 0.0027 30.7 4.9 35 56-90 75-111 (270)
304 PRK14274 phosphate ABC transpo 23.8 86 0.0019 31.1 3.8 24 56-79 38-63 (259)
305 cd02026 PRK Phosphoribulokinas 23.6 54 0.0012 33.3 2.2 25 58-82 1-27 (273)
306 cd01131 PilT Pilus retraction 23.6 1E+02 0.0023 29.4 4.1 22 58-79 3-26 (198)
307 PRK14734 coaE dephospho-CoA ki 23.6 68 0.0015 30.8 2.8 24 57-84 2-27 (200)
308 COG1855 ATPase (PilT family) [ 23.3 1.3E+02 0.0028 33.1 5.0 36 56-91 263-300 (604)
309 TIGR00150 HI0065_YjeE ATPase, 23.3 1.8E+02 0.0038 26.3 5.3 57 36-98 4-62 (133)
310 PRK11248 tauB taurine transpor 23.2 66 0.0014 32.0 2.8 24 56-79 27-52 (255)
311 PF02492 cobW: CobW/HypB/UreG, 23.2 1.2E+02 0.0025 28.4 4.3 34 57-91 1-36 (178)
312 PRK14269 phosphate ABC transpo 23.1 70 0.0015 31.5 2.9 41 56-108 28-70 (246)
313 cd03259 ABC_Carb_Solutes_like 22.9 72 0.0016 30.5 2.9 25 55-79 25-51 (213)
314 cd03256 ABC_PhnC_transporter A 22.7 70 0.0015 31.2 2.8 38 56-108 27-66 (241)
315 cd03226 ABC_cobalt_CbiO_domain 22.7 68 0.0015 30.5 2.7 25 55-79 25-51 (205)
316 cd01130 VirB11-like_ATPase Typ 22.6 1.5E+02 0.0032 27.9 4.9 36 39-79 13-50 (186)
317 COG3265 GntK Gluconate kinase 22.6 47 0.001 30.9 1.4 19 60-79 2-20 (161)
318 PRK07429 phosphoribulokinase; 22.6 80 0.0017 33.1 3.3 27 55-81 7-35 (327)
319 PTZ00386 formyl tetrahydrofola 22.6 1.1E+02 0.0024 34.5 4.5 32 55-86 67-105 (625)
320 PRK11629 lolD lipoprotein tran 22.5 65 0.0014 31.4 2.5 38 56-108 35-74 (233)
321 cd03263 ABC_subfamily_A The AB 22.5 70 0.0015 30.7 2.7 38 56-108 28-67 (220)
322 TIGR01184 ntrCD nitrate transp 22.4 68 0.0015 31.3 2.6 38 56-108 11-50 (230)
323 COG1428 Deoxynucleoside kinase 22.3 86 0.0019 30.8 3.2 24 56-79 4-29 (216)
324 cd03289 ABCC_CFTR2 The CFTR su 22.2 84 0.0018 31.9 3.3 36 57-108 31-68 (275)
325 PRK14248 phosphate ABC transpo 22.2 94 0.002 31.1 3.7 24 56-79 47-72 (268)
326 KOG0054 Multidrug resistance-a 22.2 53 0.0011 40.9 2.1 53 40-109 1152-1206(1381)
327 PF02572 CobA_CobO_BtuR: ATP:c 22.1 1.1E+02 0.0025 28.9 3.9 30 58-87 5-36 (172)
328 PRK14275 phosphate ABC transpo 22.1 83 0.0018 32.0 3.3 23 56-78 65-89 (286)
329 PRK06547 hypothetical protein; 21.9 90 0.002 29.3 3.3 24 55-78 14-39 (172)
330 PRK10908 cell division protein 21.9 65 0.0014 31.1 2.4 39 55-108 27-67 (222)
331 PRK08939 primosomal protein Dn 21.8 1.4E+02 0.003 30.9 4.9 35 57-91 157-193 (306)
332 TIGR01166 cbiO cobalt transpor 21.7 73 0.0016 29.9 2.6 24 56-79 18-43 (190)
333 PRK10536 hypothetical protein; 21.5 1E+02 0.0022 31.3 3.7 36 57-92 75-113 (262)
334 PRK06278 cobyrinic acid a,c-di 21.4 1.1E+02 0.0025 33.7 4.3 27 55-81 237-266 (476)
335 KOG0447 Dynamin-like GTP bindi 21.4 1.3E+02 0.0029 33.7 4.7 41 37-77 285-331 (980)
336 PRK14241 phosphate transporter 21.4 78 0.0017 31.4 2.9 24 56-79 30-55 (258)
337 cd03260 ABC_PstB_phosphate_tra 21.2 96 0.0021 30.0 3.4 23 56-78 26-50 (227)
338 COG2274 SunT ABC-type bacterio 21.1 49 0.0011 38.4 1.5 91 57-162 500-608 (709)
339 TIGR00972 3a0107s01c2 phosphat 21.0 75 0.0016 31.2 2.7 44 55-108 26-71 (247)
340 PRK13540 cytochrome c biogenes 21.0 73 0.0016 30.2 2.5 24 55-78 26-51 (200)
341 COG3172 NadR Predicted ATPase/ 20.9 73 0.0016 30.1 2.3 25 56-80 8-34 (187)
342 PF03266 NTPase_1: NTPase; In 20.7 1.5E+02 0.0032 27.7 4.4 34 59-92 2-37 (168)
343 COG4088 Predicted nucleotide k 20.6 1.1E+02 0.0023 30.3 3.4 35 56-90 1-37 (261)
344 PRK11448 hsdR type I restricti 20.6 1.5E+02 0.0033 36.4 5.5 53 36-91 418-471 (1123)
345 PRK09183 transposase/IS protei 20.6 1.3E+02 0.0029 30.1 4.4 34 58-91 104-139 (259)
346 cd03258 ABC_MetN_methionine_tr 20.5 83 0.0018 30.6 2.8 38 56-108 31-70 (233)
347 PRK14244 phosphate ABC transpo 20.4 95 0.0021 30.6 3.2 24 56-79 31-56 (251)
348 TIGR03864 PQQ_ABC_ATP ABC tran 20.4 76 0.0016 31.0 2.5 25 55-79 26-52 (236)
349 PRK13648 cbiO cobalt transport 20.3 78 0.0017 31.7 2.6 39 55-108 34-74 (269)
350 KOG4300 Predicted methyltransf 20.2 3.2E+02 0.0069 27.1 6.5 83 98-203 35-119 (252)
351 PRK10247 putative ABC transpor 20.2 97 0.0021 30.1 3.2 23 56-78 33-57 (225)
352 PRK14730 coaE dephospho-CoA ki 20.2 93 0.002 29.8 3.0 22 57-78 2-25 (195)
353 PRK00081 coaE dephospho-CoA ki 20.2 87 0.0019 29.8 2.8 20 57-76 3-24 (194)
354 cd03252 ABCC_Hemolysin The ABC 20.1 87 0.0019 30.5 2.9 39 55-108 27-67 (237)
No 1
>PLN02881 tetrahydrofolylpolyglutamate synthase
Probab=100.00 E-value=6.3e-100 Score=818.71 Aligned_cols=524 Identities=73% Similarity=1.145 Sum_probs=422.7
Q ss_pred CCCCCCcccHHHHHHHHHhchhcccccCCCCCCCCHHHHHHHHHHcCCcccCCCCcEEEEcCCCchhHHHHHHHHHHHhC
Q 048728 2 AEGNKTVTAYEEALDALSSLITKRSRADKSNNGDRFELLSDYLKILDLDVAISQLKVIHVAGTKGKGSTCTFTESILRNC 81 (536)
Q Consensus 2 ~~~~~~~~~y~~a~~~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~p~~~l~vI~VTGTnGKTST~~ml~~IL~~~ 81 (536)
++..++.++|++|+++|+++++++.+....+.+++|++|+++|++||+..|..++++|||||||||||||+|+++||+++
T Consensus 7 ~~~~~~~~~y~~a~~~L~sl~~~~~~~~~~~~~~~L~rm~~~L~~LG~p~~~~~l~vIhVaGTnGKGSt~a~l~siL~~~ 86 (530)
T PLN02881 7 EDDAPTSDSYEEALDALSSLITKKSRADPSNPGDQFDLLFDYLKILELEEAISRLKVIHVAGTKGKGSTCTFTESILRNC 86 (530)
T ss_pred cccCccccCHHHHHHHHHhcccchhhccccccCCChHHHHHHHHHcCCCchhhcCCEEEEeCCCCHHHHHHHHHHHHHHC
Confidence 56778889999999999999998666555556789999999999999766668999999999999999999999999999
Q ss_pred CCCEEEEeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCCCHHHHHHHHHHHHHhhCCCcEEEEecc
Q 048728 82 GFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMPSYFRFLALLAFKIFTAEQIDVAILEVG 161 (536)
Q Consensus 82 G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p~~fe~lt~la~~~f~~~~~d~aVlEvg 161 (536)
|+|||+||||||.++||||+|||.+|+++.|.++||+||++++.......++|+|||++|+|||++|.++++|++|||||
T Consensus 87 G~rvGl~tSPhL~~~rERiring~~Is~e~f~~~f~~v~~~l~~~~~~~~~~pt~Fe~lTlla~~~F~~~~vD~aVlEvG 166 (530)
T PLN02881 87 GFRTGLFTSPHLIDVRERFRLDGVDISEEKFLRYFWWCWDRLKEKTTEDLPMPAYFRFLTLLAFKIFSAEQVDVAILEVG 166 (530)
T ss_pred CCCEEEECCCccCcceeEEEECCEecCHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEEEEEec
Confidence 99999999999999999999999999999999999999999998665566779999999999999999999999999999
Q ss_pred cCCcccccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHccccCCCceeccCCChHHHHHHHHHhhcCCCCEEEeCC
Q 048728 162 LGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKYGVPAFTVPQPEEAMRVLEENASKLDVPLQVVPP 241 (536)
Q Consensus 162 ~gg~~D~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k~~~~~v~~~~~~~~~~vl~~~a~~~~~~l~~~~~ 241 (536)
+||++|+||++.+|+++|||||+.||+++||+|+|+||++|++||+++.|+|+..++++++++++++|++.+++++.++.
T Consensus 167 lgGr~DaTnvi~~p~v~vITnIg~DH~~~LG~Tle~IA~~KagI~k~g~p~vt~~q~~ea~~vl~~~A~e~~a~l~~v~~ 246 (530)
T PLN02881 167 LGGRLDATNVVQKPVVCGITSLGYDHMEILGDTLGKIAGEKAGIFKPGVPAFTVPQPDEAMRVLEERASELGVPLQVVEP 246 (530)
T ss_pred CCCCchhhhccCCCCEEEEccccHHHHHhhcCCHHHHHHHHHHHHhcCCCEEEeCCChHHHHHHHHHHHHhCCcEEEecc
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCcccccceecCCCcHHHHHhHHHHHHHHHHHHHhccccccccCCCCCCChHHHHHHHhcCCCCCceeEEcCCCCCCCCC
Q 048728 242 LDASLLNGLKLGLEGEHQYMNAGLAVALSSTWLQRTSQLGINYLDTTSPLPEQFIQGLTMANLQGRAQIVPDRYTNSETS 321 (536)
Q Consensus 242 ~~~~~~~~~~l~l~G~hq~~Na~aAia~a~~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~~~~pGR~E~v~~~~~~~~~~ 321 (536)
.+...+..+.++|.|.||..|+++|++++..++++.|............+++.+.+||+++.||||||++..........
T Consensus 247 ~~~~~~~~~~l~L~G~~Q~~NaalAla~~~~~l~~~~~~~~~~~~~~~~l~~~i~~GL~~~~wpGR~e~v~~~~~~~~~~ 326 (530)
T PLN02881 247 LDSYGLSGLKLGLAGEHQYLNAGLAVALCSTWLQRTGHEEFEALLQAGTLPEQFIKGLSTASLQGRAQVVPDSYINSEDS 326 (530)
T ss_pred cccceecccCCCCCChhHHHhHHHHHHHHHHHHhhccccccccccccCCCHHHHHHHHHhCCCCceEEEeccccccccCC
Confidence 33212234678999999999999999999998765542111100001245678999999999999999996400000001
Q ss_pred CCcEEEEECCCCHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCcccCccccCCCcEEEEEecCCCCChhhh
Q 048728 322 GDLVFYLDGAHSPESMEICARWFSLAIKEENQQETFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFNCMSVRDPQLL 401 (536)
Q Consensus 322 ~~~~vilD~AHnp~si~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg~~~drd~~~~ 401 (536)
+++.||+||||||+|+++|.+||.+.++.....++...++..+.+ ..+. +...+..++|+||||++|||+..+
T Consensus 327 ~~~~~~LDGAHNp~s~~~l~~wf~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~ilvF~~~~dkD~~~l 399 (530)
T PLN02881 327 GDLVFYLDGAHSPESMEACARWFSSAIKGDEQSPGSGYGPHGGGG-KSED------TESNKISEQILLFNCMSVRDPQLL 399 (530)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHHHhcccccCCccccccccccc-cccc------ccccCCCCEEEEEcCCCCCCHHHH
Confidence 247899999999999999999999876542222222222211111 0000 111234579999999999999999
Q ss_pred hHHHHHHHHhcCCcccEEEEecCCcccccCCCCCCCCCcchhchhHHHHHHHHHHHhccCccccccccCCCCcccccccc
Q 048728 402 LPSLMKTCARHGVYFKKALFVPNASVYNKVGSHALPPTETQIDLSWQFALQRVWENLMLGDKAVEAKNTDNASEDVKDYT 481 (536)
Q Consensus 402 l~~l~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 481 (536)
++.|.+.|.+++..||++|||||.++|++.++. .+..++..+++||..+++.|++|..+....+ ....+++.+...
T Consensus 400 L~~L~~~~~~~~~~f~~aiF~~n~~~~~~~~~~-~~~~~~~~~l~~q~~l~~~W~~l~~~~~~~~---~~~~~~~~~~~~ 475 (530)
T PLN02881 400 LPPLANTCASNGVPFKKALFVPNISVYNKVGSG-LPVDDPQVDLSWQFTLQRVWESLIRGKAGAP---ADAVCEESASSG 475 (530)
T ss_pred HHHHHHHHHhcCCCCCeEEEcCCccccCCCccc-CCCcchhhhHHHHHHHHHHHHHhcccccccc---cccccccccccc
Confidence 999999998777899999999999888876655 3444556789999999999999974322111 011112222222
Q ss_pred ccccCCCCCceEeCCHHHHHHHHHHHhhhcCCCCceEEEeCchhhHHHHHHHhhC
Q 048728 482 ELSARSCENSAVFSSLPLAIKWLRDSVQQNQSLRFQVLVTGSLHLIGDVLKIVKK 536 (536)
Q Consensus 482 ~~~~~~~~~~~v~~si~~Ai~~~~~~~~~~~~~~~~VLvtGSl~LVG~vl~~l~~ 536 (536)
......+.++.|++|+++||+|+++++.+.+..+++|||||||||||+||++|+|
T Consensus 476 ~~~~~~~~~~~v~~si~~Ai~~~r~~~~~~~~~~~~vlVTGSlhLvG~~l~~l~~ 530 (530)
T PLN02881 476 LNDGKSDENSAVFPSLPLAIKWLRDCARENPSLRFQVLVTGSLHLVGDVLRLLKK 530 (530)
T ss_pred ccCCCCCCceeEecCHHHHHHHHHHHhhhCCCcceEEEEecchhhhhHHHHHhcC
Confidence 2223334578999999999999999988766556899999999999999999986
No 2
>KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism]
Probab=100.00 E-value=6.1e-93 Score=736.78 Aligned_cols=467 Identities=50% Similarity=0.814 Sum_probs=401.0
Q ss_pred CCCcccHHHHHHHHHhchhc------ccccCCCCCCCCHHHHHHHHHHcCCcccCCCCcEEEEcCCCchhHHHHHHHHHH
Q 048728 5 NKTVTAYEEALDALSSLITK------RSRADKSNNGDRFELLSDYLKILDLDVAISQLKVIHVAGTKGKGSTCTFTESIL 78 (536)
Q Consensus 5 ~~~~~~y~~a~~~l~~~~~~------~~~~~~~~~~~~l~~~~~~L~~Lg~~~p~~~l~vI~VTGTnGKTST~~ml~~IL 78 (536)
+...++|++|+++||+||++ .++.++.+...+|++|++||++||+..++.++++|||||||||||||+|+++||
T Consensus 15 ~~~~~~~~~~v~~lnsLqsn~~~i~~~~~~~~~~~~~~l~~m~~~L~~lg~p~d~~~l~iIHVAGTkGKGStcaF~~SIL 94 (496)
T KOG2525|consen 15 TISSKTYEDAVRYLNSLQSNAALIEKLRRQDDNPQGLTLPRMRKLLERLGNPEDQNSLNIIHVAGTKGKGSTCAFTESIL 94 (496)
T ss_pred cccchhHHHHHHHHHHHHhHHHhhhhhhhccCCccccCHHHHHHHHHHhCChhhhhheeEEEEecCCCCcchHHHHHHHH
Confidence 44567899999999999986 223334455679999999999999544499999999999999999999999999
Q ss_pred HhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCCCHHHHHHHHHHHHHhhCCCcEEEE
Q 048728 79 RNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMPSYFRFLALLAFKIFTAEQIDVAIL 158 (536)
Q Consensus 79 ~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p~~fe~lt~la~~~f~~~~~d~aVl 158 (536)
++.|+|+|+||||||+++||||+|||+|||++.|.++||+||+++++....+.++|+||++||++||++|.+++||+||+
T Consensus 95 r~~g~rtG~yTSPHLl~vrErIriNGqpIS~e~F~~~f~~v~~~lk~~~~~~~~~p~yF~fLT~lAF~~F~~enVdvaVi 174 (496)
T KOG2525|consen 95 RQQGLRTGFYTSPHLLSVRERIRINGQPISEEKFTKYFWEVYERLKSTKLKEVSMPTYFEFLTLLAFHVFVKENVDVAVI 174 (496)
T ss_pred HhcccccccccChhhcchhheEEECCEECCHHHHHHHHHHHHHHHHHhhccccCCCchhhhhHhhhheeeeecCCcEEEE
Confidence 99999999999999999999999999999999999999999999999888888999999999999999999999999999
Q ss_pred ecccCCcccccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHccccCCCceeccCCChHHHHHHHHHhhcCCCCEEE
Q 048728 159 EVGLGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKYGVPAFTVPQPEEAMRVLEENASKLDVPLQV 238 (536)
Q Consensus 159 Evg~gg~~D~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k~~~~~v~~~~~~~~~~vl~~~a~~~~~~l~~ 238 (536)
|||+||++|+||+|.+|.+|+||+||.||+++||+|+++|||+|+||||.+.|+++..++++++++++++|.+.++++++
T Consensus 175 EvGlGG~~DaTNvI~kpvvcgITslG~DH~~~LG~tL~eIA~eKAGIfK~gvpaft~~q~~e~~nvL~~ra~e~~~~L~~ 254 (496)
T KOG2525|consen 175 EVGLGGELDATNVIEKPVVCGITSLGLDHTSFLGNTLSEIAWEKAGIFKEGVPAFTVPQPPEALNVLKERASELGVPLFV 254 (496)
T ss_pred EeccccccccccccccceEEEEeecCCchHHHHhhHHHHHHHHhccccccCCceEEcCCcHHHHHHHHHHHHhcCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCcccccceecCCCcHHHHHhHHHHHHHHHHHHHhccccccc---cCCCCCCChHHHHHHHhcCCCCCceeEEcCCC
Q 048728 239 VPPLDASLLNGLKLGLEGEHQYMNAGLAVALSSTWLQRTSQLGIN---YLDTTSPLPEQFIQGLTMANLQGRAQIVPDRY 315 (536)
Q Consensus 239 ~~~~~~~~~~~~~l~l~G~hq~~Na~aAia~a~~ll~~~g~~~~~---~~~~~~~~~~~i~~gL~~~~~pGR~E~v~~~~ 315 (536)
+++.+........+.+.|.||..|+.+|+.++..|+...|..... .....+..++.+..||+++.||||+|++..+
T Consensus 255 v~p~~~~~ls~~~lgl~g~hq~~na~lA~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~GL~~~~wPGR~qil~~~- 333 (496)
T KOG2525|consen 255 VPPLEAYELSGVNLGLIGTHQWSNASLAVQLASEWLIQNGRVAEGVLDALQTSGLIPPAFLSGLASTDWPGRLQILEYG- 333 (496)
T ss_pred cCCchhhhhcCCcccccccchhhhhHHHHHHHHHHHHhcCcccccCCCccccccCCCHHHhcchhhccCCCceEEEecC-
Confidence 988655445556699999999999999999999997665421111 1111122567788899999999999999985
Q ss_pred CCCCCCCCcEEEEECCCCHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCcccCccccCCCc-EEEEEecCC
Q 048728 316 TNSETSGDLVFYLDGAHSPESMEICARWFSLAIKEENQQETFDFQPPNSSGSSNGLPQRQHDGKIRKNSA-QILLFNCMS 394 (536)
Q Consensus 316 ~~~~~~~~~~vilD~AHnp~si~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ilvfg~~~ 394 (536)
++..|++||||||+||++|.+||+++++.. ++.+ +|++|+|++
T Consensus 334 ------~~~~~llDGAHt~eSaea~~~w~~~~~~~~------------------------------~~~~~~illfn~t~ 377 (496)
T KOG2525|consen 334 ------RGVTWLLDGAHTKESAEACAKWFRKAVRGL------------------------------KKLTSLILLFNCTS 377 (496)
T ss_pred ------CCcEEEecCCCCHHHHHHHHHHHHHHhccC------------------------------CCccceEEEEEecC
Confidence 578999999999999999999999987662 2222 799999999
Q ss_pred CCChhhhhHHHHHHHHhcCCcccEEEEecCCcccccCCCCC---CCCCcchhchhHHHHHHHHHHHhccCccccccccCC
Q 048728 395 VRDPQLLLPSLMKTCARHGVYFKKALFVPNASVYNKVGSHA---LPPTETQIDLSWQFALQRVWENLMLGDKAVEAKNTD 471 (536)
Q Consensus 395 drd~~~~l~~l~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~q~~l~~~~~~l~~~~~~~~~~~~~ 471 (536)
+||+..+++.|.. +...+..|+.|+|+|+.+.+++.+... ++...+ ..+.||..++++|+++.+....
T Consensus 378 ~~d~~~Ll~~L~~-~~~~~~~F~~Vvf~Pni~~~~~~~~~d~~~~~~s~~-~~l~~q~~L~~~w~~l~~~~~~------- 448 (496)
T KOG2525|consen 378 DRDPPLLLPLLKP-DAVIGTRFSSVVFMPNITSSSPVGSADSISLNTSTE-EQLNWQNDLQSVWEELKESEGK------- 448 (496)
T ss_pred CcchHhHhHHhcc-ccccccccceEEecccccccCCccchhhhhccCCch-HHHHHhHHHHHHHHHHhhcCCC-------
Confidence 9999999888866 444556899999999998888876532 333322 4688999999999999763200
Q ss_pred CCccccccccccccCCCCCceEeCCHHHHHHHHHHHhhhcCCCCceEEEeCchhhHHHHHHHhhC
Q 048728 472 NASEDVKDYTELSARSCENSAVFSSLPLAIKWLRDSVQQNQSLRFQVLVTGSLHLIGDVLKIVKK 536 (536)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~v~~si~~Ai~~~~~~~~~~~~~~~~VLvtGSl~LVG~vl~~l~~ 536 (536)
....+.|+.|+..|++|++....+. ..+.|||||||||+|+.+|++
T Consensus 449 ---------------~~~~~~V~~sL~~a~~~Lr~~~~~s----~~~~V~gslhlvg~vl~~l~~ 494 (496)
T KOG2525|consen 449 ---------------TEDPSIVFGSLYLAYELLRDDQHLS----PRIEVLGSLHLVGGVLVLLDR 494 (496)
T ss_pred ---------------ceeeeeEeccHHHHHHHHHhcCCCC----CeEEEEEEEEEechHhhhhhc
Confidence 0124679999999999999763322 278899999999999999864
No 3
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]
Probab=100.00 E-value=1.2e-78 Score=639.59 Aligned_cols=404 Identities=36% Similarity=0.519 Sum_probs=330.8
Q ss_pred ccHHHHHHHHHhchhcccccCCCCCCCCHHHHHHHHHHcCCcccCCCCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 9 TAYEEALDALSSLITKRSRADKSNNGDRFELLSDYLKILDLDVAISQLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 9 ~~y~~a~~~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~p~~~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
++|+++.+||..+..... ..+.+.+|+||.++|++|| +|++.+++|||+|||||||||+||++||+++||+||+|
T Consensus 2 ~~~~~~~~wl~~l~~~~~---~~~i~~gL~Ri~~ll~~LG--nP~~~~~vIhVaGTNGKGSt~afl~siL~~aG~~VG~y 76 (427)
T COG0285 2 MSLQELAEWLHYLEQLHP---KPGIDLGLERISRLLERLG--NPQKSPPVIHVAGTNGKGSTCAFLESILREAGYKVGVY 76 (427)
T ss_pred cchHHHHHHHHHHHhcCC---CCcccCChHHHHHHHHHcC--CccccCCeEEEeCCCCchhHHHHHHHHHHHcCCCceEE
Confidence 578888899988765542 2236778999999999999 89999999999999999999999999999999999999
Q ss_pred eCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCC-CCCCCHHHHHHHHHHHHHhhCCCcEEEEecccCCccc
Q 048728 89 TSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATED-IPMPSYFRFLALLAFKIFTAEQIDVAILEVGLGGRFD 167 (536)
Q Consensus 89 tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~-~~~p~~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D 167 (536)
|||||.+|||||+|||++|+++++.++|. +++...... ...|+|||++|+|||.+|.+.++|++|||||+|||+|
T Consensus 77 TSPHL~~~~ERI~ing~~Isd~~~~~~~~----~ve~~~~~~~~~~~T~FE~~Ta~Af~~F~~~~vD~aIlEVGLGGRlD 152 (427)
T COG0285 77 TSPHLLSFNERIRINGEPISDEELAAAFE----RVEEAAGSLDLISLTYFEVLTAMAFLYFAEAKVDVAILEVGLGGRLD 152 (427)
T ss_pred CCCccCccceEEEECCEECCHHHHHHHHH----HHHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEEEEecccccccc
Confidence 99999999999999999999999999985 444433322 3569999999999999999999999999999999999
Q ss_pred ccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHccccCCCceeccC-CChHHHHHHHHHhhcCCCCEEEeCC-CC--
Q 048728 168 ATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKYGVPAFTVP-QPEEAMRVLEENASKLDVPLQVVPP-LD-- 243 (536)
Q Consensus 168 ~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k~~~~~v~~~-~~~~~~~vl~~~a~~~~~~l~~~~~-~~-- 243 (536)
+||++. |+++|||||+.||+++||+|+|+||++|+||||++.|+|+.. +.|+++.++++.+.+.++++...+. +.
T Consensus 153 ATNVi~-p~vsvIT~I~lDH~~~LG~tie~IA~EKAGI~k~g~P~v~~~~~~p~a~~vi~~~a~~~~~~~~~~~~~~~~~ 231 (427)
T COG0285 153 ATNVIE-PDVSVITSIGLDHTAFLGDTLESIAREKAGIIKAGKPAVIGEQQPPEALNVIAERAEELGAPLFVLGPDFQVL 231 (427)
T ss_pred chhccC-CceEEEcccChhHHHHhCCcHHHHHHHhhhhccCCCcEEECCCCCHHHHHHHHHHHHhcCCCeeecccchhhc
Confidence 999995 999999999999999999999999999999999999999987 5678999999999999999887642 11
Q ss_pred -------cc---cccceecCCCcHH-HHHhHHHHHHHHHHHHHhccccccccCCCCCCChHHHHHHHhcCCCCCceeEEc
Q 048728 244 -------AS---LLNGLKLGLEGEH-QYMNAGLAVALSSTWLQRTSQLGINYLDTTSPLPEQFIQGLTMANLQGRAQIVP 312 (536)
Q Consensus 244 -------~~---~~~~~~l~l~G~h-q~~Na~aAia~a~~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~~~~pGR~E~v~ 312 (536)
.. ....+.+++.|.| |+.||++|++++..+ +. .++.+.|.+||+++.||||||++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~lp~l~~~~Q~~NAa~Ai~al~~l----~~---------~i~~~~i~~gl~~~~wpGR~e~l~ 298 (427)
T COG0285 232 EEGNGFSFQGGGGLLDLPLPLLGGHHQIENAALAIAALEAL----GK---------EISEEAIRKGLANVDWPGRLERLS 298 (427)
T ss_pred cccceEEEecCCeeeeeccccccchhHHHHHHHHHHHHHHh----cc---------cCCHHHHHHHHHhCcCCceEEEec
Confidence 11 1235678888888 999999999999988 31 146789999999999999999998
Q ss_pred CCCCCCCCCCCcEEEEECCCCHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCcccCccccCCCc-EEEEEe
Q 048728 313 DRYTNSETSGDLVFYLDGAHSPESMEICARWFSLAIKEENQQETFDFQPPNSSGSSNGLPQRQHDGKIRKNSA-QILLFN 391 (536)
Q Consensus 313 ~~~~~~~~~~~~~vilD~AHnp~si~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ilvfg 391 (536)
.. +.+++|+||||+|+.++.++|++.. +..+ +++|||
T Consensus 299 ~~---------p~i~lDgAHNp~aa~~La~~l~~~~---------------------------------~~~~~~~~v~g 336 (427)
T COG0285 299 EN---------PLILLDGAHNPHAARALAETLKTLF---------------------------------NDRPRLTLVFG 336 (427)
T ss_pred CC---------CeEEEECCCCHHHHHHHHHHHHHHh---------------------------------ccCCceEEEEE
Confidence 75 8999999999999999999777642 3333 899999
Q ss_pred cCCCCChhhhhHHHHHHHHhcCCcccEEEEecCCcccccCCCCCCCCCcchhchhHHHHHHHHHHHhccCccccccccCC
Q 048728 392 CMSVRDPQLLLPSLMKTCARHGVYFKKALFVPNASVYNKVGSHALPPTETQIDLSWQFALQRVWENLMLGDKAVEAKNTD 471 (536)
Q Consensus 392 ~~~drd~~~~l~~l~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~~~~~l~~~~~~~~~~~~~ 471 (536)
+..|||...++..|... -++++++|.. .+++ .+ + ..+.+......
T Consensus 337 ~l~dKd~~~~l~~L~~~-------~~~~~~~~~~---~~ra---~~--~--------~~l~~~~~~~~------------ 381 (427)
T COG0285 337 MLKDKDIAGMLAALLPI-------VDEIYTTPLP---WPRA---LD--A--------EELLAFAGERG------------ 381 (427)
T ss_pred eecCCCHHHHHHHhhcc-------CcEEEEccCC---Cccc---CC--H--------HHHHHHHHhhc------------
Confidence 99999999998888642 1344444432 2222 11 1 11222211111
Q ss_pred CCccccccccccccCCCCCceEeCCHHHHHHHHHHHhhhcCCCCceEEEeCchhhHHHHHHHhh
Q 048728 472 NASEDVKDYTELSARSCENSAVFSSLPLAIKWLRDSVQQNQSLRFQVLVTGSLHLIGDVLKIVK 535 (536)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~v~~si~~Ai~~~~~~~~~~~~~~~~VLvtGSl~LVG~vl~~l~ 535 (536)
... .+++.+|++.+.+.... ...||||||||+||+|++.+.
T Consensus 382 ------------------~~~-~~~~~~a~~~~~~~~~~----~~~ilV~GSly~~~ev~~~~~ 422 (427)
T COG0285 382 ------------------GVE-LDDVAEALELALEKADE----DDLVLVTGSLYLAGEVLELLK 422 (427)
T ss_pred ------------------CCc-cccHHHHHHHHHHhcCC----CCeEEEEecHHHHHHHHHHhh
Confidence 011 67889999988765532 347999999999999999885
No 4
>PLN02913 dihydrofolate synthetase
Probab=100.00 E-value=3.8e-76 Score=642.06 Aligned_cols=443 Identities=27% Similarity=0.353 Sum_probs=340.3
Q ss_pred ccHHHHHHHHHhchhcccccCC--CCCC----CCHHHHHHHHHHcCCcccCCCCcEEEEcCCCchhHHHHHHHHHHHhCC
Q 048728 9 TAYEEALDALSSLITKRSRADK--SNNG----DRFELLSDYLKILDLDVAISQLKVIHVAGTKGKGSTCTFTESILRNCG 82 (536)
Q Consensus 9 ~~y~~a~~~l~~~~~~~~~~~~--~~~~----~~l~~~~~~L~~Lg~~~p~~~l~vI~VTGTnGKTST~~ml~~IL~~~G 82 (536)
.+|+++++||.++.+.+..+.+ -.++ ++|+||+++|++|| +|+.++++|||||||||||||+||++||+++|
T Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gL~r~~~ll~~LG--~P~~~~~vIhVaGTNGKGSt~a~l~~iL~~aG 101 (510)
T PLN02913 24 PELGDFLRYLDSLKNYEKSGVPKDAGTDSDDGFDLGRMRRLMDRLG--NPHSKFKAVHVAGTKGKGSTAAFLSNILRAQG 101 (510)
T ss_pred cCHHHHHHHHHhhccccccCCccccccccccCCCHHHHHHHHHHcC--CchhhCcEEEEeCCCchHHHHHHHHHHHHhcC
Confidence 5799999999999876422211 1234 79999999999999 89989999999999999999999999999999
Q ss_pred CCEEEEeCCccccccceeeeC--CeecCHHHHHHHHHHHHHhhhhhhcCCCCCCCHHHHHHHHHHHHHhhCCCcEEEEec
Q 048728 83 FRTGLFTSPHLIDVRERFRLD--GDDISEDKFLAYFWWCYDRLKEKATEDIPMPSYFRFLALLAFKIFTAEQIDVAILEV 160 (536)
Q Consensus 83 ~k~g~~tSphl~~~~Eri~in--G~~is~~~f~~~~~~v~~~l~~~~~~~~~~p~~fe~lt~la~~~f~~~~~d~aVlEv 160 (536)
|+||+||||||.++||||+|| |++|+++.|.++|.+|+..+++........|+|||++|++||.+|.+.++|++||||
T Consensus 102 ~~vG~fTSPHl~~~~ERi~in~~g~~is~~~~~~~~~~v~~~~~~~~~~~~~~~T~FE~~T~~A~~~F~~~~vD~aVlEv 181 (510)
T PLN02913 102 YSVGCYTSPHLRSIRERISVGKLGKPVSTNTLNDLFHGIKPILDEAIQLENGSLTHFEVLTALAFKLFAQENVDIAVIEA 181 (510)
T ss_pred CCeEEECCCCCceeceEEEECCCCCcCCHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhCCCCEEEEEe
Confidence 999999999999999999999 999999999999999988776543222235999999999999999999999999999
Q ss_pred ccCCcccccccccC--CcEEEEcCCCchhHhhhCCCHHHHHHHHHccccCCCceeccC-CChHHHHHHHHHhhcCCCCEE
Q 048728 161 GLGGRFDATNVVQK--PVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKYGVPAFTVP-QPEEAMRVLEENASKLDVPLQ 237 (536)
Q Consensus 161 g~gg~~D~tn~i~~--P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k~~~~~v~~~-~~~~~~~vl~~~a~~~~~~l~ 237 (536)
|+||++|+||++.. |+++|||||+.||+++||+|+|+||++|+|||+++.|+|++. +.+++..++.+.|++.+++++
T Consensus 182 GlGGrlDaTNvi~~~~p~vsVITnIg~DH~~~LG~Tle~IA~eKagIik~g~pvV~~~~~~~~~~~vi~~~a~~~~a~l~ 261 (510)
T PLN02913 182 GLGGARDATNVIDSSGLAASVITTIGEEHLAALGGSLESIALAKSGIIKQGRPVVLGGPFLPHIESILRDKASSMNSPVV 261 (510)
T ss_pred cCCCCcccccccCCCCCcEEEEccccHHHHhhhcccHHHHHHHHhhhccCCCCEEECCCCCHHHHHHHHHHHHHhCCCEE
Confidence 99999999999953 599999999999999999999999999999999999999975 566677778788888888876
Q ss_pred EeC-C-CC---------cc---c-----------------ccceecCCCcHHHHHhHHHHHHHHHHHHHhccccccccCC
Q 048728 238 VVP-P-LD---------AS---L-----------------LNGLKLGLEGEHQYMNAGLAVALSSTWLQRTSQLGINYLD 286 (536)
Q Consensus 238 ~~~-~-~~---------~~---~-----------------~~~~~l~l~G~hq~~Na~aAia~a~~ll~~~g~~~~~~~~ 286 (536)
.+. . ++ .. . ...+.++|.|.||+.|+++|++++..+ .+.+.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~L~G~hq~~Naa~Alaa~~~L-~~~~~------- 333 (510)
T PLN02913 262 SASDPGVRSSIKGIITDNGKPCQSCDIVIRVEKDDPLFIELSDVNLRMLGSHQLQNAVTAACAALCL-RDQGW------- 333 (510)
T ss_pred EeccccccceeecccccCCceeEEeccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHH-HhcCC-------
Confidence 541 1 00 00 0 113567899999999999999999876 21120
Q ss_pred CCCCChHHHHHHHhcCCCCCceeEEcCCCCCCCCCCCcEEEEECCCCHHHHHHHHHHHHHHHHhhccccccCCCCCCCCC
Q 048728 287 TTSPLPEQFIQGLTMANLQGRAQIVPDRYTNSETSGDLVFYLDGAHSPESMEICARWFSLAIKEENQQETFDFQPPNSSG 366 (536)
Q Consensus 287 ~~~~~~~~i~~gL~~~~~pGR~E~v~~~~~~~~~~~~~~vilD~AHnp~si~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (536)
.++.+.|.+||+++.||||||++..........+++.||+||||||+|+++++++|.+.
T Consensus 334 --~i~~~~I~~gL~~~~~pGR~E~i~~~~~~~~~~~~~~vIlDgAHNp~s~~al~~~L~~~------------------- 392 (510)
T PLN02913 334 --RISDASIRAGLENTNLLGRSQFLTSKEAEVLGLPGATVLLDGAHTKESAKALVDTIKTA------------------- 392 (510)
T ss_pred --CCCHHHHHHHHHhCCCCCceEEeeccccccccCCCCEEEEECCCCHHHHHHHHHHHHHh-------------------
Confidence 25678899999999999999998631000000024689999999999999999966542
Q ss_pred CCCCCCCcccCccccCCCcEEEEEecCCCCChhhhhHHHHHHHHhcCCcccEEEEecCCccc-ccCCCCCCCCCcchhch
Q 048728 367 SSNGLPQRQHDGKIRKNSAQILLFNCMSVRDPQLLLPSLMKTCARHGVYFKKALFVPNASVY-NKVGSHALPPTETQIDL 445 (536)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~ilvfg~~~drd~~~~l~~l~~~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~~~~~~~~~~ 445 (536)
++.+++++|||+++|||...+++.|... ..+|.+++++..... ++|+ .+
T Consensus 393 --------------~~~~ki~~V~gml~DKd~~~~l~~l~~~-----~~~d~v~~~~~~~~~~~~r~---~~-------- 442 (510)
T PLN02913 393 --------------FPEARLALVVAMASDKDHLAFASEFLSG-----LKPEAVFLTEADIAGGKSRS---TS-------- 442 (510)
T ss_pred --------------cCCCCEEEEEEccCCCCHHHHHHHHhcc-----cCCCEEEEEcCCCCCCCCCC---CC--------
Confidence 2345789999999999999887755321 147899888642100 1222 11
Q ss_pred hHHHHHHHHHHHhccCccccccccCCCCccccccccccccCCCCCceEeCCHHHHHHHHHHHhhhcCCCCceEEEeCchh
Q 048728 446 SWQFALQRVWENLMLGDKAVEAKNTDNASEDVKDYTELSARSCENSAVFSSLPLAIKWLRDSVQQNQSLRFQVLVTGSLH 525 (536)
Q Consensus 446 ~~q~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~Ai~~~~~~~~~~~~~~~~VLvtGSl~ 525 (536)
. +.+.+.|.+....... ......++.+++++.+|++.+++.+... ..+.||||||||
T Consensus 443 -~-~~l~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~v~v~GSly 499 (510)
T PLN02913 443 -A-SALKEAWIKAAPELGI-------------------ETLLAENNSLLKSLVDASAILRKARTLD--PSSVVCVTGSLH 499 (510)
T ss_pred -H-HHHHHHHHHhccccCc-------------------eeeccccccccCCHHHHHHHHHHhcccC--CCCEEEEeCcHH
Confidence 1 2345556543220000 0000123456899999999987654211 224799999999
Q ss_pred hHHHHHHHhh
Q 048728 526 LIGDVLKIVK 535 (536)
Q Consensus 526 LVG~vl~~l~ 535 (536)
|||+|++.|+
T Consensus 500 lv~~v~~~~~ 509 (510)
T PLN02913 500 IVSAVLASLQ 509 (510)
T ss_pred HHHHHHHHhc
Confidence 9999999886
No 5
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=100.00 E-value=4.8e-73 Score=602.78 Aligned_cols=382 Identities=40% Similarity=0.581 Sum_probs=309.1
Q ss_pred HHHHHHHHHHcCCcccCCCCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHH
Q 048728 37 FELLSDYLKILDLDVAISQLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYF 116 (536)
Q Consensus 37 l~~~~~~L~~Lg~~~p~~~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~ 116 (536)
|+||+++|++|| +|+.++++|||||||||||||+||++||+++|+|||+|||||+.+++|||+|||.+++++.|.+++
T Consensus 1 l~r~~~~l~~lg--~p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~g~~vg~~tSphl~~~~eri~i~g~~i~~~~~~~~~ 78 (397)
T TIGR01499 1 LERMKKLLEALG--NPQDLYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLVSFNERIRINGEPISDEELAQAF 78 (397)
T ss_pred ChHHHHHHHHcC--CcHhhCCEEEEeCCCChHHHHHHHHHHHHHcCCCeeEEeCCCcCccceEEEECCEECCHHHHHHHH
Confidence 689999999999 788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhcCCCCCCCHHHHHHHHHHHHHhhCCCcEEEEecccCCcccccccccCCcEEEEcCCCchhHhhhCCCHH
Q 048728 117 WWCYDRLKEKATEDIPMPSYFRFLALLAFKIFTAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLG 196 (536)
Q Consensus 117 ~~v~~~l~~~~~~~~~~p~~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D~tn~i~~P~vaVITnI~~DHld~lG~tle 196 (536)
.+|+...+... ..|++||++|++||.+|.+.++|++|||||+|||+|+||++ +|+++|||||++||+++||+|+|
T Consensus 79 ~~v~~~~~~~~----~~~~~fe~~t~~A~~~f~~~~~d~~VlEvGlggrld~tn~i-~p~vaViTnI~~DHl~~lG~t~e 153 (397)
T TIGR01499 79 EQVRPILEKLS----QQPTYFELLTLLAFLYFAQAQVDVAVLEVGLGGRLDATNVI-EPLVSVITSIGLDHTEILGDTLE 153 (397)
T ss_pred HHHHHHHHhcc----CCCCHHHHHHHHHHHHHHHCCCCEEEEeecCCCCccccccc-CCCeEEEccccHHHHHHhCccHH
Confidence 88887664321 25999999999999999999999999999999999999999 69999999999999999999999
Q ss_pred HHHHHHHccccCCCceeccCCChHHHHHHHHHhhcCCCCEEEeCC-C----------Ccc----cccceecCCCcHHHHH
Q 048728 197 EIAGEKAGIFKYGVPAFTVPQPEEAMRVLEENASKLDVPLQVVPP-L----------DAS----LLNGLKLGLEGEHQYM 261 (536)
Q Consensus 197 ~ia~~Ka~I~k~~~~~v~~~~~~~~~~vl~~~a~~~~~~l~~~~~-~----------~~~----~~~~~~l~l~G~hq~~ 261 (536)
+|+++|++||+++.++|++.|++.+..++.+.+.+.+++++.++. + ... ....+.++++|.||++
T Consensus 154 ~ia~~Ka~I~k~~~~~v~~~d~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~ 233 (397)
T TIGR01499 154 EIAWEKAGIIKEGVPIVTGPQEPEALNVLKKKAQEKGAPLFVVGRDFNYSETDENYLSFSGANLFLEPLALSLLGDHQAE 233 (397)
T ss_pred HHHHHHhCccCCCCCEEEcCCChHHHHHHHHHHHHcCCCEEEeccceeecccccceEEeecccccccccCCCCCCHHHHH
Confidence 999999999999999999999888877777767666666544321 0 000 0113567899999999
Q ss_pred hHHHHHHHHHHHHHhccccccccCCCCCCChHHHHHHHhcCCCCCceeEEcCCCCCCCCCCCcEEEEECCCCHHHHHHHH
Q 048728 262 NAGLAVALSSTWLQRTSQLGINYLDTTSPLPEQFIQGLTMANLQGRAQIVPDRYTNSETSGDLVFYLDGAHSPESMEICA 341 (536)
Q Consensus 262 Na~aAia~a~~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~~~~pGR~E~v~~~~~~~~~~~~~~vilD~AHnp~si~~~l 341 (536)
|+++|++++..+ |... ..++.+.|.++|+++.||||||++... ++.+|+||||||+|+++++
T Consensus 234 N~~~Aiaa~~~l----g~~~------~~i~~~~i~~~L~~~~~pGR~e~i~~~--------~~~viiD~AHNp~a~~~~l 295 (397)
T TIGR01499 234 NAALALAALEVL----GKQR------PKLSEEAIRKGLANTIWPGRLEILSED--------NPNILLDGAHNPHSAEALA 295 (397)
T ss_pred HHHHHHHHHHHH----Hhcc------CCCCHHHHHHHHHhCCCCceEEEEecC--------CCEEEEECCCCHHHHHHHH
Confidence 999999999887 3100 013568899999999999999999743 4789999999999999999
Q ss_pred HHHHHHHHhhccccccCCCCCCCCCCCCCCCCcccCccccCCCcEEEEEecCCCCChhhhhHHHHHHHHhcCCcccEEEE
Q 048728 342 RWFSLAIKEENQQETFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFNCMSVRDPQLLLPSLMKTCARHGVYFKKALF 421 (536)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg~~~drd~~~~l~~l~~~~~~~~~~~d~~i~ 421 (536)
++|+.. ++.+++++||||++|||+.++++.|.+.+. .| +++
T Consensus 296 ~~l~~~---------------------------------~~~~~i~~V~G~~~dkd~~~~~~~l~~~~~-----~d-~~~ 336 (397)
T TIGR01499 296 EWFKKR---------------------------------FNGRPIILLFGALADKDAAAMLAPLKPVVD-----KE-VFV 336 (397)
T ss_pred HHHHHh---------------------------------cCCCCeEEEEEeeCCCCHHHHHHHHhhccC-----cE-EEE
Confidence 977542 234578899999999999999887765331 13 555
Q ss_pred ecCCcccccCCCCCCCCCcchhchhHHHHHHHHHHHhccCccccccccCCCCccccccccccccCCCCCceEeCCHHHHH
Q 048728 422 VPNASVYNKVGSHALPPTETQIDLSWQFALQRVWENLMLGDKAVEAKNTDNASEDVKDYTELSARSCENSAVFSSLPLAI 501 (536)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~Ai 501 (536)
++.. ++|+ .++. ++.+.+..+ .+.+++++.+||
T Consensus 337 ~~~~---~~r~-----~~~~-----------~i~~~~~~~----------------------------~~~~~~~~~~ai 369 (397)
T TIGR01499 337 TPFD---YPRA-----DDAA-----------DLAALAETF----------------------------GKETVEDWREAL 369 (397)
T ss_pred ECCC---CCCC-----CCHH-----------HHHHHHHHc----------------------------CceecCCHHHHH
Confidence 4432 3443 2221 111111110 135688999999
Q ss_pred HHHHHHhhhcCCCCceEEEeCchhhHHHHHHHh
Q 048728 502 KWLRDSVQQNQSLRFQVLVTGSLHLIGDVLKIV 534 (536)
Q Consensus 502 ~~~~~~~~~~~~~~~~VLvtGSl~LVG~vl~~l 534 (536)
+.+. .+++ ++.|||||||||||++++.+
T Consensus 370 ~~a~-~~~~----~d~vlv~GSlyl~~~~~~~~ 397 (397)
T TIGR01499 370 ALAL-NASA----EDDILVTGSLYLVGEVRKLL 397 (397)
T ss_pred HHHH-hCCC----CCEEEEEccHHHHHHHHHhC
Confidence 9887 3332 34899999999999998753
No 6
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=100.00 E-value=1.2e-68 Score=572.09 Aligned_cols=393 Identities=30% Similarity=0.364 Sum_probs=311.4
Q ss_pred ccHHHHHHHHHhchhcccccCCCCCCCCHHHHHHHHHHcCCcccCCCCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 9 TAYEEALDALSSLITKRSRADKSNNGDRFELLSDYLKILDLDVAISQLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 9 ~~y~~a~~~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~p~~~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
++|+++++||.++..++ .+++|+||+++|++|| +|+.++++|||||||||||||+||++||+++|+|||+|
T Consensus 11 ~~~~~~~~~l~~~~~~~-------~~~~l~~~~~ll~~lg--~p~~~~~~I~VtGTNGKgSt~~~l~~iL~~~G~~vG~~ 81 (416)
T PRK10846 11 SPLASWLSYLENLHSKT-------IDLGLERVSQVAARLD--LLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYRVGVY 81 (416)
T ss_pred HHHHHHHHHHHhccccC-------CCCChHHHHHHHHHhC--CCccCCCEEEEECCCChHHHHHHHHHHHHHcCCCceEE
Confidence 46889999998876543 4679999999999999 88889999999999999999999999999999999999
Q ss_pred eCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCCCHHHHHHHHHHHHHhhCCCcEEEEecccCCcccc
Q 048728 89 TSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMPSYFRFLALLAFKIFTAEQIDVAILEVGLGGRFDA 168 (536)
Q Consensus 89 tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p~~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D~ 168 (536)
|||||.+++|||+|||++++++.|...+.+|...... ..|++||++|++||.+|.+.++|++|+|+|+||++|+
T Consensus 82 tSphl~~~~eri~i~g~~i~~~~~~~~~~~~~~~~~~------~~~t~fe~~t~~a~~~f~~~~vd~~VlEvglggrld~ 155 (416)
T PRK10846 82 SSPHLVRYTERVRIQGQELPESAHTASFAEIEAARGD------ISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDA 155 (416)
T ss_pred CCCCCCCcceEEEECCEECCHHHHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHHHHcCCCEEEEEecCCCCchh
Confidence 9999999999999999999999999988776543321 2489999999999999999999999999999999999
Q ss_pred cccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHccccCCCceeccCCChHHHHHHHHHhhcCCCCEEEeCC-----CC
Q 048728 169 TNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKYGVPAFTVPQPEEAMRVLEENASKLDVPLQVVPP-----LD 243 (536)
Q Consensus 169 tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k~~~~~v~~~~~~~~~~vl~~~a~~~~~~l~~~~~-----~~ 243 (536)
||++ +|+++|||||++||+|+||+|+|+|+++|++||+.+.++|++.++. ..++...+.+.+++++.... ..
T Consensus 156 tn~i-~p~vaviTnI~~DHld~lG~t~e~ia~~Ka~Iik~~~~~V~~~~d~--~~~~~~~a~~~~~~~~~~~~~~~~~~~ 232 (416)
T PRK10846 156 TNIV-DADVAVVTSIALDHTDWLGPDRESIGREKAGIFRAEKPAVVGEPDM--PSTIADVAQEKGALLQRRGVDWNYSVT 232 (416)
T ss_pred hhcc-CCCEEEECCccHHHHHHhcCCHHHHHHHHHhhhcCCCeEEECCccH--hHHHHHHHHHhCCcEEEecceeeeecc
Confidence 9999 6999999999999999999999999999999999999988876542 23344556556666542211 00
Q ss_pred ccc--c-----cceecCCCcHHHHHhHHHHHHHHHHHHHhccccccccCCCCCCChHHHHHHHhcCCCCCceeEEcCCCC
Q 048728 244 ASL--L-----NGLKLGLEGEHQYMNAGLAVALSSTWLQRTSQLGINYLDTTSPLPEQFIQGLTMANLQGRAQIVPDRYT 316 (536)
Q Consensus 244 ~~~--~-----~~~~l~l~G~hq~~Na~aAia~a~~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~~~~pGR~E~v~~~~~ 316 (536)
... + ....++++ .||++|+++|++++..+ +. +++.+.|.+||+++.||||||++...
T Consensus 233 ~~~~~~~~~~~~~~~~~l~-~~~~~N~~~Aia~~~~~----~~---------~i~~~~i~~~L~~~~~~gR~e~~~~~-- 296 (416)
T PRK10846 233 DHDWAFSDGDGTLENLPLP-NVPLPNAATALAALRAS----GL---------EVSEQAIRDGIASAILPGRFQIVSES-- 296 (416)
T ss_pred CceEEEecCccccccCCcc-chHHHHHHHHHHHHHHc----CC---------CCCHHHHHHHHHhCCCCceEEEEcCC--
Confidence 000 0 01124555 57999999999998765 20 26678999999999999999999754
Q ss_pred CCCCCCCcEEEEECCCCHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCcccCccccCCCcEEEEEecCCCC
Q 048728 317 NSETSGDLVFYLDGAHSPESMEICARWFSLAIKEENQQETFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFNCMSVR 396 (536)
Q Consensus 317 ~~~~~~~~~vilD~AHnp~si~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg~~~dr 396 (536)
+.+|+||||||+|++++++.+++. .+++++++|||+++||
T Consensus 297 -------~~iI~D~AHNp~a~~~l~~~L~~~---------------------------------~~~~~ii~Vfg~~gdk 336 (416)
T PRK10846 297 -------PRVILDVAHNPHAAEYLTGRLKAL---------------------------------PKNGRVLAVIGMLHDK 336 (416)
T ss_pred -------CcEEEECCCCHHHHHHHHHHHHHh---------------------------------cCCCCEEEEEEeeCCC
Confidence 569999999999999998844431 1245889999999999
Q ss_pred ChhhhhHHHHHHHHhcCCcccEEEEecCCcccccCCCCCCCCCcchhchhHHHHHHHHHHHhccCccccccccCCCCccc
Q 048728 397 DPQLLLPSLMKTCARHGVYFKKALFVPNASVYNKVGSHALPPTETQIDLSWQFALQRVWENLMLGDKAVEAKNTDNASED 476 (536)
Q Consensus 397 d~~~~l~~l~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 476 (536)
|...++..|.+ .+|.+++++.. ++++ .++ +.+.+. + .
T Consensus 337 d~~~~l~~L~~-------~~d~viv~~~~---~~r~-----~~~--------~~l~~~---~-~---------------- 373 (416)
T PRK10846 337 DIAGTLACLKS-------VVDDWYCAPLE---GPRG-----ATA--------EQLAEH---L-G---------------- 373 (416)
T ss_pred CHHHHHHHHhh-------hCCEEEEECCC---CCCC-----CCH--------HHHHHH---h-h----------------
Confidence 99987766643 35777777542 3333 111 112211 1 1
Q ss_pred cccccccccCCCCCceEeCCHHHHHHHHHHHhhhcCCCCceEEEeCchhhHHHHHHHhh
Q 048728 477 VKDYTELSARSCENSAVFSSLPLAIKWLRDSVQQNQSLRFQVLVTGSLHLIGDVLKIVK 535 (536)
Q Consensus 477 ~~~~~~~~~~~~~~~~v~~si~~Ai~~~~~~~~~~~~~~~~VLvtGSl~LVG~vl~~l~ 535 (536)
...+++++.+|++++++.++++ +.||||||||+||++++.++
T Consensus 374 -------------~~~~~~~~~~Ai~~a~~~a~~g----D~VLi~GS~~~~~~~~~~~~ 415 (416)
T PRK10846 374 -------------NGKSFDSVAQAWDAAMADAKPE----DTVLVCGSFHTVAHVMEVID 415 (416)
T ss_pred -------------hCcccCCHHHHHHHHHHhcCCC----CEEEEECcHHHHHHHHHhhc
Confidence 1235689999999998766543 48999999999999998875
No 7
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=100.00 E-value=8.4e-47 Score=408.73 Aligned_cols=343 Identities=20% Similarity=0.214 Sum_probs=250.1
Q ss_pred CHHHHHHHHHHcC---CcccCCCCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHH
Q 048728 36 RFELLSDYLKILD---LDVAISQLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKF 112 (536)
Q Consensus 36 ~l~~~~~~L~~Lg---~~~p~~~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f 112 (536)
..++++++|.+|+ +++|+.++++||||||||||||++||++||+++|+++++++|++ ..|++.+++..
T Consensus 72 ~V~d~~~al~~la~~~~~~~~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~gn~~-------~~i~~~~~~~~-- 142 (460)
T PRK00139 72 IVPDLRKALALLAAAFYGHPSDKLKLIGVTGTNGKTTTAYLLAQILRLLGEKTALIGTLG-------NGIGGELIPSG-- 142 (460)
T ss_pred EECCHHHHHHHHHHHHhcChhhccEEEEEECCCCchhHHHHHHHHHHHcCCCEEEECCcc-------cccCCeecccC--
Confidence 3456777777776 45788889999999999999999999999999999999999996 33555544311
Q ss_pred HHHHHHHHHhhhhhhcCCCCCCCHHHHHHHHHHHHHhhCCCcEEEEecccCC----cccccccccCCcEEEEcCCCchhH
Q 048728 113 LAYFWWCYDRLKEKATEDIPMPSYFRFLALLAFKIFTAEQIDVAILEVGLGG----RFDATNVVQKPVVCGISSLGYDHM 188 (536)
Q Consensus 113 ~~~~~~v~~~l~~~~~~~~~~p~~fe~lt~la~~~f~~~~~d~aVlEvg~gg----~~D~tn~i~~P~vaVITnI~~DHl 188 (536)
.+++|.+.++.+|..|.+.++|++|+|+|++| +++.+ +|+++|||||+.||+
T Consensus 143 --------------------~~t~~~~~~~~~l~~~~~~~~~~~VlE~~s~~~~~~~l~~~----~p~iaViTnI~~dHl 198 (460)
T PRK00139 143 --------------------LTTPDALDLQRLLAELVDAGVTYAAMEVSSHALDQGRVDGL----KFDVAVFTNLSRDHL 198 (460)
T ss_pred --------------------CCCcCHHHHHHHHHHHHHCCCCEEEEEcchhhHhhchhcCC----cCCEEEEcCCCcccC
Confidence 13445555666678888999999999999743 44442 689999999999999
Q ss_pred hhhCCCHHHHHHHHHccccCCC-ceeccCCChHHHHHHHHHhhc-----CCCCEEEeC---CCCcccc--c-ceecCCCc
Q 048728 189 EILGNTLGEIAGEKAGIFKYGV-PAFTVPQPEEAMRVLEENASK-----LDVPLQVVP---PLDASLL--N-GLKLGLEG 256 (536)
Q Consensus 189 d~lG~tle~ia~~Ka~I~k~~~-~~v~~~~~~~~~~vl~~~a~~-----~~~~l~~~~---~~~~~~~--~-~~~l~l~G 256 (536)
++|| |+|+|+.+|++|++... .+|+|.|++....+... +.. ...++.... ......+ . .+.++++|
T Consensus 199 ~~~g-t~e~i~~~K~~i~~~~~~~~v~n~dd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G 276 (460)
T PRK00139 199 DYHG-TMEDYLAAKARLFSELGLAAVINADDEVGRRLLAL-PDAYAVSMAGADLRATDVEYTDSGQTFTLVTEVESPLIG 276 (460)
T ss_pred CcCC-CHHHHHHHHHHHHhcCCCeEEEEcCcHhHHHHHhh-cEEEEecCCCCcEEEEEEEEecCceEEEEEEEEEecccc
Confidence 9999 99999999999998755 68889988865444321 111 112222111 0000011 1 46789999
Q ss_pred HHHHHhHHHHHHHHHHHHHhccccccccCCCCCCChHHHHHHHhcCC-CCCceeEEcCCCCCCCCCCCcEEEEECCCCHH
Q 048728 257 EHQYMNAGLAVALSSTWLQRTSQLGINYLDTTSPLPEQFIQGLTMAN-LQGRAQIVPDRYTNSETSGDLVFYLDGAHSPE 335 (536)
Q Consensus 257 ~hq~~Na~aAia~a~~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~vilD~AHnp~ 335 (536)
.||++|+++|++++..+ | ++++.|.++|++++ +|||||++... +++.+|+||||||+
T Consensus 277 ~hn~~NalaAia~a~~l----g-----------i~~~~i~~~L~~~~~~~gR~e~~~~~-------~~~~iI~DyahNP~ 334 (460)
T PRK00139 277 RFNVSNLLAALAALLAL----G-----------VPLEDALAALAKLQGVPGRMERVDAG-------QGPLVIVDYAHTPD 334 (460)
T ss_pred hhHHHHHHHHHHHHHHc----C-----------CCHHHHHHHHHhCCCCCCCcEEEEcC-------CCCEEEEECCCCHH
Confidence 99999999999999988 5 78899999999997 99999999754 46899999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCcccCccccCCCcEEEEEecCCCCChhhhhHHHHHHHHhcCCc
Q 048728 336 SMEICARWFSLAIKEENQQETFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFNCMSVRDPQLLLPSLMKTCARHGVY 415 (536)
Q Consensus 336 si~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg~~~drd~~~~l~~l~~~~~~~~~~ 415 (536)
|+++++++|++ ...+|+++|||++++|+.... +.+...+.. .
T Consensus 335 s~~aal~~l~~----------------------------------~~~~r~i~VlG~g~~k~~~~~-~~~~~~~~~---~ 376 (460)
T PRK00139 335 ALEKVLEALRP----------------------------------HAKGRLICVFGCGGDRDKGKR-PLMGAIAER---L 376 (460)
T ss_pred HHHHHHHHHHh----------------------------------hcCCcEEEEECCCCCCchhhh-HHHHHHHHH---c
Confidence 99999995543 123689999999888887654 444444433 5
Q ss_pred ccEEEEecCCcccccCCCCCCCCCcchhchhHHHHHHHHHHHhccCccccccccCCCCccccccccccccCCCCCceEeC
Q 048728 416 FKKALFVPNASVYNKVGSHALPPTETQIDLSWQFALQRVWENLMLGDKAVEAKNTDNASEDVKDYTELSARSCENSAVFS 495 (536)
Q Consensus 416 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 495 (536)
+|.++++++. +++ +++. ++.+.+..+ .+..++
T Consensus 377 ~d~vi~~~~~----~~~-----~~~~-----------~i~~~~~~~----------------------------~~~~~~ 408 (460)
T PRK00139 377 ADVVIVTSDN----PRS-----EDPA-----------AIIADILAG----------------------------IYDVIE 408 (460)
T ss_pred CCEEEEECCC----CCC-----CCHH-----------HHHHHHHhC----------------------------CCcccC
Confidence 7999988541 222 1111 122222111 113578
Q ss_pred CHHHHHHHHHHHhhhcCCCCceEEEeCchh
Q 048728 496 SLPLAIKWLRDSVQQNQSLRFQVLVTGSLH 525 (536)
Q Consensus 496 si~~Ai~~~~~~~~~~~~~~~~VLvtGSl~ 525 (536)
++++|++++.+.++++ +.|||+|+-|
T Consensus 409 d~~~Ai~~~~~~~~~g----DvVLv~G~G~ 434 (460)
T PRK00139 409 DRAEAIRYAIAQAKPG----DVVLIAGKGH 434 (460)
T ss_pred CHHHHHHHHHHhcCCC----CEEEEEEccC
Confidence 9999999998776554 3899999865
No 8
>PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional
Probab=100.00 E-value=1.8e-44 Score=392.69 Aligned_cols=346 Identities=14% Similarity=0.144 Sum_probs=236.7
Q ss_pred HHHHHHHHHHcC---CcccCCCCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHH
Q 048728 37 FELLSDYLKILD---LDVAISQLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFL 113 (536)
Q Consensus 37 l~~~~~~L~~Lg---~~~p~~~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~ 113 (536)
.++++++|..|+ +++|+.++++||||||||||||++||++||+..|.++++.++. ...+++..+
T Consensus 88 V~d~~~al~~la~~~~~~p~~~~~vIgITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~-------~~~ig~~~~------ 154 (481)
T PRK14022 88 VPDIKKAMSLIAMEFYDNPQHKLKLLAFTGTKGKTTAAYFAYHILKQLHKPAMLSTMN-------TTLDGETFF------ 154 (481)
T ss_pred ECCHHHHHHHHHHHHhcChhhccEEEEEeCCCcHHHHHHHHHHHHHHCCCCEEEEeee-------eeccCCeee------
Confidence 456667776665 4579899999999999999999999999999999877766654 112222111
Q ss_pred HHHHHHHHhhhhhhcCCCCCCCHHHHHHHHHHHHHhhCCCcEEEEecccCCc-ccccccccCCcEEEEcCCCchhHhh--
Q 048728 114 AYFWWCYDRLKEKATEDIPMPSYFRFLALLAFKIFTAEQIDVAILEVGLGGR-FDATNVVQKPVVCGISSLGYDHMEI-- 190 (536)
Q Consensus 114 ~~~~~v~~~l~~~~~~~~~~p~~fe~lt~la~~~f~~~~~d~aVlEvg~gg~-~D~tn~i~~P~vaVITnI~~DHld~-- 190 (536)
....+.|....++.++ ..+.+.+++++|||+|+.|. .+.+..+ +|+++|||||++||+|+
T Consensus 155 --------------~~~~~~p~~~~l~~~~--~~~~e~g~~~~v~EvsS~~~~~~r~~~~-~pdiaViTNI~~DHld~L~ 217 (481)
T PRK14022 155 --------------KSALTTPESLDLFKMM--AEAVDNGMTHLIMEVSSQAYLVGRVYGL-TFDVGVFLNITPDHIGPIE 217 (481)
T ss_pred --------------eCCCCCchHHHHHHHH--HHHHHCCCCEEEEEechhHHHhccccCc-cccEEEEcCCCcccCCCCC
Confidence 0111234222222221 22467899999999997542 2222223 68999999999999999
Q ss_pred hCCCHHHHHHHHHccccCCCceeccCCChHHHHHHHHHhhcCCCCEEEeCC-----------CCcc----cccceecCCC
Q 048728 191 LGNTLGEIAGEKAGIFKYGVPAFTVPQPEEAMRVLEENASKLDVPLQVVPP-----------LDAS----LLNGLKLGLE 255 (536)
Q Consensus 191 lG~tle~ia~~Ka~I~k~~~~~v~~~~~~~~~~vl~~~a~~~~~~l~~~~~-----------~~~~----~~~~~~l~l~ 255 (536)
|| |+|+|+.+|++||+++.++|+|.|++....... .+.. .++..+.. +... ....+.++++
T Consensus 218 ~~-t~e~~a~aK~~i~~~~~~~Vln~d~d~~~~~~~-~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 293 (481)
T PRK14022 218 HP-TFEDYFYHKRLLMENSKAVVVNSDMDHFSELLE-QVTP--QEHDFYGIDSENQIMASNAFSFEATGKLAGTYDIQLI 293 (481)
T ss_pred CC-CHHHHHHHHHHHhcCCCEEEEEcCCCHHHHHHH-HhcC--CCEEEEecCCccceEEEEEEEEEEcccCCceEEEEEe
Confidence 66 999999999999999888999887333322222 2211 12211110 0000 0123567899
Q ss_pred cHHHHHhHHHHHHHHHHHHHhccccccccCCCCCCChHHHHHHHhcCCCCCceeEEcCCCCCCCCCCCcEEEEECCCCHH
Q 048728 256 GEHQYMNAGLAVALSSTWLQRTSQLGINYLDTTSPLPEQFIQGLTMANLQGRAQIVPDRYTNSETSGDLVFYLDGAHSPE 335 (536)
Q Consensus 256 G~hq~~Na~aAia~a~~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~~~~pGR~E~v~~~~~~~~~~~~~~vilD~AHnp~ 335 (536)
|.||++|+++|++++..+ | ++++.|.++|++..||||||++... +++.+|+||||||+
T Consensus 294 G~hnv~NalaAia~a~~l----g-----------i~~~~i~~~L~~~~~~gR~e~i~~~-------~g~~vi~DyahNP~ 351 (481)
T PRK14022 294 GKFNQENAMAAGLACLRL----G-----------ASLEDIQKGIAQTPVPGRMEVLTQS-------NGAKVFIDYAHNGD 351 (481)
T ss_pred chhhHHHHHHHHHHHHHc----C-----------CCHHHHHHHhccCCCCCCeEEEECC-------CCCEEEEECCCCHH
Confidence 999999999999999987 5 7789999999995599999999753 46789999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCcccCccccCCCcEEEEEecCCCCChhhhhHHHHHHHHhcCCc
Q 048728 336 SMEICARWFSLAIKEENQQETFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFNCMSVRDPQLLLPSLMKTCARHGVY 415 (536)
Q Consensus 336 si~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg~~~drd~~~~l~~l~~~~~~~~~~ 415 (536)
|++++++.++ . ++.+|+++|||++++|+..++ +.|++.+.+.
T Consensus 352 s~~aal~~l~----~------------------------------~~~~r~i~V~G~~~e~g~~~~-~~~~~~~~~~--- 393 (481)
T PRK14022 352 SLNKLIDVVE----E------------------------------HQKGKLILLLGAAGNKGESRR-PDFGRVANRH--- 393 (481)
T ss_pred HHHHHHHHHh----h------------------------------hCCCCEEEEECCCCCCCcchh-HHHHHHHHhc---
Confidence 9999999443 3 234689999999999998885 6777777652
Q ss_pred cc-EEEEecCCcccccCCCCCCCCCcchhchhHHHHHHHHHHHhccCccccccccCCCCccccccccccccCCCCCceEe
Q 048728 416 FK-KALFVPNASVYNKVGSHALPPTETQIDLSWQFALQRVWENLMLGDKAVEAKNTDNASEDVKDYTELSARSCENSAVF 494 (536)
Q Consensus 416 ~d-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 494 (536)
.+ .++++++ ++++ +++. ++.+.+..+. ...+.++
T Consensus 394 ~~~~vi~~~~----~~r~-----e~~~-----------~i~~~i~~~~-------------------------~~~~~~~ 428 (481)
T PRK14022 394 PYLQVILTAD----DPNN-----EDPK-----------MITQEIASHI-------------------------THPVEII 428 (481)
T ss_pred CCceEEEccC----CCCC-----CCHH-----------HHHHHHHhcC-------------------------CCCeEEE
Confidence 23 3666543 2333 2221 1222221110 0124568
Q ss_pred CCHHHHHHHHHHHhh-hcCCCCceEEEeCchh
Q 048728 495 SSLPLAIKWLRDSVQ-QNQSLRFQVLVTGSLH 525 (536)
Q Consensus 495 ~si~~Ai~~~~~~~~-~~~~~~~~VLvtGSl~ 525 (536)
+++++|++++++.++ ++ +.|||+|.-|
T Consensus 429 ~d~~~Ai~~a~~~a~~~g----D~VLi~G~G~ 456 (481)
T PRK14022 429 DDRAEAIKHAMSITEGPG----DAVIIAGKGA 456 (481)
T ss_pred CCHHHHHHHHHHhcCCCC----CEEEEEecCC
Confidence 999999999988765 44 3799999764
No 9
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=3e-44 Score=420.30 Aligned_cols=351 Identities=21% Similarity=0.245 Sum_probs=252.3
Q ss_pred HHHHHHHHHHcC---CcccCCCCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHH
Q 048728 37 FELLSDYLKILD---LDVAISQLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFL 113 (536)
Q Consensus 37 l~~~~~~L~~Lg---~~~p~~~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~ 113 (536)
.++++++|..|+ +++|+.++++||||||||||||++||++||+++|+++++++|.. ..+++..+..
T Consensus 90 V~d~~~al~~la~~~~~~p~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~-------~~i~~~~i~~---- 158 (958)
T PRK11929 90 VADLRKALGELAARWYGRPSEQLSLVAVTGTNGKTSCAQLLAQLLTRLGKPCGSIGTLG-------ARLDGRLIPG---- 158 (958)
T ss_pred ECCHHHHHHHHHHHHHhChhhccEEEEEECCCccHHHHHHHHHHHHHcCCCEEEECCcc-------ccCCCeeeec----
Confidence 456667776664 45888899999999999999999999999999999999998862 2223332221
Q ss_pred HHHHHHHHhhhhhhcCCCCCCCHHHHHHHHHHHHHhhCCCcEEEEeccc----CCcccccccccCCcEEEEcCCCchhHh
Q 048728 114 AYFWWCYDRLKEKATEDIPMPSYFRFLALLAFKIFTAEQIDVAILEVGL----GGRFDATNVVQKPVVCGISSLGYDHME 189 (536)
Q Consensus 114 ~~~~~v~~~l~~~~~~~~~~p~~fe~lt~la~~~f~~~~~d~aVlEvg~----gg~~D~tn~i~~P~vaVITnI~~DHld 189 (536)
....|+++++.+++ ..|.+.++|++|||+|+ +++++.+ +|+++|||||++||++
T Consensus 159 ----------------~~t~~~~~~~~~~l--~~~~~~~~~~~VlE~ss~~l~~~rl~~~----~p~iaviTnI~~dHl~ 216 (958)
T PRK11929 159 ----------------SLTTPDAIILHRIL--ARMRAAGADAVAMEASSHGLEQGRLDGL----RIAVAGFTNLTRDHLD 216 (958)
T ss_pred ----------------CCCCCCHHHHHHHH--HHHHHCCCCEEEEEeccchHhhCccccc----ccCEEEEeCCCccccc
Confidence 12347777776664 45778899999999986 4567764 5799999999999999
Q ss_pred hhCCCHHHHHHHHHcccc---CCCceeccCCChHHHHHHHHHhhcC---------CCCEEEe----CC----CCc---cc
Q 048728 190 ILGNTLGEIAGEKAGIFK---YGVPAFTVPQPEEAMRVLEENASKL---------DVPLQVV----PP----LDA---SL 246 (536)
Q Consensus 190 ~lG~tle~ia~~Ka~I~k---~~~~~v~~~~~~~~~~vl~~~a~~~---------~~~l~~~----~~----~~~---~~ 246 (536)
+|| |+|+|+++|++||+ +++++|+|.|++....++...+... ..++... .. +.. ..
T Consensus 217 ~~g-t~e~i~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 295 (958)
T PRK11929 217 YHG-TMQDYEEAKAALFSKLPGLGAAVINADDPAAARLLAALPRGLKVGYSPQNAGADVQARDLRATAHGQVFTLATPDG 295 (958)
T ss_pred cCC-CHHHHHHHHHHHhcCCccCCeEEEECCCHHHHHHHHHcCCCceEEEEeeCCCccEEEEEEEEcCCceEEEEEeCCc
Confidence 999 99999999999998 6778999999987655544322111 1122110 00 000 00
Q ss_pred ccceecCCCcHHHHHhHHHHHHHHHHHHHhccccccccCCCCCCChHHHHHHHhcCC-CCCceeEEc---CCCCCCCCCC
Q 048728 247 LNGLKLGLEGEHQYMNAGLAVALSSTWLQRTSQLGINYLDTTSPLPEQFIQGLTMAN-LQGRAQIVP---DRYTNSETSG 322 (536)
Q Consensus 247 ~~~~~l~l~G~hq~~Na~aAia~a~~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~~~-~pGR~E~v~---~~~~~~~~~~ 322 (536)
...+.++++|.||++|+++|++++..+ | ++++.|.++|++|. ||||||++. .. +
T Consensus 296 ~~~~~l~l~G~hnv~NalaAia~a~~l----g-----------i~~~~I~~~L~~~~~~~gR~e~i~~~~~~-------~ 353 (958)
T PRK11929 296 SYQLVTRLLGRFNVSNLLLVAAALKKL----G-----------LPLAQIARALAAVSPVPGRMERVGPTAGA-------Q 353 (958)
T ss_pred eEEEEecCccHhhHHHHHHHHHHHHHc----C-----------CCHHHHHHHHhcCCCCCCCcEEeccccCC-------C
Confidence 123678999999999999999999988 5 78899999999995 999999994 22 3
Q ss_pred CcEEEEECCCCHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCcccCccccCCCcEEEEEecCCCCChhhhh
Q 048728 323 DLVFYLDGAHSPESMEICARWFSLAIKEENQQETFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFNCMSVRDPQLLL 402 (536)
Q Consensus 323 ~~~vilD~AHnp~si~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg~~~drd~~~~l 402 (536)
++.+|+||||||+|++++++.++.. .. ++.+|+|+||||+++||...+
T Consensus 354 ~~~vi~DyahnP~s~~a~l~~l~~~-~~------------------------------~~~~r~i~V~g~g~~r~~~~~- 401 (958)
T PRK11929 354 GPLVVVDYAHTPDALAKALTALRPV-AQ------------------------------ARNGRLVCVFGCGGDRDKGKR- 401 (958)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHh-cc------------------------------cCCCcEEEEECCCCCCCcchh-
Confidence 6889999999999999999955431 01 234678999999988886654
Q ss_pred HHHHHHHHhcCCcccEEEEecCCcccccCCCCCCCCCcchhchhHHHHHHHHHHHhccCccccccccCCCCccccccccc
Q 048728 403 PSLMKTCARHGVYFKKALFVPNASVYNKVGSHALPPTETQIDLSWQFALQRVWENLMLGDKAVEAKNTDNASEDVKDYTE 482 (536)
Q Consensus 403 ~~l~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 482 (536)
+.|...+.+ ++|.++++++ ++++ +++. ++.+.+..+..
T Consensus 402 ~~~~~~~~~---~~d~vi~t~~----~pr~-----e~p~-----------~i~~~i~~~~~------------------- 439 (958)
T PRK11929 402 PEMGRIAAE---LADRVVVTSD----NPRS-----EAPE-----------AIIDQILAGIP------------------- 439 (958)
T ss_pred HHHHHHHHH---hCCEEEEcCC----CCCC-----CCHH-----------HHHHHHHhhcc-------------------
Confidence 344444433 5799998754 3333 2221 11112211100
Q ss_pred cccCCCCCceEeCCHHHHHHHHHHHhhhcCCCCceEEEeCchh
Q 048728 483 LSARSCENSAVFSSLPLAIKWLRDSVQQNQSLRFQVLVTGSLH 525 (536)
Q Consensus 483 ~~~~~~~~~~v~~si~~Ai~~~~~~~~~~~~~~~~VLvtGSl~ 525 (536)
...++.+++++.+|++++.+.++++ +.|||+||-|
T Consensus 440 ----~~~~~~~~~d~~~Ai~~a~~~a~~g----D~VLv~GsG~ 474 (958)
T PRK11929 440 ----AGARVFVISDRAEAIRQAIWMAAPG----DVILIAGKGH 474 (958)
T ss_pred ----CCCceEEECCHHHHHHHHHHhcCCC----CEEEEeecCc
Confidence 0013567899999999998877554 3899999976
No 10
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.3e-43 Score=381.80 Aligned_cols=338 Identities=22% Similarity=0.281 Sum_probs=260.8
Q ss_pred HHcCCcccCCCCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeee-CCeecCHHHHHHHHHHHHHhh
Q 048728 45 KILDLDVAISQLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRL-DGDDISEDKFLAYFWWCYDRL 123 (536)
Q Consensus 45 ~~Lg~~~p~~~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~i-nG~~is~~~f~~~~~~v~~~l 123 (536)
....|+.|+.++++|+||||||||||++++.++++..|++++++++-. ..+ .|...
T Consensus 80 a~~~y~~ps~~l~vigvTGTNgKTt~t~~~~~~~~~~g~~~~~~gT~g-------~~~~~~~~~---------------- 136 (475)
T COG0769 80 ALAFYGLPSGKLKVIGVTGTNGKTTTTSLLAQILKKLGKKTALIGTEG-------DELSPGILE---------------- 136 (475)
T ss_pred HHHhccCcccCceEEEEcCCCcHHHHHHHHHHHHHhcCCceEEEEEEe-------eeccCCccc----------------
Confidence 333466899889999999999999999999999999999999998861 222 12211
Q ss_pred hhhhcCCCCCCCHHHHHHHHHHHHHhhCCCcEEEEeccc----CCcccccccccCCcEEEEcCCCchhHhhhCCCHHHHH
Q 048728 124 KEKATEDIPMPSYFRFLALLAFKIFTAEQIDVAILEVGL----GGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIA 199 (536)
Q Consensus 124 ~~~~~~~~~~p~~fe~lt~la~~~f~~~~~d~aVlEvg~----gg~~D~tn~i~~P~vaVITnI~~DHld~lG~tle~ia 199 (536)
..+...|+.+.++.++ ..+.+.++++++||+++ .+|.+.+.+ +++++|||+.||+|+|+ |+|+|+
T Consensus 137 ----~~~~tTP~~~~l~~~~--~~~~d~~~e~~vmEvssh~l~~~Rv~~~~f----~v~~ftnls~DHlD~h~-t~e~Y~ 205 (475)
T COG0769 137 ----PTGLTTPEALDLQNLL--RDLLDRGAEIAVMEVSSHGLVQGRVEGVTF----DVGVFTNLSRDHLDYHG-TMEYYG 205 (475)
T ss_pred ----ccCCCCccHHHHHHHH--HHHHHcCCcEEEEEeehhHHHhCCccCceE----EEEeccccCchhhcccC-cHHHHH
Confidence 1223458888888776 67889999999999998 467788777 78899999999999999 999999
Q ss_pred HHHHcccc---CCCceeccCCChHHHHHHHHHhhcCCCCEEEeCC-----------CC------------cccccceecC
Q 048728 200 GEKAGIFK---YGVPAFTVPQPEEAMRVLEENASKLDVPLQVVPP-----------LD------------ASLLNGLKLG 253 (536)
Q Consensus 200 ~~Ka~I~k---~~~~~v~~~~~~~~~~vl~~~a~~~~~~l~~~~~-----------~~------------~~~~~~~~l~ 253 (536)
.+|..+|+ ..+.+|+|.||+..... +........+++.++. ++ ......+.++
T Consensus 206 ~aK~~lf~~~~~~~~~Vin~dd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~ 284 (475)
T COG0769 206 AAKAVLFESLPHSGEAVINPDDGHGLDY-KERLKNALGDYITYGCDFKRPDLDYRGIEESSSGSDFVFEPSGGIGEYELP 284 (475)
T ss_pred HHHHHHHhhcCCCccEEEccCCchHHHH-HHHHHhcCCCEEEeCCCCchhhhhhccceeeeccceeEEEccCCceeEecc
Confidence 99999985 55678999999876322 2222222223333221 00 0012457899
Q ss_pred CCcHHHHHhHHHHHHHHHHHHHhccccccccCCCCCCChHHHHHHHhcCC-CCCceeEEcCCCCCCCCCCCcEEEEECCC
Q 048728 254 LEGEHQYMNAGLAVALSSTWLQRTSQLGINYLDTTSPLPEQFIQGLTMAN-LQGRAQIVPDRYTNSETSGDLVFYLDGAH 332 (536)
Q Consensus 254 l~G~hq~~Na~aAia~a~~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~vilD~AH 332 (536)
|+|.||++|+++|++++..+ | .+++.|.++|++++ ++||||.+..+ ++.+++||||
T Consensus 285 L~G~fNv~NaLaA~a~~~~l----G-----------~~~e~i~~~l~~~~~v~GRmE~v~~~--------~~~v~VDyAH 341 (475)
T COG0769 285 LPGLFNVYNALAAVAAALAL----G-----------VDLEDILAGLETLKPVPGRMELVNIG--------GKLVIVDYAH 341 (475)
T ss_pred ccchhHHHHHHHHHHHHHHc----C-----------CCHHHHHHHHHhcCCCCCcceEecCC--------CCeEEEEecc
Confidence 99999999999999999998 5 88999999999997 99999999865 6899999999
Q ss_pred CHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCcccCccccCCCcEEEEEecCCCCChhhhhHHHHHHHHhc
Q 048728 333 SPESMEICARWFSLAIKEENQQETFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFNCMSVRDPQLLLPSLMKTCARH 412 (536)
Q Consensus 333 np~si~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg~~~drd~~~~l~~l~~~~~~~ 412 (536)
||++++++++ .++. +..+++++||||.||||..++ +.|++.+.+
T Consensus 342 nPd~le~~L~----~~~~------------------------------~~~g~li~VfG~gGDrD~~kr-~~mg~ia~~- 385 (475)
T COG0769 342 NPDGLEKALR----AVRL------------------------------HAAGRLIVVFGCGGDRDKSKR-PDMGAIAEQ- 385 (475)
T ss_pred ChHHHHHHHH----HHHh------------------------------hcCCcEEEEECccCCCCcccc-cchHHHHHh-
Confidence 9999999999 5554 245789999999999999999 889998876
Q ss_pred CCcccEEEEecCCcccccCCCCCCCCCcchhchhHHHHHHHHHHHhccCccccccccCCCCccccccccccccCCCCCce
Q 048728 413 GVYFKKALFVPNASVYNKVGSHALPPTETQIDLSWQFALQRVWENLMLGDKAVEAKNTDNASEDVKDYTELSARSCENSA 492 (536)
Q Consensus 413 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (536)
.+|.+|+|++ +||+ +++. .+++++-..+.. ...+.
T Consensus 386 --~ad~vivt~d----npR~-----edp~-------~i~~~i~~g~~~---------------------------~~~~~ 420 (475)
T COG0769 386 --LADIVIVTSD----NPRS-----EDPA-------VILADILAGIEA---------------------------PEKYE 420 (475)
T ss_pred --cCCcEEEcCC----CCCC-----cCHH-------HHHHHHHhccCC---------------------------cccee
Confidence 6899998875 4544 3332 344444333211 01266
Q ss_pred EeCCHHHHHHHHHHHhhhcCCCCceEEEeCchh
Q 048728 493 VFSSLPLAIKWLRDSVQQNQSLRFQVLVTGSLH 525 (536)
Q Consensus 493 v~~si~~Ai~~~~~~~~~~~~~~~~VLvtGSl~ 525 (536)
+..++.+||+.+++.+++++ .|+|+|+-|
T Consensus 421 ~~~dr~~AI~~ai~~a~~~D----~vliagkGh 449 (475)
T COG0769 421 IIEDREEAIRKALDLAKEGD----VVLIAGKGH 449 (475)
T ss_pred cchhHHHHHHHHHHhhccCC----EEEEeeccc
Confidence 78899999999999887554 799999976
No 11
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=100.00 E-value=2.4e-42 Score=397.39 Aligned_cols=345 Identities=18% Similarity=0.169 Sum_probs=252.7
Q ss_pred HHHHHHHHcCCcccCCCCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHHHH
Q 048728 39 LLSDYLKILDLDVAISQLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFWW 118 (536)
Q Consensus 39 ~~~~~L~~Lg~~~p~~~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~~~ 118 (536)
-...+++.|....|..++++||||||||||||++||++||+.+|+++|+++|+ ++.||+..+....
T Consensus 462 v~~~Il~~lfp~~~~~~ipiI~VTGTNGKTTTt~mia~IL~~~G~~vG~~tS~-------G~~i~~~~i~~g~------- 527 (864)
T TIGR02068 462 VARAIVDMLFPAEDDGRIPIVSVTGTNGKTTTTRLVAHILKQTGKVVGMTTTD-------GVYIGKYLVEKGD------- 527 (864)
T ss_pred HHHHHHHHhcccCCCCceEEEEEeCCCCHhHHHHHHHHHHHHCCCcEEEecCC-------ceEECCEEEecCC-------
Confidence 34566666643467888999999999999999999999999999999999997 6778887664321
Q ss_pred HHHhhhhhhcCCCCCCCHHHHHHHHHHHHHhhCCCcEEEEecccCCcccccccccCCcEEEEcCCCchhHhhhC-CCHHH
Q 048728 119 CYDRLKEKATEDIPMPSYFRFLALLAFKIFTAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILG-NTLGE 197 (536)
Q Consensus 119 v~~~l~~~~~~~~~~p~~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D~tn~i~~P~vaVITnI~~DHld~lG-~tle~ 197 (536)
...| ..++.+|.+.++|++|+|+|+||.++.++.+.+|+++|||||+.||++++| +|+|+
T Consensus 528 ------------~t~p-------~sa~~~l~~~~vd~aVlE~~~ggil~~gl~~~~pdvaVITNI~~DHL~~~g~~tlE~ 588 (864)
T TIGR02068 528 ------------NTGP-------ASARRILMDPTVDAAVLETARGGILREGLAFDRCDVGVVTNIAGDHLGIGDINTIED 588 (864)
T ss_pred ------------CCCh-------HHHHHHhhCCCCCEEEEEccCCchhhccCCcccccEEEEecCCHHHcCCCCCCCHHH
Confidence 0112 222344678899999999999999999988888999999999999999876 69999
Q ss_pred HHHHHHccc---cCCCceeccCCChHHHHHHHHHhhcCCCCEEEeC--C-C----------------Cc--------c--
Q 048728 198 IAGEKAGIF---KYGVPAFTVPQPEEAMRVLEENASKLDVPLQVVP--P-L----------------DA--------S-- 245 (536)
Q Consensus 198 ia~~Ka~I~---k~~~~~v~~~~~~~~~~vl~~~a~~~~~~l~~~~--~-~----------------~~--------~-- 245 (536)
|+.+|++|+ ++++.+|+|.|++.+..+.. . ..+++..+. . . .. .
T Consensus 589 ia~~K~~i~~~i~~~g~~VlNaDd~~~~~~a~-~---~~~~vi~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~ 664 (864)
T TIGR02068 589 LADVKRVVVEVVLPDGYAVLNADDPMVAAMAE-K---CKGKIAYFSMDPNNPTVAAHIADGGRAVYYENGYIVIARGGDE 664 (864)
T ss_pred HHHHHHHHHHhhcCCCEEEEECCCHHHHHHHH-h---CCCCEEEEecCCCChHHHHHHHcCCcEEEEcCCEEEEEecCcc
Confidence 999999995 67888999999987644332 1 222322221 0 0 00 0
Q ss_pred ----cccceecCCCc--HHHHHhHHHHHHHHHHHHHhccccccccCCCCCCChHHHHHHHhcCC-----CCCceeEEcCC
Q 048728 246 ----LLNGLKLGLEG--EHQYMNAGLAVALSSTWLQRTSQLGINYLDTTSPLPEQFIQGLTMAN-----LQGRAQIVPDR 314 (536)
Q Consensus 246 ----~~~~~~l~l~G--~hq~~Na~aAia~a~~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~~~-----~pGR~E~v~~~ 314 (536)
....+.+++.| .||++|+++|++++..+ | ++++.|.++|++|. ||||||++...
T Consensus 665 ~~~~~~~~lpl~~~G~g~~nv~NalaAiaaa~~l----g-----------i~~e~I~~gL~~F~~~~~~~pGR~e~~~~~ 729 (864)
T TIGR02068 665 VAIARIAAIPLTMGGRVAFQIENALAAVAAAWAL----G-----------VPIELIRAGIRTFDADAAQAPGRFNLFNLG 729 (864)
T ss_pred ccccceeeeccccCCcccchHHHHHHHHHHHHHc----C-----------CCHHHHHHHHHhccccccCCCCceEEEEeC
Confidence 00122333445 89999999999999988 5 78899999999984 89999998543
Q ss_pred CCCCCCCCCcEEEEECCCCHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCcccCccccCCCcEEEEEecCC
Q 048728 315 YTNSETSGDLVFYLDGAHSPESMEICARWFSLAIKEENQQETFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFNCMS 394 (536)
Q Consensus 315 ~~~~~~~~~~~vilD~AHnp~si~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg~~~ 394 (536)
++.+|+||||||+|++++++ .++. ++.+++|+|||+++
T Consensus 730 --------g~~vI~DyAHNP~a~~all~----~l~~------------------------------~~~~r~i~Vig~~g 767 (864)
T TIGR02068 730 --------GAHVLVDYGHNPAAIEAVGA----AIRN------------------------------WPARRRIGVIGGPG 767 (864)
T ss_pred --------CcEEEEEcCCCHHHHHHHHH----HHHh------------------------------cCCCCEEEEECCCC
Confidence 58899999999999999999 4443 34467899999999
Q ss_pred CCChhhhhHHHHHHHHhcCCcccEEEEecCCcccccCCCCCCCCCcchhchhHHHHHHHHHHHhccCccccccccCCCCc
Q 048728 395 VRDPQLLLPSLMKTCARHGVYFKKALFVPNASVYNKVGSHALPPTETQIDLSWQFALQRVWENLMLGDKAVEAKNTDNAS 474 (536)
Q Consensus 395 drd~~~~l~~l~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~~~~~l~~~~~~~~~~~~~~~~ 474 (536)
||+...+ ..|++.+.+ .||.++++.+. +.|+ .+..+. . ..+. +.+..+.
T Consensus 768 dr~~~~~-~~lg~~l~~---~~d~vil~~~~---~~rg---~~~ge~-----~-~~i~---~~~~~~~------------ 816 (864)
T TIGR02068 768 DRRDEDL-VEQGELLGG---AFDQIILKEDD---DVRG---RPRGEA-----A-ALLR---QGLRQSA------------ 816 (864)
T ss_pred CCChhHH-HHHHHHHHH---hCCEEEEEeCC---CcCC---CCCchH-----H-HHHH---HHHHhcC------------
Confidence 9988877 667777764 58999998652 3344 222211 0 1111 1221110
Q ss_pred cccccccccccCCCCCceEeCCHHHHHHHHHHHhhhcCCCCceEEEeCch
Q 048728 475 EDVKDYTELSARSCENSAVFSSLPLAIKWLRDSVQQNQSLRFQVLVTGSL 524 (536)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~v~~si~~Ai~~~~~~~~~~~~~~~~VLvtGSl 524 (536)
....+.++++..+|++++++.++++ +.|||++-=
T Consensus 817 ------------~~~~v~~~~d~~eAi~~a~~~a~~g----DlVLi~~~~ 850 (864)
T TIGR02068 817 ------------RKAAIEDILDETEAIAAALDDLRAG----DLVVIFPES 850 (864)
T ss_pred ------------CCCcEEEEcCHHHHHHHHHHhCCCC----CEEEEEecc
Confidence 0124677899999999999877654 379998854
No 12
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown.
Probab=100.00 E-value=1e-41 Score=369.53 Aligned_cols=354 Identities=21% Similarity=0.253 Sum_probs=238.4
Q ss_pred HHHHHHHHHHcC---CcccCCCCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHH
Q 048728 37 FELLSDYLKILD---LDVAISQLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFL 113 (536)
Q Consensus 37 l~~~~~~L~~Lg---~~~p~~~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~ 113 (536)
.+++.+.|.+|+ +.+|+.++++||||||||||||++||+++|+..|+++++++|++. .+++..+-
T Consensus 63 v~d~~~al~~la~~~~~~~~~~~~vI~ITGTnGKTTT~~ml~~iL~~~g~~~~~~~t~g~-------~~~~n~~i----- 130 (464)
T TIGR01085 63 VPDLRHALSSLAAAFYGHPSKKLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIGTIGY-------RLGGNDLI----- 130 (464)
T ss_pred ECCHHHHHHHHHHHHhCChhHccEEEEEECCCCcHhHHHHHHHHHHHcCCCEEEECccce-------eECCeeee-----
Confidence 445566666655 235667889999999999999999999999999999999999953 22221110
Q ss_pred HHHHHHHHhhhhhhcCCCCCCCHHHHHHHH-HHHHHhhCCCcEEEEeccc-CCcccccccccCCcEEEEcCCCchhHhhh
Q 048728 114 AYFWWCYDRLKEKATEDIPMPSYFRFLALL-AFKIFTAEQIDVAILEVGL-GGRFDATNVVQKPVVCGISSLGYDHMEIL 191 (536)
Q Consensus 114 ~~~~~v~~~l~~~~~~~~~~p~~fe~lt~l-a~~~f~~~~~d~aVlEvg~-gg~~D~tn~i~~P~vaVITnI~~DHld~l 191 (536)
.. ....+.++.+++. .+..+.+.++|++|+|+|+ +++......+ +|+++|||||++||+++|
T Consensus 131 --------------g~-p~~~tt~~~~~~~~~l~~~~~~~~~~~VlE~g~~~~~~~~l~~~-~p~iaviTnI~~dHl~~~ 194 (464)
T TIGR01085 131 --------------KN-PAALTTPEALTLQSTLAEMVEAGAQYAVMEVSSHALAQGRVRGV-RFDAAVFTNLSRDHLDFH 194 (464)
T ss_pred --------------cC-cccCCCCCHHHHHHHHHHHHHCCCCEEEEEecHHHHhhCCccCc-eeCEEEEccCCCCCCccc
Confidence 00 0012344444432 2344557899999999997 2333333333 799999999999999999
Q ss_pred CCCHHHHHHHHHccccC---CCceeccCCChHHHHHHHHHhhcC------------CCCEEEeC---CCCcc--------
Q 048728 192 GNTLGEIAGEKAGIFKY---GVPAFTVPQPEEAMRVLEENASKL------------DVPLQVVP---PLDAS-------- 245 (536)
Q Consensus 192 G~tle~ia~~Ka~I~k~---~~~~v~~~~~~~~~~vl~~~a~~~------------~~~l~~~~---~~~~~-------- 245 (536)
| |+|+|+++|++||+. ++.+|+|.|++............. .+++.... .....
T Consensus 195 g-s~e~i~~~K~~i~~~~~~~g~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (464)
T TIGR01085 195 G-TMENYFAAKASLFTELGLKRFAVINLDDEYGAQFVKRLPKDITVSAITQPADGRAQDIKITDSGYSFEGQQFTFETPA 273 (464)
T ss_pred C-CHHHHHHHHHHHhccccCCCeEEEEcCCHHHHHHHHhcCCCeEEEEecCCCccccccEEEEEEEEecCceEEEEEeCC
Confidence 9 999999999999985 345888998886544322211100 01111100 00000
Q ss_pred cccceecCCCcHHHHHhHHHHHHHHHHHHHhccccccccCCCCCCChHHHHHHHhcCC-CCCceeEEcCCCCCCCCCCCc
Q 048728 246 LLNGLKLGLEGEHQYMNAGLAVALSSTWLQRTSQLGINYLDTTSPLPEQFIQGLTMAN-LQGRAQIVPDRYTNSETSGDL 324 (536)
Q Consensus 246 ~~~~~~l~l~G~hq~~Na~aAia~a~~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~ 324 (536)
....+.++++|.||++|+++|++++..+ | +.+++.|.++|++|. +|||||++... +++
T Consensus 274 ~~~~~~l~l~G~hn~~NalaAia~a~~l----g----------~i~~e~i~~~L~~~~~~~gR~e~~~~~-------~g~ 332 (464)
T TIGR01085 274 GEGHLHTPLIGRFNVYNLLAALATLLHL----G----------GIDLEDIVAALEKFRGVPGRMELVDGG-------QKF 332 (464)
T ss_pred ceEEEEecCccHhHHHHHHHHHHHHHHc----C----------CCCHHHHHHHHHhCCCCCCCcEEEEcC-------CCC
Confidence 0123678999999999999999999887 3 267899999999996 99999999754 468
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCcccCccccCCCcEEEEEecCCCCChhhhhHH
Q 048728 325 VFYLDGAHSPESMEICARWFSLAIKEENQQETFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFNCMSVRDPQLLLPS 404 (536)
Q Consensus 325 ~vilD~AHnp~si~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg~~~drd~~~~l~~ 404 (536)
.+|+||||||+||+++++++++ ++.+|+|+|||++++|+... ..
T Consensus 333 ~vi~Dy~~NP~s~~aal~~l~~----------------------------------~~~~r~i~VlGlg~~~~~~~--~~ 376 (464)
T TIGR01085 333 LVIVDYAHTPDALEKALRTLRK----------------------------------HKDGRLIVVFGCGGDRDRGK--RP 376 (464)
T ss_pred EEEEECCCCHHHHHHHHHHHHh----------------------------------hCCCcEEEEECCCCCCCcch--hH
Confidence 9999999999999999995543 23458899999877776653 23
Q ss_pred HHHHHHhcCCcccEEEEecCCcccccCCCCCCCCCcchhchhHHHHHHHHHHHhccCccccccccCCCCccccccccccc
Q 048728 405 LMKTCARHGVYFKKALFVPNASVYNKVGSHALPPTETQIDLSWQFALQRVWENLMLGDKAVEAKNTDNASEDVKDYTELS 484 (536)
Q Consensus 405 l~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (536)
+++.+... .+|.++++.+. +++ +++. ...+++++.+..
T Consensus 377 ~~~~~~~~--~~d~vi~~g~~----~~~-----~~~~-------~~~~~~~~~~~~------------------------ 414 (464)
T TIGR01085 377 LMGAIAEQ--LADLVILTSDN----PRG-----EDPE-------QIIADILAGISE------------------------ 414 (464)
T ss_pred HHHHHHHh--cCCEEEEeCCC----cCC-----CCHH-------HHHHHHHhcccC------------------------
Confidence 33433332 47888887541 122 1111 111222222110
Q ss_pred cCCCCCceEeCCHHHHHHHHHHHhhhcCCCCceEEEeCchh
Q 048728 485 ARSCENSAVFSSLPLAIKWLRDSVQQNQSLRFQVLVTGSLH 525 (536)
Q Consensus 485 ~~~~~~~~v~~si~~Ai~~~~~~~~~~~~~~~~VLvtGSl~ 525 (536)
...+.++++.++|++++.+.+++++ .|||+|.-+
T Consensus 415 ---~~~~~~~~~~~~a~~~~~~~~~~~d----~VLv~G~g~ 448 (464)
T TIGR01085 415 ---KEKVVIIADRRQAIRYAISNAKAGD----VVLIAGKGH 448 (464)
T ss_pred ---CCcEEEECCHHHHHHHHHHhcCCCC----EEEEEEcCC
Confidence 0124568999999999988776543 899999753
No 13
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.
Probab=100.00 E-value=9.7e-41 Score=357.21 Aligned_cols=278 Identities=22% Similarity=0.256 Sum_probs=201.1
Q ss_pred CHHHHHHHHHHcC---CcccCCCCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHH
Q 048728 36 RFELLSDYLKILD---LDVAISQLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKF 112 (536)
Q Consensus 36 ~l~~~~~~L~~Lg---~~~p~~~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f 112 (536)
..+++++.|..|+ +.+| ..++|+||||||||||+.||++||+..|+ .+.|+. ++++++ |
T Consensus 53 ~V~d~~~al~~la~~~~~~~--~~~vI~VTGTnGKTTt~~ll~~iL~~~g~---~~~t~g--n~n~~i---g-------- 114 (417)
T TIGR01143 53 LVDDTLEALQALASAKRAKF--SGKVIGITGSSGKTTTKEMLAAILSHKYK---VFATPG--NFNNEI---G-------- 114 (417)
T ss_pred EECCHHHHHHHHHHHHHhhC--CCCEEEEcCCCchhHHHHHHHHHHhccCc---EecCCC--cCCCcc---c--------
Confidence 3456667777665 2344 36899999999999999999999999886 345552 222222 1
Q ss_pred HHHHHHHHHhhhhhhcCCCCCCCHHHHHHHHHHHHHhhCCCcEEEEecccCCccc---ccccccCCcEEEEcCCCchhHh
Q 048728 113 LAYFWWCYDRLKEKATEDIPMPSYFRFLALLAFKIFTAEQIDVAILEVGLGGRFD---ATNVVQKPVVCGISSLGYDHME 189 (536)
Q Consensus 113 ~~~~~~v~~~l~~~~~~~~~~p~~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D---~tn~i~~P~vaVITnI~~DHld 189 (536)
.|. ++ .+.+.++|++|||+|+.+..+ .++.+ +|+++|||||++||+|
T Consensus 115 --------------------~p~-----~~----l~~~~~~~~~VlE~g~s~~g~~~~~~~~~-~p~vaviTNi~~dHld 164 (417)
T TIGR01143 115 --------------------LPL-----TL----LRAPGDHDYAVLEMGASHPGEIAYLAEIA-KPDIAVITNIGPAHLE 164 (417)
T ss_pred --------------------hhH-----HH----hcCCCCCeEEEEEeCCCCCCcHHHHhCcc-CCCEEEEcCCcHHHhh
Confidence 121 11 145778999999998643333 35555 7999999999999999
Q ss_pred hhCCCHHHHHHHHHccccC---CCceeccCCChHHHHHHHHHhhc-----CC---CCEEE----eCCCC---c--c---c
Q 048728 190 ILGNTLGEIAGEKAGIFKY---GVPAFTVPQPEEAMRVLEENASK-----LD---VPLQV----VPPLD---A--S---L 246 (536)
Q Consensus 190 ~lG~tle~ia~~Ka~I~k~---~~~~v~~~~~~~~~~vl~~~a~~-----~~---~~l~~----~~~~~---~--~---~ 246 (536)
+|| |+|+|+++|+.||+. ++.+|+|.|++.... +...+.. .+ +++.. ..... . . .
T Consensus 165 ~~g-s~e~~~~aK~~l~~~~~~~~~~vln~Dd~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 242 (417)
T TIGR01143 165 GFG-SLEGIAEAKGEILQGLKENGIAVINADDPAFAK-FAKRLPNKAILSFGFEGGDFSAADISYSALGSTGFTLVAPGG 242 (417)
T ss_pred hcC-CHHHHHHHHHHHHcccCCCCEEEEeCCcHHHHH-HHHhccCCcEEEECCCCCcEEEEEEEEcCCCCEEEEEEeCCc
Confidence 999 999999999999974 567899999886533 3222211 00 11111 00000 0 0 0
Q ss_pred ccceecCCCcHHHHHhHHHHHHHHHHHHHhccccccccCCCCCCChHHHHHHHhcCC-CCCceeEEcCCCCCCCCCCCcE
Q 048728 247 LNGLKLGLEGEHQYMNAGLAVALSSTWLQRTSQLGINYLDTTSPLPEQFIQGLTMAN-LQGRAQIVPDRYTNSETSGDLV 325 (536)
Q Consensus 247 ~~~~~l~l~G~hq~~Na~aAia~a~~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~ 325 (536)
...+.++++|.||++|+++|++++..+ | .+++.|.++|+++. +||||| +... +++.
T Consensus 243 ~~~~~~~l~G~hn~~N~laAia~~~~l----G-----------i~~~~i~~~l~~~~~~~gR~e-~~~~-------~~~~ 299 (417)
T TIGR01143 243 EFEVSLPLLGRHNVMNALAAAALALEL----G-----------IPLEEIAEGLAELKLVKGRFE-IQTK-------NGLT 299 (417)
T ss_pred eEEEEccCCcHHHHHHHHHHHHHHHHc----C-----------CCHHHHHHHHHhCCCCCCcee-EEcC-------CCcE
Confidence 114677999999999999999999988 5 78899999999996 999999 4433 4689
Q ss_pred EEEE-CCCCHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCcccCccccCCCcEEEEEecC---CCCChhhh
Q 048728 326 FYLD-GAHSPESMEICARWFSLAIKEENQQETFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFNCM---SVRDPQLL 401 (536)
Q Consensus 326 vilD-~AHnp~si~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg~~---~drd~~~~ 401 (536)
+|+| |||||+|++++++++ +. .+ +|+|+||||+ |+++...+
T Consensus 300 vidDsya~np~s~~~al~~l----~~------------------------------~~-~r~i~VlG~~~e~G~~~~~~~ 344 (417)
T TIGR01143 300 LIDDTYNANPDSMRAALDAL----AR------------------------------FP-GKKILVLGDMAELGEYSEELH 344 (417)
T ss_pred EEEcCCCCCHHHHHHHHHHH----Hh------------------------------CC-CCEEEEEcCchhcChHHHHHH
Confidence 9999 899999999999944 33 23 5889999998 77777655
Q ss_pred hHHHHHHHHhcCCcccEEEEecC
Q 048728 402 LPSLMKTCARHGVYFKKALFVPN 424 (536)
Q Consensus 402 l~~l~~~~~~~~~~~d~~i~~~~ 424 (536)
+.|++.+.+. .+|.+|++.+
T Consensus 345 -~~l~~~~~~~--~~d~vi~~g~ 364 (417)
T TIGR01143 345 -AEVGRYANSL--GIDLVFLVGE 364 (417)
T ss_pred -HHHHHHHHHc--CCCEEEEECH
Confidence 7888888653 3699999854
No 14
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=5.1e-39 Score=349.82 Aligned_cols=253 Identities=19% Similarity=0.192 Sum_probs=190.1
Q ss_pred cCCCCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCC
Q 048728 52 AISQLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDI 131 (536)
Q Consensus 52 p~~~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~ 131 (536)
+..+.++|+||||||||||++||++||+..|.+++..++. |.|+..
T Consensus 118 ~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~~~Gni------------g~~~~~---------------------- 163 (480)
T PRK01438 118 PDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRAAAVGNI------------GTPVLD---------------------- 163 (480)
T ss_pred ccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCeEEECCc------------cHHHHH----------------------
Confidence 3346689999999999999999999999999988765543 322210
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcEEEEecccCCcccccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHccccCC-C
Q 048728 132 PMPSYFRFLALLAFKIFTAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKYG-V 210 (536)
Q Consensus 132 ~~p~~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k~~-~ 210 (536)
......+.|++|+|+|+.+. +..+++ +|+++|||||++||+|+|| |+|+|+.+|++||++. .
T Consensus 164 --------------~~~~~~~~~~~V~E~ss~~l-~~~~~i-~P~iaVITNI~~DHld~lg-t~e~ia~~K~~I~~~~~~ 226 (480)
T PRK01438 164 --------------AVRDPEGYDVLAVELSSFQL-HWSPSV-SPHSAAVLNLAPDHLDWHG-SMEAYAAAKARIYEGTTV 226 (480)
T ss_pred --------------HHhcCCCCCEEEEEcChHHh-CcCccc-CCCEEEEecCChhhccccC-CHHHHHHHHHHHHhCCCc
Confidence 01234568999999999743 455555 7999999999999999999 9999999999999976 4
Q ss_pred ceeccCCChHHHHHHHHHhhcCCCCEEEeCC-------------------CCcc--c----c-cceecCCCcHHHHHhHH
Q 048728 211 PAFTVPQPEEAMRVLEENASKLDVPLQVVPP-------------------LDAS--L----L-NGLKLGLEGEHQYMNAG 264 (536)
Q Consensus 211 ~~v~~~~~~~~~~vl~~~a~~~~~~l~~~~~-------------------~~~~--~----~-~~~~l~l~G~hq~~Na~ 264 (536)
.+|+|.|++.+..++.+.+.+.+++++.+.. +... . . ....++++|.||++|++
T Consensus 227 ~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~ 306 (480)
T PRK01438 227 ACVYNVADPATEDLVEEADVVEGARAIGFTLGTPGPSQLGVVDGILVDRAFVEDRQTSALELATLEDLRPAAPHNIANAL 306 (480)
T ss_pred eEEEeCCcHHHHHHHhhhcccCCceEEEEeCCCCCCCCceEECCEEEEEeeccccccccceeeeHHHcCCCCHHHHHHHH
Confidence 5778888887766665544333444332210 0000 0 0 01247899999999999
Q ss_pred HHHHHHHHHHHhccccccccCCCCCCChHHHHHHHhcCC-CCCceeEEcCCCCCCCCCCCcEEEEE-CCCCHHHHHHHHH
Q 048728 265 LAVALSSTWLQRTSQLGINYLDTTSPLPEQFIQGLTMAN-LQGRAQIVPDRYTNSETSGDLVFYLD-GAHSPESMEICAR 342 (536)
Q Consensus 265 aAia~a~~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~vilD-~AHnp~si~~~l~ 342 (536)
+|++++..+ | ++.+.|.++|+++. +|||||++... +++.+|+| |||||+|++++++
T Consensus 307 aAia~~~~l----g-----------i~~~~i~~~L~~~~~~~gR~E~i~~~-------~~~~iiDDs~ahNp~a~~aaL~ 364 (480)
T PRK01438 307 AAAALARSF----G-----------VPPAAVRDGLRAFRPDAHRIEHVADA-------DGVTWVDDSKATNPHAAAASLA 364 (480)
T ss_pred HHHHHHHHc----C-----------CCHHHHHHHHHhCCCCCCceEEEEEE-------CCEEEEecCccCCHHHHHHHHH
Confidence 999998877 5 77899999999997 77999999754 34555555 8999999999886
Q ss_pred HHHHHHHhhccccccCCCCCCCCCCCCCCCCcccCccccCCCcEEEEEe-cCCCCChhhhhHHHHHHHHhcCCcccEEEE
Q 048728 343 WFSLAIKEENQQETFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFN-CMSVRDPQLLLPSLMKTCARHGVYFKKALF 421 (536)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg-~~~drd~~~~l~~l~~~~~~~~~~~d~~i~ 421 (536)
. + +++++||| ...|+|...+++.|.+ .+|++++
T Consensus 365 ----~---------------------------------l--~~i~~I~gG~~~~kd~~~~~~~l~~-------~~~~vi~ 398 (480)
T PRK01438 365 ----A---------------------------------Y--PSVVWIAGGLAKGADFDDLVRRAAG-------RLRGVVL 398 (480)
T ss_pred ----h---------------------------------C--CCEEEEEecccCCCCHHHHHHHHHh-------hceEEEE
Confidence 3 2 26889996 7899999998876654 3578888
Q ss_pred ec
Q 048728 422 VP 423 (536)
Q Consensus 422 ~~ 423 (536)
++
T Consensus 399 ~g 400 (480)
T PRK01438 399 IG 400 (480)
T ss_pred EC
Confidence 74
No 15
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=6e-38 Score=339.69 Aligned_cols=213 Identities=22% Similarity=0.237 Sum_probs=163.6
Q ss_pred CCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCC
Q 048728 55 QLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMP 134 (536)
Q Consensus 55 ~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p 134 (536)
+.++|+||||||||||++||++||+..|+++.+-++. |.|+..
T Consensus 113 ~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~~~~gni------------g~~~~~------------------------- 155 (460)
T PRK01390 113 DAPFIAITGTNGKSTTTALIAHILREAGRDVQMGGNI------------GTAVLT------------------------- 155 (460)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHhcCCCeEEcCcc------------chhhhh-------------------------
Confidence 4689999999999999999999999999877543332 222110
Q ss_pred CHHHHHHHHHHHHHhhCCCcEEEEecccCCcccccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHccccCC--Cce
Q 048728 135 SYFRFLALLAFKIFTAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKYG--VPA 212 (536)
Q Consensus 135 ~~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k~~--~~~ 212 (536)
+ ....+.|++|+|+|+.+ +|.++.+ +|+++|||||++||+++|| |+|+|+.+|++|+++. .++
T Consensus 156 --------~----~~~~~~~~~V~E~~~~~-ld~t~~i-~P~iaVITNI~~DHld~lg-sle~ia~~K~~ii~~~~~~~~ 220 (460)
T PRK01390 156 --------L----EPPPAGRVYVLELSSYQ-IDLAPSL-DPDVGVLLNLTPDHLDRHG-TMEGYAAAKERLFAGQGPDTA 220 (460)
T ss_pred --------c----ccCCCCCEEEEEcCccc-ccccccc-CCCEEEEecCChhHhcccC-CHHHHHHHHHHHHhcCCCCEE
Confidence 0 01236799999999974 6999888 7999999999999999999 8999999999999987 789
Q ss_pred eccCCChHHHHHHHHHhhcCCCCEEEeCCC-C--------cc-cc---c-----cee----cCCCcHHHHHhHHHHHHHH
Q 048728 213 FTVPQPEEAMRVLEENASKLDVPLQVVPPL-D--------AS-LL---N-----GLK----LGLEGEHQYMNAGLAVALS 270 (536)
Q Consensus 213 v~~~~~~~~~~vl~~~a~~~~~~l~~~~~~-~--------~~-~~---~-----~~~----l~l~G~hq~~Na~aAia~a 270 (536)
|++.|++.+..+. ..+...+++++.+... . .. .+ . .+. ++++|.||++|+++|++++
T Consensus 221 V~n~dd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aAiaa~ 299 (460)
T PRK01390 221 VIGVDDAYCRAIA-DRLEAAGRRVVRISAGKPLADGVYADGGKLVDARGGRQVEIADLRGIPSLPGAHNAQNAAAAYAAA 299 (460)
T ss_pred EEeCCCHHHHHHH-HhccccCceEEEEeCCCCCcCceEEeCCEEEEecCCCcceeeeHHhhccCCchhHHHHHHHHHHHH
Confidence 9999888765543 3332234444332110 0 00 00 0 011 4789999999999999999
Q ss_pred HHHHHhccccccccCCCCCCChHHHHHHHhcC-CCCCceeEEcCCCCCCCCCCCcEEEEE-CCCCHHHHHHHHH
Q 048728 271 STWLQRTSQLGINYLDTTSPLPEQFIQGLTMA-NLQGRAQIVPDRYTNSETSGDLVFYLD-GAHSPESMEICAR 342 (536)
Q Consensus 271 ~~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~~-~~pGR~E~v~~~~~~~~~~~~~~vilD-~AHnp~si~~~l~ 342 (536)
..+ | ++++.|.++|++| .||||||++... ++..+|+| |||||+|++++++
T Consensus 300 ~~l----g-----------i~~~~i~~gL~~~~~~~gR~e~i~~~-------~g~~vIdDs~ahNp~s~~~aL~ 351 (460)
T PRK01390 300 RAL----G-----------LSPEEIAAGLASFPGLAHRMEQVGRR-------GGVLFVNDSKATNADAAAKALS 351 (460)
T ss_pred HHc----C-----------CCHHHHHHHHHhCCCCCCceEEEeee-------CCcEEEEcCCCCCHHHHHHHHH
Confidence 987 5 7789999999999 699999999764 35788889 8999999998776
No 16
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=4.8e-38 Score=341.95 Aligned_cols=288 Identities=20% Similarity=0.172 Sum_probs=199.5
Q ss_pred HHHHHHHHHHcCCc-ccCCCCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHH
Q 048728 37 FELLSDYLKILDLD-VAISQLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAY 115 (536)
Q Consensus 37 l~~~~~~L~~Lg~~-~p~~~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~ 115 (536)
.+++++.|.+|+.. ....++++|+||||||||||+.||+++|+..|.+++..++. |+
T Consensus 88 V~d~~~al~~la~~~~~~~~~~vIgVTGS~GKTTT~~ml~~iL~~~g~~~~~~g~~-----------n~----------- 145 (479)
T PRK14093 88 VDDVLAALRDLGRAARARLEAKVIAVTGSVGKTSTKEALRGVLGAQGETHASVASF-----------NN----------- 145 (479)
T ss_pred ECCHHHHHHHHHHHHHHhcCCCEEEEcCCCCccHHHHHHHHHHHhcCCccCCCccC-----------CC-----------
Confidence 45666676666511 22356789999999999999999999999998765544332 11
Q ss_pred HHHHHHhhhhhhcCCCCCCCHHHHHHHHHHHHHhhCCCcEEEEeccc--CCcccccccccCCcEEEEcCCCchhHhhhCC
Q 048728 116 FWWCYDRLKEKATEDIPMPSYFRFLALLAFKIFTAEQIDVAILEVGL--GGRFDATNVVQKPVVCGISSLGYDHMEILGN 193 (536)
Q Consensus 116 ~~~v~~~l~~~~~~~~~~p~~fe~lt~la~~~f~~~~~d~aVlEvg~--gg~~D~tn~i~~P~vaVITnI~~DHld~lG~ 193 (536)
.++.|. +++ . ...+++++|+|+|+ +++++......+|+++|||||++||+|+||
T Consensus 146 --------------~iG~p~-----~l~---~-~~~~~~~~V~E~g~s~~~e~~~~~~~~~PdiaViTNI~~DHLd~~g- 201 (479)
T PRK14093 146 --------------HWGVPL-----SLA---R-CPADARFAVFEIGMNHAGEIEPLVKMVRPHVAIITTVEPVHLEFFS- 201 (479)
T ss_pred --------------ccchhH-----HHH---c-CCCCCcEEEEEeCCCCCchHHHHhcccCCCEEEEcCCCHHHHhhcC-
Confidence 011121 111 1 23578999999997 445544333348999999999999999999
Q ss_pred CHHHHHHHHHcccc---CCCceeccCCChHHHHHHHHHhhcC------------CCCEEEeC----C----CCc---ccc
Q 048728 194 TLGEIAGEKAGIFK---YGVPAFTVPQPEEAMRVLEENASKL------------DVPLQVVP----P----LDA---SLL 247 (536)
Q Consensus 194 tle~ia~~Ka~I~k---~~~~~v~~~~~~~~~~vl~~~a~~~------------~~~l~~~~----~----~~~---~~~ 247 (536)
|+|+|+.+|..||+ +++.+|+|.||+....... .+... .+++.... . +.. ...
T Consensus 202 t~e~~~~aK~~l~~~~~~~g~~VlN~Dd~~~~~l~~-~~~~~~~~~vi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (479)
T PRK14093 202 GIEAIADAKAEIFTGLEPGGAAVLNRDNPQFDRLAA-SARAAGIARIVSFGADEKADARLLDVALHADCSAVHADILGHD 280 (479)
T ss_pred CHHHHHHHHHHHHccCCCCCEEEEeCCcHHHHHHHH-HhhhccCCcEEEEeCCCCccEEEEEEEEcCCceEEEEEECCce
Confidence 99999999999994 5567899999987644332 22110 11111100 0 000 001
Q ss_pred cceecCCCcHHHHHhHHHHHHHHHHHHHhccccccccCCCCCCChHHHHHHHhcCC-CCCceeEEcCCCCCCCCCCCcEE
Q 048728 248 NGLKLGLEGEHQYMNAGLAVALSSTWLQRTSQLGINYLDTTSPLPEQFIQGLTMAN-LQGRAQIVPDRYTNSETSGDLVF 326 (536)
Q Consensus 248 ~~~~l~l~G~hq~~Na~aAia~a~~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~v 326 (536)
..++++++|.||++|+++|++++..+ | .++++|.++|++|. +|||+|.+.... .+++..+
T Consensus 281 ~~~~l~l~G~hnv~NalaAia~a~~l----G-----------i~~~~i~~~l~~~~~~~gR~~~~r~~~----~~~~~~i 341 (479)
T PRK14093 281 VTYKLGMPGRHIAMNSLAVLAAAELA----G-----------ADLALAALALSQVQPAAGRGVRHTLEV----GGGEATL 341 (479)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHHHc----C-----------CCHHHHHHHHHhCCCcCCcceEEEeec----CCCCEEE
Confidence 24778999999999999999999988 5 78899999999995 899999875310 0023445
Q ss_pred EEE-CCCCHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCcccCccccCCCcEEEEEecCCCC--ChhhhhH
Q 048728 327 YLD-GAHSPESMEICARWFSLAIKEENQQETFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFNCMSVR--DPQLLLP 403 (536)
Q Consensus 327 ilD-~AHnp~si~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg~~~dr--d~~~~l~ 403 (536)
|+| |||||+||+++++++++.- . .+.+|+|+|||.|.+. ...+.+.
T Consensus 342 IDDsYahnP~s~~aaL~~l~~~~-~------------------------------~~~~r~i~V~G~m~elg~~~~~~h~ 390 (479)
T PRK14093 342 IDESYNANPASMAAALGVLGRAP-V------------------------------GPQGRRIAVLGDMLELGPRGPELHR 390 (479)
T ss_pred EECCCCCCHHHHHHHHHHHHhhh-c------------------------------cCCCCEEEEECChHHcCcHHHHHHH
Confidence 555 9999999999999555410 0 1346899999997443 3556678
Q ss_pred HHHHHHHhcCCcccEEEEec
Q 048728 404 SLMKTCARHGVYFKKALFVP 423 (536)
Q Consensus 404 ~l~~~~~~~~~~~d~~i~~~ 423 (536)
.+++.+.+. .+|.++++.
T Consensus 391 ~~~~~~~~~--~~d~v~~~G 408 (479)
T PRK14093 391 GLAEAIRAN--AIDLVFCCG 408 (479)
T ss_pred HHHHHHHHc--CCCEEEEEc
Confidence 888888653 489999974
No 17
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.1e-37 Score=336.64 Aligned_cols=253 Identities=17% Similarity=0.210 Sum_probs=185.7
Q ss_pred CCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCC
Q 048728 55 QLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMP 134 (536)
Q Consensus 55 ~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p 134 (536)
+.++|+||||||||||++||++||+++|+++.+-++. |.|.
T Consensus 107 ~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggni------------g~p~--------------------------- 147 (448)
T PRK03803 107 KAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNI------------GTPA--------------------------- 147 (448)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCc------------CHHH---------------------------
Confidence 3479999999999999999999999999876654432 2111
Q ss_pred CHHHHHHHHHHHHHhhCCCcEEEEecccCCcccccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHccccCCCceec
Q 048728 135 SYFRFLALLAFKIFTAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKYGVPAFT 214 (536)
Q Consensus 135 ~~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k~~~~~v~ 214 (536)
+. ....+.|++|+|+|+.+ ++.++.+ +|+++|||||++||+|+|| |+|+|+.+|++|++....+|+
T Consensus 148 -----~~------~~~~~~~~~V~E~ss~~-l~~~~~~-~P~iaVITNI~~DHld~~g-s~e~~~~~K~~i~~~~~~~V~ 213 (448)
T PRK03803 148 -----LD------LLSDDPELYVLELSSFQ-LETTHSL-NAEVATVLNISEDHMDRYS-DLEAYHQAKHRIYRGAKQVVF 213 (448)
T ss_pred -----HH------HhcCCCCEEEEEcChhh-hCcCccc-CccEEEEecCChhHcccCC-CHHHHHHHHHHHHhCCCeEEE
Confidence 00 11235799999999864 4778877 7999999999999999999 899999999999998888999
Q ss_pred cCCChHHHHHHHHHhh--cCCC------CEEEeC-C---CCcc--c--ccceecCCCcHHHHHhHHHHHHHHHHHHHhcc
Q 048728 215 VPQPEEAMRVLEENAS--KLDV------PLQVVP-P---LDAS--L--LNGLKLGLEGEHQYMNAGLAVALSSTWLQRTS 278 (536)
Q Consensus 215 ~~~~~~~~~vl~~~a~--~~~~------~l~~~~-~---~~~~--~--~~~~~l~l~G~hq~~Na~aAia~a~~ll~~~g 278 (536)
+.|++....+....++ ..+. .+.+.. . +... . ...++++++|.||++|+++|++++..+ |
T Consensus 214 n~dd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~l----g 289 (448)
T PRK03803 214 NRDDALTRPLVPDNQPCLSFGLNAPDFDEWGLREGDGETYLAHGFERLMPVRELKLRGSHNLANALAALALGEAA----G 289 (448)
T ss_pred eCCCHHHHHHhhcCCcEEEEeCCCCCcCceEEEecCCeEEEEeCCceEEehhccCCCCHHHHHHHHHHHHHHHHc----C
Confidence 9998876544321100 0000 010000 0 0000 0 112568899999999999999999988 5
Q ss_pred ccccccCCCCCCChHHHHHHHhcCC-CCCceeEEcCCCCCCCCCCCcEEEEEC-CCCHHHHHHHHHHHHHHHHhhccccc
Q 048728 279 QLGINYLDTTSPLPEQFIQGLTMAN-LQGRAQIVPDRYTNSETSGDLVFYLDG-AHSPESMEICARWFSLAIKEENQQET 356 (536)
Q Consensus 279 ~~~~~~~~~~~~~~~~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~vilD~-AHnp~si~~~l~~~~~~~~~~~~~~~ 356 (536)
.+++.|.++|++|. ||||||++... +++.+|+|+ ||||+|+.++++.| +.
T Consensus 290 -----------i~~~~i~~~L~~f~g~~~R~e~v~~~-------~gv~~idDs~atN~~a~~~al~~l----~~------ 341 (448)
T PRK03803 290 -----------LPKEAMLEVLRTFTGLPHRCEWVREV-------AGVDYYNDSKGTNVGATVAAIEGL----GA------ 341 (448)
T ss_pred -----------CCHHHHHHHHhhCCCCCCceEEEEEe-------CCeEEEEcCCcCCHHHHHHHHHhh----hh------
Confidence 78899999999985 99999999754 467889996 99999999999843 22
Q ss_pred cCCCCCCCCCCCCCCCCcccCccccCCCcEEEEEecC-CCCChhhhhHHHHHHHHhcCCcccEEEEec
Q 048728 357 FDFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFNCM-SVRDPQLLLPSLMKTCARHGVYFKKALFVP 423 (536)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg~~-~drd~~~~l~~l~~~~~~~~~~~d~~i~~~ 423 (536)
..++++++|||++ .++|+..+.+.+.+ .++.++++.
T Consensus 342 ------------------------~~~~~iilI~Gg~~k~~d~~~l~~~l~~-------~~~~vil~G 378 (448)
T PRK03803 342 ------------------------HIQGKLVLIAGGDGKGADFSPLREPVAK-------YVRAVVLIG 378 (448)
T ss_pred ------------------------cCCCCEEEEECCCCCCCCHHHHHHHHHh-------hCCEEEEEC
Confidence 1235789999984 66787776544432 356676653
No 18
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=100.00 E-value=4e-37 Score=333.38 Aligned_cols=313 Identities=17% Similarity=0.192 Sum_probs=209.8
Q ss_pred CcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCCC
Q 048728 56 LKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMPS 135 (536)
Q Consensus 56 l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p~ 135 (536)
.++|+||||||||||++|+.+||+.+|++...+. .|.... .+.+
T Consensus 107 ~~~I~ITGTnGKTTTt~ll~~iL~~~g~~~~~~~-------------gg~~~~----------------------~~~~- 150 (461)
T PRK00421 107 RTSIAVAGTHGKTTTTSLLAHVLAEAGLDPTFLI-------------GGILNA----------------------AGTN- 150 (461)
T ss_pred CcEEEEECCCCHHHHHHHHHHHHHhcCCCCeEEE-------------Cceecc----------------------CCcc-
Confidence 3799999999999999999999999997532221 111000 0001
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEecccCCcccccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHccc---cCCCce
Q 048728 136 YFRFLALLAFKIFTAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIF---KYGVPA 212 (536)
Q Consensus 136 ~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~---k~~~~~ 212 (536)
+...+.|++|+|+|+... .... .+|+++|||||++||+|+|| |+|+|+.+|..++ +++..+
T Consensus 151 ------------~~~~~~~~~V~E~ss~q~-~~~~--~~p~vaViTNI~~DHld~~g-t~e~y~~ak~k~~~~~~~~~~~ 214 (461)
T PRK00421 151 ------------ARLGNSDYFVAEADESDR-SFLK--LHPDIAIVTNIDADHLDYYG-DFEDLKDAFQEFAHNLPFYGAL 214 (461)
T ss_pred ------------cccCCCCEEEEECCCccc-hHhh--cCCCEEEEccCChhhccccC-CHHHHHHHHHHHHhcCCCCCEE
Confidence 011357999999998532 1122 28999999999999999999 9999998887765 445678
Q ss_pred eccCCChHHHHHHHHHhhcCCCCEEEeC--------------CCCc---------ccccceecCCCcHHHHHhHHHHHHH
Q 048728 213 FTVPQPEEAMRVLEENASKLDVPLQVVP--------------PLDA---------SLLNGLKLGLEGEHQYMNAGLAVAL 269 (536)
Q Consensus 213 v~~~~~~~~~~vl~~~a~~~~~~l~~~~--------------~~~~---------~~~~~~~l~l~G~hq~~Na~aAia~ 269 (536)
|++.|++....+..... +++..+. .... ..+..+.++++|.||++|+++|+++
T Consensus 215 V~n~dd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~h~~~N~~aA~a~ 290 (461)
T PRK00421 215 VACGDDPELRELLPRVS----RPVITYGFSEDADFRAENIRQDGGGTHFDVLRRGEVLGDFTLPLPGRHNVLNALAAIAV 290 (461)
T ss_pred EEECCCHHHHHHHHhcC----CCEEEecCCCCCcEEEEEEEEcCCceEEEEEECCceEEEEEecCCcHHHHHHHHHHHHH
Confidence 88888887655443221 2222111 0000 0011367889999999999999999
Q ss_pred HHHHHHhccccccccCCCCCCChHHHHHHHhcC-CCCCceeEEcCCCCCCCCCCCcEEEEECCCCHHHHHHHHHHHHHHH
Q 048728 270 SSTWLQRTSQLGINYLDTTSPLPEQFIQGLTMA-NLQGRAQIVPDRYTNSETSGDLVFYLDGAHSPESMEICARWFSLAI 348 (536)
Q Consensus 270 a~~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~~-~~pGR~E~v~~~~~~~~~~~~~~vilD~AHnp~si~~~l~~~~~~~ 348 (536)
+..+ | ++++.|.++|++| .||||||++... +++.||+||||||++++++++ ++
T Consensus 291 ~~~l----g-----------v~~~~i~~~l~~f~~~~~R~e~~~~~-------~g~~~i~D~aHnp~~~~a~~~----al 344 (461)
T PRK00421 291 ALEL----G-----------IDDEAIREALATFKGVKRRFEEKGEV-------GGVVLIDDYAHHPTEIKATLK----AA 344 (461)
T ss_pred HHHc----C-----------CCHHHHHHHHHhCCCCCcccEEEEec-------CCcEEEEeCCCCHHHHHHHHH----HH
Confidence 9888 5 7789999999998 599999999765 468899999999999999999 44
Q ss_pred HhhccccccCCCCCCCCCCCCCCCCcccCccccCCCcEEEEEecC-CCCChhhhhHHHHHHHHhcCCcccEEEEecCCcc
Q 048728 349 KEENQQETFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFNCM-SVRDPQLLLPSLMKTCARHGVYFKKALFVPNASV 427 (536)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg~~-~drd~~~~l~~l~~~~~~~~~~~d~~i~~~~~~~ 427 (536)
+.. ++.+++++|||.. ..||.... ..|.+.. + .+|.+++++..
T Consensus 345 ~~~-----------------------------~~~~~i~~v~gp~~~~r~kd~~-~~~~~~l-~---~~d~vi~~~~~-- 388 (461)
T PRK00421 345 RQG-----------------------------YPDKRIVAVFQPHRYSRTRDLL-DEFAEAL-S---DADEVILLDIY-- 388 (461)
T ss_pred Hhh-----------------------------CCCCeEEEEECCCCCccHHHHH-HHHHHHH-H---HCCEEEEcCcc--
Confidence 441 2346889999832 23443322 3344444 2 47899988542
Q ss_pred cccCCCCCCCCCcchhchhHHHHHHHHHHHhccCccccccccCCCCccccccccccccCCCCCceEeCCHHHHHHHHHHH
Q 048728 428 YNKVGSHALPPTETQIDLSWQFALQRVWENLMLGDKAVEAKNTDNASEDVKDYTELSARSCENSAVFSSLPLAIKWLRDS 507 (536)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~q~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~Ai~~~~~~ 507 (536)
+++... .+....+ .+.+.|++. ..++..++++++|++++.+.
T Consensus 389 --~~~e~~------~~~~~~~-~l~~~~~~~-----------------------------~~~~~~~~~~~~a~~~a~~~ 430 (461)
T PRK00421 389 --AAGEEP------IGGVDSE-DLARKIKRG-----------------------------HRDPIFVPDLEDLAELLAEV 430 (461)
T ss_pred --CCCCCC------CCCCCHH-HHHHHHhcc-----------------------------CCceEEeCCHHHHHHHHHHh
Confidence 122110 0111111 233333220 11355789999999999887
Q ss_pred hhhcCCCCceEEEeCchhhHH
Q 048728 508 VQQNQSLRFQVLVTGSLHLIG 528 (536)
Q Consensus 508 ~~~~~~~~~~VLvtGSl~LVG 528 (536)
++++ +.|||+|+-++-+
T Consensus 431 a~~g----D~vlv~G~g~~~~ 447 (461)
T PRK00421 431 LKPG----DLVLTMGAGDITK 447 (461)
T ss_pred cCCC----CEEEEECCCCHHH
Confidence 6554 3899999988533
No 19
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=100.00 E-value=2e-37 Score=334.98 Aligned_cols=279 Identities=20% Similarity=0.218 Sum_probs=197.4
Q ss_pred HHHHHHHHcCCc-ccCCCCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHHH
Q 048728 39 LLSDYLKILDLD-VAISQLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFW 117 (536)
Q Consensus 39 ~~~~~L~~Lg~~-~p~~~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~~ 117 (536)
+++..|..|+.. ......++|+||||||||||+.||++||+..|..+ .++. +++..+ |.
T Consensus 82 d~~~al~~la~~~~~~~~~~vI~VTGSnGKTTT~~ml~~iL~~~g~~~---~t~g--n~n~~~---G~------------ 141 (453)
T PRK10773 82 DTRLAFGQLAAWVRQQVPARVVALTGSSGKTSVKEMTAAILRQCGNTL---YTAG--NLNNDI---GV------------ 141 (453)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEcCCCchHHHHHHHHHHHHhcCccc---ccCc--cccCCc---cc------------
Confidence 445555555311 12224689999999999999999999999988753 2331 111111 11
Q ss_pred HHHHhhhhhhcCCCCCCCHHHHHHHHHHHHHhhCCCcEEEEeccc--CCcccccccccCCcEEEEcCCCchhHhhhCCCH
Q 048728 118 WCYDRLKEKATEDIPMPSYFRFLALLAFKIFTAEQIDVAILEVGL--GGRFDATNVVQKPVVCGISSLGYDHMEILGNTL 195 (536)
Q Consensus 118 ~v~~~l~~~~~~~~~~p~~fe~lt~la~~~f~~~~~d~aVlEvg~--gg~~D~tn~i~~P~vaVITnI~~DHld~lG~tl 195 (536)
|. +++ ....++|++|+|+|+ .|+++..-.+.+|+++|||||++||+|+|| |+
T Consensus 142 ----------------~~-----~~~----~~~~~~~~~V~E~g~~~~gei~~~~~~~~p~iaViTNI~~dHld~~g-s~ 195 (453)
T PRK10773 142 ----------------PL-----TLL----RLTPEHDYAVIELGANHQGEIAYTVSLTRPEAALVNNLAAAHLEGFG-SL 195 (453)
T ss_pred ----------------cc-----HHh----cCCCCCcEEEEEcCCCCcchhHHhcCccCCCEEEEeCCCHHHHhhcC-CH
Confidence 21 010 123468999999997 467665444448999999999999999999 99
Q ss_pred HHHHHHHHcccc---CCCceeccCCChHHHHHHHHHhhc-----C------CCCEEEeC----C----CCc---ccccce
Q 048728 196 GEIAGEKAGIFK---YGVPAFTVPQPEEAMRVLEENASK-----L------DVPLQVVP----P----LDA---SLLNGL 250 (536)
Q Consensus 196 e~ia~~Ka~I~k---~~~~~v~~~~~~~~~~vl~~~a~~-----~------~~~l~~~~----~----~~~---~~~~~~ 250 (536)
|+|+.+|+.||+ +++.+|+|.|++....... .... . .+++.... . +.. .....+
T Consensus 196 e~~~~aK~~l~~~~~~~g~~vln~Dd~~~~~~~~-~~~~~~~~~~g~~~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~ 274 (453)
T PRK10773 196 AGVAKAKGEIFSGLPENGIAIMNADSNDWLNWQS-VIGSKTVWRFSPNAANSVDFTATNIHVTSHGTEFTLHTPTGSVDV 274 (453)
T ss_pred HHHHHHHHHHHcccCCCCEEEEECCcHhHHHHHH-HhcCCcEEEEeCCCCCcCcEEEEEEEEeCCeeEEEEEecCceEEE
Confidence 999999999996 3467899999876533322 1111 0 12222110 0 000 001246
Q ss_pred ecCCCcHHHHHhHHHHHHHHHHHHHhccccccccCCCCCCChHHHHHHHhcCC-CCCceeEEcCCCCCCCCCCCcEEEEE
Q 048728 251 KLGLEGEHQYMNAGLAVALSSTWLQRTSQLGINYLDTTSPLPEQFIQGLTMAN-LQGRAQIVPDRYTNSETSGDLVFYLD 329 (536)
Q Consensus 251 ~l~l~G~hq~~Na~aAia~a~~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~vilD 329 (536)
.++++|.||++|+++|++++..+ | ++++.|.++|++|. +|||||.+... ++..+|+|
T Consensus 275 ~l~l~G~hnv~NalaAia~a~~l----G-----------i~~~~i~~~L~~~~~~~gR~e~v~~~-------~g~~iIDD 332 (453)
T PRK10773 275 LLPLPGRHNIANALAAAALAMSV----G-----------ATLDAVKAGLANLKAVPGRLFPIQLA-------EGQLLLDD 332 (453)
T ss_pred EecCCcHhHHHHHHHHHHHHHHc----C-----------CCHHHHHHHHHhCCCCCCceeEEECC-------CCeEEEEc
Confidence 88999999999999999999988 5 78899999999995 99999998754 45777777
Q ss_pred -CCCCHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCcccCccccCCCcEEEEEecCCC--CChhhhhHHHH
Q 048728 330 -GAHSPESMEICARWFSLAIKEENQQETFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFNCMSV--RDPQLLLPSLM 406 (536)
Q Consensus 330 -~AHnp~si~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg~~~d--rd~~~~l~~l~ 406 (536)
|+|||+||+++++ .++. + .+|+|+|||.|.+ ....++++.++
T Consensus 333 sYn~nP~s~~aaL~----~l~~------------------------------~-~~r~i~VlG~m~elG~~~~~~h~~~~ 377 (453)
T PRK10773 333 SYNANVGSMTAAAQ----VLAE------------------------------M-PGYRVMVVGDMAELGAESEACHRQVG 377 (453)
T ss_pred CCCCCHHHHHHHHH----HHHh------------------------------C-CCCEEEEECChhhcchHHHHHHHHHH
Confidence 8999999999999 4443 2 2477999998766 35667788899
Q ss_pred HHHHhcCCcccEEEEec
Q 048728 407 KTCARHGVYFKKALFVP 423 (536)
Q Consensus 407 ~~~~~~~~~~d~~i~~~ 423 (536)
+.+.+. .+|.++++.
T Consensus 378 ~~~~~~--~~d~v~~~G 392 (453)
T PRK10773 378 EAAKAA--GIDKVLSVG 392 (453)
T ss_pred HHHHHc--CCCEEEEEC
Confidence 888764 489999874
No 20
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=3.4e-37 Score=332.51 Aligned_cols=249 Identities=18% Similarity=0.207 Sum_probs=185.4
Q ss_pred CCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCC
Q 048728 55 QLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMP 134 (536)
Q Consensus 55 ~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p 134 (536)
+.++|+||||||||||+.||+++|+..|.++.+.++. |.|+...
T Consensus 109 ~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~Gni------------G~~~~~~------------------------ 152 (445)
T PRK04308 109 GDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNI------------GTPVLEA------------------------ 152 (445)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHHHcCCCeEEeCCc------------cHHHHHH------------------------
Confidence 3579999999999999999999999999877555543 3332110
Q ss_pred CHHHHHHHHHHHHHhhCCCcEEEEecccCCcccccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHccccCCCceec
Q 048728 135 SYFRFLALLAFKIFTAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKYGVPAFT 214 (536)
Q Consensus 135 ~~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k~~~~~v~ 214 (536)
+ ..-...+.|++|+|+|++ +++.++.+ +|+++|||||++||+++|| |+|+|+.+|++|++++..+|+
T Consensus 153 --------~--~~~~~~~~d~~VlE~~~~-~l~~~~~~-~p~iaviTNI~~DHld~~~-t~e~~~~~K~~i~~~~~~~i~ 219 (445)
T PRK04308 153 --------E--LQREGKKADVWVLELSSF-QLENTESL-RPTAATVLNISEDHLDRYD-DLLDYAHTKAKIFRGDGVQVL 219 (445)
T ss_pred --------H--HhhcCCCCcEEEEEeChH-HhCcCccc-CCCEEEEecCChHHhcccC-CHHHHHHHHHHHhcCCCEEEE
Confidence 0 000124689999999974 66778777 7999999999999999999 999999999999998888999
Q ss_pred cCCChHHHHHHHHHhhcCCCCEEEeCC-----C-----C------cccc-cceecCCCcHHHHHhHHHHHHHHHHHHHhc
Q 048728 215 VPQPEEAMRVLEENASKLDVPLQVVPP-----L-----D------ASLL-NGLKLGLEGEHQYMNAGLAVALSSTWLQRT 277 (536)
Q Consensus 215 ~~~~~~~~~vl~~~a~~~~~~l~~~~~-----~-----~------~~~~-~~~~l~l~G~hq~~Na~aAia~a~~ll~~~ 277 (536)
+.|++....... .++++..+.. + . .... ..+.++++|.||++|+++|++++..+
T Consensus 220 n~dd~~~~~~~~-----~~~~v~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~l---- 290 (445)
T PRK04308 220 NADDAFCRAMKR-----AGREVKWFSLEHEADFWLERETGRLKQGNEDLIATQDIPLQGLHNAANVMAAVALCEAV---- 290 (445)
T ss_pred eCCcHHHHHHhh-----cCCcEEEecCCCCCceeEeccCCEEEEcCceeeehhccCCcChhhHHHHHHHHHHHHHc----
Confidence 988876533221 1222222210 0 0 0001 12568999999999999999999988
Q ss_pred cccccccCCCCCCChHHHHHHHhcCC-CCCceeEEcCCCCCCCCCCCcEEEEEC-CCCHHHHHHHHHHHHHHHHhhcccc
Q 048728 278 SQLGINYLDTTSPLPEQFIQGLTMAN-LQGRAQIVPDRYTNSETSGDLVFYLDG-AHSPESMEICARWFSLAIKEENQQE 355 (536)
Q Consensus 278 g~~~~~~~~~~~~~~~~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~vilD~-AHnp~si~~~l~~~~~~~~~~~~~~ 355 (536)
| .+++.|.++|++|. ||||||++... ++..+|+|+ +|||+|+.++++ .
T Consensus 291 g-----------i~~~~i~~~L~~f~~~~~R~e~~~~~-------~~~~~iDDs~~~n~~s~~~al~----~-------- 340 (445)
T PRK04308 291 G-----------LPREALLEHVKTFQGLPHRVEKIGEK-------NGVVFIDDSKGTNVGATAAAIA----G-------- 340 (445)
T ss_pred C-----------CCHHHHHHHHhhCCCCCCceEEEEee-------CCeEEEEcCCCCCHHHHHHHHH----h--------
Confidence 5 77899999999995 99999999764 456777775 899999999887 3
Q ss_pred ccCCCCCCCCCCCCCCCCcccCccccCCCcEEEEEecC-CCCChhhhhHHHHHHHHhcCCcccEEEEecC
Q 048728 356 TFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFNCM-SVRDPQLLLPSLMKTCARHGVYFKKALFVPN 424 (536)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg~~-~drd~~~~l~~l~~~~~~~~~~~d~~i~~~~ 424 (536)
+ .+++++|||.+ .++|+..+...+. + .+|.++++..
T Consensus 341 -------------------------~-~~~~i~IlGg~~~~~~~~~~~~~l~----~---~~~~vil~G~ 377 (445)
T PRK04308 341 -------------------------L-QNPLFVILGGMGKGQDFTPLRDALA----G---KAKGVFLIGV 377 (445)
T ss_pred -------------------------C-CCCEEEEeCCCCCCCCHHHHHHHHH----H---hCcEEEEECC
Confidence 2 23689999865 6778777654432 2 3688887653
No 21
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=1.1e-36 Score=356.52 Aligned_cols=330 Identities=20% Similarity=0.190 Sum_probs=230.3
Q ss_pred HHHHHHHHHHcCCc-ccCCCCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHH
Q 048728 37 FELLSDYLKILDLD-VAISQLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAY 115 (536)
Q Consensus 37 l~~~~~~L~~Lg~~-~p~~~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~ 115 (536)
.++++++|..|+.. ....+.++|+||||||||||+.||.+||+.+|.+...+.++. +++.
T Consensus 583 V~d~~~al~~la~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~~~~~~~~~~t~g--n~n~----------------- 643 (958)
T PRK11929 583 VDDTRAALGRLATAWRARFSLPVVAITGSNGKTTTKEMIAAILAAWQGEDRVLATEG--NFNN----------------- 643 (958)
T ss_pred eCCHHHHHHHHHHHHHhcCCCcEEEEeCCCchHHHHHHHHHHHHhcCCCCcEEccCc--ccCC-----------------
Confidence 45667777766521 122356899999999999999999999999976666666662 1110
Q ss_pred HHHHHHhhhhhhcCCCCCCCHHHHHHHHHHHHHhhCCCcEEEEecccC--CcccccccccCCcEEEEcCCCchhHhhhCC
Q 048728 116 FWWCYDRLKEKATEDIPMPSYFRFLALLAFKIFTAEQIDVAILEVGLG--GRFDATNVVQKPVVCGISSLGYDHMEILGN 193 (536)
Q Consensus 116 ~~~v~~~l~~~~~~~~~~p~~fe~lt~la~~~f~~~~~d~aVlEvg~g--g~~D~tn~i~~P~vaVITnI~~DHld~lG~ 193 (536)
..+.| ++++ -.+.+.|++|+|+|+. |+++.+.-+.+|+++|||||++||+|+||
T Consensus 644 --------------~~g~~-----~~l~----~~~~~~~~~VlE~s~~~~g~~~~~~~~~~pdiaViTNI~~dHLd~~~- 699 (958)
T PRK11929 644 --------------EIGVP-----LTLL----RLRAQHRAAVFELGMNHPGEIAYLAAIAAPTVALVTNAQREHQEFMH- 699 (958)
T ss_pred --------------CcchH-----HHHh----cCCCCCcEEEEEeCCCCCccHHHHhCccCCCEEEEcCCcHHHhhhcC-
Confidence 01112 1111 1246789999999985 46666544458999999999999999999
Q ss_pred CHHHHHHHHHcccc---CCCceeccCCChHHHHHHHHHhhcC---------CCCEEEe---CCC---Ccc----------
Q 048728 194 TLGEIAGEKAGIFK---YGVPAFTVPQPEEAMRVLEENASKL---------DVPLQVV---PPL---DAS---------- 245 (536)
Q Consensus 194 tle~ia~~Ka~I~k---~~~~~v~~~~~~~~~~vl~~~a~~~---------~~~l~~~---~~~---~~~---------- 245 (536)
|+|+|+.+|+.||+ +++.+|+|.|++..... ...+... ..++... ..+ ...
T Consensus 700 s~e~y~~aK~~i~~~~~~~~~~Vln~Dd~~~~~~-~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (958)
T PRK11929 700 SVEAVARAKGEIIAALPEDGVAVVNGDDPYTAIW-AKLAGARRVLRFGLQPGADVYAEKIAKDISVGEAGGTRCQVVTPA 778 (958)
T ss_pred CHHHHHHHHHHHHccCCCCCEEEEECCcHHHHHH-HHhhcCCcEEEEeCCCCcceEeeecccceeecCCCceEEEEEECC
Confidence 99999999999995 45678899988765333 2222111 0111110 000 000
Q ss_pred cccceecCCCcHHHHHhHHHHHHHHHHHHHhccccccccCCCCCCChHHHHHHHhcCC-CCCceeEEcCCCCCCCCCCCc
Q 048728 246 LLNGLKLGLEGEHQYMNAGLAVALSSTWLQRTSQLGINYLDTTSPLPEQFIQGLTMAN-LQGRAQIVPDRYTNSETSGDL 324 (536)
Q Consensus 246 ~~~~~~l~l~G~hq~~Na~aAia~a~~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~ 324 (536)
....+.++++|.||++|+++|++++..+ | .+++.|.++|++|. +|||||.+... ++.
T Consensus 779 ~~~~~~l~l~G~hnv~NalaAia~a~~l----G-----------i~~~~i~~~L~~f~~~~gR~e~~~~~-------~~~ 836 (958)
T PRK11929 779 GSAEVYLPLIGEHNLRNALAAIACALAA----G-----------ASLKQIRAGLERFQPVAGRMQRRRLS-------CGT 836 (958)
T ss_pred ceEEEEeCCCcHHHHHHHHHHHHHHHHc----C-----------CCHHHHHHHHhhCCCCCCCceEEEcC-------CCc
Confidence 0123578999999999999999999988 5 78899999999996 99999999764 468
Q ss_pred EEEEE-CCCCHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCcccCccccCCCcEEEEEecCCC-CChhhhh
Q 048728 325 VFYLD-GAHSPESMEICARWFSLAIKEENQQETFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFNCMSV-RDPQLLL 402 (536)
Q Consensus 325 ~vilD-~AHnp~si~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg~~~d-rd~~~~l 402 (536)
.+|+| |||||+|++++++.| +. ++.+++|+|||++++ +|..++.
T Consensus 837 ~iidDsya~np~s~~aaL~~l----~~------------------------------~~~~~~i~VlG~~~e~g~~~~~~ 882 (958)
T PRK11929 837 RIIDDTYNANPDSMRAAIDVL----AE------------------------------LPNGPRALVLGDMLELGDNGPAM 882 (958)
T ss_pred EEEEcCCCCCHHHHHHHHHHH----Hh------------------------------ccCCCEEEEECCchhcCcHHHHH
Confidence 89999 899999999999944 33 233588999999987 6776664
Q ss_pred -HHHHHHHHhcCCcccEEEEecCCcccccCCCCCCCCCcchhchhHHHHHHHHHHHhccCccccccccCCCCcccccccc
Q 048728 403 -PSLMKTCARHGVYFKKALFVPNASVYNKVGSHALPPTETQIDLSWQFALQRVWENLMLGDKAVEAKNTDNASEDVKDYT 481 (536)
Q Consensus 403 -~~l~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 481 (536)
+.|++.+.+. .+|.+++.... . + .+.+.+..+
T Consensus 883 h~~~g~~~~~~--~~~~vi~~Ge~--------------~-------~----~i~~~~~~~-------------------- 915 (958)
T PRK11929 883 HREVGKYARQL--GIDALITLGEA--------------A-------R----DAAAAFGAG-------------------- 915 (958)
T ss_pred HHHHHHHHHHc--CCCEEEEECcC--------------H-------H----HHHHhhhcc--------------------
Confidence 6787777553 36777765321 1 1 122222110
Q ss_pred ccccCCCCCceEeCCHHHHHHHHHHHhhhcCCCCceEEEeCchh
Q 048728 482 ELSARSCENSAVFSSLPLAIKWLRDSVQQNQSLRFQVLVTGSLH 525 (536)
Q Consensus 482 ~~~~~~~~~~~v~~si~~Ai~~~~~~~~~~~~~~~~VLvtGSl~ 525 (536)
....++++++|++++...+++++ .||+.||..
T Consensus 916 --------~~~~~~~~~~a~~~~~~~~~~gD----~VLlkGSr~ 947 (958)
T PRK11929 916 --------ARGVCASVDEIIAALRGALPEGD----SVLIKGSRF 947 (958)
T ss_pred --------cceeeCCHHHHHHHHHHhcCCCC----EEEEEeCcc
Confidence 01237899999999988776554 899999964
No 22
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1e-36 Score=329.80 Aligned_cols=251 Identities=17% Similarity=0.150 Sum_probs=187.7
Q ss_pred CCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCC
Q 048728 55 QLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMP 134 (536)
Q Consensus 55 ~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p 134 (536)
+.++|+||||||||||++||.+||+.+|+++...++. |.|.+...
T Consensus 108 ~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~~~~gni------------G~~~~~~~----------------------- 152 (459)
T PRK02705 108 HIPWVGITGTNGKTTVTALLAHILQAAGLNAPACGNI------------GYAACELA----------------------- 152 (459)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEeccc------------ChhHHHHH-----------------------
Confidence 4579999999999999999999999999877654332 33322100
Q ss_pred CHHHHHHHHHHHHHhhCCCcEEEEecccCCcccccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHccccCCCceec
Q 048728 135 SYFRFLALLAFKIFTAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKYGVPAFT 214 (536)
Q Consensus 135 ~~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k~~~~~v~ 214 (536)
. +......+.|++|+|+|+ ++++.++.+ +|+++|||||++||+++|| |+|+|+.+|++|++++.++|+
T Consensus 153 -------~--~~~~~~~~~d~~VlE~~s-~~l~~~~~~-~p~iaVITNI~~DHld~~g-t~e~~~~~K~~i~~~~~~~Vl 220 (459)
T PRK02705 153 -------L--LRSGKAQKPDWIVAELSS-YQIESSPEL-APKIGIWTTFTPDHLERHG-TLENYFAIKASLLERSEIRIL 220 (459)
T ss_pred -------h--hhhccCCCCCEEEEEccc-cccccCccc-CCCEEEEecCChhhhcccC-CHHHHHHHHHHHhccCCEEEE
Confidence 0 001124578999999999 467777775 7999999999999999999 999999999999999889999
Q ss_pred cCCChHHHHHHHHHhhcCCCCEEEe-C-C----------C--C------ccc-ccceecCCCcHHHHHhHHHHHHHHHHH
Q 048728 215 VPQPEEAMRVLEENASKLDVPLQVV-P-P----------L--D------ASL-LNGLKLGLEGEHQYMNAGLAVALSSTW 273 (536)
Q Consensus 215 ~~~~~~~~~vl~~~a~~~~~~l~~~-~-~----------~--~------~~~-~~~~~l~l~G~hq~~Na~aAia~a~~l 273 (536)
+.|++....+..... ..+... . . + . ... .....++++|.||++|+++|++++..+
T Consensus 221 n~dd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~l 296 (459)
T PRK02705 221 NGDDPYLRQHRSSWP----KGYWTSTQGKASLLGQADGWILEEGWVVERGEPLFPLSALKMPGAHNLQNLLLAVAAARLA 296 (459)
T ss_pred ECCCHHHHHHHhcCC----ceEEeccCCccccccccceeEecCCEEEECCcceeeHHHcCCccHHHHHHHHHHHHHHHHc
Confidence 999887655432211 011110 0 0 0 0 000 011357899999999999999999988
Q ss_pred HHhccccccccCCCCCCChHHHHHHHhcC-CCCCceeEEcCCCCCCCCCCCcEEEEE-CCCCHHHHHHHHHHHHHHHHhh
Q 048728 274 LQRTSQLGINYLDTTSPLPEQFIQGLTMA-NLQGRAQIVPDRYTNSETSGDLVFYLD-GAHSPESMEICARWFSLAIKEE 351 (536)
Q Consensus 274 l~~~g~~~~~~~~~~~~~~~~i~~gL~~~-~~pGR~E~v~~~~~~~~~~~~~~vilD-~AHnp~si~~~l~~~~~~~~~~ 351 (536)
| .+++.|.++|++| .||||||++... +++.||+| +||||+|+.++++ .
T Consensus 297 ----g-----------v~~~~i~~~L~~f~~~~gR~e~~~~~-------~~~~ii~Ds~a~N~~s~~~al~----~---- 346 (459)
T PRK02705 297 ----G-----------LSAEAIAEALRSFPGVPHRLERIGTI-------NGIDFINDSKATNYDAAEVGLK----A---- 346 (459)
T ss_pred ----C-----------CCHHHHHHHHHhCCCCCCceEEEEee-------CCcEEEEeCCCCCHHHHHHHHH----h----
Confidence 5 7889999999998 599999998754 46789999 6999999999987 3
Q ss_pred ccccccCCCCCCCCCCCCCCCCcccCccccCCCcEEEEEec-CCCCChhhhhHHHHHHHHhcCCcccEEEEec
Q 048728 352 NQQETFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFNC-MSVRDPQLLLPSLMKTCARHGVYFKKALFVP 423 (536)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg~-~~drd~~~~l~~l~~~~~~~~~~~d~~i~~~ 423 (536)
++ .++++|+|. ..++|...+++.+. . ..|.++++.
T Consensus 347 -----------------------------l~-~~~i~IlGg~~~~~d~~~~~~~l~----~---~~~~vi~~g 382 (459)
T PRK02705 347 -----------------------------VP-GPVILIAGGEAKQGDDSAWLKQIK----A---KAAAVLLFG 382 (459)
T ss_pred -----------------------------CC-CCeEEEecCccCCCCHHHHHHHHH----h---heeEEEEEC
Confidence 22 367899985 45789888875553 2 368888774
No 23
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=9.1e-37 Score=332.47 Aligned_cols=245 Identities=18% Similarity=0.198 Sum_probs=182.7
Q ss_pred cEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCCCH
Q 048728 57 KVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMPSY 136 (536)
Q Consensus 57 ~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p~~ 136 (536)
++|+||||||||||++||.+||+..|.++.+.++. |.|+..
T Consensus 118 ~vIgITGTnGKTTTt~li~~iL~~~g~~~~~~Gni------------G~p~~~--------------------------- 158 (488)
T PRK03369 118 RWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGNI------------GSPVLD--------------------------- 158 (488)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHcCCceEEeCCC------------chHHHH---------------------------
Confidence 69999999999999999999999999887766654 333210
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEecccCCcccccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHccccCCCceeccC
Q 048728 137 FRFLALLAFKIFTAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKYGVPAFTVP 216 (536)
Q Consensus 137 fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k~~~~~v~~~ 216 (536)
....+.|++|+|+|+.+ ++.+..+ +|+++|||||++||+|+|| |+|+|+.+|++||+. ..+|+|.
T Consensus 159 -----------~~~~~~~~~VlE~ss~q-l~~~~~~-~P~vaVITNI~~DHLd~~g-t~e~ya~aK~~I~~~-~~~Vln~ 223 (488)
T PRK03369 159 -----------VLDEPAELLAVELSSFQ-LHWAPSL-RPEAGAVLNIAEDHLDWHG-TMAAYAAAKARALTG-RVAVVGL 223 (488)
T ss_pred -----------hccCCCCEEEEECChHH-hCccccc-CCCEEEEcCCCHHHhhhcC-CHHHHHHHHHHHhcC-CEEEEEC
Confidence 01356899999999974 3444344 7999999999999999999 999999999999984 7789999
Q ss_pred CChHHHHHHHHHhhcCCC-----------CEEEeCC------CCcc--cccceecCCCcHHHHHhHHHHHHHHHHHHHhc
Q 048728 217 QPEEAMRVLEENASKLDV-----------PLQVVPP------LDAS--LLNGLKLGLEGEHQYMNAGLAVALSSTWLQRT 277 (536)
Q Consensus 217 ~~~~~~~vl~~~a~~~~~-----------~l~~~~~------~~~~--~~~~~~l~l~G~hq~~Na~aAia~a~~ll~~~ 277 (536)
|++....+. ..+..... .+..... +... ....++++++|.||++|+++|++++..+
T Consensus 224 dd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaAla~a~~l---- 298 (488)
T PRK03369 224 DDSRAAALL-DTAPAPVRVGFRLGEPAAGELGVRDGHLVDRAFADDLRLAPVASIPVPGPVGVLDALAAAALARAV---- 298 (488)
T ss_pred CCHHHHHHH-HhCCCcEEEEEeCCCCCcCCceEECCEEEEeccCCccceechhhcCCCcHhHHHHHHHHHHHHHHc----
Confidence 888764433 22211100 1100000 0000 0113567899999999999999999987
Q ss_pred cccccccCCCCCCChHHHHHHHhcCCC-CCceeEEcCCCCCCCCCCCcEEEEE-CCCCHHHHHHHHHHHHHHHHhhcccc
Q 048728 278 SQLGINYLDTTSPLPEQFIQGLTMANL-QGRAQIVPDRYTNSETSGDLVFYLD-GAHSPESMEICARWFSLAIKEENQQE 355 (536)
Q Consensus 278 g~~~~~~~~~~~~~~~~i~~gL~~~~~-pGR~E~v~~~~~~~~~~~~~~vilD-~AHnp~si~~~l~~~~~~~~~~~~~~ 355 (536)
| ..++.|.++|++|.+ |||||++... +++.||+| |||||+|++++++ .
T Consensus 299 G-----------i~~e~i~~~L~~f~~~~gR~E~v~~~-------~gv~iIDDS~AhNp~s~~aal~----~-------- 348 (488)
T PRK03369 299 G-----------VPAGAIADALASFRVGRHRAEVVAVA-------DGITYVDDSKATNPHAARASIL----A-------- 348 (488)
T ss_pred C-----------CCHHHHHHHHHhCCCCCCccEEEEcC-------CCEEEEECCCCCCHHHHHHHHH----h--------
Confidence 5 778999999999985 9999999765 46677777 7999999999986 3
Q ss_pred ccCCCCCCCCCCCCCCCCcccCccccCCCcEEEEE-ecCCCCChhhhhHHHHHHHHhcCCcccEEEEecC
Q 048728 356 TFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLF-NCMSVRDPQLLLPSLMKTCARHGVYFKKALFVPN 424 (536)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvf-g~~~drd~~~~l~~l~~~~~~~~~~~d~~i~~~~ 424 (536)
++ ++++|| |..+++|+..+++.|.+ ..+.+++.+.
T Consensus 349 -------------------------~~--~iilI~GG~~k~~d~~~l~~~l~~-------~~~~vi~iG~ 384 (488)
T PRK03369 349 -------------------------YP--RVVWIAGGLLKGASVDALVAEMAS-------RLVGAVLIGR 384 (488)
T ss_pred -------------------------CC--CeEEEecCcCCCCCHHHHHHHHhh-------heeEEEEEcC
Confidence 32 689999 66788899988777654 2456666543
No 24
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.3e-36 Score=327.35 Aligned_cols=240 Identities=20% Similarity=0.246 Sum_probs=178.5
Q ss_pred CCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCC
Q 048728 55 QLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMP 134 (536)
Q Consensus 55 ~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p 134 (536)
..++|+||||||||||++||++||+..|++++..++. |.|.
T Consensus 104 ~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gni------------g~p~--------------------------- 144 (438)
T PRK03806 104 QAPIVAITGSNGKSTVTTLVGEMAKAAGWKVGVGGNI------------GLPA--------------------------- 144 (438)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEeCCc------------chhH---------------------------
Confidence 3579999999999999999999999999987654443 2111
Q ss_pred CHHHHHHHHHHHHHhhCCCcEEEEecccCCcccccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHccccCCCceec
Q 048728 135 SYFRFLALLAFKIFTAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKYGVPAFT 214 (536)
Q Consensus 135 ~~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k~~~~~v~ 214 (536)
+ .....+.|++|+|+|+.+ ++.++.+ +|+++|||||++||+|+||+|+|+|+.+|++|++....+|+
T Consensus 145 -----~------~~~~~~~~~~V~E~ss~~-l~~~~~~-~p~iaViTNI~~DHld~~g~s~e~~~~~K~~i~~~~~~~v~ 211 (438)
T PRK03806 145 -----L------SLLDQECELYVLELSSFQ-LETTSSL-KAAAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVV 211 (438)
T ss_pred -----H------HhhccCCCEEEEEccchh-hccCccc-CCCEEEEecCcHHHhccccCCHHHHHHHHHHHHhCCCeEEE
Confidence 0 012456799999999964 4667776 79999999999999999966999999999999998888999
Q ss_pred cCCChHHHHHHHHHhhc---CC---CCEEEeCCCC-------cc-cccceecCCCcHHHHHhHHHHHHHHHHHHHhcccc
Q 048728 215 VPQPEEAMRVLEENASK---LD---VPLQVVPPLD-------AS-LLNGLKLGLEGEHQYMNAGLAVALSSTWLQRTSQL 280 (536)
Q Consensus 215 ~~~~~~~~~vl~~~a~~---~~---~~l~~~~~~~-------~~-~~~~~~l~l~G~hq~~Na~aAia~a~~ll~~~g~~ 280 (536)
+.|++.+.... ..... .+ .++....... .. .+..++++++|.||++|+++|++++..+ |
T Consensus 212 n~dd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~a~~l----g-- 284 (438)
T PRK03806 212 NADDALTMPIR-GADKRCVSFGVNMGDYHLNRQQGETWLRVKGEKVLNTKEMKLSGQHNYTNALAALALADAV----G-- 284 (438)
T ss_pred eCCCHHHHHHh-cCCceEEEEecCCCceEEEecCCeEEEEecCceeeehhhcCCcccccHHHHHHHHHHHHHc----C--
Confidence 99988764422 11100 00 1111100000 00 0113468999999999999999999988 5
Q ss_pred ccccCCCCCCChHHHHHHHhcC-CCCCceeEEcCCCCCCCCCCCcEEEEE-CCCCHHHHHHHHHHHHHHHHhhccccccC
Q 048728 281 GINYLDTTSPLPEQFIQGLTMA-NLQGRAQIVPDRYTNSETSGDLVFYLD-GAHSPESMEICARWFSLAIKEENQQETFD 358 (536)
Q Consensus 281 ~~~~~~~~~~~~~~i~~gL~~~-~~pGR~E~v~~~~~~~~~~~~~~vilD-~AHnp~si~~~l~~~~~~~~~~~~~~~~~ 358 (536)
++++.|.++|++| +||||||.+... ++..+|+| +||||+|+.++++ .++.
T Consensus 285 ---------i~~~~i~~~L~~f~~~~gR~E~v~~~-------~~~~~i~Ds~a~n~~a~~~al~----~l~~-------- 336 (438)
T PRK03806 285 ---------IPRASSLKALTTFTGLPHRFQLVLEH-------NGVRWINDSKATNVGSTEAALN----GLHV-------- 336 (438)
T ss_pred ---------CCHHHHHHHHHhCCCCCCeEEEEEee-------CCEEEEEcCCCCCHHHHHHHHH----hCcc--------
Confidence 7889999999998 599999998754 46788888 7999999999998 3221
Q ss_pred CCCCCCCCCCCCCCCcccCccccCCCcEEEEEecC-CCCChhhhhHHH
Q 048728 359 FQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFNCM-SVRDPQLLLPSL 405 (536)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg~~-~drd~~~~l~~l 405 (536)
.+++++|||++ .+.|+..+.+.+
T Consensus 337 ------------------------~~~~i~IlG~~~k~~d~~~l~~~l 360 (438)
T PRK03806 337 ------------------------DGTLHLLLGGDGKSADFSPLARYL 360 (438)
T ss_pred ------------------------CCcEEEEECCcCCCCCHHHHHHHH
Confidence 24789999996 445766654444
No 25
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=4.9e-36 Score=327.86 Aligned_cols=269 Identities=17% Similarity=0.193 Sum_probs=190.1
Q ss_pred HHHHHHHHHHcCCcccCCCCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHH
Q 048728 37 FELLSDYLKILDLDVAISQLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYF 116 (536)
Q Consensus 37 l~~~~~~L~~Lg~~~p~~~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~ 116 (536)
.+.+.+.++.|+ .+....++|+||||||||||++||++||+.+|+++++.++. | ...+..
T Consensus 104 ~e~~~~~~~~l~--~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~~~~Gni------------~----~~~~~~-- 163 (498)
T PRK02006 104 IELFAQALAALG--ASGYAPKVLAITGTNGKTTTTALTGLLCERAGKKVAVAGNI------------S----PAALDK-- 163 (498)
T ss_pred HHHHHHHHhhhc--cccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCEEEECCC------------C----HHHHHH--
Confidence 444555565555 44444589999999999999999999999999998875433 1 110000
Q ss_pred HHHHHhhhhhhcCCCCCCCHHHHHHHHHHHHHhhCC--CcEEEEecccCCcccccccccCCcEEEEcCCCchhHhhhCCC
Q 048728 117 WWCYDRLKEKATEDIPMPSYFRFLALLAFKIFTAEQ--IDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILGNT 194 (536)
Q Consensus 117 ~~v~~~l~~~~~~~~~~p~~fe~lt~la~~~f~~~~--~d~aVlEvg~gg~~D~tn~i~~P~vaVITnI~~DHld~lG~t 194 (536)
+......+ .+++|+|+|+.+ ++.++.+ +|+++|||||++||+|+|| |
T Consensus 164 ----------------------------~~~~~~~~~~~~~~V~E~ss~~-l~~~~~~-~p~iaviTNI~~DHld~~g-s 212 (498)
T PRK02006 164 ----------------------------LMEAIDAGALPDVWVLELSSFQ-LETTHTL-APDAATVLNITQDHLDWHG-S 212 (498)
T ss_pred ----------------------------HHHhhccCCCCcEEEEEccHHH-hCccccc-CCCEEEEcCCChhhhcccC-C
Confidence 00011222 489999999854 3455555 7999999999999999999 8
Q ss_pred HHHHHHHHHccccCCCceeccCCChHHHHHHHHHhhc----CC-------CCEEEeCCC------Cc-c-----------
Q 048728 195 LGEIAGEKAGIFKYGVPAFTVPQPEEAMRVLEENASK----LD-------VPLQVVPPL------DA-S----------- 245 (536)
Q Consensus 195 le~ia~~Ka~I~k~~~~~v~~~~~~~~~~vl~~~a~~----~~-------~~l~~~~~~------~~-~----------- 245 (536)
+|+|+.+|++||+++..+|+|.||+....+....+.. .+ .++...... .. .
T Consensus 213 ~e~y~~aK~~i~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (498)
T PRK02006 213 MAAYAAAKARIFGPRTVRVLNRDDARVMAMAPPGGAADAVTFGLDEPAADGDYGLLRDNGMAWLVEAEDRDAADPAPSRR 292 (498)
T ss_pred HHHHHHHHHHHcCCCCEEEEeCCCHHHHHHhhccCCccEEEEeCCCccccccceEEecCCeEEEEecCcccccccccccc
Confidence 9999999999999888899999998765443321110 00 011100000 00 0
Q ss_pred --------------c-ccceecCCCcHHHHHhHHHHHHHHHHHHHhccccccccCCCCCCChHHHHHHHhcCC-CCCcee
Q 048728 246 --------------L-LNGLKLGLEGEHQYMNAGLAVALSSTWLQRTSQLGINYLDTTSPLPEQFIQGLTMAN-LQGRAQ 309 (536)
Q Consensus 246 --------------~-~~~~~l~l~G~hq~~Na~aAia~a~~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~~~-~pGR~E 309 (536)
. ...++++++|.||++|+++|++++..+ | .+++.|.++|++|. ++||||
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~~~~l----g-----------i~~~~i~~aL~~f~~~~gR~e 357 (498)
T PRK02006 293 RKKDAAPPPDIRLKRLMPADALRIRGLHNAANALAALALARAI----G-----------LPAAPLLHGLREYRGEPHRVE 357 (498)
T ss_pred cccccccccccchhceeeHhhcCCCcHHHHHHHHHHHHHHHHc----C-----------CCHHHHHHHHhhCCCCCCceE
Confidence 0 001357899999999999999999988 5 78899999999995 999999
Q ss_pred EEcCCCCCCCCCCCcEEEEEC-CCCHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCcccCccccCCCcEEE
Q 048728 310 IVPDRYTNSETSGDLVFYLDG-AHSPESMEICARWFSLAIKEENQQETFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQIL 388 (536)
Q Consensus 310 ~v~~~~~~~~~~~~~~vilD~-AHnp~si~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 388 (536)
++... +++.+|+|+ +|||+|+.++++ . + ++|+++
T Consensus 358 ~~~~~-------~g~~~idDs~~tn~~s~~~al~----~---------------------------------~-~~~ii~ 392 (498)
T PRK02006 358 LVATI-------DGVDYYDDSKGTNVGATVAALD----G---------------------------------L-AQRVVL 392 (498)
T ss_pred EEEEE-------CCEEEEEcCCCCCHHHHHHHHH----h---------------------------------C-CCCEEE
Confidence 99754 467888885 899999998887 3 2 247889
Q ss_pred EEecC-CCCChhhhhHHHHHHHHhcCCcccEEEEec
Q 048728 389 LFNCM-SVRDPQLLLPSLMKTCARHGVYFKKALFVP 423 (536)
Q Consensus 389 vfg~~-~drd~~~~l~~l~~~~~~~~~~~d~~i~~~ 423 (536)
|+|.+ .++++..+.+.+. + ++|.+|++.
T Consensus 393 IlGg~~~~~~~~~~~~~l~----~---~~~~vi~~G 421 (498)
T PRK02006 393 IAGGDGKGQDFSPLAAPVA----R---HARAVVLIG 421 (498)
T ss_pred EEcCCCCCCCHHHHHHHHH----H---hCCEEEEEc
Confidence 99976 3667766644333 2 368888874
No 26
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=100.00 E-value=6e-36 Score=323.08 Aligned_cols=218 Identities=20% Similarity=0.271 Sum_probs=156.0
Q ss_pred cEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCCCH
Q 048728 57 KVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMPSY 136 (536)
Q Consensus 57 ~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p~~ 136 (536)
++|+||||||||||++||.+||++.|++++.+.-.-..++ | .|.
T Consensus 103 ~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~~~~~~gn~-------G----------------------------~~~- 146 (448)
T TIGR01081 103 WVLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIGGVPGNF-------G----------------------------VSA- 146 (448)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHhcCCCCcEEeCcccccC-------c----------------------------ccc-
Confidence 4999999999999999999999999988753211100000 1 121
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEecccC--Ccccc-ccc-ccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHccccC---C
Q 048728 137 FRFLALLAFKIFTAEQIDVAILEVGLG--GRFDA-TNV-VQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKY---G 209 (536)
Q Consensus 137 fe~lt~la~~~f~~~~~d~aVlEvg~g--g~~D~-tn~-i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k~---~ 209 (536)
. . .+.|++|+|+|+. +..+. ..+ ..+|+++|||||++||+|+|+ |+|+|+.+|++|++. .
T Consensus 147 ---------~--~-~~~~~~V~E~~s~~~~~~~~l~~~~~~~P~iaVITNI~~DHld~~~-t~e~~~~~K~~i~~~~~~~ 213 (448)
T TIGR01081 147 ---------R--L-GESPFFVIEADEYDTAFFDKRSKFVHYRPRTLVLNNLEFDHADIFD-DLKAIQRQFHHLVRTVPGE 213 (448)
T ss_pred ---------c--c-CCCCEEEEEccCcCccccccccceeecCCCEEEEeCCChHhccccC-CHHHHHHHHHHHHHhCCCC
Confidence 0 1 2479999999984 33221 112 128999999999999999998 999999999999972 3
Q ss_pred CceeccCCChHHHHHHHHHhhc----CC--CCEEEe--CC----CC----cccccceecCCCcHHHHHhHHHHHHHHHHH
Q 048728 210 VPAFTVPQPEEAMRVLEENASK----LD--VPLQVV--PP----LD----ASLLNGLKLGLEGEHQYMNAGLAVALSSTW 273 (536)
Q Consensus 210 ~~~v~~~~~~~~~~vl~~~a~~----~~--~~l~~~--~~----~~----~~~~~~~~l~l~G~hq~~Na~aAia~a~~l 273 (536)
..+|++.|++.+...+...+.. .+ .++... .. +. ......+.++++|.||++|+++|++++..+
T Consensus 214 ~~~i~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~A~a~~~~l 293 (448)
T TIGR01081 214 GLILCPGRDQSLKDTLAKGCWSEQEFFGEQGEWQAEKITADGSHFDVLLDGEKVGEVKWSLVGRHNMHNALMAIAAARHV 293 (448)
T ss_pred CEEEEeCCCHHHHHHHHhccCCCeEEECCCCCEEEEEEecCCcEEEEEECCceeEEEEecCCcHHHHHHHHHHHHHHHHc
Confidence 4678888888765544322210 00 111100 00 00 001113567999999999999999999887
Q ss_pred HHhccccccccCCCCCCChHHHHHHHhcCC-CCCceeEEcCCCCCCCCCCCcEEEEECCCCHHHHHHHHHHHH
Q 048728 274 LQRTSQLGINYLDTTSPLPEQFIQGLTMAN-LQGRAQIVPDRYTNSETSGDLVFYLDGAHSPESMEICARWFS 345 (536)
Q Consensus 274 l~~~g~~~~~~~~~~~~~~~~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~vilD~AHnp~si~~~l~~~~ 345 (536)
| .+.+.+.++|++|. ||||||++... +++.||+|+||||+|++++++.|+
T Consensus 294 ----g-----------i~~~~i~~~L~~~~~~~~R~e~~~~~-------~g~~ii~D~ahNp~s~~~~l~~l~ 344 (448)
T TIGR01081 294 ----G-----------VAIEDACEALGSFVNAKRRLELKGEA-------NGITVYDDFAHHPTAIEATLQGLR 344 (448)
T ss_pred ----C-----------CCHHHHHHHHHhCCCCCcceEEEEec-------CCeEEEEeCCCCHHHHHHHHHHHH
Confidence 5 67889999999985 89999999754 358999999999999999999554
No 27
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=100.00 E-value=1e-35 Score=319.88 Aligned_cols=210 Identities=22% Similarity=0.274 Sum_probs=160.4
Q ss_pred CCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCC
Q 048728 55 QLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMP 134 (536)
Q Consensus 55 ~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p 134 (536)
+.++|+||||||||||++||++||+.+|+++.+.++. |.|.
T Consensus 101 ~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gni------------g~~~--------------------------- 141 (433)
T TIGR01087 101 PLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNI------------GTPA--------------------------- 141 (433)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECcc------------CHHH---------------------------
Confidence 4579999999999999999999999999876544332 2110
Q ss_pred CHHHHHHHHHHHHHhhCCCcEEEEecccCCcccccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHccccCC---Cc
Q 048728 135 SYFRFLALLAFKIFTAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKYG---VP 211 (536)
Q Consensus 135 ~~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k~~---~~ 211 (536)
+.+ ....+.|++|+|+|+. .++.++.+ +|+++|||||++||+|+|| |+|+|+.+|++|++.. ..
T Consensus 142 -----~~~-----~~~~~~~~~V~E~~~~-~l~~~~~~-~p~iaViTNI~~DHld~~g-s~e~~~~~K~~i~~~~~~~~~ 208 (433)
T TIGR01087 142 -----LEV-----LDQEGAELYVLELSSF-QLETTESL-RPEIALILNISEDHLDWHG-SFEDYVAAKLKIFARQTEGDV 208 (433)
T ss_pred -----HHH-----HhccCCCEEEEEcChh-HhcCCccc-CCCEEEEecCChhHhcccC-CHHHHHHHHHHHHhcCCCCCE
Confidence 011 1114689999999975 45666665 7999999999999999999 9999999999999854 46
Q ss_pred eeccCCChHHHHHHHHHhhcCCCCEEEeCC-C--C------ccc--c--cceecCCCcHHHHHhHHHHHHHHHHHHHhcc
Q 048728 212 AFTVPQPEEAMRVLEENASKLDVPLQVVPP-L--D------ASL--L--NGLKLGLEGEHQYMNAGLAVALSSTWLQRTS 278 (536)
Q Consensus 212 ~v~~~~~~~~~~vl~~~a~~~~~~l~~~~~-~--~------~~~--~--~~~~l~l~G~hq~~Na~aAia~a~~ll~~~g 278 (536)
+|++.|++.... .+...+++++.++. . + ... + ..+.++++|.||++|+++|++++..+ |
T Consensus 209 ~i~n~dd~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~a~~l----g 280 (433)
T TIGR01087 209 AVLNADDPRFAR----LAQKSKAQVIWFSVEKDAERGLCIRDGGLYLKPNDLEGSLLGLHNAENILAAIALAKSL----G 280 (433)
T ss_pred EEEECCCHHHHH----hhhhcCceEEEEeCCccCCCceEEECCEEEEeccccccCCCcHHHHHHHHHHHHHHHHc----C
Confidence 888888765432 22222334433321 0 0 000 1 12578999999999999999999988 5
Q ss_pred ccccccCCCCCCChHHHHHHHhcCC-CCCceeEEcCCCCCCCCCCCcEEEEEC-CCCHHHHHHHHH
Q 048728 279 QLGINYLDTTSPLPEQFIQGLTMAN-LQGRAQIVPDRYTNSETSGDLVFYLDG-AHSPESMEICAR 342 (536)
Q Consensus 279 ~~~~~~~~~~~~~~~~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~vilD~-AHnp~si~~~l~ 342 (536)
++++.|.++|++|. ||||||++... +++.+|+|+ +|||+|+.++++
T Consensus 281 -----------i~~~~i~~~L~~f~g~~~R~e~v~~~-------~g~~~idD~~atn~~a~~~al~ 328 (433)
T TIGR01087 281 -----------LNLEAILEALRSFKGLPHRLEYVGQK-------NGVHFYNDSKATNVHATLAALS 328 (433)
T ss_pred -----------CCHHHHHHHHHhCCCCCCceEEEEEE-------CCEEEEEcCCCCCHHHHHHHHH
Confidence 77899999999995 99999999754 468899996 999999999887
No 28
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=9e-36 Score=323.07 Aligned_cols=238 Identities=17% Similarity=0.129 Sum_probs=175.8
Q ss_pred CcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCCC
Q 048728 56 LKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMPS 135 (536)
Q Consensus 56 l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p~ 135 (536)
.++|+||||||||||++||.+||+.+|.++.+.++. |.|+.+.
T Consensus 115 ~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~Gni------------G~p~~~~------------------------- 157 (468)
T PRK04690 115 PGTVCVTGTKGKSTTTALLAHLLRAAGHRTALVGNI------------GVPLLEV------------------------- 157 (468)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEcCCC------------CcchHHH-------------------------
Confidence 379999999999999999999999999877665554 3333110
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEecccCCcccccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHccccCC--Ccee
Q 048728 136 YFRFLALLAFKIFTAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKYG--VPAF 213 (536)
Q Consensus 136 ~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k~~--~~~v 213 (536)
+ -...+.|++|+|+|+.+.-+......+|+++|||||++||+|+|| ++++|.++|++||+.. ..+|
T Consensus 158 -------~----~~~~~~~~~VlE~ss~q~~~~~~~~~~P~iaVItNI~~DHld~~g-s~e~y~~aK~~i~~~~~~~~~v 225 (468)
T PRK04690 158 -------L----APQPAPEYWAIELSSYQTGDVARSGARPELAVVLNLFPEHLDWHG-GEARYYRDKLSLVTEGRPRIAL 225 (468)
T ss_pred -------h----ccCCCCcEEEEEecCCcccccccccCCCCEEEEcCCCHHHhcccC-CHHHHHHHHHHHHhCCCCCeEE
Confidence 0 012357999999999643332221238999999999999999999 9999999999999864 3477
Q ss_pred ccCCChHHHHHHHHHhhcCCCCEEEeCC---------C--Ccc--cccceecCCCcHHHHHhHHHHHHHHHHHHHhcccc
Q 048728 214 TVPQPEEAMRVLEENASKLDVPLQVVPP---------L--DAS--LLNGLKLGLEGEHQYMNAGLAVALSSTWLQRTSQL 280 (536)
Q Consensus 214 ~~~~~~~~~~vl~~~a~~~~~~l~~~~~---------~--~~~--~~~~~~l~l~G~hq~~Na~aAia~a~~ll~~~g~~ 280 (536)
+|.|++..... . ....++..+.. + ... .+....++++|.||+.|+++|++++..+ |
T Consensus 226 ~n~dd~~~~~~-~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~h~~~Na~~A~a~~~~l----g-- 294 (468)
T PRK04690 226 LNAADPRLAAL-Q----LPDSEVVWFNHPDGWHVRGDVVYRGEQALFDTALVPLPGRHNRGNLCAVLAALEAL----G-- 294 (468)
T ss_pred EeCccHHHHHH-h----cCCCeEEEeeCCccceecceEEEcCCceEEeeccccCccHhhHHHHHHHHHHHHHc----C--
Confidence 88888764322 1 11122222210 0 000 1123567899999999999999999887 4
Q ss_pred ccccCCCCCCChHHHHHHHhcC-CCCCceeEEcCCCCCCCCCCCcEEEEE-CCCCHHHHHHHHHHHHHHHHhhccccccC
Q 048728 281 GINYLDTTSPLPEQFIQGLTMA-NLQGRAQIVPDRYTNSETSGDLVFYLD-GAHSPESMEICARWFSLAIKEENQQETFD 358 (536)
Q Consensus 281 ~~~~~~~~~~~~~~i~~gL~~~-~~pGR~E~v~~~~~~~~~~~~~~vilD-~AHnp~si~~~l~~~~~~~~~~~~~~~~~ 358 (536)
++++.|.++|++| +||||||++... +++.+|+| +||||+|++++++ .
T Consensus 295 ---------i~~~~i~~~l~~~~~~~gR~e~~~~~-------~g~~iidDs~ahNp~a~~~al~----~----------- 343 (468)
T PRK04690 295 ---------LDAVALAPAAAGFRPLPNRLQELGSR-------DGITYVNDSISTTPHASLAALD----C----------- 343 (468)
T ss_pred ---------CCHHHHHHHHHhCCCCCCCcEEEEcc-------CCeEEEEeCCCCCHHHHHHHHH----h-----------
Confidence 7789999999999 599999999764 46778888 4999999998776 3
Q ss_pred CCCCCCCCCCCCCCCcccCccccCCCcEEEEEec-CCCCChhhhhHHHH
Q 048728 359 FQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFNC-MSVRDPQLLLPSLM 406 (536)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg~-~~drd~~~~l~~l~ 406 (536)
++.+++++|||+ ..++|+..+++.|.
T Consensus 344 ----------------------~~~~~i~~i~Gg~~k~kd~~~l~~~l~ 370 (468)
T PRK04690 344 ----------------------FAGRRVALLVGGHDRGLDWTDFAAHMA 370 (468)
T ss_pred ----------------------ccCCcEEEEEcCCCCCCCHHHHHHHHH
Confidence 233588999997 47789988877664
No 29
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=100.00 E-value=1.4e-35 Score=320.30 Aligned_cols=316 Identities=15% Similarity=0.181 Sum_probs=207.6
Q ss_pred CcEEEEcCCCchhHHHHHHHHHHHhCCCCEEE-EeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCC
Q 048728 56 LKVIHVAGTKGKGSTCTFTESILRNCGFRTGL-FTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMP 134 (536)
Q Consensus 56 l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~-~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p 134 (536)
.++|+||||||||||++||++||+.+|++... .++. + |.+...
T Consensus 99 ~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg~----------~-~~~~~~------------------------- 142 (448)
T TIGR01082 99 RHSIAVAGTHGKTTTTAMIAVILKEAGLDPTVVVGGL----------V-KEAGTN------------------------- 142 (448)
T ss_pred CcEEEEECCCChHHHHHHHHHHHHHcCCCCeEEECcc----------c-ccCCcc-------------------------
Confidence 47999999999999999999999999974322 1111 0 111000
Q ss_pred CHHHHHHHHHHHHHhhCCCcEEEEecccCCcccccccccCCcEEEEcCCCchhHh-hhCCCHHHHHHHHHccccC---CC
Q 048728 135 SYFRFLALLAFKIFTAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHME-ILGNTLGEIAGEKAGIFKY---GV 210 (536)
Q Consensus 135 ~~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D~tn~i~~P~vaVITnI~~DHld-~lG~tle~ia~~Ka~I~k~---~~ 210 (536)
......|++|+|+|+..... ...+|+++|||||++||+| +++ |+|+|+.+|.+|++. +.
T Consensus 143 -------------~~~~~~~~~V~E~s~~q~~~---~~~~p~vaVitNI~~DHld~~~~-s~e~y~~aK~~i~~~~~~~~ 205 (448)
T TIGR01082 143 -------------ARLGSGEYLVAEADESDASF---LHLQPNVAIVTNIEPDHLDTYGS-SFERLKAAFEKFIHNLPFYG 205 (448)
T ss_pred -------------cccCCCCEEEEECCCccchH---hhccCCEEEEecCChhhcchhcC-CHHHHHHHHHHHHHhCCCCC
Confidence 00123699999999853322 2238999999999999999 666 999999999999975 56
Q ss_pred ceeccCCChHHHHHHHHHhhcC----C-----CCEEE--e--CC----CCc---c-cccceecCCCcHHHHHhHHHHHHH
Q 048728 211 PAFTVPQPEEAMRVLEENASKL----D-----VPLQV--V--PP----LDA---S-LLNGLKLGLEGEHQYMNAGLAVAL 269 (536)
Q Consensus 211 ~~v~~~~~~~~~~vl~~~a~~~----~-----~~l~~--~--~~----~~~---~-~~~~~~l~l~G~hq~~Na~aAia~ 269 (536)
.+|+|.|++...... ..+... + .++.. + .. +.. . ....+.++++|.||++|+++|+++
T Consensus 206 ~~V~n~dd~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~G~hn~~N~~aA~a~ 284 (448)
T TIGR01082 206 LAVICADDPVLRELV-PKATEQVITYGGSGEDADYRAENIQQSGAEGKFSVRGKGKLYLEFTLNLPGRHNVLNALAAIAV 284 (448)
T ss_pred EEEEECCCHHHHHHH-hhcCCCEEEeCCCCCCCcEEEEEEEecCCeEEEEEEECCceEEEEEecCccHhHHHHHHHHHHH
Confidence 789999988765443 222110 0 11111 0 00 000 0 012357889999999999999999
Q ss_pred HHHHHHhccccccccCCCCCCChHHHHHHHhcCC-CCCceeEEcCCCCCCCCCCCcEEEEECCCCHHHHHHHHHHHHHHH
Q 048728 270 SSTWLQRTSQLGINYLDTTSPLPEQFIQGLTMAN-LQGRAQIVPDRYTNSETSGDLVFYLDGAHSPESMEICARWFSLAI 348 (536)
Q Consensus 270 a~~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~vilD~AHnp~si~~~l~~~~~~~ 348 (536)
+..+ | .+++.|.++|++|+ ++||||++... +++.+|+||||||++++++++++++.
T Consensus 285 ~~~l----g-----------i~~~~i~~~l~~f~~~~~R~e~~~~~-------~gv~~i~D~ahn~~~~~a~~~al~~~- 341 (448)
T TIGR01082 285 ALEL----G-----------IDFEAILRALANFQGVKRRFEILGEF-------GGVLLIDDYAHHPTEIKATLKAARQG- 341 (448)
T ss_pred HHHc----C-----------CCHHHHHHHHHhCCCCCccceEEEEe-------CCeEEEEcCCCCHHHHHHHHHHHHHh-
Confidence 9887 5 77899999999997 68999999654 46899999999999999999954431
Q ss_pred HhhccccccCCCCCCCCCCCCCCCCcccCccccCCCcEEEEEecC-CCCChhhhhHHHHHHHHhcCCcccEEEEecCCcc
Q 048728 349 KEENQQETFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFNCM-SVRDPQLLLPSLMKTCARHGVYFKKALFVPNASV 427 (536)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg~~-~drd~~~~l~~l~~~~~~~~~~~d~~i~~~~~~~ 427 (536)
++.+++++|||+. ..|+.. ....|.+... .+|.+++++..
T Consensus 342 --------------------------------~~~~~ii~i~g~~~~~r~k~-~~~~~~~~l~----~~d~v~l~~~~-- 382 (448)
T TIGR01082 342 --------------------------------YPDKRIVVVFQPHRYSRTRD-LFDDFAKVLS----DADELILLDIY-- 382 (448)
T ss_pred --------------------------------cCCCeEEEEECCCCCccHHH-HHHHHHHHHH----hCCEEEEeccc--
Confidence 2345789999862 234322 2245555443 27899988642
Q ss_pred cccCCCCCCCCCcchhchhHHHHHHHHHHHhccCccccccccCCCCccccccccccccCCCCCceEeCCHHHHHHHHHHH
Q 048728 428 YNKVGSHALPPTETQIDLSWQFALQRVWENLMLGDKAVEAKNTDNASEDVKDYTELSARSCENSAVFSSLPLAIKWLRDS 507 (536)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~q~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~Ai~~~~~~ 507 (536)
. .+.... +..+.+ ++++.+.... ...+..++++++|++++.+.
T Consensus 383 -~-~~~~~~------~g~~~~----~i~~~~~~~~-------------------------~~~~~~~~~~~~a~~~a~~~ 425 (448)
T TIGR01082 383 -A-AGEEPI------NGIDGK----SLARKITQLG-------------------------KIEPYFVPDLAELVEFLAAV 425 (448)
T ss_pred -C-CCCCCC------CCCCHH----HHHHHHhhcC-------------------------CCceEEeCCHHHHHHHHHHh
Confidence 1 110000 001111 2222221100 01245678999999999876
Q ss_pred hhhcCCCCceEEEeCchhhHH
Q 048728 508 VQQNQSLRFQVLVTGSLHLIG 528 (536)
Q Consensus 508 ~~~~~~~~~~VLvtGSl~LVG 528 (536)
+++++ .||++|.-..-+
T Consensus 426 a~~gD----~VLl~G~g~~~~ 442 (448)
T TIGR01082 426 LQSGD----LILTMGAGDIIK 442 (448)
T ss_pred cCCCC----EEEEECCCCHHH
Confidence 65543 899999865443
No 30
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.6e-35 Score=319.53 Aligned_cols=212 Identities=17% Similarity=0.223 Sum_probs=158.7
Q ss_pred CCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCC
Q 048728 55 QLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMP 134 (536)
Q Consensus 55 ~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p 134 (536)
+.++|+||||||||||++||.+||+.+|+++.+.++. |.|...
T Consensus 103 ~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~Gni------------G~p~l~------------------------- 145 (454)
T PRK01368 103 NLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNI------------GVPALQ------------------------- 145 (454)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEEccC------------CHHHhc-------------------------
Confidence 4579999999999999999999999999987655443 322110
Q ss_pred CHHHHHHHHHHHHHhhCCCcEEEEecccCCcccccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHccccC---CCc
Q 048728 135 SYFRFLALLAFKIFTAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKY---GVP 211 (536)
Q Consensus 135 ~~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k~---~~~ 211 (536)
...+.|++|+|+|+.+. +.+..+ +|+++|||||++||+|+|| |+|+|+.+|..||+. +..
T Consensus 146 --------------~~~~~~~~VlE~ss~ql-~~~~~~-~P~iavitNI~~DHLd~~~-s~e~y~~aK~~i~~~~~~~~~ 208 (454)
T PRK01368 146 --------------AKASKDGYVLELSSFQL-DLVKTF-TAKIAVLLNITPDHLDRHQ-DMDGYIAAKSKIFDRMDKDSY 208 (454)
T ss_pred --------------ccCCCCEEEEEcCchhh-cccccc-CCCEEEEecCChhHhhccC-CHHHHHHHHHHHHhcCCCCCE
Confidence 12346899999999753 334433 8999999999999999999 999999999999964 456
Q ss_pred eeccCCChHHHHHHHHHhhcCCCCEEEeC------------C--C--C--cc--cccceecCCCcHHHHHhHHHHHHHHH
Q 048728 212 AFTVPQPEEAMRVLEENASKLDVPLQVVP------------P--L--D--AS--LLNGLKLGLEGEHQYMNAGLAVALSS 271 (536)
Q Consensus 212 ~v~~~~~~~~~~vl~~~a~~~~~~l~~~~------------~--~--~--~~--~~~~~~l~l~G~hq~~Na~aAia~a~ 271 (536)
+|+|.||+.............++.+..+. . . . .. ....+.++++|.||++|+++|++++.
T Consensus 209 ~Vln~Dd~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aAia~~~ 288 (454)
T PRK01368 209 AVINIDNDYCREIFIKLQQEQRIKLIPFSVTKILENGISVVDDKISDNFFDDISFKLPFNKNLQGKHNCENIAASYAVAK 288 (454)
T ss_pred EEEeCCcHHHHHHHHHhhcccCceEEEEeCCcccCCCcEEECCEEEEEecCCcceEEEecCCCCchhhHHHHHHHHHHHH
Confidence 88999988665433221111111111110 0 0 0 00 01234568899999999999999998
Q ss_pred HHHHhccccccccCCCCCCChHHHHHHHhcC-CCCCceeEEcCCCCCCCCCCCcEEEEE-CCCCHHHHHHHHH
Q 048728 272 TWLQRTSQLGINYLDTTSPLPEQFIQGLTMA-NLQGRAQIVPDRYTNSETSGDLVFYLD-GAHSPESMEICAR 342 (536)
Q Consensus 272 ~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~~-~~pGR~E~v~~~~~~~~~~~~~~vilD-~AHnp~si~~~l~ 342 (536)
.+ | .+.+.|.++|++| +||||||++... +++.+|+| +||||+|+.++++
T Consensus 289 ~l----g-----------i~~~~i~~~L~~F~~~~~Rle~v~~~-------~gv~~i~DS~atN~~a~~~al~ 339 (454)
T PRK01368 289 II----G-----------VEPKKILESISSFQSLPHRMQYIGSI-------NNISFYNDSKATNAISAVQSIK 339 (454)
T ss_pred Hc----C-----------CCHHHHHHHHHhCCCCCcceEEEEEE-------CCeEEEECCCCCCHHHHHHHHH
Confidence 87 5 7789999999998 599999999864 46889999 7999999999887
No 31
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=100.00 E-value=1.9e-35 Score=340.00 Aligned_cols=258 Identities=13% Similarity=0.129 Sum_probs=178.6
Q ss_pred CcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCCC
Q 048728 56 LKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMPS 135 (536)
Q Consensus 56 l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p~ 135 (536)
.++|+||||||||||++||.+||+++|+++..+... .+|.++..
T Consensus 104 ~~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~~gG----------~~g~~~~~-------------------------- 147 (809)
T PRK14573 104 QISILVSGSHGKTTVSSLITAIFQEAKKDPSYAIGG----------LNQEGLNG-------------------------- 147 (809)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhCCCCCeEEECC----------cccccccc--------------------------
Confidence 379999999999999999999999999864332211 01222110
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEecccCCcccccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHccccC---CCce
Q 048728 136 YFRFLALLAFKIFTAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKY---GVPA 212 (536)
Q Consensus 136 ~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k~---~~~~ 212 (536)
...+.|++|+|+|+.. .... ..+|+++|||||++||+|+|+.|+|+|+.+|..+++. ...+
T Consensus 148 -------------~~~~~d~~V~E~ss~~--~~~~-~~~P~iaViTNI~~DHLd~~~gs~e~y~~ak~~~~~~~~~~~~~ 211 (809)
T PRK14573 148 -------------YSGSSEYFVAEADESD--GSLK-HYTPEFSVITNIDNEHLSNFEGDRELLLASIQDFARKVQQINKC 211 (809)
T ss_pred -------------ccCCCCEEEEECCCCc--chhh-eeecCEEEEeCCChhhhhhhcCCHHHHHHHHHHHHhcCCCCCEE
Confidence 0124799999999862 2222 2389999999999999999833999999999888753 4568
Q ss_pred eccCCChHHHHHHHHHhh--cCCCCEEE--e--CC----CC----cccccceecCCCcHHHHHhHHHHHHHHHHHHHhcc
Q 048728 213 FTVPQPEEAMRVLEENAS--KLDVPLQV--V--PP----LD----ASLLNGLKLGLEGEHQYMNAGLAVALSSTWLQRTS 278 (536)
Q Consensus 213 v~~~~~~~~~~vl~~~a~--~~~~~l~~--~--~~----~~----~~~~~~~~l~l~G~hq~~Na~aAia~a~~ll~~~g 278 (536)
|+|.||+..........- ...+++.. + .. +. ......+.++++|.||++|+++|++++..+ |
T Consensus 212 V~N~Dd~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~l----g 287 (809)
T PRK14573 212 FYNGDCPRLKGCLQGHSYGFSSSCDLHILSYYQEGWRSYFSAKFLGVVYQDIELNLVGMHNVANAAAAMGIALTL----G 287 (809)
T ss_pred EEeCCCHHHHhhcccEEEccCCCCcEEEEEEEecCCeEEEEEEECCceEEEEEeccccHhhHHHHHHHHHHHHHc----C
Confidence 899998754331110000 00112111 0 10 10 001134678899999999999999999887 5
Q ss_pred ccccccCCCCCCChHHHHHHHhcCC-CCCceeEEcCCCCCCCCCCCcEEEEECCCCHHHHHHHHHHHHHHHHhhcccccc
Q 048728 279 QLGINYLDTTSPLPEQFIQGLTMAN-LQGRAQIVPDRYTNSETSGDLVFYLDGAHSPESMEICARWFSLAIKEENQQETF 357 (536)
Q Consensus 279 ~~~~~~~~~~~~~~~~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~vilD~AHnp~si~~~l~~~~~~~~~~~~~~~~ 357 (536)
.+.+.|.++|++|. ||||||++... +++.+|+||||||+|++++++.+ +..
T Consensus 288 -----------i~~~~i~~~L~~f~~~~~R~e~~~~~-------~~~~~i~D~ahnP~~~~a~l~~l----~~~------ 339 (809)
T PRK14573 288 -----------IDEGAIRNALKGFSGVQRRLERKNSS-------ETFLFLEDYAHHPSEISCTLRAV----RDA------ 339 (809)
T ss_pred -----------CCHHHHHHHHHhCCCCCCCCEEEecc-------CCcEEEEECCCCHHHHHHHHHHH----Hhh------
Confidence 77899999999986 99999999764 46789999999999999999944 331
Q ss_pred CCCCCCCCCCCCCCCCcccCccccCCCcEEEEEecCCCCChhhhhHHHHHHHHhcCCcccEEEEecC
Q 048728 358 DFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFNCMSVRDPQLLLPSLMKTCARHGVYFKKALFVPN 424 (536)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg~~~drd~~~~l~~l~~~~~~~~~~~d~~i~~~~ 424 (536)
++.+|+++||+...++...+.+..+..... .+|.+++|+.
T Consensus 340 -----------------------~~~~rli~vf~~~~~~~~~~~~~~~~~~l~----~~d~vilt~~ 379 (809)
T PRK14573 340 -----------------------VGLRRIIAICQPHRFSRLRECLDSFPSAFQ----DADEVILTDV 379 (809)
T ss_pred -----------------------cCCCEEEEEEcCCcchhHHHHHHHHHHHHH----HCCEEEECCc
Confidence 345688999965444444444444444332 3799999864
No 32
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=100.00 E-value=7e-36 Score=344.27 Aligned_cols=329 Identities=14% Similarity=0.144 Sum_probs=230.3
Q ss_pred CHHHHHHHHHHcCCc-ccCCCCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHH
Q 048728 36 RFELLSDYLKILDLD-VAISQLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLA 114 (536)
Q Consensus 36 ~l~~~~~~L~~Lg~~-~p~~~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~ 114 (536)
..++++++|..|+.. .++.+.++|+||||||||||+.||+++|+..|..++ ++. +++..
T Consensus 86 ~V~d~~~al~~la~~~~~~~~~~vIgVTGT~GKTTT~~ll~~iL~~~~~~~~---~~~--~~n~~--------------- 145 (822)
T PRK11930 86 KVKDPLKALQELAAYHRSQFDIPVIGITGSNGKTIVKEWLYQLLSPDYNIVR---SPR--SYNSQ--------------- 145 (822)
T ss_pred EECCHHHHHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHHhccCcEec---CCc--ccCcc---------------
Confidence 345667777777621 456778999999999999999999999998775432 221 11100
Q ss_pred HHHHHHHhhhhhhcCCCCCCCHHHHHHHHHHHHHhhCCCcEEEEeccc--CCcccccccccCCcEEEEcCCCchhHhhhC
Q 048728 115 YFWWCYDRLKEKATEDIPMPSYFRFLALLAFKIFTAEQIDVAILEVGL--GGRFDATNVVQKPVVCGISSLGYDHMEILG 192 (536)
Q Consensus 115 ~~~~v~~~l~~~~~~~~~~p~~fe~lt~la~~~f~~~~~d~aVlEvg~--gg~~D~tn~i~~P~vaVITnI~~DHld~lG 192 (536)
.+.|. +++ ....++|++|+|+|+ .+..+...-+.+|+++|||||+.||+|+||
T Consensus 146 ----------------ig~p~-----~~~----~~~~~~~~~V~E~s~s~~~~~~~l~~~~~PdiaViTNI~~dHLd~~g 200 (822)
T PRK11930 146 ----------------IGVPL-----SVW----QLNEEHELGIFEAGISQPGEMEALQKIIKPTIGILTNIGGAHQENFR 200 (822)
T ss_pred ----------------hhHHH-----HHh----cCCCCCcEEEEEeCCCCCChHHHHhhhhCCCEEEEcCccHHHHhhcC
Confidence 11121 111 135688999999997 455554433337999999999999999999
Q ss_pred CCHHHHHHHHHccccCCCceeccCCChHHHHHHHHHhhc-----C-----CCCEEEeC----C----CC--c-cccccee
Q 048728 193 NTLGEIAGEKAGIFKYGVPAFTVPQPEEAMRVLEENASK-----L-----DVPLQVVP----P----LD--A-SLLNGLK 251 (536)
Q Consensus 193 ~tle~ia~~Ka~I~k~~~~~v~~~~~~~~~~vl~~~a~~-----~-----~~~l~~~~----~----~~--~-~~~~~~~ 251 (536)
|+|+|+.+|+.||+....+|+|.|++....++...... . .+++.... . +. . .....+.
T Consensus 201 -t~e~y~~aK~~i~~~~~~~vin~Dd~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~i~~~~~~~~~~~~~~~~~~~~~ 279 (822)
T PRK11930 201 -SIKQKIMEKLKLFKDCDVIIYNGDNELISSCITKSNLTLKLISWSRKDPEAPLYIPFVEKKEDHTVISYTYKGEDFHFE 279 (822)
T ss_pred -CHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHhhhcCCcEEEEcCCCCCCcEEEEEEEEcCCceEEEEEeCCceEEEE
Confidence 99999999999999877788999988765443322111 0 11222110 0 00 0 0112477
Q ss_pred cCCCcHHHHHhHHHHHHHHHHHHHhccccccccCCCCCCChHHHHHHHhcCC-CCCceeEEcCCCCCCCCCCCcEEEEE-
Q 048728 252 LGLEGEHQYMNAGLAVALSSTWLQRTSQLGINYLDTTSPLPEQFIQGLTMAN-LQGRAQIVPDRYTNSETSGDLVFYLD- 329 (536)
Q Consensus 252 l~l~G~hq~~Na~aAia~a~~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~vilD- 329 (536)
++++|.||++|+++|++++..+ | .+++.|.++|++|. +|||||++... +++.+|+|
T Consensus 280 l~l~G~hnv~NalaAia~a~~l----G-----------i~~~~i~~~L~~f~~~~gR~e~~~~~-------~g~~vIdDS 337 (822)
T PRK11930 280 IPFIDDASIENLIHCIAVLLYL----G-----------YSADQIQERMARLEPVAMRLEVKEGI-------NNCTLINDS 337 (822)
T ss_pred ecCCCHHHHHHHHHHHHHHHHc----C-----------CCHHHHHHHHHhCCCCCCeeEEEEcC-------CCcEEEECC
Confidence 8999999999999999999888 5 78899999999996 99999999754 46899999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCcccCccccCCCcEEEEEecCCC--CChhhhhHHHHH
Q 048728 330 GAHSPESMEICARWFSLAIKEENQQETFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFNCMSV--RDPQLLLPSLMK 407 (536)
Q Consensus 330 ~AHnp~si~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg~~~d--rd~~~~l~~l~~ 407 (536)
|||||+|++++++.|++. .+.+++|+|+|.+.+ .+....+..+++
T Consensus 338 yn~nP~s~~aaL~~l~~~---------------------------------~~~~~~ilIlG~m~elG~~~~~~~~~l~~ 384 (822)
T PRK11930 338 YNSDLQSLDIALDFLNRR---------------------------------SQSKKKTLILSDILQSGQSPEELYRKVAQ 384 (822)
T ss_pred CCCCHHHHHHHHHHHHhc---------------------------------ccCCCEEEEECChHhcCchHHHHHHHHHH
Confidence 899999999999954431 123578999998744 355667788888
Q ss_pred HHHhcCCcccEEEEecCCcccccCCCCCCCCCcchhchhHHHHHHHHHHHhccCccccccccCCCCccccccccccccCC
Q 048728 408 TCARHGVYFKKALFVPNASVYNKVGSHALPPTETQIDLSWQFALQRVWENLMLGDKAVEAKNTDNASEDVKDYTELSARS 487 (536)
Q Consensus 408 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (536)
.+... .+|+++++... ..+++..+..
T Consensus 385 ~l~~~--~i~~vi~~G~~-------------------------~~~~~~~~~~--------------------------- 410 (822)
T PRK11930 385 LISKR--GIDRLIGIGEE-------------------------ISSEASKFEG--------------------------- 410 (822)
T ss_pred HHHHc--CCCEEEEECHH-------------------------HHHHHHhcCc---------------------------
Confidence 77643 47899886431 0111111100
Q ss_pred CCCceEeCCHHHHHHHHHHHhhhcCCCCceEEEeCch
Q 048728 488 CENSAVFSSLPLAIKWLRDSVQQNQSLRFQVLVTGSL 524 (536)
Q Consensus 488 ~~~~~v~~si~~Ai~~~~~~~~~~~~~~~~VLvtGSl 524 (536)
..+..+++.++|++++.+.++++ +.||+-||-
T Consensus 411 -~~~~~~~~~e~a~~~l~~~~~~g----DvVLlKGSr 442 (822)
T PRK11930 411 -TEKEFFKTTEAFLKSFAFLKFRN----ELILVKGAR 442 (822)
T ss_pred -cccEEECCHHHHHHHHHHhcCCC----CEEEEEcCC
Confidence 02456799999999998777654 389999984
No 33
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.9e-35 Score=319.15 Aligned_cols=245 Identities=19% Similarity=0.172 Sum_probs=176.4
Q ss_pred CcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCCC
Q 048728 56 LKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMPS 135 (536)
Q Consensus 56 l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p~ 135 (536)
.++|+||||||||||++||.++|+..|.++++.++. |.|+...
T Consensus 108 ~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~~~~g~i------------g~~~~~~------------------------- 150 (450)
T PRK14106 108 APIVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGNI------------GYPLIDA------------------------- 150 (450)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEeCcc------------cHHHHHH-------------------------
Confidence 689999999999999999999999999877654442 2221100
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEecccCCcccccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHccccCCC---ce
Q 048728 136 YFRFLALLAFKIFTAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKYGV---PA 212 (536)
Q Consensus 136 ~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k~~~---~~ 212 (536)
. ....+.|++|+|+|+.+.- ....+ +|+++|||||++||+++|| |+|+|+.+|++||++.. .+
T Consensus 151 ------~-----~~~~~~~~~v~E~~~~~~~-~~~~~-~P~i~VITnI~~dHl~~~g-t~e~ia~~K~~i~~~~~~~~~~ 216 (450)
T PRK14106 151 ------V-----EEYGEDDIIVAEVSSFQLE-TIKEF-KPKVGCILNITPDHLDRHK-TMENYIKAKARIFENQRPSDYT 216 (450)
T ss_pred ------H-----hcCCCCCEEEEEcChhhhc-ccccc-CCCEEEEecCCcchhcccC-CHHHHHHHHHHHHhCCCCCCEE
Confidence 0 0112579999999985321 12233 7999999999999999999 99999999999998654 46
Q ss_pred eccCCChHHHHHHHHHhhcCCCCEEEeCC-C---------------Cc--ccc---cceecCCCcHHHHHhHHHHHHHHH
Q 048728 213 FTVPQPEEAMRVLEENASKLDVPLQVVPP-L---------------DA--SLL---NGLKLGLEGEHQYMNAGLAVALSS 271 (536)
Q Consensus 213 v~~~~~~~~~~vl~~~a~~~~~~l~~~~~-~---------------~~--~~~---~~~~l~l~G~hq~~Na~aAia~a~ 271 (536)
++|.|++.... .+.+.++++..++. . .. ... ..+.++++|.||++|+++|++++.
T Consensus 217 vln~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~h~~~Na~aAia~~~ 292 (450)
T PRK14106 217 VLNYDDPRTRS----LAKKAKARVIFFSRKSLLEEGVFVKNGKIVISLGGKEEEVIDIDEIFIPGEHNLENALAATAAAY 292 (450)
T ss_pred EEeCCcHHHHH----HHhhcCceEEEEecCccCcCceEEECCEEEEecCCCcceEEEHHHcCCCCHHHHHHHHHHHHHHH
Confidence 77888764322 23333444333221 0 00 000 013678999999999999999999
Q ss_pred HHHHhccccccccCCCCCCChHHHHHHHhcCC-CCCceeEEcCCCCCCCCCCCcEEEEE-CCCCHHHHHHHHHHHHHHHH
Q 048728 272 TWLQRTSQLGINYLDTTSPLPEQFIQGLTMAN-LQGRAQIVPDRYTNSETSGDLVFYLD-GAHSPESMEICARWFSLAIK 349 (536)
Q Consensus 272 ~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~vilD-~AHnp~si~~~l~~~~~~~~ 349 (536)
.+ | .+++.+.++|+++. ||||||.+... ++..+|+| |||||+|++++++ .+
T Consensus 293 ~l----g-----------i~~~~i~~~L~~~~~~~gR~e~i~~~-------~~~~vi~D~~ahNP~s~~~~l~----~l- 345 (450)
T PRK14106 293 LL----G-----------ISPDVIANTLKTFKGVEHRIEFVAEI-------NGVKFINDSKGTNPDAAIKALE----AY- 345 (450)
T ss_pred Hc----C-----------CCHHHHHHHHHhCCCCCcceEEEeeE-------CCEEEEeCCCccCHHHHHHHHH----hC-
Confidence 88 5 77899999999985 99999998653 35789999 6999999999887 31
Q ss_pred hhccccccCCCCCCCCCCCCCCCCcccCccccCCCcEEEEEecC-CCCChhhhhHHHHHHHHhcCCcccEEEEe
Q 048728 350 EENQQETFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFNCM-SVRDPQLLLPSLMKTCARHGVYFKKALFV 422 (536)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg~~-~drd~~~~l~~l~~~~~~~~~~~d~~i~~ 422 (536)
. .++++|||.+ .+++...++..+. . .+|.++++
T Consensus 346 --------------------------------~-~~~i~v~g~~~~~k~~~~~~~~l~----~---~~~~vi~~ 379 (450)
T PRK14106 346 --------------------------------E-TPIVLIAGGYDKGSDFDEFAKAFK----E---KVKKLILL 379 (450)
T ss_pred --------------------------------C-CCeEEEeCCcCCCCCHHHHHHHHH----h---hCCEEEEE
Confidence 1 2578889754 5567666655442 2 36888876
No 34
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.4e-35 Score=311.03 Aligned_cols=212 Identities=24% Similarity=0.320 Sum_probs=167.3
Q ss_pred CCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCC
Q 048728 55 QLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMP 134 (536)
Q Consensus 55 ~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p 134 (536)
..|+|+||||||||||++|+.+||++.|+++.+-++. |.|..+-
T Consensus 109 ~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNI------------G~p~l~~------------------------ 152 (448)
T COG0771 109 EAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNI------------GTPALEL------------------------ 152 (448)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHHhcCCCceecccc------------CccHHHh------------------------
Confidence 4679999999999999999999999999999887766 5444321
Q ss_pred CHHHHHHHHHHHHHhhCCCcEEEEecccCCcccccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHccccCCC-cee
Q 048728 135 SYFRFLALLAFKIFTAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKYGV-PAF 213 (536)
Q Consensus 135 ~~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k~~~-~~v 213 (536)
+ -.....|+.|+|+||.+ ++.+.-+ +|.+++||||++||||||| ++|+|..+|.+|++... .+|
T Consensus 153 -----~-------~~~~~~d~~VlElSSfQ-L~~~~~~-~P~iavilNi~~DHLD~H~-s~e~Y~~aK~~i~~~~~~~~V 217 (448)
T COG0771 153 -----L-------EQAEPADVYVLELSSFQ-LETTSSL-RPEIAVILNISEDHLDRHG-SMENYAAAKLRILEGQTEVAV 217 (448)
T ss_pred -----h-------cccCCCCEEEEEccccc-cccCccC-CccEEEEecCCHHHhhhcc-CHHHHHHHHHHHHcCCccEEE
Confidence 0 01347899999999985 4444433 8999999999999999999 99999999999999877 789
Q ss_pred ccCCChHHHHHHHHHhhcCCCCEEEeC---CC-------Ccc-------cccceecCCCcHHHHHhHHHHHHHHHHHHHh
Q 048728 214 TVPQPEEAMRVLEENASKLDVPLQVVP---PL-------DAS-------LLNGLKLGLEGEHQYMNAGLAVALSSTWLQR 276 (536)
Q Consensus 214 ~~~~~~~~~~vl~~~a~~~~~~l~~~~---~~-------~~~-------~~~~~~l~l~G~hq~~Na~aAia~a~~ll~~ 276 (536)
+|.||+.+....... .......+. .. +.. ....-.++++|.||++|+++|+++|+.+
T Consensus 218 in~dd~~~~~~~~~~---~~~~~~~fs~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~l~G~hn~~N~lAa~a~a~~~--- 291 (448)
T COG0771 218 INADDAYLKTLADEA---TKARVIWFSFGEPLADGDYIYDGKLVFKGEKLLPADELKLPGAHNLENALAALALARAL--- 291 (448)
T ss_pred EeCCcHHHhhhhhhc---ccceeEEEEccccccccceeecchhccccccccchhhcCCcchhhHHHHHHHHHHHHHc---
Confidence 999988664433221 111111111 10 000 0123468999999999999999999998
Q ss_pred ccccccccCCCCCCChHHHHHHHhcCC-CCCceeEEcCCCCCCCCCCCcEEEEEC-CCCHHHHHHHHH
Q 048728 277 TSQLGINYLDTTSPLPEQFIQGLTMAN-LQGRAQIVPDRYTNSETSGDLVFYLDG-AHSPESMEICAR 342 (536)
Q Consensus 277 ~g~~~~~~~~~~~~~~~~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~vilD~-AHnp~si~~~l~ 342 (536)
| .+++.|.++|++|+ +|||||.+... +|+.||+|. |.||++..+++.
T Consensus 292 -g-----------v~~e~i~~~L~~F~gl~HR~e~v~~~-------~gv~f~NDSKATN~~At~~AL~ 340 (448)
T COG0771 292 -G-----------VPPEAILEALSSFTGLPHRLEFVGEK-------DGVLFINDSKATNVDATLAALS 340 (448)
T ss_pred -C-----------CCHHHHHHHHHhCCCCCcceEEEEec-------CCEEEecCCCCCCHHHHHHHHH
Confidence 5 78899999999995 99999999987 789999999 999999999886
No 35
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=5.4e-35 Score=315.29 Aligned_cols=211 Identities=20% Similarity=0.190 Sum_probs=158.1
Q ss_pred CCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCC
Q 048728 55 QLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMP 134 (536)
Q Consensus 55 ~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p 134 (536)
+.++|+||||||||||++||.+||+..|.++.+.++. |.|.+.-
T Consensus 107 ~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~~~Gni------------g~p~~~~------------------------ 150 (447)
T PRK02472 107 EAPIIGITGSNGKTTTTTLIGEMLKAGGQHALLAGNI------------GYPASEV------------------------ 150 (447)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHHHCCCCeEEEccc------------ChhhHHH------------------------
Confidence 3579999999999999999999999999877555443 3322110
Q ss_pred CHHHHHHHHHHHHHhhCCCcEEEEecccCCcccccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHccccCCC---c
Q 048728 135 SYFRFLALLAFKIFTAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKYGV---P 211 (536)
Q Consensus 135 ~~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k~~~---~ 211 (536)
. -...+.|++|+|+++.+.. .+..+ +|+++|||||++||+|+|| |+|+|+.+|++|+++.. .
T Consensus 151 -----------~-~~~~~~~~~V~E~ss~~~~-~~~~~-~P~iaVITnI~~DHld~~g-t~e~i~~~K~~i~~~~~~~~~ 215 (447)
T PRK02472 151 -----------A-QKATADDTLVMELSSFQLM-GIETF-RPHIAVITNIYPAHLDYHG-TFENYVAAKWNIQKNQTEDDY 215 (447)
T ss_pred -----------H-hcCCCCCEEEEEcCchhhC-ccccc-CCCEEEEeccChhhhcccC-CHHHHHHHHHHHHhcCCCCCE
Confidence 0 0123579999999986543 35555 7999999999999999999 99999999999998654 4
Q ss_pred eeccCCChHHHHHHHHHhhcCCCCEEEeCC--------------C--Cccc-ccceecCCCcHHHHHhHHHHHHHHHHHH
Q 048728 212 AFTVPQPEEAMRVLEENASKLDVPLQVVPP--------------L--DASL-LNGLKLGLEGEHQYMNAGLAVALSSTWL 274 (536)
Q Consensus 212 ~v~~~~~~~~~~vl~~~a~~~~~~l~~~~~--------------~--~~~~-~~~~~l~l~G~hq~~Na~aAia~a~~ll 274 (536)
+|++.|++.......+ ..+++..+.. + .... +..++++++|.||++|+++|++++..+
T Consensus 216 ~v~n~dd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~l- 290 (447)
T PRK02472 216 LVINFDQEEVKELAKQ----TKATVVPFSTTEKVEDGAYIKDGALYFKGEKIMAADDIVLPGSHNLENALAAIAAAKLL- 290 (447)
T ss_pred EEEeCCcHHHHHHHhh----cCceEEEeecCCCCcCceEEECCEEEECCceEEehhhcCCCCHHHHHHHHHHHHHHHHc-
Confidence 8888888765433221 1222211110 0 0000 012367899999999999999999988
Q ss_pred HhccccccccCCCCCCChHHHHHHHhcCC-CCCceeEEcCCCCCCCCCCCcEEEEEC-CCCHHHHHHHHH
Q 048728 275 QRTSQLGINYLDTTSPLPEQFIQGLTMAN-LQGRAQIVPDRYTNSETSGDLVFYLDG-AHSPESMEICAR 342 (536)
Q Consensus 275 ~~~g~~~~~~~~~~~~~~~~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~vilD~-AHnp~si~~~l~ 342 (536)
| ++++.|.++|++|. ||||||++... +++.||+|+ ||||+|+..+++
T Consensus 291 ---g-----------i~~~~i~~~L~~f~~~~~R~e~~~~~-------~g~~vi~D~~a~N~~s~~~al~ 339 (447)
T PRK02472 291 ---G-----------VSNEAIREVLSTFSGVKHRLQYVGTI-------DGRKFYNDSKATNILATQKALS 339 (447)
T ss_pred ---C-----------CCHHHHHHHHHhCCCCCCcceEEEEE-------CCeEEEECCCCCCHHHHHHHHH
Confidence 5 77899999999985 99999999753 468999996 999999988776
No 36
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=8.5e-35 Score=315.93 Aligned_cols=244 Identities=20% Similarity=0.270 Sum_probs=178.2
Q ss_pred cEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCCCH
Q 048728 57 KVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMPSY 136 (536)
Q Consensus 57 ~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p~~ 136 (536)
++|+||||||||||++||++||+..|+++.+.++. |.|++..
T Consensus 122 ~vIaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gni------------g~p~~~~-------------------------- 163 (473)
T PRK00141 122 TWLAVTGTNGKTTTTAMLAAMMQEGGFAAQAVGNI------------GVPVSAA-------------------------- 163 (473)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHHhcCCcEEEeccC------------ChhHHHH--------------------------
Confidence 69999999999999999999999999988766654 3332210
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEecccCCcccccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHccccCCCceeccC
Q 048728 137 FRFLALLAFKIFTAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKYGVPAFTVP 216 (536)
Q Consensus 137 fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k~~~~~v~~~ 216 (536)
+ ....+.|++|+|+|+.+. +....+ +|+++|||||++||+|+|| |+|+|+.+|..||+. ..+|+|.
T Consensus 164 ------l----~~~~~~~~~V~E~ss~~l-~~~~~~-~pdiaViTNi~~dHLd~~~-s~e~y~~aK~~l~~~-~~~vln~ 229 (473)
T PRK00141 164 ------L----VAQPRIDVLVAELSSFQL-HWSPTL-TPDVGVVLNLAEDHIDWHG-SMRDYAADKAKVLRG-PVAVIGA 229 (473)
T ss_pred ------H----hcCCCCCEEEEecCCccc-ccCccc-CCCEEEEcCCChhhccccC-CHHHHHHHHHHHhhC-CEEEEEC
Confidence 0 023468999999999764 333444 8999999999999999999 999999999999975 4688899
Q ss_pred CChHHHHHHHHHhhcCCCCEEEeC---C------C--------C-ccc--c-cceecCCCcHHHHHhHHHHHHHHHHHHH
Q 048728 217 QPEEAMRVLEENASKLDVPLQVVP---P------L--------D-ASL--L-NGLKLGLEGEHQYMNAGLAVALSSTWLQ 275 (536)
Q Consensus 217 ~~~~~~~vl~~~a~~~~~~l~~~~---~------~--------~-~~~--~-~~~~l~l~G~hq~~Na~aAia~a~~ll~ 275 (536)
||+........ .. ...+..+. . + . ... + ..+.++++|.||++|+++|++++..+
T Consensus 230 Dd~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aA~a~~~~l-- 304 (473)
T PRK00141 230 DDEYVVQLTSA-AD--LSGLIGFTMGEPAAGQVGVRDGELVDNAFGQNVVLASAEGISPAGPAGVLDALAAAAVARSQ-- 304 (473)
T ss_pred CCHHHHHHHhh-cC--CCcEEEEeCCCCCcCcceEECCEEEEecCCCceEEeehhhcCCCcHhHHHHHHHHHHHHHHc--
Confidence 98866443222 11 01111110 0 0 0 000 0 12357899999999999999999887
Q ss_pred hccccccccCCCCCCChHHHHHHHhcCCCCC-ceeEEcCCCCCCCCCCCcEEEEEC-CCCHHHHHHHHHHHHHHHHhhcc
Q 048728 276 RTSQLGINYLDTTSPLPEQFIQGLTMANLQG-RAQIVPDRYTNSETSGDLVFYLDG-AHSPESMEICARWFSLAIKEENQ 353 (536)
Q Consensus 276 ~~g~~~~~~~~~~~~~~~~i~~gL~~~~~pG-R~E~v~~~~~~~~~~~~~~vilD~-AHnp~si~~~l~~~~~~~~~~~~ 353 (536)
| .+.+.+.++|+++.|++ |||++... ++..+|+|+ ||||+|++++++ .
T Consensus 305 --g-----------i~~~~i~~~l~~~~~~~~R~e~~~~~-------~~~~iiDdsyahNp~s~~~~l~----~------ 354 (473)
T PRK00141 305 --G-----------VAPEAIARALSSFEVAGHRGQVVAEH-------GGVTWIDNSKATNPHAADAALA----G------ 354 (473)
T ss_pred --C-----------CCHHHHHHHHhhCCCCCCceEEEEEe-------CCEEEEEcCCCCCHHHHHHHHH----h------
Confidence 5 77899999999999776 99998753 345445454 999999999987 3
Q ss_pred ccccCCCCCCCCCCCCCCCCcccCccccCCCcEEEEE-ecCCCCChhhhhHHHHHHHHhcCCcccEEEEec
Q 048728 354 QETFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLF-NCMSVRDPQLLLPSLMKTCARHGVYFKKALFVP 423 (536)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvf-g~~~drd~~~~l~~l~~~~~~~~~~~d~~i~~~ 423 (536)
+ .++++|| |...|||...++..|... .+.+++++
T Consensus 355 ---------------------------l--~~~~~i~gG~~kdkd~~~~~~~l~~~-------~~~~~~~~ 389 (473)
T PRK00141 355 ---------------------------H--ESVVWVAGGQLKGADIDDLIRTHAPR-------IKAAVVLG 389 (473)
T ss_pred ---------------------------c--CCEEEEecCccCCCChHHHHHHHHhh-------ccEEEEEC
Confidence 1 2568999 566899999887766542 45566654
No 37
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.7e-34 Score=300.34 Aligned_cols=258 Identities=18% Similarity=0.230 Sum_probs=199.0
Q ss_pred CCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCC
Q 048728 55 QLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMP 134 (536)
Q Consensus 55 ~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p 134 (536)
....|+|+||+||||||+||+++|.++|++.+.+ |+|.+-.-. .+
T Consensus 106 ~~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~-------------iGG~~~~~g-----------------~n----- 150 (459)
T COG0773 106 FRTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFL-------------IGGILKNFG-----------------TN----- 150 (459)
T ss_pred CCeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEE-------------ECcccccCC-----------------cc-----
Confidence 4579999999999999999999999999876543 333211100 00
Q ss_pred CHHHHHHHHHHHHHhhCCCcEEEEecccCCcccccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHcccc---CCCc
Q 048728 135 SYFRFLALLAFKIFTAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFK---YGVP 211 (536)
Q Consensus 135 ~~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k---~~~~ 211 (536)
......+|.|+|+ .++|+..+..+|.++|||||..||+|+++ ++++|..+...+++ ..+.
T Consensus 151 -------------a~~g~~~~fV~EA---DEsD~sFl~~~P~~aIvTNid~DH~D~y~-~~~~i~~~F~~f~~~vp~~G~ 213 (459)
T COG0773 151 -------------ARLGSGDYFVAEA---DESDSSFLHYNPRVAIVTNIEFDHLDYYG-DLEAIKQAFHHFVRNVPFYGR 213 (459)
T ss_pred -------------cccCCCceEEEEe---cccccccccCCCCEEEEeCCCcchhhhhC-CHHHHHHHHHHHHHhCCccce
Confidence 0112348999999 89999999899999999999999999999 99999888776664 4556
Q ss_pred eeccCCChHHHHHHHHHhhc----C----CCCEEEeC-----C---C----CcccccceecCCCcHHHHHhHHHHHHHHH
Q 048728 212 AFTVPQPEEAMRVLEENASK----L----DVPLQVVP-----P---L----DASLLNGLKLGLEGEHQYMNAGLAVALSS 271 (536)
Q Consensus 212 ~v~~~~~~~~~~vl~~~a~~----~----~~~l~~~~-----~---~----~~~~~~~~~l~l~G~hq~~Na~aAia~a~ 271 (536)
+|++.|||...+++...+.. . .++++... . | ....+..+.++++|+||+.||++|+++|+
T Consensus 214 ~v~~~dd~~l~~l~~~~~~~~v~tyG~~~~ad~~a~ni~~~~~~~~F~V~~~g~~~~~~~l~~pG~HNvlNAlaaia~a~ 293 (459)
T COG0773 214 AVVCGDDPNLRELLSRGCWSPVVTYGFDDEADWRAENIRQDGSGTTFDVLFRGEELGEVKLPLPGRHNVLNALAAIAVAR 293 (459)
T ss_pred EEEECCCHHHHHHHhcccCCcEEeecCCCcCcEEEEEeEEeccccEEEEEEcCceeEEEEEcCCchhhHHHHHHHHHHHH
Confidence 89999999876655532211 0 12332211 0 1 11234568999999999999999999999
Q ss_pred HHHHhccccccccCCCCCCChHHHHHHHhcCC-CCCceeEEcCCCCCCCCCCCcEEEEECCCCHHHHHHHHHHHHHHHHh
Q 048728 272 TWLQRTSQLGINYLDTTSPLPEQFIQGLTMAN-LQGRAQIVPDRYTNSETSGDLVFYLDGAHSPESMEICARWFSLAIKE 350 (536)
Q Consensus 272 ~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~vilD~AHnp~si~~~l~~~~~~~~~ 350 (536)
.+ | .+++.|+++|++|. +..|||+.... +++.+|+||||+|.+++++|+ ++|.
T Consensus 294 ~~----G-----------i~~~~i~~aL~~F~GvkRRfe~~g~~-------~~~~viDDYaHHPtEI~aTL~----aaR~ 347 (459)
T COG0773 294 EL----G-----------IDPEAIAEALASFQGVKRRFELKGEV-------NGVTVIDDYAHHPTEIKATLA----AARQ 347 (459)
T ss_pred Hc----C-----------CCHHHHHHHHHhCCCcceeeEEeeeE-------CCEEEEecCCCCHHHHHHHHH----HHHH
Confidence 98 5 78899999999996 99999998876 579999999999999999999 6665
Q ss_pred hccccccCCCCCCCCCCCCCCCCcccCccccC-CCcEEEEEecCCCCChhhhhHHHHHHHHhcCCcccEEEEec
Q 048728 351 ENQQETFDFQPPNSSGSSNGLPQRQHDGKIRK-NSAQILLFNCMSVRDPQLLLPSLMKTCARHGVYFKKALFVP 423 (536)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ilvfg~~~drd~~~~l~~l~~~~~~~~~~~d~~i~~~ 423 (536)
. .+ .+|+|+||..........++..+.+... .+|.+++++
T Consensus 348 ~-----------------------------~~~~~rIvaifQPHrySRt~~~~~dF~~~l~----~AD~v~l~~ 388 (459)
T COG0773 348 K-----------------------------VPGGKRIVAVFQPHRYSRTRDLLDDFAKALS----DADEVILLD 388 (459)
T ss_pred h-----------------------------cCCCceEEEEECCCchHhHHHHHHHHHHHHh----cCCEEEEec
Confidence 2 45 3899999998777666677777777663 489999986
No 38
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=9.2e-34 Score=302.53 Aligned_cols=334 Identities=20% Similarity=0.217 Sum_probs=237.6
Q ss_pred CHHHHHHHHHHcCCc-ccCCCCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHH
Q 048728 36 RFELLSDYLKILDLD-VAISQLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLA 114 (536)
Q Consensus 36 ~l~~~~~~L~~Lg~~-~p~~~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~ 114 (536)
....+.+.|.+|+.. ....+.++|+|||++|||||+.|+++||+..|. .+.||+ ++
T Consensus 82 ~V~d~~~al~~la~~~~~~~~~kvIaITGS~GKTTTKe~la~iL~~~~~---v~~t~g--n~------------------ 138 (451)
T COG0770 82 LVLDTLEALGKLAKAYRQKFNAKVIAITGSNGKTTTKEMLAAILSTKGK---VHATPG--NF------------------ 138 (451)
T ss_pred EeHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHhhcCe---EecCCC--cc------------------
Confidence 346777777777633 334578899999999999999999999998653 567773 22
Q ss_pred HHHHHHHhhhhhhcCCCCCCCHHHHHHHHHHHHHhhCCCcEEEEeccc--CCcccccccccCCcEEEEcCCCchhHhhhC
Q 048728 115 YFWWCYDRLKEKATEDIPMPSYFRFLALLAFKIFTAEQIDVAILEVGL--GGRFDATNVVQKPVVCGISSLGYDHMEILG 192 (536)
Q Consensus 115 ~~~~v~~~l~~~~~~~~~~p~~fe~lt~la~~~f~~~~~d~aVlEvg~--gg~~D~tn~i~~P~vaVITnI~~DHld~lG 192 (536)
+++++.| +|++ ....+.|++|+|+|+ .|+++.+.-+.+|+++|||||+.+|++++|
T Consensus 139 -------------Nn~iGlP-----ltll----~~~~~~e~~VlEmG~~~~GeI~~l~~i~~P~iavItnIg~aHle~fg 196 (451)
T COG0770 139 -------------NNEIGLP-----LTLL----RLPADTEYAVLEMGMNHPGEIAELSEIARPDIAVITNIGEAHLEGFG 196 (451)
T ss_pred -------------Cccccch-----hHHH----hCCCcccEEEEEcCCCCCCcHHHHhcccCCCEEEEcChhHHHHHhcC
Confidence 2333444 2333 234569999999999 677777666669999999999999999999
Q ss_pred CCHHHHHHHHHccccC---CCceeccCCChHHHHHHHHHhhcCCCCEEEeCC-------------------CCcc---cc
Q 048728 193 NTLGEIAGEKAGIFKY---GVPAFTVPQPEEAMRVLEENASKLDVPLQVVPP-------------------LDAS---LL 247 (536)
Q Consensus 193 ~tle~ia~~Ka~I~k~---~~~~v~~~~~~~~~~vl~~~a~~~~~~l~~~~~-------------------~~~~---~~ 247 (536)
|.|.|+++|+.|+.. ++.+|++.|++..... .... ....+..++. |+.. ..
T Consensus 197 -s~e~Ia~aK~Ei~~~~~~~g~ai~n~d~~~~~~~-~~~~--~~~~v~~fg~~~~~d~~~~~i~~~~~~~~f~~~~~~~~ 272 (451)
T COG0770 197 -SREGIAEAKAEILAGLRPEGIAILNADNPLLKNW-AAKI--GNAKVLSFGLNNGGDFRATNIHLDEEGSSFTLDIEGGE 272 (451)
T ss_pred -CHHHHHHHHHHHHhccCCCcEEEEECccHHHHHH-Hhhc--CCCcEEEEcCCCCCceeeEEEEEcCCceEEEEEecCce
Confidence 899999999999974 4458888887652221 1110 0122222110 0000 01
Q ss_pred cceecCCCcHHHHHhHHHHHHHHHHHHHhccccccccCCCCCCChHHHHHHHhcCC-CCCceeEEcCCCCCCCCCCCcEE
Q 048728 248 NGLKLGLEGEHQYMNAGLAVALSSTWLQRTSQLGINYLDTTSPLPEQFIQGLTMAN-LQGRAQIVPDRYTNSETSGDLVF 326 (536)
Q Consensus 248 ~~~~l~l~G~hq~~Na~aAia~a~~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~v 326 (536)
..+.++++|+||+.|+++|+++|..+ | .+.++|+++|+.+. ++||+|.+... ++.++
T Consensus 273 ~~~~l~~~G~hn~~NalaA~a~a~~l----G-----------~~~e~i~~~L~~~~~~~gR~~~~~~~-------~g~~i 330 (451)
T COG0770 273 AEFELPLPGRHNVTNALAAAALALEL----G-----------LDLEEIAAGLKELKPVKGRLEVILLA-------NGKTL 330 (451)
T ss_pred EEEEecCCcHhHHHHHHHHHHHHHHc----C-----------CCHHHHHHHHHhcCCCCccceeEecC-------CCcEE
Confidence 14889999999999999999999999 6 78899999999996 89999954444 46788
Q ss_pred EEE-CCCCHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCcccCccccCCCcEEEEEecCCC--CChhhhhH
Q 048728 327 YLD-GAHSPESMEICARWFSLAIKEENQQETFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFNCMSV--RDPQLLLP 403 (536)
Q Consensus 327 ilD-~AHnp~si~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg~~~d--rd~~~~l~ 403 (536)
|+| |+.||+||.++++.+.. ++..+.|+|+|.|.+ .+..+++.
T Consensus 331 IdD~YNAnp~sm~aai~~l~~----------------------------------~~~~~~i~VlGdM~ELG~~s~~~H~ 376 (451)
T COG0770 331 IDDSYNANPDSMRAALDLLAA----------------------------------LPGRKGIAVLGDMLELGEESEELHE 376 (451)
T ss_pred EEcCCCCCHHHHHHHHHHHhh----------------------------------CccCCcEEEeCChhhhCccHHHHHH
Confidence 888 59999999999994443 233444999999876 45778889
Q ss_pred HHHHHHHhcCCcccEEEEecCCcccccCCCCCCCCCcchhchhHHHHHHHHHHHhccCccccccccCCCCcccccccccc
Q 048728 404 SLMKTCARHGVYFKKALFVPNASVYNKVGSHALPPTETQIDLSWQFALQRVWENLMLGDKAVEAKNTDNASEDVKDYTEL 483 (536)
Q Consensus 404 ~l~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (536)
.+++.+.+. .+|.++++.+. .+.+++.+..
T Consensus 377 ~v~~~~~~~--~~d~v~~~G~~-------------------------~~~i~~~~~~----------------------- 406 (451)
T COG0770 377 EVGEYAVEA--GIDLVFLVGEL-------------------------SKAIAEALGN----------------------- 406 (451)
T ss_pred HHHHHHHhc--CceEEEEEccc-------------------------hHHHHHhcCC-----------------------
Confidence 999988764 38999987541 0123332211
Q ss_pred ccCCCCCceEeCCHHHHHHHHHHHhhhcCCCCceEEEeCchhh-HHHHHHHh
Q 048728 484 SARSCENSAVFSSLPLAIKWLRDSVQQNQSLRFQVLVTGSLHL-IGDVLKIV 534 (536)
Q Consensus 484 ~~~~~~~~~v~~si~~Ai~~~~~~~~~~~~~~~~VLvtGSl~L-VG~vl~~l 534 (536)
....|.+-++.++.+....++.+ .|||-||-.. ...+...|
T Consensus 407 ------~~~~f~~~~~l~~~l~~~l~~gd----~vLvKgSr~~~le~vv~~l 448 (451)
T COG0770 407 ------KGIYFADKEELITSLKALLRKGD----VVLVKGSRGMKLEKVVDAL 448 (451)
T ss_pred ------CeEecCCHHHHHHHHHHhcCCCC----EEEEEcCccccHHHHHHHH
Confidence 14566676666766666555443 8999999876 45555544
No 39
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2.3e-33 Score=302.08 Aligned_cols=212 Identities=17% Similarity=0.187 Sum_probs=157.2
Q ss_pred CCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCC
Q 048728 55 QLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMP 134 (536)
Q Consensus 55 ~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p 134 (536)
+.++|+||||||||||+.||+++|+.+|.+++..++. |.|.
T Consensus 107 ~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gni------------G~~~--------------------------- 147 (438)
T PRK04663 107 DKPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNI------------GVPA--------------------------- 147 (438)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEEccc------------CHHH---------------------------
Confidence 3579999999999999999999999999887654432 2211
Q ss_pred CHHHHHHHHHHHHHhhCCCcEEEEecccCCcccccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHccccCCCceec
Q 048728 135 SYFRFLALLAFKIFTAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKYGVPAFT 214 (536)
Q Consensus 135 ~~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k~~~~~v~ 214 (536)
..+...+.|++|+|+|+.+. +.+..+ +|+++|||||++||+|+|| |+|+|+.+|..||+....+|+
T Consensus 148 -----------~~~~~~~~~~~V~E~ss~~l-~~~~~~-~p~iavitNi~~dHld~~g-s~e~y~~aK~~i~~~~~~~v~ 213 (438)
T PRK04663 148 -----------LDLLEQDAELYVLELSSFQL-ETTSSL-KLKAAAFLNLSEDHMDRYQ-GMEDYRQAKLRIFDHAELAVV 213 (438)
T ss_pred -----------HhhhcCCCCEEEEEcChhhh-ccCccc-CCCEEEEecCChhhCcccC-CHHHHHHHHHHHHhCCCEEEE
Confidence 00123467999999999753 334444 7999999999999999999 999999999999987667889
Q ss_pred cCCChHHHHHHHHHhh--cCC---CCEEEe--CC--CC---cc-cccceecCCCcHHHHHhHHHHHHHHHHHHHhccccc
Q 048728 215 VPQPEEAMRVLEENAS--KLD---VPLQVV--PP--LD---AS-LLNGLKLGLEGEHQYMNAGLAVALSSTWLQRTSQLG 281 (536)
Q Consensus 215 ~~~~~~~~~vl~~~a~--~~~---~~l~~~--~~--~~---~~-~~~~~~l~l~G~hq~~Na~aAia~a~~ll~~~g~~~ 281 (536)
|.||+....... ..+ ..+ .++... .. +. .. ....+.++++|.||++|+++|++++..+ |
T Consensus 214 n~dd~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hNv~NalaAia~a~~l----G--- 285 (438)
T PRK04663 214 NRDDKQTYPDHA-ELQLVTFGFDQQDFGLAQHQGREWLADNGQPVLASAELKLVGRHNVANVLVVLALLDAA----G--- 285 (438)
T ss_pred eCCCHHHHhhhc-CCcEEEEecCCCCCCeEecCCeEEEEeCCceeeehhhcCCcchhhHHHHHHHHHHHHHc----C---
Confidence 999876432211 000 000 010000 00 00 00 0123678999999999999999999988 5
Q ss_pred cccCCCCCCChHHHHHHHhcCC-CCCceeEEcCCCCCCCCCCCcEEEEEC-CCCHHHHHHHHH
Q 048728 282 INYLDTTSPLPEQFIQGLTMAN-LQGRAQIVPDRYTNSETSGDLVFYLDG-AHSPESMEICAR 342 (536)
Q Consensus 282 ~~~~~~~~~~~~~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~vilD~-AHnp~si~~~l~ 342 (536)
.+++.|.++|++|+ ++||||++... +++.+|+|+ ++||+|+.++++
T Consensus 286 --------i~~~~i~~~L~~f~g~~~R~e~v~~~-------~g~~~idDs~~tn~~s~~~Al~ 333 (438)
T PRK04663 286 --------VDYRKALDALKSYTGLTHRCQVVADN-------HGIKWVNDSKATNVASTLAALS 333 (438)
T ss_pred --------CCHHHHHHHHHhCCCCCCceEEeeee-------CCcEEEeCCCcCCHHHHHHHHH
Confidence 78899999999995 99999999764 467788875 899999999887
No 40
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=7.3e-33 Score=299.82 Aligned_cols=247 Identities=19% Similarity=0.181 Sum_probs=176.5
Q ss_pred CCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCC
Q 048728 55 QLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMP 134 (536)
Q Consensus 55 ~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p 134 (536)
+.++|+||||||||||+.||.+||+..|+++...++. |.|+..
T Consensus 116 ~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~~~gni------------G~p~~~------------------------- 158 (458)
T PRK01710 116 PAKVFGVTGSDGKTTTTTLIYEMLKEEGYKTWVGGNI------------GTPLFS------------------------- 158 (458)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHhCCCCEEECCcc------------ChhHHH-------------------------
Confidence 4579999999999999999999999999877432222 322210
Q ss_pred CHHHHHHHHHHHHHhhCCCcEEEEecccCCcccccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHcccc---CCCc
Q 048728 135 SYFRFLALLAFKIFTAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFK---YGVP 211 (536)
Q Consensus 135 ~~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k---~~~~ 211 (536)
.+ ....+.|++|+|+|+.+..+. .+ +|+++|||||++||+|+|| |+|+|+.+|..|++ ++..
T Consensus 159 -------~~----~~~~~~~~~VlE~~~~~~~~~-~~--~PdiaViTNI~~dHld~~~-s~e~~~~aK~~i~~~~~~~~~ 223 (458)
T PRK01710 159 -------NI----EEIKEEDKVVLELSSFQLMTM-DV--SPEVAVVTNLSPNHLDVHK-DMEEYIDAKKNIFKYQSENDL 223 (458)
T ss_pred -------HH----hhCCCCCEEEEEcCccccccC-CC--CCCEEEEecCChhhccccC-CHHHHHHHHHHHHhcCCCCCE
Confidence 00 012357999999999433322 22 8999999999999999999 99999999999986 3566
Q ss_pred eeccCCChHHHHHHHHHhhcCCCCEEEeC--C------------C--Cccc-ccceecCCCcHHHHHhHHHHHHHHHHHH
Q 048728 212 AFTVPQPEEAMRVLEENASKLDVPLQVVP--P------------L--DASL-LNGLKLGLEGEHQYMNAGLAVALSSTWL 274 (536)
Q Consensus 212 ~v~~~~~~~~~~vl~~~a~~~~~~l~~~~--~------------~--~~~~-~~~~~l~l~G~hq~~Na~aAia~a~~ll 274 (536)
+|+|.|++....... .. ...+..+. . + .... ...+.++++|.||++|+++|++++..+
T Consensus 224 ~v~n~Dd~~~~~~~~-~~---~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaA~a~a~~~- 298 (458)
T PRK01710 224 LVLNKDNEITNGMEK-EA---KGDVVKFSRKEKVYEGAYLKNGKLYIRGKEVCKKDDIKLKGMHNVENLLAAFCAVNDD- 298 (458)
T ss_pred EEEeCCcHHHHHHHh-hc---CCcEEEEeCCCCCCCceEEeCCEEEEcCceEEEhhhcCCccHhHHHHHHHHHHHHHhC-
Confidence 899999876543321 11 11211111 0 0 0000 113567899999999999999998643
Q ss_pred HhccccccccCCCCCCChHHHHHHHhcCC-CCCceeEEcCCCCCCCCCCCcEEEEE-CCCCHHHHHHHHHHHHHHHHhhc
Q 048728 275 QRTSQLGINYLDTTSPLPEQFIQGLTMAN-LQGRAQIVPDRYTNSETSGDLVFYLD-GAHSPESMEICARWFSLAIKEEN 352 (536)
Q Consensus 275 ~~~g~~~~~~~~~~~~~~~~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~vilD-~AHnp~si~~~l~~~~~~~~~~~ 352 (536)
++++.|.++|++|. ++||||.+... +|..+|+| |+|||+|+.++++ .
T Consensus 299 ---------------i~~~~i~~~L~~f~~~~~R~e~~~~~-------~g~~~i~Dsy~~np~s~~~al~----~----- 347 (458)
T PRK01710 299 ---------------VSIESMKKVATTFSGVEHRCEFVREI-------NGVKYYNDSIASSPTRTLAGLK----A----- 347 (458)
T ss_pred ---------------CCHHHHHHHHHhCCCCCcceEEEEEE-------CCEEEecccccCCHHHHHHHHH----h-----
Confidence 56799999999996 99999998754 46888998 7999999999887 3
Q ss_pred cccccCCCCCCCCCCCCCCCCcccCccccCCCcEEEEEecCCCCChhhhhHHHHHHHHhcCCcccEEEEecC
Q 048728 353 QQETFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFNCMSVRDPQLLLPSLMKTCARHGVYFKKALFVPN 424 (536)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg~~~drd~~~~l~~l~~~~~~~~~~~d~~i~~~~ 424 (536)
+. .++|+|+|.. + ....+..+++.+.. .+|.++++..
T Consensus 348 ----------------------------~~-~~~i~IlGg~-~--~~~~~~~l~~~~~~---~~~~vi~~G~ 384 (458)
T PRK01710 348 ----------------------------FE-KPVILIAGGY-D--KKIPFEPLAEEGYE---KIKTLILMGA 384 (458)
T ss_pred ----------------------------CC-CCEEEEeCCc-C--CCCCHHHHHHHHHh---hccEEEEECC
Confidence 22 2688998852 3 34455666666543 4789988754
No 41
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=8.1e-32 Score=288.46 Aligned_cols=241 Identities=18% Similarity=0.155 Sum_probs=167.7
Q ss_pred CCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCC
Q 048728 55 QLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMP 134 (536)
Q Consensus 55 ~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p 134 (536)
+.++|+||||||||||+.||.++|+..|.++.+.++. |.|+
T Consensus 101 ~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~~~~~Gni------------G~p~--------------------------- 141 (418)
T PRK00683 101 RYPSLGITGSTGKTTTILFLEHLLKRLGIPAFAMGNI------------GIPI--------------------------- 141 (418)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHHHcCCCeEEECCc------------CHHH---------------------------
Confidence 3479999999999999999999999999877776664 3221
Q ss_pred CHHHHHHHHHHHHHhhCCCcEEEEecccCCcccccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHccccCCCceec
Q 048728 135 SYFRFLALLAFKIFTAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKYGVPAFT 214 (536)
Q Consensus 135 ~~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k~~~~~v~ 214 (536)
++ . ..+.|++|+|+|+.+.-+.......|+++|||||++||+|+|| |+|+|+.+|..||.. +.
T Consensus 142 --l~---~-------~~~~~~~V~E~~s~~~~~~~~~~~~~~iavitNi~~dHld~~~-s~e~y~~aK~~i~~~----~~ 204 (418)
T PRK00683 142 --LD---G-------MQQPGVRVVEISSFQLADQEKSYPVLSGGMILNISDNHLDYHG-NLSAYFQAKQNIAKC----LR 204 (418)
T ss_pred --HH---H-------hhcCCEEEEEechhhhCcCcccCCCccEEEEecCChhHhccCC-CHHHHHHHHHHHHHh----hh
Confidence 11 0 1247899999999654333333334589999999999999999 999999999999852 11
Q ss_pred cCCChHHHHHHHHHhhcCCCCEEEe-CCCCcccccceecCCCcHHHHHhHHHHHHHHHH-HHHhccccccccCCCCCCCh
Q 048728 215 VPQPEEAMRVLEENASKLDVPLQVV-PPLDASLLNGLKLGLEGEHQYMNAGLAVALSST-WLQRTSQLGINYLDTTSPLP 292 (536)
Q Consensus 215 ~~~~~~~~~vl~~~a~~~~~~l~~~-~~~~~~~~~~~~l~l~G~hq~~Na~aAia~a~~-ll~~~g~~~~~~~~~~~~~~ 292 (536)
+.++... .. ....+...... ............++++|.||++|+++|++++.. + | .+.
T Consensus 205 ~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~hn~~Na~aA~a~~~~l~----g-----------~~~ 264 (418)
T PRK00683 205 NPDDLWV----GD-ERSYGHSYLEYVQEIMRLLDKGSALKPLYLHDRYNYCAAYALANEVF----P-----------ISE 264 (418)
T ss_pred Ccccccc----cc-cCCcCceeecCcchhhhhhccccccCCCccchHHHHHHHHHHHHHhc----C-----------CCH
Confidence 2221100 00 00011010000 000000001235678999999999999999987 4 4 678
Q ss_pred HHHHHHHhcC-CCCCceeEEcCCCCCCCCCCCcEEEEE-CCCCHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCC
Q 048728 293 EQFIQGLTMA-NLQGRAQIVPDRYTNSETSGDLVFYLD-GAHSPESMEICARWFSLAIKEENQQETFDFQPPNSSGSSNG 370 (536)
Q Consensus 293 ~~i~~gL~~~-~~pGR~E~v~~~~~~~~~~~~~~vilD-~AHnp~si~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (536)
+.|.++|++| .|+||||++... ++..+|+| |++||+|+.++++ .
T Consensus 265 ~~i~~~l~~~~~~~~R~e~v~~~-------~g~~~i~Ds~~t~~~s~~~al~----~----------------------- 310 (418)
T PRK00683 265 ESFLEAVATFEKPPHRMEYLGEK-------DGVHYINDSKATTVSAVEKALL----A----------------------- 310 (418)
T ss_pred HHHHHHHHhCCCCCCceEEEeec-------CCeEEEEcCCCCCHHHHHHHHH----h-----------------------
Confidence 9999999998 599999999764 46889999 6999999999886 2
Q ss_pred CCCcccCccccCCCcEEEEEec-CCCCChhhhhHHHHHHHHhcCCcccEEEEec
Q 048728 371 LPQRQHDGKIRKNSAQILLFNC-MSVRDPQLLLPSLMKTCARHGVYFKKALFVP 423 (536)
Q Consensus 371 ~~~~~~~~~~~~~~~~ilvfg~-~~drd~~~~l~~l~~~~~~~~~~~d~~i~~~ 423 (536)
. ++++++|||. ..++|+..+.+. +.+ .+|.++++.
T Consensus 311 ----------~-~~~~i~vlG~~~~~~d~~~l~~~----~~~---~~~~v~~~G 346 (418)
T PRK00683 311 ----------V-GNQVIVILGGRNKGCDFSSLLPV----LRQ---TAKHVVAMG 346 (418)
T ss_pred ----------C-CCCEEEEEcCCCCCCCHHHHHHH----HHH---hCCEEEEEC
Confidence 1 2478999995 456677655443 333 368888874
No 42
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.96 E-value=6.3e-28 Score=256.54 Aligned_cols=196 Identities=18% Similarity=0.201 Sum_probs=139.5
Q ss_pred cEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCCCH
Q 048728 57 KVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMPSY 136 (536)
Q Consensus 57 ~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p~~ 136 (536)
++|+||||||||||++|+.+||+++|..++ ++ | |.|++
T Consensus 90 ~~i~ITGT~GKTTTt~ml~~iL~~~g~~~~--gn-----------i-G~p~~---------------------------- 127 (401)
T PRK03815 90 FSIWISGTNGKTTTTQMTTHLLEDFGAVSG--GN-----------I-GTPLA---------------------------- 127 (401)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHCCCcEE--EE-----------e-cHhHH----------------------------
Confidence 499999999999999999999999884331 11 1 22110
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEecccCCcccccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHccccC---CCcee
Q 048728 137 FRFLALLAFKIFTAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKY---GVPAF 213 (536)
Q Consensus 137 fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k~---~~~~v 213 (536)
. ...+.|++|+|+|+.+ ++.+..+ +|+++|||||++||+|+|| |+|+|+.+|..|++. +..+|
T Consensus 128 ---------~--~~~~~~~~V~E~ss~~-~~~~~~~-~p~iavitNi~~dHld~~~-s~e~~~~~k~~i~~~~~~~~~~v 193 (401)
T PRK03815 128 ---------E--LDKNAKIWVLETSSFT-LHYTNKA-KPNIYLLLPITPDHLSWHG-SFENYVKAKLKPLKRMNEGDVAI 193 (401)
T ss_pred ---------h--cCCCCCEEEEECChHH-hhCCccC-CCcEEEEcCCcccchhhcC-CHHHHHHHHHHHHhCCCcCCEEE
Confidence 0 1345699999998875 4445555 7999999999999999999 999999999999874 45678
Q ss_pred ccCCChHHHHHHHHHhhcCCCCEEEeCCC-Cc---ccccceecCCCcHHHHHhHHHHHHHHHHHHHhccccccccCCCCC
Q 048728 214 TVPQPEEAMRVLEENASKLDVPLQVVPPL-DA---SLLNGLKLGLEGEHQYMNAGLAVALSSTWLQRTSQLGINYLDTTS 289 (536)
Q Consensus 214 ~~~~~~~~~~vl~~~a~~~~~~l~~~~~~-~~---~~~~~~~l~l~G~hq~~Na~aAia~a~~ll~~~g~~~~~~~~~~~ 289 (536)
+|.|++.. . ..+....++.. +. ..+..-.+.+.+.| ++|+++|++++..+ |
T Consensus 194 ~n~dd~~~----~-----~~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~-~~NalaA~a~a~~~----G----------- 248 (401)
T PRK03815 194 LPKKFKNT----P-----TKAQKIFYEDEEDLAEKFGIDSEKINFKGPF-LLDALLALAVYKIL----F----------- 248 (401)
T ss_pred Eecccccc----c-----cCCcEEEEecCCccccceeEehHhcCCchHH-HHHHHHHHHHHHHh----C-----------
Confidence 88887642 1 01222222110 00 00000123355655 99999999999988 4
Q ss_pred CChHHHHHHHhcCC-CCCceeEEcCCCCCCCCCCCcEEEEEC-CCCHHHHHHHHH
Q 048728 290 PLPEQFIQGLTMAN-LQGRAQIVPDRYTNSETSGDLVFYLDG-AHSPESMEICAR 342 (536)
Q Consensus 290 ~~~~~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~vilD~-AHnp~si~~~l~ 342 (536)
. +.+.++|++|. +++|||++... +++.+|+|+ +.||+|+..+++
T Consensus 249 ~--~~~~~~L~~f~~~~~R~e~~~~~-------~gv~~idDs~~tn~~a~~~al~ 294 (401)
T PRK03815 249 D--ELDYERLNAFKIGKHKLEEFRDK-------QGRLWVDDSKATNVDATLQALK 294 (401)
T ss_pred c--HHHHHHHHhCCCCCceEEEEEEE-------CCEEEEECCCCCCHHHHHHHHH
Confidence 2 45667899995 89999999764 468899997 889998777765
No 43
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.93 E-value=7e-25 Score=248.65 Aligned_cols=219 Identities=22% Similarity=0.265 Sum_probs=156.4
Q ss_pred HHHHHHHcCCcccCCCCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHHHHH
Q 048728 40 LSDYLKILDLDVAISQLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFWWC 119 (536)
Q Consensus 40 ~~~~L~~Lg~~~p~~~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~~~v 119 (536)
...++..|....+..++++|+||||||||||++|+++||+.+|+++|+.+|. .+.+|+..+...+
T Consensus 464 ~~~Iid~L~~~~~~~ripiIaVTGTnGKTTTt~lla~iL~~~G~~vg~~~t~-------G~~i~~~~i~~gd-------- 528 (727)
T PRK14016 464 GEAIVDMLFPEGDDGRIPIVAVTGTNGKTTTTRLIAHILKLSGKRVGMTTTD-------GVYIDGRLIDKGD-------- 528 (727)
T ss_pred HHHHHHHhcccCCCCceeEEEEECCCCchHHHHHHHHHHHHcCCeEEEECCC-------CEEECCEEecccc--------
Confidence 3555655543334457899999999999999999999999999999999998 4667776553211
Q ss_pred HHhhhhhhcCCCCCCCHHHHHHHHHHHHHhhCCCcEEEEecccCCcccccccccCCcEEEEcCCCchhHhhhC-CCHHHH
Q 048728 120 YDRLKEKATEDIPMPSYFRFLALLAFKIFTAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILG-NTLGEI 198 (536)
Q Consensus 120 ~~~l~~~~~~~~~~p~~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D~tn~i~~P~vaVITnI~~DHld~lG-~tle~i 198 (536)
...|.... ..+.+..+|++|+|+|++|.+...-.+.+|+++|||||+.||++++| +|+|+|
T Consensus 529 -----------~t~p~s~~-------~ll~~~~~d~aVlE~s~~~il~~gl~~~~pdvaVvTNI~~DHL~~~~~~t~E~~ 590 (727)
T PRK14016 529 -----------CTGPKSAR-------RVLMNPDVEAAVLETARGGILREGLAYDRCDVGVVTNIGEDHLGLGGINTLEDL 590 (727)
T ss_pred -----------ccCHHHHH-------HHhcCCCCCEEEEEcCCCchhhcCCcccccCeEEEcCCCHHHhhccCCCCHHHH
Confidence 01121111 12346688999999999887654433448999999999999999885 699999
Q ss_pred HHHHHcccc---CCCceeccCCChHHHHHHHHHhhcCCCCEEEeC--C-----------------CC-------ccc---
Q 048728 199 AGEKAGIFK---YGVPAFTVPQPEEAMRVLEENASKLDVPLQVVP--P-----------------LD-------ASL--- 246 (536)
Q Consensus 199 a~~Ka~I~k---~~~~~v~~~~~~~~~~vl~~~a~~~~~~l~~~~--~-----------------~~-------~~~--- 246 (536)
+..|+.+++ +++.+|+|.||+.+..+.. .+ .+.+..+. . .. ...
T Consensus 591 ~~~K~~i~~~v~~~g~aVlNaDD~~~~~~~~-~~---~~~vi~fs~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~ 666 (727)
T PRK14016 591 AKVKRVVVEAVKPDGYAVLNADDPMVAAMAE-RC---KGKVIFFSMDPDNPVIAEHRAQGGRAVYVEGDYIVLAEGGWEI 666 (727)
T ss_pred HHHHHHHHhhhCCCCeEEEcCCCHHHHHHHH-hC---CCcEEEEeCCCCChHHHHHHHhCCceEEEeCCEEEEEeCCcce
Confidence 999999985 4566899999986544322 21 22221111 0 00 000
Q ss_pred ----ccceecCCCc--HHHHHhHHHHHHHHHHHHHhccccccccCCCCCCChHHHHHHHhcCC-----CCCceeE
Q 048728 247 ----LNGLKLGLEG--EHQYMNAGLAVALSSTWLQRTSQLGINYLDTTSPLPEQFIQGLTMAN-----LQGRAQI 310 (536)
Q Consensus 247 ----~~~~~l~l~G--~hq~~Na~aAia~a~~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~~~-----~pGR~E~ 310 (536)
...+.+.++| .||++|+++|+++++.+ | ++++.|.++|++|. .||||+.
T Consensus 667 ~~~~~~~i~l~~~G~~~hnv~NalAAiAaa~~l----G-----------i~~~~I~~~L~sF~~~~~~~pGR~n~ 726 (727)
T PRK14016 667 RIISLADIPLTLGGKAGFNIENALAAIAAAWAL----G-----------IDIELIRAGLRTFVSDAAQAPGRFNL 726 (727)
T ss_pred eeccccccceecCCcchhhHHHHHHHHHHHHHc----C-----------CCHHHHHHHHHhcCCCccCCCccccc
Confidence 0123343366 79999999999999998 5 78899999999995 8999985
No 44
>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....
Probab=99.92 E-value=9.4e-25 Score=208.45 Aligned_cols=165 Identities=26% Similarity=0.323 Sum_probs=111.6
Q ss_pred EcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCCCHHHHH
Q 048728 61 VAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMPSYFRFL 140 (536)
Q Consensus 61 VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p~~fe~l 140 (536)
||||||||||++||.+||+++|++++.+++- ++.+.
T Consensus 1 ITGT~GKTTTt~ml~~iL~~~g~~~~~~~~~------------------------------------------~~~~~-- 36 (188)
T PF08245_consen 1 ITGTNGKTTTTRMLAHILSAAGKVVGTIGNT------------------------------------------NNQIG-- 36 (188)
T ss_dssp EESSSSHHHHHHHHHHHHHHTTEEEEEESSC------------------------------------------HHHHH--
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCcccccccc------------------------------------------cchHH--
Confidence 8999999999999999999999988877652 00011
Q ss_pred HHHHHHHHhhCCCcEEEEecccCCccc-ccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHcccc---CCCceeccC
Q 048728 141 ALLAFKIFTAEQIDVAILEVGLGGRFD-ATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFK---YGVPAFTVP 216 (536)
Q Consensus 141 t~la~~~f~~~~~d~aVlEvg~gg~~D-~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k---~~~~~v~~~ 216 (536)
....+..+.+.++|++|+|+|+++..+ ....+.+|+++|||||++||+++++ |+++|+.+|+.+++ +++.+|+|.
T Consensus 37 ~~~~~~~~~~~~~~~~V~E~~~~~~~~~~l~~~~~p~i~viTni~~dH~~~~~-s~~~~~~~k~~~~~~~~~~~~~v~n~ 115 (188)
T PF08245_consen 37 LPLLLLNAREGGADIAVLEVSEGGLGDERLSFLLKPDIAVITNIGPDHLDRFG-SIEEYAEAKAKIFRGLKPGGVAVLNA 115 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEESSSCCCTSTTSGGSBESEEEE----SSSHCCTS-SHHHHHHHHHGGHTTTSTTSEEEEET
T ss_pred HHHHHhhhcccccceeeeeccCCccccceeeeeeehheeeeceecccccccCC-CHHHHHHHHHhhhhhcccceEEEecC
Confidence 111112344568999999999974332 2222248999999999999999998 99999999999998 455799999
Q ss_pred CChHHHHHHHHHhhc-------CCCCEEEe-----CC---CC----cccccceecCCCcHHHHHhHHHHHHHH
Q 048728 217 QPEEAMRVLEENASK-------LDVPLQVV-----PP---LD----ASLLNGLKLGLEGEHQYMNAGLAVALS 270 (536)
Q Consensus 217 ~~~~~~~vl~~~a~~-------~~~~l~~~-----~~---~~----~~~~~~~~l~l~G~hq~~Na~aAia~a 270 (536)
||+.....+...... ...++... .. +. ......+.++++|.||++|+++|+++|
T Consensus 116 dd~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~l~G~hn~~NalaA~a~a 188 (188)
T PF08245_consen 116 DDPELAEIAANSKCKVITFGLDNSADIRASNISYSEEGGRFRIISYNGEEFEIELPLPGKHNVENALAAIAAA 188 (188)
T ss_dssp TSHHHHHHHHHHTTTEEEEESSSSSEEEEEEEEEETTEEEEEEEEETTEEEEEEESSSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCcEEEeccCcccceeeeeEEEecCCcEEEEEEecCceEEEEecCCCHHHHHHHHHHHHhC
Confidence 998554444332111 11111100 00 00 011234789999999999999999986
No 45
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=99.40 E-value=9.4e-13 Score=111.21 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=59.8
Q ss_pred CCCceeEEcCCCCCCCCCCCcEEEEECCCCHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCcccCccccCC
Q 048728 304 LQGRAQIVPDRYTNSETSGDLVFYLDGAHSPESMEICARWFSLAIKEENQQETFDFQPPNSSGSSNGLPQRQHDGKIRKN 383 (536)
Q Consensus 304 ~pGR~E~v~~~~~~~~~~~~~~vilD~AHnp~si~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (536)
||||||++... +++.||+||||||+|++++++++++. ++.
T Consensus 1 vpgR~e~v~~~-------~~~~vi~D~ahNp~s~~a~l~~l~~~---------------------------------~~~ 40 (91)
T PF02875_consen 1 VPGRMEVVREP-------NGPTVIDDYAHNPDSIRALLEALKEL---------------------------------YPK 40 (91)
T ss_dssp ETTSSEEEEEE-------TTEEEEEET--SHHHHHHHHHHHHHH---------------------------------CTT
T ss_pred CCCCcEEEeeC-------CCcEEEEECCCCHHHHHHHHHHHHHh---------------------------------ccC
Confidence 79999999985 57999999999999999999955543 467
Q ss_pred CcEEEEEecCCC---CChhhhhHHHHHHHHhcCCcccEEEEecC
Q 048728 384 SAQILLFNCMSV---RDPQLLLPSLMKTCARHGVYFKKALFVPN 424 (536)
Q Consensus 384 ~~~ilvfg~~~d---rd~~~~l~~l~~~~~~~~~~~d~~i~~~~ 424 (536)
+++++|||++++ |+.... ..+++.+.+ ..|.++++++
T Consensus 41 ~~~i~V~G~~~d~g~~~~~~~-~~~~~~~~~---~~d~vi~~~~ 80 (91)
T PF02875_consen 41 GRIIAVFGAMGDLGSKDKDFH-EEIGELAAQ---LADVVILTGD 80 (91)
T ss_dssp SEEEEEEEEBTT-HTSHHHCH-HHHHHHHTT---CSSEEEEETS
T ss_pred CcEEEEEccccccccccHHHH-HHHHHHHHh---cCCEEEEcCC
Confidence 899999999888 766544 567776654 4788777765
No 46
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.04 E-value=0.0034 Score=63.74 Aligned_cols=155 Identities=21% Similarity=0.272 Sum_probs=87.5
Q ss_pred HHHHHHHcCCcccCCCCcEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEe----CCc--cccccceeeeCCeecCHHH
Q 048728 40 LSDYLKILDLDVAISQLKVIHVAGT--KGKGSTCTFTESILRNCGFRTGLFT----SPH--LIDVRERFRLDGDDISEDK 111 (536)
Q Consensus 40 ~~~~L~~Lg~~~p~~~l~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~t----Sph--l~~~~Eri~inG~~is~~~ 111 (536)
-+++|.++- .-.-+-.+|||||+ .||+|...-|..-|...|+||+.+. ||. -.-..+|||.+.....+..
T Consensus 37 a~~ll~~l~--p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~v 114 (323)
T COG1703 37 ARELLRALY--PRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGV 114 (323)
T ss_pred HHHHHHHHh--hcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCe
Confidence 345555553 11124469999997 6899999999999999999998763 441 0001122222211111111
Q ss_pred HHHHHHHHHHhhhhhhcCCCCCCCHHHHHHHHHHHHHhhCCCcEEEEec-ccC-CcccccccccCCcEEEEcCCCchhHh
Q 048728 112 FLAYFWWCYDRLKEKATEDIPMPSYFRFLALLAFKIFTAEQIDVAILEV-GLG-GRFDATNVVQKPVVCGISSLGYDHME 189 (536)
Q Consensus 112 f~~~~~~v~~~l~~~~~~~~~~p~~fe~lt~la~~~f~~~~~d~aVlEv-g~g-g~~D~tn~i~~P~vaVITnI~~DHld 189 (536)
|.+ ...+.+ ...-..--|..+...+-..++|+.++|. |.| ++.|..+.. |+.+++.+.
T Consensus 115 FiR----------s~~srG--~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~a---Dt~~~v~~p----- 174 (323)
T COG1703 115 FIR----------SSPSRG--TLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMA---DTFLVVMIP----- 174 (323)
T ss_pred EEe----------ecCCCc--cchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhc---ceEEEEecC-----
Confidence 100 000111 1111112233333455668999999998 554 466766664 555555443
Q ss_pred hhCCCHHHHHHHHHccccCCCceeccCCCh
Q 048728 190 ILGNTLGEIAGEKAGIFKYGVPAFTVPQPE 219 (536)
Q Consensus 190 ~lG~tle~ia~~Ka~I~k~~~~~v~~~~~~ 219 (536)
-.|+. +-..|+|++.-+-.+|+|..|.
T Consensus 175 g~GD~---~Q~iK~GimEiaDi~vINKaD~ 201 (323)
T COG1703 175 GAGDD---LQGIKAGIMEIADIIVINKADR 201 (323)
T ss_pred CCCcH---HHHHHhhhhhhhheeeEeccCh
Confidence 24544 4455999999887888887764
No 47
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.90 E-value=0.084 Score=52.98 Aligned_cols=156 Identities=22% Similarity=0.230 Sum_probs=77.6
Q ss_pred HHHHHHHHcCCcccCCCCcEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEe----CCc--cccccceeeeCCeecCHH
Q 048728 39 LLSDYLKILDLDVAISQLKVIHVAGT--KGKGSTCTFTESILRNCGFRTGLFT----SPH--LIDVRERFRLDGDDISED 110 (536)
Q Consensus 39 ~~~~~L~~Lg~~~p~~~l~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~t----Sph--l~~~~Eri~inG~~is~~ 110 (536)
...++|+++. ....+-.+|+|||+ .||+|...-|...|++.|.+++++. ||. -.-..+|||.+...-.+.
T Consensus 14 ~~~~ll~~l~--~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~ 91 (266)
T PF03308_consen 14 EARELLKRLY--PHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPG 91 (266)
T ss_dssp HHHHHHHHHG--GGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTT
T ss_pred HHHHHHHHHH--hhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCC
Confidence 5667777774 11235579999997 6899999999999999999999863 341 000111222110000000
Q ss_pred HHHHHHHHHHHhhhhhhcCCCCCCCHHHHHHHHHHHHHhhCCCcEEEEec-ccCC-cccccccccCCcEEEEcCCCchhH
Q 048728 111 KFLAYFWWCYDRLKEKATEDIPMPSYFRFLALLAFKIFTAEQIDVAILEV-GLGG-RFDATNVVQKPVVCGISSLGYDHM 188 (536)
Q Consensus 111 ~f~~~~~~v~~~l~~~~~~~~~~p~~fe~lt~la~~~f~~~~~d~aVlEv-g~gg-~~D~tn~i~~P~vaVITnI~~DHl 188 (536)
.| +....+.+ ..--..--|.-+...+...+.|++++|. |.|+ +.|...+. +-.+.|++.=.-|
T Consensus 92 vf----------IRS~atRG--~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~a-D~~v~v~~Pg~GD-- 156 (266)
T PF03308_consen 92 VF----------IRSMATRG--SLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADMA-DTVVLVLVPGLGD-- 156 (266)
T ss_dssp EE----------EEEE---S--SHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTTS-SEEEEEEESSTCC--
T ss_pred EE----------EeecCcCC--CCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHhc-CeEEEEecCCCcc--
Confidence 00 00000100 0111111233333445668999999997 7754 77776665 2233444444333
Q ss_pred hhhCCCHHHHHHHHHccccCCCceeccCCCh
Q 048728 189 EILGNTLGEIAGEKAGIFKYGVPAFTVPQPE 219 (536)
Q Consensus 189 d~lG~tle~ia~~Ka~I~k~~~~~v~~~~~~ 219 (536)
.++ ..|+||+.-.-.+|+|..|.
T Consensus 157 -----~iQ---~~KaGimEiaDi~vVNKaD~ 179 (266)
T PF03308_consen 157 -----EIQ---AIKAGIMEIADIFVVNKADR 179 (266)
T ss_dssp -----CCC---TB-TTHHHH-SEEEEE--SH
T ss_pred -----HHH---HHhhhhhhhccEEEEeCCCh
Confidence 333 33788888766777887663
No 48
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.89 E-value=0.28 Score=50.50 Aligned_cols=48 Identities=17% Similarity=0.224 Sum_probs=37.9
Q ss_pred HHHHHHHcCCcccCCCCcEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEe
Q 048728 40 LSDYLKILDLDVAISQLKVIHVAGT--KGKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 40 ~~~~L~~Lg~~~p~~~l~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~t 89 (536)
.+.+|+.+. .......+|+|+|. .||||++..+...|...|++++++.
T Consensus 20 ~~~~~~~~~--~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~ 69 (300)
T TIGR00750 20 AKQLLDRIM--PYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIA 69 (300)
T ss_pred HHHHHHhCC--cccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 566777764 22345679999996 4799999999999999999998765
No 49
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=93.49 E-value=0.17 Score=54.09 Aligned_cols=56 Identities=21% Similarity=0.126 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHHHcCCc--c-cCCCCcEEEEc---CCCchhHHHHHHHHHHHhCCCCEEEEe
Q 048728 34 GDRFELLSDYLKILDLD--V-AISQLKVIHVA---GTKGKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 34 ~~~l~~~~~~L~~Lg~~--~-p~~~l~vI~VT---GTnGKTST~~ml~~IL~~~G~k~g~~t 89 (536)
...|+++.++.+.++.. . +..+.++|.|+ |-.|||||+.-|++.|...|+||.++-
T Consensus 81 ~ytl~eI~~lr~~~~~~~~r~~~~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlID 142 (387)
T PHA02519 81 GYTIDQISHMRDHFGNPNQRPDDKNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIE 142 (387)
T ss_pred eEcHHHHHHHHHHhhccccCcCCCCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Confidence 47899999999888732 1 33457899999 778899999999999999999997653
No 50
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=93.26 E-value=0.2 Score=53.62 Aligned_cols=55 Identities=24% Similarity=0.146 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHHHcCCc---ccCCCCcEEEEc---CCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 34 GDRFELLSDYLKILDLD---VAISQLKVIHVA---GTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 34 ~~~l~~~~~~L~~Lg~~---~p~~~l~vI~VT---GTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
...|++++++++.++.. .+..+.++|.|+ |=.||||||.-|++.|...|+||.++
T Consensus 81 ~ftL~ei~~lr~~~~~~~~r~~~~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlI 141 (388)
T PRK13705 81 GYTIEQINHMRDVFGTRLRRAEDVFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLV 141 (388)
T ss_pred CcCHHHHHHHHHhhcccccccCCCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEE
Confidence 47899999998887632 244567899999 88889999999999999999999775
No 51
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=93.01 E-value=1.1 Score=45.28 Aligned_cols=50 Identities=22% Similarity=0.304 Sum_probs=34.6
Q ss_pred HHHHHHcCCcccCCCCcEEEEcCC--CchhHHHHHHHHHHHhCCCC--EEEEeCC
Q 048728 41 SDYLKILDLDVAISQLKVIHVAGT--KGKGSTCTFTESILRNCGFR--TGLFTSP 91 (536)
Q Consensus 41 ~~~L~~Lg~~~p~~~l~vI~VTGT--nGKTST~~ml~~IL~~~G~k--~g~~tSp 91 (536)
...+..|+- .....--+|+|+|+ .||+||+..+..+|+..+-. +-++++-
T Consensus 68 ~~~~~~l~~-~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmD 121 (283)
T COG1072 68 AELLRFLGT-NNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMD 121 (283)
T ss_pred HHHHHHhcc-CCCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEecc
Confidence 444555552 22233359999998 58999999999999988754 5555554
No 52
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=92.48 E-value=0.33 Score=52.28 Aligned_cols=37 Identities=30% Similarity=0.381 Sum_probs=32.2
Q ss_pred cCCCCcEEEEc---CCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 52 AISQLKVIHVA---GTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 52 p~~~l~vI~VT---GTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
|..+.++|.|+ |-.|||||+.-|++.|...|+||.++
T Consensus 117 ~~~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlI 156 (405)
T PRK13869 117 GSEHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAV 156 (405)
T ss_pred CCCCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 44567899999 77789999999999999999999764
No 53
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.46 E-value=0.68 Score=48.48 Aligned_cols=49 Identities=16% Similarity=0.164 Sum_probs=36.2
Q ss_pred HHHHHHHcCCcccCCCCcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 40 LSDYLKILDLDVAISQLKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 40 ~~~~L~~Lg~~~p~~~l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
...+++++- ....+..+|+|+|.. ||||.+..+...|+..|++++++.-
T Consensus 42 ~~~l~~~~~--~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~ 92 (332)
T PRK09435 42 AQELLDALL--PHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAV 92 (332)
T ss_pred HHHHHHHHh--hcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 345555552 112345699999975 7999999999999999999987653
No 54
>COG2403 Predicted GTPase [General function prediction only]
Probab=91.85 E-value=1 Score=47.28 Aligned_cols=37 Identities=30% Similarity=0.548 Sum_probs=33.8
Q ss_pred CCcEEEEcCC---CchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 55 QLKVIHVAGT---KGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 55 ~l~vI~VTGT---nGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
..|+|.|||| .|||++++++..+|++.||++....-|
T Consensus 125 ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrhP 164 (449)
T COG2403 125 EKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRHP 164 (449)
T ss_pred cCceEEEEEeccccchhHHHHHHHHHHHHcCCceEEEecC
Confidence 4579999987 699999999999999999999988888
No 55
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=91.01 E-value=0.61 Score=45.13 Aligned_cols=52 Identities=17% Similarity=0.056 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcCCc-ccCCCCcEEEEc---CCCchhHHHHHHHHHHHh-CCCCEEEE
Q 048728 37 FELLSDYLKILDLD-VAISQLKVIHVA---GTKGKGSTCTFTESILRN-CGFRTGLF 88 (536)
Q Consensus 37 l~~~~~~L~~Lg~~-~p~~~l~vI~VT---GTnGKTST~~ml~~IL~~-~G~k~g~~ 88 (536)
+.+++..|....+. ++....++|.|+ |--||||++..|++.|.. .|+||.++
T Consensus 15 ~~~l~~~l~~~~~~~~~~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlv 71 (207)
T TIGR03018 15 FRKIKRPLLANAFSANRKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLI 71 (207)
T ss_pred HHHHHHHHHHhccccccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 44444444433322 344567899999 567999999999999975 69998765
No 56
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=90.92 E-value=0.51 Score=47.64 Aligned_cols=52 Identities=19% Similarity=0.102 Sum_probs=41.3
Q ss_pred HHHHHHHHHHcCCcccCCCCcEEEEc---CCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 37 FELLSDYLKILDLDVAISQLKVIHVA---GTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 37 l~~~~~~L~~Lg~~~p~~~l~vI~VT---GTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
.+.++.+...|.+.......++|.|| |--||||++..|+..|...|+||.++
T Consensus 84 ~e~~~~l~~~l~~~~~~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllI 138 (274)
T TIGR03029 84 VEALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLI 138 (274)
T ss_pred HHHHHHHHHHhhhhccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 46677777777654445567899999 66799999999999999999998764
No 57
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=90.53 E-value=0.31 Score=48.40 Aligned_cols=37 Identities=30% Similarity=0.420 Sum_probs=34.5
Q ss_pred EEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccc
Q 048728 58 VIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLI 94 (536)
Q Consensus 58 vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~ 94 (536)
+|+|+|.-||||+..-|..-|+..|+++.+-||-|+.
T Consensus 1 vi~~vG~gGKTtl~~~l~~~~~~~g~~v~~TTTT~m~ 37 (232)
T TIGR03172 1 VIAFVGAGGKTSTMFWLAAEYRKEGYRVLVTTTTRMF 37 (232)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHCCCeEEEECCcccc
Confidence 5899999999999999999999999999999998764
No 58
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=90.41 E-value=0.68 Score=44.51 Aligned_cols=47 Identities=19% Similarity=0.421 Sum_probs=34.2
Q ss_pred HHHHHHHHHHcCCcccCCCCcEEEEcCCC---chhHHHHHHHHHHHhCCCCEEEE
Q 048728 37 FELLSDYLKILDLDVAISQLKVIHVAGTK---GKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 37 l~~~~~~L~~Lg~~~p~~~l~vI~VTGTn---GKTST~~ml~~IL~~~G~k~g~~ 88 (536)
+.+++.-|...+ ...++|.|++++ ||||++..|+..|...|++|.++
T Consensus 3 ~~~l~~~l~~~~-----~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllI 52 (204)
T TIGR01007 3 YNAIRTNIQFSG-----AEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLI 52 (204)
T ss_pred HHHHHHHHhhhc-----CCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 344444444333 337889998554 79999999999999999998654
No 59
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=90.00 E-value=1.3 Score=48.42 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=29.9
Q ss_pred CcEEEEcCCC---chhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 56 LKVIHVAGTK---GKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 56 l~vI~VTGTn---GKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
++.|-||||. |||+++.-|...|++.|++++.|-.
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~ 40 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV 40 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence 4568888875 5999999999999999999988754
No 60
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=89.89 E-value=0.41 Score=44.84 Aligned_cols=37 Identities=24% Similarity=0.421 Sum_probs=32.7
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeCCc
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTSPH 92 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tSph 92 (536)
+++++|+|.+ ||||...=|-..|++.|++++.+-..|
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~h 40 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAH 40 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecC
Confidence 5799999975 899999999999999999999887665
No 61
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=89.07 E-value=0.51 Score=47.21 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=26.7
Q ss_pred cEEEEc--CCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 57 KVIHVA--GTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 57 ~vI~VT--GTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
++|+|. |-.||||||.-|+..|...|+||.++
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlli 35 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIV 35 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 344444 78899999999999999999999765
No 62
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=88.78 E-value=1.2 Score=46.66 Aligned_cols=52 Identities=25% Similarity=0.310 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCCc-ccCCCCcEEEE----cCCCchhHHHHHHHHHHHhCCCCEEEEe
Q 048728 38 ELLSDYLKILDLD-VAISQLKVIHV----AGTKGKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 38 ~~~~~~L~~Lg~~-~p~~~l~vI~V----TGTnGKTST~~ml~~IL~~~G~k~g~~t 89 (536)
-+.++.+=+.|+- ......+||.| .|-.|||+++.+|...|++.|++++.++
T Consensus 30 ~~~R~~~y~~~~~~~~~~~~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ils 86 (325)
T PRK00652 30 AALRRLLYRLGLKKPYRAPVPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVS 86 (325)
T ss_pred HHHHHHHHHhCCCcccCCCCCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEEC
Confidence 3455555555542 22235679998 7999999999999999999999998765
No 63
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=88.56 E-value=2.9 Score=43.53 Aligned_cols=36 Identities=25% Similarity=0.169 Sum_probs=29.6
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
-.+|++.|-| |||||++.|+..|+..|.++.+.+..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 4577777754 79999999999999999998887653
No 64
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=88.51 E-value=1.1 Score=47.77 Aligned_cols=37 Identities=30% Similarity=0.371 Sum_probs=31.3
Q ss_pred cCCCCcEEEEc---CCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 52 AISQLKVIHVA---GTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 52 p~~~l~vI~VT---GTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
+..+.++|.|+ |-.||||||.-|+..|...|+||.++
T Consensus 100 ~g~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlI 139 (387)
T TIGR03453 100 GGEHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAI 139 (387)
T ss_pred CCCCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 34566899988 67789999999999999999999764
No 65
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=88.24 E-value=0.68 Score=37.69 Aligned_cols=31 Identities=29% Similarity=0.297 Sum_probs=26.6
Q ss_pred EEEcCC--CchhHHHHHHHHHHHhCCCCEEEEe
Q 048728 59 IHVAGT--KGKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 59 I~VTGT--nGKTST~~ml~~IL~~~G~k~g~~t 89 (536)
|.|+|. -||||++..+...|++.|+++.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 556655 5999999999999999999998766
No 66
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=87.33 E-value=0.81 Score=44.35 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=26.3
Q ss_pred EEEEc--CCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 58 VIHVA--GTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 58 vI~VT--GTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
+|+|+ |-.|||||+..|+..|.+.|+||.++
T Consensus 2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvLli 34 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQV 34 (212)
T ss_pred EEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 56666 56689999999999999999998764
No 67
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=86.76 E-value=0.87 Score=45.99 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=28.0
Q ss_pred cEEEEc--CCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 57 KVIHVA--GTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 57 ~vI~VT--GTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
++|+|+ |=-|||||+.-|+..|.+.|+||.++
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVllv 35 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLV 35 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEE
Confidence 577777 56689999999999999999999876
No 68
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=85.40 E-value=0.93 Score=43.78 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=25.1
Q ss_pred EEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 58 VIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 58 vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
+||.|| .|||||++=|++.++..|.++++++.-
T Consensus 6 lvGptG-vGKTTt~aKLAa~~~~~~~~v~lis~D 38 (196)
T PF00448_consen 6 LVGPTG-VGKTTTIAKLAARLKLKGKKVALISAD 38 (196)
T ss_dssp EEESTT-SSHHHHHHHHHHHHHHTT--EEEEEES
T ss_pred EECCCC-CchHhHHHHHHHHHhhccccceeecCC
Confidence 455555 489999999999999889999987753
No 69
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=85.12 E-value=4.6 Score=37.04 Aligned_cols=57 Identities=21% Similarity=0.223 Sum_probs=37.5
Q ss_pred hCCCcEEEEecccCCcccccccccCCc-EEEEcCCCchhHhhhCCCHHHHHHHHHccccCCCceeccC
Q 048728 150 AEQIDVAILEVGLGGRFDATNVVQKPV-VCGISSLGYDHMEILGNTLGEIAGEKAGIFKYGVPAFTVP 216 (536)
Q Consensus 150 ~~~~d~aVlEvg~gg~~D~tn~i~~P~-vaVITnI~~DHld~lG~tle~ia~~Ka~I~k~~~~~v~~~ 216 (536)
..+.|++++++ .|-..+...++...| +.|+|+-+ -.+.|+--|..+|+....+++|.
T Consensus 89 ~~~~D~iiIDt-aG~~~~~~~~~~~Ad~~ivv~tpe---------~~D~y~~~k~~~~~~~~~~~~~k 146 (148)
T cd03114 89 AAGFDVIIVET-VGVGQSEVDIASMADTTVVVMAPG---------AGDDIQAIKAGIMEIADIVVVNK 146 (148)
T ss_pred hcCCCEEEEEC-CccChhhhhHHHhCCEEEEEECCC---------chhHHHHhhhhHhhhcCEEEEeC
Confidence 45899999999 443333333333333 56677766 24578888999998776666664
No 70
>PHA02518 ParA-like protein; Provisional
Probab=85.11 E-value=1.2 Score=42.54 Aligned_cols=31 Identities=32% Similarity=0.354 Sum_probs=25.8
Q ss_pred EEEEc---CCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 58 VIHVA---GTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 58 vI~VT---GTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
+|.|+ |-.||||++..|+..|...|++|.++
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlli 35 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLV 35 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 45555 66779999999999999999998764
No 71
>PRK15453 phosphoribulokinase; Provisional
Probab=84.93 E-value=1.4 Score=45.11 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=27.7
Q ss_pred CCCcEEEEcCC--CchhHHHHHHHHHHHhCCCCEEE
Q 048728 54 SQLKVIHVAGT--KGKGSTCTFTESILRNCGFRTGL 87 (536)
Q Consensus 54 ~~l~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~ 87 (536)
.+-++|+|||+ .||||++..++.+|+..|.++.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~v 38 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAV 38 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEE
Confidence 45579999997 47999999999999887765543
No 72
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=84.92 E-value=1.2 Score=43.93 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=30.2
Q ss_pred CcEEEEcCCC---chhHHHHHHHHHHHhCCCCEEEEe
Q 048728 56 LKVIHVAGTK---GKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 56 l~vI~VTGTn---GKTST~~ml~~IL~~~G~k~g~~t 89 (536)
++.+-||||+ |||.+++.|.+.|++.|++++.|-
T Consensus 2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~K 38 (223)
T COG0132 2 MKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYK 38 (223)
T ss_pred CceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEEC
Confidence 4678899996 999999999999999999987764
No 73
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=84.89 E-value=1.3 Score=44.86 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=27.3
Q ss_pred cEEEEc--CCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 57 KVIHVA--GTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 57 ~vI~VT--GTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
++|+|+ |=.||||||.-|+..|.+.|+||.++
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlI 35 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVV 35 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 567777 45679999999999999999999775
No 74
>PRK10037 cell division protein; Provisional
Probab=84.37 E-value=1.4 Score=43.97 Aligned_cols=32 Identities=16% Similarity=0.120 Sum_probs=27.4
Q ss_pred cEEEEc---CCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 57 KVIHVA---GTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 57 ~vI~VT---GTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
++|+|+ |=.|||||+.-|+..|.+.|+||.++
T Consensus 2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlI 36 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVLVI 36 (250)
T ss_pred cEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEE
Confidence 477777 56689999999999999999998764
No 75
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=84.21 E-value=1.4 Score=43.23 Aligned_cols=32 Identities=28% Similarity=0.233 Sum_probs=27.3
Q ss_pred cEEEEcC---CCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 57 KVIHVAG---TKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 57 ~vI~VTG---TnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
++|.|++ -.||||++.-|+..|.+.|+||.++
T Consensus 2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~Vlli 36 (246)
T TIGR03371 2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAI 36 (246)
T ss_pred cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence 5777764 6699999999999999999998764
No 76
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=83.78 E-value=11 Score=40.69 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=23.3
Q ss_pred EEEcCC---CchhHHHHHHHHHHHhCCCCEE
Q 048728 59 IHVAGT---KGKGSTCTFTESILRNCGFRTG 86 (536)
Q Consensus 59 I~VTGT---nGKTST~~ml~~IL~~~G~k~g 86 (536)
|.|+|| .||||++.-|-..|++.|++|-
T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vq 33 (451)
T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRRRGLKVQ 33 (451)
T ss_pred eEEecCCCCCcHHHHHHHHHHHHHhcCCccc
Confidence 566666 5999999999999999987663
No 77
>PRK07667 uridine kinase; Provisional
Probab=83.76 E-value=3.5 Score=39.44 Aligned_cols=35 Identities=14% Similarity=0.255 Sum_probs=30.8
Q ss_pred cEEEEcC--CCchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 57 KVIHVAG--TKGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 57 ~vI~VTG--TnGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
.+|+|+| -.||||++..|...|+..|.++.++...
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~D 54 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHID 54 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 6999998 4789999999999999999988777655
No 78
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.59 E-value=2.6 Score=44.69 Aligned_cols=84 Identities=26% Similarity=0.407 Sum_probs=51.3
Q ss_pred CcEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcC-CC-
Q 048728 56 LKVIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATE-DI- 131 (536)
Q Consensus 56 l~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~-~~- 131 (536)
..||-+.|- .||||||.=++..++..|+|+++...- -.....| ++|+.+.+. .+
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaD--------------TFRagAf--------DQLkqnA~k~~iP 158 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCAD--------------TFRAGAF--------DQLKQNATKARVP 158 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeec--------------ccccchH--------HHHHHHhHhhCCe
Confidence 346655553 479999999999999999999886543 1111222 334432211 10
Q ss_pred -----CCCCHHHHHHHHHHHHHhhCCCcEEEEeccc
Q 048728 132 -----PMPSYFRFLALLAFKIFTAEQIDVAILEVGL 162 (536)
Q Consensus 132 -----~~p~~fe~lt~la~~~f~~~~~d~aVlEvg~ 162 (536)
....+.. +...+...|.++++|+.++-.+-
T Consensus 159 ~ygsyte~dpv~-ia~egv~~fKke~fdvIIvDTSG 193 (483)
T KOG0780|consen 159 FYGSYTEADPVK-IASEGVDRFKKENFDVIIVDTSG 193 (483)
T ss_pred eEecccccchHH-HHHHHHHHHHhcCCcEEEEeCCC
Confidence 1112222 23445577889999999998864
No 79
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=83.57 E-value=1.6 Score=43.22 Aligned_cols=37 Identities=24% Similarity=0.366 Sum_probs=32.0
Q ss_pred CcEEEEcC--CCchhHHHHHHHHHHHhCCCCEEEEeCCc
Q 048728 56 LKVIHVAG--TKGKGSTCTFTESILRNCGFRTGLFTSPH 92 (536)
Q Consensus 56 l~vI~VTG--TnGKTST~~ml~~IL~~~G~k~g~~tSph 92 (536)
+++|+|+| -.||||++.-|...|+..|++++.+-..|
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~~~ 39 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAKHTH 39 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 46899999 67999999999999999999999986544
No 80
>PRK05439 pantothenate kinase; Provisional
Probab=83.45 E-value=17 Score=37.74 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=26.8
Q ss_pred CcEEEEcCC--CchhHHHHHHHHHHHhC--CCCEEEEe
Q 048728 56 LKVIHVAGT--KGKGSTCTFTESILRNC--GFRTGLFT 89 (536)
Q Consensus 56 l~vI~VTGT--nGKTST~~ml~~IL~~~--G~k~g~~t 89 (536)
--+|+|||+ .||||+|..|..+|... |.++.+++
T Consensus 86 ~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~ 123 (311)
T PRK05439 86 PFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVT 123 (311)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 358999996 57999999999999864 55666544
No 81
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=83.25 E-value=1.5 Score=44.36 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=27.2
Q ss_pred cEEEEc--CCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 57 KVIHVA--GTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 57 ~vI~VT--GTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
++|.|+ |=.||||||.-|+..|.+.|+||.++
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLli 35 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVV 35 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEE
Confidence 466666 56789999999999999999998765
No 82
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=83.16 E-value=6.4 Score=42.81 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=27.1
Q ss_pred EEEEcCC---CchhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 58 VIHVAGT---KGKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 58 vI~VTGT---nGKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
.|-|||| .|||+++..|.+.|++.|+++..|-+
T Consensus 3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~ 38 (433)
T PRK13896 3 GFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKA 38 (433)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEee
Confidence 3556665 59999999999999999999876653
No 83
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=83.00 E-value=1.7 Score=43.07 Aligned_cols=32 Identities=28% Similarity=0.348 Sum_probs=27.2
Q ss_pred cEEEEc---CCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 57 KVIHVA---GTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 57 ~vI~VT---GTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
++|.|+ |=.|||||+..|+..|...|++|.++
T Consensus 2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~Vlli 36 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALF 36 (231)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence 577777 55679999999999999999998764
No 84
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=82.85 E-value=1.5 Score=43.21 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=29.2
Q ss_pred cEEEEc---CCCchhHHHHHHHHHHHhCCCCEEEEe
Q 048728 57 KVIHVA---GTKGKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 57 ~vI~VT---GTnGKTST~~ml~~IL~~~G~k~g~~t 89 (536)
++|.|| |--|||||++-|...|-..|.||.++-
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD 38 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLID 38 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEe
Confidence 578888 778999999999999999999998753
No 85
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=82.53 E-value=1.7 Score=43.57 Aligned_cols=31 Identities=26% Similarity=0.247 Sum_probs=25.9
Q ss_pred EEEEc--CCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 58 VIHVA--GTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 58 vI~VT--GTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
+|+|+ |-.||||||.-|+..|...|+||.++
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlli 34 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQI 34 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 35555 56789999999999999999999764
No 86
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=82.18 E-value=1.9 Score=44.29 Aligned_cols=34 Identities=26% Similarity=0.286 Sum_probs=29.0
Q ss_pred CCcEEEEc--CCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 55 QLKVIHVA--GTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 55 ~l~vI~VT--GTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
++++|+|. |--|||||+.-|+..|.+.|+||.++
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLli 38 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIV 38 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 45677776 56789999999999999999999876
No 87
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=81.91 E-value=1.9 Score=43.39 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=26.9
Q ss_pred cEEEEc--CCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 57 KVIHVA--GTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 57 ~vI~VT--GTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
++|+|+ |-.||||||.-|+..|.+.|+||.++
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLli 36 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQI 36 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 466665 66789999999999999999998764
No 88
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=81.91 E-value=2.9 Score=42.52 Aligned_cols=36 Identities=25% Similarity=0.219 Sum_probs=29.9
Q ss_pred CCcEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 55 QLKVIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 55 ~l~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
+.++|.++|. .|||||++-|+..|...|++++++..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~ 108 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAG 108 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4568888875 57999999999999999999988654
No 89
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=81.90 E-value=1.7 Score=41.61 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=24.4
Q ss_pred EEEEcC--CCchhHHHHHHHHHHHhCCCC
Q 048728 58 VIHVAG--TKGKGSTCTFTESILRNCGFR 84 (536)
Q Consensus 58 vI~VTG--TnGKTST~~ml~~IL~~~G~k 84 (536)
||+|+| ..||||++..|..+|.+.|..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~ 29 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIP 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcC
Confidence 689997 679999999999999998876
No 90
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=81.83 E-value=1.9 Score=44.43 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=26.2
Q ss_pred EEEEc--CCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 58 VIHVA--GTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 58 vI~VT--GTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
+|+|. |--|||||+..|+..|.+.|+||.++
T Consensus 2 vIav~gKGGvGKTT~a~nLA~~La~~g~rVLlI 34 (296)
T TIGR02016 2 IIAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQL 34 (296)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 45554 67899999999999999999999765
No 91
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=81.76 E-value=1.9 Score=42.64 Aligned_cols=32 Identities=25% Similarity=0.289 Sum_probs=27.4
Q ss_pred cEEEEcC---CCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 57 KVIHVAG---TKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 57 ~vI~VTG---TnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
++|.|++ -.||||++.-++..|...|++|.++
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlli 36 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLI 36 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEE
Confidence 4677764 6689999999999999999999875
No 92
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=81.68 E-value=1.9 Score=43.56 Aligned_cols=31 Identities=23% Similarity=0.272 Sum_probs=26.6
Q ss_pred EEEEc--CCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 58 VIHVA--GTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 58 vI~VT--GTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
+|+|. |=.||||||.-|+..|.+.|+||.++
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~Vlli 34 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIV 34 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 46666 56789999999999999999999775
No 93
>PRK11670 antiporter inner membrane protein; Provisional
Probab=81.42 E-value=1.9 Score=45.79 Aligned_cols=33 Identities=30% Similarity=0.404 Sum_probs=29.3
Q ss_pred CcEEEEc---CCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 56 LKVIHVA---GTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 56 l~vI~VT---GTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
.++|+|+ |--|||||+.-|+..|.+.|+||+++
T Consensus 107 ~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLI 142 (369)
T PRK11670 107 KNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGIL 142 (369)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 4689998 66789999999999999999999875
No 94
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=81.14 E-value=4.3 Score=42.20 Aligned_cols=52 Identities=23% Similarity=0.448 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCc-ccCCCCcEEEEc----CCCchhHHHHHHHHHHHhCCCCEEEEe
Q 048728 38 ELLSDYLKILDLD-VAISQLKVIHVA----GTKGKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 38 ~~~~~~L~~Lg~~-~p~~~l~vI~VT----GTnGKTST~~ml~~IL~~~G~k~g~~t 89 (536)
-.++..+-+.|+- .-....+||.|- |-.|||.++.+|...|++.|++++.++
T Consensus 9 ~~lr~~~y~~~~~~~~~~~vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlS 65 (311)
T TIGR00682 9 SNVRRFLYDLGLKKAKRAPVPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLS 65 (311)
T ss_pred HHHHHHHHHcCccccccCCCCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEEC
Confidence 3455555555542 122356788874 889999999999999999999998765
No 95
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=79.86 E-value=2.8 Score=43.92 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=32.2
Q ss_pred cCCCCcEEEEcC--CCchhHHHHHHHHHHHhCCCCEEEEe
Q 048728 52 AISQLKVIHVAG--TKGKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 52 p~~~l~vI~VTG--TnGKTST~~ml~~IL~~~G~k~g~~t 89 (536)
+..+.++|.|+| .-||||++.-|+..|.+.|++|+++.
T Consensus 27 ~~~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid 66 (329)
T cd02033 27 PTKKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIG 66 (329)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 345678888884 77999999999999999999998763
No 96
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=79.68 E-value=3.2 Score=39.03 Aligned_cols=34 Identities=29% Similarity=0.504 Sum_probs=30.9
Q ss_pred EEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 58 VIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 58 vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
-|+|||- .||||.+.-+...|+..||++|=|-+|
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~ 42 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITP 42 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEee
Confidence 5899995 689999999999999999999888888
No 97
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=79.37 E-value=3 Score=38.91 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=30.0
Q ss_pred CcEEEEcC--CCchhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 56 LKVIHVAG--TKGKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 56 l~vI~VTG--TnGKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
+++|+|+| -.||||.+..|...|+..|++++.+-.
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~ 37 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKH 37 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 36899998 568999999999999999999987653
No 98
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=79.26 E-value=16 Score=35.48 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=24.7
Q ss_pred CCCchhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 63 GTKGKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 63 GTnGKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
|-.||||++.-++..+.+.|++|.++..
T Consensus 8 ~g~Gkt~~~~~la~~~a~~g~~~~l~~~ 35 (217)
T cd02035 8 GGVGKTTIAAATAVRLAEEGKKVLLVST 35 (217)
T ss_pred CCchHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 4569999999999999999999988764
No 99
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=79.06 E-value=2.7 Score=45.52 Aligned_cols=37 Identities=19% Similarity=0.321 Sum_probs=32.7
Q ss_pred CcEEEEcC--CCchhHHHHHHHHHHHhCCCCEEEEeCCc
Q 048728 56 LKVIHVAG--TKGKGSTCTFTESILRNCGFRTGLFTSPH 92 (536)
Q Consensus 56 l~vI~VTG--TnGKTST~~ml~~IL~~~G~k~g~~tSph 92 (536)
+++|+|+| -.||||.+.-|-..|+..|++|+++-..|
T Consensus 1 MkVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH~h 39 (452)
T PRK14495 1 MRVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKHSH 39 (452)
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 46899999 67999999999999999999999987654
No 100
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=78.94 E-value=2.8 Score=38.22 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=26.4
Q ss_pred cEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 57 KVIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
|+|+|.|- .||||.+..|-..|...|++++.+-.-
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~ 37 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHT 37 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEc
Confidence 57888885 599999999999999999999965433
No 101
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=78.91 E-value=2.6 Score=42.54 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=26.7
Q ss_pred cEEEEc--CCCchhHHHHHHHHHHHh-CCCCEEEE
Q 048728 57 KVIHVA--GTKGKGSTCTFTESILRN-CGFRTGLF 88 (536)
Q Consensus 57 ~vI~VT--GTnGKTST~~ml~~IL~~-~G~k~g~~ 88 (536)
++|+|+ |=.|||||+.-|+..|.+ .|+||.++
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLli 37 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIH 37 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEe
Confidence 467776 566799999999999997 69999875
No 102
>PRK13236 nitrogenase reductase; Reviewed
Probab=78.67 E-value=3 Score=42.79 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=29.7
Q ss_pred CCCcEEEEc--CCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 54 SQLKVIHVA--GTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 54 ~~l~vI~VT--GTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
..+++|.|- |=.|||||+.-|+..|.+.|+||.++
T Consensus 4 ~~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLli 40 (296)
T PRK13236 4 ENIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIV 40 (296)
T ss_pred cCceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 455777776 46789999999999999999999887
No 103
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=78.20 E-value=2.6 Score=40.23 Aligned_cols=32 Identities=31% Similarity=0.468 Sum_probs=28.2
Q ss_pred EEEEcCC---CchhHHHHHHHHHHHhCCCCEEEEe
Q 048728 58 VIHVAGT---KGKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 58 vI~VTGT---nGKTST~~ml~~IL~~~G~k~g~~t 89 (536)
.|-|||| .|||+++.-|.+.|++.|.+++.|-
T Consensus 2 ~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~~K 36 (199)
T PF13500_consen 2 TIFITGTDTGVGKTVVSLGLARALRRRGIKVGYFK 36 (199)
T ss_dssp EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 5678887 5999999999999999999999764
No 104
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=78.15 E-value=3 Score=40.95 Aligned_cols=31 Identities=23% Similarity=0.278 Sum_probs=26.4
Q ss_pred EEEEc---CCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 58 VIHVA---GTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 58 vI~VT---GTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
+|.|+ |-.||||++.-|+..|.+.|++|.++
T Consensus 2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~Vlli 35 (251)
T TIGR01969 2 IITIASGKGGTGKTTITANLGVALAKLGKKVLAL 35 (251)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 45555 67789999999999999999999875
No 105
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=77.75 E-value=2.7 Score=39.42 Aligned_cols=32 Identities=22% Similarity=0.168 Sum_probs=26.2
Q ss_pred EEEEcCCCchhHHHHHHHHHHHhCCCCEEEEe
Q 048728 58 VIHVAGTKGKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 58 vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~t 89 (536)
+.+.-|=.||||++..|+..|...|++|.++-
T Consensus 3 v~~~kGG~GKTt~a~~la~~la~~g~~VlliD 34 (195)
T PF01656_consen 3 VTSGKGGVGKTTIAANLAQALARKGKKVLLID 34 (195)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEcCCCCccHHHHHHHHHhccccccccccccc
Confidence 44555778999999999999999999998764
No 106
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=77.28 E-value=3.1 Score=42.22 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=29.0
Q ss_pred cEEEEc---CCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 57 KVIHVA---GTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 57 ~vI~VT---GTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
.+|.|+ |-.||+||+..|+..|...|+++|++
T Consensus 48 ~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglL 82 (300)
T KOG3022|consen 48 HIILVLSGKGGVGKSTVTVNLALALASEGKKVGLL 82 (300)
T ss_pred eEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEE
Confidence 478887 88899999999999999999999975
No 107
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=77.25 E-value=4.6 Score=46.86 Aligned_cols=51 Identities=10% Similarity=0.202 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCCcccCCCCcEEEEcCCC---chhHHHHHHHHHHHhCCCCEEEE
Q 048728 38 ELLSDYLKILDLDVAISQLKVIHVAGTK---GKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 38 ~~~~~~L~~Lg~~~p~~~l~vI~VTGTn---GKTST~~ml~~IL~~~G~k~g~~ 88 (536)
|.++.+...|.+..+....++|.||++. ||||++.-|+..|...|+||.++
T Consensus 513 Ea~r~lrt~l~~~~~~~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlI 566 (726)
T PRK09841 513 EAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI 566 (726)
T ss_pred HHHHHHHHHhhhhccCCCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 4455555544433334566899999876 99999999999999999998764
No 108
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=77.08 E-value=7 Score=41.09 Aligned_cols=51 Identities=24% Similarity=0.261 Sum_probs=38.1
Q ss_pred HHHHHHHHcCCc-ccCCCCcEEEE----cCCCchhHHHHHHHHHHHhCCCCEEEEe
Q 048728 39 LLSDYLKILDLD-VAISQLKVIHV----AGTKGKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 39 ~~~~~L~~Lg~~-~p~~~l~vI~V----TGTnGKTST~~ml~~IL~~~G~k~g~~t 89 (536)
.+|+.+-+.|+- ......+||.| .|-.|||-++.+|...|++.|+++++.+
T Consensus 38 ~lR~~~y~~g~~~~~~~pvPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlS 93 (338)
T PRK01906 38 ALRRAAYARGWKKSVRLGVPVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVS 93 (338)
T ss_pred HHHHHHHhhcccccccCCCCEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEe
Confidence 445555455532 12235778887 4899999999999999999999998765
No 109
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=76.88 E-value=6.1 Score=41.28 Aligned_cols=52 Identities=23% Similarity=0.281 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCCcccCCCCcEEEE----cCCCchhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 37 FELLSDYLKILDLDVAISQLKVIHV----AGTKGKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 37 l~~~~~~L~~Lg~~~p~~~l~vI~V----TGTnGKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
+...+..+.+.| ......+||.| .|-+|||-++-.|..-|++.|+++|.++=
T Consensus 30 i~~~r~~~~~~g--~~~~pvPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSR 85 (336)
T COG1663 30 IAGLRRKLAKKG--SYRAPVPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSR 85 (336)
T ss_pred HHHHHHHHhccc--cccCCCCEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEEEec
Confidence 344555555555 22345678876 59999999999999999999999998763
No 110
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=76.86 E-value=3.5 Score=42.03 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=30.5
Q ss_pred CcEEEEcC--CCchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 56 LKVIHVAG--TKGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 56 l~vI~VTG--TnGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
+++|+|+| -.||||.+.-|...|++.| +++++-..
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd 37 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHM 37 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEc
Confidence 46899999 7899999999999999999 89887553
No 111
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=76.84 E-value=1.8 Score=43.40 Aligned_cols=31 Identities=26% Similarity=0.253 Sum_probs=25.7
Q ss_pred cEEEEc--CCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 57 KVIHVA--GTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 57 ~vI~VT--GTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
++|+|. |-.||||||.-|++.|.+.| ||.++
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La~~G-rVLli 35 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVLVI 35 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCCC-EEEEE
Confidence 455555 67789999999999999999 98765
No 112
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=76.81 E-value=21 Score=41.24 Aligned_cols=33 Identities=30% Similarity=0.342 Sum_probs=27.7
Q ss_pred EEEEcCC---CchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 58 VIHVAGT---KGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 58 vI~VTGT---nGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
.|-|+|| .|||++|.-|...|++.|+++|.|- |
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fK-P 39 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFK-P 39 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeC-C
Confidence 3445544 7899999999999999999999987 6
No 113
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=76.44 E-value=3 Score=38.57 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=26.0
Q ss_pred EEEcCCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 59 IHVAGTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 59 I~VTGTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
..-.|-.||||++..|+..|.+.|++|.++
T Consensus 5 ~~~kgG~GKtt~a~~la~~l~~~g~~vllv 34 (179)
T cd02036 5 TSGKGGVGKTTTTANLGTALAQLGYKVVLI 34 (179)
T ss_pred eeCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 344577899999999999999999999876
No 114
>PRK00784 cobyric acid synthase; Provisional
Probab=76.40 E-value=2.7 Score=46.38 Aligned_cols=34 Identities=32% Similarity=0.455 Sum_probs=29.4
Q ss_pred cEEEEcCC---CchhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 57 KVIHVAGT---KGKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 57 ~vI~VTGT---nGKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
+.|-|||| .|||+++..|...|++.|++++.|-.
T Consensus 3 ~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 3 KALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 45788887 79999999999999999999887653
No 115
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=76.32 E-value=3.5 Score=38.30 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=24.1
Q ss_pred cCCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 62 AGTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 62 TGTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
-|--||||++.-|+..|.+.|+||.++
T Consensus 8 kgG~GKTt~a~~LA~~la~~g~~vllv 34 (169)
T cd02037 8 KGGVGKSTVAVNLALALAKLGYKVGLL 34 (169)
T ss_pred CCcCChhHHHHHHHHHHHHcCCcEEEE
Confidence 367799999999999999999999775
No 116
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=76.14 E-value=3.5 Score=40.61 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=27.3
Q ss_pred EEEEcCC---CchhHHHHHHHHHHHhCCCCEEEEe
Q 048728 58 VIHVAGT---KGKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 58 vI~VTGT---nGKTST~~ml~~IL~~~G~k~g~~t 89 (536)
.|-|||| -|||+++..|...|++.|++++.|-
T Consensus 4 ~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~K 38 (231)
T PRK12374 4 RFFITGTDTSVGKTVVSRALLQALASQGKTVAGYK 38 (231)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 3556655 7999999999999999999998874
No 117
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=76.06 E-value=2.5 Score=40.01 Aligned_cols=24 Identities=29% Similarity=0.733 Sum_probs=19.2
Q ss_pred EEEEcCC--CchhHHHHHHHHHHHhCCCCE
Q 048728 58 VIHVAGT--KGKGSTCTFTESILRNCGFRT 85 (536)
Q Consensus 58 vI~VTGT--nGKTST~~ml~~IL~~~G~k~ 85 (536)
.|+|||| .||||+|..|+ ..|+++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~----~lg~~~ 27 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR----ELGYKV 27 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH----HhCCce
Confidence 6999999 57999998877 457765
No 118
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=75.74 E-value=8.2 Score=40.31 Aligned_cols=33 Identities=27% Similarity=0.241 Sum_probs=27.9
Q ss_pred CCcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEE
Q 048728 55 QLKVIHVAGTK--GKGSTCTFTESILRNCGFRTGL 87 (536)
Q Consensus 55 ~l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~ 87 (536)
+..||-+.|.| |||||.+=|++.|.+.|+++-+
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~Vll 172 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLL 172 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEE
Confidence 35677777777 6999999999999999998865
No 119
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=75.66 E-value=3.9 Score=41.45 Aligned_cols=34 Identities=29% Similarity=0.314 Sum_probs=30.1
Q ss_pred CCcEEEEc---CCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 55 QLKVIHVA---GTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 55 ~l~vI~VT---GTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
..++|.|| |--|||||+..|+..|.+.|+||+++
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlli 92 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLL 92 (265)
T ss_pred cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEE
Confidence 56789998 55689999999999999999999875
No 120
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=75.64 E-value=3.2 Score=41.52 Aligned_cols=30 Identities=17% Similarity=0.082 Sum_probs=25.2
Q ss_pred EEEEcCCCchhHHHHHHHHHHHhCCCCEEE
Q 048728 58 VIHVAGTKGKGSTCTFTESILRNCGFRTGL 87 (536)
Q Consensus 58 vI~VTGTnGKTST~~ml~~IL~~~G~k~g~ 87 (536)
++++.|-.||||+++-|+..|...|.+|-.
T Consensus 6 i~s~kGGvG~TTltAnLA~aL~~~G~~Vla 35 (243)
T PF06564_consen 6 IVSPKGGVGKTTLTANLAWALARLGESVLA 35 (243)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 455567778999999999999999998754
No 121
>PRK10818 cell division inhibitor MinD; Provisional
Probab=75.52 E-value=3.8 Score=41.11 Aligned_cols=32 Identities=25% Similarity=0.328 Sum_probs=26.8
Q ss_pred cEEEEc---CCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 57 KVIHVA---GTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 57 ~vI~VT---GTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
++|+|+ |=-||||++..|+..|.+.|++|.++
T Consensus 3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllv 37 (270)
T PRK10818 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVI 37 (270)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 567776 56689999999999999999988664
No 122
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=75.37 E-value=7.4 Score=40.31 Aligned_cols=51 Identities=24% Similarity=0.201 Sum_probs=38.1
Q ss_pred HHHHHHHHHHcCCcccCCCCcEEEEcCC---CchhHHHHHHHHHHHhCCCCEEEE
Q 048728 37 FELLSDYLKILDLDVAISQLKVIHVAGT---KGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 37 l~~~~~~L~~Lg~~~p~~~l~vI~VTGT---nGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
-+.+.+.+.++. ..+....++|+|+|. -||||++.-|+..|...|++|.++
T Consensus 75 ~~~l~~~l~~~~-~~~~~~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLv 128 (322)
T TIGR03815 75 EGWLVELLADLD-QSPPARGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLV 128 (322)
T ss_pred HHHHHHHHHhhc-cCCCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEE
Confidence 345556666664 234456788988865 479999999999999999998764
No 123
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=75.22 E-value=3.8 Score=41.13 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=25.2
Q ss_pred EEEEc---CCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 58 VIHVA---GTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 58 vI~VT---GTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
+|.|+ |-.|||||+.=|+-.|...|+|||++
T Consensus 2 iIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~l 35 (261)
T PF09140_consen 2 IIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLL 35 (261)
T ss_dssp EEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEE
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 56666 67799999999999999999999975
No 124
>CHL00175 minD septum-site determining protein; Validated
Probab=74.98 E-value=3.9 Score=41.35 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=28.5
Q ss_pred CcEEEEcC---CCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 56 LKVIHVAG---TKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 56 l~vI~VTG---TnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
.++|.|++ -.||||++.-|+..|.+.|++|.++
T Consensus 15 ~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlli 50 (281)
T CHL00175 15 SRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALI 50 (281)
T ss_pred ceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 36888885 5589999999999999999999875
No 125
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=74.34 E-value=9.2 Score=40.01 Aligned_cols=54 Identities=22% Similarity=0.306 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCCc-ccCCCCcEEEE----cCCCchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 38 ELLSDYLKILDLD-VAISQLKVIHV----AGTKGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 38 ~~~~~~L~~Lg~~-~p~~~l~vI~V----TGTnGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
-.++..+-+.|+- ......+||.| +|-.|||-++.+|...|++.|+++++.+=.
T Consensus 16 ~~~R~~~y~~g~~~~~~~~vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRG 74 (326)
T PF02606_consen 16 VSLRNFLYDRGLLKSYRLPVPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILSRG 74 (326)
T ss_pred HHHHHHHHhcCCcccCCCCCcEEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEcCC
Confidence 3455666655543 23346788887 489999999999999999999999987654
No 126
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=74.13 E-value=4 Score=40.06 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=20.0
Q ss_pred EEEEcCCC--chhHHHHHHHHHHHh
Q 048728 58 VIHVAGTK--GKGSTCTFTESILRN 80 (536)
Q Consensus 58 vI~VTGTn--GKTST~~ml~~IL~~ 80 (536)
+|+|+|.+ ||||++..|..+|+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 58888865 799999999999985
No 127
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=74.06 E-value=4.1 Score=37.72 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=27.4
Q ss_pred EEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 58 VIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 58 vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
+|+|+|. .||||++..|...|+..|++++.+-.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~ 35 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKH 35 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 4667774 48999999999999999999998764
No 128
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=73.66 E-value=4.4 Score=41.69 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=22.4
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHHhC
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILRNC 81 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~~~ 81 (536)
--+|||+|.+ ||||++.+|..+|+..
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~ 89 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRW 89 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 3599999976 7999999999999853
No 129
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=73.56 E-value=5 Score=39.83 Aligned_cols=33 Identities=33% Similarity=0.366 Sum_probs=27.7
Q ss_pred cEEEEc---CCCchhHHHHHHHHHHHhCCCCEEEEe
Q 048728 57 KVIHVA---GTKGKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 57 ~vI~VT---GTnGKTST~~ml~~IL~~~G~k~g~~t 89 (536)
++|.++ |-.||||++.+|++.|.+.|.+|.++-
T Consensus 2 ~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lID 37 (231)
T PF07015_consen 2 PVITFASSKGGAGKTTAAMALASELAARGARVALID 37 (231)
T ss_pred CeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 456555 667899999999999999999988763
No 130
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=73.55 E-value=4.6 Score=38.20 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=27.0
Q ss_pred EEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 58 VIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 58 vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
+|+|+|. .||||.+..|...|...|.++..+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~ 35 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISL 35 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEeh
Confidence 4788885 68999999999999988887766543
No 131
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=73.38 E-value=3.4 Score=41.41 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=24.1
Q ss_pred cCCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 62 AGTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 62 TGTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
-|=.||||||.-|+..|.+.|+||.++
T Consensus 8 KGGVGKTT~~~nLA~~La~~g~rVLli 34 (268)
T TIGR01281 8 KGGIGKSTTSSNLSVAFAKLGKRVLQI 34 (268)
T ss_pred CCcCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 477899999999999999999998765
No 132
>PRK14974 cell division protein FtsY; Provisional
Probab=73.05 E-value=5.4 Score=41.91 Aligned_cols=35 Identities=26% Similarity=0.300 Sum_probs=29.7
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
..+|.++|.+ |||||++.++..|...|++++++++
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~ 176 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAG 176 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 4688899865 7999999999999999998887654
No 133
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=72.83 E-value=9 Score=40.64 Aligned_cols=56 Identities=25% Similarity=0.268 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHcCCcccCCCCcEEEEcC--CCchhHHHHHHHHHHHhCCCCEEEEeCCc
Q 048728 36 RFELLSDYLKILDLDVAISQLKVIHVAG--TKGKGSTCTFTESILRNCGFRTGLFTSPH 92 (536)
Q Consensus 36 ~l~~~~~~L~~Lg~~~p~~~l~vI~VTG--TnGKTST~~ml~~IL~~~G~k~g~~tSph 92 (536)
.-++.+++.++.. +.+..+.++|+|+| -.||||.+.-+-..|++.|++++.+-..|
T Consensus 186 TpeDl~~l~~~~~-~~~~~~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~ 243 (366)
T PRK14489 186 TPEDLEQLRAIPD-GTTTGAPPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHSH 243 (366)
T ss_pred CHHHHHHHhhhhh-cccCCCccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEECC
Confidence 3445555544332 12344678999999 46899999999999999999999886543
No 134
>PRK06761 hypothetical protein; Provisional
Probab=72.38 E-value=29 Score=35.56 Aligned_cols=58 Identities=21% Similarity=0.292 Sum_probs=38.1
Q ss_pred cEEEEcC--CCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHH
Q 048728 57 KVIHVAG--TKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYF 116 (536)
Q Consensus 57 ~vI~VTG--TnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~ 116 (536)
++|.|+| -.||||++..+..-|...|+++..+.-+-.....|- ..+..++.++|....
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~--~~~~~~~~eer~~~l 63 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADY--DGVACFTKEEFDRLL 63 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhh--ccccCCCHHHHHHHH
Confidence 4688887 468999999999999988988877654321111121 123446666666654
No 135
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=71.65 E-value=5 Score=38.96 Aligned_cols=30 Identities=27% Similarity=0.421 Sum_probs=25.5
Q ss_pred EEcCC---CchhHHHHHHHHHHHhCCCCEEEEe
Q 048728 60 HVAGT---KGKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 60 ~VTGT---nGKTST~~ml~~IL~~~G~k~g~~t 89 (536)
-|||| -|||+++..|.+.|++.|++++.|-
T Consensus 3 ~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 3 FVTGTDTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred EEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 34544 6999999999999999999998765
No 136
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=71.55 E-value=9.3 Score=41.50 Aligned_cols=35 Identities=31% Similarity=0.463 Sum_probs=29.7
Q ss_pred CcEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 56 LKVIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 56 l~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
..+|.++|- .|||||++-|+..|+..|+++++++.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~ 136 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCA 136 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 458888874 58999999999999999999988764
No 137
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=71.30 E-value=5.2 Score=40.69 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=26.8
Q ss_pred EEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEe
Q 048728 58 VIHVAGT--KGKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 58 vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~t 89 (536)
+|+|||. .||||++.-+..+|+..|.++.++.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~ 34 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVE 34 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence 5899996 5899999999999999888776543
No 138
>PRK11519 tyrosine kinase; Provisional
Probab=71.07 E-value=8.7 Score=44.59 Aligned_cols=52 Identities=19% Similarity=0.293 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCcccCCCCcEEEEcC---CCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 37 FELLSDYLKILDLDVAISQLKVIHVAG---TKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 37 l~~~~~~L~~Lg~~~p~~~l~vI~VTG---TnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
.|.++.+...|.+..+....++|.||+ --||||++.-|+..|...|.||.++
T Consensus 507 ~Ea~r~lrt~l~~~~~~~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlI 561 (719)
T PRK11519 507 IEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLI 561 (719)
T ss_pred HHHHHHHHHHhhhhccCCCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 355555555554433445668999998 4599999999999999999999775
No 139
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=69.51 E-value=4.7 Score=41.31 Aligned_cols=30 Identities=23% Similarity=0.189 Sum_probs=25.4
Q ss_pred EEEc--CCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 59 IHVA--GTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 59 I~VT--GTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
|+|+ |-.|||||+.-|+..|.+.|+||-++
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~~G~rVLlI 34 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALARRGKKVLQI 34 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 4444 67899999999999999999998764
No 140
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=68.55 E-value=19 Score=37.48 Aligned_cols=40 Identities=28% Similarity=0.376 Sum_probs=35.0
Q ss_pred cCCCCcEEEEcCCC---chhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 52 AISQLKVIHVAGTK---GKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 52 p~~~l~vI~VTGTn---GKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
+..+.++|.|-||. ||=||+..|...+++.|+++++..|-
T Consensus 144 ~k~~a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaTg 186 (339)
T COG3367 144 RKVDAKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVATG 186 (339)
T ss_pred cccCCcEEEEeccccccchhHHHHHHHHHHHHhCCccceEecC
Confidence 44557799999994 99999999999999999999988765
No 141
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=68.20 E-value=7.6 Score=32.65 Aligned_cols=31 Identities=29% Similarity=0.269 Sum_probs=26.6
Q ss_pred EEEEcCCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 58 VIHVAGTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 58 vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
+++--|--||||++..++..|.+.|.++.++
T Consensus 4 ~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~ 34 (104)
T cd02042 4 VANQKGGVGKTTTAVNLAAALARRGKRVLLI 34 (104)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHhCCCcEEEE
Confidence 4555678899999999999999999988776
No 142
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=67.88 E-value=7.8 Score=36.76 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=30.3
Q ss_pred CCcEEEEcC--CCchhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 55 QLKVIHVAG--TKGKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 55 ~l~vI~VTG--TnGKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
..++|+|+| -.||||...-|-..|+..|+++|.+-.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~ 42 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEE
Confidence 457999999 458999989999999999999988764
No 143
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=66.83 E-value=8.6 Score=39.29 Aligned_cols=44 Identities=20% Similarity=0.269 Sum_probs=30.9
Q ss_pred HHHHHHHcCCcc--cCCCCcEEEEcCCCchhHHHHHHHHHHHhCCCC
Q 048728 40 LSDYLKILDLDV--AISQLKVIHVAGTKGKGSTCTFTESILRNCGFR 84 (536)
Q Consensus 40 ~~~~L~~Lg~~~--p~~~l~vI~VTGTnGKTST~~ml~~IL~~~G~k 84 (536)
+.+...++|+.. |...+-+.|=+|| |||+++..+...|...|+.
T Consensus 43 ~~~~r~~~g~~~~~~~~~vll~G~pGT-GKT~lA~~ia~~l~~~g~~ 88 (284)
T TIGR02880 43 VERLRQRLGLASAAPTLHMSFTGNPGT-GKTTVALRMAQILHRLGYV 88 (284)
T ss_pred HHHHHHHhCCCcCCCCceEEEEcCCCC-CHHHHHHHHHHHHHHcCCc
Confidence 344455566532 3334446788899 9999999999999987763
No 144
>PRK06696 uridine kinase; Validated
Probab=66.62 E-value=8.9 Score=37.47 Aligned_cols=33 Identities=12% Similarity=0.085 Sum_probs=27.4
Q ss_pred CCcEEEEcC--CCchhHHHHHHHHHHHhCCCCEEE
Q 048728 55 QLKVIHVAG--TKGKGSTCTFTESILRNCGFRTGL 87 (536)
Q Consensus 55 ~l~vI~VTG--TnGKTST~~ml~~IL~~~G~k~g~ 87 (536)
+..+|+|+| -.||||.+..|...|.+.|.++..
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~ 55 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIR 55 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 446999998 579999999999999988865543
No 145
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=65.83 E-value=5.7 Score=43.74 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=24.6
Q ss_pred CchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 65 KGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 65 nGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
.|||.+|+.|..+|++.|++++.|-.-
T Consensus 10 vGKT~v~~~L~~~l~~~G~~v~~fKp~ 36 (475)
T TIGR00313 10 AGKSTLTAGLCRILARRGYRVAPFKSQ 36 (475)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 799999999999999999999977653
No 146
>PLN02796 D-glycerate 3-kinase
Probab=65.38 E-value=11 Score=39.67 Aligned_cols=31 Identities=19% Similarity=0.226 Sum_probs=26.1
Q ss_pred cEEEEcCCC--chhHHHHHHHHHHHhCCCCEEE
Q 048728 57 KVIHVAGTK--GKGSTCTFTESILRNCGFRTGL 87 (536)
Q Consensus 57 ~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~ 87 (536)
-+|+|+|.+ ||||++..|..+|...|++++.
T Consensus 101 liIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~ 133 (347)
T PLN02796 101 LVIGISAPQGCGKTTLVFALVYLFNATGRRAAS 133 (347)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHhcccCCceeE
Confidence 479999964 7999999999999887776664
No 147
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=65.34 E-value=14 Score=40.39 Aligned_cols=36 Identities=22% Similarity=0.403 Sum_probs=29.3
Q ss_pred CcEEEEcC--CCchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 56 LKVIHVAG--TKGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 56 l~vI~VTG--TnGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
..+|.++| -.|||||++-|+..|.+.|++++++...
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 45677776 3589999999999999999999887654
No 148
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=65.27 E-value=11 Score=43.87 Aligned_cols=51 Identities=16% Similarity=0.151 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCcccCCCCcEEEEcC---CCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 38 ELLSDYLKILDLDVAISQLKVIHVAG---TKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 38 ~~~~~~L~~Lg~~~p~~~l~vI~VTG---TnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
+.++.+...|.+..+....++|.||+ --|||||+.-|+..|...|+||.++
T Consensus 528 Ea~r~lr~~l~~~~~~~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlI 581 (754)
T TIGR01005 528 EELRVKEEAVAEAKSVAEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLI 581 (754)
T ss_pred HHHHHHHHHHhhhccCCCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEE
Confidence 34444443333223334567899985 4689999999999999999988664
No 149
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=65.21 E-value=11 Score=35.35 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=28.6
Q ss_pred EEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 58 VIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 58 vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
+|.|.|. .||||.+..|+..|...|+++.....|
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~ 37 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREP 37 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 5777774 589999999999999999998766666
No 150
>COG4240 Predicted kinase [General function prediction only]
Probab=64.24 E-value=16 Score=36.32 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=28.5
Q ss_pred CCCcEEEEcCC--CchhHHHHHHHHHHHhCC-CCEEEE
Q 048728 54 SQLKVIHVAGT--KGKGSTCTFTESILRNCG-FRTGLF 88 (536)
Q Consensus 54 ~~l~vI~VTGT--nGKTST~~ml~~IL~~~G-~k~g~~ 88 (536)
.+--+++|.|. .||||++..|..+|.+.| ++++.+
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~l 85 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATL 85 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEe
Confidence 34458999996 689999999999999988 677653
No 151
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=64.24 E-value=7.6 Score=34.87 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=24.6
Q ss_pred EcCC-CchhHHHHHHHHHHHhCCCCEEEEe
Q 048728 61 VAGT-KGKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 61 VTGT-nGKTST~~ml~~IL~~~G~k~g~~t 89 (536)
|||+ .|||+++.-+...|++.|++++.|-
T Consensus 5 ~~~~~~Gkt~~~~~l~~~l~~~~~~v~~~k 34 (134)
T cd03109 5 GTGTDIGKTVATAILARALKEKGYRVAPLK 34 (134)
T ss_pred eCCCCcCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4443 6999999999999999999998874
No 152
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=64.02 E-value=11 Score=39.02 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=27.4
Q ss_pred cEEEEc--CCCchhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 57 KVIHVA--GTKGKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 57 ~vI~VT--GTnGKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
++|-++ |-.||||+++.++--+...|++|-+.++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~ 37 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVST 37 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEES
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeec
Confidence 344444 7899999999999999999999988765
No 153
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=63.14 E-value=6.4 Score=36.59 Aligned_cols=27 Identities=22% Similarity=0.156 Sum_probs=21.3
Q ss_pred cCCCCcEEEEcCC--CchhHHHHHHHHHH
Q 048728 52 AISQLKVIHVAGT--KGKGSTCTFTESIL 78 (536)
Q Consensus 52 p~~~l~vI~VTGT--nGKTST~~ml~~IL 78 (536)
|.+..+-|-|||| .||||+|..|+..+
T Consensus 3 ~~r~~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 3 PERERPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred hhhcCCCEEEeCCCCCCchhHHHHHHHHh
Confidence 3455678999999 57999999999655
No 154
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=61.96 E-value=19 Score=35.36 Aligned_cols=31 Identities=26% Similarity=0.469 Sum_probs=25.3
Q ss_pred CCCcEEEEcCCC--chhHHHHHHHHHHHhCCCC
Q 048728 54 SQLKVIHVAGTK--GKGSTCTFTESILRNCGFR 84 (536)
Q Consensus 54 ~~l~vI~VTGTn--GKTST~~ml~~IL~~~G~k 84 (536)
.+-.+|+|+|-+ ||||.+..|..+|+..+-.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~ 63 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGEL 63 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence 345699999976 6999999999999986544
No 155
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=61.90 E-value=21 Score=39.44 Aligned_cols=34 Identities=24% Similarity=0.236 Sum_probs=25.8
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHH-hCC-CCEEEEe
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILR-NCG-FRTGLFT 89 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~-~~G-~k~g~~t 89 (536)
-.+|++.|-| |||||+..|+..+. ..| .++++++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~ 293 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLT 293 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 3588888876 69999999999884 455 4777654
No 156
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=60.98 E-value=10 Score=41.34 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=24.8
Q ss_pred cCC-CchhHHHHHHHHHHHhCCCCEEEEe
Q 048728 62 AGT-KGKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 62 TGT-nGKTST~~ml~~IL~~~G~k~g~~t 89 (536)
|+| .|||+++.-|...|++.|++++.|-
T Consensus 7 T~t~vGKT~vt~~L~~~L~~~G~~V~~fK 35 (449)
T TIGR00379 7 TSSGVGKTTISTGIMKALSRRKLRVQPFK 35 (449)
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCceeEEc
Confidence 444 7999999999999999999998885
No 157
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=60.93 E-value=9.1 Score=37.67 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=23.9
Q ss_pred CCCcEEEEcC--CCchhHHHHHHHHHHHhC
Q 048728 54 SQLKVIHVAG--TKGKGSTCTFTESILRNC 81 (536)
Q Consensus 54 ~~l~vI~VTG--TnGKTST~~ml~~IL~~~ 81 (536)
.+.-+|||+| ..||||.|..|...|...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 5557999998 679999999999999854
No 158
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=60.66 E-value=19 Score=38.87 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=28.4
Q ss_pred cEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 57 KVIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
++|++.|- .|||||.+-|+.-|...|+++++++.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~a 277 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 277 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEec
Confidence 56777764 58999999999999999999998765
No 159
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=60.62 E-value=7.2 Score=41.76 Aligned_cols=45 Identities=18% Similarity=0.342 Sum_probs=30.5
Q ss_pred CCcEEEEcCCCc--hhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHH
Q 048728 55 QLKVIHVAGTKG--KGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLA 114 (536)
Q Consensus 55 ~l~vI~VTGTnG--KTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~ 114 (536)
+--++-++|.|| |||.|.++.-+.+-. |. +|+.||.|++.+...+
T Consensus 348 rGelvFliG~NGsGKST~~~LLtGL~~Pq--------sG-------~I~ldg~pV~~e~led 394 (546)
T COG4615 348 RGELVFLIGGNGSGKSTLAMLLTGLYQPQ--------SG-------EILLDGKPVSAEQLED 394 (546)
T ss_pred cCcEEEEECCCCCcHHHHHHHHhcccCCC--------CC-------ceeECCccCCCCCHHH
Confidence 344788999885 777777665554321 12 7999999998765443
No 160
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=60.49 E-value=12 Score=42.36 Aligned_cols=38 Identities=16% Similarity=0.251 Sum_probs=33.4
Q ss_pred CCcEEEEcC--CCchhHHHHHHHHHHHhCCCCEEEEeCCc
Q 048728 55 QLKVIHVAG--TKGKGSTCTFTESILRNCGFRTGLFTSPH 92 (536)
Q Consensus 55 ~l~vI~VTG--TnGKTST~~ml~~IL~~~G~k~g~~tSph 92 (536)
.+++|+|.| -.||||.+.-|-..|++.|+|++.+-..|
T Consensus 9 ~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh~~ 48 (597)
T PRK14491 9 SIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKHAH 48 (597)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEcCC
Confidence 468999999 67999999999999999999999987654
No 161
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=60.21 E-value=17 Score=39.43 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=34.5
Q ss_pred CcEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHH
Q 048728 56 LKVIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDK 111 (536)
Q Consensus 56 l~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~ 111 (536)
--+|+|+|- .||||.+..|..+|+..|++++. |.+||..++.++
T Consensus 212 PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgv------------ISiDDfYLt~ee 257 (460)
T PLN03046 212 PLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSAT------------LSIDDFYLTAEG 257 (460)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcccCCceEE------------EEECCccCChHH
Confidence 358999996 47999999999999888887764 456777766554
No 162
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=59.60 E-value=13 Score=33.48 Aligned_cols=33 Identities=27% Similarity=0.191 Sum_probs=25.8
Q ss_pred cEEEEcC---CCchhHHHHHHHHHHHhCCCCEEEEe
Q 048728 57 KVIHVAG---TKGKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 57 ~vI~VTG---TnGKTST~~ml~~IL~~~G~k~g~~t 89 (536)
|+|+|.| --||||++.-++..|.+.|.+|.++-
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid 36 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLID 36 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 3566665 66999999999999999998876543
No 163
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=59.48 E-value=13 Score=32.69 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=24.3
Q ss_pred CCCchhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 63 GTKGKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 63 GTnGKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
|..||||++..+...|.+.|+++.++..
T Consensus 8 gG~GKTt~a~~la~~l~~~g~~V~~id~ 35 (116)
T cd02034 8 GGVGKTTIAALLARYLAEKGKPVLAIDA 35 (116)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 6789999999999999999998876543
No 164
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=58.67 E-value=8.9 Score=42.25 Aligned_cols=96 Identities=21% Similarity=0.158 Sum_probs=57.8
Q ss_pred CCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCC
Q 048728 55 QLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMP 134 (536)
Q Consensus 55 ~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p 134 (536)
..++|.|+|||||++|.++....+...++++...|.- ||..-
T Consensus 63 ~~~vi~V~~~~~~~~~~a~~~y~~ps~~l~vigvTGT-----------NgKTt--------------------------- 104 (475)
T COG0769 63 GVPVIVVTGTNGKLTTLALAFYGLPSGKLKVIGVTGT-----------NGKTT--------------------------- 104 (475)
T ss_pred CCCEEEEcCcHHHHHHHHHHhccCcccCceEEEEcCC-----------CcHHH---------------------------
Confidence 3568999999999999999999887754555433311 22100
Q ss_pred CHHHHHHHHHHHHHhhCCCcEEEEec-cc-CCcccccccccCCcEEEEcCCCchhHhhhC
Q 048728 135 SYFRFLALLAFKIFTAEQIDVAILEV-GL-GGRFDATNVVQKPVVCGISSLGYDHMEILG 192 (536)
Q Consensus 135 ~~fe~lt~la~~~f~~~~~d~aVlEv-g~-gg~~D~tn~i~~P~vaVITnI~~DHld~lG 192 (536)
.-.+....+. ....++.++..|. +. .|..+.+... .|+...++|+..|++|..+
T Consensus 105 --~t~~~~~~~~-~~g~~~~~~gT~g~~~~~~~~~~~~~t-TP~~~~l~~~~~~~~d~~~ 160 (475)
T COG0769 105 --TTSLLAQILK-KLGKKTALIGTEGDELSPGILEPTGLT-TPEALDLQNLLRDLLDRGA 160 (475)
T ss_pred --HHHHHHHHHH-hcCCceEEEEEEeeeccCCcccccCCC-CccHHHHHHHHHHHHHcCC
Confidence 0000111111 1234466666665 22 3555533333 7888889999999988877
No 165
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=58.66 E-value=11 Score=37.39 Aligned_cols=31 Identities=26% Similarity=0.250 Sum_probs=24.6
Q ss_pred EEEEcCCCchhHHHHHHHHHHH-hCCCCEEEE
Q 048728 58 VIHVAGTKGKGSTCTFTESILR-NCGFRTGLF 88 (536)
Q Consensus 58 vI~VTGTnGKTST~~ml~~IL~-~~G~k~g~~ 88 (536)
+...-|=.|||||+..|+..|. ..|+||-++
T Consensus 7 v~n~KGGvGKTT~a~nLa~~La~~~~~kVLli 38 (259)
T COG1192 7 VANQKGGVGKTTTAVNLAAALAKRGGKKVLLI 38 (259)
T ss_pred EEecCCCccHHHHHHHHHHHHHHhcCCcEEEE
Confidence 3444588899999999999999 556888663
No 166
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=58.19 E-value=80 Score=33.01 Aligned_cols=104 Identities=21% Similarity=0.275 Sum_probs=58.6
Q ss_pred cEEEEc--CCCchhHHHHHHHHHHHhCCCCEEEEeCCc---cccccce--------e--eeCCeecCHH-HHHHHHHHHH
Q 048728 57 KVIHVA--GTKGKGSTCTFTESILRNCGFRTGLFTSPH---LIDVRER--------F--RLDGDDISED-KFLAYFWWCY 120 (536)
Q Consensus 57 ~vI~VT--GTnGKTST~~ml~~IL~~~G~k~g~~tSph---l~~~~Er--------i--~inG~~is~~-~f~~~~~~v~ 120 (536)
++|-++ |-.||||+++-++-.|.+.|.||-+.++-. |.+.-.. | .+++..++.. .+.+++.++.
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~~elg~~~~~I~~nL~a~eiD~~~~l~ey~~~v~ 82 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDLELGHDPRKVGPNLDALELDPEKALEEYWDEVK 82 (322)
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhhccccCCchhhcCCCCceeeecHHHHHHHHHHHHH
Confidence 455555 678999999999999999998887765422 2211111 1 1122334433 3445554555
Q ss_pred HhhhhhhcCC----------CCCCCHHHHHHHHHHHHHh-hCCCcEEEEec
Q 048728 121 DRLKEKATED----------IPMPSYFRFLALLAFKIFT-AEQIDVAILEV 160 (536)
Q Consensus 121 ~~l~~~~~~~----------~~~p~~fe~lt~la~~~f~-~~~~d~aVlEv 160 (536)
+.+....... ...|-.-|++.+.++.-+. ....|++|+-+
T Consensus 83 ~~~~~~~~~~~l~~~~~~e~~~~PGidE~~~l~~i~e~~~~~~yD~IV~Dt 133 (322)
T COG0003 83 DYLARLLRTRGLGGIYADELATLPGIDEALALLKILEYYVSGEYDVIVVDT 133 (322)
T ss_pred HHHHhhccccccchhHHHHHhhCCCHHHHHHHHHHHHHHhccCCCEEEEcC
Confidence 4444322111 1246666666555555443 44578888876
No 167
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=57.23 E-value=55 Score=32.69 Aligned_cols=28 Identities=25% Similarity=0.258 Sum_probs=24.7
Q ss_pred CCCchhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 63 GTKGKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 63 GTnGKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
|--||||+++-++..+.+.|+||-++..
T Consensus 9 gG~GKtt~a~~la~~~a~~g~~vLlvd~ 36 (254)
T cd00550 9 GGVGKTTISAATAVRLAEQGKKVLLVST 36 (254)
T ss_pred CCchHHHHHHHHHHHHHHCCCCceEEeC
Confidence 5679999999999999999999987754
No 168
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=57.09 E-value=15 Score=36.74 Aligned_cols=30 Identities=20% Similarity=0.403 Sum_probs=24.5
Q ss_pred EEEEc--CCCchhHHHHH-HHHHHHhCCCCEEE
Q 048728 58 VIHVA--GTKGKGSTCTF-TESILRNCGFRTGL 87 (536)
Q Consensus 58 vI~VT--GTnGKTST~~m-l~~IL~~~G~k~g~ 87 (536)
.|+|| |-.||||.+++ +..+++..|+++-.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLv 34 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLV 34 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEE
Confidence 58888 57899999999 88888887787643
No 169
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=57.06 E-value=13 Score=34.25 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=23.2
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 64 TKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 64 TnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
--|||+++.-|...|++.|+|++++
T Consensus 8 ~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 8 GVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CccHHHHHHHHHHHHHHCCCcEEEE
Confidence 3699999999999999999999986
No 170
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=57.02 E-value=12 Score=36.64 Aligned_cols=36 Identities=22% Similarity=0.351 Sum_probs=31.5
Q ss_pred cEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeCCc
Q 048728 57 KVIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTSPH 92 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tSph 92 (536)
..|.|-|- .||||.+.+|...|++.|+++.+..-|.
T Consensus 4 ~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~ 41 (208)
T COG0125 4 MFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPG 41 (208)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 47888884 6899999999999999999998888884
No 171
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=56.76 E-value=14 Score=31.61 Aligned_cols=29 Identities=21% Similarity=0.132 Sum_probs=24.8
Q ss_pred EEcCCCchhHHHHHHHHHHHhC-CCCEEEE
Q 048728 60 HVAGTKGKGSTCTFTESILRNC-GFRTGLF 88 (536)
Q Consensus 60 ~VTGTnGKTST~~ml~~IL~~~-G~k~g~~ 88 (536)
+--|.-||||++.-|+..|.+. |+++.++
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~ 35 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLV 35 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEE
Confidence 3346678999999999999998 9999876
No 172
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=56.21 E-value=19 Score=33.97 Aligned_cols=35 Identities=20% Similarity=0.424 Sum_probs=28.5
Q ss_pred cEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 57 KVIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
.+|.|.|. .||||.+.+|+.-|...|+++....-|
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~ 40 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREP 40 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 47889885 599999999999999999887554333
No 173
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=56.18 E-value=19 Score=33.39 Aligned_cols=34 Identities=26% Similarity=0.286 Sum_probs=27.0
Q ss_pred EEEEcC--CCchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 58 VIHVAG--TKGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 58 vI~VTG--TnGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
++.++| -.||||++..+...|.+.|.++.++...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 456665 4589999999999999999988776644
No 174
>PLN02924 thymidylate kinase
Probab=56.09 E-value=21 Score=35.11 Aligned_cols=41 Identities=27% Similarity=0.421 Sum_probs=32.4
Q ss_pred ccCCCCcEEEEcC--CCchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 51 VAISQLKVIHVAG--TKGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 51 ~p~~~l~vI~VTG--TnGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
.|...-.+|.|.| -.||||-+.+|..-|+..|+++-.+.-|
T Consensus 11 ~~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep 53 (220)
T PLN02924 11 SVESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFP 53 (220)
T ss_pred CcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCC
Confidence 3445557899999 4689999999999999999987544334
No 175
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=55.38 E-value=29 Score=37.26 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=24.3
Q ss_pred cEEEEcCC--CchhHHHHHHHHHHHh----CCCCEEEEeC
Q 048728 57 KVIHVAGT--KGKGSTCTFTESILRN----CGFRTGLFTS 90 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~IL~~----~G~k~g~~tS 90 (536)
.+|.+.|. .|||||++-+++.|.. .|.++++++.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~ 214 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITI 214 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEec
Confidence 35555543 3899999999998873 4778877654
No 176
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=55.29 E-value=17 Score=37.61 Aligned_cols=37 Identities=27% Similarity=0.353 Sum_probs=30.4
Q ss_pred CCcEEEEcCC---CchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 55 QLKVIHVAGT---KGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 55 ~l~vI~VTGT---nGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
+-++|+|-|| -||=||+.+|...|++.|+++++..|-
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTG 150 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATG 150 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-S
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecC
Confidence 4578999987 599999999999999999999998775
No 177
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=55.01 E-value=24 Score=38.26 Aligned_cols=35 Identities=20% Similarity=0.163 Sum_probs=27.2
Q ss_pred cEEEEcCC--CchhHHHHHHHHHHH--hCCCCEEEEeCC
Q 048728 57 KVIHVAGT--KGKGSTCTFTESILR--NCGFRTGLFTSP 91 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~IL~--~~G~k~g~~tSp 91 (536)
.+|.+.|- .|||||+..|+..+. ..|+++++++.-
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D 260 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLD 260 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 47777765 479999999998886 567889887653
No 178
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=54.99 E-value=15 Score=34.90 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=22.0
Q ss_pred EEEEcC--CCchhHHHHHHHHHHHhCCCCEEEEe
Q 048728 58 VIHVAG--TKGKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 58 vI~VTG--TnGKTST~~ml~~IL~~~G~k~g~~t 89 (536)
+|+|+| ..||||++.+|..+| .+.++.++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~ 32 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIIS 32 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEE
Confidence 478887 468999999999999 234454443
No 179
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=54.86 E-value=7.9 Score=37.37 Aligned_cols=31 Identities=29% Similarity=0.434 Sum_probs=22.2
Q ss_pred CCCcEEEEcCCCchhHHHH--HHHHHHHhCCCC
Q 048728 54 SQLKVIHVAGTKGKGSTCT--FTESILRNCGFR 84 (536)
Q Consensus 54 ~~l~vI~VTGTnGKTST~~--ml~~IL~~~G~k 84 (536)
.+.++|+|||+.|-|||+. ....|++....+
T Consensus 3 aKhPiIavTGSSGAGTTTts~aFrKiF~~~~I~ 35 (289)
T COG3954 3 AKHPVIAVTGSSGAGTTTTSLAFRKIFAQLNIH 35 (289)
T ss_pred CCCceEEEecCCCCCcccHHHHHHHHHHhcCcc
Confidence 4678999999998776654 455677765543
No 180
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=54.67 E-value=12 Score=40.42 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=28.8
Q ss_pred cEEEEcC--CCchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 57 KVIHVAG--TKGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 57 ~vI~VTG--TnGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
.+|-..| -.||||||+=|+.-|+..|+|+++...-
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD 137 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAAD 137 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecc
Confidence 4565555 3699999999999999999999887653
No 181
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=54.67 E-value=28 Score=35.45 Aligned_cols=37 Identities=27% Similarity=0.231 Sum_probs=28.5
Q ss_pred CCcEEEEcCC--CchhHHHHHHHHHHHhC-C-CCEEEEeCC
Q 048728 55 QLKVIHVAGT--KGKGSTCTFTESILRNC-G-FRTGLFTSP 91 (536)
Q Consensus 55 ~l~vI~VTGT--nGKTST~~ml~~IL~~~-G-~k~g~~tSp 91 (536)
+-.+|.+.|- .|||||+..|..-+... | +++++++.-
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D 233 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD 233 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 3457888874 47999999999988764 5 889887754
No 182
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=52.90 E-value=17 Score=36.87 Aligned_cols=32 Identities=31% Similarity=0.548 Sum_probs=26.0
Q ss_pred cEEEEcC----CCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 57 KVIHVAG----TKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 57 ~vI~VTG----TnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
+.|-||| +=|||-|++-+..+|+..|+++...
T Consensus 2 KyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~ 37 (276)
T PF06418_consen 2 KYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMI 37 (276)
T ss_dssp EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEE
T ss_pred cEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeee
Confidence 5688887 6799999999999999999998653
No 183
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=52.04 E-value=35 Score=37.03 Aligned_cols=37 Identities=24% Similarity=0.227 Sum_probs=24.8
Q ss_pred CCcEEEEcCCC--chhHHHHHHHHHH--HhCCCCEEEEeCC
Q 048728 55 QLKVIHVAGTK--GKGSTCTFTESIL--RNCGFRTGLFTSP 91 (536)
Q Consensus 55 ~l~vI~VTGTn--GKTST~~ml~~IL--~~~G~k~g~~tSp 91 (536)
+-.+|++.|-| |||||.+.|+..+ ...+.++++++..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d 230 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTD 230 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 34678888876 6999999898654 2333566665544
No 184
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=51.92 E-value=28 Score=32.66 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=27.1
Q ss_pred CcEEEEcC--CCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 56 LKVIHVAG--TKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 56 l~vI~VTG--TnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
-.+|.++| -.||||.+..|...|...|..+.++
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l 52 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVL 52 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 35899999 8899999999999998877655443
No 185
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=50.18 E-value=23 Score=38.01 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=30.6
Q ss_pred CCcEEEEcC--CCchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 55 QLKVIHVAG--TKGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 55 ~l~vI~VTG--TnGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
+-++|.++| -.|||||++-|+..+...|+++++++.-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaD 243 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTD 243 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 346888888 5689999999999998889999887753
No 186
>PRK12377 putative replication protein; Provisional
Probab=50.18 E-value=18 Score=36.34 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=26.5
Q ss_pred cEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 57 KVIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
..+.+.|. .|||..+..+...|...|+++.+++.+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~ 138 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP 138 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH
Confidence 34555553 499999999999998889888666655
No 187
>PRK10867 signal recognition particle protein; Provisional
Probab=48.53 E-value=26 Score=38.21 Aligned_cols=35 Identities=23% Similarity=0.209 Sum_probs=28.7
Q ss_pred CcEEEEcCC--CchhHHHHHHHHHHHhC-CCCEEEEeC
Q 048728 56 LKVIHVAGT--KGKGSTCTFTESILRNC-GFRTGLFTS 90 (536)
Q Consensus 56 l~vI~VTGT--nGKTST~~ml~~IL~~~-G~k~g~~tS 90 (536)
..+|.++|- .|||||++-++..|... |+++.++..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~ 137 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAA 137 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEc
Confidence 457778874 58999999999999888 999987654
No 188
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=48.46 E-value=27 Score=27.32 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=23.0
Q ss_pred EEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 58 VIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 58 vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
+|.|+|. .||||.+..+...| .|.++..+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i~~ 33 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL--GGRSVVVLDE 33 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence 3667774 58999999999999 5666665544
No 189
>PRK07933 thymidylate kinase; Validated
Probab=48.19 E-value=29 Score=33.82 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=28.7
Q ss_pred EEEEcC--CCchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 58 VIHVAG--TKGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 58 vI~VTG--TnGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
+|.|-| -.||||.+.+|..-|+..|+++.+..-|
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P 37 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFP 37 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 567777 3689999999999999999998876666
No 190
>PRK00698 tmk thymidylate kinase; Validated
Probab=48.14 E-value=30 Score=32.72 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=27.7
Q ss_pred cEEEEcC--CCchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 57 KVIHVAG--TKGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 57 ~vI~VTG--TnGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
++|.|.| -.||||.+..|+.-|...|+.+....-|
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~~p 40 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTREP 40 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEeeCC
Confidence 5788888 4799999999999999888765544444
No 191
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=48.06 E-value=22 Score=41.90 Aligned_cols=35 Identities=11% Similarity=-0.063 Sum_probs=31.1
Q ss_pred CCCcEEEEcCCC---chhHHHHHHHHHHHhCCCCEEEE
Q 048728 54 SQLKVIHVAGTK---GKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 54 ~~l~vI~VTGTn---GKTST~~ml~~IL~~~G~k~g~~ 88 (536)
..++.+-||||| |||-+++.|.+.|+..|.+++.+
T Consensus 25 ~~~~~~fI~GtnT~VGKT~vS~~L~~~~~~~g~~~~y~ 62 (817)
T PLN02974 25 LSCPAFAVWGANTAVGKTLVSAGLAAAAASRRSPVLYV 62 (817)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEE
Confidence 457899999998 99999999999999999887654
No 192
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=47.01 E-value=18 Score=38.58 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=25.7
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHH-hCC-CCEEEEeCC
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILR-NCG-FRTGLFTSP 91 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~-~~G-~k~g~~tSp 91 (536)
-.+|.+.|.+ |||||.+.|..-+. ..| .++++++.-
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D 176 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTD 176 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecc
Confidence 3577777755 79999999998654 456 577777654
No 193
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=46.91 E-value=17 Score=31.13 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=19.6
Q ss_pred EEEEcCC--CchhHHHHHHHHHHHhCCCCE
Q 048728 58 VIHVAGT--KGKGSTCTFTESILRNCGFRT 85 (536)
Q Consensus 58 vI~VTGT--nGKTST~~ml~~IL~~~G~k~ 85 (536)
+|.|+|. .||||++..|+.-| |+++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~---~~~~ 27 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL---GFPV 27 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---TCEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---CCeE
Confidence 5777774 58999999999987 5554
No 194
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=45.76 E-value=46 Score=36.25 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=26.9
Q ss_pred cEEEEcCC--CchhHHHHHHHHHHH-hCCCCEEEEeC
Q 048728 57 KVIHVAGT--KGKGSTCTFTESILR-NCGFRTGLFTS 90 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~IL~-~~G~k~g~~tS 90 (536)
.+|.++|. .|||||++-|+..|. +.|+++.++..
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~ 136 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVAC 136 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 46666663 689999999999987 57999987654
No 195
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=45.30 E-value=40 Score=35.68 Aligned_cols=31 Identities=26% Similarity=0.333 Sum_probs=24.4
Q ss_pred CCcEEEEcCCC-chhHHHHHHHHHHHhCCCCE
Q 048728 55 QLKVIHVAGTK-GKGSTCTFTESILRNCGFRT 85 (536)
Q Consensus 55 ~l~vI~VTGTn-GKTST~~ml~~IL~~~G~k~ 85 (536)
.-+++-|-+|+ ||||.|.||-+-.-..|++.
T Consensus 103 GPrv~vVGp~d~GKsTl~r~L~nyavk~gr~P 134 (415)
T KOG2749|consen 103 GPRVMVVGPTDVGKSTLCRILLNYAVKQGRRP 134 (415)
T ss_pred CCEEEEECCCccchHHHHHHHHHHHHHcCCcc
Confidence 34567777787 99999999988777778765
No 196
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=45.17 E-value=39 Score=37.41 Aligned_cols=34 Identities=24% Similarity=0.154 Sum_probs=29.1
Q ss_pred CCcEEEEcC------CCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 55 QLKVIHVAG------TKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 55 ~l~vI~VTG------TnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
.-++|.||. --|||||+.=|+..|.+.|.|+.+.
T Consensus 37 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gkk~l~~ 76 (524)
T cd00477 37 DGKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAIAC 76 (524)
T ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEE
Confidence 457899999 3489999999999999999987653
No 197
>PRK00889 adenylylsulfate kinase; Provisional
Probab=44.24 E-value=41 Score=31.20 Aligned_cols=32 Identities=19% Similarity=0.361 Sum_probs=25.9
Q ss_pred cEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEE
Q 048728 57 KVIHVAGT--KGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
.+|.|+|. .||||++..|+..|...|.++.++
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~i 38 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLREAGYPVEVL 38 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 58888884 689999999999998877665443
No 198
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=43.69 E-value=31 Score=37.86 Aligned_cols=31 Identities=32% Similarity=0.529 Sum_probs=27.3
Q ss_pred cEEEEcC----CCchhHHHHHHHHHHHhCCCCEEE
Q 048728 57 KVIHVAG----TKGKGSTCTFTESILRNCGFRTGL 87 (536)
Q Consensus 57 ~vI~VTG----TnGKTST~~ml~~IL~~~G~k~g~ 87 (536)
+.|-||| +=|||-|++-|..+|++.|+++..
T Consensus 2 KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~ 36 (533)
T COG0504 2 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTI 36 (533)
T ss_pred eEEEEeCCeecccccHHHHHHHHHHHHHCCceEEE
Confidence 4677887 789999999999999999998854
No 199
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=43.63 E-value=14 Score=37.34 Aligned_cols=38 Identities=29% Similarity=0.488 Sum_probs=28.2
Q ss_pred EEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHH
Q 048728 58 VIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISED 110 (536)
Q Consensus 58 vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~ 110 (536)
++.+-|+ .|||||-.|+..+++. +|. .|.|||+++++.
T Consensus 29 f~vliGpSGsGKTTtLkMINrLiep--------t~G-------~I~i~g~~i~~~ 68 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINRLIEP--------TSG-------EILIDGEDISDL 68 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC--------CCc-------eEEECCeecccC
Confidence 3444444 5899999999999974 222 699999999864
No 200
>PRK03846 adenylylsulfate kinase; Provisional
Probab=43.22 E-value=43 Score=31.93 Aligned_cols=32 Identities=28% Similarity=0.305 Sum_probs=26.0
Q ss_pred CcEEEEcC--CCchhHHHHHHHHHHHhCCCCEEE
Q 048728 56 LKVIHVAG--TKGKGSTCTFTESILRNCGFRTGL 87 (536)
Q Consensus 56 l~vI~VTG--TnGKTST~~ml~~IL~~~G~k~g~ 87 (536)
-.+|.|+| -.||||.+..|...|...|..+.+
T Consensus 24 ~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ 57 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEEALHELGVSTYL 57 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 35899999 778999999999999877765543
No 201
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=42.96 E-value=20 Score=35.62 Aligned_cols=28 Identities=29% Similarity=0.323 Sum_probs=20.8
Q ss_pred EEEcCCCchhHHHHHHHHHHHhCCCCEEE
Q 048728 59 IHVAGTKGKGSTCTFTESILRNCGFRTGL 87 (536)
Q Consensus 59 I~VTGTnGKTST~~ml~~IL~~~G~k~g~ 87 (536)
||=+| .||||-|.-+...+...|.++.+
T Consensus 2 iGpaG-SGKTT~~~~~~~~~~~~~~~~~~ 29 (238)
T PF03029_consen 2 IGPAG-SGKTTFCKGLSEWLESNGRDVYI 29 (238)
T ss_dssp EESTT-SSHHHHHHHHHHHHTTT-S-EEE
T ss_pred CCCCC-CCHHHHHHHHHHHHHhccCCceE
Confidence 44445 49999999999999999887654
No 202
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=42.88 E-value=20 Score=34.14 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=18.2
Q ss_pred EEEEcCC--CchhHHHHHHHHHHHhCCCCE
Q 048728 58 VIHVAGT--KGKGSTCTFTESILRNCGFRT 85 (536)
Q Consensus 58 vI~VTGT--nGKTST~~ml~~IL~~~G~k~ 85 (536)
+|||||. .||||++.++.. .|+++
T Consensus 2 iIglTG~igsGKStv~~~l~~----~G~~v 27 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE----LGFPV 27 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH----TT-EE
T ss_pred EEEEECCCcCCHHHHHHHHHH----CCCCE
Confidence 6999995 789999888765 67655
No 203
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=42.47 E-value=37 Score=34.09 Aligned_cols=30 Identities=30% Similarity=0.466 Sum_probs=26.0
Q ss_pred EEEEcC----CCchhHHHHHHHHHHHhCCCCEEE
Q 048728 58 VIHVAG----TKGKGSTCTFTESILRNCGFRTGL 87 (536)
Q Consensus 58 vI~VTG----TnGKTST~~ml~~IL~~~G~k~g~ 87 (536)
.|-||| +=|||-|++-+..+|++.|+++..
T Consensus 2 yi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~ 35 (255)
T cd03113 2 YIFVTGGVVSSLGKGITAASLGRLLKARGLKVTA 35 (255)
T ss_pred EEEEeCCcccCcchHHHHHHHHHHHHHCCCeEEE
Confidence 567777 569999999999999999999854
No 204
>PRK13973 thymidylate kinase; Provisional
Probab=42.02 E-value=29 Score=33.60 Aligned_cols=35 Identities=23% Similarity=0.417 Sum_probs=29.3
Q ss_pred cEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 57 KVIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
+.|.|-|. .||||.+.+|+.-|+..|+++....-|
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p 40 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREP 40 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 46777774 589999999999999999998776666
No 205
>PRK06835 DNA replication protein DnaC; Validated
Probab=41.84 E-value=37 Score=35.54 Aligned_cols=37 Identities=22% Similarity=0.089 Sum_probs=26.4
Q ss_pred CCCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 54 SQLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 54 ~~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
..+-+.|=+|| |||..+..++.-|...|++|..++.+
T Consensus 184 ~~Lll~G~~Gt-GKThLa~aIa~~l~~~g~~V~y~t~~ 220 (329)
T PRK06835 184 ENLLFYGNTGT-GKTFLSNCIAKELLDRGKSVIYRTAD 220 (329)
T ss_pred CcEEEECCCCC-cHHHHHHHHHHHHHHCCCeEEEEEHH
Confidence 33444555555 99999988888887889887666655
No 206
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=40.93 E-value=37 Score=40.19 Aligned_cols=29 Identities=31% Similarity=0.421 Sum_probs=25.1
Q ss_pred EEEEcCCCchhHHHHHHHHHHHhCCCCEEE
Q 048728 58 VIHVAGTKGKGSTCTFTESILRNCGFRTGL 87 (536)
Q Consensus 58 vI~VTGTnGKTST~~ml~~IL~~~G~k~g~ 87 (536)
+.|.=|| |||||-..|-.+|-..|.++-+
T Consensus 690 I~GMPGT-GKTTtI~~LIkiL~~~gkkVLL 718 (1100)
T KOG1805|consen 690 ILGMPGT-GKTTTISLLIKILVALGKKVLL 718 (1100)
T ss_pred eecCCCC-CchhhHHHHHHHHHHcCCeEEE
Confidence 6677777 9999999999999999988754
No 207
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=40.79 E-value=1.3e+02 Score=27.61 Aligned_cols=51 Identities=22% Similarity=0.243 Sum_probs=31.5
Q ss_pred hCCCcEEEEecccCC---cc--cccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHccc
Q 048728 150 AEQIDVAILEVGLGG---RF--DATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIF 206 (536)
Q Consensus 150 ~~~~d~aVlEvg~gg---~~--D~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~ 206 (536)
..++|++++=...-. .+ .-.+.+.+|.++|||-+..+. +-+++.++|.-+-
T Consensus 61 a~dad~V~ll~dat~~~~~~pP~fa~~f~~pvIGVITK~Dl~~------~~~~i~~a~~~L~ 116 (143)
T PF10662_consen 61 AQDADVVLLLQDATEPRSVFPPGFASMFNKPVIGVITKIDLPS------DDANIERAKKWLK 116 (143)
T ss_pred HhhCCEEEEEecCCCCCccCCchhhcccCCCEEEEEECccCcc------chhhHHHHHHHHH
Confidence 357888888776521 11 123445689999999998773 4455555554443
No 208
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=40.72 E-value=22 Score=35.91 Aligned_cols=40 Identities=20% Similarity=0.366 Sum_probs=31.7
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHHh-CCCCEEEEeCCccccccceeeeCCeecCHHH
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILRN-CGFRTGLFTSPHLIDVRERFRLDGDDISEDK 111 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~~-~G~k~g~~tSphl~~~~Eri~inG~~is~~~ 111 (536)
-.+.|.-|-| |||||-+||-.+|.. .| +|.++|.+++...
T Consensus 28 G~i~GllG~NGAGKTTtfRmILglle~~~G----------------~I~~~g~~~~~~~ 70 (300)
T COG4152 28 GEIFGLLGPNGAGKTTTFRMILGLLEPTEG----------------EITWNGGPLSQEI 70 (300)
T ss_pred CeEEEeecCCCCCccchHHHHhccCCccCc----------------eEEEcCcchhhhh
Confidence 3578888877 699999999999975 23 5888999988764
No 209
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=40.60 E-value=47 Score=30.92 Aligned_cols=34 Identities=26% Similarity=0.283 Sum_probs=27.7
Q ss_pred cEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 57 KVIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
.+|-+||. .||||.+..|+.-|.+.|+++.++-+
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg 38 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDG 38 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC
Confidence 37888885 58999999999999999998876544
No 210
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=40.46 E-value=36 Score=34.87 Aligned_cols=48 Identities=23% Similarity=0.420 Sum_probs=36.2
Q ss_pred HHHHHHHcCCcccCCCCcEEEEcCC---CchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 40 LSDYLKILDLDVAISQLKVIHVAGT---KGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 40 ~~~~L~~Lg~~~p~~~l~vI~VTGT---nGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
.++=++.+|. +.+-+|-|||= .==+-=.++|..+|+++|||||.+.-|
T Consensus 5 t~~em~~rGW----d~lDvilVtGDAYVDHPsFG~AiIgR~Le~~GyrVgIiaQP 55 (302)
T PF08497_consen 5 TREEMKARGW----DELDVILVTGDAYVDHPSFGAAIIGRVLEAHGYRVGIIAQP 55 (302)
T ss_pred CHHHHHHcCC----ccccEEEEeCcccccCcchhHHHHHHHHHHcCCeEEEEeCC
Confidence 3455667785 46679999992 122223789999999999999999999
No 211
>PRK05480 uridine/cytidine kinase; Provisional
Probab=40.26 E-value=44 Score=32.01 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=20.6
Q ss_pred CCcEEEEcCC--CchhHHHHHHHHHH
Q 048728 55 QLKVIHVAGT--KGKGSTCTFTESIL 78 (536)
Q Consensus 55 ~l~vI~VTGT--nGKTST~~ml~~IL 78 (536)
+-.+|+|+|- .||||.+..|...|
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4468999985 59999999999988
No 212
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=39.84 E-value=30 Score=33.60 Aligned_cols=32 Identities=19% Similarity=0.394 Sum_probs=20.1
Q ss_pred CCcEEEEcCCCchhHHHHHHH-HHHHhCCCCEEE
Q 048728 55 QLKVIHVAGTKGKGSTCTFTE-SILRNCGFRTGL 87 (536)
Q Consensus 55 ~l~vI~VTGTnGKTST~~ml~-~IL~~~G~k~g~ 87 (536)
++-|+|-||| |||+|++.|- .+++..|.++.+
T Consensus 25 H~~I~G~TGs-GKS~~~~~ll~~l~~~~~~~~ii 57 (229)
T PF01935_consen 25 HIAIFGTTGS-GKSNTVKVLLEELLKKKGAKVII 57 (229)
T ss_pred eEEEECCCCC-CHHHHHHHHHHHHHhcCCCCEEE
Confidence 3447777776 8987776554 455366665543
No 213
>PRK13768 GTPase; Provisional
Probab=39.59 E-value=42 Score=33.62 Aligned_cols=31 Identities=16% Similarity=0.347 Sum_probs=25.1
Q ss_pred EEEEcC--CCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 58 VIHVAG--TKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 58 vI~VTG--TnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
+|.|+| -.||||++.-+...|...|.++.++
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i 36 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIV 36 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEE
Confidence 455554 5789999999999999999888664
No 214
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=38.78 E-value=69 Score=37.49 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=26.3
Q ss_pred cEEEEcCCC--chhHHHHHHHHHHH-hCC-CCEEEEeCC
Q 048728 57 KVIHVAGTK--GKGSTCTFTESILR-NCG-FRTGLFTSP 91 (536)
Q Consensus 57 ~vI~VTGTn--GKTST~~ml~~IL~-~~G-~k~g~~tSp 91 (536)
.+|++.|-| |||||...|+..+. ..| .++++.+.-
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D 224 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD 224 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc
Confidence 477777765 69999999998884 566 477776643
No 215
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=38.28 E-value=25 Score=32.17 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=14.4
Q ss_pred EEEcCC--CchhHHHHHHHHH
Q 048728 59 IHVAGT--KGKGSTCTFTESI 77 (536)
Q Consensus 59 I~VTGT--nGKTST~~ml~~I 77 (536)
|+|+|+ .||||++.-|+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 788885 6899999888866
No 216
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=37.58 E-value=30 Score=33.51 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=29.1
Q ss_pred cEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCH
Q 048728 57 KVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISE 109 (536)
Q Consensus 57 ~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~ 109 (536)
..+.|+|-| ||||.-++|+-+++...- +|+++|.+++.
T Consensus 29 e~~~i~G~NG~GKTtLLRilaGLl~p~~G---------------~v~~~~~~i~~ 68 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAGLLRPDAG---------------EVYWQGEPIQN 68 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHcccCCCCC---------------eEEecCCCCcc
Confidence 478999988 599999999999986432 56677777654
No 217
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=37.22 E-value=28 Score=33.80 Aligned_cols=26 Identities=23% Similarity=0.486 Sum_probs=20.3
Q ss_pred CcEEEEcCC--CchhHHHHHHHHHHHhCCCCE
Q 048728 56 LKVIHVAGT--KGKGSTCTFTESILRNCGFRT 85 (536)
Q Consensus 56 l~vI~VTGT--nGKTST~~ml~~IL~~~G~k~ 85 (536)
+.+|+|||. .||||++.+++. .|+++
T Consensus 2 ~~iIglTG~igsGKStva~~~~~----~G~~v 29 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE----LGFPV 29 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH----cCCeE
Confidence 458999994 799999987766 46655
No 218
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=36.93 E-value=46 Score=37.11 Aligned_cols=31 Identities=32% Similarity=0.536 Sum_probs=27.5
Q ss_pred cEEEEcC----CCchhHHHHHHHHHHHhCCCCEEE
Q 048728 57 KVIHVAG----TKGKGSTCTFTESILRNCGFRTGL 87 (536)
Q Consensus 57 ~vI~VTG----TnGKTST~~ml~~IL~~~G~k~g~ 87 (536)
+.|-||| +=|||.|++-|..+|++.|+++..
T Consensus 2 k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~ 36 (525)
T TIGR00337 2 KYIFVTGGVVSSLGKGITAASIGRLLKARGLKVTI 36 (525)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEE
Confidence 5788888 579999999999999999999854
No 219
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=36.89 E-value=52 Score=36.78 Aligned_cols=42 Identities=24% Similarity=0.163 Sum_probs=29.7
Q ss_pred HHHHcCCcccCCCCcEEEEcCCC------chhHHHHHHHHHHHhCCCCEEE
Q 048728 43 YLKILDLDVAISQLKVIHVAGTK------GKGSTCTFTESILRNCGFRTGL 87 (536)
Q Consensus 43 ~L~~Lg~~~p~~~l~vI~VTGTn------GKTST~~ml~~IL~~~G~k~g~ 87 (536)
+|+++. ...+-+.|-||+.+ |||||+-=|...|.+.|+++..
T Consensus 44 ~~~~~~---~~~~gklilVTaitPTp~GEGKtTttiGL~~al~~lg~~~~~ 91 (557)
T PF01268_consen 44 VLERLK---DKPDGKLILVTAITPTPAGEGKTTTTIGLAQALNRLGKKAIA 91 (557)
T ss_dssp HHHHTT---TS---EEEEEEESS--TTS-SHHHHHHHHHHHHHHTT--EEE
T ss_pred HHhhcc---ccCCCcEEEEEecCCCCCCCCceeHHHHHHHHHHhcCCceEE
Confidence 455553 23456789999976 9999999999999999998743
No 220
>PTZ00301 uridine kinase; Provisional
Probab=36.27 E-value=61 Score=31.62 Aligned_cols=27 Identities=41% Similarity=0.553 Sum_probs=20.7
Q ss_pred CcEEEEcC--CCchhHHHHHHHHHH-HhCC
Q 048728 56 LKVIHVAG--TKGKGSTCTFTESIL-RNCG 82 (536)
Q Consensus 56 l~vI~VTG--TnGKTST~~ml~~IL-~~~G 82 (536)
..+|+|+| ..||||.+..|..-| +..|
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~ 32 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCG 32 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcC
Confidence 36899998 579999998887655 4344
No 221
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=36.17 E-value=21 Score=33.45 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=20.4
Q ss_pred CchhHHHHHHHHHHHhCCCCEEE
Q 048728 65 KGKGSTCTFTESILRNCGFRTGL 87 (536)
Q Consensus 65 nGKTST~~ml~~IL~~~G~k~g~ 87 (536)
.||||.+.+|..-|+..|+++.+
T Consensus 7 sGKtT~~~~L~~~l~~~~~~~~~ 29 (186)
T PF02223_consen 7 SGKTTQIRLLAEALKEKGYKVII 29 (186)
T ss_dssp SSHHHHHHHHHHHHHHTTEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCcccc
Confidence 59999999999999999998443
No 222
>CHL00181 cbbX CbbX; Provisional
Probab=35.98 E-value=54 Score=33.55 Aligned_cols=41 Identities=27% Similarity=0.302 Sum_probs=26.3
Q ss_pred HHHHHcCCcccCCCCc--EEEEcCCCchhHHHHHHHHHHHhCCC
Q 048728 42 DYLKILDLDVAISQLK--VIHVAGTKGKGSTCTFTESILRNCGF 83 (536)
Q Consensus 42 ~~L~~Lg~~~p~~~l~--vI~VTGTnGKTST~~ml~~IL~~~G~ 83 (536)
+..+.+|+..|...++ ++|=+|| |||+++..++.++...|+
T Consensus 46 ~~~~~~g~~~~~~~~~ill~G~pGt-GKT~lAr~la~~~~~~g~ 88 (287)
T CHL00181 46 RLRKNLGLTSSNPGLHMSFTGSPGT-GKTTVALKMADILYKLGY 88 (287)
T ss_pred HHHHHcCCCCCCCCceEEEECCCCC-CHHHHHHHHHHHHHHcCC
Confidence 3344566543333332 2344454 999999999999987775
No 223
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=35.96 E-value=42 Score=33.60 Aligned_cols=27 Identities=15% Similarity=0.068 Sum_probs=24.0
Q ss_pred cCCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 62 AGTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 62 TGTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
-|-.|||+++..++..|...|.++.++
T Consensus 11 KGGvGKSt~a~~la~~l~~~g~~vl~i 37 (241)
T PRK13886 11 KGGVGKSFIAATIAQYKASKGQKPLCI 37 (241)
T ss_pred CCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence 478899999999999999999988765
No 224
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=35.21 E-value=49 Score=29.63 Aligned_cols=31 Identities=26% Similarity=0.189 Sum_probs=25.7
Q ss_pred EEEEcCCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 58 VIHVAGTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 58 vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
+....|--||||++..++.-|...|.++.++
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~v 34 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLL 34 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 3445678899999999999999999888664
No 225
>COG5623 CLP1 Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
Probab=35.15 E-value=77 Score=32.97 Aligned_cols=48 Identities=21% Similarity=0.105 Sum_probs=31.9
Q ss_pred HHHHHHHHHHcCCcccCCCCcEEEEcC--CCchhHHHHHHHHHHHhCCCCE
Q 048728 37 FELLSDYLKILDLDVAISQLKVIHVAG--TKGKGSTCTFTESILRNCGFRT 85 (536)
Q Consensus 37 l~~~~~~L~~Lg~~~p~~~l~vI~VTG--TnGKTST~~ml~~IL~~~G~k~ 85 (536)
+=++.-+|+.++..+.. +.|.+.|-| .|||||.|..|.+-.-+.|++.
T Consensus 81 i~Nlhf~lek~rm~n~e-~gp~v~vvGgsq~Gkts~~~tL~syalk~~~~p 130 (424)
T COG5623 81 IFNLHFFLEKRRMFNYE-KGPTVMVVGGSQNGKTSFCFTLISYALKLGKKP 130 (424)
T ss_pred hhhHHHHHHhhcccccc-cCCEEEEECCCcCCceeHHHHHHHHHHHhcCCc
Confidence 33555666666533333 455565555 6999999998888776668765
No 226
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=34.63 E-value=55 Score=33.17 Aligned_cols=29 Identities=31% Similarity=0.319 Sum_probs=21.8
Q ss_pred cEEEEc---CCCchhHHHHHHHHHHHhCCCCE
Q 048728 57 KVIHVA---GTKGKGSTCTFTESILRNCGFRT 85 (536)
Q Consensus 57 ~vI~VT---GTnGKTST~~ml~~IL~~~G~k~ 85 (536)
++|+|+ |--||||+++-+..++-+.+.++
T Consensus 3 ~~Iav~SgKGGvGKTtitanlga~~~~~~~k~ 34 (262)
T COG0455 3 KVIAVVSGKGGVGKTTITANLGAALAALGGKV 34 (262)
T ss_pred EEEEEEecCCCccHHHHHHhHHHHHHhhCCCe
Confidence 578887 78899999999955555555444
No 227
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=34.62 E-value=34 Score=34.28 Aligned_cols=28 Identities=32% Similarity=0.299 Sum_probs=18.7
Q ss_pred CCCcEEEEcCCCchhHHH-HHHHHHHHhCC
Q 048728 54 SQLKVIHVAGTKGKGSTC-TFTESILRNCG 82 (536)
Q Consensus 54 ~~l~vI~VTGTnGKTST~-~ml~~IL~~~G 82 (536)
..+.|.|.+|| |||||. .-+..+|...+
T Consensus 14 ~~~lV~a~AGS-GKT~~l~~ri~~ll~~~~ 42 (315)
T PF00580_consen 14 GPLLVNAGAGS-GKTTTLLERIAYLLYEGG 42 (315)
T ss_dssp SEEEEEE-TTS-SHHHHHHHHHHHHHHTSS
T ss_pred CCEEEEeCCCC-CchHHHHHHHHHhhcccc
Confidence 45678899887 999976 34556666554
No 228
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=34.11 E-value=33 Score=35.16 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=29.9
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCH
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISE 109 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~ 109 (536)
=.++++-|-| ||||+-.+|..+++.. +. +|.++|.++..
T Consensus 31 Gei~gllG~NGAGKTTllk~l~gl~~p~--------~G-------~i~i~G~~~~~ 71 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAGLLKPT--------SG-------EILVLGYDVVK 71 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCcCCC--------ce-------EEEEcCEeCcc
Confidence 3589999999 5999999999888752 22 57788877654
No 229
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=33.60 E-value=29 Score=33.26 Aligned_cols=21 Identities=24% Similarity=0.570 Sum_probs=17.9
Q ss_pred EEEEcC--CCchhHHHHHHHHHH
Q 048728 58 VIHVAG--TKGKGSTCTFTESIL 78 (536)
Q Consensus 58 vI~VTG--TnGKTST~~ml~~IL 78 (536)
+|+|+| ..||||.|..|...|
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 588888 468999999998887
No 230
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.56 E-value=42 Score=37.45 Aligned_cols=38 Identities=24% Similarity=0.445 Sum_probs=28.7
Q ss_pred CcEEEEcCCCc--hhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCH
Q 048728 56 LKVIHVAGTKG--KGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISE 109 (536)
Q Consensus 56 l~vI~VTGTnG--KTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~ 109 (536)
-.-|+|.|+|| |+|...+|-..+...| +|+|||..+.+
T Consensus 378 GekVaIvG~nGsGKSTilr~LlrF~d~sG----------------~I~IdG~dik~ 417 (591)
T KOG0057|consen 378 GEKVAIVGSNGSGKSTILRLLLRFFDYSG----------------SILIDGQDIKE 417 (591)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccCC----------------cEEECCeeHhh
Confidence 34689999885 7777777777776544 69999998765
No 231
>PRK05380 pyrG CTP synthetase; Validated
Probab=33.51 E-value=55 Score=36.56 Aligned_cols=32 Identities=31% Similarity=0.499 Sum_probs=28.3
Q ss_pred CcEEEEcC----CCchhHHHHHHHHHHHhCCCCEEE
Q 048728 56 LKVIHVAG----TKGKGSTCTFTESILRNCGFRTGL 87 (536)
Q Consensus 56 l~vI~VTG----TnGKTST~~ml~~IL~~~G~k~g~ 87 (536)
.+.|-||| +=|||.|++-|..+|++.|+++..
T Consensus 2 ~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~ 37 (533)
T PRK05380 2 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTI 37 (533)
T ss_pred ceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEE
Confidence 46788888 679999999999999999999854
No 232
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=33.46 E-value=2.2e+02 Score=30.32 Aligned_cols=44 Identities=20% Similarity=0.247 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHcCCc-ccCCCCcEEEEcCCCchhHHHHHHHHHHHhC
Q 048728 36 RFELLSDYLKILDLD-VAISQLKVIHVAGTKGKGSTCTFTESILRNC 81 (536)
Q Consensus 36 ~l~~~~~~L~~Lg~~-~p~~~l~vI~VTGTnGKTST~~ml~~IL~~~ 81 (536)
.++.+..+|.-.=.+ .|.. +-+.|-+|| |||.|+.++..-|+..
T Consensus 25 ei~~l~~~l~~~~~~~~p~n-~~iyG~~GT-GKT~~~~~v~~~l~~~ 69 (366)
T COG1474 25 EINQLASFLAPALRGERPSN-IIIYGPTGT-GKTATVKFVMEELEES 69 (366)
T ss_pred HHHHHHHHHHHHhcCCCCcc-EEEECCCCC-CHhHHHHHHHHHHHhh
Confidence 455555554433222 3443 445566666 9999999999999875
No 233
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=33.29 E-value=44 Score=39.74 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHcCCc-ccCCCCcEEEEcCCCchhHHHHHHHHHHHh
Q 048728 36 RFELLSDYLKILDLD-VAISQLKVIHVAGTKGKGSTCTFTESILRN 80 (536)
Q Consensus 36 ~l~~~~~~L~~Lg~~-~p~~~l~vI~VTGTnGKTST~~ml~~IL~~ 80 (536)
.+..+..+|...-.+ .|..-+-+.|.+|| |||.|+..+..-|+.
T Consensus 763 EIeeLasfL~paIkgsgpnnvLYIyG~PGT-GKTATVK~VLrELqe 807 (1164)
T PTZ00112 763 EIKEVHGFLESGIKQSGSNQILYISGMPGT-GKTATVYSVIQLLQH 807 (1164)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEECCCCC-CHHHHHHHHHHHHHH
Confidence 455666666543212 22222346788887 999999999888864
No 234
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=33.20 E-value=60 Score=36.36 Aligned_cols=31 Identities=23% Similarity=0.167 Sum_probs=27.5
Q ss_pred CCcEEEEcC------CCchhHHHHHHHHHHHhCCCCE
Q 048728 55 QLKVIHVAG------TKGKGSTCTFTESILRNCGFRT 85 (536)
Q Consensus 55 ~l~vI~VTG------TnGKTST~~ml~~IL~~~G~k~ 85 (536)
.-++|.||. --|||||+.=|+..|.+.|.++
T Consensus 53 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gk~~ 89 (578)
T PRK13506 53 KGKLVLVTAITPTPLGEGKTVTTIGLTQGLNALGQKV 89 (578)
T ss_pred CCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHhCCce
Confidence 457999999 3489999999999999999986
No 235
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=33.15 E-value=78 Score=35.49 Aligned_cols=34 Identities=24% Similarity=0.213 Sum_probs=29.7
Q ss_pred CCcEEEEcC------CCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 55 QLKVIHVAG------TKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 55 ~l~vI~VTG------TnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
..++|.||. .-|||||+.=|+..|.+.|.|+.+.
T Consensus 54 ~~k~IlVTS~~PTp~GEGKTt~sinLA~~la~~Gkkvlli 93 (557)
T PRK13505 54 DGKLILVTAINPTPAGEGKSTVTVGLGDALNKIGKKTVIA 93 (557)
T ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 467999998 3489999999999999999998765
No 236
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=32.90 E-value=1.7e+02 Score=24.38 Aligned_cols=24 Identities=13% Similarity=0.050 Sum_probs=16.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHH
Q 048728 325 VFYLDGAHSPESMEICARWFSLAI 348 (536)
Q Consensus 325 ~vilD~AHnp~si~~~l~~~~~~~ 348 (536)
.+-++|-=+++.++..+..+.+.+
T Consensus 4 ~v~~~g~~t~ed~~~~~~~~~~~~ 27 (109)
T PF11964_consen 4 AVRVSGKLTEEDYKELLPALEELI 27 (109)
T ss_dssp EEEEEEEE-HHHHHHHHHHHHHHH
T ss_pred EEEEeeeeCHHHHHHHHHHHHHHH
Confidence 456677778999999888555543
No 237
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=32.89 E-value=1.2e+02 Score=28.78 Aligned_cols=52 Identities=25% Similarity=0.265 Sum_probs=32.7
Q ss_pred HHHHHHHHHHcCCc--ccCCCCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCcccc
Q 048728 37 FELLSDYLKILDLD--VAISQLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLID 95 (536)
Q Consensus 37 l~~~~~~L~~Lg~~--~p~~~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~ 95 (536)
..-+.+.|+.+.-. .+..++..|.+ +||..+..+++..|-|+|++++....+
T Consensus 36 ~~gi~~al~~l~~~~~~~~~~i~~v~~-------gTT~~tNAl~e~~g~~v~li~~~G~~d 89 (176)
T PF05378_consen 36 AEGILEALDALLEESGIDPSDIDRVRH-------GTTVATNALLERKGARVGLITTGGFGD 89 (176)
T ss_pred HHHHHHHHHhhhcccCCChhhCcEEEe-------ccHHHHHHHHhccCCCceEEeccCcHh
Confidence 34455555555311 12334444444 357889999999999999998875433
No 238
>PRK08233 hypothetical protein; Provisional
Probab=32.67 E-value=37 Score=31.28 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=19.4
Q ss_pred cEEEEcCC--CchhHHHHHHHHHHH
Q 048728 57 KVIHVAGT--KGKGSTCTFTESILR 79 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~IL~ 79 (536)
.+|+|+|. .||||.+..|...|.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 68999986 579999999998874
No 239
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.27 E-value=34 Score=31.97 Aligned_cols=39 Identities=15% Similarity=0.316 Sum_probs=26.6
Q ss_pred CCcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecC
Q 048728 55 QLKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDIS 108 (536)
Q Consensus 55 ~l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is 108 (536)
+-.+++|.|-| ||||...+|..++... .-+|.++|.++.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---------------~G~i~~~g~~~~ 65 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEEPD---------------SGSILIDGEDLT 65 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------ceEEEECCEEcc
Confidence 34589999997 7888877777655421 115778887664
No 240
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=32.21 E-value=38 Score=36.44 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=32.0
Q ss_pred CcEEEEcCC--CchhHHHHHHHHHHH--hCCCCEEEEeCCccccccceeeeCC
Q 048728 56 LKVIHVAGT--KGKGSTCTFTESILR--NCGFRTGLFTSPHLIDVRERFRLDG 104 (536)
Q Consensus 56 l~vI~VTGT--nGKTST~~ml~~IL~--~~G~k~g~~tSphl~~~~Eri~inG 104 (536)
-++|..-|. .|||||.+=|++.+. .--+++|++|+- .+||+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtD-------tYRIGA 248 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTD-------TYRIGA 248 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEec-------cchhhH
Confidence 456766664 589999999999988 445789999886 566654
No 241
>PLN02327 CTP synthase
Probab=32.01 E-value=59 Score=36.48 Aligned_cols=31 Identities=35% Similarity=0.605 Sum_probs=27.4
Q ss_pred cEEEEcC----CCchhHHHHHHHHHHHhCCCCEEE
Q 048728 57 KVIHVAG----TKGKGSTCTFTESILRNCGFRTGL 87 (536)
Q Consensus 57 ~vI~VTG----TnGKTST~~ml~~IL~~~G~k~g~ 87 (536)
+.|-||| +=|||.|++-|..+|++.|+++..
T Consensus 2 k~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~ 36 (557)
T PLN02327 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTS 36 (557)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHHCCCceee
Confidence 5788888 579999999999999999998854
No 242
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=31.96 E-value=60 Score=32.97 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=24.8
Q ss_pred CcEEEEcC--CCchhHHHHHHHHHHHhCCCCEEEEe
Q 048728 56 LKVIHVAG--TKGKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 56 l~vI~VTG--TnGKTST~~ml~~IL~~~G~k~g~~t 89 (536)
++.|-|+| ..||||.+.-|...|+..++++.++.
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~ 36 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIIS 36 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEc
Confidence 35788888 79999999999999999887765543
No 243
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=31.49 E-value=34 Score=32.17 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=17.1
Q ss_pred cEEEEcCCCchhHHHHHHHHHHH
Q 048728 57 KVIHVAGTKGKGSTCTFTESILR 79 (536)
Q Consensus 57 ~vI~VTGTnGKTST~~ml~~IL~ 79 (536)
-++||+|+ ||||...+|.+-|.
T Consensus 16 ~vmGvsGs-GKSTigk~L~~~l~ 37 (191)
T KOG3354|consen 16 VVMGVSGS-GKSTIGKALSEELG 37 (191)
T ss_pred EEEecCCC-ChhhHHHHHHHHhC
Confidence 35566664 89999999999885
No 244
>PRK01254 hypothetical protein; Provisional
Probab=31.49 E-value=45 Score=38.21 Aligned_cols=55 Identities=18% Similarity=0.312 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHcCCcccCCCCcEEEEcCCC---chhHHHHHHHHHHHhCCCCEEEEeCCccc
Q 048728 36 RFELLSDYLKILDLDVAISQLKVIHVAGTK---GKGSTCTFTESILRNCGFRTGLFTSPHLI 94 (536)
Q Consensus 36 ~l~~~~~~L~~Lg~~~p~~~l~vI~VTGTn---GKTST~~ml~~IL~~~G~k~g~~tSphl~ 94 (536)
=|+-.++=++.+|+ +.+-+|-|||=. ==+-=.++|..+|.++|||||.+.-|...
T Consensus 24 fLP~t~~em~~~Gw----d~~DiilVtGDAYVDHPsFG~AiigR~Le~~G~rVgIiaQPdw~ 81 (707)
T PRK01254 24 FLPMSREEMDQLGW----DSCDIIIVTGDAYVDHPSFGMAIIGRMLEAQGFRVGIIAQPDWS 81 (707)
T ss_pred cCCCCHHHHHHcCC----CccCEEEEeCcccccCccchHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 46677788888996 467799999921 12223789999999999999999999543
No 245
>PRK13695 putative NTPase; Provisional
Probab=31.42 E-value=67 Score=29.75 Aligned_cols=28 Identities=25% Similarity=0.533 Sum_probs=21.7
Q ss_pred EEEcCCC--chhHHHHHHHHHHHhCCCCEE
Q 048728 59 IHVAGTK--GKGSTCTFTESILRNCGFRTG 86 (536)
Q Consensus 59 I~VTGTn--GKTST~~ml~~IL~~~G~k~g 86 (536)
|+|||.+ ||||...++..-|+..|++++
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l~~~G~~~~ 32 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELLKEEGYKVG 32 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 6778765 799999988888887787643
No 246
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=31.05 E-value=50 Score=39.81 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=23.5
Q ss_pred EEEEcCCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 58 VIHVAGTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 58 vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
+.|-+|| ||||+...+..++++.|+++..+
T Consensus 367 v~G~AGT-GKTT~l~~~~~~~e~~G~~V~~~ 396 (988)
T PRK13889 367 VVGYAGT-GKSAMLGVAREAWEAAGYEVRGA 396 (988)
T ss_pred EEeCCCC-CHHHHHHHHHHHHHHcCCeEEEe
Confidence 4445555 89999999999999999987654
No 247
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=30.71 E-value=82 Score=31.48 Aligned_cols=41 Identities=24% Similarity=0.174 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHcCCcccCCCCcEEEEcC--CCchhHHHHHHHHH
Q 048728 36 RFELLSDYLKILDLDVAISQLKVIHVAG--TKGKGSTCTFTESI 77 (536)
Q Consensus 36 ~l~~~~~~L~~Lg~~~p~~~l~vI~VTG--TnGKTST~~ml~~I 77 (536)
-++.+.++...+|.++ .-.++.|+|.| +.||||+...+..+
T Consensus 7 l~~~i~~l~~~~G~~~-~i~~p~i~vvG~~~~GKSt~l~~i~g~ 49 (240)
T smart00053 7 LVNKLQDAFSALGQEK-DLDLPQIAVVGGQSAGKSSVLENFVGR 49 (240)
T ss_pred HHHHHHHHHHHcCCCC-CCCCCeEEEEcCCCccHHHHHHHHhCC
Confidence 3566667666788643 35678899998 77999998877754
No 248
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=30.71 E-value=38 Score=33.13 Aligned_cols=25 Identities=12% Similarity=0.280 Sum_probs=21.2
Q ss_pred CcEEEEcC--CCchhHHHHHHHHHHHh
Q 048728 56 LKVIHVAG--TKGKGSTCTFTESILRN 80 (536)
Q Consensus 56 l~vI~VTG--TnGKTST~~ml~~IL~~ 80 (536)
.-+|||+| ..||||.|..+..+|..
T Consensus 4 ~~ivgiSG~TnsGKTTLak~l~~~f~~ 30 (225)
T KOG3308|consen 4 TLIVGISGCTNSGKTTLAKSLHRFFPG 30 (225)
T ss_pred EEEEEeecccCCCHhHHHHHHHHHccC
Confidence 34899999 46999999999999974
No 249
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=30.69 E-value=53 Score=31.50 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=20.5
Q ss_pred cEEEEcCC--CchhHHHHHHHHHHHh
Q 048728 57 KVIHVAGT--KGKGSTCTFTESILRN 80 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~IL~~ 80 (536)
.+|+|+|- .||||.+..|...|..
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 58999996 5899999999998864
No 250
>PRK14709 hypothetical protein; Provisional
Probab=30.68 E-value=1.1e+02 Score=33.85 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=17.3
Q ss_pred cCCCchhHHHHHHHHHHHh
Q 048728 62 AGTKGKGSTCTFTESILRN 80 (536)
Q Consensus 62 TGTnGKTST~~ml~~IL~~ 80 (536)
+|-|||||...+|..+|-.
T Consensus 213 ~G~NGKSt~~~~i~~llG~ 231 (469)
T PRK14709 213 GGGNGKSVFLNVLAGILGD 231 (469)
T ss_pred CCCCcHHHHHHHHHHHHhh
Confidence 6889999999999999964
No 251
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=30.49 E-value=63 Score=34.26 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=28.8
Q ss_pred cEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 57 KVIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
-+|+|+|- .||||.+..|...|+.. ++++.+..
T Consensus 6 ~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~ik~ 40 (369)
T PRK14490 6 FEIAFCGYSGSGKTTLITALVRRLSER-FSVGYYKH 40 (369)
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEEEe
Confidence 58999994 58999999999999998 99998864
No 252
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=30.29 E-value=69 Score=35.90 Aligned_cols=33 Identities=24% Similarity=0.113 Sum_probs=28.6
Q ss_pred CCcEEEEcCCC------chhHHHHHHHHHHHhCCCCEEE
Q 048728 55 QLKVIHVAGTK------GKGSTCTFTESILRNCGFRTGL 87 (536)
Q Consensus 55 ~l~vI~VTGTn------GKTST~~ml~~IL~~~G~k~g~ 87 (536)
+-+.|-||+.+ |||||+-=|...|.+.|+++..
T Consensus 62 ~gklIlVTaitPTP~GEGKtTttIGL~~aL~~lgk~~~~ 100 (587)
T PRK13507 62 DGKYIDVTAITPTPLGEGKSTTTMGLVQGLGKRGKKVSG 100 (587)
T ss_pred CCeEEEEeccCCCCCCCCccchhhhHHHHHHhhcCceEE
Confidence 45789999976 9999999999999999988743
No 253
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=30.27 E-value=43 Score=33.56 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=16.9
Q ss_pred cEEEEcCC--CchhHHHHHHHHH
Q 048728 57 KVIHVAGT--KGKGSTCTFTESI 77 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~I 77 (536)
.+|||||. .||||++.++..-
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~ 24 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREE 24 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999995 7899988877653
No 254
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=30.04 E-value=45 Score=32.27 Aligned_cols=42 Identities=12% Similarity=0.260 Sum_probs=30.4
Q ss_pred CCCcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHH
Q 048728 54 SQLKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISED 110 (536)
Q Consensus 54 ~~l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~ 110 (536)
++-..++|-|-| ||+|.+.|++-|..- ||. +|.+||+++.-.
T Consensus 37 ~~~QTlaiIG~NGSGKSTLakMlaGmi~P--------TsG-------~il~n~~~L~~~ 80 (267)
T COG4167 37 REGQTLAIIGENGSGKSTLAKMLAGMIEP--------TSG-------EILINDHPLHFG 80 (267)
T ss_pred cCCcEEEEEccCCCcHhHHHHHHhcccCC--------CCc-------eEEECCcccccc
Confidence 455678888866 689999999887753 223 899999887543
No 255
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=29.89 E-value=70 Score=34.80 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=26.2
Q ss_pred cEEEEcCC--CchhHHHHHHHHHH-HhCCCCEEEEeC
Q 048728 57 KVIHVAGT--KGKGSTCTFTESIL-RNCGFRTGLFTS 90 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~IL-~~~G~k~g~~tS 90 (536)
.+|.|+|. .|||||+.-|+.-+ ...|.++++++.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~ 260 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTT 260 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecc
Confidence 57778875 58999999999754 567888887664
No 256
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=29.88 E-value=69 Score=30.58 Aligned_cols=31 Identities=13% Similarity=0.130 Sum_probs=25.5
Q ss_pred cEEEEcCCCchhHHHHHHHHHHHhCC--CCEEE
Q 048728 57 KVIHVAGTKGKGSTCTFTESILRNCG--FRTGL 87 (536)
Q Consensus 57 ~vI~VTGTnGKTST~~ml~~IL~~~G--~k~g~ 87 (536)
-.|||==-+|||.|++-+...||++| +||..
T Consensus 22 Gli~VYtGdGKGKTTAAlGlalRAaG~G~rV~i 54 (178)
T PRK07414 22 GLVQVFTSSQRNFFTSVMAQALRIAGQGTPVLI 54 (178)
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHhcCCCEEEE
Confidence 47888667999999999999999965 56654
No 257
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=29.53 E-value=57 Score=32.65 Aligned_cols=24 Identities=17% Similarity=0.164 Sum_probs=20.0
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHH
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILR 79 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~ 79 (536)
=.+++|.|-| ||||...+|.-++.
T Consensus 45 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 45 KTVTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3589999986 89999999998775
No 258
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=29.46 E-value=1e+02 Score=34.60 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHcCCcccCCCCcEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 36 RFELLSDYLKILDLDVAISQLKVIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 36 ~l~~~~~~L~~Lg~~~p~~~l~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
.++.++.||+.+..-.|...-++.-|||- .|||||...|+.+| |+..-=+..|
T Consensus 90 KI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel---g~~~~Ew~Np 144 (634)
T KOG1970|consen 90 KISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL---GYQLIEWSNP 144 (634)
T ss_pred hHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh---CceeeeecCC
Confidence 58899999995553356666679999994 68999999988877 7776666655
No 259
>PRK07952 DNA replication protein DnaC; Validated
Probab=29.16 E-value=98 Score=30.95 Aligned_cols=34 Identities=18% Similarity=0.077 Sum_probs=24.7
Q ss_pred EEEEcC--CCchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 58 VIHVAG--TKGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 58 vI~VTG--TnGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
.+-+.| -.|||+.+.-+..-|...|+++.+++.+
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~ 136 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVA 136 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHH
Confidence 444554 4699999999998888888877655443
No 260
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=29.07 E-value=84 Score=29.84 Aligned_cols=30 Identities=33% Similarity=0.402 Sum_probs=23.7
Q ss_pred cEEEEcCCCchhHHHHHHHHHHHhC--CCCEE
Q 048728 57 KVIHVAGTKGKGSTCTFTESILRNC--GFRTG 86 (536)
Q Consensus 57 ~vI~VTGTnGKTST~~ml~~IL~~~--G~k~g 86 (536)
-.|+|=+-+|||.|++.+...++++ |++|.
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ 37 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVG 37 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEE
Confidence 3566666699999999999999985 55653
No 261
>PRK04040 adenylate kinase; Provisional
Probab=29.02 E-value=60 Score=30.96 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=23.8
Q ss_pred cEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 57 KVIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
++|.|+|. .||||.+..+..-|. .++++..+++
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~-~~~~~~~~g~ 37 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK-EDYKIVNFGD 37 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc-cCCeEEecch
Confidence 57888885 689999999988885 2555544443
No 262
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=28.62 E-value=51 Score=30.85 Aligned_cols=24 Identities=21% Similarity=0.463 Sum_probs=19.0
Q ss_pred EEEEcCC--CchhHHHHHHHHHHHhCCCCE
Q 048728 58 VIHVAGT--KGKGSTCTFTESILRNCGFRT 85 (536)
Q Consensus 58 vI~VTGT--nGKTST~~ml~~IL~~~G~k~ 85 (536)
+|+|||. .||||.+.++.. .|+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~----~g~~~ 26 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE----LGIPV 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH----CCCCE
Confidence 4889985 689999999887 47654
No 263
>PF12846 AAA_10: AAA-like domain
Probab=28.54 E-value=58 Score=32.33 Aligned_cols=29 Identities=21% Similarity=0.195 Sum_probs=16.9
Q ss_pred EEEEcCCCchhHHHHHHHHHHHhCCCCEEE
Q 048728 58 VIHVAGTKGKGSTCTFTESILRNCGFRTGL 87 (536)
Q Consensus 58 vI~VTGTnGKTST~~ml~~IL~~~G~k~g~ 87 (536)
++|-||+ |||++...+-.-+-..|..+..
T Consensus 6 i~G~tGs-GKT~~~~~l~~~~~~~g~~~~i 34 (304)
T PF12846_consen 6 ILGKTGS-GKTTLLKNLLEQLIRRGPRVVI 34 (304)
T ss_pred EECCCCC-cHHHHHHHHHHHHHHcCCCEEE
Confidence 4455553 7777776665555556755543
No 264
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=28.53 E-value=44 Score=32.55 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=19.2
Q ss_pred CCcEEEEcCCC--chhHHHHHHHHHHH
Q 048728 55 QLKVIHVAGTK--GKGSTCTFTESILR 79 (536)
Q Consensus 55 ~l~vI~VTGTn--GKTST~~ml~~IL~ 79 (536)
+-.+++|.|-| ||||...+|..++.
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34589999987 68888888877664
No 265
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=28.49 E-value=1.1e+02 Score=26.03 Aligned_cols=30 Identities=20% Similarity=0.087 Sum_probs=20.0
Q ss_pred cEEEEcCC--CchhHHHHHHHHHHHhCCCCEE
Q 048728 57 KVIHVAGT--KGKGSTCTFTESILRNCGFRTG 86 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g 86 (536)
+.+.|+|- .|||+++..+..-+...+.++.
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~ 51 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFL 51 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeE
Confidence 45666664 5788888888877765455443
No 266
>PLN02759 Formate--tetrahydrofolate ligase
Probab=28.34 E-value=88 Score=35.36 Aligned_cols=32 Identities=22% Similarity=0.072 Sum_probs=27.5
Q ss_pred CCcEEEEcCCC------chhHHHHHHHHHHHh-CCCCEE
Q 048728 55 QLKVIHVAGTK------GKGSTCTFTESILRN-CGFRTG 86 (536)
Q Consensus 55 ~l~vI~VTGTn------GKTST~~ml~~IL~~-~G~k~g 86 (536)
+-+.|-||+.+ |||||+-=|...|.+ .|+++.
T Consensus 68 ~gklIlVTaitPTP~GEGKTTttIGL~~aL~~~lgk~~~ 106 (637)
T PLN02759 68 DGYYVVVAGITPTPLGEGKSTTTIGLCQALGAYLDKKVV 106 (637)
T ss_pred CCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHhCCeeE
Confidence 34789999876 999999999999997 898764
No 267
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=28.23 E-value=1.4e+02 Score=30.67 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=25.9
Q ss_pred HHHHHHHHHc-CCcccCCCCcEEEEcC--CCchhHHHHHHHHHH
Q 048728 38 ELLSDYLKIL-DLDVAISQLKVIHVAG--TKGKGSTCTFTESIL 78 (536)
Q Consensus 38 ~~~~~~L~~L-g~~~p~~~l~vI~VTG--TnGKTST~~ml~~IL 78 (536)
..+..+++.+ ++..-...-..|.++| -.||||+..+|+..|
T Consensus 114 ~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 114 ARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred HHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 3444444442 3333333445788887 568999999998777
No 268
>PTZ00202 tuzin; Provisional
Probab=28.16 E-value=1.1e+02 Score=33.76 Aligned_cols=49 Identities=20% Similarity=0.326 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHcCCcccCCCCcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 35 DRFELLSDYLKILDLDVAISQLKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 35 ~~l~~~~~~L~~Lg~~~p~~~l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
..+..++.+|..++.+.| +++.|||.+ ||||.+..+..-+ + .+.+|..|
T Consensus 269 aEla~Lr~VL~~~d~~~p----rivvLtG~~G~GKTTLlR~~~~~l---~-~~qL~vNp 319 (550)
T PTZ00202 269 AEESWVRQVLRRLDTAHP----RIVVFTGFRGCGKSSLCRSAVRKE---G-MPAVFVDV 319 (550)
T ss_pred HHHHHHHHHHhccCCCCc----eEEEEECCCCCCHHHHHHHHHhcC---C-ceEEEECC
Confidence 356677777775543322 489999976 6777766665433 3 56777777
No 269
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=28.16 E-value=70 Score=32.16 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=27.6
Q ss_pred HHHHHHHHHHcCCcccCCCCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEE
Q 048728 37 FELLSDYLKILDLDVAISQLKVIHVAGTKGKGSTCTFTESILRNCGFRTGL 87 (536)
Q Consensus 37 l~~~~~~L~~Lg~~~p~~~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~ 87 (536)
+.+++.+++ | .|....-+-|=.|| ||||+...+-.-+...|++..-
T Consensus 40 ~~Nt~~Fl~--G--~pannvLL~G~rGt-GKSSlVkall~~y~~~GLRlIe 85 (249)
T PF05673_consen 40 IENTEQFLQ--G--LPANNVLLWGARGT-GKSSLVKALLNEYADQGLRLIE 85 (249)
T ss_pred HHHHHHHHc--C--CCCcceEEecCCCC-CHHHHHHHHHHHHhhcCceEEE
Confidence 344555555 3 34444333333343 8999888888888888877643
No 270
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=28.02 E-value=88 Score=28.41 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=22.3
Q ss_pred EEEcC--CCchhHHHHHHHHHHHhCCCCEEE
Q 048728 59 IHVAG--TKGKGSTCTFTESILRNCGFRTGL 87 (536)
Q Consensus 59 I~VTG--TnGKTST~~ml~~IL~~~G~k~g~ 87 (536)
|.|+| -.||||.+..|...|...|.++.+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~ 32 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYV 32 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 45555 469999999999999877765543
No 271
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=27.75 E-value=58 Score=32.43 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=19.6
Q ss_pred CCcEEEEcCCC--chhHHHHHHHHHHH
Q 048728 55 QLKVIHVAGTK--GKGSTCTFTESILR 79 (536)
Q Consensus 55 ~l~vI~VTGTn--GKTST~~ml~~IL~ 79 (536)
+-.+++|+|-| ||||...+|..++.
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 64 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTFNRMYE 64 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 34589999987 79888888887664
No 272
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=27.75 E-value=3.6e+02 Score=31.32 Aligned_cols=29 Identities=21% Similarity=0.028 Sum_probs=22.2
Q ss_pred EEEEecccCCcccccccccCCcEEEEcCCCchh
Q 048728 155 VAILEVGLGGRFDATNVVQKPVVCGISSLGYDH 187 (536)
Q Consensus 155 ~aVlEvg~gg~~D~tn~i~~P~vaVITnI~~DH 187 (536)
-+|+| ||--+|.+++..++-++..-+.+-
T Consensus 139 ~~v~e----GRdigtvv~p~a~~K~~l~A~~~~ 167 (712)
T PRK09518 139 GIVAE----GRDITTVVAPDAEVRILLTAREEV 167 (712)
T ss_pred cEEEe----cCccceEEecCCCeEEEEECCHHH
Confidence 48888 788888888777888887766653
No 273
>PRK06851 hypothetical protein; Provisional
Probab=27.68 E-value=88 Score=33.36 Aligned_cols=36 Identities=11% Similarity=0.221 Sum_probs=30.6
Q ss_pred CcEEEEcC--CCchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 56 LKVIHVAG--TKGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 56 l~vI~VTG--TnGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
-+++-++| -.||||+..-+...+.+.|+++..+-++
T Consensus 30 ~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~ 67 (367)
T PRK06851 30 NRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCS 67 (367)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcC
Confidence 36899999 6789999999999999899998776655
No 274
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=27.63 E-value=1.9e+02 Score=30.15 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=17.2
Q ss_pred cEEEEcCC--CchhHHH-HHHHHHHHhCCC
Q 048728 57 KVIHVAGT--KGKGSTC-TFTESILRNCGF 83 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~-~ml~~IL~~~G~ 83 (536)
-.|-|||- .|||||. +|+..|=+..-+
T Consensus 126 GLILVTGpTGSGKSTTlAamId~iN~~~~~ 155 (353)
T COG2805 126 GLILVTGPTGSGKSTTLAAMIDYINKHKAK 155 (353)
T ss_pred ceEEEeCCCCCcHHHHHHHHHHHHhccCCc
Confidence 37888884 5787774 566666555433
No 275
>PRK13976 thymidylate kinase; Provisional
Probab=27.57 E-value=63 Score=31.41 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=24.9
Q ss_pred EEEEcC--CCchhHHHHHHHHHHHhC-C-CCEEEEeCC
Q 048728 58 VIHVAG--TKGKGSTCTFTESILRNC-G-FRTGLFTSP 91 (536)
Q Consensus 58 vI~VTG--TnGKTST~~ml~~IL~~~-G-~k~g~~tSp 91 (536)
.|.|-| -.||||.+.+|..-|+.. | .++.+..-|
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP 39 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREP 39 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCC
Confidence 345555 359999999999999986 6 466555555
No 276
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=27.17 E-value=99 Score=28.88 Aligned_cols=30 Identities=37% Similarity=0.560 Sum_probs=24.2
Q ss_pred EEEEcCCCchhHHHHHHHHHHHhC--CCCEEE
Q 048728 58 VIHVAGTKGKGSTCTFTESILRNC--GFRTGL 87 (536)
Q Consensus 58 vI~VTGTnGKTST~~ml~~IL~~~--G~k~g~ 87 (536)
.|+|=+.+|||.|++.+...++++ |++|.+
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~ 35 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGV 35 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 688866669999999999999985 566654
No 277
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=26.92 E-value=92 Score=30.06 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=25.3
Q ss_pred cEEEEcCCCchhHHHHHHHHHHHhCC--CCEE
Q 048728 57 KVIHVAGTKGKGSTCTFTESILRNCG--FRTG 86 (536)
Q Consensus 57 ~vI~VTGTnGKTST~~ml~~IL~~~G--~k~g 86 (536)
-.|+|=+-+|||.|++.+...++++| ++|.
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ 54 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVG 54 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEE
Confidence 47899999999999999999999864 5553
No 278
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=26.84 E-value=51 Score=31.64 Aligned_cols=38 Identities=29% Similarity=0.504 Sum_probs=26.8
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecC
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDIS 108 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is 108 (536)
-.+++|.|-| ||||...+|.-++... .| .|.++|.++.
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G------------~i~~~g~~~~ 69 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLDRPT---SG------------EVRVDGTDIS 69 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCcCCC---ce------------eEEECCEehh
Confidence 3589999987 7999888887766421 11 4677887664
No 279
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=26.69 E-value=50 Score=32.30 Aligned_cols=38 Identities=16% Similarity=0.245 Sum_probs=26.2
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecC
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDIS 108 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is 108 (536)
-.+++|+|-| ||||...+|.-++... .-+|.++|.++.
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---------------~G~i~~~g~~~~ 66 (240)
T PRK09493 27 GEVVVIIGPSGSGKSTLLRCINKLEEIT---------------SGDLIVDGLKVN 66 (240)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCC---------------ceEEEECCEECC
Confidence 3589999987 6888777777655311 115788888765
No 280
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=26.57 E-value=48 Score=34.14 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=28.1
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecC
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDIS 108 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is 108 (536)
-.++++.|-| ||||+..+|..++... .| .+.++|.++.
T Consensus 33 Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G------------~v~i~G~~~~ 72 (306)
T PRK13537 33 GECFGLLGPNGAGKTTTLRMLLGLTHPD---AG------------SISLCGEPVP 72 (306)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCC---ce------------EEEECCEecc
Confidence 3589999988 7999999998777531 11 5778888764
No 281
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=26.44 E-value=75 Score=32.34 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=22.5
Q ss_pred CCCchhHHHHHHHHHHHhCCCCEEEEe
Q 048728 63 GTKGKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 63 GTnGKTST~~ml~~IL~~~G~k~g~~t 89 (536)
|-=||+||++=|+..|...|+|+-.++
T Consensus 9 GGIGKST~~~Nlsaala~~G~kVl~iG 35 (273)
T PF00142_consen 9 GGIGKSTTASNLSAALAEMGKKVLQIG 35 (273)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CCcccChhhhHHHHHHHhccceeeEec
Confidence 677999999999999999999997765
No 282
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=26.37 E-value=1.8e+02 Score=32.68 Aligned_cols=39 Identities=21% Similarity=0.177 Sum_probs=27.4
Q ss_pred cCCCCcEEEEcC--CCchhHHHHHHHHHHHhC--CCCEEEEeC
Q 048728 52 AISQLKVIHVAG--TKGKGSTCTFTESILRNC--GFRTGLFTS 90 (536)
Q Consensus 52 p~~~l~vI~VTG--TnGKTST~~ml~~IL~~~--G~k~g~~tS 90 (536)
+..+-.+|+|.| -.|||||+..|...+... |.++++++.
T Consensus 346 ~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdt 388 (559)
T PRK12727 346 PLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTT 388 (559)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEec
Confidence 334456888876 458999999888776543 567777654
No 283
>PLN02422 dephospho-CoA kinase
Probab=26.30 E-value=66 Score=31.98 Aligned_cols=25 Identities=20% Similarity=0.492 Sum_probs=19.3
Q ss_pred cEEEEcCC--CchhHHHHHHHHHHHhCCCCE
Q 048728 57 KVIHVAGT--KGKGSTCTFTESILRNCGFRT 85 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~IL~~~G~k~ 85 (536)
++|+|||. .||||++.++. +.|+.+
T Consensus 2 ~~igltG~igsGKstv~~~l~----~~g~~~ 28 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFK----SSGIPV 28 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHH----HCCCeE
Confidence 47999995 68999999887 357643
No 284
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=26.28 E-value=97 Score=29.61 Aligned_cols=29 Identities=28% Similarity=0.208 Sum_probs=21.4
Q ss_pred EEcCCCchhHHHHHHHHHHHhCCCCEEEEe
Q 048728 60 HVAGTKGKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 60 ~VTGTnGKTST~~ml~~IL~~~G~k~g~~t 89 (536)
|.+|| |||++...+...+...|+++...+
T Consensus 25 G~aGt-GKT~~l~~~~~~~~~~g~~v~~~a 53 (196)
T PF13604_consen 25 GPAGT-GKTTLLKALAEALEAAGKRVIGLA 53 (196)
T ss_dssp ESTTS-THHHHHHHHHHHHHHTT--EEEEE
T ss_pred ECCCC-CHHHHHHHHHHHHHhCCCeEEEEC
Confidence 55553 799999999999999998775443
No 285
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.04 E-value=52 Score=33.04 Aligned_cols=39 Identities=21% Similarity=0.467 Sum_probs=27.7
Q ss_pred CCcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecC
Q 048728 55 QLKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDIS 108 (536)
Q Consensus 55 ~l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is 108 (536)
.-.+++|.|.| ||||...+|..++... .| .|.++|.++.
T Consensus 49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G------------~i~i~g~~~~ 89 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINRLIEPT---SG------------KVLIDGQDIA 89 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC---Ce------------EEEECCEEcc
Confidence 34589999997 7999888887766421 11 5778887764
No 286
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=25.98 E-value=57 Score=32.21 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=17.8
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHH
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILR 79 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~ 79 (536)
-.+++|.|-| ||||...+|..++.
T Consensus 30 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 55 (253)
T PRK14267 30 NGVFALMGPSGCGKSTLLRTFNRLLE 55 (253)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 3588999987 68887777776654
No 287
>PLN02348 phosphoribulokinase
Probab=25.90 E-value=63 Score=34.73 Aligned_cols=27 Identities=22% Similarity=0.172 Sum_probs=23.0
Q ss_pred CCcEEEEcC--CCchhHHHHHHHHHHHhC
Q 048728 55 QLKVIHVAG--TKGKGSTCTFTESILRNC 81 (536)
Q Consensus 55 ~l~vI~VTG--TnGKTST~~ml~~IL~~~ 81 (536)
+..+|+|+| -.||||.+..|..+|...
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~ 76 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTSVFGGA 76 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 346999999 578999999999999754
No 288
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=25.62 E-value=70 Score=38.99 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=24.0
Q ss_pred EEEEcCCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 58 VIHVAGTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 58 vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
++|-+|| ||||+...+..+++..|+++...
T Consensus 402 v~G~AGT-GKTt~l~~~~~~~e~~G~~V~g~ 431 (1102)
T PRK13826 402 VVGRAGA-GKTTMMKAAREAWEAAGYRVVGG 431 (1102)
T ss_pred EEeCCCC-CHHHHHHHHHHHHHHcCCeEEEE
Confidence 4555555 99999999999999999887543
No 289
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=25.58 E-value=53 Score=34.17 Aligned_cols=43 Identities=21% Similarity=0.407 Sum_probs=28.9
Q ss_pred CCcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecC
Q 048728 55 QLKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDIS 108 (536)
Q Consensus 55 ~l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is 108 (536)
+-.+++|.|-| ||||+..+|..++...|. .++ -+|.++|.++.
T Consensus 32 ~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~----~~~-------G~i~~~G~~i~ 76 (326)
T PRK11022 32 QGEVVGIVGESGSGKSVSSLAIMGLIDYPGR----VMA-------EKLEFNGQDLQ 76 (326)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCC----Ccc-------eEEEECCEECC
Confidence 44589999987 688888888877752221 111 25788898764
No 290
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=25.39 E-value=58 Score=31.69 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=19.4
Q ss_pred cEEEEcC--CCchhHHHHHHHHHHHhCCCC
Q 048728 57 KVIHVAG--TKGKGSTCTFTESILRNCGFR 84 (536)
Q Consensus 57 ~vI~VTG--TnGKTST~~ml~~IL~~~G~k 84 (536)
-+|+||| -.||||++.++..-| |++
T Consensus 7 ~~IglTG~iGsGKStv~~~l~~~l---g~~ 33 (204)
T PRK14733 7 YPIGITGGIASGKSTATRILKEKL---NLN 33 (204)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHc---CCe
Confidence 3799999 589999999887633 654
No 291
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=25.38 E-value=3.1e+02 Score=27.53 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=19.8
Q ss_pred cEEEEcCCC--chhHHHH-HHHHHHHhCCCCEEEEeCC
Q 048728 57 KVIHVAGTK--GKGSTCT-FTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 57 ~vI~VTGTn--GKTST~~-ml~~IL~~~G~k~g~~tSp 91 (536)
.+|.|+|.. |||||.. ++..+. ..+.++..+-.|
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~-~~~~~iitiEdp 117 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELN-TPEKNIITVEDP 117 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhC-CCCCeEEEECCC
Confidence 478888865 6777775 334443 244455554444
No 292
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=25.20 E-value=74 Score=30.57 Aligned_cols=30 Identities=27% Similarity=0.320 Sum_probs=26.1
Q ss_pred cEEEEcC--CCchhHHHHHHHHHHHhCCCCEE
Q 048728 57 KVIHVAG--TKGKGSTCTFTESILRNCGFRTG 86 (536)
Q Consensus 57 ~vI~VTG--TnGKTST~~ml~~IL~~~G~k~g 86 (536)
.+|=.|| -.||||.+..|+..|.+.|+.+-
T Consensus 24 ~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y 55 (197)
T COG0529 24 AVIWFTGLSGSGKSTIANALEEKLFAKGYHVY 55 (197)
T ss_pred eEEEeecCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 4888888 46899999999999999999763
No 293
>PRK08181 transposase; Validated
Probab=25.20 E-value=61 Score=32.94 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=26.8
Q ss_pred CCCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 54 SQLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 54 ~~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
..+-++|=+|| |||-.+.-+..-+...|+++.+++.+
T Consensus 107 ~nlll~Gp~Gt-GKTHLa~Aia~~a~~~g~~v~f~~~~ 143 (269)
T PRK08181 107 ANLLLFGPPGG-GKSHLAAAIGLALIENGWRVLFTRTT 143 (269)
T ss_pred ceEEEEecCCC-cHHHHHHHHHHHHHHcCCceeeeeHH
Confidence 34555666666 99988888887777789888665554
No 294
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=25.15 E-value=67 Score=33.98 Aligned_cols=44 Identities=16% Similarity=0.147 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHcCCcccCCCCcEEEEcCCC--chhHHHHHHHHHHHhCC
Q 048728 36 RFELLSDYLKILDLDVAISQLKVIHVAGTK--GKGSTCTFTESILRNCG 82 (536)
Q Consensus 36 ~l~~~~~~L~~Lg~~~p~~~l~vI~VTGTn--GKTST~~ml~~IL~~~G 82 (536)
+-+.++..|..... +| ++.-|.|+|-+ ||||++.++..+|....
T Consensus 21 Gq~~~k~al~~~~~-~p--~~~~vli~G~~GtGKs~~ar~~~~~l~~~~ 66 (350)
T CHL00081 21 GQEEMKLALILNVI-DP--KIGGVMIMGDRGTGKSTTIRALVDLLPEIE 66 (350)
T ss_pred ChHHHHHHHHHhcc-CC--CCCeEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 56777777775543 23 33345566654 79999999999998654
No 295
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=25.15 E-value=69 Score=31.57 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=17.3
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHH
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILR 79 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~ 79 (536)
-.+++|+|-| ||||...+|..++.
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14251 30 KELTALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhccc
Confidence 3589999987 57777777766553
No 296
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=24.66 E-value=76 Score=31.89 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=19.0
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHH
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILR 79 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~ 79 (536)
=.+++|.|-| ||||...+|..++.
T Consensus 50 Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 50 NEVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3589999976 68888888887765
No 297
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=24.63 E-value=94 Score=30.69 Aligned_cols=30 Identities=17% Similarity=0.155 Sum_probs=23.1
Q ss_pred EEEcC--CCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 59 IHVAG--TKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 59 I~VTG--TnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
|.++| ..||||.+..|+.-|...|+++..+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i 33 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIIL 33 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEE
Confidence 34444 4699999999999998888776544
No 298
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=24.61 E-value=66 Score=31.67 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=17.1
Q ss_pred cEEEEcCCC--chhHHHHHHHHHHH
Q 048728 57 KVIHVAGTK--GKGSTCTFTESILR 79 (536)
Q Consensus 57 ~vI~VTGTn--GKTST~~ml~~IL~ 79 (536)
.+++|.|-| ||||...+|..++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~Gl~~ 54 (250)
T PRK14262 30 QITAIIGPSGCGKTTLLRSINRMND 54 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccc
Confidence 589999987 57787777776553
No 299
>PRK05541 adenylylsulfate kinase; Provisional
Probab=24.39 E-value=1.5e+02 Score=27.24 Aligned_cols=32 Identities=19% Similarity=0.018 Sum_probs=24.4
Q ss_pred CCcEEEEcCC--CchhHHHHHHHHHHHhCCCCEE
Q 048728 55 QLKVIHVAGT--KGKGSTCTFTESILRNCGFRTG 86 (536)
Q Consensus 55 ~l~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g 86 (536)
+-.+|.++|- .||||.+..+..-|...+..+.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~ 39 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVI 39 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 3457888885 5799999999999987665443
No 300
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=24.24 E-value=83 Score=31.02 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=17.9
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHH
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESIL 78 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL 78 (536)
-.+++|.|-| ||||...+|.-++
T Consensus 32 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 32 NQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3589999987 6888888887665
No 301
>PRK04296 thymidine kinase; Provisional
Probab=24.14 E-value=1.1e+02 Score=29.03 Aligned_cols=33 Identities=15% Similarity=0.333 Sum_probs=22.1
Q ss_pred cEEEEcCCCchhHHHHHHHHHHH--hCCCCEEEEe
Q 048728 57 KVIHVAGTKGKGSTCTFTESILR--NCGFRTGLFT 89 (536)
Q Consensus 57 ~vI~VTGTnGKTST~~ml~~IL~--~~G~k~g~~t 89 (536)
.++-|||--|+|-|+.++..+.+ .+|.++.++.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 36788998666666666655554 4687777663
No 302
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=24.01 E-value=93 Score=31.19 Aligned_cols=27 Identities=19% Similarity=0.086 Sum_probs=18.9
Q ss_pred CcEEEEcCCCchhHHHHHHHHHHHhCCCCEE
Q 048728 56 LKVIHVAGTKGKGSTCTFTESILRNCGFRTG 86 (536)
Q Consensus 56 l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g 86 (536)
+-++|-+|| |||+.+..++..+ |.++.
T Consensus 24 vLL~G~~Gt-GKT~lA~~la~~l---g~~~~ 50 (262)
T TIGR02640 24 VHLRGPAGT-GKTTLAMHVARKR---DRPVM 50 (262)
T ss_pred EEEEcCCCC-CHHHHHHHHHHHh---CCCEE
Confidence 335666665 9999999998744 65543
No 303
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=23.94 E-value=1.2e+02 Score=30.74 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=28.2
Q ss_pred CcEEEEcC--CCchhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 56 LKVIHVAG--TKGKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 56 l~vI~VTG--TnGKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
..+|++.| ..||||+...+...+...|.++++++.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~ 111 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 111 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEec
Confidence 36888886 568999999999999887888887654
No 304
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=23.83 E-value=86 Score=31.10 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=18.8
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHH
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILR 79 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~ 79 (536)
-.+++|.|.| ||||...+|..++.
T Consensus 38 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 38 NEVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3589999987 68888888887764
No 305
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=23.58 E-value=54 Score=33.32 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=20.6
Q ss_pred EEEEcCCC--chhHHHHHHHHHHHhCC
Q 048728 58 VIHVAGTK--GKGSTCTFTESILRNCG 82 (536)
Q Consensus 58 vI~VTGTn--GKTST~~ml~~IL~~~G 82 (536)
+|+|+|.+ ||||.+.+|..+|...|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~ 27 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDL 27 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCc
Confidence 47888864 79999999999997654
No 306
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=23.58 E-value=1e+02 Score=29.37 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=14.7
Q ss_pred EEEEcCCC--chhHHHHHHHHHHH
Q 048728 58 VIHVAGTK--GKGSTCTFTESILR 79 (536)
Q Consensus 58 vI~VTGTn--GKTST~~ml~~IL~ 79 (536)
+|.|+|-. |||||...+..-+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 57788765 59999875444443
No 307
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=23.55 E-value=68 Score=30.84 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=18.9
Q ss_pred cEEEEcCC--CchhHHHHHHHHHHHhCCCC
Q 048728 57 KVIHVAGT--KGKGSTCTFTESILRNCGFR 84 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~IL~~~G~k 84 (536)
.+|+|||. .||||.+.++.. .|+.
T Consensus 2 ~~igitG~igsGKst~~~~l~~----~g~~ 27 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS----EGFL 27 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH----CCCe
Confidence 47999996 689999998874 4653
No 308
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=23.32 E-value=1.3e+02 Score=33.11 Aligned_cols=36 Identities=22% Similarity=0.246 Sum_probs=31.2
Q ss_pred CcEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 56 LKVIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 56 l~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
-.=|-|+|. .||||-+.-|+..+...|+-+-..-||
T Consensus 263 aeGILIAG~PGaGKsTFaqAlAefy~~~GkiVKTmEsP 300 (604)
T COG1855 263 AEGILIAGAPGAGKSTFAQALAEFYASQGKIVKTMESP 300 (604)
T ss_pred hcceEEecCCCCChhHHHHHHHHHHHhcCcEEeeccCc
Confidence 346888885 689999999999999999878888888
No 309
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=23.31 E-value=1.8e+02 Score=26.34 Aligned_cols=57 Identities=23% Similarity=0.228 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHcCCcccCCCCcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeCCccccccc
Q 048728 36 RFELLSDYLKILDLDVAISQLKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTSPHLIDVRE 98 (536)
Q Consensus 36 ~l~~~~~~L~~Lg~~~p~~~l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tSphl~~~~E 98 (536)
+.+.+.++.++|+ .-...-.+|.+.|.. ||||.+..+...| |.. +.++||...-+++
T Consensus 4 s~~~t~~l~~~l~--~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l---g~~-~~v~SPTf~lv~~ 62 (133)
T TIGR00150 4 DEKAMDKFGKAFA--KPLDFGTVVLLKGDLGAGKTTLVQGLLQGL---GIQ-GNVTSPTFTLVNE 62 (133)
T ss_pred CHHHHHHHHHHHH--HhCCCCCEEEEEcCCCCCHHHHHHHHHHHc---CCC-CcccCCCeeeeee
Confidence 4567777777776 223344589999964 6877777766665 433 3578886444433
No 310
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=23.23 E-value=66 Score=32.04 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=18.8
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHH
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILR 79 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~ 79 (536)
-.+++|.|-| ||||...+|..++.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3589999987 78888888876654
No 311
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=23.17 E-value=1.2e+02 Score=28.44 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=22.1
Q ss_pred cEEEEcC--CCchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 57 KVIHVAG--TKGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 57 ~vI~VTG--TnGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
|++-||| -.||||+-.-+-. ....|.+++++..-
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne 36 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNE 36 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECS
T ss_pred CEEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEcc
Confidence 5778888 4678776444433 56679999987654
No 312
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=23.05 E-value=70 Score=31.49 Aligned_cols=41 Identities=15% Similarity=0.289 Sum_probs=25.7
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecC
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDIS 108 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is 108 (536)
-.+++|+|-| ||||...+|..++.... | ..-+|.++|.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~--------~----~~G~i~~~g~~i~ 70 (246)
T PRK14269 28 NKITALIGASGCGKSTFLRCFNRMNDKIA--------K----IDGLVEIEGKDVK 70 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCCC--------C----CceEEEECCEecc
Confidence 3589999976 68887777765543100 0 1125788888764
No 313
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.87 E-value=72 Score=30.50 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=17.9
Q ss_pred CCcEEEEcCCC--chhHHHHHHHHHHH
Q 048728 55 QLKVIHVAGTK--GKGSTCTFTESILR 79 (536)
Q Consensus 55 ~l~vI~VTGTn--GKTST~~ml~~IL~ 79 (536)
+-.+++|.|-| ||||...+|..++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34589999987 67777777765553
No 314
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.71 E-value=70 Score=31.19 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=25.9
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecC
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDIS 108 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is 108 (536)
=.+++|.|-| ||||...+|..++... +. .|.++|.++.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--------~G-------~i~~~g~~~~ 66 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNGLVEPT--------SG-------SVLIDGTDIN 66 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcCCC--------Cc-------eEEECCEecc
Confidence 3589999987 5888888887666421 11 4677887664
No 315
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=22.66 E-value=68 Score=30.50 Aligned_cols=25 Identities=16% Similarity=0.411 Sum_probs=18.7
Q ss_pred CCcEEEEcCCC--chhHHHHHHHHHHH
Q 048728 55 QLKVIHVAGTK--GKGSTCTFTESILR 79 (536)
Q Consensus 55 ~l~vI~VTGTn--GKTST~~ml~~IL~ 79 (536)
.-.+++|.|-| ||||...+|..++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34589999987 78888888766553
No 316
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=22.61 E-value=1.5e+02 Score=27.92 Aligned_cols=36 Identities=22% Similarity=0.246 Sum_probs=22.8
Q ss_pred HHHHHHHHcCCcccCCCCcEEEEcCCC--chhHHHHHHHHHHH
Q 048728 39 LLSDYLKILDLDVAISQLKVIHVAGTK--GKGSTCTFTESILR 79 (536)
Q Consensus 39 ~~~~~L~~Lg~~~p~~~l~vI~VTGTn--GKTST~~ml~~IL~ 79 (536)
.+..+|+..- ..-..|.|+|.+ ||||+...|...+.
T Consensus 13 ~~~~~l~~~v-----~~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 13 LQAAYLWLAV-----EARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred HHHHHHHHHH-----hCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4455555432 223578888865 78888777776665
No 317
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=22.57 E-value=47 Score=30.89 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=16.0
Q ss_pred EEcCCCchhHHHHHHHHHHH
Q 048728 60 HVAGTKGKGSTCTFTESILR 79 (536)
Q Consensus 60 ~VTGTnGKTST~~ml~~IL~ 79 (536)
||+|+ ||||+..+|+.-|.
T Consensus 2 GVsG~-GKStvg~~lA~~lg 20 (161)
T COG3265 2 GVSGS-GKSTVGSALAERLG 20 (161)
T ss_pred CCCcc-CHHHHHHHHHHHcC
Confidence 56775 99999999998885
No 318
>PRK07429 phosphoribulokinase; Provisional
Probab=22.56 E-value=80 Score=33.07 Aligned_cols=27 Identities=22% Similarity=0.178 Sum_probs=22.6
Q ss_pred CCcEEEEcCC--CchhHHHHHHHHHHHhC
Q 048728 55 QLKVIHVAGT--KGKGSTCTFTESILRNC 81 (536)
Q Consensus 55 ~l~vI~VTGT--nGKTST~~ml~~IL~~~ 81 (536)
+.-+|+|+|. .||||++..|..+|...
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll~~~ 35 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLLGEE 35 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHhccC
Confidence 4459999995 68999999999999754
No 319
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=22.56 E-value=1.1e+02 Score=34.51 Aligned_cols=32 Identities=28% Similarity=0.160 Sum_probs=27.5
Q ss_pred CCcEEEEcCCC------chhHHHHHHHHHHH-hCCCCEE
Q 048728 55 QLKVIHVAGTK------GKGSTCTFTESILR-NCGFRTG 86 (536)
Q Consensus 55 ~l~vI~VTGTn------GKTST~~ml~~IL~-~~G~k~g 86 (536)
+-+.|-||+.+ |||||+-=|...|. ..|+++.
T Consensus 67 ~gklIlVTaitPTP~GEGKtTttIGL~~aL~~~lgk~~~ 105 (625)
T PTZ00386 67 NGKYVVVAGMNPTPLGEGKSTTTIGLAQSLGAHLHRKTF 105 (625)
T ss_pred CCcEEEEeecCCCCCCCCccchhhhhHHHHHHHhCcceE
Confidence 34789999976 99999999999999 6898864
No 320
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=22.51 E-value=65 Score=31.38 Aligned_cols=38 Identities=13% Similarity=0.262 Sum_probs=26.4
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecC
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDIS 108 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is 108 (536)
-.+++|+|-| ||||...+|..++... .-+|.++|.++.
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---------------~G~i~~~g~~i~ 74 (233)
T PRK11629 35 GEMMAIVGSSGSGKSTLLHLLGGLDTPT---------------SGDVIFNGQPMS 74 (233)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCC---------------ceEEEECCEEcC
Confidence 3589999987 6888888887665321 115778888764
No 321
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=22.47 E-value=70 Score=30.73 Aligned_cols=38 Identities=24% Similarity=0.292 Sum_probs=26.1
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecC
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDIS 108 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is 108 (536)
-.+++|.|-| ||||...+|..++... +. .|.++|.+++
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--------~G-------~i~~~g~~~~ 67 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGELRPT--------SG-------TAYINGYSIR 67 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCC--------Cc-------EEEECCEecc
Confidence 3489999987 7888888877665421 11 4677887764
No 322
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=22.44 E-value=68 Score=31.30 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=24.9
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecC
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDIS 108 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is 108 (536)
-.+++|.|.| ||||...+|..++... +. .|.++|.++.
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--------~G-------~i~~~g~~~~ 50 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLISGLAQPT--------SG-------GVILEGKQIT 50 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC--------Cc-------eEEECCEECC
Confidence 3589999987 5777777776555321 11 5778887664
No 323
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=22.30 E-value=86 Score=30.82 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=20.3
Q ss_pred CcEEEEcCC--CchhHHHHHHHHHHH
Q 048728 56 LKVIHVAGT--KGKGSTCTFTESILR 79 (536)
Q Consensus 56 l~vI~VTGT--nGKTST~~ml~~IL~ 79 (536)
..+|+|.|+ .||||.+.+|+.=|.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 468999997 689999999988764
No 324
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=22.24 E-value=84 Score=31.90 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=25.5
Q ss_pred cEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecC
Q 048728 57 KVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDIS 108 (536)
Q Consensus 57 ~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is 108 (536)
.+++|.|-| ||||...+|..++...| +|.++|.++.
T Consensus 31 e~~~IvG~nGsGKSTLl~~L~gl~~~~G----------------~I~i~g~~i~ 68 (275)
T cd03289 31 QRVGLLGRTGSGKSTLLSAFLRLLNTEG----------------DIQIDGVSWN 68 (275)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcCCCc----------------EEEECCEEhh
Confidence 467777754 68888888887775322 5788998764
No 325
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=22.17 E-value=94 Score=31.05 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=17.8
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHH
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILR 79 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~ 79 (536)
=.+++|.|-| ||||...+|..++.
T Consensus 47 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 72 (268)
T PRK14248 47 HAVTALIGPSGCGKSTFLRSINRMND 72 (268)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccc
Confidence 3478999876 68888788877653
No 326
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.16 E-value=53 Score=40.88 Aligned_cols=53 Identities=25% Similarity=0.288 Sum_probs=39.7
Q ss_pred HHHHHHHcCCc-ccCCCCcEEEEcCCCchhHHHHHHHHHHHh-CCCCEEEEeCCccccccceeeeCCeecCH
Q 048728 40 LSDYLKILDLD-VAISQLKVIHVAGTKGKGSTCTFTESILRN-CGFRTGLFTSPHLIDVRERFRLDGDDISE 109 (536)
Q Consensus 40 ~~~~L~~Lg~~-~p~~~l~vI~VTGTnGKTST~~ml~~IL~~-~G~k~g~~tSphl~~~~Eri~inG~~is~ 109 (536)
....|+-+.+. .|.+++-+||=||+ ||+|...-|-.+... .| +|.|||..|++
T Consensus 1152 lp~VLk~is~~I~p~eKVGIVGRTGa-GKSSL~~aLFRl~e~~~G----------------~I~IDgvdI~~ 1206 (1381)
T KOG0054|consen 1152 LPLVLKGISFTIKPGEKVGIVGRTGA-GKSSLILALFRLVEPAEG----------------EILIDGVDISK 1206 (1381)
T ss_pred CcchhcCceEEEcCCceEEEeCCCCC-CHHHHHHHHHHhcCccCC----------------eEEEcCeeccc
Confidence 34566655554 67788777777774 999999888888873 34 69999998875
No 327
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=22.11 E-value=1.1e+02 Score=28.90 Aligned_cols=30 Identities=33% Similarity=0.429 Sum_probs=21.1
Q ss_pred EEEEcCCCchhHHHHHHHHHHHhCC--CCEEE
Q 048728 58 VIHVAGTKGKGSTCTFTESILRNCG--FRTGL 87 (536)
Q Consensus 58 vI~VTGTnGKTST~~ml~~IL~~~G--~k~g~ 87 (536)
.|+|=--+|||.|++.+-..||++| +||.+
T Consensus 5 ~i~vytG~GKGKTTAAlGlalRA~G~G~rV~i 36 (172)
T PF02572_consen 5 LIQVYTGDGKGKTTAALGLALRAAGHGMRVLI 36 (172)
T ss_dssp -EEEEESSSS-HHHHHHHHHHHHHCTT--EEE
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhCCCEEEE
Confidence 4666666899999999999999965 55543
No 328
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=22.09 E-value=83 Score=31.95 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=17.6
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHH
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESIL 78 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL 78 (536)
-.+++|.|-| ||||...+|..++
T Consensus 65 Ge~~~l~G~nGsGKSTLl~~L~Gl~ 89 (286)
T PRK14275 65 KYVTAIIGPSGCGKSTFLRAINRMN 89 (286)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 3589999987 6888888887654
No 329
>PRK06547 hypothetical protein; Provisional
Probab=21.91 E-value=90 Score=29.31 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=18.6
Q ss_pred CCcEEEEcCC--CchhHHHHHHHHHH
Q 048728 55 QLKVIHVAGT--KGKGSTCTFTESIL 78 (536)
Q Consensus 55 ~l~vI~VTGT--nGKTST~~ml~~IL 78 (536)
...+|+|+|. .||||++..|...+
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999885 46999998888764
No 330
>PRK10908 cell division protein FtsE; Provisional
Probab=21.88 E-value=65 Score=31.09 Aligned_cols=39 Identities=21% Similarity=0.338 Sum_probs=26.5
Q ss_pred CCcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecC
Q 048728 55 QLKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDIS 108 (536)
Q Consensus 55 ~l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is 108 (536)
+=.+++|.|-| ||||...+|.-++... .-+|.++|.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---------------~G~i~~~g~~i~ 67 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIERPS---------------AGKIWFSGHDIT 67 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------ceEEEECCEEcc
Confidence 34589999987 7888888877655321 115778887664
No 331
>PRK08939 primosomal protein DnaI; Reviewed
Probab=21.81 E-value=1.4e+02 Score=30.90 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=26.4
Q ss_pred cEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 57 KVIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
+-+-+.|. .|||..+..+..-|...|+++.+++.|
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~ 193 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFP 193 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH
Confidence 34555553 389999988888888889988777666
No 332
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=21.65 E-value=73 Score=29.87 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=17.9
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHH
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILR 79 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~ 79 (536)
-.+++|.|-| ||||...+|..++.
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3589999987 58888777776554
No 333
>PRK10536 hypothetical protein; Provisional
Probab=21.52 E-value=1e+02 Score=31.29 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=22.3
Q ss_pred cEEEEcCCC--chhHHHHHHHH-HHHhCCCCEEEEeCCc
Q 048728 57 KVIHVAGTK--GKGSTCTFTES-ILRNCGFRTGLFTSPH 92 (536)
Q Consensus 57 ~vI~VTGTn--GKTST~~ml~~-IL~~~G~k~g~~tSph 92 (536)
.+|-++|-- |||..+..+.. .|....++..+++.|.
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~ 113 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPV 113 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCC
Confidence 366666643 67777665554 4434457777777773
No 334
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=21.45 E-value=1.1e+02 Score=33.70 Aligned_cols=27 Identities=30% Similarity=0.140 Sum_probs=23.7
Q ss_pred CCcEEEEcCCC---chhHHHHHHHHHHHhC
Q 048728 55 QLKVIHVAGTK---GKGSTCTFTESILRNC 81 (536)
Q Consensus 55 ~l~vI~VTGTn---GKTST~~ml~~IL~~~ 81 (536)
+++.|-||||+ |||+++..|.+.|+..
T Consensus 237 ~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~ 266 (476)
T PRK06278 237 KPKGIILLATGSESGKTFLTTSIAGKLRGK 266 (476)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 46789999985 9999999999999974
No 335
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=21.44 E-value=1.3e+02 Score=33.66 Aligned_cols=41 Identities=24% Similarity=0.397 Sum_probs=29.8
Q ss_pred HHHHHHHHHHcC-Cc---ccCCCCcEEEEcC--CCchhHHHHHHHHH
Q 048728 37 FELLSDYLKILD-LD---VAISQLKVIHVAG--TKGKGSTCTFTESI 77 (536)
Q Consensus 37 l~~~~~~L~~Lg-~~---~p~~~l~vI~VTG--TnGKTST~~ml~~I 77 (536)
++.-.+.|+.|. |+ +-++.+|-|.|-| +.||||+..|++..
T Consensus 285 IDMYSEVLD~Ls~YD~sYnt~DhLPRVVVVGDQSaGKTSVLEmiAqA 331 (980)
T KOG0447|consen 285 IDMYSEVLDVLSDYDASYNTQDHLPRVVVVGDQSAGKTSVLEMIAQA 331 (980)
T ss_pred HHHHHHHHHHHhcccccccccccCceEEEEcCccccchHHHHHHHHh
Confidence 344456676664 43 5667888888877 89999999999864
No 336
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=21.37 E-value=78 Score=31.39 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=19.0
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHH
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILR 79 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~ 79 (536)
-.+++|.|-| ||||...+|..++.
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~laGl~~ 55 (258)
T PRK14241 30 RSVTAFIGPSGCGKSTVLRTLNRMHE 55 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3589999976 68898888887764
No 337
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=21.18 E-value=96 Score=29.96 Aligned_cols=23 Identities=13% Similarity=0.236 Sum_probs=18.3
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHH
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESIL 78 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL 78 (536)
-.+++|.|-| ||||...+|..++
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3589999987 6888888888776
No 338
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=21.14 E-value=49 Score=38.40 Aligned_cols=91 Identities=15% Similarity=0.191 Sum_probs=47.8
Q ss_pred cEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHHHHHH----------Hhhh
Q 048728 57 KVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFWWCY----------DRLK 124 (536)
Q Consensus 57 ~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~----------~~l~ 124 (536)
..|+|.|-+ ||||...++..+++-. .-+|.+||.++.+-+...+...|. ..+.
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~gly~p~---------------~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~ 564 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLGLYKPQ---------------QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIR 564 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC---------------CceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHH
Confidence 367888765 6999888887666531 116888888765543322211100 0111
Q ss_pred hhhc---CCCCCCCHHHHHHHHHHHHHhh---CCCcEEEEeccc
Q 048728 125 EKAT---EDIPMPSYFRFLALLAFKIFTA---EQIDVAILEVGL 162 (536)
Q Consensus 125 ~~~~---~~~~~p~~fe~lt~la~~~f~~---~~~d~aVlEvg~ 162 (536)
++.+ ++.+.+...+.....+.+.|.. .+.|.-|-|.|.
T Consensus 565 eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~ 608 (709)
T COG2274 565 ENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGA 608 (709)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCC
Confidence 1111 1112223444444444455543 567888888886
No 339
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=21.03 E-value=75 Score=31.23 Aligned_cols=44 Identities=20% Similarity=0.339 Sum_probs=25.8
Q ss_pred CCcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecC
Q 048728 55 QLKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDIS 108 (536)
Q Consensus 55 ~l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is 108 (536)
+-.+++|.|-| ||||...+|.-++... |. ....-+|.++|.++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---------~~-~~~~G~i~~~g~~~~ 71 (247)
T TIGR00972 26 KNQVTALIGPSGCGKSTLLRSLNRMNDLV---------PG-VRIEGKVLFDGQDIY 71 (247)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCC---------cC-CCCceEEEECCEEcc
Confidence 34589999987 5777666666554321 00 001226788888764
No 340
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=21.02 E-value=73 Score=30.25 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=18.0
Q ss_pred CCcEEEEcCCC--chhHHHHHHHHHH
Q 048728 55 QLKVIHVAGTK--GKGSTCTFTESIL 78 (536)
Q Consensus 55 ~l~vI~VTGTn--GKTST~~ml~~IL 78 (536)
+-.+++|.|-| ||||...+|.-++
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999987 7888878776554
No 341
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=20.91 E-value=73 Score=30.15 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=21.8
Q ss_pred CcEEEEcC--CCchhHHHHHHHHHHHh
Q 048728 56 LKVIHVAG--TKGKGSTCTFTESILRN 80 (536)
Q Consensus 56 l~vI~VTG--TnGKTST~~ml~~IL~~ 80 (536)
.++|.|.| |.||||.+.-|+.+++.
T Consensus 8 ~K~VailG~ESsGKStLv~kLA~~fnt 34 (187)
T COG3172 8 VKTVAILGGESSGKSTLVNKLANIFNT 34 (187)
T ss_pred heeeeeecCcccChHHHHHHHHHHhCC
Confidence 47899998 79999999999999863
No 342
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=20.70 E-value=1.5e+02 Score=27.75 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=25.4
Q ss_pred EEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeCCc
Q 048728 59 IHVAGT--KGKGSTCTFTESILRNCGFRTGLFTSPH 92 (536)
Q Consensus 59 I~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tSph 92 (536)
|.|||- -||||...-+-..|+..|++++=|-++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf~t~e 37 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGLPVGGFYTEE 37 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCGGEEEEEEEE
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCCccceEEeec
Confidence 567875 5899999999999988888875454453
No 343
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=20.59 E-value=1.1e+02 Score=30.34 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=28.5
Q ss_pred CcEEEEcC--CCchhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 56 LKVIHVAG--TKGKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 56 l~vI~VTG--TnGKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
++.|-+|| ..||||-+.=|+.+|++.+.++...++
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 35688888 789999999999999998887754443
No 344
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=20.58 E-value=1.5e+02 Score=36.39 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHcCCcccCCCCcEEEEcCCCchhHHH-HHHHHHHHhCCCCEEEEeCC
Q 048728 36 RFELLSDYLKILDLDVAISQLKVIHVAGTKGKGSTC-TFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 36 ~l~~~~~~L~~Lg~~~p~~~l~vI~VTGTnGKTST~-~ml~~IL~~~G~k~g~~tSp 91 (536)
..+-+.++.+++. +...+.-+++=||| |||-|+ .++..+++..+.+..+|..+
T Consensus 418 Q~~AI~ai~~a~~--~g~r~~Ll~maTGS-GKT~tai~li~~L~~~~~~~rVLfLvD 471 (1123)
T PRK11448 418 QEDAIQAVEKAIV--EGQREILLAMATGT-GKTRTAIALMYRLLKAKRFRRILFLVD 471 (1123)
T ss_pred HHHHHHHHHHHHH--hccCCeEEEeCCCC-CHHHHHHHHHHHHHhcCccCeEEEEec
Confidence 3445555565553 22234456677776 999664 56677777665666677666
No 345
>PRK09183 transposase/IS protein; Provisional
Probab=20.58 E-value=1.3e+02 Score=30.09 Aligned_cols=34 Identities=18% Similarity=0.140 Sum_probs=24.6
Q ss_pred EEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 58 VIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 58 vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
.+.+.|- .|||+.+..+...+...|+++.+++.+
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~ 139 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAA 139 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHH
Confidence 4556664 489999998888877789887655544
No 346
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.54 E-value=83 Score=30.56 Aligned_cols=38 Identities=18% Similarity=0.347 Sum_probs=26.2
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecC
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDIS 108 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is 108 (536)
-.+++|.|-| ||||...+|..++... .-+|.++|.++.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---------------~G~i~~~g~~~~ 70 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGLERPT---------------SGSVLVDGTDLT 70 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC---------------CceEEECCEEcc
Confidence 3588899876 6888888887666421 125778888764
No 347
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.38 E-value=95 Score=30.60 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=18.1
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHH
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILR 79 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~ 79 (536)
-.+++|.|-| ||||...+|..++.
T Consensus 31 Ge~~~I~G~nGsGKSTLl~~i~G~~~ 56 (251)
T PRK14244 31 REVTAFIGPSGCGKSTFLRCFNRMND 56 (251)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3588999986 68888888776653
No 348
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=20.36 E-value=76 Score=30.98 Aligned_cols=25 Identities=12% Similarity=0.260 Sum_probs=18.2
Q ss_pred CCcEEEEcCCC--chhHHHHHHHHHHH
Q 048728 55 QLKVIHVAGTK--GKGSTCTFTESILR 79 (536)
Q Consensus 55 ~l~vI~VTGTn--GKTST~~ml~~IL~ 79 (536)
+-.+++|.|-| ||||...+|..++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 34589999987 68887777776553
No 349
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.26 E-value=78 Score=31.70 Aligned_cols=39 Identities=13% Similarity=0.182 Sum_probs=26.2
Q ss_pred CCcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecC
Q 048728 55 QLKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDIS 108 (536)
Q Consensus 55 ~l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is 108 (536)
+-.+++|.|-| ||||...+|..++... .-+|.++|.+++
T Consensus 34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---------------~G~i~~~g~~~~ 74 (269)
T PRK13648 34 KGQWTSIVGHNGSGKSTIAKLMIGIEKVK---------------SGEIFYNNQAIT 74 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC---------------ceEEEECCEECC
Confidence 34589999987 5888777777665321 115778887764
No 350
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=20.24 E-value=3.2e+02 Score=27.08 Aligned_cols=83 Identities=23% Similarity=0.272 Sum_probs=45.3
Q ss_pred ceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCCCHHHHHHHHHHHHHhhCCCcEEEEecccCCcccccccccCC--
Q 048728 98 ERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMPSYFRFLALLAFKIFTAEQIDVAILEVGLGGRFDATNVVQKP-- 175 (536)
Q Consensus 98 Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p~~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D~tn~i~~P-- 175 (536)
|+++-+..++....|+....+..+..+.. .| ....+|.-......|+|||.|- ++|+=.-|
T Consensus 35 ~~~~~~~~~~p~~~ft~~yne~~~~ykre---------lF-----s~i~~~~gk~~K~~vLEvgcGt---G~Nfkfy~~~ 97 (252)
T KOG4300|consen 35 ESRQKSDLLIPNSNFTSIYNEIADSYKRE---------LF-----SGIYYFLGKSGKGDVLEVGCGT---GANFKFYPWK 97 (252)
T ss_pred HhcCccccccchhHHHHHHHHHHHHHHHH---------HH-----hhhHHHhcccCccceEEecccC---CCCcccccCC
Confidence 34556667777777777665555544321 11 1123566677888999999862 34442223
Q ss_pred cEEEEcCCCchhHhhhCCCHHHHHHHHH
Q 048728 176 VVCGISSLGYDHMEILGNTLGEIAGEKA 203 (536)
Q Consensus 176 ~vaVITnI~~DHld~lG~tle~ia~~Ka 203 (536)
-++-+|-|.+. ..+++|+..++
T Consensus 98 p~~svt~lDpn------~~mee~~~ks~ 119 (252)
T KOG4300|consen 98 PINSVTCLDPN------EKMEEIADKSA 119 (252)
T ss_pred CCceEEEeCCc------HHHHHHHHHHH
Confidence 23344444433 25666665444
No 351
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=20.22 E-value=97 Score=30.05 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=17.1
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHH
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESIL 78 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL 78 (536)
-.+++|+|.| ||||...+|..++
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 33 GEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 3589999987 6887777776654
No 352
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=20.17 E-value=93 Score=29.76 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=17.8
Q ss_pred cEEEEcCC--CchhHHHHHHHHHH
Q 048728 57 KVIHVAGT--KGKGSTCTFTESIL 78 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~IL 78 (536)
.+|+|||. .||||++.++...+
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~ 25 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQK 25 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh
Confidence 47999995 68999999988654
No 353
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=20.16 E-value=87 Score=29.81 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=17.0
Q ss_pred cEEEEcC--CCchhHHHHHHHH
Q 048728 57 KVIHVAG--TKGKGSTCTFTES 76 (536)
Q Consensus 57 ~vI~VTG--TnGKTST~~ml~~ 76 (536)
.+|+||| -.||||++.++..
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~ 24 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE 24 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999 4789999998876
No 354
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=20.14 E-value=87 Score=30.48 Aligned_cols=39 Identities=21% Similarity=0.379 Sum_probs=25.3
Q ss_pred CCcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecC
Q 048728 55 QLKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDIS 108 (536)
Q Consensus 55 ~l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is 108 (536)
+-.+++|.|-| ||||...+|..++... + -+|.++|.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--------~-------G~i~~~g~~~~ 67 (237)
T cd03252 27 PGEVVGIVGRSGSGKSTLTKLIQRFYVPE--------N-------GRVLVDGHDLA 67 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCC--------C-------CEEEECCeehH
Confidence 34589999987 5777777776655321 1 15778887653
Done!