Query 048728
Match_columns 536
No_of_seqs 341 out of 2453
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 21:49:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048728.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048728hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nrs_A Dihydrofolate:folylpoly 100.0 1.3E-72 4.6E-77 604.8 42.5 396 8-535 13-436 (437)
2 2vos_A Folylpolyglutamate synt 100.0 2E-71 6.7E-76 603.1 45.8 419 9-536 25-484 (487)
3 1jbw_A Folylpolyglutamate synt 100.0 2.8E-69 9.5E-74 577.6 43.8 403 9-535 1-424 (428)
4 1o5z_A Folylpolyglutamate synt 100.0 8.5E-69 2.9E-73 576.1 42.5 402 7-535 11-432 (442)
5 1w78_A FOLC bifunctional prote 100.0 2.9E-65 1E-69 545.5 45.6 394 8-535 10-415 (422)
6 1e8c_A UDP-N-acetylmuramoylala 100.0 3.9E-51 1.3E-55 445.2 31.1 348 37-526 86-468 (498)
7 2wtz_A UDP-N-acetylmuramoyl-L- 100.0 3E-50 1E-54 441.8 33.3 352 38-529 125-509 (535)
8 1gg4_A UDP-N-acetylmuramoylala 100.0 1.2E-46 4.1E-51 405.2 26.6 325 36-529 79-440 (452)
9 2am1_A SP protein, UDP-N-acety 100.0 4.4E-46 1.5E-50 401.0 22.8 331 37-529 80-446 (454)
10 1p3d_A UDP-N-acetylmuramate--a 100.0 4.5E-44 1.5E-48 387.4 33.6 327 56-532 118-470 (475)
11 1j6u_A UDP-N-acetylmuramate-al 100.0 2.3E-43 8E-48 381.2 29.6 317 55-532 113-451 (469)
12 2f00_A UDP-N-acetylmuramate--L 100.0 1.6E-43 5.5E-48 384.6 28.0 327 56-533 119-477 (491)
13 2x5o_A UDP-N-acetylmuramoylala 100.0 1.6E-43 5.4E-48 379.6 20.2 295 55-530 103-422 (439)
14 4hv4_A UDP-N-acetylmuramate--L 100.0 1.7E-41 5.8E-46 368.9 33.5 325 56-531 122-478 (494)
15 3lk7_A UDP-N-acetylmuramoylala 100.0 1.2E-40 4.2E-45 358.3 30.4 291 55-522 111-423 (451)
16 3hn7_A UDP-N-acetylmuramate-L- 100.0 3.4E-40 1.2E-44 361.0 32.5 337 54-531 120-513 (524)
17 3eag_A UDP-N-acetylmuramate:L- 100.0 1.5E-28 5.1E-33 253.5 17.3 193 55-307 107-326 (326)
18 3mvn_A UDP-N-acetylmuramate:L- 99.6 8.6E-15 3E-19 135.8 13.3 139 293-529 12-155 (163)
19 3fwy_A Light-independent proto 92.2 0.13 4.4E-06 52.0 5.1 36 54-89 46-83 (314)
20 3bfv_A CAPA1, CAPB2, membrane 92.0 0.22 7.4E-06 49.0 6.4 51 38-88 64-117 (271)
21 3of5_A Dethiobiotin synthetase 90.8 0.22 7.6E-06 47.7 4.9 36 54-89 2-40 (228)
22 3cio_A ETK, tyrosine-protein k 90.7 0.27 9.1E-06 49.1 5.7 37 53-89 101-140 (299)
23 3la6_A Tyrosine-protein kinase 90.2 0.31 1.1E-05 48.4 5.5 37 52-88 88-127 (286)
24 1xjc_A MOBB protein homolog; s 89.9 0.35 1.2E-05 44.3 5.2 37 55-91 3-41 (169)
25 4dzz_A Plasmid partitioning pr 89.8 0.32 1.1E-05 44.6 5.0 34 56-89 1-37 (206)
26 1byi_A Dethiobiotin synthase; 89.6 0.28 9.4E-06 46.0 4.5 32 57-88 2-36 (224)
27 3fgn_A Dethiobiotin synthetase 88.8 0.36 1.2E-05 47.0 4.8 36 54-89 24-62 (251)
28 1g3q_A MIND ATPase, cell divis 88.3 0.44 1.5E-05 44.9 4.8 33 57-89 3-38 (237)
29 1wcv_1 SOJ, segregation protei 87.8 0.49 1.7E-05 45.6 4.9 34 55-88 5-41 (257)
30 3ez2_A Plasmid partition prote 86.5 1.2 4.2E-05 45.8 7.4 53 36-88 85-149 (398)
31 3qxc_A Dethiobiotin synthetase 85.5 0.77 2.6E-05 44.5 4.9 35 55-89 20-57 (242)
32 1hyq_A MIND, cell division inh 85.4 0.67 2.3E-05 44.4 4.5 32 57-88 3-37 (263)
33 3ea0_A ATPase, para family; al 85.1 0.72 2.4E-05 43.5 4.4 35 55-89 3-41 (245)
34 2ph1_A Nucleotide-binding prot 85.1 0.84 2.9E-05 44.1 5.0 33 56-88 18-53 (262)
35 3q9l_A Septum site-determining 85.1 0.81 2.8E-05 43.6 4.8 32 57-88 3-37 (260)
36 3k9g_A PF-32 protein; ssgcid, 84.6 0.77 2.6E-05 44.3 4.5 34 54-88 25-61 (267)
37 1cp2_A CP2, nitrogenase iron p 83.4 1 3.6E-05 43.2 4.8 32 57-88 2-35 (269)
38 2oze_A ORF delta'; para, walke 83.2 2 6.7E-05 42.0 6.8 45 36-88 22-71 (298)
39 3end_A Light-independent proto 83.1 1.1 3.9E-05 44.1 5.1 35 54-88 39-75 (307)
40 3fkq_A NTRC-like two-domain pr 83.0 1.5 5.3E-05 44.8 6.2 36 53-88 140-178 (373)
41 3ez9_A Para; DNA binding, wing 82.9 1.2 4E-05 46.1 5.3 53 36-88 88-152 (403)
42 3cwq_A Para family chromosome 82.8 1 3.4E-05 42.1 4.3 30 58-88 2-34 (209)
43 2afh_E Nitrogenase iron protei 82.8 1.2 4.1E-05 43.5 5.1 33 56-88 2-36 (289)
44 3dm5_A SRP54, signal recogniti 82.7 6.4 0.00022 41.4 10.9 36 56-91 100-137 (443)
45 2xj4_A MIPZ; replication, cell 82.3 1.2 4.2E-05 43.6 4.9 32 57-88 5-39 (286)
46 2px0_A Flagellar biosynthesis 80.7 5.6 0.00019 39.3 9.2 36 55-90 104-142 (296)
47 1zu4_A FTSY; GTPase, signal re 80.4 2.9 0.0001 42.0 7.0 36 55-90 104-141 (320)
48 2f1r_A Molybdopterin-guanine d 80.3 1.5 5E-05 40.0 4.4 32 56-87 2-35 (171)
49 1vma_A Cell division protein F 79.6 3.3 0.00011 41.3 7.0 35 55-89 103-139 (306)
50 2obn_A Hypothetical protein; s 79.0 1.8 6.1E-05 44.3 4.9 36 56-91 152-190 (349)
51 2g0t_A Conserved hypothetical 76.9 2.4 8.3E-05 43.3 5.1 37 55-91 168-207 (350)
52 1rz3_A Hypothetical protein rb 76.7 4.2 0.00014 37.4 6.4 37 54-90 20-58 (201)
53 3pg5_A Uncharacterized protein 76.7 1.4 4.9E-05 44.8 3.4 33 56-88 1-36 (361)
54 3zq6_A Putative arsenical pump 76.6 3 0.0001 41.7 5.8 39 52-90 9-50 (324)
55 3kl4_A SRP54, signal recogniti 73.3 3.1 0.00011 43.7 5.0 36 56-91 97-134 (433)
56 1np6_A Molybdopterin-guanine d 73.3 4 0.00014 37.1 5.2 36 55-90 5-42 (174)
57 3c8u_A Fructokinase; YP_612366 73.1 7.9 0.00027 35.6 7.3 34 55-88 21-56 (208)
58 3e70_C DPA, signal recognition 69.3 3.2 0.00011 41.9 3.8 35 56-90 129-165 (328)
59 3ug7_A Arsenical pump-driving 68.1 4 0.00014 41.4 4.3 37 54-90 23-62 (349)
60 2woo_A ATPase GET3; tail-ancho 66.6 5.2 0.00018 40.1 4.8 33 58-90 20-55 (329)
61 2z0h_A DTMP kinase, thymidylat 64.7 7.7 0.00026 34.7 5.2 34 58-91 2-37 (197)
62 1a7j_A Phosphoribulokinase; tr 63.3 5.9 0.0002 39.0 4.4 36 55-90 4-41 (290)
63 2i3b_A HCR-ntpase, human cance 63.0 8.8 0.0003 35.2 5.3 29 58-86 3-33 (189)
64 2yvu_A Probable adenylyl-sulfa 62.0 10 0.00035 33.9 5.5 33 56-88 13-47 (186)
65 3kjh_A CO dehydrogenase/acetyl 61.5 3.5 0.00012 38.5 2.3 27 62-88 8-34 (254)
66 1nks_A Adenylate kinase; therm 61.3 7.6 0.00026 34.5 4.4 32 57-88 2-35 (194)
67 2vo1_A CTP synthase 1; pyrimid 60.6 9 0.00031 37.6 4.9 34 54-87 21-58 (295)
68 3p32_A Probable GTPase RV1496/ 60.4 15 0.0005 37.1 6.9 48 40-89 65-114 (355)
69 3b9q_A Chloroplast SRP recepto 59.1 9.8 0.00034 37.7 5.2 34 56-89 100-135 (302)
70 2p67_A LAO/AO transport system 58.6 13 0.00044 37.3 6.0 47 41-89 43-91 (341)
71 2ffh_A Protein (FFH); SRP54, s 58.1 6.4 0.00022 41.2 3.7 35 56-90 98-134 (425)
72 2v3c_C SRP54, signal recogniti 57.9 4.3 0.00015 42.6 2.4 34 57-90 100-135 (432)
73 3tqc_A Pantothenate kinase; bi 57.4 47 0.0016 33.2 9.9 36 54-89 90-129 (321)
74 2xxa_A Signal recognition part 57.3 11 0.00037 39.5 5.3 36 55-90 99-137 (433)
75 2pez_A Bifunctional 3'-phospho 57.2 11 0.00039 33.4 4.9 30 57-86 6-37 (179)
76 2c5m_A CTP synthase; cytidine 56.3 9 0.00031 37.3 4.0 34 54-87 21-58 (294)
77 3iqw_A Tail-anchored protein t 55.9 8.8 0.0003 38.7 4.2 29 62-90 24-52 (334)
78 3io3_A DEHA2D07832P; chaperone 55.8 9.8 0.00034 38.6 4.6 34 57-90 19-56 (348)
79 1nn5_A Similar to deoxythymidy 55.7 14 0.0005 33.4 5.4 35 57-91 10-46 (215)
80 3pzx_A Formate--tetrahydrofola 55.5 16 0.00055 38.9 6.1 35 54-88 55-95 (557)
81 1j8m_F SRP54, signal recogniti 54.5 12 0.00043 36.8 5.0 36 56-91 98-135 (297)
82 3hjn_A DTMP kinase, thymidylat 54.3 6.3 0.00021 36.4 2.6 33 59-91 3-37 (197)
83 2og2_A Putative signal recogni 54.3 13 0.00044 37.9 5.2 34 56-89 157-192 (359)
84 2wwf_A Thymidilate kinase, put 53.6 17 0.00058 32.9 5.5 33 56-88 10-44 (212)
85 2woj_A ATPase GET3; tail-ancho 53.3 14 0.00048 37.4 5.3 34 57-90 18-56 (354)
86 1rj9_A FTSY, signal recognitio 52.8 17 0.00059 36.0 5.7 34 56-89 102-137 (304)
87 2yhs_A FTSY, cell division pro 52.5 25 0.00084 37.6 7.1 33 56-88 293-327 (503)
88 2j37_W Signal recognition part 50.9 23 0.00077 37.9 6.6 36 55-90 100-137 (504)
89 4ehx_A Tetraacyldisaccharide 4 48.9 33 0.0011 34.2 7.1 51 37-89 16-71 (315)
90 2jeo_A Uridine-cytidine kinase 48.5 10 0.00036 35.8 3.2 24 55-78 24-49 (245)
91 1ls1_A Signal recognition part 47.3 19 0.00064 35.4 5.0 36 55-90 97-134 (295)
92 2pbr_A DTMP kinase, thymidylat 46.9 24 0.00084 31.1 5.4 30 58-87 2-33 (195)
93 1pjq_A CYSG, siroheme synthase 46.3 11 0.00037 39.7 3.2 22 58-80 123-145 (457)
94 2qm8_A GTPase/ATPase; G protei 46.0 31 0.0011 34.5 6.5 47 41-89 42-90 (337)
95 2if2_A Dephospho-COA kinase; a 45.9 9.3 0.00032 34.7 2.3 20 57-76 2-23 (204)
96 4tmk_A Protein (thymidylate ki 45.8 14 0.00047 34.6 3.5 35 57-91 4-41 (213)
97 3ec2_A DNA replication protein 44.5 28 0.00095 30.7 5.3 47 37-87 23-72 (180)
98 1uf9_A TT1252 protein; P-loop, 44.2 12 0.00041 33.6 2.8 27 51-77 3-31 (203)
99 1zuh_A Shikimate kinase; alpha 43.9 15 0.0005 32.2 3.3 25 54-78 5-31 (168)
100 3asz_A Uridine kinase; cytidin 43.8 13 0.00045 33.8 3.0 25 55-79 5-31 (211)
101 3lv8_A DTMP kinase, thymidylat 43.7 27 0.00092 33.2 5.3 36 56-91 27-65 (236)
102 2w0m_A SSO2452; RECA, SSPF, un 42.1 25 0.00085 32.0 4.7 34 57-90 24-59 (235)
103 1odf_A YGR205W, hypothetical 3 41.9 28 0.00094 34.2 5.2 29 54-82 29-59 (290)
104 3upu_A ATP-dependent DNA helic 41.6 20 0.00067 37.4 4.3 35 56-91 48-82 (459)
105 1ihu_A Arsenical pump-driving 41.5 23 0.00078 38.2 5.0 35 56-90 8-44 (589)
106 3nva_A CTP synthase; rossman f 41.2 26 0.00089 37.6 5.1 33 56-88 3-39 (535)
107 3a00_A Guanylate kinase, GMP k 40.7 9.3 0.00032 34.4 1.4 23 57-79 2-26 (186)
108 1sq5_A Pantothenate kinase; P- 40.4 25 0.00084 34.6 4.6 26 54-79 78-105 (308)
109 4a0g_A Adenosylmethionine-8-am 40.1 20 0.00067 40.8 4.3 35 55-89 33-75 (831)
110 1xx6_A Thymidine kinase; NESG, 39.6 39 0.0013 30.9 5.6 35 55-89 7-43 (191)
111 3a4m_A L-seryl-tRNA(SEC) kinas 39.6 33 0.0011 32.7 5.2 31 56-86 4-36 (260)
112 1jjv_A Dephospho-COA kinase; P 39.3 16 0.00053 33.2 2.7 20 57-76 3-24 (206)
113 4edh_A DTMP kinase, thymidylat 39.2 34 0.0012 31.8 5.1 35 57-91 7-43 (213)
114 3tr0_A Guanylate kinase, GMP k 38.8 15 0.00052 33.0 2.6 22 57-78 8-31 (205)
115 3kb2_A SPBC2 prophage-derived 38.5 20 0.00068 31.0 3.3 22 57-78 2-25 (173)
116 3aez_A Pantothenate kinase; tr 38.5 19 0.00064 35.8 3.4 28 54-81 88-117 (312)
117 3e1s_A Exodeoxyribonuclease V, 38.3 20 0.00068 38.9 3.8 34 57-91 205-240 (574)
118 2plr_A DTMP kinase, probable t 38.3 28 0.00097 31.2 4.4 34 57-91 5-40 (213)
119 3ake_A Cytidylate kinase; CMP 38.2 20 0.00068 32.2 3.3 21 58-78 4-26 (208)
120 1uj2_A Uridine-cytidine kinase 38.1 17 0.00058 34.4 2.9 25 55-79 21-47 (252)
121 1gtv_A TMK, thymidylate kinase 37.3 12 0.00043 33.9 1.7 34 58-91 2-37 (214)
122 3igf_A ALL4481 protein; two-do 37.1 17 0.00058 37.2 2.9 29 63-91 11-39 (374)
123 1kht_A Adenylate kinase; phosp 37.1 34 0.0012 30.1 4.6 28 57-84 4-33 (192)
124 1g5t_A COB(I)alamin adenosyltr 36.7 29 0.001 32.2 4.2 33 57-89 29-63 (196)
125 1cke_A CK, MSSA, protein (cyti 35.6 22 0.00077 32.5 3.2 22 57-78 6-29 (227)
126 2kjq_A DNAA-related protein; s 35.4 54 0.0018 28.4 5.6 37 55-91 35-73 (149)
127 2q3l_A Uncharacterized protein 34.7 2E+02 0.0069 24.0 10.2 102 324-504 22-125 (126)
128 2b8t_A Thymidine kinase; deoxy 34.4 43 0.0015 31.5 5.0 34 56-89 12-47 (223)
129 3uie_A Adenylyl-sulfate kinase 33.8 49 0.0017 29.8 5.2 29 56-84 25-55 (200)
130 1ye8_A Protein THEP1, hypothet 33.7 26 0.00089 31.5 3.2 22 58-79 2-25 (178)
131 4eun_A Thermoresistant glucoki 32.8 27 0.00092 31.6 3.2 23 56-78 29-53 (200)
132 1kag_A SKI, shikimate kinase I 32.7 20 0.0007 31.2 2.3 22 57-78 5-28 (173)
133 1yrb_A ATP(GTP)binding protein 32.6 26 0.0009 32.8 3.3 33 56-89 14-48 (262)
134 3lnc_A Guanylate kinase, GMP k 32.2 20 0.00067 33.3 2.2 24 56-79 27-53 (231)
135 1m7g_A Adenylylsulfate kinase; 30.9 41 0.0014 30.6 4.2 32 57-88 26-60 (211)
136 1nij_A Hypothetical protein YJ 30.1 26 0.00089 34.6 2.8 47 55-108 3-51 (318)
137 1cr0_A DNA primase/helicase; R 29.9 48 0.0016 31.9 4.7 34 56-89 35-71 (296)
138 2orw_A Thymidine kinase; TMTK, 29.9 47 0.0016 29.9 4.4 33 57-89 4-38 (184)
139 1vco_A CTP synthetase; tetrame 29.7 45 0.0015 36.0 4.7 34 57-90 13-50 (550)
140 2grj_A Dephospho-COA kinase; T 29.5 32 0.0011 31.4 3.2 25 54-78 10-36 (192)
141 3tau_A Guanylate kinase, GMP k 29.4 35 0.0012 31.2 3.4 24 56-79 8-33 (208)
142 1q3t_A Cytidylate kinase; nucl 29.4 37 0.0013 31.5 3.7 25 54-78 14-40 (236)
143 4hlc_A DTMP kinase, thymidylat 29.3 30 0.001 32.0 2.9 34 57-91 3-38 (205)
144 2j41_A Guanylate kinase; GMP, 29.3 22 0.00076 31.9 2.0 22 57-78 7-30 (207)
145 1e6c_A Shikimate kinase; phosp 29.3 31 0.0011 29.9 2.9 22 57-78 3-26 (173)
146 3syl_A Protein CBBX; photosynt 28.7 72 0.0025 30.5 5.8 25 58-83 72-96 (309)
147 2www_A Methylmalonic aciduria 28.5 61 0.0021 32.4 5.3 36 55-90 73-110 (349)
148 3v9p_A DTMP kinase, thymidylat 28.2 53 0.0018 30.9 4.5 36 56-91 25-66 (227)
149 1ihu_A Arsenical pump-driving 28.2 55 0.0019 35.2 5.2 32 58-89 328-362 (589)
150 2eyu_A Twitching motility prot 28.0 48 0.0017 31.8 4.3 26 55-80 24-51 (261)
151 3lfu_A DNA helicase II; SF1 he 27.9 35 0.0012 36.9 3.6 30 53-83 22-52 (647)
152 3jvv_A Twitching mobility prot 27.9 46 0.0016 33.6 4.3 34 57-90 124-160 (356)
153 2qby_B CDC6 homolog 3, cell di 27.3 53 0.0018 32.5 4.6 43 36-81 28-72 (384)
154 4eaq_A DTMP kinase, thymidylat 27.1 60 0.0021 30.3 4.7 36 55-91 25-62 (229)
155 2r8r_A Sensor protein; KDPD, P 26.6 53 0.0018 31.2 4.1 33 55-87 6-39 (228)
156 2wsm_A Hydrogenase expression/ 26.5 33 0.0011 31.1 2.6 34 55-89 29-64 (221)
157 1y63_A LMAJ004144AAA protein; 26.3 45 0.0015 29.6 3.5 23 55-77 9-33 (184)
158 1knq_A Gluconate kinase; ALFA/ 26.2 50 0.0017 28.8 3.7 25 54-78 6-32 (175)
159 3czq_A Putative polyphosphate 26.1 60 0.0021 32.2 4.6 35 57-91 87-123 (304)
160 2pt5_A Shikimate kinase, SK; a 26.0 42 0.0014 28.9 3.2 21 58-78 2-24 (168)
161 2ghi_A Transport protein; mult 25.7 18 0.00062 34.8 0.7 38 55-108 45-84 (260)
162 1jwy_B Dynamin A GTPase domain 25.4 43 0.0015 32.4 3.4 36 37-74 7-44 (315)
163 1zak_A Adenylate kinase; ATP:A 25.3 32 0.0011 31.6 2.3 21 58-79 10-30 (222)
164 3t61_A Gluconokinase; PSI-biol 25.1 45 0.0015 29.9 3.3 23 56-78 18-42 (202)
165 2iyv_A Shikimate kinase, SK; t 25.0 38 0.0013 29.9 2.7 22 57-78 3-26 (184)
166 1qf9_A UMP/CMP kinase, protein 24.9 48 0.0016 29.0 3.4 22 57-78 7-30 (194)
167 2j9r_A Thymidine kinase; TK1, 24.5 1E+02 0.0035 28.9 5.6 36 54-89 26-63 (214)
168 3do6_A Formate--tetrahydrofola 24.4 93 0.0032 33.0 5.7 34 54-87 41-80 (543)
169 2onk_A Molybdate/tungstate ABC 24.2 41 0.0014 31.9 2.9 39 54-108 23-63 (240)
170 2w58_A DNAI, primosome compone 24.1 1.5E+02 0.0051 26.2 6.7 34 57-90 55-90 (202)
171 2v54_A DTMP kinase, thymidylat 23.7 46 0.0016 29.6 3.1 29 57-87 5-35 (204)
172 1p9r_A General secretion pathw 23.0 62 0.0021 33.5 4.2 34 56-89 167-202 (418)
173 1b0u_A Histidine permease; ABC 22.8 23 0.00079 34.1 0.8 39 55-108 31-71 (262)
174 1ukz_A Uridylate kinase; trans 21.6 52 0.0018 29.4 3.0 25 54-78 13-39 (203)
175 4g1u_C Hemin import ATP-bindin 21.3 33 0.0011 33.1 1.6 39 56-109 37-77 (266)
176 3vaa_A Shikimate kinase, SK; s 21.3 64 0.0022 28.9 3.5 23 56-78 25-49 (199)
177 4i1u_A Dephospho-COA kinase; s 21.3 60 0.0021 30.3 3.4 28 53-84 6-35 (210)
178 2qt1_A Nicotinamide riboside k 20.9 59 0.002 29.3 3.2 25 54-78 19-45 (207)
179 2olj_A Amino acid ABC transpor 20.8 40 0.0014 32.5 2.0 39 55-108 49-89 (263)
180 1znw_A Guanylate kinase, GMP k 20.8 49 0.0017 30.0 2.6 25 55-79 19-45 (207)
181 1ji0_A ABC transporter; ATP bi 20.7 41 0.0014 31.7 2.1 38 56-108 32-71 (240)
182 1g6h_A High-affinity branched- 20.6 41 0.0014 32.1 2.1 38 56-108 33-72 (257)
183 2gks_A Bifunctional SAT/APS ki 20.6 1.5E+02 0.005 31.7 6.7 32 56-87 372-405 (546)
184 2yz2_A Putative ABC transporte 20.5 44 0.0015 32.1 2.3 40 55-109 32-73 (266)
185 2qby_A CDC6 homolog 1, cell di 20.4 63 0.0021 31.7 3.5 25 57-81 46-72 (386)
186 1vht_A Dephospho-COA kinase; s 20.4 54 0.0019 29.8 2.8 20 57-76 5-26 (218)
187 2bdt_A BH3686; alpha-beta prot 20.3 55 0.0019 28.9 2.8 20 57-76 3-24 (189)
188 2ewv_A Twitching motility prot 20.2 78 0.0027 32.0 4.3 27 55-81 135-163 (372)
189 3ber_A Probable ATP-dependent 20.1 1.4E+02 0.0047 27.8 5.8 19 382-400 215-233 (249)
No 1
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=100.00 E-value=1.3e-72 Score=604.81 Aligned_cols=396 Identities=28% Similarity=0.372 Sum_probs=308.7
Q ss_pred cccHHHHHHHHHhchhcccccCCCCCCCCHHHHHHHHHHcCCcccCCCCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEE
Q 048728 8 VTAYEEALDALSSLITKRSRADKSNNGDRFELLSDYLKILDLDVAISQLKVIHVAGTKGKGSTCTFTESILRNCGFRTGL 87 (536)
Q Consensus 8 ~~~y~~a~~~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~p~~~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~ 87 (536)
..+|+|+++||+++..+. .+++|+||+++|++|| +|+.++++|||||||||||||+||++||+++|++||+
T Consensus 13 ~~~~~~~l~~l~~~~~~~-------~~~gL~r~~~ll~~lg--~p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~G~~vg~ 83 (437)
T 3nrs_A 13 TSPLAAWLCYLEHLHSQP-------IELGLERVKQVAERLD--LLKPAPKIFTVAGTNGKGTTCCTLEAILLAAGLRVGV 83 (437)
T ss_dssp TSCHHHHHHHHHTC--------------CCHHHHHHHHHTT--CSCSSSEEEEEECSSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CcCHHHHHHHHHhcCCCC-------CCCCHHHHHHHHHHcC--CccccCCEEEEECCcChHHHHHHHHHHHHHCCCcEEE
Confidence 457999999999886543 6789999999999999 7999999999999999999999999999999999999
Q ss_pred EeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCCCHHHHHHHHHHHHHhhCCCcEEEEecccCCccc
Q 048728 88 FTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMPSYFRFLALLAFKIFTAEQIDVAILEVGLGGRFD 167 (536)
Q Consensus 88 ~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p~~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D 167 (536)
||||||.+|||||+|||++|+++.|.++|.+|..... + ..|++||++|++||.+|.+.++|++|||||+||++|
T Consensus 84 ~tSphl~~~neri~i~g~~i~~~~~~~~~~~v~~~~~-----~-~~~T~fe~~t~~a~~~f~~~~~d~~VlEvGlggrld 157 (437)
T 3nrs_A 84 YSSPHLLRYTERVRIQGQELSEAEHSHSFAQIEAGRG-----D-ISLTYFEFGTLSALQLFKQAKLDVVILEVGLGGRLD 157 (437)
T ss_dssp ECCCCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHT-----T-CCCCHHHHHHHHHHHHHHHTCCSEEEEECSSSSTTS
T ss_pred ECCCCcCCcceEEEECCEECCHHHHHHHHHHHHHhhc-----C-CCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCccc
Confidence 9999999999999999999999999999866654321 1 358999999999999999999999999999999999
Q ss_pred ccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHccccCCCceeccCCChHHHHHHHHHhhcCCCCEEEeCC-CC---
Q 048728 168 ATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKYGVPAFTVPQPEEAMRVLEENASKLDVPLQVVPP-LD--- 243 (536)
Q Consensus 168 ~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k~~~~~v~~~~~~~~~~vl~~~a~~~~~~l~~~~~-~~--- 243 (536)
+||++ +|+++|||||+.||+|+||+|+|+|+++|++||++++++|++.+++. .++.+.+++.+++++.++. ++
T Consensus 158 ~tnii-~p~vaVITnI~~DHld~lG~t~e~ia~~Ka~I~~~~~~~V~~~d~~~--~~~~~~a~~~~~~~~~~g~~~~~~~ 234 (437)
T 3nrs_A 158 ATNIV-DSDVAAITSIALDHTDWLGYDRESIGREKAGVFRGGKPAVVGEPDMP--QSIADVAAELGAQLYRRDVAWKFSQ 234 (437)
T ss_dssp GGGGS-CCSEEEECCCCCCBCCCTTCSHHHHHHHHGGGCCTTSEEEECCSSCC--HHHHHHHHHHTCEEEEBTTTEEEEC
T ss_pred ccccc-CCCEEEEcCccHHHHHHhCCcHHHHHHHHHhhccCCCeEEECCccHH--HHHHHHHHHcCCcEEEecccceeee
Confidence 99998 79999999999999999999999999999999999999999977653 4556666666666654431 00
Q ss_pred -------------ccc-------ccceecCCC--cHHHHHhHHHHHHHHHHHHHhccccccccCCCCCCChHHHHHHHhc
Q 048728 244 -------------ASL-------LNGLKLGLE--GEHQYMNAGLAVALSSTWLQRTSQLGINYLDTTSPLPEQFIQGLTM 301 (536)
Q Consensus 244 -------------~~~-------~~~~~l~l~--G~hq~~Na~aAia~a~~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~ 301 (536)
... ...+.++++ |.||+.||++|+++ ..+ | ++.+.|.+||++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~Na~~Alaa~~~-~~l----g-----------i~~~~i~~gL~~ 298 (437)
T 3nrs_A 235 QEPFDQQEPVDQQINGWHWQCGERQLTGLPVPNVPLANAATALAVLHY-SEL----P-----------LSDEAIRQGLQA 298 (437)
T ss_dssp --------------CCEEEEETTEEEEEECCCSSCHHHHHHHHHHHHH-HTC----C-----------CCHHHHHHHHHH
T ss_pred cccccccccccccCceEEEecCCcceeccCCcchhHHHHHHHHHHHHH-hCC----C-----------CCHHHHHHHHHh
Confidence 000 012456666 66766666666655 222 3 678999999999
Q ss_pred CCCCCceeEEcCCCCCCCCCCCcEEEEECCCCHHHHHHHHHHHHHHHH--hhccccccCCCCCCCCCCCCCCCCcccCcc
Q 048728 302 ANLQGRAQIVPDRYTNSETSGDLVFYLDGAHSPESMEICARWFSLAIK--EENQQETFDFQPPNSSGSSNGLPQRQHDGK 379 (536)
Q Consensus 302 ~~~pGR~E~v~~~~~~~~~~~~~~vilD~AHnp~si~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (536)
+.||||||++... +.+|+||||||+|+++++++++...+ ..
T Consensus 299 ~~~pGR~e~v~~~---------~~vi~D~AHNp~a~~all~~l~~~~~~~~~---------------------------- 341 (437)
T 3nrs_A 299 ASLPGRFQVVSEQ---------PLLILDVAHNPHAARYLVNRLAQVINPVNA---------------------------- 341 (437)
T ss_dssp CCCTTSSEEEETT---------TEEEECCCCSHHHHHHHHHHHHHTC---------------------------------
T ss_pred CCCCCceEEEecC---------CeEEEECCCCHHHHHHHHHHHHhhcchhhh----------------------------
Confidence 9999999999754 67999999999999999995541000 20
Q ss_pred ccCCCcEEEEEecCCCCChhhhhHHHHHHHHhcCCcccEEEEecCCcccccCCCCCCCCCcchhchhHHHHHHHHHHHhc
Q 048728 380 IRKNSAQILLFNCMSVRDPQLLLPSLMKTCARHGVYFKKALFVPNASVYNKVGSHALPPTETQIDLSWQFALQRVWENLM 459 (536)
Q Consensus 380 ~~~~~~~ilvfg~~~drd~~~~l~~l~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~~~~~l~ 459 (536)
++.+|+++|||+++|||...+++.+. . .+|.+++++.. ++|+ .++ + ++.+.+
T Consensus 342 -~~~~r~i~V~G~~~dkd~~~~~~~l~----~---~~~~v~~~~~~---~~r~-----~~~-------~----~l~~~~- 393 (437)
T 3nrs_A 342 -SKQGKVRAVVGMLSDKDIAGTLACLS----E---RVDEWYCAPLE---GPRG-----ASA-------G----QLAEHL- 393 (437)
T ss_dssp ----CCEEEEECCBTTBCHHHHHHHHT----T---TCCEEEECCCS---STTB-----CCH-------H----HHHTTC-
T ss_pred -cCCCCEEEEEeCCCCCCHHHHHHHHH----h---cCCEEEEeCCC---CCCC-----CCH-------H----HHHHHH-
Confidence 24568999999999999876655443 2 47888887642 2333 111 1 111111
Q ss_pred cCccccccccCCCCccccccccccccCCCCCceEeCCHHHHHHHHHHHhhhcCCCCceEEEeCchhhHHHHHHHhh
Q 048728 460 LGDKAVEAKNTDNASEDVKDYTELSARSCENSAVFSSLPLAIKWLRDSVQQNQSLRFQVLVTGSLHLIGDVLKIVK 535 (536)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~Ai~~~~~~~~~~~~~~~~VLvtGSl~LVG~vl~~l~ 535 (536)
. .. ..++++++|++++.+.++++ +.||||||||+||++++.+.
T Consensus 394 ~----------------------------~~-~~~~d~~~Ai~~a~~~a~~~----D~VLv~GS~~~v~~~~~~~~ 436 (437)
T 3nrs_A 394 V----------------------------SA-RQFSDVETAWRQAMQDADTQ----DVVIVCGSFHTVAHVMAALH 436 (437)
T ss_dssp S----------------------------SC-EECSSHHHHHHHHHHHCCTT----CEEEEESSHHHHHHHHHHTT
T ss_pred h----------------------------hC-CCcCCHHHHHHHHHHhcCCC----CeEEEEehHHHHHHHHHHhc
Confidence 0 01 46789999999998876554 38999999999999999875
No 2
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=100.00 E-value=2e-71 Score=603.07 Aligned_cols=419 Identities=24% Similarity=0.317 Sum_probs=330.7
Q ss_pred ccHHHHHHHHHhchhcccccCCCCCCCCHHHHHHHHHHcCCcccCCCCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 9 TAYEEALDALSSLITKRSRADKSNNGDRFELLSDYLKILDLDVAISQLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 9 ~~y~~a~~~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~p~~~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
.+|+++++||.++... ...+++|+||+.+++.|| +|+.++++|||||||||||||+||++||+++|+++|+|
T Consensus 25 ~~~~~~~~~l~~~~~~------~~~~~~L~r~~~ll~~lg--~p~~~~~vI~VtGTNGKtST~~~l~~iL~~~G~~vG~~ 96 (487)
T 2vos_A 25 ASLLQVEHLLDQRWPE------TRIDPSLTRISALMDLLG--SPQRSYPSIHIAGTNGKTSVARMVDALVTALHRRTGRT 96 (487)
T ss_dssp HHHHHHHHHHTTTC---------CCCTTCHHHHHHHHHTT--CGGGSSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHhhCcc------cCCCCCHHHHHHHHHHcC--CchhcCeEEEEeCCCCcHHHHHHHHHHHHHcCCCeEEE
Confidence 4699999999865321 125789999999999998 89999999999999999999999999999999999999
Q ss_pred eCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhh----c---CCCCCCCHHHHHHHHHHHHHhhCCCcEEEEecc
Q 048728 89 TSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKA----T---EDIPMPSYFRFLALLAFKIFTAEQIDVAILEVG 161 (536)
Q Consensus 89 tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~----~---~~~~~p~~fe~lt~la~~~f~~~~~d~aVlEvg 161 (536)
+|||+.++||||+|||.+++++.|.+++.++....+... + .....+++|+++|++||.+|.+.++|++|||||
T Consensus 97 tSp~l~~~~eri~i~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~fe~~t~~a~~~f~~~~~d~~VlEvg 176 (487)
T 2vos_A 97 TSPHLQSPVERISIDGKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAFADAPVDVAVVEVG 176 (487)
T ss_dssp CSSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CCCCcCcccceEEECCEECCHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 999999999999999999999999999877766543211 0 112348999999999999999999999999999
Q ss_pred cCCcccccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHccc------cCCCceeccCCChHHHHHHHHHhhcCCCC
Q 048728 162 LGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIF------KYGVPAFTVPQPEEAMRVLEENASKLDVP 235 (536)
Q Consensus 162 ~gg~~D~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~------k~~~~~v~~~~~~~~~~vl~~~a~~~~~~ 235 (536)
+||++|+||++ +|+++|||||++||+++||+|+|+|+++|++|| ++++++|++.|++.+..++.+.+.+.+++
T Consensus 177 ~gg~~d~tn~i-~p~vaVITnI~~DHld~lG~t~e~ia~~Ka~i~~~~~~~k~~~~~V~~~dd~~~~~~~~~~a~~~~~~ 255 (487)
T 2vos_A 177 MGGRWDATNVI-NAPVAVITPISIDHVDYLGADIAGIAGEKAGIITRAPDGSPDTVAVIGRQVPKVMEVLLAESVRADAS 255 (487)
T ss_dssp SSSTTSTTCSS-CCSEEEECCCCCCBCSCSSCCHHHHHHHHHTTCCCCC--CCCCEEEECCCCHHHHHHHHHHHHHTTCE
T ss_pred CCCcccccccc-CCCEEEECCcchhhhhhhCCcHHHHHHHHHHHhhcccccCCCCEEEEeCCCHHHHHHHHHHHHHcCCe
Confidence 99999999998 799999999999999999999999999999999 78889999999998877777777665665
Q ss_pred EEEeCC-C--------------Cc----ccccceecCCCcHHHHHhHHHHHHHHHHHHHhccccccccCCCCCCChHHHH
Q 048728 236 LQVVPP-L--------------DA----SLLNGLKLGLEGEHQYMNAGLAVALSSTWLQRTSQLGINYLDTTSPLPEQFI 296 (536)
Q Consensus 236 l~~~~~-~--------------~~----~~~~~~~l~l~G~hq~~Na~aAia~a~~ll~~~g~~~~~~~~~~~~~~~~i~ 296 (536)
+..++. + .. ..+..+.++++|.||++|+++|++++..++.. +. ..+++.+.|.
T Consensus 256 ~~~~g~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAiaa~~~l~~~-~~-------~~gi~~~~i~ 327 (487)
T 2vos_A 256 VAREDSEFAVLRRQIAVGGQVLQLQGLGGVYSDIYLPLHGEHQAHNAVLALASVEAFFGA-GA-------QRQLDGDAVR 327 (487)
T ss_dssp EEEBTTTBEEEEEEEETTEEEEEEEETTEEEEEEEECCCSHHHHHHHHHHHHHHHHHTTC------------CCCHHHHH
T ss_pred EEEecCceEEEeeccccCCceEEEecCCcccceeecCCCCHHHHHHHHHHHHHHHHHhhc-cc-------cCCCCHHHHH
Confidence 544321 0 00 01124678999999999999999999876210 00 0026779999
Q ss_pred HHHhcCCCCCceeEEcCCCCCCCCCCCcEEEEECCCCHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCccc
Q 048728 297 QGLTMANLQGRAQIVPDRYTNSETSGDLVFYLDGAHSPESMEICARWFSLAIKEENQQETFDFQPPNSSGSSNGLPQRQH 376 (536)
Q Consensus 297 ~gL~~~~~pGR~E~v~~~~~~~~~~~~~~vilD~AHnp~si~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (536)
+||+++.||||||++... +.+|+|+||||+|++++++++++.
T Consensus 328 ~gL~~~~~pGR~e~v~~~---------~~vi~D~AHNp~a~~a~l~~l~~~----------------------------- 369 (487)
T 2vos_A 328 AGFAAVTSPGRLERMRSA---------PTVFIDAAHNPAGASALAQTLAHE----------------------------- 369 (487)
T ss_dssp HHHHTCCCTTSSEEEETT---------TEEEECCCCSHHHHHHHHHHHHHS-----------------------------
T ss_pred HHHHhCcCCCceEEEcCC---------CeEEEECCCCHHHHHHHHHHHHHh-----------------------------
Confidence 999999999999999754 689999999999999999955431
Q ss_pred CccccCCCcEEEEEecCCCCChhhhhHHHHHHHHhcCCcccEEEEecCCcccccCCCCCCCCCcchhchhHHHHHHHHHH
Q 048728 377 DGKIRKNSAQILLFNCMSVRDPQLLLPSLMKTCARHGVYFKKALFVPNASVYNKVGSHALPPTETQIDLSWQFALQRVWE 456 (536)
Q Consensus 377 ~~~~~~~~~~ilvfg~~~drd~~~~l~~l~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~~~~ 456 (536)
++.+++++|||+++|||...+++.+. + .+|.+++|+.. ++|+ .++. .+.++++
T Consensus 370 ----~~~~~~i~V~G~~~dkd~~~~~~~l~----~---~~d~vilt~~~---~~r~-----~~~~--------~l~~~~~ 422 (487)
T 2vos_A 370 ----FDFRFLVGVLSVLGDKDVDGILAALE----P---VFDSVVVTHNG---SPRA-----LDVE--------ALALAAG 422 (487)
T ss_dssp ----CCCSEEEEEECCBTTBCHHHHHHHHT----T---TCSEEEECCCS---CTTB-----CCHH--------HHHHHHH
T ss_pred ----cCCCCEEEEEEecCCCCHHHHHHHHH----h---hCCEEEEeCCC---CcCC-----CCHH--------HHHHHHH
Confidence 34568999999999999877765543 2 47899888642 2332 1111 2233333
Q ss_pred HhccCccccccccCCCCccccccccccccCCCCCceEeCCHHHHHHHHHHHhhhcC---------CCCceEEEeCchhhH
Q 048728 457 NLMLGDKAVEAKNTDNASEDVKDYTELSARSCENSAVFSSLPLAIKWLRDSVQQNQ---------SLRFQVLVTGSLHLI 527 (536)
Q Consensus 457 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~Ai~~~~~~~~~~~---------~~~~~VLvtGSl~LV 527 (536)
.... ...+.+++++++|++++.+.+++++ ..++.||||||||||
T Consensus 423 ~~~~---------------------------~~~~~~~~~~~~Ai~~a~~~a~~~~~~~~~~~~~~~~d~vlv~GS~y~v 475 (487)
T 2vos_A 423 ERFG---------------------------PDRVRTAENLRDAIDVATSLVDDAAADPDVAGDAFSRTGIVITGSVVTA 475 (487)
T ss_dssp HHHC---------------------------GGGEEECSSHHHHHHHHHHHHHHHHTCTTTTC----CEEEEEESSHHHH
T ss_pred hhcC---------------------------CCceEecCCHHHHHHHHHHhcccCcccccccccccCCCEEEEEeeHHHH
Confidence 2211 0125678999999999988776540 012589999999999
Q ss_pred HHHHHHhhC
Q 048728 528 GDVLKIVKK 536 (536)
Q Consensus 528 G~vl~~l~~ 536 (536)
|+++++|.+
T Consensus 476 g~~~~~l~~ 484 (487)
T 2vos_A 476 GAARTLFGR 484 (487)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHhhhh
Confidence 999998763
No 3
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=100.00 E-value=2.8e-69 Score=577.64 Aligned_cols=403 Identities=24% Similarity=0.357 Sum_probs=322.5
Q ss_pred ccHHHHHHHHHhchhcccccCCCCCCCCHHHHHHHHHHcCCcccCCCCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 9 TAYEEALDALSSLITKRSRADKSNNGDRFELLSDYLKILDLDVAISQLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 9 ~~y~~a~~~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~p~~~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
|+|+|+++||++++.+. .+++|++|+++|++|| +|+.++++|||||||||||||+||++||+++|++||++
T Consensus 1 ~~~~~~~~~l~~~~~~~-------~~~~l~~~~~~l~~lg--~p~~~~~vI~VtGTnGKtTT~~~l~~iL~~~G~~vg~~ 71 (428)
T 1jbw_A 1 MNYTETVAYIHSFPRLA-------KTGDHRRILTLLHALG--NPQQQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLY 71 (428)
T ss_dssp CCHHHHHHHHTTCCCCC-------CCSSCHHHHHHHHHTT--CGGGSSCEEEEECSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCHHHHHHHHHhhcccC-------CCCCHHHHHHHHHHcC--CchhcCcEEEEECCCChHHHHHHHHHHHHHCCCCEEEE
Confidence 58999999999875432 5689999999999998 78889999999999999999999999999999999999
Q ss_pred eCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhh-cCCCCCCCHHHHHHHHHHHHHhhCCCcEEEEecccCCccc
Q 048728 89 TSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKA-TEDIPMPSYFRFLALLAFKIFTAEQIDVAILEVGLGGRFD 167 (536)
Q Consensus 89 tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~-~~~~~~p~~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D 167 (536)
+|||+.+++|||+|||.+++++.|.++|+++.+...... ..+...+++|+++|++||.+|.+.++|++|+|||+||++|
T Consensus 72 ~sp~l~~~~eri~i~g~~i~~~~~~~~~~~~~~~~~~ig~~~~~~~~t~~e~~t~~a~~~f~~~~~d~~VlEvg~~g~~d 151 (428)
T 1jbw_A 72 TSPFIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGIGGDTD 151 (428)
T ss_dssp CSSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTS
T ss_pred eCCccCccceEEEECCEECCHHHHHHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHhCCCCEEEEecCCCcccc
Confidence 999999999999999999999999999988876554321 0112348999999999999999999999999999999999
Q ss_pred ccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHccccCCCceeccCCChHHHHHHHHHhhcCCCCEEEeCC-C----
Q 048728 168 ATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKYGVPAFTVPQPEEAMRVLEENASKLDVPLQVVPP-L---- 242 (536)
Q Consensus 168 ~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k~~~~~v~~~~~~~~~~vl~~~a~~~~~~l~~~~~-~---- 242 (536)
.++++ +|+++|||||++||+|+||+|+|+|+++|++||++++++|++.|++.+..++...+.+.+++++.++. +
T Consensus 152 ~t~~~-~p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~~~~~~v~~~dd~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 230 (428)
T 1jbw_A 152 STNVI-TPVVSVLTEVALDHQKLLGHTITAIAKHKAGIIKRGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFDRDFSVPK 230 (428)
T ss_dssp TTCSC-CCSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCCTTCCEEECCCCHHHHHHHHHHHHHHTCCEEEBTTTEEEEE
T ss_pred ccccC-CCCEEEECcCcHhhhhhhCCCHHHHHHHHhccccCCceEEEeCCCHHHHHHHHHHHHHcCCcEEEeCccceeec
Confidence 99998 79999999999999999999999999999999999999999999988877777666544555443321 0
Q ss_pred -----Ccc---------cccceecCCCcHHHHHhHHHHHHHHHHHHHhccccccccCCCCCCChHHHHHHHhcCCCCCce
Q 048728 243 -----DAS---------LLNGLKLGLEGEHQYMNAGLAVALSSTWLQRTSQLGINYLDTTSPLPEQFIQGLTMANLQGRA 308 (536)
Q Consensus 243 -----~~~---------~~~~~~l~l~G~hq~~Na~aAia~a~~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~~~~pGR~ 308 (536)
... .+..+.++++|.||++|+++|++++..+....+. .++++.|.++|+++.|||||
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~l~g~~~~---------~i~~~~i~~~L~~~~~~gR~ 301 (428)
T 1jbw_A 231 AKLHGWGQRFTYEDQDGRISDLEVPLVGDYQQRNMAIAIQTAKVYAKQTEW---------PLTPQNIRQGLAASHWPARL 301 (428)
T ss_dssp EEECSSSEEEEEEETTEEEEEEEESCCSTHHHHHHHHHHHHHHHHHHHTTC---------CCCHHHHHHHHHTCCCTTSS
T ss_pred cccccCCceEEEecCCccccccccCCCChhHHHHHHHHHHHHHHHhhccCC---------CCCHHHHHHHHHhCcCCCce
Confidence 000 0115678999999999999999999876221110 15678999999999999999
Q ss_pred eEEcCCCCCCCCCCCcEEEEECCCCHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCcccCccccCCCcEEE
Q 048728 309 QIVPDRYTNSETSGDLVFYLDGAHSPESMEICARWFSLAIKEENQQETFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQIL 388 (536)
Q Consensus 309 E~v~~~~~~~~~~~~~~vilD~AHnp~si~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 388 (536)
|++... ..+|+|+||||+|++++++++++. ++ +++++
T Consensus 302 e~~~~~---------~~viiD~AhNp~s~~a~l~~l~~~---------------------------------~~-~~~i~ 338 (428)
T 1jbw_A 302 EKISDT---------PLIVIDGAHNPDGINGLITALKQL---------------------------------FS-QPITV 338 (428)
T ss_dssp EEEETT---------TTEEEECCCSHHHHHHHHHHHHHH---------------------------------CS-SCCEE
T ss_pred EEecCC---------CcEEEECCcCHHHHHHHHHHHHHh---------------------------------cC-CCEEE
Confidence 999753 468999999999999999966542 23 68899
Q ss_pred EEecCCCCChhhhhHHHHHHHHhcCCcccEEEE-ecCCcccccCCCCCCCCCcchhchhHHHHHHHHHHHhccCcccccc
Q 048728 389 LFNCMSVRDPQLLLPSLMKTCARHGVYFKKALF-VPNASVYNKVGSHALPPTETQIDLSWQFALQRVWENLMLGDKAVEA 467 (536)
Q Consensus 389 vfg~~~drd~~~~l~~l~~~~~~~~~~~d~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~~~~~l~~~~~~~~~ 467 (536)
|||++++||...+++.+. + .+|.+++ ++.. +++. .+ + + .+...
T Consensus 339 V~g~~~~kd~~~~~~~~~----~---~~d~vi~~~~~~---~~r~---~~--~-------~--------~l~~~------ 382 (428)
T 1jbw_A 339 IAGILADKDYAAMADRLT----A---AFSTVYLVPVPG---TPRA---LP--E-------A--------GYEAL------ 382 (428)
T ss_dssp EEECSSSTTHHHHHHHHH----H---HCSEEEECCCSC---C--------------------------------------
T ss_pred EEeeCCCCCHHHHHHHHh----h---hCCEEEEECCCC---CCCC---CC--H-------H--------HHHhh------
Confidence 999999999887655543 2 3788988 5411 2222 00 0 0 01000
Q ss_pred ccCCCCccccccccccccCCCCCceEeCCHHHHHHHHHHHhhhcCCCCceEEEeCchhhHHHHHHHhh
Q 048728 468 KNTDNASEDVKDYTELSARSCENSAVFSSLPLAIKWLRDSVQQNQSLRFQVLVTGSLHLIGDVLKIVK 535 (536)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~Ai~~~~~~~~~~~~~~~~VLvtGSl~LVG~vl~~l~ 535 (536)
..+.+++++++|++++.+.+ ++ +.|||+||+|++|++++.|+
T Consensus 383 ---------------------~~~~~~~~~~~ai~~a~~~~-~~----d~vLv~GS~~~~~~~~~~l~ 424 (428)
T 1jbw_A 383 ---------------------HEGRLKDSWQEALAASLNDV-PD----QPIVITGSLYLASAVRQTLL 424 (428)
T ss_dssp ------------------------CBCSSHHHHHHHHHHHC-TT----SCEEEEESHHHHHHHHHHHT
T ss_pred ---------------------hCCeecCCHHHHHHHHHhhC-CC----CeEEEEeeHHHHHHHHHHHh
Confidence 01345689999999988766 43 37999999999999999875
No 4
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=100.00 E-value=8.5e-69 Score=576.11 Aligned_cols=402 Identities=31% Similarity=0.431 Sum_probs=318.2
Q ss_pred CcccHHHHHHHHHhchhcccccCCCCCCCCHHHHHHHHHHcCCcccCCCCcEEEEcCCCchhHHHHHHHHHHHhCCCCEE
Q 048728 7 TVTAYEEALDALSSLITKRSRADKSNNGDRFELLSDYLKILDLDVAISQLKVIHVAGTKGKGSTCTFTESILRNCGFRTG 86 (536)
Q Consensus 7 ~~~~y~~a~~~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~p~~~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g 86 (536)
+-|.|+++++||+++..+.. .+++|++|+++|++|| +|+.++++|||||||||||||+||++||+++|++|+
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~------~~~gl~~~~~~l~~lg--~p~~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~vg 82 (442)
T 1o5z_A 11 HHMAYLEVLRYLYHKRPMGK------VKPGLERISMLLSKLG--NPHLEYKTIHIGGTNGKGSVANMVSNILVSQGYRVG 82 (442)
T ss_dssp CHHHHHHHHHHHHTC-----------CCCCSHHHHHHHHHTT--CGGGSSEEEEEECSSSHHHHHHHHHHHHHHHTCCEE
T ss_pred hhhhHHHHHHHHHhhCcCCC------CCCCHHHHHHHHHHcC--CchhcCCEEEEECCcCHHHHHHHHHHHHHHCCCCEE
Confidence 45899999999987654320 4679999999999998 788899999999999999999999999999999999
Q ss_pred EEeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCCCHHHHHHHHHHHHHhhCCCcEEEEecccCCcc
Q 048728 87 LFTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMPSYFRFLALLAFKIFTAEQIDVAILEVGLGGRF 166 (536)
Q Consensus 87 ~~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p~~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~ 166 (536)
+|+|||+.++||||+|||.+++++.|.++|.+++....+....+...|++||++|++||.+|.+.++|++|+|||++|++
T Consensus 83 ~~~Sphl~~~neri~inG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~~t~~a~~~f~~~~~d~~VlEvg~~g~~ 162 (442)
T 1o5z_A 83 SYYSPHLSTFRERIRLNEEYISEEDVVKIYETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGRL 162 (442)
T ss_dssp EECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHTTSTTTCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTT
T ss_pred EECCCCcCccceeEEECCEECCHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCc
Confidence 99999999999999999999999999999988877654432223346899999999999999999999999999999999
Q ss_pred cccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHccccCCCceeccCCChHHHHHHHHHhhcCCCCEEEeCC-CC--
Q 048728 167 DATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKYGVPAFTVPQPEEAMRVLEENASKLDVPLQVVPP-LD-- 243 (536)
Q Consensus 167 D~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k~~~~~v~~~~~~~~~~vl~~~a~~~~~~l~~~~~-~~-- 243 (536)
|.++++ +|+++|||||++||+|+||+|+|+|+++|++||+++.++|++.|++.+..++...|.+.++++..++. +.
T Consensus 163 d~t~~~-~P~vaViTnI~~DHld~~G~t~e~ia~~K~~i~~~~~~~V~~~dd~~~~~~~~~~a~~~~~~~~~~~~d~~~~ 241 (442)
T 1o5z_A 163 DATNVV-FPLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLVTGERKREALKVMEDVARKKSSRMYVIDKDFSVK 241 (442)
T ss_dssp CGGGGC-CCSCEEECCCCC-------CCHHHHHHHHGGGCCTTCCEEECCCCHHHHHHHHHHHHHHTCCEEEBTTTBEEE
T ss_pred cccccC-CCCEEEECCccHhhhhhhCcCHHHHHHHHHhhccCCccEEEcCCChHHHHHHHHHHHHcCCcEEEeCcceeee
Confidence 999997 79999999999999999999999999999999999999999999988877777666655555554431 00
Q ss_pred -------cc--------cccceecCCCcHHHHHhHHHHHHHHH--HHHHhccccccccCCCCCCChHHHHHHHhcCCCCC
Q 048728 244 -------AS--------LLNGLKLGLEGEHQYMNAGLAVALSS--TWLQRTSQLGINYLDTTSPLPEQFIQGLTMANLQG 306 (536)
Q Consensus 244 -------~~--------~~~~~~l~l~G~hq~~Na~aAia~a~--~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~~~~pG 306 (536)
.. .+..+.++++|.||++|+++|++++. .+ | ++++.|.++|+++.|||
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~~~~~~l----g-----------i~~~~i~~~L~~~~~~g 306 (442)
T 1o5z_A 242 VKSLKLHENRFDYCGENTFEDLVLTMNGPHQIENAGVALKTLEATGL----P-----------LSEKAIREGLKNAKNLG 306 (442)
T ss_dssp EEECCTTCEEEEEESSSEEEEEEESSCSTHHHHHHHHHHHHHHHHCC----C-----------CCHHHHHHHHHHCCCTT
T ss_pred ccccccCCceEEEeccccccccccCCCcHhHHHHHHHHHHHHHHhhc----C-----------CCHHHHHHHHHhCCCCC
Confidence 00 01146789999999999999999998 66 5 78899999999999999
Q ss_pred ceeEEcCCCCCCCCCCCcEEEEECCCCHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCcccCccccCCCcE
Q 048728 307 RAQIVPDRYTNSETSGDLVFYLDGAHSPESMEICARWFSLAIKEENQQETFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQ 386 (536)
Q Consensus 307 R~E~v~~~~~~~~~~~~~~vilD~AHnp~si~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (536)
|||++... +..+|+|+||||+|++++++++++. ++.+++
T Consensus 307 R~e~~~~~--------~~~viiD~AhNp~s~~~~l~~l~~~---------------------------------~~~~~~ 345 (442)
T 1o5z_A 307 RFEILEKN--------GKMYILDGAHNPHGAESLVRSLKLY---------------------------------FNGEPL 345 (442)
T ss_dssp SSEEEEET--------TEEEEECCCCSHHHHHHHHHHHHHH---------------------------------CTTCCE
T ss_pred ceEEEEcC--------CCeEEEECCcCHHHHHHHHHHHHHh---------------------------------CCCCCE
Confidence 99999754 3679999999999999999966542 244688
Q ss_pred EEEEecCCCCChhhhhHHHHHHHHhcCCcccEEEEecCCcccccCCCCCCCCCcchhchhHHHHHHHHHHHhccCccccc
Q 048728 387 ILLFNCMSVRDPQLLLPSLMKTCARHGVYFKKALFVPNASVYNKVGSHALPPTETQIDLSWQFALQRVWENLMLGDKAVE 466 (536)
Q Consensus 387 ilvfg~~~drd~~~~l~~l~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~~~~~l~~~~~~~~ 466 (536)
++|||++++||...+++.+ .+ .+|.+++++.. ++|+ .++. .+.+.+... .
T Consensus 346 i~V~g~~~dkd~~~~~~~l----~~---~~d~vi~~~~~---~~r~-----~~~~--------~i~~~~~~~-~------ 395 (442)
T 1o5z_A 346 SLVIGILDDKNREDILRKY----TG---IFERVIVTRVP---SPRM-----KDMN--------SLVDMAKKF-F------ 395 (442)
T ss_dssp EEEECCCTTSCHHHHHGGG----TT---TCSEEEECCCS---STTC-----CCHH--------HHHHHHHHH-C------
T ss_pred EEEEecCCCCCHHHHHHHH----Hh---hCCEEEEECCC---CCCC-----CCHH--------HHHHHHHhc-C------
Confidence 9999999999987654333 22 58998888642 2222 1111 122222221 0
Q ss_pred cccCCCCccccccccccccCCCCCceEeCCHHHHHHHHHHHhhhcCCCCceEEEeCchhhHHHHHHHhh
Q 048728 467 AKNTDNASEDVKDYTELSARSCENSAVFSSLPLAIKWLRDSVQQNQSLRFQVLVTGSLHLIGDVLKIVK 535 (536)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~Ai~~~~~~~~~~~~~~~~VLvtGSl~LVG~vl~~l~ 535 (536)
..+.+++++++|++++ ++.||||||+|++|++++.|+
T Consensus 396 ----------------------~~~~~~~~~~~Ai~~a----------~d~VLv~GS~~~~~~~~~~l~ 432 (442)
T 1o5z_A 396 ----------------------KNVEVIEDPLEAIEST----------ERATVVTGSLFLVGYVREFLT 432 (442)
T ss_dssp ----------------------SCCEECSSHHHHHHTC----------CSEEEEESCHHHHHHHHHHHH
T ss_pred ----------------------CCceecCCHHHHHHhC----------CCEEEEEeeHHHHHHHHHHHH
Confidence 1245678999998765 237999999999999998874
No 5
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=100.00 E-value=2.9e-65 Score=545.48 Aligned_cols=394 Identities=29% Similarity=0.361 Sum_probs=315.3
Q ss_pred cccHHHHHHHHHhchhcccccCCCCCCCCHHHHHHHHHHcCCcccCCCCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEE
Q 048728 8 VTAYEEALDALSSLITKRSRADKSNNGDRFELLSDYLKILDLDVAISQLKVIHVAGTKGKGSTCTFTESILRNCGFRTGL 87 (536)
Q Consensus 8 ~~~y~~a~~~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~p~~~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~ 87 (536)
.++|+++++||.++... ..+++|+||+++|++|| +|+.++++|||||||||||||+||++||+++|+++|+
T Consensus 10 ~~~~~~~~~~~~~~~~~-------~~~~gl~r~~~~l~~lg--~p~~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~~g~ 80 (422)
T 1w78_A 10 ASPLASWLSYLENLHSK-------TIDLGLERVSLVAARLG--VLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGV 80 (422)
T ss_dssp TSCHHHHHHHHTTSSSS-------SCCCCSHHHHHHHHHHT--CSSCSSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred hhhHHHHHHHHHhcccC-------CCCCCHHHHHHHHHHcC--CcccCCcEEEEeCCcChHHHHHHHHHHHHHCCCCEEE
Confidence 45799999999876432 25679999999999999 7999999999999999999999999999999999999
Q ss_pred EeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCCCHHHHHHHHHHHHHhhCCCcEEEEecccCCccc
Q 048728 88 FTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMPSYFRFLALLAFKIFTAEQIDVAILEVGLGGRFD 167 (536)
Q Consensus 88 ~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p~~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D 167 (536)
|+|||+.++||||+|||.+++++.|.+++.++...+. + ..+++|+++|++||.+|.+.++|++|+|||++|++|
T Consensus 81 ~~s~~l~~~neri~i~g~~i~~~~~~~~~~~v~~~~~-----~-~~~t~~e~~t~~a~~~~~~~~~d~~VlEvgl~~~~d 154 (422)
T 1w78_A 81 YSSPHLVRYTERVRVQGQELPESAHTASFAEIESARG-----D-ISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLD 154 (422)
T ss_dssp ECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHTT-----T-CCCCHHHHHHHHHHHHHHHHTCSEEEEECSSSSTTS
T ss_pred ECCCCcCcCceEEEECCEECCHHHHHHHHHHHHHHhc-----c-CCCChHHHHHHHHHHHHHHcCCCEEEEecCCCcccc
Confidence 9999999999999999999999999999877655332 1 247999999999999999999999999999999999
Q ss_pred ccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHccccCCCceeccCCChHHHHHHHHHhhcCCCCEEEeCC-C----
Q 048728 168 ATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKYGVPAFTVPQPEEAMRVLEENASKLDVPLQVVPP-L---- 242 (536)
Q Consensus 168 ~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k~~~~~v~~~~~~~~~~vl~~~a~~~~~~l~~~~~-~---- 242 (536)
.++++ +|+++|||||++||+|+||+|+|+|+++|++||+++.++|++.+++. .++...+.+.++++..++. +
T Consensus 155 ~t~~~-~p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~~~~~~v~~~d~~~--~~~~~~a~~~~~~~~~~g~~~~~~~ 231 (422)
T 1w78_A 155 ATNIV-DADVAVVTSIALDHTDWLGPDRESIGREKAGIFRSEKPAIVGEPEMP--STIADVAQEKGALLQRRGVEWNYSV 231 (422)
T ss_dssp GGGGS-CCSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCCTTSEEEECCSSCC--HHHHHHHHHHTCEEEEBTTTBEEEE
T ss_pred cccCC-CCCEEEECCcChhhhhhhCCCHHHHHHHHHhhccCCCcEEEcCccHH--HHHHHHHHHcCCceEEeCcceeeec
Confidence 99988 79999999999999999998999999999999999999998876553 3444444444445444331 0
Q ss_pred Cccc--c----cc-eecCCCcHHHHHhHHHHHHHHHHHHHhccccccccCCCCCCChHHHHHHHhcCCCCCceeEEcCCC
Q 048728 243 DASL--L----NG-LKLGLEGEHQYMNAGLAVALSSTWLQRTSQLGINYLDTTSPLPEQFIQGLTMANLQGRAQIVPDRY 315 (536)
Q Consensus 243 ~~~~--~----~~-~~l~l~G~hq~~Na~aAia~a~~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~~~~pGR~E~v~~~~ 315 (536)
.... + .. +.++++ .||++|+++|++++..+ + .+++++.|.++|++|.||||||++...
T Consensus 232 ~~~~~~~~~~~~~~~~l~l~-~hn~~Na~aAia~~~~~----~---------~gi~~~~i~~~L~~~~~~gR~e~~~~~- 296 (422)
T 1w78_A 232 TDHDWAFSDAHGTLENLPLP-LVPQPNAATALAALRAS----G---------LEVSENAIRDGIASAILPGRFQIVSES- 296 (422)
T ss_dssp CSSCEEEEETTEEEEEECCC-SSCHHHHHHHHHHHHHH----T---------CCCCHHHHHHHHHHCCCTTSSEEEETT-
T ss_pred cCceEEEecCCcccccCCch-HHHHHHHHHHHHHHHHh----C---------CCCCHHHHHHHHHhCCCCceEEEEeCC-
Confidence 0000 0 11 577888 99999999999999875 3 026789999999999999999999754
Q ss_pred CCCCCCCCcEEEEECCCCHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCcccCccccCCCcEEEEEecCCC
Q 048728 316 TNSETSGDLVFYLDGAHSPESMEICARWFSLAIKEENQQETFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFNCMSV 395 (536)
Q Consensus 316 ~~~~~~~~~~vilD~AHnp~si~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg~~~d 395 (536)
..+|+|+||||+|++++++++++. .+.+++++|||++++
T Consensus 297 --------~~~i~D~Ahnp~s~~~~l~~l~~~---------------------------------~~~~~~i~V~g~~~~ 335 (422)
T 1w78_A 297 --------PRVIFDVAHNPHAAEYLTGRMKAL---------------------------------PKNGRVLAVIGMLHD 335 (422)
T ss_dssp --------TEEEEECCCSHHHHHHHHHHHHHS---------------------------------CSCSCEEEEECCBTT
T ss_pred --------CeEEEECCCCHHHHHHHHHHHHHh---------------------------------CCCCCEEEEEeccCC
Confidence 579999999999999999955431 224689999999999
Q ss_pred CChhhhhHHHHHHHHhcCCcccEEEEecCCcccccCCCCCCCCCcchhchhHHHHHHHHHHHhccCccccccccCCCCcc
Q 048728 396 RDPQLLLPSLMKTCARHGVYFKKALFVPNASVYNKVGSHALPPTETQIDLSWQFALQRVWENLMLGDKAVEAKNTDNASE 475 (536)
Q Consensus 396 rd~~~~l~~l~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~~~~~l~~~~~~~~~~~~~~~~~ 475 (536)
||...+++.+ .+ .+|.+++++.. ++++ .++ + ++.+.+.
T Consensus 336 kd~~~~~~~l----~~---~~d~vi~~~~~---~~r~-----~~~-------~----~l~~~~~---------------- 373 (422)
T 1w78_A 336 KDIAGTLAWL----KS---VVDDWYCAPLE---GPRG-----ATA-------E----QLLEHLG---------------- 373 (422)
T ss_dssp SCHHHHHHHH----HT---TCSEEEECCCC---SSSB-----CCH-------H----HHHHHHS----------------
T ss_pred CCHHHHHHHH----Hh---hCCEEEEECCC---CCCC-----CCH-------H----HHHHHHh----------------
Confidence 9987654443 22 47889888642 2222 111 1 1111110
Q ss_pred ccccccccccCCCCCceEeCCHHHHHHHHHHHhhhcCCCCceEEEeCchhhHHHHHHHhh
Q 048728 476 DVKDYTELSARSCENSAVFSSLPLAIKWLRDSVQQNQSLRFQVLVTGSLHLIGDVLKIVK 535 (536)
Q Consensus 476 ~~~~~~~~~~~~~~~~~v~~si~~Ai~~~~~~~~~~~~~~~~VLvtGSl~LVG~vl~~l~ 535 (536)
.+.+++++++|++++.+.++++ +.|||+||+|++|++++.|+
T Consensus 374 --------------~~~~~~~~~~ai~~a~~~~~~~----d~vLv~GS~~~~~~~~~~l~ 415 (422)
T 1w78_A 374 --------------NGKSFDSVAQAWDAAMADAKAE----DTVLVCGSFHTVAHVMEVID 415 (422)
T ss_dssp --------------SCEECSSHHHHHHHHHHHCCTT----CEEEEESSHHHHHHHHHHHH
T ss_pred --------------hcccCCCHHHHHHHHHHhcCCC----CEEEEEeeHHHHHHHHHHHH
Confidence 1346789999999998876544 48999999999999998875
No 6
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=3.9e-51 Score=445.24 Aligned_cols=348 Identities=17% Similarity=0.154 Sum_probs=255.1
Q ss_pred HHHHHHHHHHcC---CcccCCCCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHH
Q 048728 37 FELLSDYLKILD---LDVAISQLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFL 113 (536)
Q Consensus 37 l~~~~~~L~~Lg---~~~p~~~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~ 113 (536)
+++++++|..|+ +++|+.++++||||||||||||++||++||+++|+++++++|++ ..+++..++.
T Consensus 86 V~d~~~aL~~la~~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gs~~-------~~i~~~~~~~---- 154 (498)
T 1e8c_A 86 LSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVG-------NGLLGKVIPT---- 154 (498)
T ss_dssp ETTHHHHHHHHHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTE-------EEETTCCBCC----
T ss_pred ECCHHHHHHHHHHHHhCCCcccCeEEEEeCCcChHHHHHHHHHHHHhCCCCEEEECCCC-------cccCCeeeec----
Confidence 556677777765 45888899999999999999999999999999999999999994 5566654431
Q ss_pred HHHHHHHHhhhhhhcCCCCCCCHHHHHHHHH-HHHHhhCCCcEEEEeccc----CCcccccccccCCcEEEEcCCCchhH
Q 048728 114 AYFWWCYDRLKEKATEDIPMPSYFRFLALLA-FKIFTAEQIDVAILEVGL----GGRFDATNVVQKPVVCGISSLGYDHM 188 (536)
Q Consensus 114 ~~~~~v~~~l~~~~~~~~~~p~~fe~lt~la-~~~f~~~~~d~aVlEvg~----gg~~D~tn~i~~P~vaVITnI~~DHl 188 (536)
.+++|+.+++++ |..|.+.++|++|||||+ +++++.+ +|+++|||||++||+
T Consensus 155 -------------------~~t~~~~~~l~~~l~~~~~~~~d~~VlEvgs~~l~~~rl~~~----~p~vaViTNI~~DHl 211 (498)
T 1e8c_A 155 -------------------ENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAAL----KFAASVFTNLSRDHL 211 (498)
T ss_dssp -------------------SSSSCCHHHHHHHHHHHHHTTCCEEEEECCHHHHHTTTTTTC----BCSEEEECCCCSCCH
T ss_pred -------------------CCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCchhhccccccc----CCCEEEEeCCChhhh
Confidence 123333344432 567788999999999997 6788875 479999999999999
Q ss_pred hhhCCCHHHHHHHHHccccC--CCceeccCCChHHHHHHHHHhh---c---CC----C---CEEEeC----C----CCc-
Q 048728 189 EILGNTLGEIAGEKAGIFKY--GVPAFTVPQPEEAMRVLEENAS---K---LD----V---PLQVVP----P----LDA- 244 (536)
Q Consensus 189 d~lG~tle~ia~~Ka~I~k~--~~~~v~~~~~~~~~~vl~~~a~---~---~~----~---~l~~~~----~----~~~- 244 (536)
|+|| |+|+|+++|++||+. ++++|+|.||+....++..... . .+ + ++.... . |..
T Consensus 212 d~~g-t~e~ia~aK~~i~~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~v~~~g~~~~~~~~d~~~~~~~~~~~g~~f~~~ 290 (498)
T 1e8c_A 212 DYHG-DMEHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 290 (498)
T ss_dssp HHHS-SHHHHHHHHHHHHHTSBCCEEEEETTSHHHHHHHTTCTTCEEEESSSCCCTTTCSEEEEEEEEEECSSCEEEEEE
T ss_pred hccC-CHHHHHHHHHHHhccCCCCeEEEECCCHHHHHHHHhhhccCCcEEEEecCCCCCcCCEEEEEEEEcCCceEEEEE
Confidence 9999 999999999999985 6778999999876554432111 0 11 1 222110 0 000
Q ss_pred --ccccceecCCCcHHHHHhHHHHHHHHHHHHHhccccccccCCCCCCChHHHHHHHhcCC-CCCceeEEcCCCCCCCCC
Q 048728 245 --SLLNGLKLGLEGEHQYMNAGLAVALSSTWLQRTSQLGINYLDTTSPLPEQFIQGLTMAN-LQGRAQIVPDRYTNSETS 321 (536)
Q Consensus 245 --~~~~~~~l~l~G~hq~~Na~aAia~a~~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~~~-~pGR~E~v~~~~~~~~~~ 321 (536)
.....+.++++|.||++|+++|++++..+ | ++++.|.++|++|. ||||||++...
T Consensus 291 ~~~~~~~~~l~l~G~hnv~NalaAia~~~~l----G-----------i~~~~i~~~L~~~~~~~gR~e~v~~~------- 348 (498)
T 1e8c_A 291 SSWGDGEIESHLMGAFNVSNLLLALATLLAL----G-----------YPLADLLKTAARLQPVCGRMEVFTAP------- 348 (498)
T ss_dssp ETTCCEEEEECSCSHHHHHHHHHHHHHHHHT----T-----------CCHHHHHHHGGGCCCCTTSSEEECCT-------
T ss_pred ECCceEEEEecCCcHHHHHHHHHHHHHHHHc----C-----------CCHHHHHHHHHhCCCCCCceEEEEcC-------
Confidence 00114678999999999999999999988 5 78899999999996 99999999754
Q ss_pred CCcEEEEECCCCHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCcccCccccCCCcEEEEEecCCCCChhhh
Q 048728 322 GDLVFYLDGAHSPESMEICARWFSLAIKEENQQETFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFNCMSVRDPQLL 401 (536)
Q Consensus 322 ~~~~vilD~AHnp~si~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg~~~drd~~~~ 401 (536)
+++.||+||||||+|+++++++|++ .+.+|+|+||||+++||...+
T Consensus 349 ~~~~vi~DyahnP~s~~a~l~~l~~----------------------------------~~~~r~i~V~G~g~dr~~~~~ 394 (498)
T 1e8c_A 349 GKPTVVVDYAHTPDALEKALQAARL----------------------------------HCAGKLWCVFGCGGDRDKGKR 394 (498)
T ss_dssp TSCEEEEECCCSHHHHHHHHHHHHH----------------------------------TCSSCEEEEECCCSSSCSTHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHh----------------------------------hCCCCEEEEECCCCCcchhHH
Confidence 4579999999999999999995543 234689999999999987654
Q ss_pred hHHHHHHHHhcCCcccEEEEecCCcccccCCCCCCCCCcchhchhHHHHHHHHHHHhccCccccccccCCCCcccccccc
Q 048728 402 LPSLMKTCARHGVYFKKALFVPNASVYNKVGSHALPPTETQIDLSWQFALQRVWENLMLGDKAVEAKNTDNASEDVKDYT 481 (536)
Q Consensus 402 l~~l~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 481 (536)
+.|++.+.. .+|.++++++ ++++ +++. .+.+.+..+...
T Consensus 395 -~~~~~~~~~---~~d~vi~~~~----~~r~-----e~~~-----------~i~~~~~~~~~~----------------- 433 (498)
T 1e8c_A 395 -PLMGAIAEE---FADVAVVTDD----NPRT-----EEPR-----------AIINDILAGMLD----------------- 433 (498)
T ss_dssp -HHHHHHHHH---HCSEEEECCS----CCBT-----SCHH-----------HHHHHHHTTSSC-----------------
T ss_pred -HHHHHHHHh---CCCEEEEcCC----CCCC-----CCHH-----------HHHHHHHhhccc-----------------
Confidence 445665543 4798988864 3333 2221 111122111100
Q ss_pred ccccCCCCCceEeCCHHHHHHHHHHHhhhcCCCCceEEEeCchhh
Q 048728 482 ELSARSCENSAVFSSLPLAIKWLRDSVQQNQSLRFQVLVTGSLHL 526 (536)
Q Consensus 482 ~~~~~~~~~~~v~~si~~Ai~~~~~~~~~~~~~~~~VLvtGSl~L 526 (536)
...+.+++++++|++++.+.++++ +.|||+||.|.
T Consensus 434 ------~~~~~~~~~~~~ai~~a~~~a~~g----d~VLv~GkG~~ 468 (498)
T 1e8c_A 434 ------AGHAKVMEGRAEAVTCAVMQAKEN----DVVLVAGKGHE 468 (498)
T ss_dssp ------GGGSEECSCHHHHHHHHHHHSCTT----CEEEEESCTTC
T ss_pred ------cCceEEECCHHHHHHHHHHhCCCC----CEEEEecCCCc
Confidence 002456799999999998877554 48999999875
No 7
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=100.00 E-value=3e-50 Score=441.77 Aligned_cols=352 Identities=20% Similarity=0.228 Sum_probs=258.4
Q ss_pred HHHHHHHHHcC---CcccCCCCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHH
Q 048728 38 ELLSDYLKILD---LDVAISQLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLA 114 (536)
Q Consensus 38 ~~~~~~L~~Lg---~~~p~~~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~ 114 (536)
++++++|..|+ +++|+.++++||||||||||||++||++||+++|+++++++|. ++.+||..++..
T Consensus 125 ~d~~~aL~~la~~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~G~~~g~~gs~-------~~~i~~~~~~~~---- 193 (535)
T 2wtz_A 125 PAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTI-------GIRVGGADLPSA---- 193 (535)
T ss_dssp SSSHHHHHHHHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEESSS-------CEEETTEEECCS----
T ss_pred CCHHHHHHHHHHHHhcCccccceEEEeeCCCChHHHHHHHHHHHHHCCCCEEEECCc-------ceeECCEecccC----
Confidence 44555666554 4588889999999999999999999999999999999999996 788998877642
Q ss_pred HHHHHHHhhhhhhcCCCCCCCHHHHHHHHHH-HHHhhCCCcEEEEeccc----CCcccccccccCCcEEEEcCCCchhHh
Q 048728 115 YFWWCYDRLKEKATEDIPMPSYFRFLALLAF-KIFTAEQIDVAILEVGL----GGRFDATNVVQKPVVCGISSLGYDHME 189 (536)
Q Consensus 115 ~~~~v~~~l~~~~~~~~~~p~~fe~lt~la~-~~f~~~~~d~aVlEvg~----gg~~D~tn~i~~P~vaVITnI~~DHld 189 (536)
.+.++.+++.++ ..|.+.++|++|||||+ ++++|.+ +|+++|||||++||+|
T Consensus 194 -------------------~tt~e~~~l~~~l~~~~~~~~d~~VlEvgs~~l~~~rl~~~----~p~vaViTNI~~DHld 250 (535)
T 2wtz_A 194 -------------------LTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGT----RFAVGAFTNLSRDHLD 250 (535)
T ss_dssp -------------------SSSCCHHHHHHHHHHHHHTTCCEEEEECCHHHHHTTTTTTC----CEEEEEECCCCSCCTT
T ss_pred -------------------CccCcHHHHHHHHHHHHhCCCCEEEEECCCccccccccccC----CcCEEEEcCCChHHhh
Confidence 222334444443 45678999999999997 6788774 5899999999999999
Q ss_pred hhCCCHHHHHHHHHccccCC-----CceeccCCChHHHHHHHHHhh------cCCC-CEEEe----C-C----CCc----
Q 048728 190 ILGNTLGEIAGEKAGIFKYG-----VPAFTVPQPEEAMRVLEENAS------KLDV-PLQVV----P-P----LDA---- 244 (536)
Q Consensus 190 ~lG~tle~ia~~Ka~I~k~~-----~~~v~~~~~~~~~~vl~~~a~------~~~~-~l~~~----~-~----~~~---- 244 (536)
+|| |+|+|+++|++||+.. +.+|+|.||+....++....+ ...+ ++... . . |..
T Consensus 251 ~~g-s~e~ia~aK~~i~~~~~~~~~g~~Vln~Dd~~~~~~~~~~~~v~~~g~~~~~~d~~~~~i~~~~~~g~~f~~~~~~ 329 (535)
T 2wtz_A 251 FHP-SMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPA 329 (535)
T ss_dssp TSS-SHHHHHHHHHTTTCTTSTTCCSEEEEECSSHHHHHHHHHHSSCEEEESSSSCCSEEEEEEEEETTTEEEEEEECTT
T ss_pred hcC-CHHHHHHHHHHHhccccccCCCeEEEECCCHHHHHHHHhcCCEEEEecCCCcCcEEEEEEEEcCCCCeEEEEEeCC
Confidence 999 9999999999999844 468899999876554433210 0011 22211 0 0 100
Q ss_pred ccccceecCCCcHHHHHhHHHHHHHHHHHHHhccccccccCCCCCCChHHHHHHHhcCCCCCceeEEcCCCCCCCCCCCc
Q 048728 245 SLLNGLKLGLEGEHQYMNAGLAVALSSTWLQRTSQLGINYLDTTSPLPEQFIQGLTMANLQGRAQIVPDRYTNSETSGDL 324 (536)
Q Consensus 245 ~~~~~~~l~l~G~hq~~Na~aAia~a~~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~~~~pGR~E~v~~~~~~~~~~~~~ 324 (536)
.....+.++++|.||++|+++|++++..+ | ++++.|.++|+++.||||||++... ++.
T Consensus 330 ~~~~~~~l~l~G~hnv~NalaAia~a~~l----G-----------i~~~~i~~~L~~~~~~gR~e~v~~~-------~~~ 387 (535)
T 2wtz_A 330 GVGHHIGIRLPGRYNVANCLVALAILDTV----G-----------VSPEQAVPGLREIRVPGRLEQIDRG-------QGF 387 (535)
T ss_dssp SCEEEEEESCCSHHHHHHHHHHHHHHHHT----T-----------CCHHHHHHHHTTCCCTTSSEECCSS-------CSS
T ss_pred ceEEEEEeCCCCHHHHHHHHHHHHHHHHc----C-----------CCHHHHHHHHHhCCCCCceEEEEcC-------CCc
Confidence 01024788999999999999999999988 5 7889999999999999999999764 467
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCcccCccccCCCcEEEEEecCCCCChhhhhHH
Q 048728 325 VFYLDGAHSPESMEICARWFSLAIKEENQQETFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFNCMSVRDPQLLLPS 404 (536)
Q Consensus 325 ~vilD~AHnp~si~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg~~~drd~~~~l~~ 404 (536)
.+|+||||||+|+++++++|+ . +.+|+|+||||++|||...+ +.
T Consensus 388 ~viiDyahNP~s~~aal~~l~-----~------------------------------~~~r~i~V~G~~gdr~~~~~-~~ 431 (535)
T 2wtz_A 388 LALVDYAHKPEALRSVLTTLA-----H------------------------------PDRRLAVVFGAGGDRDPGKR-AP 431 (535)
T ss_dssp EEEEECCCSHHHHHHHHHTTC-----C------------------------------SSSCEEEEECCCTTSCGGGH-HH
T ss_pred EEEEECCCCHHHHHHHHHHhh-----C------------------------------CCCcEEEEECCCCccchhhH-HH
Confidence 799999999999999998432 1 24689999999999998765 56
Q ss_pred HHHHHHhcCCcccEEEEecCCcccccCCCCCCCCCcchhchhHHHHHHHHHHHhccCccccccccCCCCccccccccccc
Q 048728 405 LMKTCARHGVYFKKALFVPNASVYNKVGSHALPPTETQIDLSWQFALQRVWENLMLGDKAVEAKNTDNASEDVKDYTELS 484 (536)
Q Consensus 405 l~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (536)
|++.+.+ .+|.++++++ ++++ +++. ...+.+.+.+...
T Consensus 432 ~~~~a~~---~~d~vi~~~~----~~r~-----e~~~-------~i~~~i~~g~~~~----------------------- 469 (535)
T 2wtz_A 432 MGRIAAQ---LADLVVVTDD----NPRD-----EDPT-------AIRREILAGAAEV----------------------- 469 (535)
T ss_dssp HHHHHHH---HCSEEEECCS----CCTT-----SCHH-------HHHHHHHHHHTTC-----------------------
T ss_pred HHHHHHh---cCCEEEEcCC----CCCC-----CCHH-------HHHHHHHhhhhhc-----------------------
Confidence 6766644 5899988864 3333 2221 1111121111100
Q ss_pred cCCCCCceEeCCHHHHHHHHHHHhhhcCCCCceEEEeCchhhHHH
Q 048728 485 ARSCENSAVFSSLPLAIKWLRDSVQQNQSLRFQVLVTGSLHLIGD 529 (536)
Q Consensus 485 ~~~~~~~~v~~si~~Ai~~~~~~~~~~~~~~~~VLvtGSl~LVG~ 529 (536)
.....+.+++++++|++++.+.++++ +.|||+||.|.++.
T Consensus 470 -~~~~~~~~~~d~~~Ai~~a~~~a~~g----D~VLv~GsGhe~~q 509 (535)
T 2wtz_A 470 -GGDAQVVEIADRRDAIRHAVAWARPG----DVVLIAGKGHETGQ 509 (535)
T ss_dssp -C-CCEEEECCSHHHHHHHHHHHCCTT----CEEEEESCTTCCCE
T ss_pred -CCCCcEEEECCHHHHHHHHHHhCCCC----CEEEEEeCCCcceE
Confidence 00012457799999999998877654 48999999998743
No 8
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=1.2e-46 Score=405.19 Aligned_cols=325 Identities=19% Similarity=0.194 Sum_probs=231.6
Q ss_pred CHHHHHHHHHHcCCc-ccCCCCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHH
Q 048728 36 RFELLSDYLKILDLD-VAISQLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLA 114 (536)
Q Consensus 36 ~l~~~~~~L~~Lg~~-~p~~~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~ 114 (536)
.+++++++|.+|+.. ....++++||||||||||||++||++||+++| +++ +++ .+++++| |.|
T Consensus 79 ~v~~~~~~l~~la~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g-~~~-~t~---g~~n~~i---g~p-------- 142 (452)
T 1gg4_A 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCG-NTL-YTA---GNLNNDI---GVP-------- 142 (452)
T ss_dssp EESCHHHHHHHHHHHHHHHSCCEEEEEECSSCHHHHHHHHHHHHTTTS-CEE-ECC---TTCCSTT---HHH--------
T ss_pred EECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHHHHhcC-CEe-ecc---ccccCCc---chh--------
Confidence 467899999999832 11136789999999999999999999999999 554 433 3444443 111
Q ss_pred HHHHHHHhhhhhhcCCCCCCCHHHHHHHHHHHHHhhCCCcEEEEecccCCccc---ccccccCCcEEEEcCCCchhHhhh
Q 048728 115 YFWWCYDRLKEKATEDIPMPSYFRFLALLAFKIFTAEQIDVAILEVGLGGRFD---ATNVVQKPVVCGISSLGYDHMEIL 191 (536)
Q Consensus 115 ~~~~v~~~l~~~~~~~~~~p~~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D---~tn~i~~P~vaVITnI~~DHld~l 191 (536)
+|++ -.+.++|++|+|+|++++.| .++++ +|+++|||||++||+|+|
T Consensus 143 -------------------------~t~~----~~~~~~d~~VlE~g~~~~~~~~~~~~~~-~p~vaviTNI~~DHld~~ 192 (452)
T 1gg4_A 143 -------------------------MTLL----RLTPEYDYAVIELGANHQGEIAWTVSLT-RPEAALVNNLAAAHLEGF 192 (452)
T ss_dssp -------------------------HHHT----TCCTTCSEEEEECCCSSSSHHHHHHHHH-CCSEEEECCCC-------
T ss_pred -------------------------HHHH----cCCCCCcEEEEEeCCCCcchHHHHhCcc-CCCEEEECCCChHHhhhc
Confidence 1111 02467999999999988887 67765 799999999999999999
Q ss_pred CCCHHHHHHHHHcccc---CCCceeccCCChHHHHHHHHHhhcCCCCEEEeCC------C---------Cccc-------
Q 048728 192 GNTLGEIAGEKAGIFK---YGVPAFTVPQPEEAMRVLEENASKLDVPLQVVPP------L---------DASL------- 246 (536)
Q Consensus 192 G~tle~ia~~Ka~I~k---~~~~~v~~~~~~~~~~vl~~~a~~~~~~l~~~~~------~---------~~~~------- 246 (536)
| |+|+|+++|++||+ ++.++|+|.||+....+.. +.. ++++..++. + ....
T Consensus 193 g-t~e~~~~aK~~i~~~~~~~~~~V~n~dd~~~~~~~~--~~~-~~~~~~~g~~~~~~d~~~~~~~~~~~g~~~~~~~~~ 268 (452)
T 1gg4_A 193 G-SLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS--VIG-SRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPT 268 (452)
T ss_dssp --CHHHHHHHHHGGGGGCCTTCEEEEETTBCCHHHHHH--HHT-TSEEEEECSSCTTCSBEEEEEEECSSSEEEEEEETT
T ss_pred C-CHHHHHHHHHHHHhhcccCCEEEEeCCcHHHHHHHH--hhc-CCCEEEEeCCCCCCcEEEEEEEEcCCceEEEEEECC
Confidence 9 99999999999998 6678999999887655432 211 223322210 0 0000
Q ss_pred -ccceecCCCcHHHHHhHHHHHHHHHHHHHhccccccccCCCCCCChHHHHHHHhcC-CCCCceeEEcCCCCCCCCCCCc
Q 048728 247 -LNGLKLGLEGEHQYMNAGLAVALSSTWLQRTSQLGINYLDTTSPLPEQFIQGLTMA-NLQGRAQIVPDRYTNSETSGDL 324 (536)
Q Consensus 247 -~~~~~l~l~G~hq~~Na~aAia~a~~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~~-~~pGR~E~v~~~~~~~~~~~~~ 324 (536)
...+.++++|.||++|+++|++++..+ | ++++.|.++|++| +||||||++... +++
T Consensus 269 ~~~~~~l~l~G~hn~~NalaA~a~~~~l----g-----------i~~~~i~~~L~~~~~~~gR~e~~~~~-------~~~ 326 (452)
T 1gg4_A 269 GSVDVLLPLPGRHNIANALAAAALSMSV----G-----------ATLDAIKAGLANLKAVPGRLFPIQLA-------ENQ 326 (452)
T ss_dssp EEEEEEECSSSTHHHHHHHHHHHHHHHT----T-----------CCHHHHHHHHTTCCCCTTSSEEEEEE-------TTE
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHc----C-----------CCHHHHHHHHHhCCCCCCCceEEECC-------CCc
Confidence 014678999999999999999999988 5 7889999999999 599999999764 467
Q ss_pred EEEEE-CCCCHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCcccCccccCCCcEEEEEecC---CCCChhh
Q 048728 325 VFYLD-GAHSPESMEICARWFSLAIKEENQQETFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFNCM---SVRDPQL 400 (536)
Q Consensus 325 ~vilD-~AHnp~si~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg~~---~drd~~~ 400 (536)
.||+| |||||+|+++++++|+ . .+ +++++||||+ |+++. +
T Consensus 327 ~vidDsyahnp~s~~~~l~~l~----~------------------------------~~-~~~i~V~G~~~e~g~~~~-~ 370 (452)
T 1gg4_A 327 LLLDDSYNANVGSMTAAVQVLA----E------------------------------MP-GYRVLVVGDMAELGAESE-A 370 (452)
T ss_dssp EEEECCSCCCHHHHHHHHHHHH----H------------------------------SS-SEEEEEECCCCCCTTHHH-H
T ss_pred EEEEeCCCCCHHHHHHHHHHHH----h------------------------------cc-CCEEEEECCccccCChhH-H
Confidence 89999 9999999999999554 3 33 6889999997 44433 3
Q ss_pred hhHHHHHHHHhcCCcccEEEEecCCcccccCCCCCCCCCcchhchhHHHHHHHHHHHhccCccccccccCCCCccccccc
Q 048728 401 LLPSLMKTCARHGVYFKKALFVPNASVYNKVGSHALPPTETQIDLSWQFALQRVWENLMLGDKAVEAKNTDNASEDVKDY 480 (536)
Q Consensus 401 ~l~~l~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 480 (536)
..+.|++.+.+. .+|.+|++... .. ++.+.+..
T Consensus 371 ~~~~~~~~~~~~--~~d~vi~~g~~--------------~~-----------~i~~~~~~-------------------- 403 (452)
T 1gg4_A 371 CHVQVGEAAKAA--GIDRVLSVGKQ--------------SH-----------AISTASGV-------------------- 403 (452)
T ss_dssp HHHHHHHHHHHH--TCSEEEEESSS--------------TH-----------HHHHHTTS--------------------
T ss_pred HHHHHHHHHHHc--CCCEEEEECcC--------------HH-----------HHHHHhhc--------------------
Confidence 446788777542 48999998531 00 11111100
Q ss_pred cccccCCCCCceEeCCHHHHHHHHHHHhhh--cCCCCceEEEeCchhhHHH
Q 048728 481 TELSARSCENSAVFSSLPLAIKWLRDSVQQ--NQSLRFQVLVTGSLHLIGD 529 (536)
Q Consensus 481 ~~~~~~~~~~~~v~~si~~Ai~~~~~~~~~--~~~~~~~VLvtGSl~LVG~ 529 (536)
...++++++|++++.+.+++ ++ .|||+||+|++.+
T Consensus 404 ----------~~~~~~~~~ai~~a~~~~~~~~gd----~VLv~GS~~~~~e 440 (452)
T 1gg4_A 404 ----------GEHFADKTALITRLKLLIAEQQVI----TILVKGSRSAAME 440 (452)
T ss_dssp ----------CEEESSHHHHHHHHHHHHHHCSSE----EEEEECCGGGTTH
T ss_pred ----------CceeCCHHHHHHHHHHhhcccCCc----EEEEEcCCcCCHH
Confidence 12578999999999888776 43 8999999999765
No 9
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*
Probab=100.00 E-value=4.4e-46 Score=400.99 Aligned_cols=331 Identities=15% Similarity=0.131 Sum_probs=234.9
Q ss_pred HHHHHHHHHHcCCc-ccCCCCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHH
Q 048728 37 FELLSDYLKILDLD-VAISQLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAY 115 (536)
Q Consensus 37 l~~~~~~L~~Lg~~-~p~~~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~ 115 (536)
.++++++|..|+.. ....++++||||||||||||++||++||+++|. .++||| +++++| |.|
T Consensus 80 v~~~~~al~~la~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~---~~~s~g--~~n~~i---g~p--------- 142 (454)
T 2am1_A 80 VDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAHLLSTRYK---TYKTQG--NYNNEI---GLP--------- 142 (454)
T ss_dssp CSCHHHHHHHHHHHHHHHHCCEEEEEECCCSSSCHHHHHHHHHTTTSC---EEECCT--TCCSTT---HHH---------
T ss_pred ECCHHHHHHHHHHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHHHhcCC---EeecCC--ccCccc---chH---------
Confidence 56788888888732 111167899999999999999999999999995 367886 555544 111
Q ss_pred HHHHHHhhhhhhcCCCCCCCHHHHHHHHHHHHHhhCCCcEEEEecccCCccc---ccccccCCcEEEEcCCCchhHhhhC
Q 048728 116 FWWCYDRLKEKATEDIPMPSYFRFLALLAFKIFTAEQIDVAILEVGLGGRFD---ATNVVQKPVVCGISSLGYDHMEILG 192 (536)
Q Consensus 116 ~~~v~~~l~~~~~~~~~~p~~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D---~tn~i~~P~vaVITnI~~DHld~lG 192 (536)
+++|+ .+.++|++|||+|++++.| .++++ +|+++|||||++||+|+||
T Consensus 143 ------------------~t~~~----------~~~~~d~~VlE~g~~~~~~~~~~~~~~-~p~vaviTNi~~DHld~~g 193 (454)
T 2am1_A 143 ------------------YTVLH----------MPEGTEKLVLEMGQDHLGDIHLLSELA-RPKTAIVTLVGEAHLAFFK 193 (454)
T ss_dssp ------------------HHHHT----------CCTTCCEEEEECCCSSTTHHHHHHHHH-CCSEEEECCCCCSSCTTCC
T ss_pred ------------------HHHhc----------CCCCCcEEEEEcCCCCcchHHHHhCcc-CCCEEEEcCCchHhhhhcC
Confidence 01111 2568999999999998888 77766 7999999999999999999
Q ss_pred CCHHHHHHHHHcccc---CCCceeccCCChHHHHHHHHHhhcCCCCEEEeCC-----C-----C--ccc--c----ccee
Q 048728 193 NTLGEIAGEKAGIFK---YGVPAFTVPQPEEAMRVLEENASKLDVPLQVVPP-----L-----D--ASL--L----NGLK 251 (536)
Q Consensus 193 ~tle~ia~~Ka~I~k---~~~~~v~~~~~~~~~~vl~~~a~~~~~~l~~~~~-----~-----~--~~~--~----~~~~ 251 (536)
|+|+|+++|++||+ +++++|+|.|| ... ..+.. ++++..++. + . ... + ..+.
T Consensus 194 -t~e~~a~aK~~i~~~~~~~~~~V~n~dd-~~~----~~~~~-~~~~~~~g~~~~~d~~~i~~~~~~~~~~~~~~~~~~~ 266 (454)
T 2am1_A 194 -DRSEIAKGKMQIADGMASGSLLLAPADP-IVE----DYLPI-DKKVVRFGQGAELEITDLVERKDSLTFKANFLEQALD 266 (454)
T ss_dssp -CHHHHHHHHGGGGTTCCTTCEEEEESCG-GGG----GGCCS-SSEEEEESTTSSBCEEEEEECSSCEEEEETTCSSEEE
T ss_pred -CHHHHHHHHHHHHhhcccCCEEEEEcHH-HHH----HHHhc-CCcEEEEeCCCCCceeeeEEeCCceEEEEEecCcEEE
Confidence 99999999999998 56788998876 432 22222 333333321 0 0 000 0 1477
Q ss_pred cCCCcHHHHHhHHHHHHHHHHHHHhccccccccCCCCCCChHHHHHHHhcCC-CCCceeEEcCCCCCCCCCCCcEEEEE-
Q 048728 252 LGLEGEHQYMNAGLAVALSSTWLQRTSQLGINYLDTTSPLPEQFIQGLTMAN-LQGRAQIVPDRYTNSETSGDLVFYLD- 329 (536)
Q Consensus 252 l~l~G~hq~~Na~aAia~a~~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~vilD- 329 (536)
++++|.||++|+++|++++..+ | ++++.|.++|++|. ||||||++... ++..+|+|
T Consensus 267 l~l~G~hn~~NalaA~a~~~~l----g-----------i~~~~i~~~L~~~~~~~gR~e~~~~~-------~~~~iiDDs 324 (454)
T 2am1_A 267 LPVTGKYNATNAMIASYVALQE----G-----------VSEEQIRLAFQHLELTRNRTEWKKAA-------NGADILSDV 324 (454)
T ss_dssp ESSCCHHHHHHHHHHHHHHHHT----T-----------CCHHHHHHHGGGCCCCCCCSCEECCT-------TTCEEEEEC
T ss_pred ecCCCHHHHHHHHHHHHHHHHc----C-----------CCHHHHHHHHHhCCCccCCeeEEECC-------CCeEEEEeC
Confidence 8999999999999999999888 5 78899999999996 99999999764 45677777
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCcccCccccCC---CcEEEEEecC---CCCChhhhhH
Q 048728 330 GAHSPESMEICARWFSLAIKEENQQETFDFQPPNSSGSSNGLPQRQHDGKIRKN---SAQILLFNCM---SVRDPQLLLP 403 (536)
Q Consensus 330 ~AHnp~si~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ilvfg~~---~drd~~~~l~ 403 (536)
|||||+|+++++++| +. .+. +|+++|||++ |+++ .+..+
T Consensus 325 yahnp~s~~~~l~~l----~~------------------------------~~~~~~~~~i~V~G~~~e~G~~~-~~~~~ 369 (454)
T 2am1_A 325 YNANPTAMKLILETF----SA------------------------------IPANEGGKKIAVLADMKELGDQS-VQLHN 369 (454)
T ss_dssp SCCSHHHHHHHHHHH----TT------------------------------SCCCSSCEEEEEEECCCCCCTTH-HHHHH
T ss_pred CCCCHHHHHHHHHHH----Hh------------------------------cccccCCCEEEEECCchhcCcHH-HHHHH
Confidence 899999999999944 33 222 6899999997 3343 34446
Q ss_pred HHHHHHHhcCCcccEEEEecCCcccccCCCCCCCCCcchhchhHHHHHHHHHHHhccCccccccccCCCCcccccccccc
Q 048728 404 SLMKTCARHGVYFKKALFVPNASVYNKVGSHALPPTETQIDLSWQFALQRVWENLMLGDKAVEAKNTDNASEDVKDYTEL 483 (536)
Q Consensus 404 ~l~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (536)
.|++.+.+. .+|.+|++.+. .. .+... ....... .
T Consensus 370 ~~~~~~~~~--~~d~vi~~g~~--------------~~-------~i~~~-~~~~~~~--~------------------- 404 (454)
T 2am1_A 370 QMILSLSPD--VLDIVIFYGED--------------IA-------QLAQL-ASQMFPI--G------------------- 404 (454)
T ss_dssp HGGGGCCTT--TCSEEEEEEST--------------TH-------HHHHH-HHHHSCT--T-------------------
T ss_pred HHHHHHHhc--CCCEEEEECcC--------------HH-------HHHHH-Hhhcccc--C-------------------
Confidence 777655432 48999988642 00 01111 1111000 0
Q ss_pred ccCCCCCce---EeCCHHHHHHHHHHHhhhcCCCCceEEEeCchhhHHH
Q 048728 484 SARSCENSA---VFSSLPLAIKWLRDSVQQNQSLRFQVLVTGSLHLIGD 529 (536)
Q Consensus 484 ~~~~~~~~~---v~~si~~Ai~~~~~~~~~~~~~~~~VLvtGSl~LVG~ 529 (536)
....+. +++++++|++++.+.++++ +.|||+||+|+.-+
T Consensus 405 ---~~~~~~~~~~~~~~~~ai~~a~~~a~~g----d~VLv~GS~~~~~e 446 (454)
T 2am1_A 405 ---HVYYFKKTEDQDQFEDLVKQVKESLGAH----DQILLKGSNSMNLA 446 (454)
T ss_dssp ---CEEEEEBSSSCBTHHHHHHHHHHHCCTT----EEEEEESSCCHHHH
T ss_pred ---cceeeecccCCCCHHHHHHHHHHhCCCC----CEEEEEeCCcCCHH
Confidence 000111 4589999999998877554 48999999999755
No 10
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=100.00 E-value=4.5e-44 Score=387.45 Aligned_cols=327 Identities=17% Similarity=0.179 Sum_probs=225.7
Q ss_pred CcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCCC
Q 048728 56 LKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMPS 135 (536)
Q Consensus 56 l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p~ 135 (536)
.++|||||||||||||+||++||+++|++.. +.++|...+... +
T Consensus 118 ~~vI~VTGTnGKTTTt~ml~~iL~~~G~~p~-------------~~igg~~~~~~~----------------------~- 161 (475)
T 1p3d_A 118 RHGIAVAGTHGKTTTTAMISMIYTQAKLDPT-------------FVNGGLVKSAGK----------------------N- 161 (475)
T ss_dssp SEEEEEESSSCHHHHHHHHHHHHHHTTCCCE-------------EEEEEEETTTTE----------------------E-
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhCCCCCE-------------EEECCccccccc----------------------c-
Confidence 5899999999999999999999999998632 123343332110 0
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEecccCCcccccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHccc---cCCCce
Q 048728 136 YFRFLALLAFKIFTAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIF---KYGVPA 212 (536)
Q Consensus 136 ~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~---k~~~~~ 212 (536)
....++|++|+|+| ++|.++...+|+++|||||++||+|+||+|+|+|+++|++++ ++++.+
T Consensus 162 ------------~~~~~~d~~VlE~~---~~~~~~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~~~~~~~ 226 (475)
T 1p3d_A 162 ------------AHLGASRYLIAEAD---ESDASFLHLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLA 226 (475)
T ss_dssp ------------EECCSSSEEEEECC---CTTSGGGGCCCSEEEECCCCCCSGGGGTTCHHHHHHHHHHHHTTSCTTCEE
T ss_pred ------------cccCCCCEEEEEec---CCcCccccccCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHhhCCCCCEE
Confidence 01246899999996 556677766899999999999999999669999999998876 456789
Q ss_pred eccCCChHHHHHHHHHhhc-------CCCCEEEeC----C----CCc----ccccceecCCCcHHHHHhHHHHHHHHHHH
Q 048728 213 FTVPQPEEAMRVLEENASK-------LDVPLQVVP----P----LDA----SLLNGLKLGLEGEHQYMNAGLAVALSSTW 273 (536)
Q Consensus 213 v~~~~~~~~~~vl~~~a~~-------~~~~l~~~~----~----~~~----~~~~~~~l~l~G~hq~~Na~aAia~a~~l 273 (536)
|++.||+....++...... ..+++.... . |.. .....+.++++|.||++|+++|++++..+
T Consensus 227 V~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~hn~~NalaAia~~~~l 306 (475)
T 1p3d_A 227 VMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLLNVPGKHNALNATAALAVAKEE 306 (475)
T ss_dssp EEETTCHHHHHHHHHHCSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTCCEEEEEESSCSHHHHHHHHHHHHHHHHT
T ss_pred EEECCCHHHHHHHHhcCCCEEEEecCCCCcEEEEEEEEcCCceEEEEEECCCeEEEEEEcCccHHHHHHHHHHHHHHHHc
Confidence 9999998776655442110 011222110 0 100 01114778999999999999999999988
Q ss_pred HHhccccccccCCCCCCChHHHHHHHhcCC-CCCceeEEcCCCCCCCCCCCcEEEEECCCCHHHHHHHHHHHHHHHHhhc
Q 048728 274 LQRTSQLGINYLDTTSPLPEQFIQGLTMAN-LQGRAQIVPDRYTNSETSGDLVFYLDGAHSPESMEICARWFSLAIKEEN 352 (536)
Q Consensus 274 l~~~g~~~~~~~~~~~~~~~~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~vilD~AHnp~si~~~l~~~~~~~~~~~ 352 (536)
| ++++.|.++|++|. ||||||++..... .++++.||+||||||++++++++++++.
T Consensus 307 ----g-----------i~~~~i~~~L~~f~~~~gR~e~v~~~~~---~~~~~~vi~DyaHnp~~~~a~l~al~~~----- 363 (475)
T 1p3d_A 307 ----G-----------IANEAILEALADFQGAGRRFDQLGEFIR---PNGKVRLVDDYGHHPTEVGVTIKAAREG----- 363 (475)
T ss_dssp ----T-----------CCHHHHHHHHHTCCCBTTSSEEEEEEEE---TTEEEEEEEECCCSHHHHHHHHHHHHHH-----
T ss_pred ----C-----------CCHHHHHHHHHhCCCCCCCCEEEecccc---cCCCcEEEEeCCCCHHHHHHHHHHHHhh-----
Confidence 5 78899999999996 9999999975200 0014889999999999999999955542
Q ss_pred cccccCCCCCCCCCCCCCCCCcccCccccCCCcEEEEEecCC-CCChhhhhHHHHHHHHhcCCcccEEEEecCCcccccC
Q 048728 353 QQETFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFNCMS-VRDPQLLLPSLMKTCARHGVYFKKALFVPNASVYNKV 431 (536)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg~~~-drd~~~~l~~l~~~~~~~~~~~d~~i~~~~~~~~~~~ 431 (536)
++.+|+++|||+++ +|+.. ....|++.+. .+|.+|+|+. +++
T Consensus 364 ----------------------------~~~~~i~~v~g~~~~~r~~~-~~~~~~~~~~----~~d~vi~t~~----~~~ 406 (475)
T 1p3d_A 364 ----------------------------WGDKRIVMIFQPHRYSRTRD-LFDDFVQVLS----QVDALIMLDV----YAA 406 (475)
T ss_dssp ----------------------------HCSSCEEEEECCBCHHHHHH-THHHHHHHHT----TSSEEEEECC----BCT
T ss_pred ----------------------------cCCCeEEEEECCCCCccHHH-HHHHHHHHHH----hCCEEEEcCC----cCC
Confidence 23468899999753 33332 3366766553 4899999864 222
Q ss_pred CCCCCCCCcchhchhHHHHHHHHHHHhccCccccccccCCCCccccccccccccCCCCCceEeCCHHHHHHHHHHHhhhc
Q 048728 432 GSHALPPTETQIDLSWQFALQRVWENLMLGDKAVEAKNTDNASEDVKDYTELSARSCENSAVFSSLPLAIKWLRDSVQQN 511 (536)
Q Consensus 432 ~~~~~~~~~~~~~~~~q~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~Ai~~~~~~~~~~ 511 (536)
+..+.. ....+ .+.+.+... + ...+..++++++|++++.+.++++
T Consensus 407 ~e~~~~------g~~~~-~l~~~~~~~--~--------------------------~~~~~~~~~~~~ai~~a~~~a~~g 451 (475)
T 1p3d_A 407 GEAPIV------GADSK-SLCRSIRNL--G--------------------------KVDPILVSDTSQLGDVLDQIIQDG 451 (475)
T ss_dssp TCCCCT------TCSHH-HHHHHHHHH--T--------------------------SCCCEEESCGGGHHHHHHHHCCTT
T ss_pred CCCCCC------CCCHH-HHHHHHHhh--C--------------------------CCceEEECCHHHHHHHHHHhCCCC
Confidence 211100 01111 222222211 0 012456799999999998877654
Q ss_pred CCCCceEEEe--CchhhHHHHHH
Q 048728 512 QSLRFQVLVT--GSLHLIGDVLK 532 (536)
Q Consensus 512 ~~~~~~VLvt--GSl~LVG~vl~ 532 (536)
+.|||+ ||+|+||+.|.
T Consensus 452 ----d~VLv~G~Gs~~~v~~~l~ 470 (475)
T 1p3d_A 452 ----DLILAQGAGSVSKISRGLA 470 (475)
T ss_dssp ----CEEEEECSSTHHHHHHHHH
T ss_pred ----CEEEEECCCCHHHHHHHHH
Confidence 389999 99999999874
No 11
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=2.3e-43 Score=381.23 Aligned_cols=317 Identities=15% Similarity=0.125 Sum_probs=218.6
Q ss_pred CCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCcccccc-ceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCC
Q 048728 55 QLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVR-ERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPM 133 (536)
Q Consensus 55 ~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~-Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~ 133 (536)
+.++|||||||||||||+||++||+++|++++.+++|++.+++ ++++++
T Consensus 113 ~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~~~~~~~g~~~~~g~~~~~~~------------------------------ 162 (469)
T 1j6u_A 113 KKEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIMDSLEHGNYEKG------------------------------ 162 (469)
T ss_dssp CCCEEEEECSSSHHHHHHHHHHHHHHTTCCCEEECSSCCTTSTTSSEECC------------------------------
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCeecccCccccccC------------------------------
Confidence 4689999999999999999999999999999999999988877 766532
Q ss_pred CCHHHHHHHHHHHHHhhCCCcEEEEecccCCcccccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHccccCCCcee
Q 048728 134 PSYFRFLALLAFKIFTAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKYGVPAF 213 (536)
Q Consensus 134 p~~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k~~~~~v 213 (536)
+.| +|+|+|+. |.++...+|+++|||||++||+|+||+|+|+|+++|..++.....+|
T Consensus 163 ------------------~~~-~V~E~~~~---~~~~~~~~p~vaviTNI~~DHld~~g~t~e~ia~ak~~~~~~~~~~V 220 (469)
T 1j6u_A 163 ------------------NGP-VVYELDES---EEFFSEFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNTDLVV 220 (469)
T ss_dssp ------------------SSC-EEEEECTT---SGGGGGCCCSEEEECCCCCCCGGGGTTCHHHHHHHHHHHHHTCSEEE
T ss_pred ------------------CCC-EEEECCCc---cCccccccCCEEEEcCCCcchhhhhcCHHHHHHHHHHHHHhhCCEEE
Confidence 245 89999875 45665558999999999999999999669999999988876433677
Q ss_pred ccCCChHHHHHHHHHhhcCC---CCEEE----eC-C---CC----cccccceecCCCcHHHHHhHHHHHHHHHHHHHhcc
Q 048728 214 TVPQPEEAMRVLEENASKLD---VPLQV----VP-P---LD----ASLLNGLKLGLEGEHQYMNAGLAVALSSTWLQRTS 278 (536)
Q Consensus 214 ~~~~~~~~~~vl~~~a~~~~---~~l~~----~~-~---~~----~~~~~~~~l~l~G~hq~~Na~aAia~a~~ll~~~g 278 (536)
++.||+....+ .....+ +++.. .. . |. ...+..+.++++|.||++|+++|++++..+ |
T Consensus 221 ~n~dd~~~~~~---~~~~~g~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~l----g 293 (469)
T 1j6u_A 221 TFAEDELTSHL---GDVTFGVKKGTYTLEMRSASRAEQKAMVEKNGKRYLELKLKVPGFHNVLNALAVIALFDSL----G 293 (469)
T ss_dssp EETTCTTTGGG---CSEEECSSSSSEEEEEEEECSSCEEEEEEETTEEEEEEEESSCSHHHHHHHHHHHHHHHHT----T
T ss_pred EECCChhhccc---eEEEEECCCceEEEEEEECCCCCEEEEEEECCeEEEEEEecCcCHHHHHHHHHHHHHHHHc----C
Confidence 88888754321 000011 12221 10 0 00 001124778999999999999999999988 5
Q ss_pred ccccccCCCCCCChHHHHHHHhcCC-CCCceeEE--cCCCCCCCCCCCcEEEEECCCCHHHHHHHHHHHHHHHHhhcccc
Q 048728 279 QLGINYLDTTSPLPEQFIQGLTMAN-LQGRAQIV--PDRYTNSETSGDLVFYLDGAHSPESMEICARWFSLAIKEENQQE 355 (536)
Q Consensus 279 ~~~~~~~~~~~~~~~~i~~gL~~~~-~pGR~E~v--~~~~~~~~~~~~~~vilD~AHnp~si~~~l~~~~~~~~~~~~~~ 355 (536)
++++.|.++|++|+ ||||||++ ... +++.||+||||||++++++++++++.
T Consensus 294 -----------i~~~~i~~~L~~f~g~~gR~e~v~~~~~-------~g~~vi~D~aHnp~~~~a~l~al~~~-------- 347 (469)
T 1j6u_A 294 -----------YDLAPVLEALEEFRGVHRRFSIAFHDPE-------TNIYVIDDYAHTPDEIRNLLQTAKEV-------- 347 (469)
T ss_dssp -----------CCHHHHHHHHHHCCCCTTSSEEEEEETT-------TTEEEEEECCCSHHHHHHHHHHHHHH--------
T ss_pred -----------CCHHHHHHHHHhCCCCCCCcEEEccccc-------CCcEEEEeCCCCHHHHHHHHHHHHHh--------
Confidence 78899999999997 99999999 443 46899999999999999999955432
Q ss_pred ccCCCCCCCCCCCCCCCCcccCccccCCCcEEEEEecC-CCCChhhhhHHHHHHHHhcCCcccEEEEecCCcccccCCCC
Q 048728 356 TFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFNCM-SVRDPQLLLPSLMKTCARHGVYFKKALFVPNASVYNKVGSH 434 (536)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg~~-~drd~~~~l~~l~~~~~~~~~~~d~~i~~~~~~~~~~~~~~ 434 (536)
++.+|+++|||+. .+|+.. ....|++.+. .+|.+++++.. +++
T Consensus 348 -------------------------~~~~~i~~I~g~g~~~r~~~-~~~~l~~~~~----~~d~vil~~~~----~~~-- 391 (469)
T 1j6u_A 348 -------------------------FENEKIVVIFQPHRYSRLER-EDGNFAKALQ----LADEVVVTEVY----DAF-- 391 (469)
T ss_dssp -------------------------CSSSEEEEEECCBC---------CHHHHHHT----TSSEEEECCCB----C----
T ss_pred -------------------------cCCCcEEEEEcCCCCCccHH-HHHHHHHHHh----cCCEEEEcccC----CCC--
Confidence 3446889999863 234432 2244555442 48999988642 111
Q ss_pred CCCCCcchhchhHHHHHHHHHHHhccCccccccccCCCCccccccccccccCCCCCceEeCCHHHHHHHHHHHhhhcCCC
Q 048728 435 ALPPTETQIDLSWQFALQRVWENLMLGDKAVEAKNTDNASEDVKDYTELSARSCENSAVFSSLPLAIKWLRDSVQQNQSL 514 (536)
Q Consensus 435 ~~~~~~~~~~~~~q~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~Ai~~~~~~~~~~~~~ 514 (536)
+++. .....+ .+.+.+... ...+..++++++|++.+ .+++
T Consensus 392 ---e~p~-~g~~~~-~l~~~~~~~-----------------------------~~~~~~~~~~~~a~~~~--~a~~---- 431 (469)
T 1j6u_A 392 ---EEKK-NGISGK-MIWDSLKSL-----------------------------GKEAYFVEKLPELEKVI--SVSE---- 431 (469)
T ss_dssp -----------CHH-HHHHHHHHT-----------------------------TCCEEECCSGGGHHHHC--CCCS----
T ss_pred ---CCcc-cCcCHH-HHHHHHHhc-----------------------------CCcEEEECCHHHHHHHh--hCCC----
Confidence 1110 001111 222222211 01245678888888765 3332
Q ss_pred CceEEE--eCchhhHHHHHH
Q 048728 515 RFQVLV--TGSLHLIGDVLK 532 (536)
Q Consensus 515 ~~~VLv--tGSl~LVG~vl~ 532 (536)
++.||+ +||+|++|+++.
T Consensus 432 gD~VLv~g~Gs~~~~~~~l~ 451 (469)
T 1j6u_A 432 NTVFLFVGAGDIIYSSRRFV 451 (469)
T ss_dssp SEEEEEECSSTHHHHHHHHH
T ss_pred CCEEEEECCCchhHHHHHHH
Confidence 347888 799999999864
No 12
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=100.00 E-value=1.6e-43 Score=384.62 Aligned_cols=327 Identities=16% Similarity=0.161 Sum_probs=222.5
Q ss_pred CcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCCC
Q 048728 56 LKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMPS 135 (536)
Q Consensus 56 l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p~ 135 (536)
.++|||||||||||||+||++||+++|++.. +.++|...+... +
T Consensus 119 ~~vI~VTGTnGKTTTt~ml~~iL~~~G~~p~-------------~~igg~~~~~~~----------------------~- 162 (491)
T 2f00_A 119 RHGIAIAGTHGKTTTTAMVSSIYAEAGLDPT-------------FVNGGLVKAAGV----------------------H- 162 (491)
T ss_dssp SEEEEEESSSCHHHHHHHHHHHHHHTTCCCE-------------EEEEEEETTTTE----------------------E-
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhCCCCCE-------------EEECCeeccccc----------------------c-
Confidence 5899999999999999999999999998632 123343332110 0
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEecccCCcccccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHcccc---CCCce
Q 048728 136 YFRFLALLAFKIFTAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFK---YGVPA 212 (536)
Q Consensus 136 ~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k---~~~~~ 212 (536)
....++|++|+|+| ++|.++...+|+++|||||++||+|+||+|+|+|+++|++|+. +++.+
T Consensus 163 ------------~~~~~~d~~VlE~~---~~~~~~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~~~~~~~ 227 (491)
T 2f00_A 163 ------------ARLGHGRYLIAEAD---ESDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRA 227 (491)
T ss_dssp ------------EECCSSSEEEEECC---CTTSGGGGCCCSEEEECCCCSCSGGGTTTCHHHHHHHHHHHHTTSCTTCEE
T ss_pred ------------ccCCCCCEEEEEeC---CCccchhcCCCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHHhCCCCCEE
Confidence 01246899999996 5667777668999999999999999996699999999998874 56779
Q ss_pred eccCCChHHHHHHHHHhhcCCCCEEEeCC-------------------CCc----ccccceecCCCcHHHHHhHHHHHHH
Q 048728 213 FTVPQPEEAMRVLEENASKLDVPLQVVPP-------------------LDA----SLLNGLKLGLEGEHQYMNAGLAVAL 269 (536)
Q Consensus 213 v~~~~~~~~~~vl~~~a~~~~~~l~~~~~-------------------~~~----~~~~~~~l~l~G~hq~~Na~aAia~ 269 (536)
|++.||+....++.. .+++++.+.. |.. .....+.++++|.||++|+++|+++
T Consensus 228 V~n~dd~~~~~~~~~----~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~ 303 (491)
T 2f00_A 228 VMCVDDPVIRELLPR----VGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAV 303 (491)
T ss_dssp EEETTSHHHHHHGGG----CCSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTSCCEEEEESSCSHHHHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHh----cCCcEEEEeCCCCCCEEEEEEEEcCCceEEEEEECCceEEEEEEccchHHHHHHHHHHHHH
Confidence 999999876544322 2222222210 100 0111467899999999999999999
Q ss_pred HHHHHHhccccccccCCCCCCChHHHHHHHhcCC-CCCceeEEcCCCCC-CCCCCC-cEEEEECCCCHHHHHHHHHHHHH
Q 048728 270 SSTWLQRTSQLGINYLDTTSPLPEQFIQGLTMAN-LQGRAQIVPDRYTN-SETSGD-LVFYLDGAHSPESMEICARWFSL 346 (536)
Q Consensus 270 a~~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~~~-~pGR~E~v~~~~~~-~~~~~~-~~vilD~AHnp~si~~~l~~~~~ 346 (536)
+..+ | ++++.|.++|++|. ||||||++...... ...+++ +.||+||||||++++++++
T Consensus 304 a~~l----g-----------i~~~~i~~~L~~f~~~~gR~e~v~~~~~~~~~~~~g~~~vi~DyaHnp~~~~a~l~---- 364 (491)
T 2f00_A 304 ATEE----G-----------IDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIK---- 364 (491)
T ss_dssp HHHH----T-----------CCHHHHHHHHHTCCCBTTSSEEEEEEESSSSSSCSSEEEEEEECCCSHHHHHHHHH----
T ss_pred HHHc----C-----------CCHHHHHHHHHhCCCCCCCCEEEccccccccccCCCcEEEEEeCCCCHHHHHHHHH----
Confidence 9998 5 78899999999996 99999999752000 000025 8999999999999999999
Q ss_pred HHHhhccccccCCCCCCCCCCCCCCCCcccCccccCCCcEEEEEecCC-CCChhhhhHHHHHHHHhcCCcccEEEEecCC
Q 048728 347 AIKEENQQETFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFNCMS-VRDPQLLLPSLMKTCARHGVYFKKALFVPNA 425 (536)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg~~~-drd~~~~l~~l~~~~~~~~~~~d~~i~~~~~ 425 (536)
+++.. ++.+|+++|||+++ +|+.. ....|++.+. .+|.+|+|+.
T Consensus 365 al~~~-----------------------------~~~~~i~~v~g~~~~~r~k~-~~~~~~~~~~----~~d~vilt~~- 409 (491)
T 2f00_A 365 AARAG-----------------------------WPDKNLVMLFQPHRFTRTRD-LYDDFANVLT----QVDTLLMLEV- 409 (491)
T ss_dssp HHHTT-----------------------------CCSSEEEEEECCBCHHHHTT-THHHHHHHHT----TSSEEEECCC-
T ss_pred HHHhh-----------------------------cCCCeEEEEECCCCCcchHH-HHHHHHHHHH----hCCEEEEcCC-
Confidence 44431 24467899999743 23322 2356666553 4899998864
Q ss_pred cccccCCCCCCCCCcchhchhHHHHHHHHHHHhccCccccccccCCCCccccccccccccCCCCCceEeCCHHHHHHHHH
Q 048728 426 SVYNKVGSHALPPTETQIDLSWQFALQRVWENLMLGDKAVEAKNTDNASEDVKDYTELSARSCENSAVFSSLPLAIKWLR 505 (536)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~q~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~Ai~~~~ 505 (536)
++++..+... ...+ ++.+.+.. .. ...+..++++++|++++.
T Consensus 410 ---~~~~e~~~~g------~~~~----~l~~~~~~------------------------~~-~~~~~~~~~~~~ai~~a~ 451 (491)
T 2f00_A 410 ---YPAGEAPIPG------ADSR----SLCRTIRG------------------------RG-KIDPILVPDPARVAEMLA 451 (491)
T ss_dssp ---BCSSSCCCTT------SSHH----HHTTC--------------------------------CCEECCCSSCCHHHHG
T ss_pred ---cCCCCCCCCC------CCHH----HHHHHHHh------------------------hC-CCceEEeCCHHHHHHHHH
Confidence 2222111000 0111 11111100 00 012456789999999998
Q ss_pred HHhhhcCCCCceEEEe--CchhhHHHHHHH
Q 048728 506 DSVQQNQSLRFQVLVT--GSLHLIGDVLKI 533 (536)
Q Consensus 506 ~~~~~~~~~~~~VLvt--GSl~LVG~vl~~ 533 (536)
+.++++ +.|||+ ||||+||++|..
T Consensus 452 ~~a~~g----d~VLv~gaGsl~~v~~~l~~ 477 (491)
T 2f00_A 452 PVLTGN----DLILVQGAGNIGKIARSLAE 477 (491)
T ss_dssp GGCCSE----EEEEEECSTTHHHHHHHHHH
T ss_pred HhCCCC----CEEEEECCCCHHHHHHHHHH
Confidence 776544 489999 999999999864
No 13
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=100.00 E-value=1.6e-43 Score=379.58 Aligned_cols=295 Identities=19% Similarity=0.183 Sum_probs=220.6
Q ss_pred CCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCC
Q 048728 55 QLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMP 134 (536)
Q Consensus 55 ~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p 134 (536)
+.++|||||||||||||+||++||+++|++++++++. |.|+++.
T Consensus 103 ~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gni------------g~~~~~~------------------------ 146 (439)
T 2x5o_A 103 QAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNI------------GLPALML------------------------ 146 (439)
T ss_dssp CSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEEESS------------SBCHHHH------------------------
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEeccc------------CHHHHHH------------------------
Confidence 3689999999999999999999999999999988763 4443210
Q ss_pred CHHHHHHHHHHHHHhhCCCcEEEEecccCCcccccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHccccCCCceec
Q 048728 135 SYFRFLALLAFKIFTAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKYGVPAFT 214 (536)
Q Consensus 135 ~~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k~~~~~v~ 214 (536)
+ ..+.|++|+|+|+ +++|.++.+ +|+++|||||++||+|+||+|+|+|+++|++||+.++++|+
T Consensus 147 -------------~-~~~~d~~VlE~~~-~~l~~~~~~-~p~vaviTNI~~DHld~~G~t~e~i~~~K~~i~~~~~~~V~ 210 (439)
T 2x5o_A 147 -------------L-DDECELYVLELSS-FQLETTSSL-QAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVV 210 (439)
T ss_dssp -------------C-CTTCCEEEEECCH-HHHHTCCCC-CCSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGTTCSEEEE
T ss_pred -------------h-CCCCCEEEEECCc-hhhcccccC-CCCEEEEeCCChhhcccccCCHHHHHHHHHHHHcCCCEEEE
Confidence 1 1346999999999 678999886 79999999999999999966999999999999999899999
Q ss_pred cCCChHHHHHHHHHhhcCCCCEEEeCCC----------C----c-cc---ccceecCCCcHHHHHhHHHHHHHHHHHHHh
Q 048728 215 VPQPEEAMRVLEENASKLDVPLQVVPPL----------D----A-SL---LNGLKLGLEGEHQYMNAGLAVALSSTWLQR 276 (536)
Q Consensus 215 ~~~~~~~~~vl~~~a~~~~~~l~~~~~~----------~----~-~~---~~~~~l~l~G~hq~~Na~aAia~a~~ll~~ 276 (536)
|.||+....++. . ++++..+..- + . .. +..+.++++|.||++|+++|++++..+
T Consensus 211 n~dd~~~~~~~~----~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~l--- 282 (439)
T 2x5o_A 211 NADDALTMPIRG----A-DERCVSFGVNMGDYHLNHQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAA--- 282 (439)
T ss_dssp ETTCGGGSCSCC----C-SSCCEEECSSSSSEEEEEETTEEEEEETTEEEEEGGGCSCCSHHHHHHHHHHHHHHHHT---
T ss_pred eCCCHHHHHHhh----c-CCcEEEEeCCCcCcCcEEEECCEEEEeCCcEEEeehhcCCCCHHHHHHHHHHHHHHHHc---
Confidence 999886533221 1 2232222110 0 0 00 112468999999999999999999888
Q ss_pred ccccccccCCCCCCChHHHHHHHhcCC-CCCceeEEcCCCCCCCCCCCcEEEEE-CCCCHHHHHHHHHHHHHHHHhhccc
Q 048728 277 TSQLGINYLDTTSPLPEQFIQGLTMAN-LQGRAQIVPDRYTNSETSGDLVFYLD-GAHSPESMEICARWFSLAIKEENQQ 354 (536)
Q Consensus 277 ~g~~~~~~~~~~~~~~~~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~vilD-~AHnp~si~~~l~~~~~~~~~~~~~ 354 (536)
| ++++.|.++|++|. ||||||++... +++.||+| |||||+|+.++++ .++
T Consensus 283 -g-----------i~~~~i~~~L~~f~~~~gR~e~~~~~-------~~~~vi~Ds~a~np~a~~~al~----~l~----- 334 (439)
T 2x5o_A 283 -G-----------LPRASSLKALTTFTGLPHRFEVVLEH-------NGVRWINDSKATNVGSTEAALN----GLH----- 334 (439)
T ss_dssp -T-----------CCHHHHHHHHHHCCCCTTSSEEEEEE-------TTEEEEECTTCCSHHHHHHHHT----TCC-----
T ss_pred -C-----------CCHHHHHHHHHhCCCCCCceEEEEEE-------CCEEEEEeCCCCCHHHHHHHHH----hCC-----
Confidence 5 78899999999995 99999999764 46789999 8999999999887 211
Q ss_pred cccCCCCCCCCCCCCCCCCcccCccccCCCcEEEEEecCCCC--ChhhhhHHHHHHHHhcCCcccEEEEecCCcccccCC
Q 048728 355 ETFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFNCMSVR--DPQLLLPSLMKTCARHGVYFKKALFVPNASVYNKVG 432 (536)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg~~~dr--d~~~~l~~l~~~~~~~~~~~d~~i~~~~~~~~~~~~ 432 (536)
..+|+++|||++ +| |...+.+.+ .. .+|.++++...
T Consensus 335 ---------------------------~~~~~i~v~g~~-~k~~~~~~~~~~l----~~---~~d~vi~~g~~------- 372 (439)
T 2x5o_A 335 ---------------------------VDGTLHLLLGGD-GKSADFSPLARYL----NG---DNVRLYCFGRD------- 372 (439)
T ss_dssp ---------------------------CSSCEEEEEESB-CTTCCCGGGGGGS----CS---SSEEEEEESTT-------
T ss_pred ---------------------------cCCCEEEEEcCC-CCCCCHHHHHHHH----Hh---hCCEEEEECCC-------
Confidence 125789999985 66 665554332 21 47888887431
Q ss_pred CCCCCCCcchhchhHHHHHHHHHHHhccCccccccccCCCCccccccccccccCCCCCceEeCCHHHHHHHHHHHhhhcC
Q 048728 433 SHALPPTETQIDLSWQFALQRVWENLMLGDKAVEAKNTDNASEDVKDYTELSARSCENSAVFSSLPLAIKWLRDSVQQNQ 512 (536)
Q Consensus 433 ~~~~~~~~~~~~~~~q~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~Ai~~~~~~~~~~~ 512 (536)
.. ++.+ +.. . .+..++++++|++++.+.++++
T Consensus 373 -------~~-----------~~~~-~~~---------------------------~-~~~~~~~~~~a~~~~~~~~~~g- 404 (439)
T 2x5o_A 373 -------GA-----------QLAA-LRP---------------------------E-VAEQTETMEQAMRLLAPRVQPG- 404 (439)
T ss_dssp -------HH-----------HHHT-TSG---------------------------G-GEEECSSHHHHHHHHGGGCCTT-
T ss_pred -------HH-----------HHHH-Hhc---------------------------C-CccccCCHHHHHHHHHHhCCCC-
Confidence 00 1111 111 0 1346789999999988766544
Q ss_pred CCCceEEE---eCchhhHHHH
Q 048728 513 SLRFQVLV---TGSLHLIGDV 530 (536)
Q Consensus 513 ~~~~~VLv---tGSl~LVG~v 530 (536)
+.||| |||+|++...
T Consensus 405 ---d~vL~~~a~~S~~~~~~~ 422 (439)
T 2x5o_A 405 ---DMVLLSPACASLDQFKNF 422 (439)
T ss_dssp ---CEEEECCSSBSTTTSSSH
T ss_pred ---CEEEEcchhhHhhhhhCH
Confidence 48999 9999998653
No 14
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=100.00 E-value=1.7e-41 Score=368.89 Aligned_cols=325 Identities=17% Similarity=0.156 Sum_probs=220.2
Q ss_pred CcEEEEcCCCchhHHHHHHHHHHHhCCCCE-EEEeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCC
Q 048728 56 LKVIHVAGTKGKGSTCTFTESILRNCGFRT-GLFTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMP 134 (536)
Q Consensus 56 l~vI~VTGTnGKTST~~ml~~IL~~~G~k~-g~~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p 134 (536)
.++|+||||||||||++||++||+++|+++ .+.+.. +..+ |. +
T Consensus 122 ~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~~gg~-~~~~-------g~----------------------------~ 165 (494)
T 4hv4_A 122 RHGIAVAGTHGKTTTTAMLSSIYAEAGLDPTFVNGGL-VKAA-------GT----------------------------H 165 (494)
T ss_dssp SEEEEEECSSSHHHHHHHHHHHHHHTTCCCEEEEEEE-ETTT-------TE----------------------------E
T ss_pred CCEEEEecCCChHHHHHHHHHHHHhcCCCCEEEECCc-cccc-------cc----------------------------c
Confidence 479999999999999999999999999864 332221 0000 00 0
Q ss_pred CHHHHHHHHHHHHHhhCCCcEEEEecccCCcccccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHccccC---CCc
Q 048728 135 SYFRFLALLAFKIFTAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKY---GVP 211 (536)
Q Consensus 135 ~~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k~---~~~ 211 (536)
..-.+.|++|+|+|..+ .++...+|+++|||||++||+|+||+|+|+|+++|++|++. ++.
T Consensus 166 -------------~~~~~~d~~VlE~~e~~---~s~~~~~P~iaVITNI~~DHld~~G~t~e~~a~aK~~i~~~~~~~g~ 229 (494)
T 4hv4_A 166 -------------ARLGSSRYLIAEADESD---ASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGR 229 (494)
T ss_dssp -------------EECCSSSEEEEECCCGG---GGGGGCCCSEEEECCCCCSSCCSSTTHHHHHHHHHHHHHTTSCTTCE
T ss_pred -------------cccCCCcEEEEEccccc---cccccccCCEEEEcCCCHHHhhhhccCHHHHHHHHHHHHhcCCCCCE
Confidence 01135899999998643 34444589999999999999999966999999999999975 467
Q ss_pred eeccCCChHHHHHHHHHhhcCCCCEEEeCC-------------------CC----cccccceecCCCcHHHHHhHHHHHH
Q 048728 212 AFTVPQPEEAMRVLEENASKLDVPLQVVPP-------------------LD----ASLLNGLKLGLEGEHQYMNAGLAVA 268 (536)
Q Consensus 212 ~v~~~~~~~~~~vl~~~a~~~~~~l~~~~~-------------------~~----~~~~~~~~l~l~G~hq~~Na~aAia 268 (536)
+|++.||+....++.. ..+++..+.. |. ......+.++++|.||++|+++|++
T Consensus 230 ~V~n~dd~~~~~~~~~----~~~~~~~~g~~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~hnv~NalaAia 305 (494)
T 4hv4_A 230 AVMCIDDPVVRELLPR----VGRHITTYGFSDDADVQIASYRQEGPQGHFTLRRQDKPLIEVTLNAPGRHNALNAAAAVA 305 (494)
T ss_dssp EEEETTSHHHHHHGGG----CCSCEEEEESSTTCSEEEEEEEEETTEEEEEEECTTSCCEEEEESSCSHHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHh----cCCCEEEEecCCCCceEEEEEEEeCCEEEEEEEECCceEEEEEecCCcHHHHHHHHHHHH
Confidence 8999999876544322 2233222210 00 0012247889999999999999999
Q ss_pred HHHHHHHhccccccccCCCCCCChHHHHHHHhcCC-CCCceeEEcCCCCC--CCCCCCcEEEEECCCCHHHHHHHHHHHH
Q 048728 269 LSSTWLQRTSQLGINYLDTTSPLPEQFIQGLTMAN-LQGRAQIVPDRYTN--SETSGDLVFYLDGAHSPESMEICARWFS 345 (536)
Q Consensus 269 ~a~~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~~~-~pGR~E~v~~~~~~--~~~~~~~~vilD~AHnp~si~~~l~~~~ 345 (536)
++..+ | ++++.|.++|++|+ ||||||++...... ...++++.||+||||||++++++++.++
T Consensus 306 ~a~~l----g-----------i~~~~i~~~L~~f~g~~~R~e~v~~~~~~~~~~~~~g~~vi~DyaHnp~~i~a~l~al~ 370 (494)
T 4hv4_A 306 VATEE----G-----------IEDEDILRALVGFQGTGRRFDFLGNFPLAPVNGKEGSAMLVDDYGHHPTEVDATIKAAR 370 (494)
T ss_dssp HHHHH----T-----------CCHHHHHHHHHHCCCBTTSSEEEEEEESHHHHSCSSEEEEEEECCCSHHHHHHHHHHHH
T ss_pred HHHHc----C-----------CCHHHHHHHHHhCCCCCCccEEeeeccccccccCCCCeEEEEeCCCCHHHHHHHHHHHH
Confidence 99998 5 78899999999996 99999999641000 0000258999999999999999999544
Q ss_pred HHHHhhccccccCCCCCCCCCCCCCCCCcccCccccCCCcEEEEEecCCCCChhhhhHHHHHHHHhcCCcccEEEEecCC
Q 048728 346 LAIKEENQQETFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFNCMSVRDPQLLLPSLMKTCARHGVYFKKALFVPNA 425 (536)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg~~~drd~~~~l~~l~~~~~~~~~~~d~~i~~~~~ 425 (536)
+. ++.+|+++|||+..++....+...+++... .+|.+|+++..
T Consensus 371 ~~---------------------------------~~~~rii~V~g~~~~~r~k~~~~~~~~~~~----~aD~vilt~~~ 413 (494)
T 4hv4_A 371 AG---------------------------------WPDKRIVMLFQPHRYTRTRDLYDDFANVLS----QVDVLLMLDVY 413 (494)
T ss_dssp HH---------------------------------CTTSEEEEEECCBCHHHHHHTHHHHHHHHT----TSSEEEEECCB
T ss_pred hh---------------------------------cCCCeEEEEEcCCCCCchHHHHHHHHHHHh----cCCEEEEeCCc
Confidence 32 345689999987543322333445554442 48999998642
Q ss_pred cccccCCCCCCCCCcchhchhHHHHHHHHHHHhccCccccccccCCCCccccccccccccCCCCCceEeCCHHHHHHHHH
Q 048728 426 SVYNKVGSHALPPTETQIDLSWQFALQRVWENLMLGDKAVEAKNTDNASEDVKDYTELSARSCENSAVFSSLPLAIKWLR 505 (536)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~q~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~Ai~~~~ 505 (536)
+++..+. .....+ .+.+.+... + ..++..++++++|++++.
T Consensus 414 ----~~~e~p~------~g~~~~-~l~~~~~~~--g--------------------------~~~~~~~~~~~eAv~~a~ 454 (494)
T 4hv4_A 414 ----AAGEPPI------PGADSR-ALCRTIRNR--G--------------------------KLDPILVPDSESAPEMLA 454 (494)
T ss_dssp ----CTTCCCC------TTCSHH-HHHHHHHTT--T--------------------------SCCCEEECCTTTHHHHHH
T ss_pred ----CCccCCc------CCccHH-HHHHHHHhh--C--------------------------CCCeEEeCCHHHHHHHHH
Confidence 2221110 001111 122222111 0 013567899999999998
Q ss_pred HHhhhcCCCCceEEEeC--chhhHHHHH
Q 048728 506 DSVQQNQSLRFQVLVTG--SLHLIGDVL 531 (536)
Q Consensus 506 ~~~~~~~~~~~~VLvtG--Sl~LVG~vl 531 (536)
+.++++ +.||++| |+|.+|+.+
T Consensus 455 ~~a~~g----DvVL~~GaG~~~~~~~~l 478 (494)
T 4hv4_A 455 QILNGE----DLILVQGAGNIGKIARKL 478 (494)
T ss_dssp HHCCTT----EEEEEECSSTHHHHHHHH
T ss_pred HhCCCC----CEEEEECCCCHHHHHHHH
Confidence 877654 3899987 999999865
No 15
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=100.00 E-value=1.2e-40 Score=358.30 Aligned_cols=291 Identities=16% Similarity=0.164 Sum_probs=213.4
Q ss_pred CCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCC
Q 048728 55 QLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMP 134 (536)
Q Consensus 55 ~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p 134 (536)
+.++|+||||||||||+.||++||++.|+++.+.++. |.|+...
T Consensus 111 ~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gni------------g~~~~~~------------------------ 154 (451)
T 3lk7_A 111 ESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGNI------------GFPASEV------------------------ 154 (451)
T ss_dssp CSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEEETS------------SSCHHHH------------------------
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEeeec------------Chhhhhh------------------------
Confidence 3489999999999999999999999999988665543 3332110
Q ss_pred CHHHHHHHHHHHHHhhCCCcEEEEecccCCcccccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHccccCCC---c
Q 048728 135 SYFRFLALLAFKIFTAEQIDVAILEVGLGGRFDATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFKYGV---P 211 (536)
Q Consensus 135 ~~fe~lt~la~~~f~~~~~d~aVlEvg~gg~~D~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k~~~---~ 211 (536)
.....+.|++|+|+|+++ ++.++.+ +|+++|||||++||+|+|| |+|+|+++|++||+... .
T Consensus 155 ------------~~~~~~~d~~VlE~~s~~-l~~~~~~-~p~iaviTNI~~DHld~~g-t~e~i~~aK~~i~~~~~~~~~ 219 (451)
T 3lk7_A 155 ------------VQAANDKDTLVMELSSFQ-LMGVKEF-RPHIAVITNLMPTHLDYHG-SFEDYVAAKWNIQNQMSSSDF 219 (451)
T ss_dssp ------------TTTCCTTCEEEEECCHHH-HTTCSSC-CCSEEEECCCCSCCHHHHS-SHHHHHHHHHGGGTTCCTTSE
T ss_pred ------------hhcCCCCCEEEEECCccc-ccccccc-CCCEEEEcCCChhHhhhcC-CHHHHHHHHHHHHhcCCCCCE
Confidence 001236899999999975 6778776 8999999999999999999 99999999999998644 4
Q ss_pred eeccCCChHHHHHHHHHhhcCCCCEEEeCCC-C--------------cc-cccceecCCCcHHHHHhHHHHHHHHHHHHH
Q 048728 212 AFTVPQPEEAMRVLEENASKLDVPLQVVPPL-D--------------AS-LLNGLKLGLEGEHQYMNAGLAVALSSTWLQ 275 (536)
Q Consensus 212 ~v~~~~~~~~~~vl~~~a~~~~~~l~~~~~~-~--------------~~-~~~~~~l~l~G~hq~~Na~aAia~a~~ll~ 275 (536)
+|+|.||+....+ +.+.++++..+..- . .. ....+.++++|.||++|+++|++++..+
T Consensus 220 ~V~n~dd~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~l-- 293 (451)
T 3lk7_A 220 LVLNFNQGISKEL----AKTTKATIVPFSTTEKVDGAYVQDKQLFYKGENIMSVDDIGVPGSHNVENALATIAVAKLA-- 293 (451)
T ss_dssp EEEETTSHHHHHH----HTTCSSEEEEEESSSCCSSEEEETTEEEETTEEEEEGGGSSSCSHHHHHHHHHHHHHHHHH--
T ss_pred EEEECCcHHHHHH----HhhcCCeEEEEccCCCcCCEEEECCEEEECCcEEeeccccCCCcHHHHHHHHHHHHHHHHc--
Confidence 8999999876443 33334444433210 0 00 0123578999999999999999999998
Q ss_pred hccccccccCCCCCCChHHHHHHHhcCC-CCCceeEEcCCCCCCCCCCCcEEEEE-CCCCHHHHHHHHHHHHHHHHhhcc
Q 048728 276 RTSQLGINYLDTTSPLPEQFIQGLTMAN-LQGRAQIVPDRYTNSETSGDLVFYLD-GAHSPESMEICARWFSLAIKEENQ 353 (536)
Q Consensus 276 ~~g~~~~~~~~~~~~~~~~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~vilD-~AHnp~si~~~l~~~~~~~~~~~~ 353 (536)
| ++++.|.++|++|+ ||||||++... +++.||+| +||||+|+.++++ .
T Consensus 294 --g-----------i~~~~i~~~L~~f~~~~gR~e~v~~~-------~g~~vi~D~~a~np~a~~~al~----~------ 343 (451)
T 3lk7_A 294 --G-----------ISNQVIRETLSNFGGVKHRLQSLGKV-------HGISFYNDSKSTNILATQKALS----G------ 343 (451)
T ss_dssp --T-----------CCHHHHHHHHHHCCCCTTSSEEEEEE-------TTEEEEECTTCCSHHHHHHHHH----T------
T ss_pred --C-----------CCHHHHHHHHHhCCCCCCcEEEEeee-------CCcEEEEeCCCCCHHHHHHHHH----h------
Confidence 5 78899999999995 99999999765 46899999 6999999999876 2
Q ss_pred ccccCCCCCCCCCCCCCCCCcccCccccCCCcEEEEEecCC-CCChhhhhHHHHHHHHhcCCcccEEEEecCCcccccCC
Q 048728 354 QETFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFNCMS-VRDPQLLLPSLMKTCARHGVYFKKALFVPNASVYNKVG 432 (536)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg~~~-drd~~~~l~~l~~~~~~~~~~~d~~i~~~~~~~~~~~~ 432 (536)
++.+|+++|||.+. ++|...+.+.+ . .+|.++++...
T Consensus 344 ---------------------------~~~~rii~I~g~~~r~~d~~~l~~~l----~----~~d~vi~~G~~------- 381 (451)
T 3lk7_A 344 ---------------------------FDNTKVILIAGGLDRGNEFDELIPDI----T----GLKHMVVLGES------- 381 (451)
T ss_dssp ---------------------------SCGGGEEEEECCSCCSCCCGGGHHHH----T----TCSEEEECSTT-------
T ss_pred ---------------------------CCCCCEEEEECCCCCCCCHHHHHHHH----H----hcCEEEEECCC-------
Confidence 23346889998753 56776665433 2 27888876321
Q ss_pred CCCCCCCcchhchhHHHHHHHHHHHhccCccccccccCCCCccccccccccccCCCCCceEeCCHHHHHHHHHHHhhhcC
Q 048728 433 SHALPPTETQIDLSWQFALQRVWENLMLGDKAVEAKNTDNASEDVKDYTELSARSCENSAVFSSLPLAIKWLRDSVQQNQ 512 (536)
Q Consensus 433 ~~~~~~~~~~~~~~~q~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~Ai~~~~~~~~~~~ 512 (536)
. ..+.+.+... ...+..++++++|++++.+.+++++
T Consensus 382 -------~--------~~l~~~~~~~-----------------------------g~~~~~~~~~~eAv~~a~~~a~~gD 417 (451)
T 3lk7_A 382 -------A--------SRVKRAAQKA-----------------------------GVTYSDALDVRDAVHKAYEVAQQGD 417 (451)
T ss_dssp -------H--------HHHHHHHHHT-----------------------------TCCEEECSSHHHHHHHHHHHCCTTC
T ss_pred -------H--------HHHHHHHHhc-----------------------------CCceEEeCCHHHHHHHHHHhCCCCC
Confidence 0 1122222211 1135678999999999988776544
Q ss_pred CCCceEEEeC
Q 048728 513 SLRFQVLVTG 522 (536)
Q Consensus 513 ~~~~~VLvtG 522 (536)
.||++|
T Consensus 418 ----~VLlsp 423 (451)
T 3lk7_A 418 ----VILLSP 423 (451)
T ss_dssp ----EEEECC
T ss_pred ----EEEEcC
Confidence 899884
No 16
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=100.00 E-value=3.4e-40 Score=360.97 Aligned_cols=337 Identities=16% Similarity=0.168 Sum_probs=215.3
Q ss_pred CCCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCee---cCHHHHHHHHHHHHHhhhhhhcCC
Q 048728 54 SQLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDD---ISEDKFLAYFWWCYDRLKEKATED 130 (536)
Q Consensus 54 ~~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~---is~~~f~~~~~~v~~~l~~~~~~~ 130 (536)
...++|+||||||||||++|+++||+++|++++.+. +|.+ -+.+.|... +.....-.
T Consensus 120 ~~~~vIaVTGTnGKTTTt~li~~iL~~~G~~~~~~i-------------Gg~~~~~~T~~nln~~-------ig~~~~~~ 179 (524)
T 3hn7_A 120 QSRHVIAVAGTHGKTTTTTMLAWILHYAGIDAGFLI-------------GGVPLVNTTDTNLQQV-------FAHSSYLG 179 (524)
T ss_dssp GGSEEEEEECSSCHHHHHHHHHHHHHHTTCCCEEEC-------------SCCBCCCSSCHHHHHH-------TTSSEECC
T ss_pred ccCcEEEEECCCCHHHHHHHHHHHHHHcCCCceEEE-------------CCEeccccCchhhhhh-------hhhHHhhC
Confidence 346899999999999999999999999999886431 1211 011111100 00000000
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcEEEEecccCC--cccc-ccc-ccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHccc
Q 048728 131 IPMPSYFRFLALLAFKIFTAEQIDVAILEVGLGG--RFDA-TNV-VQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIF 206 (536)
Q Consensus 131 ~~~p~~fe~lt~la~~~f~~~~~d~aVlEvg~gg--~~D~-tn~-i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~ 206 (536)
....++ ..+.++|++|+|+|+.. ..+. +.+ ..+|+++|||||++||+|+|| |+|+|+++|+.||
T Consensus 180 ~~~~~~-----------~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~iaViTNI~~DHLd~~g-s~e~y~~aK~~i~ 247 (524)
T 3hn7_A 180 TEKDDS-----------DNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFA-DLDAIQTQFHHMV 247 (524)
T ss_dssp CCCCSS-----------CTTCCCCEEEEECCSCCCBTTBCCCHHHHCCCSEEEECCCCCC-------CHHHHHHHHHHHH
T ss_pred CCcccc-----------cccccCcEEEEECCCCCccccccccceeeecCCEEEEcCCChHHccccC-CHHHHHHHHHHHH
Confidence 000000 01234689999999843 2221 111 128999999999999999999 9999999999999
Q ss_pred c---CCCceeccCCChHHHHHHHHHhhc----------------------------CCCCEEEe--CC----CC----cc
Q 048728 207 K---YGVPAFTVPQPEEAMRVLEENASK----------------------------LDVPLQVV--PP----LD----AS 245 (536)
Q Consensus 207 k---~~~~~v~~~~~~~~~~vl~~~a~~----------------------------~~~~l~~~--~~----~~----~~ 245 (536)
+ +++.+|+|.||+....++...+.. ..+++... .. |. ..
T Consensus 248 ~~~~~~g~~VlN~DD~~~~~~~~~~~~~~v~~fg~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~~~g~~f~l~~~~~ 327 (524)
T 3hn7_A 248 RMIPSTGKIIMPAATISLEDTLAKGVWTPIWRTSVIDSTISSVRREDSPLENSQAENSSDWQAELISADGSQFTVSFNDN 327 (524)
T ss_dssp TTSCTTSEEEEESSCHHHHHHHHTCCCSCEEEEEEEC-------------------CCCSEEEEEEETTTTEEEEEETTE
T ss_pred HhCCCCCEEEEECCCHHHHHHHHhccCCcEEEEecCcccccccccccccccccccCCCCcEEEEEEECCceEEEEEECCc
Confidence 7 456789999998765544321110 01122110 00 00 00
Q ss_pred c--ccceecCCCcHHHHHhHHHHHHHHHHHHHhccccccccCCCCCCChHHHHHHHhcCC-CCCceeEEcCCCCCCCCCC
Q 048728 246 L--LNGLKLGLEGEHQYMNAGLAVALSSTWLQRTSQLGINYLDTTSPLPEQFIQGLTMAN-LQGRAQIVPDRYTNSETSG 322 (536)
Q Consensus 246 ~--~~~~~l~l~G~hq~~Na~aAia~a~~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~ 322 (536)
. ...+.++++|.||++|+++|++++..+ | ++++.|.++|++|. ||||||++... +
T Consensus 328 ~~~~~~~~l~l~G~hn~~NalaA~a~~~~l----g-----------i~~~~i~~~L~~~~~~~gR~e~~~~~-------~ 385 (524)
T 3hn7_A 328 KEATALVNWSMSGLHNVNNALVAIAAAYNI----G-----------VSVKTACAALSAFAGIKRRMELIGDV-------N 385 (524)
T ss_dssp EEEEEEEECSCCSHHHHHHHHHHHHHHHHT----T-----------CCHHHHHHHHHTCCCBTTSSEEEEEE-------T
T ss_pred cceeEEEEeCCCcHHHHHhHHHHHHHHHHc----C-----------CCHHHHHHHHHhCCCCCceEEEEEec-------C
Confidence 0 134688999999999999999999888 5 78899999999996 99999999764 4
Q ss_pred CcEEEEECCCCHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCcccCccccCCCcEEEEEecCC----CCCh
Q 048728 323 DLVFYLDGAHSPESMEICARWFSLAIKEENQQETFDFQPPNSSGSSNGLPQRQHDGKIRKNSAQILLFNCMS----VRDP 398 (536)
Q Consensus 323 ~~~vilD~AHnp~si~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvfg~~~----drd~ 398 (536)
++.||+|+||||++++++++++++. ++.+|+++|||+++ +++.
T Consensus 386 g~~vi~D~ahnp~~~~a~l~~l~~~---------------------------------~~~~r~i~V~g~~~~~~~~g~~ 432 (524)
T 3hn7_A 386 DILVFDDFAHHPTAITTTLDGAKKK---------------------------------LADRRLWAIIEPRSNTMKMGIH 432 (524)
T ss_dssp TEEEEEECCCSHHHHHHHHHHHHHH---------------------------------HTTSCEEEEEECCCCSSCCSCC
T ss_pred CcEEEEECCCCHHHHHHHHHHHHhh---------------------------------cCCCCEEEEECCCCcchhhhhh
Confidence 6899999999999999999955542 24568999999953 3444
Q ss_pred hhhhHHHHHHHHhcCCcccEEEEecCCcccccCCCCCCCCCcchhchhHHHHHHHHHHHhccCccccccccCCCCccccc
Q 048728 399 QLLLPSLMKTCARHGVYFKKALFVPNASVYNKVGSHALPPTETQIDLSWQFALQRVWENLMLGDKAVEAKNTDNASEDVK 478 (536)
Q Consensus 399 ~~~l~~l~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 478 (536)
.+.+. ..+ + .+|.+|++++. +++ .+. + ++.+.+..+..
T Consensus 433 ~~~~~---~~~-~---~aD~vil~~~~----~r~-----~~~-------~----~l~~~~~~~~~--------------- 470 (524)
T 3hn7_A 433 QDSLA---QSA-T---LADHTLWYEPT----GLE-----WGL-------K----EVIDNATIANP--------------- 470 (524)
T ss_dssp TTHHH---HHT-T---TSSEEEEECCT----TCC-----CSH-------H----HHHHHHHHHCG---------------
T ss_pred HHHHH---HHH-h---cCCEEEEcCCC----CCC-----CCH-------H----HHHHHHHhhcc---------------
Confidence 44432 222 2 58999988631 111 111 1 12222211000
Q ss_pred cccccccCCCCCceEeCCHHHHHHHHHHHhhhcCCCCceEEEeC--chhhHHHHH
Q 048728 479 DYTELSARSCENSAVFSSLPLAIKWLRDSVQQNQSLRFQVLVTG--SLHLIGDVL 531 (536)
Q Consensus 479 ~~~~~~~~~~~~~~v~~si~~Ai~~~~~~~~~~~~~~~~VLvtG--Sl~LVG~vl 531 (536)
....+..++++++|++++.+.+++++ .|||+| |+|.|+.-+
T Consensus 471 --------~~~~~~~~~~~~eai~~~~~~a~~gD----~VLv~GaG~~~~v~~~~ 513 (524)
T 3hn7_A 471 --------SIGSQQVLSSVDDIIKHICTHAKAGD----AIVIMSNGGFEGIHQRL 513 (524)
T ss_dssp --------GGCCEEEESCHHHHHHHHHHHCCTTC----EEEEEESSCGGGHHHHH
T ss_pred --------CCCCeEEECCHHHHHHHHHHhCCCCC----EEEEEcCCCHHHHHHHH
Confidence 01146788999999999998776544 899984 999998854
No 17
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=99.96 E-value=1.5e-28 Score=253.50 Aligned_cols=193 Identities=19% Similarity=0.189 Sum_probs=136.8
Q ss_pred CCcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCHHHHHHHHHHHHHhhhhhhcCCCCCC
Q 048728 55 QLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISEDKFLAYFWWCYDRLKEKATEDIPMP 134 (536)
Q Consensus 55 ~l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~~~f~~~~~~v~~~l~~~~~~~~~~p 134 (536)
..++|+||||||||||++||.+||+++|++++++...-..+++....+ |.|.+
T Consensus 107 ~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~~g~~~~n~~~~~~~-~~p~~-------------------------- 159 (326)
T 3eag_A 107 HHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFGVSARL-PQTPR-------------------------- 159 (326)
T ss_dssp GSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEECSSEETTSSCSEEC-CCCCS--------------------------
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEecceeccCCcceec-CCccc--------------------------
Confidence 468999999999999999999999999998864321101111111111 11110
Q ss_pred CHHHHHHHHHHHHHhhCCCcEEEEecccCC--cc----cccccccCCcEEEEcCCCchhHhhhCCCHHHHHHHHHcccc-
Q 048728 135 SYFRFLALLAFKIFTAEQIDVAILEVGLGG--RF----DATNVVQKPVVCGISSLGYDHMEILGNTLGEIAGEKAGIFK- 207 (536)
Q Consensus 135 ~~fe~lt~la~~~f~~~~~d~aVlEvg~gg--~~----D~tn~i~~P~vaVITnI~~DHld~lG~tle~ia~~Ka~I~k- 207 (536)
. ....+.|++|+|+|+.. .. +...+ +|+++|||||++||+|+|| |+|+|+++|++||+
T Consensus 160 --~----------~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~--~P~vaviTNI~~DHLd~~g-s~e~y~~aK~~i~~~ 224 (326)
T 3eag_A 160 --Q----------DPNSQSPFFVIEADEYDTAFFDKRSKFVHY--RPRTAVLNNLEFDHADIFA-DLGAIQTQFHYLVRT 224 (326)
T ss_dssp --S----------CTTSCCCEEEEECCCSEEETTEEEEGGGGS--CCSEEEECCCCCCCTTTSS-SHHHHHHHHHHHHTT
T ss_pred --c----------ccCCCCCEEEEEccccccchhhcccceeEe--cCCEEEECCCcHHHHhhcC-CHHHHHHHHHHHHHh
Confidence 0 13467899999999842 22 12233 8999999999999999999 99999999999998
Q ss_pred --CCCceeccCCChHHHHHHHHHhhcCCCCEEEeCC----------CCc--------ccccceecCCCcHHHHHhHHHHH
Q 048728 208 --YGVPAFTVPQPEEAMRVLEENASKLDVPLQVVPP----------LDA--------SLLNGLKLGLEGEHQYMNAGLAV 267 (536)
Q Consensus 208 --~~~~~v~~~~~~~~~~vl~~~a~~~~~~l~~~~~----------~~~--------~~~~~~~l~l~G~hq~~Na~aAi 267 (536)
+++.+|+|.||+....++... ..+++..+.. .+. .....+.++++|.||++|+++|+
T Consensus 225 ~~~~~~~V~n~Dd~~~~~~~~~~---~~~~~~~~g~~~d~~~~~~~~~g~f~~~~~~~~~~~~~l~l~G~hNv~NalaAi 301 (326)
T 3eag_A 225 VPSEGLIVCNGRQQSLQDTLDKG---CWTPVEKFGTEHGWQAGEANADGSFDVLLDGKTAGRVKWDLMGRHNRMNALAVI 301 (326)
T ss_dssp SCTTSEEEEESSCHHHHHHHTTC---CCSCEEEESSSSSEEEEEECTTSCEEEEETTEEEEEECCCCCSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCHHHHHHHhhc---cCCCEEEECCCCcEEEEEecCCcEEEEEECCceEEEEEecCCcHHHHHHHHHHH
Confidence 567899999998765544321 1222222210 000 01124778999999999999999
Q ss_pred HHHHHHHHhccccccccCCCCCCChHHHHHHHhcCCCCCc
Q 048728 268 ALSSTWLQRTSQLGINYLDTTSPLPEQFIQGLTMANLQGR 307 (536)
Q Consensus 268 a~a~~ll~~~g~~~~~~~~~~~~~~~~i~~gL~~~~~pGR 307 (536)
+++..+ | ++++.|.++|++|+...|
T Consensus 302 a~a~~l----G-----------i~~~~i~~~L~~f~gv~R 326 (326)
T 3eag_A 302 AAARHV----G-----------VDIQTACEALGAFKNVKR 326 (326)
T ss_dssp HHHHHH----T-----------CCHHHHHHHHHTCCCEEC
T ss_pred HHHHHc----C-----------CCHHHHHHHHHhCCCCCC
Confidence 999998 5 788999999999975444
No 18
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=99.59 E-value=8.6e-15 Score=135.79 Aligned_cols=139 Identities=12% Similarity=0.086 Sum_probs=80.5
Q ss_pred HHHHHHHhcCC-CCCceeEEcCCCCCCCCCCCcEEEEECCCCHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCC
Q 048728 293 EQFIQGLTMAN-LQGRAQIVPDRYTNSETSGDLVFYLDGAHSPESMEICARWFSLAIKEENQQETFDFQPPNSSGSSNGL 371 (536)
Q Consensus 293 ~~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~vilD~AHnp~si~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (536)
+.|.++|++|. ++||||++... +++.||+||||||+|++++++.+++.
T Consensus 12 ~~i~~~L~~f~gv~~R~E~i~~~-------~g~~vi~DyaHnP~si~a~l~al~~~------------------------ 60 (163)
T 3mvn_A 12 DLGTENLYFQSNAQRRLEVKGVV-------NNITVYDDFAHHPTAITATIDALRAK------------------------ 60 (163)
T ss_dssp ---------------CCEEEEEE-------TTEEEEEECCCSHHHHHHHHHHHHHH------------------------
T ss_pred HHHHHHHHhCCCCCCCeEEEecC-------CCcEEEEcCCCCHHHHHHHHHHHHHh------------------------
Confidence 67999999995 99999999765 57999999999999999999954432
Q ss_pred CCcccCccccCCCcEEEEEecCCC--CChhhhhHHHHHHHHhcCCcccEEEEecCCcccccCCCCCCCCCcchhchhHHH
Q 048728 372 PQRQHDGKIRKNSAQILLFNCMSV--RDPQLLLPSLMKTCARHGVYFKKALFVPNASVYNKVGSHALPPTETQIDLSWQF 449 (536)
Q Consensus 372 ~~~~~~~~~~~~~~~ilvfg~~~d--rd~~~~l~~l~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 449 (536)
++.+|+++||++.++ |+. .+...+++.+. .+|.+|+++.. . .+.
T Consensus 61 ---------~~~~riivvf~~g~~s~r~k-~~~~~~~~~~~----~aD~vi~~~~~------~---~~~----------- 106 (163)
T 3mvn_A 61 ---------VGQQRILAVLEPRSNTMKMG-VHKHELATSLQ----DADSVFIYQPP------T---IEW----------- 106 (163)
T ss_dssp ---------HTTSCEEEEECCC----------CHHHHHHHT----TCSEEEEECC-------------C-----------
T ss_pred ---------cCCCcEEEEECCCCcchhhH-HHHHHHHHHHh----cCCEEEEECCC------C---ccc-----------
Confidence 345789999998765 332 33366666542 48999987421 0 010
Q ss_pred HHHHHHHHhccCccccccccCCCCccccccccccccCCCCCceEeCCHHHHHHHHHHHhhhcCCCCceEEEeCch--hhH
Q 048728 450 ALQRVWENLMLGDKAVEAKNTDNASEDVKDYTELSARSCENSAVFSSLPLAIKWLRDSVQQNQSLRFQVLVTGSL--HLI 527 (536)
Q Consensus 450 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~Ai~~~~~~~~~~~~~~~~VLvtGSl--~LV 527 (536)
.++++.+.+ +.++..++++++|++++.+.+++++ .|||+||- +-+
T Consensus 107 ~~~~~~~~~-----------------------------~~~~~~~~d~~eai~~~~~~~~~gD----vVLv~Gsg~~~~~ 153 (163)
T 3mvn_A 107 QVSEVLANL-----------------------------AQPAISADDVDELVMRIVQQAKPND----HILIMSNGAFGGI 153 (163)
T ss_dssp CHHHHHTTC-----------------------------CSCEEEESSHHHHHHHHHHHCCTTC----EEEEECSSCGGGH
T ss_pred CHHHHHhhC-----------------------------CCCeEEECCHHHHHHHHHHhCCCCC----EEEEECCCCHHHH
Confidence 012222111 1146788999999999988776543 89998764 444
Q ss_pred HH
Q 048728 528 GD 529 (536)
Q Consensus 528 G~ 529 (536)
+.
T Consensus 154 ~~ 155 (163)
T 3mvn_A 154 HQ 155 (163)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 19
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.18 E-value=0.13 Score=51.97 Aligned_cols=36 Identities=25% Similarity=0.206 Sum_probs=31.0
Q ss_pred CCCcEEEEcC--CCchhHHHHHHHHHHHhCCCCEEEEe
Q 048728 54 SQLKVIHVAG--TKGKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 54 ~~l~vI~VTG--TnGKTST~~ml~~IL~~~G~k~g~~t 89 (536)
...+||+|+| =-|||||+.-|+..|.+.|+||+++-
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4568999995 56899999999999999999998763
No 20
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=91.97 E-value=0.22 Score=49.00 Aligned_cols=51 Identities=14% Similarity=0.169 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCcccCCCCcEEEEcCC---CchhHHHHHHHHHHHhCCCCEEEE
Q 048728 38 ELLSDYLKILDLDVAISQLKVIHVAGT---KGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 38 ~~~~~~L~~Lg~~~p~~~l~vI~VTGT---nGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
|.++.+...|.+..+....++|.||++ -||||++.-|+..|.+.|+||.++
T Consensus 64 Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLI 117 (271)
T 3bfv_A 64 EKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIV 117 (271)
T ss_dssp HHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 334444443333234456789999976 589999999999999999999774
No 21
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=90.80 E-value=0.22 Score=47.72 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=32.5
Q ss_pred CCCcEEEEcCC---CchhHHHHHHHHHHHhCCCCEEEEe
Q 048728 54 SQLKVIHVAGT---KGKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 54 ~~l~vI~VTGT---nGKTST~~ml~~IL~~~G~k~g~~t 89 (536)
.+++.|-|||| .|||+++.-|...|++.|++++.|-
T Consensus 2 ~~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K 40 (228)
T 3of5_A 2 NAMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK 40 (228)
T ss_dssp TTCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec
Confidence 46788999998 5999999999999999999999885
No 22
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=90.73 E-value=0.27 Score=49.07 Aligned_cols=37 Identities=8% Similarity=0.217 Sum_probs=31.5
Q ss_pred CCCCcEEEEcCC---CchhHHHHHHHHHHHhCCCCEEEEe
Q 048728 53 ISQLKVIHVAGT---KGKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 53 ~~~l~vI~VTGT---nGKTST~~ml~~IL~~~G~k~g~~t 89 (536)
....++|.|||+ -||||++.-|+..|.+.|.||.++-
T Consensus 101 ~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 140 (299)
T 3cio_A 101 ETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFID 140 (299)
T ss_dssp SCSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEE
Confidence 345689999977 5899999999999999999997753
No 23
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=90.17 E-value=0.31 Score=48.36 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=31.4
Q ss_pred cCCCCcEEEEcCC---CchhHHHHHHHHHHHhCCCCEEEE
Q 048728 52 AISQLKVIHVAGT---KGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 52 p~~~l~vI~VTGT---nGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
+..+.++|.||++ -||||++.-|+..|.+.|+||.++
T Consensus 88 ~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 127 (286)
T 3la6_A 88 MQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLI 127 (286)
T ss_dssp TTTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence 3455689999876 489999999999999999999775
No 24
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=89.89 E-value=0.35 Score=44.29 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=31.6
Q ss_pred CCcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 55 QLKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 55 ~l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
++++|.|+|.. ||||++..|...|+..|++++.+..-
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~ 41 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 41 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence 56799999975 89999999999999999999987743
No 25
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=89.79 E-value=0.32 Score=44.63 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=29.0
Q ss_pred CcEEEEcC---CCchhHHHHHHHHHHHhCCCCEEEEe
Q 048728 56 LKVIHVAG---TKGKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 56 l~vI~VTG---TnGKTST~~ml~~IL~~~G~k~g~~t 89 (536)
+++|.|++ -.||||++..|+..|...|++|.++-
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 46899984 46799999999999999999998753
No 26
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=89.64 E-value=0.28 Score=45.95 Aligned_cols=32 Identities=28% Similarity=0.361 Sum_probs=28.5
Q ss_pred cEEEEcCC---CchhHHHHHHHHHHHhCCCCEEEE
Q 048728 57 KVIHVAGT---KGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 57 ~vI~VTGT---nGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
++|.|+++ .|||||+.-|+..|.+.|+||.++
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 57888876 589999999999999999999885
No 27
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=88.84 E-value=0.36 Score=47.03 Aligned_cols=36 Identities=28% Similarity=0.495 Sum_probs=32.7
Q ss_pred CCCcEEEEcCCC---chhHHHHHHHHHHHhCCCCEEEEe
Q 048728 54 SQLKVIHVAGTK---GKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 54 ~~l~vI~VTGTn---GKTST~~ml~~IL~~~G~k~g~~t 89 (536)
.+++.|-||||. |||+++.-|...|++.|++++.|-
T Consensus 24 ~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fK 62 (251)
T 3fgn_A 24 SHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCK 62 (251)
T ss_dssp SSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 457899999987 999999999999999999999885
No 28
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=88.27 E-value=0.44 Score=44.88 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=28.4
Q ss_pred cEEEEcCCC---chhHHHHHHHHHHHhCCCCEEEEe
Q 048728 57 KVIHVAGTK---GKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 57 ~vI~VTGTn---GKTST~~ml~~IL~~~G~k~g~~t 89 (536)
++|.|++++ ||||++..|+..|.+.|+||.++-
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVD 38 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 578888654 899999999999999999998753
No 29
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=87.76 E-value=0.49 Score=45.57 Aligned_cols=34 Identities=29% Similarity=0.330 Sum_probs=29.8
Q ss_pred CCcEEEEcCCC---chhHHHHHHHHHHHhCCCCEEEE
Q 048728 55 QLKVIHVAGTK---GKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 55 ~l~vI~VTGTn---GKTST~~ml~~IL~~~G~k~g~~ 88 (536)
+.++|.|++++ ||||++..|+..|...|+||.++
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli 41 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLV 41 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEE
Confidence 45799999665 79999999999999999999775
No 30
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=86.45 E-value=1.2 Score=45.79 Aligned_cols=53 Identities=13% Similarity=0.092 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHcCCc---ccCCCCcEEEEcC---CCchhHHHHHHHHHHHh------CCCCEEEE
Q 048728 36 RFELLSDYLKILDLD---VAISQLKVIHVAG---TKGKGSTCTFTESILRN------CGFRTGLF 88 (536)
Q Consensus 36 ~l~~~~~~L~~Lg~~---~p~~~l~vI~VTG---TnGKTST~~ml~~IL~~------~G~k~g~~ 88 (536)
.++++..+...+++. .+....++|.|++ --|||||+..|+..|.. .|+||.++
T Consensus 85 ~~~~i~~~~~~~~~~~~~~~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlli 149 (398)
T 3ez2_A 85 SIQNIIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVI 149 (398)
T ss_dssp CHHHHHHHHHHTTCCCGGGTCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEE
T ss_pred CHHHHHHHHHHhcccccCcCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 688998888887642 3445678999994 55899999999999984 68998764
No 31
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=85.52 E-value=0.77 Score=44.46 Aligned_cols=35 Identities=23% Similarity=0.417 Sum_probs=31.6
Q ss_pred CCcEEEEcCC---CchhHHHHHHHHHHHhCCCCEEEEe
Q 048728 55 QLKVIHVAGT---KGKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 55 ~l~vI~VTGT---nGKTST~~ml~~IL~~~G~k~g~~t 89 (536)
..+.|-|||| .|||+++.-|...|++.|++++.|-
T Consensus 20 m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK 57 (242)
T 3qxc_A 20 QGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK 57 (242)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence 3478999998 6999999999999999999999885
No 32
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=85.40 E-value=0.67 Score=44.44 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=27.3
Q ss_pred cEEEEcCC---CchhHHHHHHHHHHHhCCCCEEEE
Q 048728 57 KVIHVAGT---KGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 57 ~vI~VTGT---nGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
++|.|+++ .||||++..|+..|...|++|.++
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIV 37 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 57777654 579999999999999999999875
No 33
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=85.11 E-value=0.72 Score=43.55 Aligned_cols=35 Identities=9% Similarity=-0.010 Sum_probs=29.5
Q ss_pred CCcEEEEcC---CCchhHHHHHHHHHHHhC-CCCEEEEe
Q 048728 55 QLKVIHVAG---TKGKGSTCTFTESILRNC-GFRTGLFT 89 (536)
Q Consensus 55 ~l~vI~VTG---TnGKTST~~ml~~IL~~~-G~k~g~~t 89 (536)
..++|.|++ -.||||++..|+..|... |+||.++-
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 457899984 567999999999999998 99997753
No 34
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=85.09 E-value=0.84 Score=44.07 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=28.5
Q ss_pred CcEEEEcCCC---chhHHHHHHHHHHHhCCCCEEEE
Q 048728 56 LKVIHVAGTK---GKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 56 l~vI~VTGTn---GKTST~~ml~~IL~~~G~k~g~~ 88 (536)
.++|.|++++ ||||++.-|+..|.+.|+||.++
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~Vlli 53 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGIL 53 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4689998665 69999999999999999998764
No 35
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=85.06 E-value=0.81 Score=43.60 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=27.7
Q ss_pred cEEEEcCC---CchhHHHHHHHHHHHhCCCCEEEE
Q 048728 57 KVIHVAGT---KGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 57 ~vI~VTGT---nGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
++|.|+++ .||||++..|+..|...|++|.++
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVI 37 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 57888754 579999999999999999999775
No 36
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=84.63 E-value=0.77 Score=44.25 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=28.8
Q ss_pred CCCcEEEEcCCC---chhHHHHHHHHHHHhCCCCEEEE
Q 048728 54 SQLKVIHVAGTK---GKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 54 ~~l~vI~VTGTn---GKTST~~ml~~IL~~~G~k~g~~ 88 (536)
.+.++|.|++.+ ||||++..|+..|. .|+||.++
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~Vlli 61 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLI 61 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEE
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEE
Confidence 456899998665 69999999999999 99999775
No 37
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=83.41 E-value=1 Score=43.24 Aligned_cols=32 Identities=22% Similarity=0.200 Sum_probs=26.6
Q ss_pred cEEEEc--CCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 57 KVIHVA--GTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 57 ~vI~VT--GTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
++|.|. |-.||||++..|+..|...|+||.++
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 455554 56789999999999999999999764
No 38
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=83.17 E-value=2 Score=42.05 Aligned_cols=45 Identities=18% Similarity=0.207 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHcCCcccCCCCcEEEEc-----CCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 36 RFELLSDYLKILDLDVAISQLKVIHVA-----GTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 36 ~l~~~~~~L~~Lg~~~p~~~l~vI~VT-----GTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
.+..+++.+..-+ ++|.|+ |-.||||++..|+..|...|+||.++
T Consensus 22 ~~~~~~r~~~~~~--------~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlli 71 (298)
T 2oze_A 22 ILEELRRILSNKN--------EAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMI 71 (298)
T ss_dssp HHHHHHHHHHHHC--------SCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHhcCCC--------cEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEE
Confidence 3556666665322 344444 56899999999999999999999764
No 39
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=83.11 E-value=1.1 Score=44.09 Aligned_cols=35 Identities=26% Similarity=0.222 Sum_probs=29.4
Q ss_pred CCCcEEEEc--CCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 54 SQLKVIHVA--GTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 54 ~~l~vI~VT--GTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
...++|.|+ |--||||++.-|+..|.+.|+||.++
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 456788887 45679999999999999999999875
No 40
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=83.04 E-value=1.5 Score=44.78 Aligned_cols=36 Identities=11% Similarity=0.071 Sum_probs=30.6
Q ss_pred CCCCcEEEEcCCC---chhHHHHHHHHHHHhCCCCEEEE
Q 048728 53 ISQLKVIHVAGTK---GKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 53 ~~~l~vI~VTGTn---GKTST~~ml~~IL~~~G~k~g~~ 88 (536)
..+.++|+|++.+ ||||++.-|+..|...|+||.++
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlli 178 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYL 178 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEE
Confidence 3567899998654 79999999999999999999764
No 41
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=82.91 E-value=1.2 Score=46.10 Aligned_cols=53 Identities=17% Similarity=0.104 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHcCCc---ccCCCCcEEEEc---CCCchhHHHHHHHHHHH------hCCCCEEEE
Q 048728 36 RFELLSDYLKILDLD---VAISQLKVIHVA---GTKGKGSTCTFTESILR------NCGFRTGLF 88 (536)
Q Consensus 36 ~l~~~~~~L~~Lg~~---~p~~~l~vI~VT---GTnGKTST~~ml~~IL~------~~G~k~g~~ 88 (536)
.++++.++.+..+.. .+....++|.|+ |--|||||+..|+..|. ..|+||.++
T Consensus 88 ~~~~v~~~~~~~~~~~~r~~~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlli 152 (403)
T 3ez9_A 88 TIQNVIDIYAHRKIPKYRDIHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVI 152 (403)
T ss_dssp CHHHHHHHHHHTTCCCHHHHSCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEE
T ss_pred CHHHHHHHHHHhccCCcCCCCCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 678888888776642 244567899999 55689999999999998 579999775
No 42
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=82.82 E-value=1 Score=42.08 Aligned_cols=30 Identities=37% Similarity=0.411 Sum_probs=25.6
Q ss_pred EEEEc---CCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 58 VIHVA---GTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 58 vI~VT---GTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
+|.|+ |-.||||++..|+..|...| +|.++
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~Vlli 34 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLI 34 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEE
Confidence 56666 56699999999999999999 98765
No 43
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=82.81 E-value=1.2 Score=43.49 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=27.6
Q ss_pred CcEEEEc--CCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 56 LKVIHVA--GTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 56 l~vI~VT--GTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
+++|.|+ |-.||||++.-|+..|.+.|+||.++
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 3566665 56789999999999999999999764
No 44
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=82.74 E-value=6.4 Score=41.44 Aligned_cols=36 Identities=19% Similarity=0.416 Sum_probs=30.4
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
..+|.++|.+ |||||+.-|+..|...|+++.++...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D 137 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSD 137 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4588888754 79999999999999999999887643
No 45
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=82.31 E-value=1.2 Score=43.57 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=27.8
Q ss_pred cEEEEcC---CCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 57 KVIHVAG---TKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 57 ~vI~VTG---TnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
++|.|++ -.||||++..|+..|.+.|++|.++
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vlli 39 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVI 39 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 5899985 4589999999999999999999764
No 46
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=80.72 E-value=5.6 Score=39.33 Aligned_cols=36 Identities=22% Similarity=0.173 Sum_probs=28.3
Q ss_pred CCcEEEEcCCC--chhHHHHHHHHHHHh-CCCCEEEEeC
Q 048728 55 QLKVIHVAGTK--GKGSTCTFTESILRN-CGFRTGLFTS 90 (536)
Q Consensus 55 ~l~vI~VTGTn--GKTST~~ml~~IL~~-~G~k~g~~tS 90 (536)
+-.+|+|.|-| |||||+..|+..+.. .|+++.++..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 34577777654 899999999999985 8998887654
No 47
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=80.44 E-value=2.9 Score=41.96 Aligned_cols=36 Identities=14% Similarity=0.339 Sum_probs=30.0
Q ss_pred CCcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 55 QLKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 55 ~l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
+..+|.|+|.+ |||||+..|+..|...|.++.+...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 45689999875 7999999999999999988876543
No 48
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=80.33 E-value=1.5 Score=39.97 Aligned_cols=32 Identities=31% Similarity=0.478 Sum_probs=27.4
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEE
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILRNCGFRTGL 87 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~ 87 (536)
+++|+|.|.+ ||||++.+|..++...|+++|.
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~ 35 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILRERGLRVAV 35 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhhhcCCceEE
Confidence 3689999975 7999999999999999988874
No 49
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=79.56 E-value=3.3 Score=41.35 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=29.4
Q ss_pred CCcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEe
Q 048728 55 QLKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 55 ~l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~t 89 (536)
.-.+|.|+|-+ |||||+..|+..|...|.++.+..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 34689999876 799999999999999898887654
No 50
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=79.03 E-value=1.8 Score=44.25 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=32.2
Q ss_pred CcEEEEcCCC---chhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 56 LKVIHVAGTK---GKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 56 l~vI~VTGTn---GKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
.+.|.|+||. |||+|+..|...|++.|++++.+.|.
T Consensus 152 ~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tg 190 (349)
T 2obn_A 152 CRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATG 190 (349)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCS
T ss_pred ceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEecc
Confidence 4679999984 99999999999999999999987754
No 51
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=76.93 E-value=2.4 Score=43.28 Aligned_cols=37 Identities=27% Similarity=0.388 Sum_probs=32.9
Q ss_pred CCcEEEEcCCC---chhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 55 QLKVIHVAGTK---GKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 55 ~l~vI~VTGTn---GKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
+.+.|-|+||. |||+|+..+...|++.|++++.+.+.
T Consensus 168 ~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tg 207 (350)
T 2g0t_A 168 KIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATG 207 (350)
T ss_dssp CSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred cceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccC
Confidence 35679999985 99999999999999999999998866
No 52
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=76.71 E-value=4.2 Score=37.36 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=29.5
Q ss_pred CCCcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 54 SQLKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 54 ~~l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
.+-.+|+|+|-+ ||||++.+|...|...|.++.+...
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~ 58 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence 344689999976 8999999999999887877665543
No 53
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=76.69 E-value=1.4 Score=44.85 Aligned_cols=33 Identities=18% Similarity=0.138 Sum_probs=28.2
Q ss_pred CcEEEEcCC---CchhHHHHHHHHHHHhCCCCEEEE
Q 048728 56 LKVIHVAGT---KGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 56 l~vI~VTGT---nGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
+++|.|++. .||||++.-|+..|...|+||.++
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlI 36 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYV 36 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 367888854 589999999999999999999775
No 54
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=76.64 E-value=3 Score=41.67 Aligned_cols=39 Identities=15% Similarity=0.115 Sum_probs=31.0
Q ss_pred cCCCCcEEEEc---CCCchhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 52 AISQLKVIHVA---GTKGKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 52 p~~~l~vI~VT---GTnGKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
|...+++|.|+ |--||||++.-++..|.+.|+||.++..
T Consensus 9 ~~~gm~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~ 50 (324)
T 3zq6_A 9 FNKGKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIST 50 (324)
T ss_dssp CBTTBCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCCeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 33444667776 6678999999999999999999987654
No 55
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=73.34 E-value=3.1 Score=43.71 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=30.8
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
-.+|.++|-+ |||||+..|+..|...|+++.++...
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 4689998865 59999999999999999999887654
No 56
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=73.28 E-value=4 Score=37.14 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=30.3
Q ss_pred CCcEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 55 QLKVIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 55 ~l~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
.+++|.|+|- .||||++..|...|...|++++.+..
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~ 42 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEee
Confidence 3678999997 48999999999889889999987654
No 57
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=73.10 E-value=7.9 Score=35.60 Aligned_cols=34 Identities=15% Similarity=0.282 Sum_probs=27.3
Q ss_pred CCcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEE
Q 048728 55 QLKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 55 ~l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~ 88 (536)
+-.+|+|.|-| ||||++.+|..+|...|..+|.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v 56 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVV 56 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEE
Confidence 44699999976 89999999999998766555543
No 58
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=69.27 E-value=3.2 Score=41.91 Aligned_cols=35 Identities=31% Similarity=0.348 Sum_probs=28.0
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
-.+|++.|-| |||||+..|+..++..|.++.+.+.
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~ 165 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAAS 165 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEee
Confidence 4578888765 7999999999999998877765543
No 59
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=68.14 E-value=4 Score=41.35 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=30.3
Q ss_pred CCCcEEEEc---CCCchhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 54 SQLKVIHVA---GTKGKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 54 ~~l~vI~VT---GTnGKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
...++|.|+ |--||||+++-++..|...|+||.++..
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~ 62 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVST 62 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEEC
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 345677776 6678999999999999999999987654
No 60
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=66.65 E-value=5.2 Score=40.11 Aligned_cols=33 Identities=15% Similarity=0.061 Sum_probs=27.4
Q ss_pred EEEEc---CCCchhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 58 VIHVA---GTKGKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 58 vI~VT---GTnGKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
+|.|+ |-.||||+++.++..|.+.|+||.++..
T Consensus 20 ~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~ 55 (329)
T 2woo_A 20 KWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIST 55 (329)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 44454 6778999999999999999999988653
No 61
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=64.72 E-value=7.7 Score=34.74 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=26.8
Q ss_pred EEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 58 VIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 58 vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
+|.|+|. .||||.+.+|...|...|+++.....|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~ 37 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREP 37 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeCC
Confidence 5888884 689999999999999999987544333
No 62
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=63.34 E-value=5.9 Score=38.99 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=26.9
Q ss_pred CCcEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 55 QLKVIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 55 ~l~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
+..+|+|||. .||||++.+|...|...|+++.++..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~ 41 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEG 41 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeec
Confidence 3468999996 58999999999999877776655443
No 63
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=63.01 E-value=8.8 Score=35.23 Aligned_cols=29 Identities=17% Similarity=0.362 Sum_probs=22.6
Q ss_pred EEEEcCCC--chhHHHHHHHHHHHhCCCCEE
Q 048728 58 VIHVAGTK--GKGSTCTFTESILRNCGFRTG 86 (536)
Q Consensus 58 vI~VTGTn--GKTST~~ml~~IL~~~G~k~g 86 (536)
+|+|.|-| ||||+..+|...++..|...+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~Gi~~~ 33 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVD 33 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCE
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCCEEEc
Confidence 56777766 599999999999987775443
No 64
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=61.99 E-value=10 Score=33.88 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=27.4
Q ss_pred CcEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEE
Q 048728 56 LKVIHVAGT--KGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 56 l~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
-.+|.|+|- .||||.+..|+..|...|+++.++
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 357888886 689999999999999888876544
No 65
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=61.53 E-value=3.5 Score=38.55 Aligned_cols=27 Identities=15% Similarity=-0.022 Sum_probs=23.5
Q ss_pred cCCCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 62 AGTKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 62 TGTnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
-|-.||||++.-|+..|.+.|+||.++
T Consensus 8 kGGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 8 KGGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp SSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 356679999999999999999998764
No 66
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=61.35 E-value=7.6 Score=34.51 Aligned_cols=32 Identities=28% Similarity=0.387 Sum_probs=26.3
Q ss_pred cEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEE
Q 048728 57 KVIHVAGT--KGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
++|.|+|. .||||.+..|+.-|...|+++..+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 35 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKII 35 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE
Confidence 46777775 799999999999999888877554
No 67
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=60.58 E-value=9 Score=37.59 Aligned_cols=34 Identities=32% Similarity=0.567 Sum_probs=30.8
Q ss_pred CCCcEEEEcC----CCchhHHHHHHHHHHHhCCCCEEE
Q 048728 54 SQLKVIHVAG----TKGKGSTCTFTESILRNCGFRTGL 87 (536)
Q Consensus 54 ~~l~vI~VTG----TnGKTST~~ml~~IL~~~G~k~g~ 87 (536)
..++.|-||| +=|||-|++-|..+|++.|+++..
T Consensus 21 ~~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~ 58 (295)
T 2vo1_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTS 58 (295)
T ss_dssp CCCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred ccceEEEEcCCcccccccHHHHHHHHHHHHHCCCccee
Confidence 4678999999 789999999999999999999865
No 68
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=60.40 E-value=15 Score=37.07 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=35.1
Q ss_pred HHHHHHHcCCcccCCCCcEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEe
Q 048728 40 LSDYLKILDLDVAISQLKVIHVAGT--KGKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 40 ~~~~L~~Lg~~~p~~~l~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~t 89 (536)
...+++.+. ....+..+|+|+|. .||||++.-|...|...|++++++.
T Consensus 65 ~~~~~~~~~--~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 65 AQQLLLRLL--PDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp HHHHHHHHG--GGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HHHHHHHhH--hhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 344455442 12345678999984 5799999999999999999998764
No 69
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=59.05 E-value=9.8 Score=37.69 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=26.7
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEe
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~t 89 (536)
-.+|++.|-| |||||...|+..++..+.++.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3478888876 899999999999998776665443
No 70
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=58.59 E-value=13 Score=37.29 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=35.1
Q ss_pred HHHHHHcCCcccCCCCcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEe
Q 048728 41 SDYLKILDLDVAISQLKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 41 ~~~L~~Lg~~~p~~~l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~t 89 (536)
+.++..+.+ ...+..+|+|+|-+ ||||+...|...+...|.++.++.
T Consensus 43 ~~~~~~l~~--~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~ 91 (341)
T 2p67_A 43 TQLLDAIMP--YCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 91 (341)
T ss_dssp HHHHHHHGG--GCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhCCc--ccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 345555432 23456789999876 799999999999998898887654
No 71
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=58.14 E-value=6.4 Score=41.21 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=28.7
Q ss_pred CcEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 56 LKVIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 56 l~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
-.+|.|+|- .|||||+..|+..|...|.++.++..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 457777764 48999999999999999998877654
No 72
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=57.86 E-value=4.3 Score=42.56 Aligned_cols=34 Identities=24% Similarity=0.429 Sum_probs=28.2
Q ss_pred cEEEEcC--CCchhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 57 KVIHVAG--TKGKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 57 ~vI~VTG--TnGKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
.+|.|+| -.|||||+.-|+..|...|+++.++..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 4777776 358999999999999999999987654
No 73
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=57.38 E-value=47 Score=33.16 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=25.9
Q ss_pred CCCcEEEEcCCC--chhHHHHHHHHHHHhC--CCCEEEEe
Q 048728 54 SQLKVIHVAGTK--GKGSTCTFTESILRNC--GFRTGLFT 89 (536)
Q Consensus 54 ~~l~vI~VTGTn--GKTST~~ml~~IL~~~--G~k~g~~t 89 (536)
....+|+|+|.+ ||||++.+|..+|... +.++++++
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~ 129 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVIT 129 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEe
Confidence 334589999965 7999999999999742 33455433
No 74
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=57.31 E-value=11 Score=39.50 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=29.5
Q ss_pred CCcEEEEcC--CCchhHHHHHHHHHHHhC-CCCEEEEeC
Q 048728 55 QLKVIHVAG--TKGKGSTCTFTESILRNC-GFRTGLFTS 90 (536)
Q Consensus 55 ~l~vI~VTG--TnGKTST~~ml~~IL~~~-G~k~g~~tS 90 (536)
+.++|.|+| -.|||||+.-|+..|... |++|.++..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~ 137 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSA 137 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 345787775 468999999999999998 999987654
No 75
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=57.22 E-value=11 Score=33.36 Aligned_cols=30 Identities=20% Similarity=0.197 Sum_probs=25.1
Q ss_pred cEEEEcCCC--chhHHHHHHHHHHHhCCCCEE
Q 048728 57 KVIHVAGTK--GKGSTCTFTESILRNCGFRTG 86 (536)
Q Consensus 57 ~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g 86 (536)
.+|.++|.. ||||++.+|+..|...|+++.
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i 37 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCY 37 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEE
Confidence 478899864 899999999999988887654
No 76
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=56.31 E-value=9 Score=37.35 Aligned_cols=34 Identities=32% Similarity=0.567 Sum_probs=29.9
Q ss_pred CCCcEEEEcC----CCchhHHHHHHHHHHHhCCCCEEE
Q 048728 54 SQLKVIHVAG----TKGKGSTCTFTESILRNCGFRTGL 87 (536)
Q Consensus 54 ~~l~vI~VTG----TnGKTST~~ml~~IL~~~G~k~g~ 87 (536)
..++.|-||| +=|||-|++-+..+|++.|+++..
T Consensus 21 ~~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt~ 58 (294)
T 2c5m_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTS 58 (294)
T ss_dssp CCCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEEC
T ss_pred eceEEEEEcCccccccchHHHHHHHHHHHHHCCCeeEE
Confidence 4578999998 569999999999999999999853
No 77
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=55.86 E-value=8.8 Score=38.66 Aligned_cols=29 Identities=21% Similarity=0.143 Sum_probs=25.4
Q ss_pred cCCCchhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 62 AGTKGKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 62 TGTnGKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
-|-.||||++.-++..|...|+||.++..
T Consensus 24 kGGvGKTt~a~~lA~~la~~g~~vllid~ 52 (334)
T 3iqw_A 24 KGGVGKTTTSCSLAIQLAKVRRSVLLLST 52 (334)
T ss_dssp STTSSHHHHHHHHHHHHTTSSSCEEEEEC
T ss_pred CCCccHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 37789999999999999999999987654
No 78
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=55.80 E-value=9.8 Score=38.57 Aligned_cols=34 Identities=26% Similarity=0.210 Sum_probs=27.7
Q ss_pred cEEEEc--CCCchhHHHHHHHHHHH--hCCCCEEEEeC
Q 048728 57 KVIHVA--GTKGKGSTCTFTESILR--NCGFRTGLFTS 90 (536)
Q Consensus 57 ~vI~VT--GTnGKTST~~ml~~IL~--~~G~k~g~~tS 90 (536)
+++-++ |-.||||+++.++..|. ..|++|.++..
T Consensus 19 ~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~ 56 (348)
T 3io3_A 19 KWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIST 56 (348)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 444444 67789999999999999 89999987654
No 79
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=55.71 E-value=14 Score=33.39 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=28.3
Q ss_pred cEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 57 KVIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
.+|.|+|. .||||.+.+|+.-|...|+.+-.+.-|
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~ 46 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFP 46 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCC
Confidence 57888885 799999999999999889887544333
No 80
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=55.46 E-value=16 Score=38.93 Aligned_cols=35 Identities=26% Similarity=0.218 Sum_probs=30.8
Q ss_pred CCCcEEEEcCC------CchhHHHHHHHHHHHhCCCCEEEE
Q 048728 54 SQLKVIHVAGT------KGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 54 ~~l~vI~VTGT------nGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
.+.++|.||.+ -|||||+.=|+..|.+.|.|+.+.
T Consensus 55 ~~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~~GkkVLLi 95 (557)
T 3pzx_A 55 PDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVC 95 (557)
T ss_dssp CCCEEEEEEESCCCTTCCCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHcCCeEEEE
Confidence 45689999987 479999999999999999999765
No 81
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=54.49 E-value=12 Score=36.84 Aligned_cols=36 Identities=28% Similarity=0.408 Sum_probs=29.3
Q ss_pred CcEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 56 LKVIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 56 l~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
..+|.++|- .||||++..|+..+...|.++.+....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 457888874 479999999999999999998776543
No 82
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=54.32 E-value=6.3 Score=36.40 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=27.4
Q ss_pred EEEcC--CCchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 59 IHVAG--TKGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 59 I~VTG--TnGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
|.+-| -.||||-+.+|..-|++.|+++.+..-|
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP 37 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREP 37 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 44445 3699999999999999999999877767
No 83
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=54.26 E-value=13 Score=37.94 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=26.7
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEe
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~t 89 (536)
-.+|++.|-| |||||+..|+..++..+.++.+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 3478888876 899999999999998776655443
No 84
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=53.58 E-value=17 Score=32.89 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=27.3
Q ss_pred CcEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEE
Q 048728 56 LKVIHVAGT--KGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 56 l~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
-.+|.|+|. .||||.+.+|+.-|...++.+-.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~ 44 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHL 44 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 357889885 799999999999999888877443
No 85
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=53.34 E-value=14 Score=37.41 Aligned_cols=34 Identities=12% Similarity=0.031 Sum_probs=28.1
Q ss_pred cEEEEc---CCCchhHHHHHHHHHHH--hCCCCEEEEeC
Q 048728 57 KVIHVA---GTKGKGSTCTFTESILR--NCGFRTGLFTS 90 (536)
Q Consensus 57 ~vI~VT---GTnGKTST~~ml~~IL~--~~G~k~g~~tS 90 (536)
++|.|+ |--||||+++-++..|. +.|+||.++..
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~ 56 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIST 56 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 345555 67899999999999999 99999987654
No 86
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=52.82 E-value=17 Score=35.96 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=26.8
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEe
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~t 89 (536)
-.+|+|.|-| ||||+...|+.+++..|.++.+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4578888765 699999999999998776665544
No 87
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=52.47 E-value=25 Score=37.59 Aligned_cols=33 Identities=24% Similarity=0.151 Sum_probs=26.2
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEE
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~ 88 (536)
-.+|+|.|-| ||||+...|..+++..|.++.+.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 3588888877 79999999999999877665443
No 88
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=50.90 E-value=23 Score=37.85 Aligned_cols=36 Identities=28% Similarity=0.454 Sum_probs=29.2
Q ss_pred CCcEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 55 QLKVIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 55 ~l~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
+.++|.|+|. .|||||+.-|...|...|+++.++..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4568888875 57999999999999999999987653
No 89
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=48.91 E-value=33 Score=34.19 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=36.4
Q ss_pred HHHHHHHHHHcCCc-ccCCCCcEEEE----cCCCchhHHHHHHHHHHHhCCCCEEEEe
Q 048728 37 FELLSDYLKILDLD-VAISQLKVIHV----AGTKGKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 37 l~~~~~~L~~Lg~~-~p~~~l~vI~V----TGTnGKTST~~ml~~IL~~~G~k~g~~t 89 (536)
+-.+|+++-+.|+- .-...+|||.| .|-.|||-++.+|...|+.. +++.++
T Consensus 16 i~~~R~~ly~~~~~k~~~~~vPVI~VGNitvGGTGKTP~vi~L~~~L~~~--~~~ils 71 (315)
T 4ehx_A 16 IINFRNTLYDKGFLKIKKLPVPVISVGNLSVGGSGKTSFVMYLADLLKDK--RVCILS 71 (315)
T ss_dssp HHHHHHHHHHTTCSCCBCCSSCEEEEEESBSSCCSHHHHHHHHHHHTTTS--CEEEEE
T ss_pred HHHHHHHHHhccccccccCCCCEEEECCEEeCCCChHHHHHHHHHHHhhc--CceEEe
Confidence 34566666666643 22346789998 69999999999999999754 555543
No 90
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=48.47 E-value=10 Score=35.78 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=20.7
Q ss_pred CCcEEEEcCCC--chhHHHHHHHHHH
Q 048728 55 QLKVIHVAGTK--GKGSTCTFTESIL 78 (536)
Q Consensus 55 ~l~vI~VTGTn--GKTST~~ml~~IL 78 (536)
+-.+|+|+|-| ||||++.+|..+|
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999987 7999999999988
No 91
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=47.29 E-value=19 Score=35.41 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=29.0
Q ss_pred CCcEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 55 QLKVIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 55 ~l~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
+-.+|+|+|- .||||++..|+..+...|.++.+...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 3458888874 57999999999999998988866543
No 92
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=46.92 E-value=24 Score=31.12 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=24.6
Q ss_pred EEEEcCC--CchhHHHHHHHHHHHhCCCCEEE
Q 048728 58 VIHVAGT--KGKGSTCTFTESILRNCGFRTGL 87 (536)
Q Consensus 58 vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~ 87 (536)
+|+|+|. .||||.+.+|+.-|...|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~ 33 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSL 33 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 5777775 58999999999999888887643
No 93
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=46.32 E-value=11 Score=39.71 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=20.1
Q ss_pred EEEEcCCCchhHH-HHHHHHHHHh
Q 048728 58 VIHVAGTKGKGST-CTFTESILRN 80 (536)
Q Consensus 58 vI~VTGTnGKTST-~~ml~~IL~~ 80 (536)
+|+|| |||||+| +.+|...|++
T Consensus 123 ~iaIs-T~Gksp~la~~ir~~ie~ 145 (457)
T 1pjq_A 123 MVAVS-SGGTSPVLARLLREKLES 145 (457)
T ss_dssp EEEEE-CTTSCHHHHHHHHHHHHH
T ss_pred EEEEE-CCCCChHHHHHHHHHHHH
Confidence 89999 9999998 8889888876
No 94
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=45.99 E-value=31 Score=34.49 Aligned_cols=47 Identities=17% Similarity=0.296 Sum_probs=34.7
Q ss_pred HHHHHHcCCcccCCCCcEEEEcCCCc--hhHHHHHHHHHHHhCCCCEEEEe
Q 048728 41 SDYLKILDLDVAISQLKVIHVAGTKG--KGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 41 ~~~L~~Lg~~~p~~~l~vI~VTGTnG--KTST~~ml~~IL~~~G~k~g~~t 89 (536)
..+|+.+.+ ...+-.+|+|+|-+| |||+..+|...+...+.++.+.+
T Consensus 42 ~~~l~~i~~--~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~ 90 (337)
T 2qm8_A 42 RDLIDAVLP--QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA 90 (337)
T ss_dssp HHHHHHHGG--GCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhCCc--ccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEE
Confidence 346666652 234567999999875 99999999999988777776654
No 95
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=45.91 E-value=9.3 Score=34.66 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=17.0
Q ss_pred cEEEEcCCC--chhHHHHHHHH
Q 048728 57 KVIHVAGTK--GKGSTCTFTES 76 (536)
Q Consensus 57 ~vI~VTGTn--GKTST~~ml~~ 76 (536)
.+|+|+|.+ ||||.+.+|+.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 478999865 89999999988
No 96
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=45.77 E-value=14 Score=34.65 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=27.1
Q ss_pred cEEEEcCCC--chhHHHHHHHHHHHhCCC-CEEEEeCC
Q 048728 57 KVIHVAGTK--GKGSTCTFTESILRNCGF-RTGLFTSP 91 (536)
Q Consensus 57 ~vI~VTGTn--GKTST~~ml~~IL~~~G~-k~g~~tSp 91 (536)
.+|.+.|.. ||||.+..|..-|+..|+ .+.+...|
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep 41 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREP 41 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCC
Confidence 467777754 699999999999999998 55444445
No 97
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=44.52 E-value=28 Score=30.75 Aligned_cols=47 Identities=15% Similarity=0.175 Sum_probs=30.8
Q ss_pred HHHHHHHHHHcCCcccCCCCcEEEEcCCC--chhHHHHHHHHHHH-hCCCCEEE
Q 048728 37 FELLSDYLKILDLDVAISQLKVIHVAGTK--GKGSTCTFTESILR-NCGFRTGL 87 (536)
Q Consensus 37 l~~~~~~L~~Lg~~~p~~~l~vI~VTGTn--GKTST~~ml~~IL~-~~G~k~g~ 87 (536)
+..++++++.+.. .+-..+.+.|-+ ||||++..+...+. ..|+++..
T Consensus 23 ~~~~~~~~~~~~~----~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~ 72 (180)
T 3ec2_A 23 LLTIRVFVHNFNP----EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF 72 (180)
T ss_dssp HHHHHHHHHSCCG----GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE
T ss_pred HHHHHHHHHhccc----cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE
Confidence 3444555554431 123578888865 69999999999887 67765543
No 98
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=44.17 E-value=12 Score=33.58 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=19.8
Q ss_pred ccCCCCcEEEEcCC--CchhHHHHHHHHH
Q 048728 51 VAISQLKVIHVAGT--KGKGSTCTFTESI 77 (536)
Q Consensus 51 ~p~~~l~vI~VTGT--nGKTST~~ml~~I 77 (536)
++..+..+|+|+|. .||||++.+|+..
T Consensus 3 ~~~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 3 HEAKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp ---CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CcccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45556679999996 5899999998874
No 99
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=43.91 E-value=15 Score=32.17 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=19.7
Q ss_pred CCCcEEEEcCC--CchhHHHHHHHHHH
Q 048728 54 SQLKVIHVAGT--KGKGSTCTFTESIL 78 (536)
Q Consensus 54 ~~l~vI~VTGT--nGKTST~~ml~~IL 78 (536)
..+.+|.|+|. .||||++.+|+.-|
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999996 68999999998877
No 100
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=43.81 E-value=13 Score=33.81 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=21.0
Q ss_pred CCcEEEEcCCC--chhHHHHHHHHHHH
Q 048728 55 QLKVIHVAGTK--GKGSTCTFTESILR 79 (536)
Q Consensus 55 ~l~vI~VTGTn--GKTST~~ml~~IL~ 79 (536)
+-.+|+|+|-| ||||++.+|..++.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33589999976 69999999999885
No 101
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=43.68 E-value=27 Score=33.24 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=28.3
Q ss_pred CcEEEEcCC--CchhHHHHHHHHHHHhCCCC-EEEEeCC
Q 048728 56 LKVIHVAGT--KGKGSTCTFTESILRNCGFR-TGLFTSP 91 (536)
Q Consensus 56 l~vI~VTGT--nGKTST~~ml~~IL~~~G~k-~g~~tSp 91 (536)
-.+|.|.|- .||||.+..|...|...|++ +.+...|
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep 65 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREP 65 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCC
Confidence 357888885 47999999999999999998 4444445
No 102
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=42.09 E-value=25 Score=31.97 Aligned_cols=34 Identities=18% Similarity=-0.031 Sum_probs=25.6
Q ss_pred cEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 57 KVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 57 ~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
.++.|+|-| ||||++..+...+...|.++.+++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 589999976 5999999998766655666665554
No 103
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=41.91 E-value=28 Score=34.16 Aligned_cols=29 Identities=21% Similarity=0.047 Sum_probs=23.9
Q ss_pred CCCcEEEEcCC--CchhHHHHHHHHHHHhCC
Q 048728 54 SQLKVIHVAGT--KGKGSTCTFTESILRNCG 82 (536)
Q Consensus 54 ~~l~vI~VTGT--nGKTST~~ml~~IL~~~G 82 (536)
.+-.+|+|+|. .||||++.+|...|...|
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g 59 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKY 59 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcC
Confidence 34468999995 689999999999998654
No 104
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=41.63 E-value=20 Score=37.45 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=25.2
Q ss_pred CcEEEEcCCCchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 56 LKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 56 l~vI~VTGTnGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
+-+.|-+|| |||++...+...|...|.+..++.+|
T Consensus 48 ~li~G~aGT-GKT~ll~~~~~~l~~~~~~~il~~a~ 82 (459)
T 3upu_A 48 VTINGPAGT-GATTLTKFIIEALISTGETGIILAAP 82 (459)
T ss_dssp EEEECCTTS-CHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred EEEEeCCCC-CHHHHHHHHHHHHHhcCCceEEEecC
Confidence 345555565 99999999998888888744455555
No 105
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=41.54 E-value=23 Score=38.23 Aligned_cols=35 Identities=26% Similarity=0.208 Sum_probs=28.4
Q ss_pred CcEEEEc--CCCchhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 56 LKVIHVA--GTKGKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 56 l~vI~VT--GTnGKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
.+++-++ |--||||++..++..|.+.|+||.++..
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~ 44 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVST 44 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 3455555 5689999999999999999999988654
No 106
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=41.16 E-value=26 Score=37.59 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=29.0
Q ss_pred CcEEEEcC----CCchhHHHHHHHHHHHhCCCCEEEE
Q 048728 56 LKVIHVAG----TKGKGSTCTFTESILRNCGFRTGLF 88 (536)
Q Consensus 56 l~vI~VTG----TnGKTST~~ml~~IL~~~G~k~g~~ 88 (536)
.+.|-||| +=|||-|++-|..+|++.|+++...
T Consensus 3 ~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~~ 39 (535)
T 3nva_A 3 NKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTAV 39 (535)
T ss_dssp CEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEeCccccCcchHHHHHHHHHHHHHCCceEEEE
Confidence 46888998 5699999999999999999998653
No 107
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=40.65 E-value=9.3 Score=34.41 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=19.5
Q ss_pred cEEEEcCCC--chhHHHHHHHHHHH
Q 048728 57 KVIHVAGTK--GKGSTCTFTESILR 79 (536)
Q Consensus 57 ~vI~VTGTn--GKTST~~ml~~IL~ 79 (536)
++|+|.|-| ||||+..+|...+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 468888877 59999999999886
No 108
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=40.45 E-value=25 Score=34.61 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=22.0
Q ss_pred CCCcEEEEcCCC--chhHHHHHHHHHHH
Q 048728 54 SQLKVIHVAGTK--GKGSTCTFTESILR 79 (536)
Q Consensus 54 ~~l~vI~VTGTn--GKTST~~ml~~IL~ 79 (536)
.+-.+|+|+|-| ||||++.+|..++.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344699999976 59999999999986
No 109
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=40.06 E-value=20 Score=40.79 Aligned_cols=35 Identities=9% Similarity=-0.107 Sum_probs=31.3
Q ss_pred CCcEEEEcCC---CchhHHHHHHHHHHHhC-----CCCEEEEe
Q 048728 55 QLKVIHVAGT---KGKGSTCTFTESILRNC-----GFRTGLFT 89 (536)
Q Consensus 55 ~l~vI~VTGT---nGKTST~~ml~~IL~~~-----G~k~g~~t 89 (536)
..+.|-|+|| .|||+++.-|..+|+.. |++|+.|-
T Consensus 33 ~~~~l~I~gt~s~vGKT~vt~gL~r~l~~~~~~~~G~~V~~fK 75 (831)
T 4a0g_A 33 NHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLK 75 (831)
T ss_dssp SSCEEEEEESSSSSCHHHHHHHHHHHHHSCSSCCTTCEEEEEE
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHHHHhcccccCCceEEEEc
Confidence 4678999998 59999999999999999 99999886
No 110
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=39.61 E-value=39 Score=30.92 Aligned_cols=35 Identities=17% Similarity=0.157 Sum_probs=26.1
Q ss_pred CCcEEEEcCCCchhHHHHHHHHHHHh--CCCCEEEEe
Q 048728 55 QLKVIHVAGTKGKGSTCTFTESILRN--CGFRTGLFT 89 (536)
Q Consensus 55 ~l~vI~VTGTnGKTST~~ml~~IL~~--~G~k~g~~t 89 (536)
+-+++.++|.-|+|-|++++..+.+. .|+++.++.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 34689999997666666666666554 899998876
No 111
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=39.57 E-value=33 Score=32.66 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=25.1
Q ss_pred CcEEEEcC--CCchhHHHHHHHHHHHhCCCCEE
Q 048728 56 LKVIHVAG--TKGKGSTCTFTESILRNCGFRTG 86 (536)
Q Consensus 56 l~vI~VTG--TnGKTST~~ml~~IL~~~G~k~g 86 (536)
..+|.|+| -.||||.+..|+.-|...|+.+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i 36 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVI 36 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 35677777 35999999999999998888664
No 112
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=39.33 E-value=16 Score=33.21 Aligned_cols=20 Identities=15% Similarity=0.323 Sum_probs=17.1
Q ss_pred cEEEEcCCC--chhHHHHHHHH
Q 048728 57 KVIHVAGTK--GKGSTCTFTES 76 (536)
Q Consensus 57 ~vI~VTGTn--GKTST~~ml~~ 76 (536)
.+|+|+|.+ ||||++.+|+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 479999975 89999999876
No 113
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=39.17 E-value=34 Score=31.84 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=29.3
Q ss_pred cEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 57 KVIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
.+|.+.|. .||||.+..|..-|...|+++.+..-|
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p 43 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREP 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCC
Confidence 47888885 479999999999999999988665555
No 114
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=38.85 E-value=15 Score=33.05 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=18.9
Q ss_pred cEEEEcCCC--chhHHHHHHHHHH
Q 048728 57 KVIHVAGTK--GKGSTCTFTESIL 78 (536)
Q Consensus 57 ~vI~VTGTn--GKTST~~ml~~IL 78 (536)
.+|+|+|-| ||||++.+|...+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999977 7999999998875
No 115
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=38.54 E-value=20 Score=31.01 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=18.5
Q ss_pred cEEEEcCC--CchhHHHHHHHHHH
Q 048728 57 KVIHVAGT--KGKGSTCTFTESIL 78 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~IL 78 (536)
.+|.|+|. .||||++.+|+..|
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 57889986 57999999998776
No 116
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=38.50 E-value=19 Score=35.82 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=23.7
Q ss_pred CCCcEEEEcCCC--chhHHHHHHHHHHHhC
Q 048728 54 SQLKVIHVAGTK--GKGSTCTFTESILRNC 81 (536)
Q Consensus 54 ~~l~vI~VTGTn--GKTST~~ml~~IL~~~ 81 (536)
.+-.+|+|.|-| ||||++.+|..+|...
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~ 117 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARW 117 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcccc
Confidence 445699999976 8999999999999864
No 117
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=38.34 E-value=20 Score=38.85 Aligned_cols=34 Identities=24% Similarity=0.538 Sum_probs=25.4
Q ss_pred cEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 57 KVIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
+++.|+|- .|||||...+...|...|+++.+ .+|
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~-~Ap 240 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGL-CAP 240 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE-EES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE-ecC
Confidence 45556653 38999999999999999987754 444
No 118
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=38.28 E-value=28 Score=31.19 Aligned_cols=34 Identities=21% Similarity=0.150 Sum_probs=25.6
Q ss_pred cEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 57 KVIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
.+|.|+|. .||||.+..|+.-|...| ++.....|
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~~~~ 40 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLTEWN 40 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEEETT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEecCC
Confidence 47888884 799999999999997766 55433333
No 119
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=38.16 E-value=20 Score=32.23 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=18.8
Q ss_pred EEEEcCC--CchhHHHHHHHHHH
Q 048728 58 VIHVAGT--KGKGSTCTFTESIL 78 (536)
Q Consensus 58 vI~VTGT--nGKTST~~ml~~IL 78 (536)
+|+|+|. .||||++.+|+..|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 8999997 59999999998877
No 120
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=38.09 E-value=17 Score=34.41 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=20.9
Q ss_pred CCcEEEEcCC--CchhHHHHHHHHHHH
Q 048728 55 QLKVIHVAGT--KGKGSTCTFTESILR 79 (536)
Q Consensus 55 ~l~vI~VTGT--nGKTST~~ml~~IL~ 79 (536)
+..+|+|+|. .||||++.+|+..|.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4468999996 599999999988775
No 121
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=37.26 E-value=12 Score=33.87 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=25.9
Q ss_pred EEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 58 VIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 58 vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
+|.|.|- .||||.+..|...|...|+++..+.-|
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~ 37 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFP 37 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence 4555553 499999999999999888887766544
No 122
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=37.13 E-value=17 Score=37.23 Aligned_cols=29 Identities=14% Similarity=0.055 Sum_probs=25.2
Q ss_pred CCCchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 63 GTKGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 63 GTnGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
|-.||||++..++..|...|+||.++..|
T Consensus 11 GG~GKTt~a~~la~~la~~g~~vllvd~~ 39 (374)
T 3igf_A 11 SGVARTKIAIAAAKLLASQGKRVLLAGLA 39 (374)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred CCCcHHHHHHHHHHHHHHCCCCeEEEeCC
Confidence 55689999999999999999999887654
No 123
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=37.05 E-value=34 Score=30.06 Aligned_cols=28 Identities=29% Similarity=0.443 Sum_probs=23.1
Q ss_pred cEEEEcCC--CchhHHHHHHHHHHHhCCCC
Q 048728 57 KVIHVAGT--KGKGSTCTFTESILRNCGFR 84 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~IL~~~G~k 84 (536)
.+|.|+|. .||||.+..|+.-|...|++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~ 33 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVN 33 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcc
Confidence 47888885 69999999999999877743
No 124
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=36.69 E-value=29 Score=32.18 Aligned_cols=33 Identities=27% Similarity=0.325 Sum_probs=26.4
Q ss_pred cEEEEcCCCchhHHHHHHHHHHHh--CCCCEEEEe
Q 048728 57 KVIHVAGTKGKGSTCTFTESILRN--CGFRTGLFT 89 (536)
Q Consensus 57 ~vI~VTGTnGKTST~~ml~~IL~~--~G~k~g~~t 89 (536)
-.|+|-+-+|||-|++-+.-.+++ +|+||.++.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQ 63 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQ 63 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 357777778899999999999887 588998764
No 125
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=35.61 E-value=22 Score=32.49 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=18.5
Q ss_pred cEEEEcCCC--chhHHHHHHHHHH
Q 048728 57 KVIHVAGTK--GKGSTCTFTESIL 78 (536)
Q Consensus 57 ~vI~VTGTn--GKTST~~ml~~IL 78 (536)
.+|+|+|.+ ||||.+.+|...|
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999975 6999999998876
No 126
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=35.39 E-value=54 Score=28.39 Aligned_cols=37 Identities=16% Similarity=0.106 Sum_probs=28.8
Q ss_pred CCcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 55 QLKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 55 ~l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
.-..+.+.|-+ ||||...++...+...|+++..+...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~ 73 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAA 73 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH
Confidence 34678888865 79999999999998888776655443
No 127
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=34.73 E-value=2e+02 Score=24.04 Aligned_cols=102 Identities=19% Similarity=0.169 Sum_probs=62.6
Q ss_pred cEEEEECCCCHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCcccCccccCC--CcEEEEEecCCCCChhhh
Q 048728 324 LVFYLDGAHSPESMEICARWFSLAIKEENQQETFDFQPPNSSGSSNGLPQRQHDGKIRKN--SAQILLFNCMSVRDPQLL 401 (536)
Q Consensus 324 ~~vilD~AHnp~si~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ilvfg~~~drd~~~~ 401 (536)
+.+-++|-=+++.++.+...+...++. ..+ -+.++.+....+-+...+
T Consensus 22 l~v~~~G~lt~~d~~~l~~~l~~~l~~------------------------------~~~~~i~ll~~~~~f~G~~~~a~ 71 (126)
T 2q3l_A 22 LAFKAVGKLTHEDYEQMTPLLESALAG------------------------------IKTPEIVALIDITELDGLSLHAA 71 (126)
T ss_dssp EEEEEEEEECHHHHHHHHHHHHHHTTT------------------------------CCSSCEEEEEEEEEEEEECHHHH
T ss_pred EEEEEEeeECHHHHHHHHHHHHHHHHh------------------------------CCCceEEEEEEecCCCCCCHHHH
Confidence 456677877889999888866655443 122 233333333333456666
Q ss_pred hHHHHHHHHhcCCcccEEEEecCCcccccCCCCCCCCCcchhchhHHHHHHHHHHHhccCccccccccCCCCcccccccc
Q 048728 402 LPSLMKTCARHGVYFKKALFVPNASVYNKVGSHALPPTETQIDLSWQFALQRVWENLMLGDKAVEAKNTDNASEDVKDYT 481 (536)
Q Consensus 402 l~~l~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 481 (536)
...+.-.. ++...|+++-++.+. .|++.+.++..-+.+
T Consensus 72 ~~d~k~~~-~h~~~~~RiAvV~d~--------------------~W~~~~~~~~~~~~~--------------------- 109 (126)
T 2q3l_A 72 WDDLKLGL-KHGKEFKRVAIIGQG--------------------ELQEWATRVANWFTP--------------------- 109 (126)
T ss_dssp HHHHHHHH-HHGGGEEEEEEECCS--------------------HHHHHHHHHHHHHCS---------------------
T ss_pred HHHHHhhh-hHHhcCCEEEEEcCh--------------------HHHHHHHHHHhhccC---------------------
Confidence 55543111 222369999988763 477766666554433
Q ss_pred ccccCCCCCceEeCCHHHHHHHH
Q 048728 482 ELSARSCENSAVFSSLPLAIKWL 504 (536)
Q Consensus 482 ~~~~~~~~~~~v~~si~~Ai~~~ 504 (536)
..+..|++..+|.+|+
T Consensus 110 -------~evk~F~~~~~A~~Wl 125 (126)
T 2q3l_A 110 -------GEFKFFEDKRDALDWL 125 (126)
T ss_dssp -------SEEEEESCHHHHHHHH
T ss_pred -------CceeccCCHHHHHHHh
Confidence 1578899999999997
No 128
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=34.36 E-value=43 Score=31.53 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=22.9
Q ss_pred CcEEEEcCCCchhHHHHHHHHH--HHhCCCCEEEEe
Q 048728 56 LKVIHVAGTKGKGSTCTFTESI--LRNCGFRTGLFT 89 (536)
Q Consensus 56 l~vI~VTGTnGKTST~~ml~~I--L~~~G~k~g~~t 89 (536)
-.++-|||.-|+|-|+.++..+ +...|.++.++.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 4689999995555555555544 445788887664
No 129
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=33.78 E-value=49 Score=29.79 Aligned_cols=29 Identities=28% Similarity=0.236 Sum_probs=24.4
Q ss_pred CcEEEEcCC--CchhHHHHHHHHHHHhCCCC
Q 048728 56 LKVIHVAGT--KGKGSTCTFTESILRNCGFR 84 (536)
Q Consensus 56 l~vI~VTGT--nGKTST~~ml~~IL~~~G~k 84 (536)
-.+|.|+|- .||||+..+|+..|...|..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~ 55 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKL 55 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCce
Confidence 368899986 57999999999999877764
No 130
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=33.72 E-value=26 Score=31.54 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=19.1
Q ss_pred EEEEcCCCc--hhHHHHHHHHHHH
Q 048728 58 VIHVAGTKG--KGSTCTFTESILR 79 (536)
Q Consensus 58 vI~VTGTnG--KTST~~ml~~IL~ 79 (536)
.++|+|-|| |||+..+|..++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999887 9999999999884
No 131
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=32.83 E-value=27 Score=31.58 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=19.7
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHH
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESIL 78 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL 78 (536)
-.+|+|+|-+ ||||++.+|...+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999976 6999999999887
No 132
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=32.67 E-value=20 Score=31.20 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=18.3
Q ss_pred cEEEEcCCC--chhHHHHHHHHHH
Q 048728 57 KVIHVAGTK--GKGSTCTFTESIL 78 (536)
Q Consensus 57 ~vI~VTGTn--GKTST~~ml~~IL 78 (536)
.+|+|+|.+ ||||++.+|+..|
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468899875 7999999998876
No 133
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=32.60 E-value=26 Score=32.81 Aligned_cols=33 Identities=9% Similarity=0.107 Sum_probs=26.3
Q ss_pred CcEEEEc--CCCchhHHHHHHHHHHHhCCCCEEEEe
Q 048728 56 LKVIHVA--GTKGKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 56 l~vI~VT--GTnGKTST~~ml~~IL~~~G~k~g~~t 89 (536)
..++.++ |-.||||++.-+...|. .|+++.++.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd 48 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN 48 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEe
Confidence 3455555 57899999999999999 999987764
No 134
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=32.17 E-value=20 Score=33.32 Aligned_cols=24 Identities=8% Similarity=0.023 Sum_probs=14.9
Q ss_pred CcEEEEcCCC--chhHHHHHHH-HHHH
Q 048728 56 LKVIHVAGTK--GKGSTCTFTE-SILR 79 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~-~IL~ 79 (536)
-.+|+|+|-| ||||+..+|. ..+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC----
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 3589999987 6999999998 7764
No 135
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=30.93 E-value=41 Score=30.63 Aligned_cols=32 Identities=19% Similarity=0.150 Sum_probs=25.6
Q ss_pred cEEEEcCC--CchhHHHHHHHHHHH-hCCCCEEEE
Q 048728 57 KVIHVAGT--KGKGSTCTFTESILR-NCGFRTGLF 88 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~IL~-~~G~k~g~~ 88 (536)
.+|.|+|. .||||.+.+|+..|. ..|+++.++
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~ 60 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRL 60 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEE
Confidence 57888885 689999999999998 778765443
No 136
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=30.14 E-value=26 Score=34.64 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=31.5
Q ss_pred CCcEEEEcCCCc--hhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecC
Q 048728 55 QLKVIHVAGTKG--KGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDIS 108 (536)
Q Consensus 55 ~l~vI~VTGTnG--KTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is 108 (536)
+++++.|+|-+| |||....|.... .|+|++++..- + -.|.|||.++.
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~--~~~~~aVi~~d----~-G~i~idg~~l~ 51 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIENE----F-GEVSVDDQLIG 51 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEECSS----C-CSCCEEEEEEC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc--CCCcEEEEEec----C-cccCccHHHHh
Confidence 578999999775 777666555543 58888876532 1 14677887765
No 137
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=29.90 E-value=48 Score=31.87 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=25.9
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHHhC-CCCEEEEe
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILRNC-GFRTGLFT 89 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~~~-G~k~g~~t 89 (536)
-.+++|+|-| ||||.+..+...+... |.++.+++
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3588888876 8999999988888755 76665554
No 138
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=29.86 E-value=47 Score=29.88 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=20.4
Q ss_pred cEEEEcCCCchhHHHHHHHHH--HHhCCCCEEEEe
Q 048728 57 KVIHVAGTKGKGSTCTFTESI--LRNCGFRTGLFT 89 (536)
Q Consensus 57 ~vI~VTGTnGKTST~~ml~~I--L~~~G~k~g~~t 89 (536)
.++-++|.-|+|-|+.++..+ +...|.++.++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~ 38 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFK 38 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 477889986555555554443 334788776654
No 139
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=29.71 E-value=45 Score=35.97 Aligned_cols=34 Identities=26% Similarity=0.454 Sum_probs=29.9
Q ss_pred cEEEEc-CC---CchhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 57 KVIHVA-GT---KGKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 57 ~vI~VT-GT---nGKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
+.|-|| || -|||.+++-|..+|+..|++|..|-.
T Consensus 13 ~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~~k~ 50 (550)
T 1vco_A 13 KYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKI 50 (550)
T ss_dssp EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred eEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeEeec
Confidence 678888 54 69999999999999999999988765
No 140
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=29.47 E-value=32 Score=31.40 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=20.5
Q ss_pred CCCcEEEEcCC--CchhHHHHHHHHHH
Q 048728 54 SQLKVIHVAGT--KGKGSTCTFTESIL 78 (536)
Q Consensus 54 ~~l~vI~VTGT--nGKTST~~ml~~IL 78 (536)
..-.+|+|||- .||||++.+|+..|
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc
Confidence 34468999985 69999999999865
No 141
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=29.41 E-value=35 Score=31.18 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=19.5
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHH
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILR 79 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~ 79 (536)
-.+|+|.|-+ ||||++.+|...+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3589999987 69999999887764
No 142
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=29.37 E-value=37 Score=31.55 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=20.2
Q ss_pred CCCcEEEEcCCC--chhHHHHHHHHHH
Q 048728 54 SQLKVIHVAGTK--GKGSTCTFTESIL 78 (536)
Q Consensus 54 ~~l~vI~VTGTn--GKTST~~ml~~IL 78 (536)
.+..+|+|+|.+ ||||++.+|+..|
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 445689999975 7999999988866
No 143
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=29.33 E-value=30 Score=31.98 Aligned_cols=34 Identities=18% Similarity=0.172 Sum_probs=26.2
Q ss_pred cEEEEcC--CCchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 57 KVIHVAG--TKGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 57 ~vI~VTG--TnGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
+.|.|-| -.||||.+.+|..-|. .|+++.+..-|
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~~eP 38 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMTREP 38 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEEESS
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEeeCC
Confidence 3566666 3689999999999996 48888766556
No 144
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=29.32 E-value=22 Score=31.88 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=18.7
Q ss_pred cEEEEcCCC--chhHHHHHHHHHH
Q 048728 57 KVIHVAGTK--GKGSTCTFTESIL 78 (536)
Q Consensus 57 ~vI~VTGTn--GKTST~~ml~~IL 78 (536)
.+|+|+|-+ ||||++.+|...+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999976 7999999988776
No 145
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=29.31 E-value=31 Score=29.89 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=18.6
Q ss_pred cEEEEcCC--CchhHHHHHHHHHH
Q 048728 57 KVIHVAGT--KGKGSTCTFTESIL 78 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~IL 78 (536)
++|.|+|. .||||.+.+|+..|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 46888885 69999999999877
No 146
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=28.70 E-value=72 Score=30.52 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=19.7
Q ss_pred EEEEcCCCchhHHHHHHHHHHHhCCC
Q 048728 58 VIHVAGTKGKGSTCTFTESILRNCGF 83 (536)
Q Consensus 58 vI~VTGTnGKTST~~ml~~IL~~~G~ 83 (536)
+.|=+|| |||+++..++..|...++
T Consensus 72 l~G~~Gt-GKT~la~~la~~l~~~~~ 96 (309)
T 3syl_A 72 FTGNPGT-GKTTVALKMAGLLHRLGY 96 (309)
T ss_dssp EEECTTS-SHHHHHHHHHHHHHHTTS
T ss_pred EECCCCC-CHHHHHHHHHHHHHhcCC
Confidence 4455555 999999999999988665
No 147
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=28.50 E-value=61 Score=32.43 Aligned_cols=36 Identities=14% Similarity=0.277 Sum_probs=30.1
Q ss_pred CCcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 55 QLKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 55 ~l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
...+|+|+|.. ||||+...|...+...|.+++++..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~ 110 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAV 110 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEee
Confidence 36799999976 6999999999999888888877653
No 148
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=28.22 E-value=53 Score=30.91 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=28.6
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHHhC----CCCEEEEeCC
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILRNC----GFRTGLFTSP 91 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~~~----G~k~g~~tSp 91 (536)
-.+|.|.|-. ||||.+..|..-|... |+++.+..-|
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep 66 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREP 66 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCC
Confidence 3588888865 6999999999999988 9888655555
No 149
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=28.17 E-value=55 Score=35.17 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=26.4
Q ss_pred EEEEc---CCCchhHHHHHHHHHHHhCCCCEEEEe
Q 048728 58 VIHVA---GTKGKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 58 vI~VT---GTnGKTST~~ml~~IL~~~G~k~g~~t 89 (536)
+|.|+ |-.||||++.-++..|...|.++.++.
T Consensus 328 ~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD 362 (589)
T 1ihu_A 328 GLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTT 362 (589)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEe
Confidence 44444 567999999999999999999998763
No 150
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=28.01 E-value=48 Score=31.76 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=21.8
Q ss_pred CCcEEEEcCCC--chhHHHHHHHHHHHh
Q 048728 55 QLKVIHVAGTK--GKGSTCTFTESILRN 80 (536)
Q Consensus 55 ~l~vI~VTGTn--GKTST~~ml~~IL~~ 80 (536)
+-.+|+|+|-| ||||+..++...+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 44589999976 899999999998875
No 151
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=27.87 E-value=35 Score=36.85 Aligned_cols=30 Identities=23% Similarity=0.162 Sum_probs=22.1
Q ss_pred CCCCcEEEEcCCCchhHHH-HHHHHHHHhCCC
Q 048728 53 ISQLKVIHVAGTKGKGSTC-TFTESILRNCGF 83 (536)
Q Consensus 53 ~~~l~vI~VTGTnGKTST~-~ml~~IL~~~G~ 83 (536)
...+-|+|-+|| |||+|. .-+..++...|.
T Consensus 22 ~~~~lV~a~aGs-GKT~~l~~ri~~l~~~~~~ 52 (647)
T 3lfu_A 22 RSNLLVLAGAGS-GKTRVLVHRIAWLMSVENC 52 (647)
T ss_dssp SSCEEEEECTTS-CHHHHHHHHHHHHHHTSCC
T ss_pred CCCEEEEECCCC-CHHHHHHHHHHHHHHhCCC
Confidence 345678899998 999985 457777776553
No 152
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=27.85 E-value=46 Score=33.63 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=24.7
Q ss_pred cEEEEcCCCc--hhHHHHHHHHHHHhC-CCCEEEEeC
Q 048728 57 KVIHVAGTKG--KGSTCTFTESILRNC-GFRTGLFTS 90 (536)
Q Consensus 57 ~vI~VTGTnG--KTST~~ml~~IL~~~-G~k~g~~tS 90 (536)
.+|+|+|-|| ||||...+...+... |.++.....
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed 160 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIED 160 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccC
Confidence 3899999875 999999998888764 444433333
No 153
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=27.32 E-value=53 Score=32.47 Aligned_cols=43 Identities=7% Similarity=-0.038 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHcCCcccCCCCcEEEEcCC--CchhHHHHHHHHHHHhC
Q 048728 36 RFELLSDYLKILDLDVAISQLKVIHVAGT--KGKGSTCTFTESILRNC 81 (536)
Q Consensus 36 ~l~~~~~~L~~Lg~~~p~~~l~vI~VTGT--nGKTST~~ml~~IL~~~ 81 (536)
.++.+..++...-.+ ...+.|.|+|- .|||+++..+..-+...
T Consensus 28 ~~~~l~~~l~~~~~~---~~~~~vll~G~~G~GKT~la~~l~~~~~~~ 72 (384)
T 2qby_B 28 ILRDAAIAIRYFVKN---EVKFSNLFLGLTGTGKTFVSKYIFNEIEEV 72 (384)
T ss_dssp HHHHHHHHHHHHHTT---CCCCEEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC---CCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 466666666654211 22245666663 48999999988887654
No 154
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=27.12 E-value=60 Score=30.28 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=27.5
Q ss_pred CCcEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 55 QLKVIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 55 ~l~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
+-.+|.|.|- .||||.+.+|...|.. |+++....-|
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~p 62 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREP 62 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEECTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeecCC
Confidence 3457888886 5799999999999998 8877544333
No 155
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=26.59 E-value=53 Score=31.21 Aligned_cols=33 Identities=24% Similarity=0.131 Sum_probs=25.6
Q ss_pred CCcEE-EEcCCCchhHHHHHHHHHHHhCCCCEEE
Q 048728 55 QLKVI-HVAGTKGKGSTCTFTESILRNCGFRTGL 87 (536)
Q Consensus 55 ~l~vI-~VTGTnGKTST~~ml~~IL~~~G~k~g~ 87 (536)
+++++ .=.|-.||||++.-++..|...|+++.+
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v 39 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMA 39 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEE
Confidence 34433 3448899999999999999999999854
No 156
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=26.46 E-value=33 Score=31.13 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=22.9
Q ss_pred CCcEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEe
Q 048728 55 QLKVIHVAGT--KGKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 55 ~l~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~t 89 (536)
+.++|.|+|- .||||+..-+..-+... ++++.+.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~ 64 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAML 64 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEe
Confidence 4567778774 79998877666555433 6776654
No 157
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=26.32 E-value=45 Score=29.60 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=18.8
Q ss_pred CCcEEEEcCC--CchhHHHHHHHHH
Q 048728 55 QLKVIHVAGT--KGKGSTCTFTESI 77 (536)
Q Consensus 55 ~l~vI~VTGT--nGKTST~~ml~~I 77 (536)
+.+.|.|+|. .||||++.+|+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999997 4799999999886
No 158
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=26.17 E-value=50 Score=28.75 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=20.2
Q ss_pred CCCcEEEEcCC--CchhHHHHHHHHHH
Q 048728 54 SQLKVIHVAGT--KGKGSTCTFTESIL 78 (536)
Q Consensus 54 ~~l~vI~VTGT--nGKTST~~ml~~IL 78 (536)
.+-.+|+|+|- .||||++.+|...|
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 44568999997 57999999998876
No 159
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=26.11 E-value=60 Score=32.21 Aligned_cols=35 Identities=23% Similarity=0.277 Sum_probs=30.7
Q ss_pred cEEEEcC--CCchhHHHHHHHHHHHhCCCCEEEEeCC
Q 048728 57 KVIHVAG--TKGKGSTCTFTESILRNCGFRTGLFTSP 91 (536)
Q Consensus 57 ~vI~VTG--TnGKTST~~ml~~IL~~~G~k~g~~tSp 91 (536)
.+|.+-| +.||||+...|..-|...|++|..+.-|
T Consensus 87 vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~P 123 (304)
T 3czq_A 87 VMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKP 123 (304)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCc
Confidence 3667776 7899999999999999999999888888
No 160
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=26.01 E-value=42 Score=28.91 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=17.7
Q ss_pred EEEEcCC--CchhHHHHHHHHHH
Q 048728 58 VIHVAGT--KGKGSTCTFTESIL 78 (536)
Q Consensus 58 vI~VTGT--nGKTST~~ml~~IL 78 (536)
.|.|+|. .||||.+.+|+.-|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 5778885 69999999999877
No 161
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=25.71 E-value=18 Score=34.81 Aligned_cols=38 Identities=13% Similarity=0.337 Sum_probs=26.6
Q ss_pred CCcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecC
Q 048728 55 QLKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDIS 108 (536)
Q Consensus 55 ~l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is 108 (536)
+-.+++|.|-| ||||...+|..++.. .| .|.++|.++.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G------------~I~i~g~~i~ 84 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFYDA----EG------------DIKIGGKNVN 84 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCC----EE------------EEEETTEEGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC----Ce------------EEEECCEEhh
Confidence 33589999988 688888877655421 12 5788898764
No 162
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=25.39 E-value=43 Score=32.37 Aligned_cols=36 Identities=31% Similarity=0.329 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcCCcccCCCCcEEEEcC--CCchhHHHHHH
Q 048728 37 FELLSDYLKILDLDVAISQLKVIHVAG--TKGKGSTCTFT 74 (536)
Q Consensus 37 l~~~~~~L~~Lg~~~p~~~l~vI~VTG--TnGKTST~~ml 74 (536)
+++++..+..+|.. ...++.|+|.| ..||||+...|
T Consensus 7 ~~~l~~~~~~~~~~--~~~~~~I~vvG~~~~GKSTlln~l 44 (315)
T 1jwy_B 7 INKLQDVFNTLGSD--PLDLPQIVVVGSQSSGKSSVLENI 44 (315)
T ss_dssp HHHHHHHTTTSSSC--TTCCCEEEEEECSSSSHHHHHHHH
T ss_pred HHHHHHHHHHcCCC--CCCCCeEEEEcCCCCCHHHHHHHH
Confidence 45556666666643 45678899998 46999876544
No 163
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=25.32 E-value=32 Score=31.56 Aligned_cols=21 Identities=19% Similarity=0.558 Sum_probs=15.7
Q ss_pred EEEEcCCCchhHHHHHHHHHHH
Q 048728 58 VIHVAGTKGKGSTCTFTESILR 79 (536)
Q Consensus 58 vI~VTGTnGKTST~~ml~~IL~ 79 (536)
++|..|+ ||||.+..|+.-|.
T Consensus 10 l~G~~Gs-GKsT~~~~La~~l~ 30 (222)
T 1zak_A 10 ISGAPAS-GKGTQCELIKTKYQ 30 (222)
T ss_dssp EEESTTS-SHHHHHHHHHHHHC
T ss_pred EECCCCC-CHHHHHHHHHHHhC
Confidence 4445554 99999999988773
No 164
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=25.10 E-value=45 Score=29.94 Aligned_cols=23 Identities=26% Similarity=0.180 Sum_probs=19.4
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHH
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESIL 78 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL 78 (536)
.++|.|+|-. ||||.+..|...|
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999975 7999999998887
No 165
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=25.02 E-value=38 Score=29.86 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=18.4
Q ss_pred cEEEEcCC--CchhHHHHHHHHHH
Q 048728 57 KVIHVAGT--KGKGSTCTFTESIL 78 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~IL 78 (536)
++|.|+|. .||||++.+|+.-|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 35888885 79999999998877
No 166
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=24.89 E-value=48 Score=29.03 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=18.7
Q ss_pred cEEEEcCC--CchhHHHHHHHHHH
Q 048728 57 KVIHVAGT--KGKGSTCTFTESIL 78 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~IL 78 (536)
++|.|+|. .||||.+.+|+.-|
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 58899986 68999999998866
No 167
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=24.45 E-value=1e+02 Score=28.87 Aligned_cols=36 Identities=11% Similarity=0.078 Sum_probs=27.1
Q ss_pred CCCcEEEEcCCCchhHHHHHHHHHHH--hCCCCEEEEe
Q 048728 54 SQLKVIHVAGTKGKGSTCTFTESILR--NCGFRTGLFT 89 (536)
Q Consensus 54 ~~l~vI~VTGTnGKTST~~ml~~IL~--~~G~k~g~~t 89 (536)
.+-.+.-++|+-|||-|++++..+.+ .+|.++.++.
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 34468889999777777777777766 4788988876
No 168
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=24.38 E-value=93 Score=33.00 Aligned_cols=34 Identities=24% Similarity=0.203 Sum_probs=29.0
Q ss_pred CCCcEEEEcCC------CchhHHHHHHHHHHHhCCCCEEE
Q 048728 54 SQLKVIHVAGT------KGKGSTCTFTESILRNCGFRTGL 87 (536)
Q Consensus 54 ~~l~vI~VTGT------nGKTST~~ml~~IL~~~G~k~g~ 87 (536)
.+-+.|-||+. -|||||+-=|.+.|.+.|.++..
T Consensus 41 ~~GklIlVTaItPTPaGEGKtTttiGL~~aL~~lgk~~~~ 80 (543)
T 3do6_A 41 EDGKLILVTAVTPTPAGEGKTTTSIGLSMSLNRIGKKSIV 80 (543)
T ss_dssp CCCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEEEecCCCCCCCCccchHHHHHHHHHhcCCeeEE
Confidence 34578999987 59999999999999999998753
No 169
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=24.20 E-value=41 Score=31.85 Aligned_cols=39 Identities=26% Similarity=0.466 Sum_probs=27.9
Q ss_pred CCCcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecC
Q 048728 54 SQLKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDIS 108 (536)
Q Consensus 54 ~~l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is 108 (536)
.+ .+++|.|-| ||||...+|..+++- ..| +|.++|.++.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~p---~~G------------~i~~~g~~~~ 63 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIVKP---DRG------------EVRLNGADIT 63 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSSCC---SEE------------EEEETTEECT
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCCCC---Cce------------EEEECCEECC
Confidence 45 789999988 688888887766532 112 5788888764
No 170
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=24.07 E-value=1.5e+02 Score=26.19 Aligned_cols=34 Identities=15% Similarity=0.073 Sum_probs=26.0
Q ss_pred cEEEEcCC--CchhHHHHHHHHHHHhCCCCEEEEeC
Q 048728 57 KVIHVAGT--KGKGSTCTFTESILRNCGFRTGLFTS 90 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~~tS 90 (536)
+.|.+.|- .|||+.+..+..-+...|.++..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence 56777875 48999999999988887877655443
No 171
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=23.65 E-value=46 Score=29.64 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=21.9
Q ss_pred cEEEEcCC--CchhHHHHHHHHHHHhCCCCEEE
Q 048728 57 KVIHVAGT--KGKGSTCTFTESILRNCGFRTGL 87 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~ 87 (536)
.+|.|+|- .||||.+.+|+.-| .|+++..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~ 35 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI--PANTIKY 35 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS--CGGGEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH--CCCceEE
Confidence 47888885 69999999998877 3565543
No 172
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=23.05 E-value=62 Score=33.47 Aligned_cols=34 Identities=21% Similarity=0.104 Sum_probs=23.6
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEe
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFT 89 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~t 89 (536)
-.+|+|+|-| |||||...+...+.....++.+..
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~e 202 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE 202 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEec
Confidence 3589999976 699999988888764433343333
No 173
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=22.80 E-value=23 Score=34.08 Aligned_cols=39 Identities=21% Similarity=0.367 Sum_probs=27.6
Q ss_pred CCcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecC
Q 048728 55 QLKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDIS 108 (536)
Q Consensus 55 ~l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is 108 (536)
+-.+++|.|-| ||||...+|..+++- ..| +|.++|.++.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p---~~G------------~i~~~g~~~~ 71 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEKP---SEG------------AIIVNGQNIN 71 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCC---SEE------------EEEETTEECC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC---CCc------------EEEECCEEcc
Confidence 34589999998 688888887666542 112 6788888764
No 174
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=21.64 E-value=52 Score=29.42 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=19.3
Q ss_pred CCCcEEEEcCC--CchhHHHHHHHHHH
Q 048728 54 SQLKVIHVAGT--KGKGSTCTFTESIL 78 (536)
Q Consensus 54 ~~l~vI~VTGT--nGKTST~~ml~~IL 78 (536)
.+..+|.|+|. .||||.+.+|..-|
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45568999985 57999998887654
No 175
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=21.33 E-value=33 Score=33.08 Aligned_cols=39 Identities=15% Similarity=0.296 Sum_probs=27.9
Q ss_pred CcEEEEcCCCc--hhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCH
Q 048728 56 LKVIHVAGTKG--KGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISE 109 (536)
Q Consensus 56 l~vI~VTGTnG--KTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~ 109 (536)
-.+++|.|-|| |||...+|..+++.. +. .|.++|.++..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~p~--------~G-------~I~~~g~~~~~ 77 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLSPS--------HG-------ECHLLGQNLNS 77 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSCCS--------SC-------EEEETTEETTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCC--------Cc-------EEEECCEECCc
Confidence 35899999885 888888887766421 11 68889988753
No 176
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=21.28 E-value=64 Score=28.93 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=18.6
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHH
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESIL 78 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL 78 (536)
.++|.|.|.. ||||++..|+..|
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4577777754 8999999999887
No 177
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=21.26 E-value=60 Score=30.26 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=21.4
Q ss_pred CCCCcEEEEcCC--CchhHHHHHHHHHHHhCCCC
Q 048728 53 ISQLKVIHVAGT--KGKGSTCTFTESILRNCGFR 84 (536)
Q Consensus 53 ~~~l~vI~VTGT--nGKTST~~ml~~IL~~~G~k 84 (536)
+..+-.||+||. .||||++.+++. .|+.
T Consensus 6 ~~~~~~iglTGgigsGKStv~~~l~~----~g~~ 35 (210)
T 4i1u_A 6 HHHMYAIGLTGGIGSGKTTVADLFAA----RGAS 35 (210)
T ss_dssp CCSCCEEEEECCTTSCHHHHHHHHHH----TTCE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHH----CCCc
Confidence 345678999995 689999998765 4764
No 178
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=20.90 E-value=59 Score=29.26 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=19.5
Q ss_pred CCCcEEEEcCC--CchhHHHHHHHHHH
Q 048728 54 SQLKVIHVAGT--KGKGSTCTFTESIL 78 (536)
Q Consensus 54 ~~l~vI~VTGT--nGKTST~~ml~~IL 78 (536)
.+..+|+|+|. .||||.+.+|...+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34568999995 57999999887765
No 179
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=20.77 E-value=40 Score=32.51 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=27.6
Q ss_pred CCcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecC
Q 048728 55 QLKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDIS 108 (536)
Q Consensus 55 ~l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is 108 (536)
+-.+++|.|-| ||||...+|..+++- ..| .|.++|.++.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~p---~~G------------~I~~~g~~i~ 89 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLEDF---DEG------------EIIIDGINLK 89 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCC---SEE------------EEEETTEESS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCCC---CCc------------EEEECCEECC
Confidence 34589999998 688888887666532 112 6788898763
No 180
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=20.75 E-value=49 Score=30.01 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=21.1
Q ss_pred CCcEEEEcCCC--chhHHHHHHHHHHH
Q 048728 55 QLKVIHVAGTK--GKGSTCTFTESILR 79 (536)
Q Consensus 55 ~l~vI~VTGTn--GKTST~~ml~~IL~ 79 (536)
+-.+++|.|-| ||||+..+|..++.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34689999987 79999999999885
No 181
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=20.73 E-value=41 Score=31.75 Aligned_cols=38 Identities=24% Similarity=0.550 Sum_probs=26.5
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecC
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDIS 108 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is 108 (536)
-.+++|.|-| ||||...+|.-+++- ..| .|.++|.++.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G------------~i~~~g~~~~ 71 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLVRA---QKG------------KIIFNGQDIT 71 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC---SEE------------EEEETTEECT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC---CCc------------eEEECCEECC
Confidence 3589999988 688887777655531 112 5788898774
No 182
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=20.65 E-value=41 Score=32.11 Aligned_cols=38 Identities=24% Similarity=0.429 Sum_probs=27.4
Q ss_pred CcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecC
Q 048728 56 LKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDIS 108 (536)
Q Consensus 56 l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is 108 (536)
-.+++|.|-| ||||...+|..++.. ..| +|.++|.++.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~~p---~~G------------~i~~~g~~~~ 72 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFLKA---DEG------------RVYFENKDIT 72 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC---SEE------------EEEETTEECT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC---CCc------------EEEECCEECC
Confidence 3589999988 699988888666532 112 5788898774
No 183
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=20.60 E-value=1.5e+02 Score=31.74 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=25.8
Q ss_pred CcEEEEcCC--CchhHHHHHHHHHHHhCCCCEEE
Q 048728 56 LKVIHVAGT--KGKGSTCTFTESILRNCGFRTGL 87 (536)
Q Consensus 56 l~vI~VTGT--nGKTST~~ml~~IL~~~G~k~g~ 87 (536)
..+|.++|. .||||++..|+.-|...|.++.+
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ 405 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTL 405 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEE
Confidence 357888875 57999999999999988876543
No 184
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=20.52 E-value=44 Score=32.12 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=27.6
Q ss_pred CCcEEEEcCCC--chhHHHHHHHHHHHhCCCCEEEEeCCccccccceeeeCCeecCH
Q 048728 55 QLKVIHVAGTK--GKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGDDISE 109 (536)
Q Consensus 55 ~l~vI~VTGTn--GKTST~~ml~~IL~~~G~k~g~~tSphl~~~~Eri~inG~~is~ 109 (536)
+-.+++|.|-| ||||...+|..++.- ..| +|.++|.++..
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~p---~~G------------~I~~~g~~~~~ 73 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLIEP---TSG------------DVLYDGERKKG 73 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCC---SEE------------EEEETTEECCH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC---CCc------------EEEECCEECch
Confidence 33589999988 688888877655531 112 67889987753
No 185
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=20.40 E-value=63 Score=31.67 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=18.1
Q ss_pred cEEEEcCC--CchhHHHHHHHHHHHhC
Q 048728 57 KVIHVAGT--KGKGSTCTFTESILRNC 81 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~IL~~~ 81 (536)
..+.|+|- .||||++..+...+...
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 45566653 48999999888887654
No 186
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=20.38 E-value=54 Score=29.78 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=17.0
Q ss_pred cEEEEcCC--CchhHHHHHHHH
Q 048728 57 KVIHVAGT--KGKGSTCTFTES 76 (536)
Q Consensus 57 ~vI~VTGT--nGKTST~~ml~~ 76 (536)
.+|+|+|. .||||.+.+|+.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 48999996 489999999876
No 187
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=20.31 E-value=55 Score=28.91 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=16.1
Q ss_pred cEEEEcCCC--chhHHHHHHHH
Q 048728 57 KVIHVAGTK--GKGSTCTFTES 76 (536)
Q Consensus 57 ~vI~VTGTn--GKTST~~ml~~ 76 (536)
.+|+|.|.| ||||++.+|..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 378888876 79999999865
No 188
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=20.25 E-value=78 Score=31.98 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=21.9
Q ss_pred CCcEEEEcCCC--chhHHHHHHHHHHHhC
Q 048728 55 QLKVIHVAGTK--GKGSTCTFTESILRNC 81 (536)
Q Consensus 55 ~l~vI~VTGTn--GKTST~~ml~~IL~~~ 81 (536)
.-.+|+|+|-| ||||+...+...+...
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 34589999976 5999999999988753
No 189
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=20.08 E-value=1.4e+02 Score=27.82 Aligned_cols=19 Identities=16% Similarity=0.263 Sum_probs=11.5
Q ss_pred CCCcEEEEEecCCCCChhh
Q 048728 382 KNSAQILLFNCMSVRDPQL 400 (536)
Q Consensus 382 ~~~~~ilvfg~~~drd~~~ 400 (536)
+..+.+++|.++-.++..+
T Consensus 215 ~~~~~~l~~SAT~~~~v~~ 233 (249)
T 3ber_A 215 PRDRKTFLFSATMTKKVQK 233 (249)
T ss_dssp CSSSEEEEEESSCCHHHHH
T ss_pred CCCCeEEEEeccCCHHHHH
Confidence 3456677888776554333
Done!