BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048729
(330 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 147 bits (372), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 74/153 (48%), Positives = 102/153 (66%), Gaps = 6/153 (3%)
Query: 172 GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGE 231
GEVV++ + Y+ EATR DNGWF TGDIG + +GY+ IKDR KD+IISGGE
Sbjct: 363 GEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGE 421
Query: 232 NICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR 291
N+ AE+ESV+ + V+E AV+ PD WGEI A V ++ + +E++I+EYC
Sbjct: 422 NVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQN-----EVSEQQIVEYCG 476
Query: 292 ARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
RL RY +P+KV+F+E +P+ TGKI K +LRE
Sbjct: 477 TRLARYKLPKKVIFAEAIPRNPTGKILKTVLRE 509
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 42 TWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDA 101
T+++ + + A L+++GI +G V+++ PN L +G GA+ INTRL A
Sbjct: 45 TYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAA 104
Query: 102 HTLSVLLQHSESKLVF 117
+S +L S SK+V
Sbjct: 105 PEVSFILSDSGSKVVI 120
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 141 bits (356), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 88/203 (43%), Positives = 125/203 (61%), Gaps = 9/203 (4%)
Query: 127 LEALSLFPQRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYF 186
LE+LS ++ LKA+ G+ + L + V + E G V +DG +LGEV L+G +T GY+
Sbjct: 342 LESLSE-EEKLTLKAKTGL-PIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYY 398
Query: 187 KDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSIT 246
++EATR ++ +G+F TGDI V +GYVEIKDR KD+I SGGE I S ++E+ L
Sbjct: 399 GNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHP 458
Query: 247 AVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEY-CRARLPRYMVPRKVVF 305
V EAAVVA P W E P A V + +KPT +E+ E+ +A ++ +P VF
Sbjct: 459 KVKEAAVVAIPHPKWQERPLAVVVPR-----GEKPTPEELNEHLLKAGFAKWQLPDAYVF 513
Query: 306 SEELPKTSTGKIQKYLLREFAKS 328
+EE+P+TS GK K LRE K+
Sbjct: 514 AEEIPRTSAGKFLKRALREQYKN 536
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 4/118 (3%)
Query: 6 LPNSANSTPLTTLGFLERAAAAY--TDCPSLVYNNTTY--TWSETHRRCLQVASSLSSVG 61
P++ L FLERAAA + + S ++ + T++E ++R ++ L ++G
Sbjct: 9 FPSTMMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALG 68
Query: 62 IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVD 119
+ G V+ + N E F VP GA+L+ N RL ++ +L H+E K++ D
Sbjct: 69 VGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFD 126
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 112/196 (57%), Gaps = 11/196 (5%)
Query: 134 PQRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVS-LGEVVLRGGCVTVGYFKDKEAT 192
P R QGV + E+ V++ E G + GV GE+V+RG + GY+K ++
Sbjct: 349 PLRLDKSTTQGVPXSDI-ELKVISLEDGREL---GVGESGEIVIRGPNIFKGYWKREKEN 404
Query: 193 RRC--ISDNG--WFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAV 248
+ C + G +F TGD+G + +G++ +DR K+VI G I E+E++L AV
Sbjct: 405 QECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLXKHEAV 464
Query: 249 NEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEE 308
+ AV+ +PD GE+P AF+ LK E K E++IIE+ R R+ Y R+V F EE
Sbjct: 465 XDVAVIGKPDEEAGEVPKAFIVLKP--EYRGKVDEEDIIEWVRERISGYKRVREVEFVEE 522
Query: 309 LPKTSTGKIQKYLLRE 324
LP+T++GK+ + LLRE
Sbjct: 523 LPRTASGKLLRRLLRE 538
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 100/175 (57%), Gaps = 6/175 (3%)
Query: 155 VVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADG 214
V +PETG+ + R +G + ++G V GY++ E T+ D+G+F TGD+G + G
Sbjct: 333 VTDPETGKELPRG--DIGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGDLGKIDERG 390
Query: 215 YVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRD 274
YV I R KD++I+GG N+ E+ES + + V E+AV+ P +GE A V +
Sbjct: 391 YVHILGRGKDLVITGGFNVYPKEIESEIDAXPGVVESAVIGVPHADFGEGVTAVVVRDKG 450
Query: 275 LELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKSV 329
+ E +++ +L ++ P+KV+F ++LP+ + GK+QK +LRE K +
Sbjct: 451 ATI----DEAQVLHGLDGQLAKFKXPKKVIFVDDLPRNTXGKVQKNVLRETYKDI 501
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 95/170 (55%), Gaps = 6/170 (3%)
Query: 155 VVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADG 214
V +PETG + R + + EV G V GY++ E T D+G+F TGD+G + G
Sbjct: 333 VTDPETGXELPRGDIGMIEVX--GPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERG 390
Query: 215 YVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRD 274
YV I R D++I+GG N+ E+ES + ++ V E+AV+ P +GE AFV L R+
Sbjct: 391 YVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAFVVLXRE 450
Query: 275 LELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
P+E +++ +L + +P V+F ++LP+ + G +Q +LRE
Sbjct: 451 F----APSEAQVLHGLDGQLAXFXMPXXVIFVDDLPRNTMGAVQXNVLRE 496
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 96/173 (55%), Gaps = 9/173 (5%)
Query: 155 VVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADG 214
V +PETG + R + + EV G V GY++ E T D+G+F TGD+G + G
Sbjct: 333 VTDPETGXELPRGDIGMIEVX--GPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERG 390
Query: 215 YVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRD 274
YV I R D++I+GG N+ E+ES + ++ V E+AV+ P +GE AFV L R+
Sbjct: 391 YVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAFVVLXRE 450
Query: 275 LELTKKPTE---KEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
P+E +E+ + RL + +P V+F ++LP+ + G +Q +LRE
Sbjct: 451 F----APSEILAEELXAFVXDRLAXFXMPXXVIFVDDLPRNTMGAVQXNVLRE 499
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 89/154 (57%), Gaps = 6/154 (3%)
Query: 172 GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGE 231
G ++ RG GY+K +E +++G++ TGDI + DGY+ ++ R+KD I GGE
Sbjct: 379 GHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGE 438
Query: 232 NICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR 291
+ + EVE+ L + AV++AA+V+ PD F GE C F+ + RD + P E+ + R
Sbjct: 439 KVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFI-IPRD----EAPKAAELKAFLR 493
Query: 292 AR-LPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
R L Y +P +V F E P+T GK+ K LRE
Sbjct: 494 ERGLAAYKIPDRVEFVESFPQTGVGKVSKKALRE 527
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 15/125 (12%)
Query: 17 TLGFLERA-AAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNV 75
T G L R AA Y D ++ NT +++ E R ++A+ +GIQ+ V V PN+
Sbjct: 26 TFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNI 85
Query: 76 PSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHL---HTYLLLEALSL 132
+E+ F + RL A + L H S++ + Y++ +A S
Sbjct: 86 KEFFEVIFAL-----------FRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSG 134
Query: 133 FPQRA 137
F R+
Sbjct: 135 FDYRS 139
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 88/154 (57%), Gaps = 6/154 (3%)
Query: 172 GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGE 231
G ++ RG GY+K +E +++G++ TGDI + DGY+ ++ R+KD I GGE
Sbjct: 379 GHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGE 438
Query: 232 NICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR 291
+ + EVE+ L + AV++AA V+ PD F GE C F+ + RD + P E+ + R
Sbjct: 439 KVAAEEVENHLLAHPAVHDAAXVSXPDQFLGERSCVFI-IPRD----EAPKAAELKAFLR 493
Query: 292 AR-LPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
R L Y +P +V F E P+T GK+ K LRE
Sbjct: 494 ERGLAAYKIPDRVEFVESFPQTGVGKVSKKALRE 527
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 15/125 (12%)
Query: 17 TLGFLERA-AAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNV 75
T G L R AA Y D ++ NT +++ E R ++A+ +GIQ+ V V PN+
Sbjct: 26 TFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNI 85
Query: 76 PSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHL---HTYLLLEALSL 132
+E+ F + RL A + L H S++ + Y++ +A S
Sbjct: 86 KEFFEVIFAL-----------FRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSG 134
Query: 133 FPQRA 137
F R+
Sbjct: 135 FDYRS 139
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 84/148 (56%), Gaps = 8/148 (5%)
Query: 172 GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGE 231
GE++++G V GY + T +NG+F TGDI + +GYV I DR KD+IISGGE
Sbjct: 349 GELMIKGANVMNGYLYPTDLTGTF--ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGE 406
Query: 232 NICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR 291
NI ++E+V +++A V PD WG++P + + D+ ++ ++I Y
Sbjct: 407 NIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDI------SKAQLIAYLS 460
Query: 292 ARLPRYMVPRKVVFSEELPKTSTGKIQK 319
L +Y VP+ + LP TSTGK+Q+
Sbjct: 461 KHLAKYKVPKHFEKVDTLPYTSTGKLQR 488
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 92/170 (54%), Gaps = 6/170 (3%)
Query: 155 VVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADG 214
V +PETG + R + + EV G V GY++ E T D+G+F TGD+G + G
Sbjct: 333 VTDPETGXELPRGDIGMIEVX--GPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERG 390
Query: 215 YVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRD 274
YV I R D++I+GG N+ E+ES + ++ V E+AV+ P +GE A V RD
Sbjct: 391 YVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAVV--VRD 448
Query: 275 LELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
T E +++ +L + +P V+F ++LP+ + G +Q +LRE
Sbjct: 449 XGATID--EAQVLHGLDGQLAXFXMPXXVIFVDDLPRNTMGAVQXNVLRE 496
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 101/174 (58%), Gaps = 6/174 (3%)
Query: 151 AEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVM 210
AE+ +V+PETG S+ R+ GE+ +RG + GY D EAT R I GW +TGDIG +
Sbjct: 364 AEMKIVDPETGASLPRN--QPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYI 421
Query: 211 HADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVS 270
D + I DR K++I G + AE+E++L + +++AAVV D GE+P AFV
Sbjct: 422 DDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFV- 480
Query: 271 LKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
+K + + TE EI +Y ++ Y ++V F E +PK +GKI + L+E
Sbjct: 481 VKSE---KSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKE 531
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%)
Query: 37 NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNIN 96
N YT+++ +VAS L+ +GIQ+G V+ + P+ P G GAI+ N
Sbjct: 46 NGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAAN 105
Query: 97 TRLDAHTLSVLLQHSESKLVF 117
L+ + S +KL+
Sbjct: 106 PFSTPAELAKHAKASRAKLLI 126
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 96/181 (53%), Gaps = 9/181 (4%)
Query: 146 KTVGLAEVDVVNPETGESVKRDGVSL-GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYT 204
K V E VV+ +TG+++ GV+ GE+ +RG + GY + EAT I +GW ++
Sbjct: 364 KVVPFFEAKVVDLDTGKTL---GVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHS 420
Query: 205 GDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEI 264
GDI D + I DR K +I G + AE+ES+L + +A V PD GE+
Sbjct: 421 GDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGEL 480
Query: 265 PCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPR-KVVFSEELPKTSTGKIQKYLLR 323
P A V LE K TEKEI++Y +++ R VVF +E+PK TGK+ +R
Sbjct: 481 PAAVVV----LEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIR 536
Query: 324 E 324
E
Sbjct: 537 E 537
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 96/181 (53%), Gaps = 9/181 (4%)
Query: 146 KTVGLAEVDVVNPETGESVKRDGVSL-GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYT 204
K V E VV+ +TG+++ GV+ GE+ +RG + GY + EAT I +GW ++
Sbjct: 364 KVVPFFEAKVVDLDTGKTL---GVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHS 420
Query: 205 GDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEI 264
GDI D + I DR K +I G + AE+ES+L + +A V PD GE+
Sbjct: 421 GDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGEL 480
Query: 265 PCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPR-KVVFSEELPKTSTGKIQKYLLR 323
P A V LE K TEKEI++Y +++ R VVF +E+PK TGK+ +R
Sbjct: 481 PAAVVV----LEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIR 536
Query: 324 E 324
E
Sbjct: 537 E 537
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 96/181 (53%), Gaps = 9/181 (4%)
Query: 146 KTVGLAEVDVVNPETGESVKRDGVSL-GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYT 204
K V E VV+ +TG+++ GV+ GE+ +RG + GY + EAT I +GW ++
Sbjct: 369 KVVPFFEAKVVDLDTGKTL---GVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHS 425
Query: 205 GDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEI 264
GDI D + I DR K +I G + AE+ES+L + +A V PD GE+
Sbjct: 426 GDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGEL 485
Query: 265 PCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPR-KVVFSEELPKTSTGKIQKYLLR 323
P A V LE K TEKEI++Y +++ R VVF +E+PK TGK+ +R
Sbjct: 486 PAAVVV----LEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIR 541
Query: 324 E 324
E
Sbjct: 542 E 542
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 96/181 (53%), Gaps = 9/181 (4%)
Query: 146 KTVGLAEVDVVNPETGESVKRDGVSL-GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYT 204
K V E VV+ +TG+++ GV+ GE+ +RG + GY + EAT I +GW ++
Sbjct: 369 KVVPFFEAKVVDLDTGKTL---GVNQRGELSVRGPMIMSGYVNNPEATNALIDKDGWLHS 425
Query: 205 GDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEI 264
GDI D + I DR K +I G + AE+ES+L + +A V PD GE+
Sbjct: 426 GDIAYWDEDEHFFIVDRLKSLIKYKGCQVAPAELESILLQHPNIFDAGVAGLPDDDAGEL 485
Query: 265 PCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPR-KVVFSEELPKTSTGKIQKYLLR 323
P A V LE K TEKEI++Y +++ R VVF +E+PK TGK+ +R
Sbjct: 486 PAAVVV----LEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIR 541
Query: 324 E 324
E
Sbjct: 542 E 542
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 82/155 (52%), Gaps = 7/155 (4%)
Query: 171 LGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRS--KDVIIS 228
+GE+VLRG V GY+ + AT+ NGW +TGD+G ADGY+ R+ K++I +
Sbjct: 347 VGEIVLRGPTVFKGYWNNAAATQHAFR-NGWHHTGDMGRFDADGYLFYAGRAPEKELIKT 405
Query: 229 GGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIE 288
GGEN+ AEVE L A+ +A V+ PD W E A K + + E
Sbjct: 406 GGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAA----DALAE 461
Query: 289 YCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLR 323
+ + + RY P+ VVF E LPK + G I + ++
Sbjct: 462 FVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVK 496
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 7/183 (3%)
Query: 146 KTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTG 205
K V L + V++ +T +S+ + GEV ++G + GY + EAT+ I + GW +TG
Sbjct: 366 KVVPLFKAKVIDLDTKKSLGPN--RRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTG 423
Query: 206 DIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIP 265
DIG + + I DR K +I G + AE+ESVL ++ +A V PD GE+P
Sbjct: 424 DIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELP 483
Query: 266 CAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPR-KVVFSEELPKTSTGKIQKYLLRE 324
A V LE K TEKE+++Y +++ R V F +E+PK TGKI +RE
Sbjct: 484 GAVVV----LESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIRE 539
Query: 325 FAK 327
K
Sbjct: 540 ILK 542
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 7/183 (3%)
Query: 146 KTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTG 205
K V L + V++ +T +S+ + GEV ++G + GY + EAT+ I + GW +TG
Sbjct: 366 KVVPLFKAKVIDLDTKKSLGPN--RRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTG 423
Query: 206 DIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIP 265
DIG + + I DR K +I G + AE+ESVL ++ +A V PD GE+P
Sbjct: 424 DIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELP 483
Query: 266 CAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPR-KVVFSEELPKTSTGKIQKYLLRE 324
A V LE K TEKE+++Y +++ R V F +E+PK TGKI +RE
Sbjct: 484 GAVVV----LESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIRE 539
Query: 325 FAK 327
K
Sbjct: 540 ILK 542
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 7/183 (3%)
Query: 146 KTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTG 205
K V L + V++ +T +S+ + GEV ++G + GY + EAT+ I + GW +TG
Sbjct: 366 KVVPLFKAKVIDLDTKKSLGPN--RRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTG 423
Query: 206 DIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIP 265
DIG + + I DR K +I G + AE+ESVL ++ +A V PD GE+P
Sbjct: 424 DIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELP 483
Query: 266 CAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPR-KVVFSEELPKTSTGKIQKYLLRE 324
A V LE K TEKE+++Y +++ R V F +E+PK TGKI +RE
Sbjct: 484 GAVVV----LESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIRE 539
Query: 325 FAK 327
K
Sbjct: 540 ILK 542
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 99/173 (57%), Gaps = 6/173 (3%)
Query: 151 AEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVM 210
AE+ +V+P+TG+S+ R+ GE+ +RG + GY + AT I +GW +TGDIG++
Sbjct: 411 AEMKIVDPDTGDSLSRN--QPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLI 468
Query: 211 HADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVS 270
D + I DR K++I G + AE+E++L + + AVVA + GE+P AFV
Sbjct: 469 DDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVV 528
Query: 271 LKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLR 323
+D EL +E ++ ++ ++ Y KV F+E +PK +GKI + LR
Sbjct: 529 KSKDSEL----SEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLR 577
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
Query: 6 LPNSANSTPLTTLGFLERAAAAYTDCPSLVYNNT--TYTWSETHRRCLQVASSLSSVGIQ 63
LP+ L+ ++ + + + P L+ T YT+S+ H Q+A++ +G+
Sbjct: 52 LPDIYIPNHLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVN 111
Query: 64 RGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVD 119
+ VV ++ PN P GA N ++ + S +KL+ +
Sbjct: 112 QNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITE 167
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 94/181 (51%), Gaps = 9/181 (4%)
Query: 146 KTVGLAEVDVVNPETGESVKRDGVSL-GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYT 204
K V +V+ +TG+++ GV+ GE+ ++G + GY + EAT I +GW ++
Sbjct: 399 KVVPFFSAKIVDLDTGKTL---GVNQRGELCVKGPMIMKGYVNNPEATSALIDKDGWLHS 455
Query: 205 GDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEI 264
GDI DGY I DR K +I G + AE+ES+L + +A V PD GE+
Sbjct: 456 GDIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAELESILLQHPFIFDAGVAGIPDPDAGEL 515
Query: 265 PCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPR-KVVFSEELPKTSTGKIQKYLLR 323
P A V LE K TE+E+++Y ++ R V F +E+PK TGKI +R
Sbjct: 516 PAAVVV----LEEGKTMTEQEVMDYVAGQVTASKRLRGGVKFVDEVPKGLTGKIDARKIR 571
Query: 324 E 324
E
Sbjct: 572 E 572
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 76/143 (53%), Gaps = 4/143 (2%)
Query: 184 GYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLY 243
GY + + T I + W GD G+ DGY + R+ D+I S G I +EVE+ L
Sbjct: 418 GYVDNPDKTAANIRGDFWLL-GDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALM 476
Query: 244 SITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTE--KEIIEYCRARLPRYMVPR 301
AV E AV++ PD GE+ AFV L L+ P + KE+ ++ ++ Y PR
Sbjct: 477 EHPAVVETAVISSPDPVRGEVVKAFVVLASQF-LSHDPEQLTKELQQHVKSVTAPYKYPR 535
Query: 302 KVVFSEELPKTSTGKIQKYLLRE 324
K+ F LPKT TGKIQ+ LR+
Sbjct: 536 KIEFVLNLPKTVTGKIQRAKLRD 558
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 41 YTWSETHRRCLQVASSLS-SVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRL 99
+ + E Q A+ LS + G+QRG V+VV P VP + + G +G I ++
Sbjct: 74 WNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQM 133
Query: 100 DAHTLSVLLQHSESKLV 116
+ + LQ S++K +
Sbjct: 134 KSTDILYRLQMSKAKAI 150
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 76/143 (53%), Gaps = 4/143 (2%)
Query: 184 GYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLY 243
GY + + T I + W GD G+ DGY + R+ D+I S G I +EVE+ L
Sbjct: 418 GYVDNPDKTAANIRGDFWLL-GDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALM 476
Query: 244 SITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTE--KEIIEYCRARLPRYMVPR 301
AV E AV++ PD GE+ AFV L L+ P + KE+ ++ ++ Y PR
Sbjct: 477 EHPAVVETAVISSPDPVRGEVVKAFVVLASQF-LSHDPEQLTKELQQHVKSVTAPYKYPR 535
Query: 302 KVVFSEELPKTSTGKIQKYLLRE 324
K+ F LPKT TGKIQ+ LR+
Sbjct: 536 KIEFVLNLPKTVTGKIQRAKLRD 558
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 41 YTWSETHRRCLQVASSLS-SVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRL 99
+ + E Q A+ LS + G+QRG V+VV P VP + + G +G I ++
Sbjct: 74 WNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQM 133
Query: 100 DAHTLSVLLQHSESKLV 116
+ + LQ S++K +
Sbjct: 134 KSTDILYRLQMSKAKAI 150
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 98/205 (47%), Gaps = 6/205 (2%)
Query: 121 LHTYLLLEALSLFPQRARLKARQGVKTVGLAEVDV-VNPETGESVKR-DGVSLGEVVLRG 178
+ Y + E L RA + R G V L V++ + E G + DG S+GE+ +RG
Sbjct: 301 IERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRG 360
Query: 179 GCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDR-SKDVIISGGENICSAE 237
+ Y +AT +++G+F TGD+ V DGYV I R + D+I SGG I + E
Sbjct: 361 PNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGE 420
Query: 238 VESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRY 297
+E+ L V EAAV PD GE A++ T + ++ ARL +
Sbjct: 421 IENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGT---LADHVAARLAPH 477
Query: 298 MVPRKVVFSEELPKTSTGKIQKYLL 322
PR V + + +P+ GKI K L
Sbjct: 478 KRPRVVRYLDAVPRNDMGKIMKRAL 502
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 7/159 (4%)
Query: 171 LGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGG 230
+G ++ RG GY+K + NG++ +GD+ + +GY+ ++ R KD I GG
Sbjct: 382 VGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGG 441
Query: 231 ENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYC 290
E I + E+E++L AV AA+V+ D GE CA++ +K L ++ +
Sbjct: 442 EKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAV------QVRRFL 495
Query: 291 RAR-LPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS 328
R + + + +P +V + LP T+ GK+ K LR++ S
Sbjct: 496 REQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLAS 534
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 171 LGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGG 230
+G + RG GY++ E + ++ ++Y+GD+ DG + + R KD I GG
Sbjct: 387 IGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGG 446
Query: 231 ENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYC 290
E I S E+E ++ V AA+VA D +GE CAF+ + R+ EL + ++E
Sbjct: 447 EKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFI-VSRNPELKAVVLRRHLMELG 505
Query: 291 RARLPRYMVPRKVVFSEELPKTSTGKIQKYLLR 323
A +Y +P ++ E LP T+ GK+ K LR
Sbjct: 506 IA---QYKLPDQIKLIESLPLTAVGKVDKKQLR 535
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Query: 183 VGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVL 242
VGY EAT + D GW+ T D+ V +G V I R D+IISGGENI +E+E VL
Sbjct: 363 VGYLNQPEATAEKLQD-GWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVL 421
Query: 243 YSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR-ARLPRYMVPR 301
+ V E V+ D WG+ A V + L + + + +CR + L + P+
Sbjct: 422 GTAPGVTEVVVIGLADQRWGQSVTACVVPR----LGETLSADALDTFCRSSELADFKRPK 477
Query: 302 KVVFSEELPKTSTGKIQKYLLREFAKSVS 330
+ ++LPK + + K L R+ + VS
Sbjct: 478 RYFILDQLPKNA---LNKVLRRQLVQQVS 503
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 20 FLERAAAAYTDCPSLVY--NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPS 77
L RAA D +L T +E R VA+ L + G++ V+VVAPN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 78 MYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSE 112
+ + GA+ +N RL + L+ L++ E
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGE 101
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Query: 183 VGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVL 242
VGY +AT + D GW+ T D+ V +G V I R D+IISGGENI +E+E VL
Sbjct: 363 VGYLNQPQATAEKLQD-GWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVL 421
Query: 243 YSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR-ARLPRYMVPR 301
+ V E V+ D WG+ A V + L + + + +CR + L + P+
Sbjct: 422 GTAPGVTEVVVIGLADQRWGQSVTACVVPR----LGETLSADALDTFCRSSELADFKRPK 477
Query: 302 KVVFSEELPKTSTGKIQKYLLREFAKSVS 330
+ ++LPK + + K L R+ + VS
Sbjct: 478 RYFILDQLPKNA---LNKVLRRQLVQQVS 503
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 20 FLERAAAAYTDCPSLVY--NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPS 77
L RAA D +L T +E R VA+ L + G++ V+VVAPN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 78 MYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSE 112
+ + GA+ +N RL + L+ L++ E
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGE 101
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Query: 183 VGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVL 242
VGY +AT + D GW+ T D+ V +G V I R D+IISGGENI +E+E VL
Sbjct: 363 VGYLNQPQATAEKLQD-GWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVL 421
Query: 243 YSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR-ARLPRYMVPR 301
+ V E V+ D WG+ A V + L + + + +CR + L + P+
Sbjct: 422 GTAPGVTEVVVIGLADQRWGQSVTACVVPR----LGETLSADALDTFCRSSELADFKRPK 477
Query: 302 KVVFSEELPKTSTGKIQKYLLREFAKSVS 330
+ ++LPK + + K L R+ + VS
Sbjct: 478 RYFILDQLPKNA---LNKVLRRQLVQQVS 503
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 20 FLERAAAAYTDCPSLVY--NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPS 77
L RAA D +L T +E R VA+ L + G++ V+VVAPN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 78 MYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSE 112
+ + GA+ +N RL + L+ L++ E
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGE 101
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Query: 183 VGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVL 242
VGY +AT + D GW+ T D+ V +G V I R D+IISGGENI +E+E VL
Sbjct: 363 VGYLNQPQATAEKLQD-GWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVL 421
Query: 243 YSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR-ARLPRYMVPR 301
+ V E V+ D WG+ A V + L + + + +CR + L + P+
Sbjct: 422 GTAPGVTEVVVIGLADQRWGQSVTACVVPR----LGETLSADALDTFCRSSELADFKRPK 477
Query: 302 KVVFSEELPKTSTGKIQKYLLREFAKSVS 330
+ ++LPK + K+ L R+ + VS
Sbjct: 478 RYFILDQLPKNALNKV---LRRQLVQQVS 503
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 20 FLERAAAAYTDCPSLVY--NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPS 77
L RAA D +L T +E R VA+ L + G++ V+VVAPN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 78 MYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSE 112
+ + GA+ +N RL + L+ L++ E
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGE 101
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Query: 183 VGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVL 242
VGY +AT + D GW+ T D+ V +G V I R D+IISGGENI +E+E VL
Sbjct: 363 VGYLNQPQATAEKLQD-GWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERVL 421
Query: 243 YSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR-ARLPRYMVPR 301
+ V E V+ D WG+ A V + L + + + +CR + L + P+
Sbjct: 422 GTAPGVTEVVVIGLADQRWGQSVTACVVPR----LGETLSADALDTFCRSSELADFKRPK 477
Query: 302 KVVFSEELPKTSTGKIQKYLLREFAKSVS 330
+ ++LPK + K+ L R+ + VS
Sbjct: 478 RYFILDQLPKNALNKV---LRRQLVQQVS 503
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 20 FLERAAAAYTDCPSLVY--NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPS 77
L RAA D +L T +E R VA+ L + G++ V+VVAPN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 78 MYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSE 112
+ + GA+ +N RL + L+ L++ E
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGE 101
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 89/170 (52%), Gaps = 13/170 (7%)
Query: 159 ETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEI 218
E G +V DG +G++ ++G V Y+ ++E +R W +GD +G
Sbjct: 368 EAGHAVP-DG-EVGDLYIKGPSAAVMYWNNREKSRATFLGE-WIRSGDKYCRLPNGCYVY 424
Query: 219 KDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPC-AFVSLKRDLEL 277
RS D++ G+ + EVE VL AV EAAVV G + AFV LKR+
Sbjct: 425 AGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGVDH--GGLVKTRAFVVLKREF-- 480
Query: 278 TKKPTE---KEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
P+E +E+ + + RL + PR +VF ++LPKT+TGKIQ++ LRE
Sbjct: 481 --APSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 74/149 (49%), Gaps = 9/149 (6%)
Query: 183 VGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVL 242
VGY +AT + D GW+ T D+ V +G V I R D IISGGENI +E+E VL
Sbjct: 363 VGYLNQPQATAEKLQD-GWYRTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVL 421
Query: 243 YSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR-ARLPRYMVPR 301
+ V E V+ D WG+ A V + L + + + +CR + L + P+
Sbjct: 422 GTAPGVTEVVVIGLADQRWGQSVTACVVPR----LGETLSADALDTFCRSSELADFKRPK 477
Query: 302 KVVFSEELPKTSTGKIQKYLLREFAKSVS 330
+ ++LPK + + K L R+ + VS
Sbjct: 478 RYFILDQLPKNA---LNKVLRRQLVQQVS 503
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 21 LERAAAAYTDCPSLVY--NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM 78
L RAA D +L T +E R VA+ L + G++ V+VVAPN +
Sbjct: 8 LRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADV 67
Query: 79 YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSE 112
+ GA+ +N RL + L+ L++ E
Sbjct: 68 VIAILALHRLGAVPALLNPRLKSAELAELIKRGE 101
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 76/146 (52%), Gaps = 2/146 (1%)
Query: 183 VGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVL 242
V Y KD E T D G+++TGD+ M DGY+ R+ D+I + G + EVES L
Sbjct: 436 VHYGKDPERTEETWHD-GYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESAL 494
Query: 243 YSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRK 302
AV E A+ PD G++ A + L +D + + E+ ++ + Y PR
Sbjct: 495 IQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDS-LKNELQDHVKNVTAPYKYPRI 553
Query: 303 VVFSEELPKTSTGKIQKYLLREFAKS 328
+ F ELPKT +GKI++ +R+ +S
Sbjct: 554 IEFVPELPKTISGKIRRVEIRDKDQS 579
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 155 VVNPETGESVKR---DGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMH 211
V++P TGE + +GV + T+ D+ G+++TGD
Sbjct: 455 VLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKD 514
Query: 212 ADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSL 271
DGY+ I R DV+ G + +AE+E+ + V E AVV D G+ AFV L
Sbjct: 515 KDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVL 574
Query: 272 KR--------DLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLR 323
K D EL + +K ++ R + + P+ ++ ++LPKT +GKI + +LR
Sbjct: 575 KNKSSWSTATDDEL--QDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILR 632
Query: 324 E 324
+
Sbjct: 633 K 633
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 42 TWSETHRRCLQVASSLS-SVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLD 100
T+ E QVA L+ S+G+++G V+V P VP + GAI + +
Sbjct: 115 TYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFS 174
Query: 101 AHTLSVLLQHSESKLV 116
+++L + +SK+V
Sbjct: 175 SNSLRDRINDGDSKVV 190
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 202 FYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFW 261
+++GD DGY I R DV+ G + +AE+ES L + + EAAVV P
Sbjct: 496 YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIK 555
Query: 262 GEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYL 321
G+ A+V+L E + + E+ + R + P + +++ LPKT +GKI + +
Sbjct: 556 GQAIYAYVTLNHGEEPSPE-LYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRI 614
Query: 322 LREFA 326
LR+ A
Sbjct: 615 LRKIA 619
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 42 TWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDA 101
++ E HR + A++L +GI++G VV++ P VP GA+ + I
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 102 HTLSVLLQHSESKLVF 117
++ + S S+LV
Sbjct: 169 EAVAGRIIDSSSRLVI 184
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 202 FYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFW 261
+++GD DGY I R DV+ G + +AE+ES L + + EAAVV P
Sbjct: 496 YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIK 555
Query: 262 GEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYL 321
G+ A+V+L E + + E+ + R + P + +++ LPKT +GKI + +
Sbjct: 556 GQAIYAYVTLNHGEEPSPE-LYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRI 614
Query: 322 LREFA 326
LR+ A
Sbjct: 615 LRKIA 619
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 42 TWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDA 101
++ E HR + A++L +GI++G VV++ P VP GA+ + I
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 102 HTLSVLLQHSESKLVF 117
++ + S S+LV
Sbjct: 169 EAVAGRIIDSSSRLVI 184
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 202 FYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFW 261
+++GD DGY I R DV+ G + +AE+ES L + + EAAVV P
Sbjct: 496 YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIK 555
Query: 262 GEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYL 321
G+ A+V+L E + + E+ + R + P + +++ LPKT +GKI + +
Sbjct: 556 GQAIYAYVTLNHGEEPSPE-LYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRI 614
Query: 322 LREFA 326
LR+ A
Sbjct: 615 LRKIA 619
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 42 TWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDA 101
++ E HR + A++L +GI++G VV++ P VP GA+ + I
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 102 HTLSVLLQHSESKLVF 117
++ + S S+LV
Sbjct: 169 EAVAGRIIDSSSRLVI 184
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 202 FYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFW 261
+++GD DGY I R DV+ G + +AE+ES L + + EAAVV P
Sbjct: 496 YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIK 555
Query: 262 GEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYL 321
G+ A+V+L E + + E+ + R + P + +++ LPKT +GKI + +
Sbjct: 556 GQAIYAYVTLNHGEEPSPE-LYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRI 614
Query: 322 LREFA 326
LR+ A
Sbjct: 615 LRKIA 619
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 42 TWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDA 101
++ E HR + A++L +GI++G VV++ P VP GA+ + I
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 102 HTLSVLLQHSESKLVF 117
++ + S S+LV
Sbjct: 169 EAVAGCIIDSSSRLVI 184
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 202 FYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFW 261
+++GD DGY I R DV+ G + +AE+ES L + + EAAVV P
Sbjct: 496 YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIK 555
Query: 262 GEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYL 321
G+ A+V+L E + + E+ + R + P + +++ LPKT +G I + +
Sbjct: 556 GQAIYAYVTLNHGEEPSPE-LYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGAIMRRI 614
Query: 322 LREFA 326
LR+ A
Sbjct: 615 LRKIA 619
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 42 TWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDA 101
++ E HR + A++L +GI++G VV++ P VP GA+ + I
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 102 HTLSVLLQHSESKLVF 117
++ + S S+LV
Sbjct: 169 EAVAGRIIDSSSRLVI 184
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 202 FYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFW 261
+++GD DGY I R DV+ G + +AE+ES L + + EAAVV P
Sbjct: 496 YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIK 555
Query: 262 GEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYL 321
G+ A+V+L E + + E+ + + P + +++ LPKT +GKI + +
Sbjct: 556 GQAIYAYVTLNHGEEPSPE-LYAEVRNWVEKEIGPLATPDVLHWTDSLPKTRSGKIMRRI 614
Query: 322 LREFA 326
LR+ A
Sbjct: 615 LRKIA 619
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 42 TWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDA 101
++ E HR + A++L +GI++G VV++ P VP GA+ + I
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 102 HTLSVLLQHSESKLVF 117
++ + S S+LV
Sbjct: 169 EAVAGRIIDSSSRLVI 184
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 11/161 (6%)
Query: 170 SLGEVVLRGGCVTVGYFKDKEAT-RRCISD-------NGWFYTGDIGVMHADGYVEIKDR 221
+LGE+ + G + GY T R ++D + TGD+ ADG +E R
Sbjct: 408 ALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGR 467
Query: 222 SKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKP 281
+ D + G + EVE+ L AV +AAV+A+ + A+V +R P
Sbjct: 468 ADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAER---ADAPP 524
Query: 282 TEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLL 322
E+ + LP YMVP + V +ELP+T GK+ + L
Sbjct: 525 DAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRAL 565
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 202 FYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFW 261
+++GD DGY I R DV+ G + +AE+ES L + + EAAVV P
Sbjct: 496 YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIK 555
Query: 262 GEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYL 321
G+ A+V+L E + + E+ + + P + +++ LPKT +GKI + +
Sbjct: 556 GQAIYAYVTLNHGEEPSPE-LYAEVRNWVAKEIGPLATPDVLHWTDSLPKTRSGKIMRRI 614
Query: 322 LREFA 326
LR+ A
Sbjct: 615 LRKIA 619
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 42 TWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDA 101
++ E HR + A++L +GI++G VV++ P VP GA+ + I
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 102 HTLSVLLQHSESKLVF 117
++ + S S+LV
Sbjct: 169 EAVAGRIIDSSSRLVI 184
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 170 SLGEVVLRGGCVTVGYFKDKEATRRCISDNGW------FYTGDIGVMHADGYVEIKDRSK 223
++GE+ + G V+ GY + T+ +N + + TGD+ DG +E R
Sbjct: 802 AVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRID 861
Query: 224 DVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTE 283
D + G I E+E L V +A VVA A++ + L +
Sbjct: 862 DQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQL------SA 915
Query: 284 KEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLL 322
+++ + + +LP YMVP+ F +ELP T+ GK+ K LL
Sbjct: 916 EDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLL 954
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 1/105 (0%)
Query: 7 PNSANSTPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGH 66
P A+ T T F E A A D P+L Y+ T ++ E ++A L G +G
Sbjct: 457 PAQAHETKPLTYWFKE-AVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGS 515
Query: 67 VVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHS 111
VV++ + GV +GA ++ +L +S +L S
Sbjct: 516 VVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADS 560
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 172 GEVVLRGGCVTVGYFKDKEATRRCISDNGW------FYTGDIGVMHADGYVEIKDRSKDV 225
GE+ + G + GY+K E T + DN + + TGD +DG +E R +
Sbjct: 373 GELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQ 432
Query: 226 IISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKE 285
+ G + EVES+L ++E AV D CA+ ++ + L ++
Sbjct: 433 VKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPL------EQ 486
Query: 286 IIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
+ ++ LP YM+P + +++P TS GKI + L E
Sbjct: 487 LRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPE 525
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 15/162 (9%)
Query: 172 GEVVLRGGCVTVGYFKDKEATRRC---ISDNGWFYTGDIGVMHADGYVEIKDRSKDVIIS 228
GE+V+ G V+VGY E T + I + TGD G + +G + R I
Sbjct: 346 GEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVE-NGLLFYNGRLDFQIKL 404
Query: 229 GGENICSAEVESVLYSITAVNEAAVVA-----RPDMFWGEIPCAFVSLKRDLELTKKPTE 283
G + E+E L + + V A +V + D + S +++ +LT +
Sbjct: 405 HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSA-IK 463
Query: 284 KEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKI-QKYLLRE 324
KE+ E RLP YM+PRK ++ +P T GK+ +K LL E
Sbjct: 464 KELNE----RLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSE 501
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 15/162 (9%)
Query: 172 GEVVLRGGCVTVGYFKDKEATRRC---ISDNGWFYTGDIGVMHADGYVEIKDRSKDVIIS 228
GE+V+ G V+VGY E T + I + TGD G + +G + R I
Sbjct: 346 GEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVE-NGLLFYNGRLDFQIKL 404
Query: 229 GGENICSAEVESVLYSITAVNEAAVVA-----RPDMFWGEIPCAFVSLKRDLELTKKPTE 283
G + E+E L + + V A +V + D + S +++ +LT +
Sbjct: 405 HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSA-IK 463
Query: 284 KEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKI-QKYLLRE 324
KE+ E RLP YM+PRK ++ +P T GK+ +K LL E
Sbjct: 464 KELNE----RLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSE 501
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 11/184 (5%)
Query: 148 VGLAEVDV---VNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCI--SDNGWF 202
VG A+ D+ + E G+ + GE+V+ G V+ GY + E T + + W
Sbjct: 320 VGFAKPDMNIFIMDEEGQPLPEG--EKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWA 377
Query: 203 Y-TGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVA-RPDMF 260
Y TGD G + DG + + R I G + E+E + V A V+ +P+
Sbjct: 378 YRTGDAGFIQ-DGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGT 436
Query: 261 WGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKY 320
+ A V + + E + T I + A LP YM+PRK ++ + + T+ GKI +
Sbjct: 437 VEYLIAAIVPEEHEFEKEFQLTSA-IKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRK 495
Query: 321 LLRE 324
+ E
Sbjct: 496 RIGE 499
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 171 LGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGG 230
+G + + G + GYF D + ++ I+ GW TGD+G + DGY+ + R KD+II G
Sbjct: 410 VGHICISGPSLXSGYFGD-QVSQDEIAATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRG 467
Query: 231 ENICSAEVESV 241
NI ++E +
Sbjct: 468 RNIWPQDIEYI 478
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 172 GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKD 220
GEVV++ + Y+ EATR DNGWF TGDIG + +GY+ IKD
Sbjct: 349 GEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKD 396
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 42 TWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDA 101
T+++ + + A L+++GI +G V+++ PN L +G GA+ INTRL A
Sbjct: 31 TYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAA 90
Query: 102 HTLSVLLQHSESKLVF 117
+S +L S SK+V
Sbjct: 91 PEVSFILSDSGSKVVI 106
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 73/179 (40%), Gaps = 23/179 (12%)
Query: 164 VKRDGVSL-----GEVVLRGGCVTVGYFKDKEATRRCI---SDNGWFYTGDIGVMHADGY 215
+ DG L GE+++ G V+ GY + E T ++TGDIG + D
Sbjct: 336 IDEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNI 395
Query: 216 VEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWG-EIPCAFVSLK-- 272
+ R I G I +V L V A V R + + A++ +K
Sbjct: 396 LLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDG 455
Query: 273 ------RDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQ-KYLLRE 324
R+LELTK I + + YM+P K ++ + LP T GKI K L+ E
Sbjct: 456 VKERFDRELELTKA-----IKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINE 509
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 27/193 (13%)
Query: 150 LAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRC----ISDNG----W 201
+ EV +++P+T + D +GE+ ++ V GY+ E TR I D+ +
Sbjct: 380 IQEVKIIDPDT--LIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIY 437
Query: 202 FYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVE-----SVLYSITAVNEAAVVAR 256
TGD+G +H + + + R KD+II G+N ++E S L+ + A V+
Sbjct: 438 LRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLXHSPLHHVLGKCAAFVIQE 496
Query: 257 PDMFWGEIPCAFVSLKRDLELTKKPTEKEIIE--YCRARLPRY---MVPRKVVFSEELPK 311
+ + C + D ++ + EI E Y +L + ++P K P
Sbjct: 497 EHEYKLTVXCEVKNRFXD-DVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAX-----PH 550
Query: 312 TSTGKIQKYLLRE 324
T++GKI++ R+
Sbjct: 551 TTSGKIRRNFCRK 563
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 65/168 (38%), Gaps = 13/168 (7%)
Query: 148 VGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRC-ISDNGWFYTGD 206
+G + V+ P + E VK+ GE+V+ G V GY +A C I+ + TGD
Sbjct: 353 LGDSVAHVLAPGSNEHVKKGXA--GELVIEGSLVANGYLNRPDAKGFCDINGRKXYRTGD 410
Query: 207 IGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAV---VARPDM---- 259
I AD + R + + G+ + EV V+ S++ + V + P
Sbjct: 411 IVRXDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQF 470
Query: 260 ---FWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVV 304
F A R + K + + C LP Y VP ++
Sbjct: 471 LVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYXVPDFII 518
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 14/180 (7%)
Query: 144 GVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKD--KEATRRCISDNGW 201
G + VG DV ETGE + G L E LR +T F + E T + +
Sbjct: 361 GTRVVGDDGRDVAPGETGE-LWLSGAQLAEGYLRRPELTAEKFPEVTDEKTGESVR---Y 416
Query: 202 FYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFW 261
+ TGD+ DG + R+ I G I +++E+ + V +A V R +
Sbjct: 417 YRTGDLVSELPDGRFAYEGRADLQIKLRGYRIELSDIETAVRRHDDVVDAVVTVR-EFKP 475
Query: 262 GEIP--CAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQK 319
G++ CA+V+ R+ T T +E+ + + LP YM P + + LP+T GK+ +
Sbjct: 476 GDLRLVCAYVA--REGSAT---TARELRNHIKTLLPAYMHPARYLPLPGLPRTVNGKVDR 530
>pdb|2HFK|A Chain A, Pikromycin Thioesterase In Complex With Product 10-
Deoxymethynolide
pdb|2HFK|B Chain B, Pikromycin Thioesterase In Complex With Product 10-
Deoxymethynolide
Length = 319
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 94 NINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSLFPQRARLKARQGVKTVGLAEV 153
+++T LDA ++L ++ +V + H LL L+ RL+ G G+ V
Sbjct: 142 DLDTALDAQARAILRAAGDAPVVLLGHAGGALLAHELAF-----RLERAHGAPPAGIVLV 196
Query: 154 DVVNPETGESVKRDGVSLGEVVLRG 178
D P E ++ LGE + G
Sbjct: 197 DPYPPGHQEPIEVWSRQLGEGLFAG 221
>pdb|1MN6|A Chain A, Thioesterase Domain From Picromycin Polyketide Synthase,
Ph 7.6
pdb|1MN6|B Chain B, Thioesterase Domain From Picromycin Polyketide Synthase,
Ph 7.6
pdb|1MNA|A Chain A, Thioesterase Domain Of Picromycin Polyketide Synthase
(Pics Te), Ph 8.0
pdb|1MNA|B Chain B, Thioesterase Domain Of Picromycin Polyketide Synthase
(Pics Te), Ph 8.0
pdb|1MNQ|A Chain A, Thioesterase Domain Of Picromycin Polyketide Synthase
(Pics Te), Ph 8.4
pdb|1MNQ|B Chain B, Thioesterase Domain Of Picromycin Polyketide Synthase
(Pics Te), Ph 8.4
Length = 298
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 94 NINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSLFPQRARLKARQGVKTVGLAEV 153
+++T LDA ++L ++ +V + H LL L+ RL+ G G+ V
Sbjct: 121 DLDTALDAQARAILRAAGDAPVVLLGHSGGALLAHELAF-----RLERAHGAPPAGIVLV 175
Query: 154 DVVNPETGESVKRDGVSLGEVVLRG 178
D P E ++ LGE + G
Sbjct: 176 DPYPPGHQEPIEVWSRQLGEGLFAG 200
>pdb|2H7X|A Chain A, Pikromycin Thioesterase Adduct With Reduced Triketide
Affinity Label
pdb|2H7X|B Chain B, Pikromycin Thioesterase Adduct With Reduced Triketide
Affinity Label
pdb|2H7Y|A Chain A, Pikromycin Thioesterase With Covalent Affinity Label
pdb|2H7Y|B Chain B, Pikromycin Thioesterase With Covalent Affinity Label
pdb|2HFJ|A Chain A, Pikromycin Thioesterase With Covalent Pentaketide Affinity
Label
pdb|2HFJ|B Chain B, Pikromycin Thioesterase With Covalent Pentaketide Affinity
Label
Length = 319
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 94 NINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSLFPQRARLKARQGVKTVGLAEV 153
+++T LDA ++L ++ +V + H LL L+ RL+ G G+ V
Sbjct: 142 DLDTALDAQARAILRAAGDAPVVLLGHSGGALLAHELAF-----RLERAHGAPPAGIVLV 196
Query: 154 DVVNPETGESVKRDGVSLGEVVLRG 178
D P E ++ LGE + G
Sbjct: 197 DPYPPGHQEPIEVWSRQLGEGLFAG 221
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 189 KEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESV 241
++ RRC+ D G FY D G+ E+K +KD++I E+ AE +V
Sbjct: 19 QDEFRRCLRDKGLFYLTDCGLTD----TELKS-AKDIVIDFFEHGSEAEKRAV 66
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 189 KEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESV 241
++ RRC+ D G FY D G+ E+K +KD++I E+ AE +V
Sbjct: 19 QDEFRRCLRDKGLFYLTDCGLTD----TELKS-AKDIVIDFFEHGSEAEKRAV 66
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 189 KEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESV 241
++ RRC+ D G FY D G+ E+K +KD++I E+ AE +V
Sbjct: 19 QDEFRRCLRDKGLFYLTDCGLTD----TELKS-AKDIVIDFFEHGSEAEKRAV 66
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 189 KEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESV 241
++ RRC+ D G FY D G+ E+K +KD++I E+ AE +V
Sbjct: 19 QDEFRRCLRDKGLFYLTDCGLTD----TELKS-AKDLVIDFFEHGSEAEKRAV 66
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 189 KEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESV 241
++ RRC+ D G FY D G+ E+K +KD++I E+ AE +V
Sbjct: 39 QDEFRRCLRDKGLFYLTDCGLTD----TELKS-AKDLVIDFFEHGSEAEKRAV 86
>pdb|1TZ6|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
pdb|1TZ6|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
Length = 339
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 131 SLFPQRARLKARQGVKTVGLAEVDVVNPETGESVKRDG---VSLGEVVLR--GGCVTVGY 185
L P+ + +KA V +G A VD+V + +K G ++G V R G C +G
Sbjct: 13 GLVPRGSHMKAMNKVWVIGDASVDLVPEKQNSYLKCPGGASANVGVCVARLGGECGFIGC 72
Query: 186 FKDKEAT---RRCISDNG 200
D +A R+ DNG
Sbjct: 73 LGDDDAGRFLRQVFQDNG 90
>pdb|1TYY|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TYY|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TZ3|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
pdb|1TZ3|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
Length = 339
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 131 SLFPQRARLKARQGVKTVGLAEVDVVNPETGESVKRDG---VSLGEVVLR--GGCVTVGY 185
L P+ + +KA V +G A VD+V + +K G ++G V R G C +G
Sbjct: 13 GLVPRGSHMKAMNKVWVIGDASVDLVPEKQNSYLKCPGGASANVGVCVARLGGECGFIGC 72
Query: 186 FKDKEAT---RRCISDNG 200
D +A R+ DNG
Sbjct: 73 LGDDDAGRFLRQVFQDNG 90
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 40 TYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPN 74
T TWS+ +RR L VA LS G G V + AP
Sbjct: 58 TLTWSQLYRRTLNVAQELSRCG-STGDRVVISAPQ 91
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl
Amp Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 40 TYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPN 74
T TWS+ +RR L VA LS G G V + AP
Sbjct: 58 TLTWSQLYRRTLNVAQELSRCG-STGDRVVISAPQ 91
>pdb|3C8V|A Chain A, Crystal Structure Of Putative Acetyltransferase
(Yp_390128.1) From Desulfovibrio Desulfuricans G20 At
2.28 A Resolution
pdb|3C8V|B Chain B, Crystal Structure Of Putative Acetyltransferase
(Yp_390128.1) From Desulfovibrio Desulfuricans G20 At
2.28 A Resolution
pdb|3C8V|C Chain C, Crystal Structure Of Putative Acetyltransferase
(Yp_390128.1) From Desulfovibrio Desulfuricans G20 At
2.28 A Resolution
pdb|3C8V|D Chain D, Crystal Structure Of Putative Acetyltransferase
(Yp_390128.1) From Desulfovibrio Desulfuricans G20 At
2.28 A Resolution
Length = 496
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 162 ESVKRDG-VSLGEVVLRGGCVTVGYFKD--KEATRRCISDNGWFYTGDIGVMHA 212
E K DG V+ G RG G F D K+ +R +S+NG F+ G G HA
Sbjct: 412 EFAKVDGEVTXGRXTFRG---KGGPFLDSFKKRIKRILSENGAFFDGSEGTGHA 462
>pdb|1OGB|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGB|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGG|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
pdb|1OGG|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
Length = 499
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 193 RRCISDNGWFYTGDIGVMHAD 213
R S GW+Y+ D+GV HA+
Sbjct: 89 RIMFSIGGWYYSNDLGVSHAN 109
>pdb|1GOI|A Chain A, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
pdb|1GOI|B Chain B, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
Length = 499
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 193 RRCISDNGWFYTGDIGVMHAD 213
R S GW+Y+ D+GV HA+
Sbjct: 89 RIMFSIGGWYYSNDLGVSHAN 109
>pdb|1UR9|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR9|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
Length = 499
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 193 RRCISDNGWFYTGDIGVMHAD 213
R S GW+Y+ D+GV HA+
Sbjct: 89 RIMFSIGGWYYSNDLGVSHAN 109
>pdb|1E15|A Chain A, Chitinase B From Serratia Marcescens
pdb|1E15|B Chain B, Chitinase B From Serratia Marcescens
pdb|1E6R|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1E6R|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1GPF|A Chain A, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1GPF|B Chain B, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1UR8|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR8|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1W1P|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1P|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1T|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1T|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1V|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1V|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1Y|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1W1Y|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1O6I|A Chain A, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4.
pdb|1O6I|B Chain B, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4
Length = 499
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 193 RRCISDNGWFYTGDIGVMHAD 213
R S GW+Y+ D+GV HA+
Sbjct: 89 RIMFSIGGWYYSNDLGVSHAN 109
>pdb|1E6N|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
pdb|1E6P|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6P|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6N|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
Length = 499
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 193 RRCISDNGWFYTGDIGVMHAD 213
R S GW+Y+ D+GV HA+
Sbjct: 89 RIMFSIGGWYYSNDLGVSHAN 109
>pdb|1H0G|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0G|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0I|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
pdb|1H0I|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
Length = 499
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 193 RRCISDNGWFYTGDIGVMHAD 213
R S GW+Y+ D+GV HA+
Sbjct: 89 RIMFSIGGWYYSNDLGVSHAN 109
>pdb|1E6Z|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
pdb|1E6Z|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
Length = 498
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 193 RRCISDNGWFYTGDIGVMHAD 213
R S GW+Y+ D+GV HA+
Sbjct: 88 RIMFSIGGWYYSNDLGVSHAN 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,387,489
Number of Sequences: 62578
Number of extensions: 377149
Number of successful extensions: 1109
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 960
Number of HSP's gapped (non-prelim): 116
length of query: 330
length of database: 14,973,337
effective HSP length: 99
effective length of query: 231
effective length of database: 8,778,115
effective search space: 2027744565
effective search space used: 2027744565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)