Query 048729
Match_columns 330
No_of_seqs 142 out of 1674
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 21:50:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048729.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048729hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 2.1E-56 7.3E-61 422.9 31.6 309 14-329 21-536 (536)
2 4fuq_A Malonyl COA synthetase; 100.0 2.2E-56 7.4E-61 419.7 28.2 304 19-329 4-501 (503)
3 3g7s_A Long-chain-fatty-acid-- 100.0 6.1E-56 2.1E-60 420.9 31.2 317 7-328 11-542 (549)
4 1mdb_A 2,3-dihydroxybenzoate-A 100.0 1.8E-54 6.3E-59 409.8 35.5 309 12-328 22-531 (539)
5 3ivr_A Putative long-chain-fat 100.0 3.8E-56 1.3E-60 418.8 23.2 310 11-329 2-502 (509)
6 3r44_A Fatty acyl COA syntheta 100.0 2E-54 6.8E-59 407.6 31.6 309 9-328 10-513 (517)
7 3o83_A Peptide arylation enzym 100.0 6.6E-55 2.3E-59 413.3 24.2 309 12-329 27-541 (544)
8 3etc_A AMP-binding protein; ad 100.0 5.8E-54 2E-58 409.3 29.4 308 15-328 55-579 (580)
9 1t5h_X 4-chlorobenzoyl COA lig 100.0 3.4E-53 1.1E-57 398.2 33.3 304 15-327 2-503 (504)
10 1v25_A Long-chain-fatty-acid-C 100.0 5.7E-54 1.9E-58 406.6 28.2 312 10-328 13-536 (541)
11 1amu_A GRSA, gramicidin synthe 100.0 1E-53 3.5E-58 406.4 29.5 303 14-326 38-527 (563)
12 3l8c_A D-alanine--poly(phospho 100.0 4.1E-54 1.4E-58 406.1 26.2 312 13-328 2-512 (521)
13 4gr5_A Non-ribosomal peptide s 100.0 4.9E-55 1.7E-59 416.4 19.5 306 13-325 73-568 (570)
14 3fce_A D-alanine--poly(phospho 100.0 4.5E-54 1.5E-58 404.9 25.1 311 15-330 1-506 (512)
15 3rg2_A Enterobactin synthase c 100.0 9.3E-53 3.2E-57 404.2 34.2 306 12-328 24-534 (617)
16 3rix_A Luciferase, luciferin 4 100.0 5.2E-55 1.8E-59 414.6 18.3 314 8-328 13-541 (550)
17 2d1s_A Luciferase, luciferin 4 100.0 5E-52 1.7E-56 393.8 30.8 306 15-328 25-543 (548)
18 3e7w_A D-alanine--poly(phospho 100.0 1.2E-52 4.2E-57 395.0 26.2 309 15-328 1-503 (511)
19 3c5e_A Acyl-coenzyme A synthet 100.0 9.4E-52 3.2E-56 393.4 30.2 311 15-330 38-564 (570)
20 4dg8_A PA1221; ANL superfamily 100.0 1E-52 3.4E-57 403.1 23.2 301 13-328 25-513 (620)
21 1pg4_A Acetyl-COA synthetase; 100.0 1.4E-51 4.8E-56 397.9 28.6 309 15-328 76-621 (652)
22 3tsy_A Fusion protein 4-coumar 100.0 6.3E-53 2.2E-57 424.6 19.7 308 14-328 60-582 (979)
23 3ipl_A 2-succinylbenzoate--COA 100.0 1.6E-51 5.4E-56 386.6 25.5 294 15-328 1-497 (501)
24 2v7b_A Benzoate-coenzyme A lig 100.0 6.1E-51 2.1E-55 385.1 29.6 303 15-325 24-529 (529)
25 3nyq_A Malonyl-COA ligase; A/B 100.0 4.7E-52 1.6E-56 390.2 17.0 301 14-324 21-504 (505)
26 1ry2_A Acetyl-coenzyme A synth 100.0 1.5E-50 5E-55 391.1 27.8 311 15-328 82-637 (663)
27 3ite_A SIDN siderophore synthe 100.0 5.1E-52 1.8E-56 395.2 16.6 315 11-330 16-545 (562)
28 2vsq_A Surfactin synthetase su 100.0 1.9E-50 6.5E-55 416.3 27.9 306 10-325 459-957 (1304)
29 3gqw_A Fatty acid AMP ligase; 100.0 5E-48 1.7E-52 368.8 28.2 304 13-328 19-563 (576)
30 3kxw_A Saframycin MX1 syntheta 100.0 3.1E-48 1.1E-52 371.2 23.3 311 12-328 8-567 (590)
31 4gs5_A Acyl-COA synthetase (AM 100.0 2.1E-35 7.2E-40 265.0 17.4 288 26-329 33-355 (358)
32 3qov_A Phenylacetate-coenzyme 100.0 8.8E-32 3E-36 248.1 22.4 262 41-320 106-429 (436)
33 3t5a_A Long-chain-fatty-acid-- 100.0 1.2E-31 4.2E-36 250.1 20.2 120 7-127 16-147 (480)
34 2y4o_A Phenylacetate-coenzyme 100.0 2.5E-31 8.4E-36 245.6 20.9 266 41-323 112-439 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 3E-30 1E-34 238.0 19.3 263 41-321 110-432 (437)
36 3lax_A Phenylacetate-coenzyme 99.6 1.3E-16 4.4E-21 117.6 5.4 98 220-319 1-101 (109)
37 3gxs_A Phenylacetate-coenzyme 99.6 1.6E-16 5.6E-21 116.9 5.5 99 220-320 1-102 (109)
38 3hgu_A EHPF; phenazine, antibi 99.0 8.9E-10 3E-14 98.7 10.4 172 41-231 111-368 (369)
39 4b2g_A GH3-1 auxin conjugating 97.3 0.00037 1.3E-08 65.4 6.5 58 170-244 397-458 (609)
40 4epl_A Jasmonic acid-amido syn 96.9 0.0032 1.1E-07 58.8 9.1 43 202-244 407-453 (581)
41 4eql_A 4-substituted benzoates 96.9 0.0012 3.9E-08 61.9 5.9 45 202-246 400-448 (581)
42 3ipl_A 2-succinylbenzoate--COA 96.2 0.046 1.6E-06 50.4 12.0 96 28-127 161-266 (501)
43 1mdb_A 2,3-dihydroxybenzoate-A 96.0 0.076 2.6E-06 49.5 12.4 97 28-128 180-288 (539)
44 3o83_A Peptide arylation enzym 95.3 0.14 4.9E-06 47.7 11.4 95 29-127 190-296 (544)
45 2d1s_A Luciferase, luciferin 4 95.2 0.059 2E-06 50.4 8.7 95 30-126 192-297 (548)
46 3rix_A Luciferase, luciferin 4 95.1 0.069 2.4E-06 49.9 8.8 84 41-125 210-294 (550)
47 3r44_A Fatty acyl COA syntheta 94.9 0.25 8.6E-06 45.7 11.7 81 41-126 190-272 (517)
48 3fce_A D-alanine--poly(phospho 94.7 0.078 2.7E-06 49.0 7.8 80 41-123 164-246 (512)
49 3e7w_A D-alanine--poly(phospho 94.6 0.085 2.9E-06 48.8 8.0 81 41-124 163-246 (511)
50 1v25_A Long-chain-fatty-acid-C 94.6 0.14 4.7E-06 47.7 9.3 87 41-128 196-283 (541)
51 1t5h_X 4-chlorobenzoyl COA lig 94.6 0.14 4.9E-06 47.1 9.3 95 28-126 151-258 (504)
52 3kxw_A Saframycin MX1 syntheta 94.5 0.13 4.4E-06 48.4 9.0 94 28-124 165-272 (590)
53 3ivr_A Putative long-chain-fat 94.4 0.26 8.8E-06 45.4 10.6 81 41-126 180-262 (509)
54 3rg2_A Enterobactin synthase c 94.1 0.48 1.6E-05 44.9 12.0 82 41-126 204-288 (617)
55 3g7s_A Long-chain-fatty-acid-- 93.6 0.29 9.9E-06 45.6 9.4 82 41-126 200-282 (549)
56 2v7b_A Benzoate-coenzyme A lig 93.6 0.15 5.2E-06 47.2 7.4 81 41-124 203-286 (529)
57 3ni2_A 4-coumarate:COA ligase; 93.2 0.14 4.7E-06 47.7 6.5 96 28-124 176-283 (536)
58 3c5e_A Acyl-coenzyme A synthet 93.1 0.42 1.4E-05 44.8 9.6 69 58-126 240-311 (570)
59 1amu_A GRSA, gramicidin synthe 92.5 0.2 6.9E-06 46.9 6.6 78 41-121 202-282 (563)
60 3nyq_A Malonyl-COA ligase; A/B 92.2 0.63 2.2E-05 42.8 9.4 94 28-126 153-257 (505)
61 3tsy_A Fusion protein 4-coumar 92.1 0.38 1.3E-05 48.3 8.3 99 28-127 223-333 (979)
62 1pg4_A Acetyl-COA synthetase; 92.0 0.5 1.7E-05 45.1 8.7 84 41-126 276-364 (652)
63 4dg8_A PA1221; ANL superfamily 91.6 0.45 1.5E-05 45.1 7.9 94 28-125 162-266 (620)
64 4fuq_A Malonyl COA synthetase; 91.3 0.64 2.2E-05 42.7 8.4 89 29-123 154-253 (503)
65 3gqw_A Fatty acid AMP ligase; 90.9 0.49 1.7E-05 44.2 7.3 93 29-123 175-281 (576)
66 4gr5_A Non-ribosomal peptide s 90.9 0.58 2E-05 43.8 7.8 95 28-126 212-317 (570)
67 1ry2_A Acetyl-coenzyme A synth 90.8 1 3.5E-05 43.0 9.5 82 41-124 282-368 (663)
68 3t5a_A Long-chain-fatty-acid-- 90.0 0.53 1.8E-05 42.8 6.5 185 28-221 181-480 (480)
69 3l8c_A D-alanine--poly(phospho 89.9 1.2 4.1E-05 41.0 9.0 82 41-123 165-249 (521)
70 3etc_A AMP-binding protein; ad 87.6 1.6 5.4E-05 40.9 8.1 68 59-126 260-330 (580)
71 3ite_A SIDN siderophore synthe 86.1 1.4 4.8E-05 41.0 6.9 84 41-124 195-284 (562)
72 2vsq_A Surfactin synthetase su 84.1 1.6 5.4E-05 45.3 6.7 95 28-126 605-711 (1304)
73 4eez_A Alcohol dehydrogenase 1 54.8 58 0.002 27.7 8.8 77 40-119 136-215 (348)
74 1o69_A Aminotransferase; struc 53.1 66 0.0023 27.8 9.0 60 58-120 65-130 (394)
75 2jwk_A Protein TOLR; periplasm 53.1 30 0.001 21.7 5.2 36 17-52 32-67 (74)
76 3ju7_A Putative PLP-dependent 51.0 38 0.0013 29.3 7.1 58 57-117 70-134 (377)
77 3tbh_A O-acetyl serine sulfhyd 49.0 74 0.0025 27.1 8.4 65 57-121 62-127 (334)
78 3a2b_A Serine palmitoyltransfe 48.3 1.3E+02 0.0044 25.8 10.1 55 62-120 124-181 (398)
79 2e7j_A SEP-tRNA:Cys-tRNA synth 46.7 1.1E+02 0.0038 25.8 9.4 55 62-119 90-154 (371)
80 1eg5_A Aminotransferase; PLP-d 45.9 80 0.0027 26.8 8.3 55 63-118 87-145 (384)
81 3dzz_A Putative pyridoxal 5'-p 45.7 73 0.0025 27.2 8.1 54 62-118 106-166 (391)
82 3f9t_A TDC, L-tyrosine decarbo 43.5 1.5E+02 0.0051 25.1 10.2 55 61-118 119-177 (397)
83 1mdo_A ARNB aminotransferase; 43.5 69 0.0024 27.4 7.6 59 58-120 72-135 (393)
84 3tqh_A Quinone oxidoreductase; 43.0 96 0.0033 26.0 8.2 75 40-119 125-203 (321)
85 3ri6_A O-acetylhomoserine sulf 41.9 1.1E+02 0.0037 27.1 8.6 17 236-252 310-326 (430)
86 3isl_A Purine catabolism prote 41.2 1.1E+02 0.0039 26.2 8.6 57 62-119 83-143 (416)
87 3vc3_A Beta-cyanoalnine syntha 39.3 1.3E+02 0.0043 25.8 8.3 64 58-121 78-142 (344)
88 4h1h_A LMO1638 protein; MCCF-l 38.5 1.3E+02 0.0043 25.6 8.1 60 61-120 8-86 (327)
89 3ijw_A Aminoglycoside N3-acety 38.3 63 0.0022 26.7 5.9 46 51-96 18-73 (268)
90 2ch1_A 3-hydroxykynurenine tra 38.3 1.4E+02 0.0046 25.5 8.6 56 62-118 90-149 (396)
91 1yj7_A ESCJ; mixed alpha/beta, 38.1 1E+02 0.0036 23.4 6.8 70 235-307 92-163 (171)
92 3nnk_A Ureidoglycine-glyoxylat 37.3 1.4E+02 0.0049 25.5 8.7 57 62-119 85-145 (411)
93 1h2b_A Alcohol dehydrogenase; 37.2 1.1E+02 0.0036 26.2 7.7 61 56-119 176-238 (359)
94 3zrp_A Serine-pyruvate aminotr 36.9 1.3E+02 0.0043 25.5 8.2 57 62-119 74-134 (384)
95 3mfq_A TROA, high-affinity zin 36.7 62 0.0021 26.9 5.8 85 43-127 138-227 (282)
96 2z9v_A Aspartate aminotransfer 36.6 1.1E+02 0.0037 26.1 7.7 57 62-119 80-141 (392)
97 3lvm_A Cysteine desulfurase; s 36.5 1.7E+02 0.0058 25.2 9.1 56 63-119 111-170 (423)
98 3sr3_A Microcin immunity prote 36.2 1.4E+02 0.0049 25.4 8.1 60 61-120 9-87 (336)
99 3kax_A Aminotransferase, class 36.1 1.7E+02 0.0057 24.7 8.9 53 62-118 103-162 (383)
100 1zsy_A Mitochondrial 2-enoyl t 36.0 2E+02 0.0069 24.4 9.3 78 40-118 139-222 (357)
101 3zq4_A Ribonuclease J 1, RNAse 35.8 1.8E+02 0.0062 26.8 9.3 67 60-126 319-396 (555)
102 3ujp_A Mn transporter subunit; 35.3 73 0.0025 26.9 6.0 82 43-126 165-253 (307)
103 2nyg_A YOKD protein; PFAM02522 34.8 78 0.0027 26.2 6.0 24 52-75 17-40 (273)
104 3two_A Mannitol dehydrogenase; 34.6 1.4E+02 0.0048 25.3 8.0 74 40-117 149-225 (348)
105 1elu_A L-cysteine/L-cystine C- 34.3 99 0.0034 26.3 7.1 57 61-118 97-160 (390)
106 3n75_A LDC, lysine decarboxyla 34.3 1.3E+02 0.0045 28.8 8.2 56 62-120 232-306 (715)
107 2z61_A Probable aspartate amin 34.0 1.2E+02 0.0042 25.6 7.6 51 62-118 110-160 (370)
108 3s2e_A Zinc-containing alcohol 34.0 1.2E+02 0.004 25.6 7.4 76 40-119 139-217 (340)
109 3ndn_A O-succinylhomoserine su 33.9 1.9E+02 0.0066 25.2 8.9 55 62-118 117-172 (414)
110 3cq5_A Histidinol-phosphate am 33.7 1.7E+02 0.0058 24.7 8.4 53 63-118 114-170 (369)
111 1vjo_A Alanine--glyoxylate ami 33.6 1.8E+02 0.0061 24.7 8.6 55 63-118 107-165 (393)
112 4eb5_A Probable cysteine desul 33.5 84 0.0029 26.6 6.5 11 282-292 300-310 (382)
113 3b8x_A WBDK, pyridoxamine 5-ph 33.4 1.6E+02 0.0056 25.1 8.3 54 61-118 76-134 (390)
114 1toa_A Tromp-1, protein (perip 33.2 92 0.0032 26.3 6.4 83 45-127 174-261 (313)
115 3gi1_A LBP, laminin-binding pr 33.1 77 0.0026 26.4 5.8 82 43-128 156-244 (286)
116 2huf_A Alanine glyoxylate amin 32.8 1.9E+02 0.0064 24.5 8.6 56 62-118 91-150 (393)
117 2prs_A High-affinity zinc upta 32.6 77 0.0026 26.3 5.7 61 68-128 176-239 (284)
118 1d2f_A MALY protein; aminotran 32.5 1.5E+02 0.0052 25.2 8.0 53 63-118 109-168 (390)
119 3tla_A MCCF; serine protease, 32.5 1.6E+02 0.0055 25.6 7.9 60 61-120 39-117 (371)
120 3kki_A CAI-1 autoinducer synth 32.3 1.6E+02 0.0053 25.4 8.0 55 62-120 140-194 (409)
121 3dwg_A Cysteine synthase B; su 32.2 1.9E+02 0.0066 24.3 8.3 63 58-121 65-128 (325)
122 3ecd_A Serine hydroxymethyltra 32.1 1.5E+02 0.005 25.6 7.9 58 62-119 115-179 (425)
123 2o1e_A YCDH; alpha-beta protei 31.7 81 0.0028 26.6 5.8 62 67-128 191-255 (312)
124 1c7n_A Cystalysin; transferase 31.6 1.5E+02 0.0051 25.3 7.8 53 63-118 111-170 (399)
125 4e5s_A MCCFLIKE protein (BA_56 31.6 1.7E+02 0.0056 25.0 7.7 60 61-120 8-86 (331)
126 1vjk_A Molybdopterin convertin 31.5 1.1E+02 0.0039 20.5 5.6 46 14-74 36-95 (98)
127 1ofu_X SULA, hypothetical prot 31.2 1.4E+02 0.0048 21.1 6.7 62 54-115 47-113 (119)
128 3euc_A Histidinol-phosphate am 31.1 1.1E+02 0.0039 25.7 6.9 55 62-119 106-164 (367)
129 4hvk_A Probable cysteine desul 31.1 83 0.0028 26.6 6.0 13 281-293 299-311 (382)
130 3krt_A Crotonyl COA reductase; 31.0 1.5E+02 0.0052 26.3 7.8 76 40-119 198-280 (456)
131 2w8t_A SPT, serine palmitoyltr 30.7 2.6E+02 0.0091 24.2 9.6 55 62-120 145-202 (427)
132 2dr1_A PH1308 protein, 386AA l 30.6 2.3E+02 0.0078 23.8 8.8 56 63-119 93-153 (386)
133 2cvi_A 75AA long hypothetical 30.3 1.1E+02 0.0037 19.6 6.5 49 235-297 15-63 (83)
134 1xvl_A Mn transporter, MNTC pr 30.0 97 0.0033 26.3 6.0 82 44-127 180-268 (321)
135 1t3i_A Probable cysteine desul 29.9 1.2E+02 0.004 26.1 6.8 56 62-118 115-175 (420)
136 3jv7_A ADH-A; dehydrogenase, n 29.8 1.5E+02 0.0052 25.0 7.4 77 41-120 143-224 (345)
137 3t18_A Aminotransferase class 29.7 2.2E+02 0.0074 24.5 8.6 54 62-118 122-184 (413)
138 2cb1_A O-acetyl homoserine sul 29.6 1.9E+02 0.0066 25.0 8.2 54 62-118 92-146 (412)
139 3kgw_A Alanine-glyoxylate amin 29.5 1.6E+02 0.0055 24.9 7.6 57 62-119 95-155 (393)
140 1b9h_A AHBA synthase, protein 29.3 1.4E+02 0.0047 25.5 7.1 57 57-117 70-131 (388)
141 1gu7_A Enoyl-[acyl-carrier-pro 29.1 1.5E+02 0.0051 25.3 7.2 79 40-119 138-223 (364)
142 3hh8_A Metal ABC transporter s 29.1 84 0.0029 26.3 5.4 82 43-126 158-246 (294)
143 4dq6_A Putative pyridoxal phos 28.9 1.5E+02 0.005 25.2 7.2 52 62-118 111-170 (391)
144 3rq1_A Aminotransferase class 28.6 2.5E+02 0.0085 24.1 8.8 47 62-111 123-174 (418)
145 1z7w_A Cysteine synthase; tran 28.5 2.5E+02 0.0087 23.4 8.5 62 58-121 58-122 (322)
146 4ej6_A Putative zinc-binding d 28.2 2.7E+02 0.0092 23.8 8.8 59 56-118 174-233 (370)
147 2pfu_A Biopolymer transport EX 28.1 78 0.0027 21.1 4.2 28 64-91 56-86 (99)
148 1y7l_A O-acetylserine sulfhydr 28.0 2.6E+02 0.009 23.3 8.6 63 57-121 53-117 (316)
149 3hvy_A Cystathionine beta-lyas 28.0 1.7E+02 0.0057 25.9 7.4 59 62-120 113-184 (427)
150 3fpc_A NADP-dependent alcohol 27.5 1.2E+02 0.0042 25.7 6.4 76 40-119 139-218 (352)
151 2c81_A Glutamine-2-deoxy-scyll 27.3 1.1E+02 0.0037 26.6 6.1 58 57-118 74-136 (418)
152 1oft_A SULA, hypothetical prot 27.2 1.7E+02 0.0059 22.0 6.2 37 55-91 90-126 (161)
153 1pl8_A Human sorbitol dehydrog 27.2 1.6E+02 0.0056 25.0 7.1 74 40-118 145-222 (356)
154 3n0l_A Serine hydroxymethyltra 26.9 1E+02 0.0034 26.6 5.8 59 62-120 108-172 (417)
155 3i16_A Aluminum resistance pro 26.9 1.6E+02 0.0056 26.0 7.2 59 62-120 112-184 (427)
156 2djw_A Probable transcriptiona 26.6 1.4E+02 0.0047 19.5 5.6 49 235-297 15-63 (92)
157 2oga_A Transaminase; PLP-depen 26.4 1.6E+02 0.0055 25.3 7.0 58 57-118 95-157 (399)
158 3dxs_X Copper-transporting ATP 25.8 1.2E+02 0.004 18.4 5.9 54 227-292 7-62 (74)
159 2zbc_A 83AA long hypothetical 25.6 1.3E+02 0.0045 19.0 5.9 49 235-297 15-63 (83)
160 1rjw_A ADH-HT, alcohol dehydro 25.5 3E+02 0.01 23.1 8.5 58 56-117 156-213 (339)
161 2duw_A Putative COA-binding pr 25.5 1.1E+02 0.0039 22.2 5.0 11 28-38 12-22 (145)
162 3op7_A Aminotransferase class 25.4 1.4E+02 0.0048 25.2 6.4 54 62-119 102-161 (375)
163 4aec_A Cysteine synthase, mito 25.3 2.8E+02 0.0097 24.6 8.3 63 58-120 166-229 (430)
164 1e5e_A MGL, methionine gamma-l 25.3 2.1E+02 0.0071 24.8 7.6 55 62-118 98-153 (404)
165 4a0s_A Octenoyl-COA reductase/ 25.3 2.2E+02 0.0074 25.1 7.8 75 40-118 190-271 (447)
166 4gs5_A Acyl-COA synthetase (AM 25.2 27 0.00091 30.1 1.6 32 170-203 214-245 (358)
167 2v03_A Cysteine synthase B; py 25.1 2.9E+02 0.01 22.8 8.7 60 59-120 54-115 (303)
168 2pqm_A Cysteine synthase; OASS 25.1 2.5E+02 0.0084 23.9 7.8 58 62-121 75-133 (343)
169 2bkw_A Alanine-glyoxylate amin 25.0 3E+02 0.01 23.0 9.6 56 63-119 84-144 (385)
170 3cx3_A Lipoprotein; zinc-bindi 25.0 55 0.0019 27.2 3.5 61 67-127 178-241 (284)
171 3fdb_A Beta C-S lyase, putativ 24.9 3E+02 0.01 23.0 8.9 56 62-120 102-159 (377)
172 1j32_A Aspartate aminotransfer 24.7 2.6E+02 0.009 23.6 8.1 52 62-117 111-168 (388)
173 2q3b_A Cysteine synthase A; py 24.7 3E+02 0.01 22.8 8.6 63 57-121 58-122 (313)
174 1pq4_A Periplasmic binding pro 24.5 1.6E+02 0.0053 24.5 6.2 81 44-128 168-253 (291)
175 1kmj_A Selenocysteine lyase; p 24.4 1.1E+02 0.0037 26.1 5.6 56 62-118 110-170 (406)
176 3qwb_A Probable quinone oxidor 24.4 3.1E+02 0.011 22.9 9.9 56 60-119 144-200 (334)
177 3ly1_A Putative histidinol-pho 24.3 3E+02 0.01 22.7 9.4 54 62-118 89-147 (354)
178 3l8a_A METC, putative aminotra 24.3 1.8E+02 0.0063 25.1 7.0 55 62-119 140-201 (421)
179 4b7c_A Probable oxidoreductase 24.2 3.1E+02 0.011 22.8 8.9 58 58-118 143-201 (336)
180 1y81_A Conserved hypothetical 24.1 1.4E+02 0.0047 21.6 5.2 49 66-115 71-119 (138)
181 3sma_A FRBF; N-acetyl transfer 23.9 59 0.002 27.2 3.4 52 37-95 18-79 (286)
182 2r2n_A Kynurenine/alpha-aminoa 23.6 3.1E+02 0.011 23.7 8.5 44 63-109 130-176 (425)
183 4dup_A Quinone oxidoreductase; 23.6 2.7E+02 0.0093 23.5 7.9 75 40-118 139-218 (353)
184 3jx9_A Putative phosphoheptose 23.3 94 0.0032 23.6 4.2 39 59-97 72-112 (170)
185 1y80_A Predicted cobalamin bin 23.3 2.6E+02 0.0089 21.6 8.2 85 39-123 55-150 (210)
186 1e3j_A NADP(H)-dependent ketos 23.2 2.2E+02 0.0074 24.1 7.1 74 40-118 142-218 (352)
187 3nra_A Aspartate aminotransfer 22.8 3.4E+02 0.012 23.0 8.5 53 62-118 123-185 (407)
188 4dcz_A DNAJ-like protein Mg200 22.8 26 0.00089 22.7 0.8 28 207-238 55-82 (92)
189 2cf5_A Atccad5, CAD, cinnamyl 22.6 1.8E+02 0.0061 24.7 6.5 78 39-119 151-232 (357)
190 1fc4_A 2-amino-3-ketobutyrate 22.6 2.8E+02 0.0095 23.6 7.9 52 63-118 127-183 (401)
191 2rfv_A Methionine gamma-lyase; 22.5 2.9E+02 0.01 23.5 8.0 55 62-118 100-155 (398)
192 2ctz_A O-acetyl-L-homoserine s 22.5 2.7E+02 0.0093 24.2 7.8 56 62-119 94-151 (421)
193 3tqx_A 2-amino-3-ketobutyrate 22.5 1.9E+02 0.0065 24.5 6.7 55 62-120 124-183 (399)
194 1kol_A Formaldehyde dehydrogen 22.4 2.3E+02 0.0078 24.5 7.2 55 57-115 178-233 (398)
195 3pc3_A CG1753, isoform A; CBS, 22.1 3.1E+02 0.011 24.9 8.3 60 59-120 106-167 (527)
196 1jvb_A NAD(H)-dependent alcoho 22.0 3.2E+02 0.011 23.0 8.0 77 39-118 142-222 (347)
197 2ayi_A Aminopeptidase T; metal 21.9 1.5E+02 0.0051 26.1 5.8 49 47-95 5-57 (408)
198 2egu_A Cysteine synthase; O-ac 21.9 3.4E+02 0.012 22.4 8.1 62 58-121 57-120 (308)
199 1p0f_A NADP-dependent alcohol 21.6 2.6E+02 0.009 23.8 7.4 57 59-119 186-243 (373)
200 4eye_A Probable oxidoreductase 21.5 2.8E+02 0.0097 23.3 7.5 76 40-119 131-211 (342)
201 2h6e_A ADH-4, D-arabinose 1-de 21.3 2.4E+02 0.0083 23.7 7.0 54 61-118 168-222 (344)
202 1yqd_A Sinapyl alcohol dehydro 20.9 2.6E+02 0.009 23.8 7.2 60 56-118 178-238 (366)
203 2dkj_A Serine hydroxymethyltra 20.9 67 0.0023 27.7 3.4 57 62-118 106-169 (407)
204 3uog_A Alcohol dehydrogenase; 20.9 2.5E+02 0.0085 23.9 7.1 76 39-118 160-239 (363)
205 4a2c_A Galactitol-1-phosphate 20.7 3.7E+02 0.013 22.4 8.8 62 55-120 151-213 (346)
206 2d59_A Hypothetical protein PH 20.7 1.5E+02 0.0053 21.4 4.9 11 28-38 21-31 (144)
207 2zyj_A Alpha-aminodipate amino 20.6 2.6E+02 0.0088 23.8 7.2 53 62-117 112-167 (397)
208 2cvh_A DNA repair and recombin 20.3 2.8E+02 0.0097 21.0 6.8 52 61-113 16-71 (220)
209 1qgn_A Protein (cystathionine 20.3 4.5E+02 0.015 23.2 9.1 55 63-118 151-206 (445)
210 3nvb_A Uncharacterized protein 20.2 4.3E+02 0.015 23.0 8.8 78 44-125 255-341 (387)
211 3cog_A Cystathionine gamma-lya 20.1 3.3E+02 0.011 23.5 7.8 46 63-109 103-149 (403)
212 2dph_A Formaldehyde dismutase; 20.1 2.7E+02 0.0092 24.0 7.2 54 57-114 178-232 (398)
213 4dvj_A Putative zinc-dependent 20.1 2.6E+02 0.009 23.8 7.0 78 40-120 138-225 (363)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=2.1e-56 Score=422.89 Aligned_cols=309 Identities=30% Similarity=0.449 Sum_probs=276.4
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEeC--CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcE
Q 048729 14 PLTTLGFLERAAAAYTDCPSLVYN--NTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAI 91 (330)
Q Consensus 14 ~~~~~~~l~~~~~~~p~~~a~~~~--~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~ 91 (330)
..|+.++|.++++++||++|+++. ++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 21 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav 100 (536)
T 3ni2_A 21 NLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAI 100 (536)
T ss_dssp SCCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred CCcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCE
Confidence 479999999999999999999985 688999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhc----------------------------cC------c---
Q 048729 92 LNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALS----------------------------LF------P--- 134 (330)
Q Consensus 92 ~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~----------------------------~~------~--- 134 (330)
++|+++.++.+++.++++..++++++++......+..... .. +
T Consensus 101 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 180 (536)
T 3ni2_A 101 ITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCLHFSELTQADENEAPQVDISPDDV 180 (536)
T ss_dssp EEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSCCCTTCEETHHHHTSCGGGCCCCCCCTTSE
T ss_pred EeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecCCCCCccCHHHHhhccccccccCCCCccCE
Confidence 9999999999999999999999999998766544432110 00 0
Q ss_pred --------------------------------------------------------------------------------
Q 048729 135 -------------------------------------------------------------------------------- 134 (330)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (330)
T Consensus 181 a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~ 260 (536)
T 3ni2_A 181 VALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEI 260 (536)
T ss_dssp EECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCH
T ss_pred EEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCH
Confidence
Q ss_pred -------------------------------------------------------------------------hH-----
Q 048729 135 -------------------------------------------------------------------------QR----- 136 (330)
Q Consensus 135 -------------------------------------------------------------------------~~----- 136 (330)
+.
T Consensus 261 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~ 340 (536)
T 3ni2_A 261 GSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLA 340 (536)
T ss_dssp HHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEE
T ss_pred HHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhh
Confidence 00
Q ss_pred ----------HHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCc
Q 048729 137 ----------ARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGD 206 (330)
Q Consensus 137 ----------~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD 206 (330)
.....++|.|++|. +++|+|+++|++++.+ +.|||+++|++++.||+++|+.+.+.|..+|||+|||
T Consensus 341 ~~~~~~~~~~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGD 417 (536)
T 3ni2_A 341 MCLAFAKEPFDIKPGACGTVVRNA-EMKIVDPETGASLPRN--QPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGD 417 (536)
T ss_dssp ECGGGSSSCCCCCTTCCCEECSSC-EEEEECTTTCCBCCTT--CCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEE
T ss_pred cccccCCccccCCCCCeeEeCCCc-EEEEEeCCCCcCCCCC--CccEEEEeCcccchhhcCChhHHHhhccCCCceEccc
Confidence 01123467777885 8999997789999998 8899999999999999999999999998799999999
Q ss_pred eEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHH
Q 048729 207 IGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEI 286 (330)
Q Consensus 207 ~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l 286 (330)
+|++|+||+++++||.||+||++|++|+|.+||+.|.+||+|.+++|++.+++..++.++++++..++.. .+.+++
T Consensus 418 l~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~----~~~~~l 493 (536)
T 3ni2_A 418 IGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQ----ATEDEI 493 (536)
T ss_dssp EEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC----CCHHHH
T ss_pred EEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCC----CCHHHH
Confidence 9999999999999999999999999999999999999999999999999998888889999999887765 678999
Q ss_pred HHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhhc
Q 048729 287 IEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKSV 329 (330)
Q Consensus 287 ~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~ 329 (330)
++.++++|+.|++|..++++++||+|++||++|++|++++.++
T Consensus 494 ~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~l 536 (536)
T 3ni2_A 494 KQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAGI 536 (536)
T ss_dssp HHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC----
T ss_pred HHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhccC
Confidence 9999999999999999999999999999999999999998764
No 2
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=2.2e-56 Score=419.66 Aligned_cols=304 Identities=28% Similarity=0.459 Sum_probs=272.0
Q ss_pred HHHHHHHHhcCCCcEEE---eCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeec
Q 048729 19 GFLERAAAAYTDCPSLV---YNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNI 95 (330)
Q Consensus 19 ~~l~~~~~~~p~~~a~~---~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l 95 (330)
++|.+.++++|+++++. +.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 83 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL 83 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence 47888999999999988 467899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhc--------------------------cC------c---------
Q 048729 96 NTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALS--------------------------LF------P--------- 134 (330)
Q Consensus 96 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~--------------------------~~------~--------- 134 (330)
++.++.+++.++++..+++++++++.....+..... .. +
T Consensus 84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~T 163 (503)
T 4fuq_A 84 NTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYT 163 (503)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTTSCSHHHHHHHTSCSCCCCCCCCTTSEEEEEEC
T ss_pred CCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCCcccccchhhhcCCCCcCcCCCCCCCeEEEEEC
Confidence 999999999999999999999998754332111000 00 0
Q ss_pred --------------------------------------------------------------------------------
Q 048729 135 -------------------------------------------------------------------------------- 134 (330)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (330)
T Consensus 164 SGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~ 243 (503)
T 4fuq_A 164 SGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMARA 243 (503)
T ss_dssp C--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHHHHHTTC
T ss_pred CCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHHHHHhhc
Confidence
Q ss_pred ----------------------------------------------------------------------hHHHHhhccC
Q 048729 135 ----------------------------------------------------------------------QRARLKARQG 144 (330)
Q Consensus 135 ----------------------------------------------------------------------~~~~~~~~~G 144 (330)
.......++|
T Consensus 244 t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~G 323 (503)
T 4fuq_A 244 TVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVG 323 (503)
T ss_dssp CEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCSSSCCCTTEEE
T ss_pred CEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCCCCCCcCCccc
Confidence 0011123466
Q ss_pred CcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecCceEEEEecCCC
Q 048729 145 VKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKD 224 (330)
Q Consensus 145 ~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd 224 (330)
.|++|. +++|+|+++|++++.+ +.|||+++|++++.||+++|+.+.+.|..+|||+|||+|++|+||.++++||.||
T Consensus 324 ~p~~~~-~~~i~d~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd 400 (503)
T 4fuq_A 324 PALPGV-SARVTDPETGKELPRG--DIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKD 400 (503)
T ss_dssp EBCTTC-EEEEECTTTCCBCCTT--CCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTT
T ss_pred cCCCCe-EEEEEECCCCCCCcCC--CceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCC
Confidence 677775 8899996699999999 8899999999999999999999999998899999999999999999999999999
Q ss_pred eEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEE
Q 048729 225 VIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVV 304 (330)
Q Consensus 225 ~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~ 304 (330)
+||++|++|+|.+||+.|.+||+|.+++|++.+++..++.+.++++..++.. .+.+++++.++++|+.|++|+.|+
T Consensus 401 ~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~----~~~~~l~~~l~~~L~~~~~P~~i~ 476 (503)
T 4fuq_A 401 LVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGAT----IDEAQVLHGLDGQLAKFKMPKKVI 476 (503)
T ss_dssp CEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC----CCHHHHHHHHBTTBCGGGCCSEEE
T ss_pred EEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCC----CCHHHHHHHHHhhcccCCCCCEEE
Confidence 9999999999999999999999999999999998888889999999888765 778999999999999999999999
Q ss_pred EccCCCCCCCCcccHHHHHHHhhhc
Q 048729 305 FSEELPKTSTGKIQKYLLREFAKSV 329 (330)
Q Consensus 305 ~v~~lP~t~~GKv~r~~l~~~~~~~ 329 (330)
++++||+|++||++|++|+++++++
T Consensus 477 ~v~~lP~t~~GKi~R~~L~~~~~~~ 501 (503)
T 4fuq_A 477 FVDDLPRNTMGKVQKNVLRETYKDI 501 (503)
T ss_dssp EESCCCBCTTSCBCHHHHHHHTTTT
T ss_pred EECCCCCCcccceeHHHHHHHHHHh
Confidence 9999999999999999999999875
No 3
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=6.1e-56 Score=420.94 Aligned_cols=317 Identities=29% Similarity=0.443 Sum_probs=240.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCCCcEEEeCC--------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH
Q 048729 7 PNSANSTPLTTLGFLERAAAAYTDCPSLVYNN--------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM 78 (330)
Q Consensus 7 ~~~~~~~~~~~~~~l~~~~~~~p~~~a~~~~~--------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~ 78 (330)
.++.+.+..|+.++|.++++++||++|+++.+ +++||+||.++++++|++|.+.|+++||+|+++++|++++
T Consensus 11 ~p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~ 90 (549)
T 3g7s_A 11 FPSLYYPKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDY 90 (549)
T ss_dssp CCCCCCCCCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH
T ss_pred CCCCCcCCCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH
Confidence 34556778899999999999999999999876 8899999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhcc--------------------------
Q 048729 79 YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSL-------------------------- 132 (330)
Q Consensus 79 ~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~-------------------------- 132 (330)
++++|||+++|++++|+++.++.+++.++++..++++++++......+......
T Consensus 91 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (549)
T 3g7s_A 91 VMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGGEVNSLSEVMDSGSED 170 (549)
T ss_dssp HHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETCSSSCHHHHHHHSCSC
T ss_pred HHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCCCCcCHHHHHhcCccc
Confidence 999999999999999999999999999999999999999987665543321100
Q ss_pred ----------C-c-------------------------------------------------------------------
Q 048729 133 ----------F-P------------------------------------------------------------------- 134 (330)
Q Consensus 133 ----------~-~------------------------------------------------------------------- 134 (330)
. .
T Consensus 171 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~ 250 (549)
T 3g7s_A 171 FENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYV 250 (549)
T ss_dssp CCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEE
T ss_pred cccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEE
Confidence 0 0
Q ss_pred ----------------------------------------------------------------h---------------
Q 048729 135 ----------------------------------------------------------------Q--------------- 135 (330)
Q Consensus 135 ----------------------------------------------------------------~--------------- 135 (330)
.
T Consensus 251 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~ 330 (549)
T 3g7s_A 251 VMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLR 330 (549)
T ss_dssp EESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCE
T ss_pred EcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCcccc
Confidence 0
Q ss_pred --------------------HHHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhcc
Q 048729 136 --------------------RARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRC 195 (330)
Q Consensus 136 --------------------~~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~ 195 (330)
......++|.|++|. +++|+|+++|++++.+ +.|||+++|++++.|||++|+.+.+.
T Consensus 331 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i~d~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~ 407 (549)
T 3g7s_A 331 HNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDI-ELKVISLEDGRELGVG--ESGEIVIRGPNIFKGYWKREKENQEC 407 (549)
T ss_dssp EEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTC-EEEEECSSSCCEECTT--CCEEEEEESTTSCSEETTCTTGGGTS
T ss_pred ccceEeccccchhhhcCCccccCcCCCccccCCCC-EEEEEeCCCCcCCCCC--CceEEEEECcchhhhhCCChhhhhhh
Confidence 001122345555664 6788896699999998 88999999999999999999999988
Q ss_pred cc--CCC--eEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEe
Q 048729 196 IS--DNG--WFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSL 271 (330)
Q Consensus 196 ~~--~~g--~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~ 271 (330)
|. .+| ||+|||+|++|+||.++|+||.||+||++|++|+|.+||+.|.+||+|.+++|++.+++..++.+.+++++
T Consensus 408 f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~ 487 (549)
T 3g7s_A 408 WWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVL 487 (549)
T ss_dssp EEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEE
T ss_pred hhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEE
Confidence 73 477 99999999999999999999999999999999999999999999999999999999998888999999998
Q ss_pred cCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729 272 KRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS 328 (330)
Q Consensus 272 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~ 328 (330)
.++... ..+.+++++.++++|+.|++|+.|+++++||+|++||++|++|++.+.+
T Consensus 488 ~~~~~~--~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 542 (549)
T 3g7s_A 488 KPEYRG--KVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAE 542 (549)
T ss_dssp CSTTTT--SCCHHHHHHHHHTTCC-----CCCCEEEECC------------------
T ss_pred CCCccC--cCCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhc
Confidence 876321 1678999999999999999999999999999999999999999998764
No 4
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=1.8e-54 Score=409.81 Aligned_cols=309 Identities=28% Similarity=0.459 Sum_probs=276.7
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcE
Q 048729 12 STPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAI 91 (330)
Q Consensus 12 ~~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~ 91 (330)
+...|+.++|.++++.+||++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 22 ~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 101 (539)
T 1mdb_A 22 WAGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGAL 101 (539)
T ss_dssp SCSCCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred ccCCCHHHHHHHHHHHCCCCEEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeE
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCHHHHHHHHHhcCCcEEEEcccch--------HHHHHHh----------------------c---cCc----
Q 048729 92 LNNINTRLDAHTLSVLLQHSESKLVFVDHLHT--------YLLLEAL----------------------S---LFP---- 134 (330)
Q Consensus 92 ~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~--------~~~~~~~----------------------~---~~~---- 134 (330)
++|+++.++.+++.++++..+++++++++... ..+.... . ...
T Consensus 102 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (539)
T 1mdb_A 102 PVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKS 181 (539)
T ss_dssp EEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTTSEEGGGCCCCCCCCCCCCT
T ss_pred EecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCccchhhhhhccccccccCCCCc
Confidence 99999999999999999999999999976531 1111000 0 000
Q ss_pred --------------------------------------------------------------------------------
Q 048729 135 -------------------------------------------------------------------------------- 134 (330)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (330)
T Consensus 182 ~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~ 261 (539)
T 1mdb_A 182 SDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSP 261 (539)
T ss_dssp TSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSH
T ss_pred CceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECCCCCH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 048729 135 -------------------------------------------------------------------------------- 134 (330)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (330)
T Consensus 262 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~ 341 (539)
T 1mdb_A 262 DDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTR 341 (539)
T ss_dssp HHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECC
T ss_pred HHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccC
Confidence
Q ss_pred ---hHHHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEe
Q 048729 135 ---QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMH 211 (330)
Q Consensus 135 ---~~~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~ 211 (330)
.......++|.|+.+.++++|+|+ +|++++.+ +.|||+++|++++.|||++|+.+.+.|..+|||+|||+|++|
T Consensus 342 ~~~~~~~~~~~~G~p~~~~~~~~i~d~-~~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~ 418 (539)
T 1mdb_A 342 LDDPEEIIVNTQGKPMSPYDESRVWDD-HDRDVKPG--ETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLT 418 (539)
T ss_dssp TTSCHHHHHHCCCEESSTTCEEEEECT-TSCBCCTT--CCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEEC
T ss_pred CCCcHHhcCCCCCcccCCCceEEEECC-CCCCCcCC--CcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEEC
Confidence 112345678888876668999998 89999998 889999999999999999999999999779999999999999
Q ss_pred cCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHH
Q 048729 212 ADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR 291 (330)
Q Consensus 212 ~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~ 291 (330)
+||+++++||.||+||++|++|+|.+||+.|.+||+|.+++|++.+++..++.++++++.... . .+.+++++.++
T Consensus 419 ~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~-~----~~~~~l~~~l~ 493 (539)
T 1mdb_A 419 RDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDE-A----PKAAELKAFLR 493 (539)
T ss_dssp TTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSS-C----CCHHHHHHHHH
T ss_pred CCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCC-C----CCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988888899999987742 2 57899999999
Q ss_pred hc-CCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729 292 AR-LPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS 328 (330)
Q Consensus 292 ~~-l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~ 328 (330)
++ |+.|++|+.|+++++||+|++||++|++|++++.+
T Consensus 494 ~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 531 (539)
T 1mdb_A 494 ERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISE 531 (539)
T ss_dssp HTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHH
T ss_pred hCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHH
Confidence 98 99999999999999999999999999999998764
No 5
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=3.8e-56 Score=418.78 Aligned_cols=310 Identities=29% Similarity=0.439 Sum_probs=183.5
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCc
Q 048729 11 NSTPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGA 90 (330)
Q Consensus 11 ~~~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~ 90 (330)
...++|+.++|.++++++||++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|+
T Consensus 2 s~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga 81 (509)
T 3ivr_A 2 SLHDFTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGA 81 (509)
T ss_dssp CTTCCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTC
T ss_pred CCCcCCHHHHHHHHHHHCCCceEEEECCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhcc--------------------------Cc----------
Q 048729 91 ILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSL--------------------------FP---------- 134 (330)
Q Consensus 91 ~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~--------------------------~~---------- 134 (330)
+++|+++.++.+++.++++..++++++++......+...... ..
T Consensus 82 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 161 (509)
T 3ivr_A 82 ILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGPFAPFKDLASDTPFSAPEFGAAD 161 (509)
T ss_dssp EEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCSSCEEGGGTCCCSCCCCCCCCTTS
T ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCcChhhHhhccCCCCCCcCCCCccc
Confidence 999999999999999999999999999998776553222100 00
Q ss_pred --------------------------------------------------------------------------------
Q 048729 135 -------------------------------------------------------------------------------- 134 (330)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (330)
T Consensus 162 ~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~ 241 (509)
T 3ivr_A 162 GFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAA 241 (509)
T ss_dssp EEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHH
T ss_pred cEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEecccCHHHHH
Confidence
Q ss_pred -------------------------------------------------------------------------hHHHHhh
Q 048729 135 -------------------------------------------------------------------------QRARLKA 141 (330)
Q Consensus 135 -------------------------------------------------------------------------~~~~~~~ 141 (330)
.......
T Consensus 242 ~~i~~~~~t~~~~~p~~~~~l~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~ 321 (509)
T 3ivr_A 242 RDIEAHKVTVMAEFAPMLGNILDQAAPAQLASLRAVTGLDTPETIERFEATCPNATFWATFGQSETSGLSTFAPYRDRPK 321 (509)
T ss_dssp HHHHHHTCCEEEEETTHHHHHHHHCCGGGGTTCCEEEEECCHHHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGGSTT
T ss_pred HHHHHHCCcEEEecHHHHHHHHhcccccchhhhheecccCChHHHHHHHHhcCCCeEEcccCccccccccccCccccCCC
Confidence 0011122
Q ss_pred ccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecCceEEEEec
Q 048729 142 RQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDR 221 (330)
Q Consensus 142 ~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR 221 (330)
++|.|++|. +++|+|+ +|++++.+ +.|||+++|++++.||+++|+.+.+.|. +|||+|||+|++|++|+++++||
T Consensus 322 ~~G~p~~~~-~~~i~d~-~~~~~~~g--~~GEl~v~g~~~~~gY~~~~~~t~~~f~-~g~~~TGDl~~~~~dG~l~~~GR 396 (509)
T 3ivr_A 322 SAGRPLFWR-TVAVVDA-EDRPLPPG--EVGEIVLRGPTVFKGYWNNAAATQHAFR-NGWHHTGDMGRFDADGYLFYAGR 396 (509)
T ss_dssp SCCEECTTC-EEEEECT-TSCBCCTT--CCEEEEEESTTSCCEETTCHHHHHHHTG-GGSEEEEEEEEECTTSCEEEEEE
T ss_pred cccccCCCc-EEEEECC-CCCCCCCC--CceEEEEecCCccccccCCHHHhHHHhh-cCCcccccEEEECCCceEEEeCC
Confidence 357777775 8899998 79999998 8899999999999999999999999998 89999999999999999999999
Q ss_pred C--CCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCC
Q 048729 222 S--KDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMV 299 (330)
Q Consensus 222 ~--dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 299 (330)
. +|+||++|++|+|.+||+.|.+||+|.+++|++.+++..++.+.+++++.++.. .+.+++++.++++|+.|++
T Consensus 397 ~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~----~~~~~l~~~l~~~L~~~~~ 472 (509)
T 3ivr_A 397 APEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGES----IAADALAEFVASLIARYKK 472 (509)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred CCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCC----CCHHHHHHHHHhhCcccCC
Confidence 9 899999999999999999999999999999999999888889999999887755 6678999999999999999
Q ss_pred CceEEEccCCCCCCCCcccHHHHHHHhhhc
Q 048729 300 PRKVVFSEELPKTSTGKIQKYLLREFAKSV 329 (330)
Q Consensus 300 p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~ 329 (330)
|+.|+++++||+|++||++|++|++++++.
T Consensus 473 P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~ 502 (509)
T 3ivr_A 473 PKHVVFVEALPKDAKGAIDRAAVKTAHGQE 502 (509)
T ss_dssp ------------------------------
T ss_pred CcEEEEecCCCCCCCCCccHHHHHHHHhhc
Confidence 999999999999999999999999998753
No 6
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=2e-54 Score=407.62 Aligned_cols=309 Identities=36% Similarity=0.546 Sum_probs=270.0
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCcEEEeCCe--eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhh
Q 048729 9 SANSTPLTTLGFLERAAAAYTDCPSLVYNNT--TYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVP 86 (330)
Q Consensus 9 ~~~~~~~~~~~~l~~~~~~~p~~~a~~~~~~--~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~ 86 (330)
.......|+.++|.++++.+|+++|+++.++ ++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+
T Consensus 10 ~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 89 (517)
T 3r44_A 10 DDDDKMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAA 89 (517)
T ss_dssp --CGGGGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred CCcccccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHH
Confidence 3344567999999999999999999999776 99999999999999999999999999999999999999999999999
Q ss_pred hcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhcc--------------------------Cc------
Q 048729 87 MSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSL--------------------------FP------ 134 (330)
Q Consensus 87 ~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~--------------------------~~------ 134 (330)
++|++++|+++.++.+++.++++..++++++++......+...... ..
T Consensus 90 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (517)
T 3r44_A 90 KLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLRSAAADEPAVECGG 169 (517)
T ss_dssp HHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEEHHHHHHHHHHCCCCCCCCCCCT
T ss_pred HhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccCcccHHHHhhccCcCCCCCCCCC
Confidence 9999999999999999999999999999999987655433221100 00
Q ss_pred --------------------------------------------------------------------------------
Q 048729 135 -------------------------------------------------------------------------------- 134 (330)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (330)
T Consensus 170 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~ 249 (517)
T 3r44_A 170 DDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATK 249 (517)
T ss_dssp TSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHH
T ss_pred CCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHhcCeEEEEeCCCCHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 048729 135 -------------------------------------------------------------------------------- 134 (330)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (330)
T Consensus 250 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~ 329 (517)
T 3r44_A 250 VWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLS 329 (517)
T ss_dssp HHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGTTCEEEECG
T ss_pred HHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhcCCcEEEeecccccccceeecCC
Confidence
Q ss_pred -hHHHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecC
Q 048729 135 -QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHAD 213 (330)
Q Consensus 135 -~~~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~ 213 (330)
.......+.|.|+++. ++.++|+ +|.+++.+ .|||+++|++++.||+++|+.+.+.|. +|||+|||+|++|+|
T Consensus 330 ~~~~~~~~~~G~~~~~~-~~~i~d~-~~~~~~~g---~GEl~v~g~~v~~GY~~~p~~t~~~f~-~g~~~TGDl~~~~~d 403 (517)
T 3r44_A 330 EDALRKAGSAGRATMFT-DVAVRGD-DGVIREHG---EGEVVIKSDILLKEYWNRPEATRDAFD-NGWFRTGDIGEIDDE 403 (517)
T ss_dssp GGTTTTTTCCBEECTTE-EEEEECT-TSCEESSE---EEEEEEEETTSCSEETTCHHHHHHTEE-TTEEEEEEEEEECTT
T ss_pred ccccccCCCCCcCCCCe-EEEEECC-CCCCCCCC---CeEEEEeCcchhhhhCCChhhhHhhhc-CCCEecceeEEEcCC
Confidence 0011233455566664 6777887 77777664 599999999999999999999999997 899999999999999
Q ss_pred ceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhc
Q 048729 214 GYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRAR 293 (330)
Q Consensus 214 G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~ 293 (330)
|+++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.+.+++ +.++.. .+.+++++.++++
T Consensus 404 G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~----~~~~~l~~~l~~~ 478 (517)
T 3r44_A 404 GYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNE----VSEQQIVEYCGTR 478 (517)
T ss_dssp SCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTT----CCHHHHHHHHHHH
T ss_pred eeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCC----CCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999888888888887 555444 6789999999999
Q ss_pred CCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729 294 LPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS 328 (330)
Q Consensus 294 l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~ 328 (330)
|+.|++|+.|+++++||+|++||++|++|++++.+
T Consensus 479 L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 513 (517)
T 3r44_A 479 LARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSA 513 (517)
T ss_dssp SCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGG
T ss_pred CCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHh
Confidence 99999999999999999999999999999999865
No 7
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=6.6e-55 Score=413.30 Aligned_cols=309 Identities=22% Similarity=0.357 Sum_probs=183.6
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcE
Q 048729 12 STPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAI 91 (330)
Q Consensus 12 ~~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~ 91 (330)
....|+.++|.++++++||++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 27 ~~~~tl~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav 106 (544)
T 3o83_A 27 WIDQPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVV 106 (544)
T ss_dssp CCCCCTTHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred CCCCCHHHHHHHHHHhCCCceEEEcCCCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcE
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCHHHHHHHHHhcCCcEEEEcccch--------HHHHHHh-------------------------c-------
Q 048729 92 LNNINTRLDAHTLSVLLQHSESKLVFVDHLHT--------YLLLEAL-------------------------S------- 131 (330)
Q Consensus 92 ~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~--------~~~~~~~-------------------------~------- 131 (330)
++|+++.++.+++.++++..++++++++.... ..+.... .
T Consensus 107 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (544)
T 3o83_A 107 VLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPAETFVDFS 186 (544)
T ss_dssp EEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTTSEEHHHHHHSCCSSCCCCC
T ss_pred EecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCccccchhhhhhcccccccccc
Confidence 99999999999999999999999999876542 1111000 0
Q ss_pred cC-c----------------------------------------------------------------------------
Q 048729 132 LF-P---------------------------------------------------------------------------- 134 (330)
Q Consensus 132 ~~-~---------------------------------------------------------------------------- 134 (330)
.. .
T Consensus 187 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~ 266 (544)
T 3o83_A 187 STPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAP 266 (544)
T ss_dssp CCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS
T ss_pred cCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECC
Confidence 00 0
Q ss_pred --------------------------------------------------------------------------------
Q 048729 135 -------------------------------------------------------------------------------- 134 (330)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (330)
T Consensus 267 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~ 346 (544)
T 3o83_A 267 NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLV 346 (544)
T ss_dssp SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCE
T ss_pred CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccc
Confidence
Q ss_pred -------hHHHHhhccCCcc-cCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCc
Q 048729 135 -------QRARLKARQGVKT-VGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGD 206 (330)
Q Consensus 135 -------~~~~~~~~~G~~~-~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD 206 (330)
.......++|.|+ .+ ++++|+|+ +|++++.+ +.|||+++|++++.||+++|+.+...|..+|||+|||
T Consensus 347 ~~~~~~~~~~~~~~~~G~p~~~~-~~~~i~d~-~~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGD 422 (544)
T 3o83_A 347 NYTRLDDSDEQIFTTQGRPISSD-DEIKIVDE-QYREVPEG--EIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGD 422 (544)
T ss_dssp EECCTTSCHHHHHHCCCEESCTT-CEEEEECT-TSCBCCTT--CCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEE
T ss_pred eeecCCCchhhccCCCceecCCC-cEEEEECC-CCCCCCCC--CeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCC
Confidence 1223456778886 55 49999997 89999999 8899999999999999999999999997799999999
Q ss_pred eEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHH
Q 048729 207 IGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEI 286 (330)
Q Consensus 207 ~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l 286 (330)
+|++|+||+++++||.||+||++|++|+|.+||+.|.+||+|.+++|++..++..++.++++++..+.. .+..++
T Consensus 423 lg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~-----~~~~~l 497 (544)
T 3o83_A 423 LVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPE-----LKAVVL 497 (544)
T ss_dssp EEEECTTSCEEEEEEEC---------------------------------------------------------------
T ss_pred EEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCC-----CCHHHH
Confidence 999999999999999999999999999999999999999999999999999988888999999877632 566788
Q ss_pred HHHHHh-cCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhhc
Q 048729 287 IEYCRA-RLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKSV 329 (330)
Q Consensus 287 ~~~l~~-~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~ 329 (330)
++.+++ +|+.|++|..++++++||+|++||++|++|++++.+.
T Consensus 498 ~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 541 (544)
T 3o83_A 498 RRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTS 541 (544)
T ss_dssp --------------------------------------------
T ss_pred HHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhc
Confidence 899988 7999999999999999999999999999999998754
No 8
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=5.8e-54 Score=409.28 Aligned_cols=308 Identities=23% Similarity=0.318 Sum_probs=251.9
Q ss_pred CCHH-HHHHHHHHhcCCCcEEEe-----CCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhc
Q 048729 15 LTTL-GFLERAAAAYTDCPSLVY-----NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMS 88 (330)
Q Consensus 15 ~~~~-~~l~~~~~~~p~~~a~~~-----~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~ 88 (330)
.++. ++|.+.++.+||++|+++ .++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++
T Consensus 55 ~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~~ 134 (580)
T 3etc_A 55 FNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKL 134 (580)
T ss_dssp CCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhC
Confidence 4555 999999999999999996 2478999999999999999999999999999999999999999999999999
Q ss_pred CcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccch--HHHHHHh--------------------------------c---
Q 048729 89 GAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHT--YLLLEAL--------------------------------S--- 131 (330)
Q Consensus 89 G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~--~~~~~~~--------------------------------~--- 131 (330)
|++++|+++.++++++.++++..++++++++.... ..+.... .
T Consensus 135 Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (580)
T 3etc_A 135 GAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIFE 214 (580)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCCTTCEEHHHHHHHSCSCCC
T ss_pred CEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccccccccHHHHHhhCCcccc
Confidence 99999999999999999999999999999876533 2111100 0
Q ss_pred -c-----Cc-----------------------------------------------------------------------
Q 048729 132 -L-----FP----------------------------------------------------------------------- 134 (330)
Q Consensus 132 -~-----~~----------------------------------------------------------------------- 134 (330)
. ..
T Consensus 215 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~ 294 (580)
T 3etc_A 215 RPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCA 294 (580)
T ss_dssp CCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCE
T ss_pred cCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcE
Confidence 0 00
Q ss_pred --------------------------------------------------------------------------------
Q 048729 135 -------------------------------------------------------------------------------- 134 (330)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (330)
T Consensus 295 ~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG 374 (580)
T 3etc_A 295 VFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFG 374 (580)
T ss_dssp EEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC---CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEEC
T ss_pred EEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcccccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccc
Confidence
Q ss_pred ------------hHHHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEec-----CcccccccCCchhhhcccc
Q 048729 135 ------------QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRG-----GCVTVGYFKDKEATRRCIS 197 (330)
Q Consensus 135 ------------~~~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~-----~~~~~gy~~~~~~~~~~~~ 197 (330)
.......++|.|++|. +++|+|+ +|++++.+ +.|||+++| +.++.||+++|+.+.+.|.
T Consensus 375 ~TE~~~~~~~~~~~~~~~~~~G~p~~~~-~v~ivd~-~g~~~~~g--~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~ 450 (580)
T 3etc_A 375 QTETVVTIATFPWMEPKPGSIGKPTPGY-KIELMDR-DGRLCEVG--EEGEIVINTMEGKPVGLFVHYGKDPERTEETWH 450 (580)
T ss_dssp CTTSSCCEECCTTSCCCTTCCBEECTTC-EEEEECT-TSCBCCTT--CCEEEEEECTTCCCTTCCCEETTCHHHHHHHEE
T ss_pred cccccceeecCCCCCCCCCccccCCCCC-EEEEECC-CCCCCCCC--CceEEEEecCCCCCCeeeccccCCHhHHHhhcC
Confidence 0111234577788886 8999998 89999998 889999997 7899999999999999998
Q ss_pred CCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCccc
Q 048729 198 DNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLEL 277 (330)
Q Consensus 198 ~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 277 (330)
+|||+|||+|++|+||+++|+||.||+||++|++|+|.+||++|.+||+|.+++|++.+++..++.+.++|++.++...
T Consensus 451 -~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~ 529 (580)
T 3etc_A 451 -DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTP 529 (580)
T ss_dssp -TTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCC
T ss_pred -CCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999888999999999887541
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729 278 TKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS 328 (330)
Q Consensus 278 ~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~ 328 (330)
. ....+++++.++++|++|++|+.|+++++||+|++||++|++|++++++
T Consensus 530 ~-~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 530 S-DSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp C-HHHHHHHHHHHHHHSCGGGCCSEEEEECC--------------------
T ss_pred C-HHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhhc
Confidence 1 0234789999999999999999999999999999999999999998764
No 9
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=3.4e-53 Score=398.21 Aligned_cols=304 Identities=27% Similarity=0.385 Sum_probs=264.4
Q ss_pred CCHHHHHHHHHHhcCCCcEEEeC--CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEE
Q 048729 15 LTTLGFLERAAAAYTDCPSLVYN--NTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAIL 92 (330)
Q Consensus 15 ~~~~~~l~~~~~~~p~~~a~~~~--~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~ 92 (330)
+|+.++|.++++++||++|+.+. ++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 81 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence 57999999999999999999987 8899999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCCcEEEE--cccchHHH-HHH--------------------hccC--c-------------
Q 048729 93 NNINTRLDAHTLSVLLQHSESKLVFV--DHLHTYLL-LEA--------------------LSLF--P------------- 134 (330)
Q Consensus 93 ~~l~~~~~~~~l~~~l~~~~~~~i~~--~~~~~~~~-~~~--------------------~~~~--~------------- 134 (330)
+|+++.++++++.++++..+++++++ +......+ ... .... .
T Consensus 82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~T 161 (504)
T 1t5h_X 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYT 161 (504)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCCCCEEEEGGGTEETTEECCCSCCCCCCCCCTTSEEEEEEC
T ss_pred EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccccceeEEecchhhcCcccccCCccCCCCCCCCCeEEEEeC
Confidence 99999999999999999999999999 65544333 110 0000 0
Q ss_pred --------------------------------------------------------------------------------
Q 048729 135 -------------------------------------------------------------------------------- 134 (330)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (330)
T Consensus 162 SGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~ 241 (504)
T 1t5h_X 162 SGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQ 241 (504)
T ss_dssp CC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHH
T ss_pred CCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHH
Confidence
Q ss_pred ----------------------------------------------hHHHH---------------------------hh
Q 048729 135 ----------------------------------------------QRARL---------------------------KA 141 (330)
Q Consensus 135 ----------------------------------------------~~~~~---------------------------~~ 141 (330)
....+ ..
T Consensus 242 ~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~ 321 (504)
T 1t5h_X 242 QEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTG 321 (504)
T ss_dssp HHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEESCSSS
T ss_pred HhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccccccccccCCCCC
Confidence 00000 11
Q ss_pred ccCCcccCceeEEEeCCCCC---cccCCCCceecEEEEe-cCcccccccCCchhhhccccCCCeEEeCceEEEecCceEE
Q 048729 142 RQGVKTVGLAEVDVVNPETG---ESVKRDGVSLGEVVLR-GGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVE 217 (330)
Q Consensus 142 ~~G~~~~g~te~~i~d~~~g---~~~~~~~~~~Gel~v~-~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~ 217 (330)
+.|.|.++. +++++|+ ++ ++++.+ +.|||+++ |+.++.||+++|+.+.+.|. +|||+|||+|++|+||+++
T Consensus 322 ~~g~p~~~~-~~~i~~~-~~~~~~~~~~g--~~GEl~v~gg~~~~~GY~~~~~~t~~~f~-~g~~~TGDlg~~~~dG~l~ 396 (504)
T 1t5h_X 322 TEMAPGFFS-EVRIVRI-GGGVDEIVANG--EEGELIVAASDSAFVGYLNQPQATAEKLQ-DGWYRTSDVAVWTPEGTVR 396 (504)
T ss_dssp SEEBCCTTC-CEEEECT-TSCTTCBCCTT--CCEEEEEECCTTSCCCBTTCHHHHHHHEE-TTEEEEEEEEEECTTSCEE
T ss_pred ccccCCCCC-ceeEEec-cCCCCCcCCCC--CcceEEEeCCceeeceecCCchhhhhhhc-CCccccCcEEEECCCceEE
Confidence 223333443 4566666 45 788887 88999999 99999999999999999996 8999999999999999999
Q ss_pred EEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHh-cCCC
Q 048729 218 IKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRA-RLPR 296 (330)
Q Consensus 218 ~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~-~l~~ 296 (330)
++||.||+||++|++|+|.+||+.|.+||+|.+++|++.+++..++.++++|++.++.. .+.+++.+.+++ +|+.
T Consensus 397 ~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~----~~~~~l~~~~~~~~L~~ 472 (504)
T 1t5h_X 397 ILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGET----LSADALDTFCRSSELAD 472 (504)
T ss_dssp EEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCC----CCHHHHHHHHHTSSCCG
T ss_pred EeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcC----cCHHHHHHHHhhccCcc
Confidence 99999999999999999999999999999999999999999888899999999887754 678999999998 9999
Q ss_pred CCCCceEEEccCCCCCCCCcccHHHHHHHhh
Q 048729 297 YMVPRKVVFSEELPKTSTGKIQKYLLREFAK 327 (330)
Q Consensus 297 ~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~ 327 (330)
|++|+.++++++||+|++||++|++|++++.
T Consensus 473 ~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 473 FKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp GGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred cccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 9999999999999999999999999999875
No 10
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=5.7e-54 Score=406.64 Aligned_cols=312 Identities=36% Similarity=0.534 Sum_probs=239.4
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCcEEEe----CCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHh
Q 048729 10 ANSTPLTTLGFLERAAAAYTDCPSLVY----NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGV 85 (330)
Q Consensus 10 ~~~~~~~~~~~l~~~~~~~p~~~a~~~----~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~ 85 (330)
....+.|+.++|.+.++.+||++|+++ .++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus 13 ~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 92 (541)
T 1v25_A 13 MMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAV 92 (541)
T ss_dssp BCCCCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 334567999999999999999999994 5688999999999999999999999999999999999999999999999
Q ss_pred hhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhc---------------------------------c
Q 048729 86 PMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALS---------------------------------L 132 (330)
Q Consensus 86 ~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~---------------------------------~ 132 (330)
+++|++++|+++.++.+++.++++..+++++++++.....+..... .
T Consensus 93 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (541)
T 1v25_A 93 PGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVR 172 (541)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHCCSCCCCCC
T ss_pred HhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCcccccHHHHhhccCCccc
Confidence 9999999999999999999999999999999998765443322100 0
Q ss_pred Cc------------------------------------------------------------------------------
Q 048729 133 FP------------------------------------------------------------------------------ 134 (330)
Q Consensus 133 ~~------------------------------------------------------------------------------ 134 (330)
..
T Consensus 173 ~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~ 252 (541)
T 1v25_A 173 VPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGP 252 (541)
T ss_dssp CCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTT
T ss_pred CCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCC
Confidence 00
Q ss_pred --------------------------------------------------------------------------------
Q 048729 135 -------------------------------------------------------------------------------- 134 (330)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (330)
T Consensus 253 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~~~~~YG~TE~~~~ 332 (541)
T 1v25_A 253 RLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPV 332 (541)
T ss_dssp CCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGSSE
T ss_pred CCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHHHHhCCceeecccccccccc
Confidence
Q ss_pred ------h----------HHHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccC
Q 048729 135 ------Q----------RARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISD 198 (330)
Q Consensus 135 ------~----------~~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~ 198 (330)
. ......++|.|++|. +++|+|+ +|++++.++++.|||+++|++++.|||++|+.+.+.|..
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i~d~-~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~ 410 (541)
T 1v25_A 333 VVQNFVKSHLESLSEEEKLTLKAKTGLPIPLV-RLRVADE-EGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTP 410 (541)
T ss_dssp EEECCCCGGGTTSCHHHHHHHHTSCBEECTTC-EEEEECT-TSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCT
T ss_pred eecccccccccccCccccccccCCCCCcCCCc-EEEEECC-CCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccC
Confidence 0 012346778888996 9999998 889888543368999999999999999999999999987
Q ss_pred CCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccC
Q 048729 199 NGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELT 278 (330)
Q Consensus 199 ~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 278 (330)
+|||+|||+|++|++|+++++||.||+||++|++|+|.+||+.|.+||+|.+++|++.+++..++.++++|++. +..
T Consensus 411 ~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~-~~~-- 487 (541)
T 1v25_A 411 DGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR-GEK-- 487 (541)
T ss_dssp TSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC---------
T ss_pred CCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEEC-CCC--
Confidence 99999999999999999999999999999999999999999999999999999999999988888999998876 322
Q ss_pred CCCCHHHHHHHHHh-cCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729 279 KKPTEKEIIEYCRA-RLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS 328 (330)
Q Consensus 279 ~~~~~~~l~~~l~~-~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~ 328 (330)
.+.+++.+.+++ +|+.|++|+.++++++||+|++||++|++|++.+.+
T Consensus 488 --~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 536 (541)
T 1v25_A 488 --PTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKN 536 (541)
T ss_dssp ---------------CCCTTTSCSBC--------------CCTTHHHHSTT
T ss_pred --CCHHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHH
Confidence 456789999999 899999999999999999999999999999998865
No 11
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=1e-53 Score=406.36 Aligned_cols=303 Identities=20% Similarity=0.286 Sum_probs=270.5
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEe
Q 048729 14 PLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILN 93 (330)
Q Consensus 14 ~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~ 93 (330)
..++.++|.++++.+||++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus 38 ~~~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v 117 (563)
T 1amu_A 38 DKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYV 117 (563)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEE
T ss_pred CCcHHHHHHHHHHHCCCCeEEEeCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHh----------------cc-------Cc----------------
Q 048729 94 NINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEAL----------------SL-------FP---------------- 134 (330)
Q Consensus 94 ~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~----------------~~-------~~---------------- 134 (330)
|+++.++.+++.++++..+++++++++.....+.... .. ..
T Consensus 118 pl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~P 197 (563)
T 1amu_A 118 PIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIKIREGTNLHVPSKSTDLAYVIYTSGTTGNP 197 (563)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCCSTTTTSCCSCCCCCCCTTSEEEEEEEC-----C
T ss_pred EeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccccCceeeecchhhccccCccCCCCCCCCCeEEEEECCCCCCCC
Confidence 9999999999999999999999999876543322110 00 00
Q ss_pred --------------------------------------------------------------------------------
Q 048729 135 -------------------------------------------------------------------------------- 134 (330)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (330)
T Consensus 198 KgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~ 277 (563)
T 1amu_A 198 KGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVI 277 (563)
T ss_dssp EEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEE
T ss_pred cEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEE
Confidence
Q ss_pred -------------------------------------------------h-------------HHHHhhccCCcccCcee
Q 048729 135 -------------------------------------------------Q-------------RARLKARQGVKTVGLAE 152 (330)
Q Consensus 135 -------------------------------------------------~-------------~~~~~~~~G~~~~g~te 152 (330)
+ ......++|.|++|. +
T Consensus 278 ~~~P~~~~~l~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~-~ 356 (563)
T 1amu_A 278 TLPPTYVVHLDPERILSIQTLITAGSATSPSLVNKWKEKVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNT-Q 356 (563)
T ss_dssp EECHHHHTTSCTTTCCSCSEEEEESSCCCHHHHHHHTTTSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTE-E
T ss_pred EeCHHHHHHHHhcccccccEEEEEEecCCHHHHHHHHhCCeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCC-E
Confidence 0 001223578888886 9
Q ss_pred EEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccC------CCeEEeCceEEEecCceEEEEecCCCeE
Q 048729 153 VDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISD------NGWFYTGDIGVMHADGYVEIKDRSKDVI 226 (330)
Q Consensus 153 ~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~------~g~~~TGD~~~~~~~G~l~~~GR~dd~i 226 (330)
++|+|+ +|++++.+ +.|||+++|++++.|||++|+.+.+.|.. ++||+|||+|++|+||+++++||.||+|
T Consensus 357 v~i~d~-~~~~~~~g--~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~I 433 (563)
T 1amu_A 357 IYIVDE-NLQLKSVG--EAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQV 433 (563)
T ss_dssp EEEECT-TSCBCCTT--CEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEE
T ss_pred EEEECC-CcCCCCCC--CcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEE
Confidence 999998 89999998 88999999999999999999999888742 3599999999999999999999999999
Q ss_pred EeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEc
Q 048729 227 ISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFS 306 (330)
Q Consensus 227 k~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v 306 (330)
|++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++++.... .+.+++++.++++|+.|++|+.|+++
T Consensus 434 k~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~------~~~~~l~~~l~~~L~~y~~P~~i~~v 507 (563)
T 1amu_A 434 KIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKH------IPLEQLRQFSSEELPTYMIPSYFIQL 507 (563)
T ss_dssp EETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSC------CCHHHHHHHHHHHSCGGGSCSEEEEC
T ss_pred EECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCC------CCHHHHHHHHHhhCchhhCCcEEEEe
Confidence 999999999999999999999999999999988778889999987643 56799999999999999999999999
Q ss_pred cCCCCCCCCcccHHHHHHHh
Q 048729 307 EELPKTSTGKIQKYLLREFA 326 (330)
Q Consensus 307 ~~lP~t~~GKv~r~~l~~~~ 326 (330)
++||+|++||++|++|++..
T Consensus 508 ~~lP~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 508 DKMPLTSNGKIDRKQLPEPD 527 (563)
T ss_dssp SSCCBCTTSSBCGGGSCCCC
T ss_pred cccCCCCCcChhHHhcCCcc
Confidence 99999999999999998754
No 12
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=4.1e-54 Score=406.12 Aligned_cols=312 Identities=19% Similarity=0.243 Sum_probs=262.9
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEE
Q 048729 13 TPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAIL 92 (330)
Q Consensus 13 ~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~ 92 (330)
...|+.++|.+.++.+|+++|+.+.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~ 81 (521)
T 3l8c_A 2 SLKDMIDSIEQFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAY 81 (521)
T ss_dssp CCCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCE
T ss_pred cHHHHHHHHHHHHHHCCCCcceecCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCCcEEEEcccchHH-----------HHHH-hccCc--------------------------
Q 048729 93 NNINTRLDAHTLSVLLQHSESKLVFVDHLHTYL-----------LLEA-LSLFP-------------------------- 134 (330)
Q Consensus 93 ~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~-----------~~~~-~~~~~-------------------------- 134 (330)
+|+++.++++++.++++..++++++++...... +... .....
T Consensus 82 vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK 161 (521)
T 3l8c_A 82 IPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGISLVSLSEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPK 161 (521)
T ss_dssp EEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTTSEEEEHHHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCC
T ss_pred EecCccccHHHHHHHHHhCCCCEEEecCccccccccCcccchhhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCC
Confidence 999999999999999999999999987643211 1100 00000
Q ss_pred --------------------------------------------------------------------------------
Q 048729 135 -------------------------------------------------------------------------------- 134 (330)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (330)
T Consensus 162 gV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~ 241 (521)
T 3l8c_A 162 GVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGI 241 (521)
T ss_dssp EEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSE
T ss_pred EEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcE
Confidence
Q ss_pred -----------------------------------------------------------------------hH---HHHh
Q 048729 135 -----------------------------------------------------------------------QR---ARLK 140 (330)
Q Consensus 135 -----------------------------------------------------------------------~~---~~~~ 140 (330)
.. ....
T Consensus 242 ~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~ 321 (521)
T 3l8c_A 242 WTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTR 321 (521)
T ss_dssp EEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSS
T ss_pred EEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCc
Confidence 00 0112
Q ss_pred hccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccc---cCCCeEEeCceEEEecCceEE
Q 048729 141 ARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCI---SDNGWFYTGDIGVMHADGYVE 217 (330)
Q Consensus 141 ~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~~g~~~TGD~~~~~~~G~l~ 217 (330)
.++|.|++|. +++|+|+ +|++++.+ +.|||+++|++++.|||++|+.+.+.| ..+|||+|||+|++|++|+++
T Consensus 322 ~~vG~p~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~ 397 (521)
T 3l8c_A 322 LPIGYPKPDS-PTYIIDE-DGKELSSG--EQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILL 397 (521)
T ss_dssp CEEEEECTTS-CEEEECT-TSCBCCTT--CCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEE
T ss_pred cccccccCCC-EEEEECC-CcCCCCCC--CceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEE
Confidence 3467777785 8899998 89999998 889999999999999999999998887 447899999999999999999
Q ss_pred EEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCC-CCceeEEEEEecCCcccCCC---CCHHHHHHHHHhc
Q 048729 218 IKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMF-WGEIPCAFVSLKRDLELTKK---PTEKEIIEYCRAR 293 (330)
Q Consensus 218 ~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~-~~~~~~~~v~~~~~~~~~~~---~~~~~l~~~l~~~ 293 (330)
+.||.||+||++|++|+|.+||+.|.++|+|.+++|++..++. .++.+++++++.++...... ...+++++.++++
T Consensus 398 ~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~ 477 (521)
T 3l8c_A 398 YGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDH 477 (521)
T ss_dssp EEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGG
T ss_pred EeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999887543 35789999998887542111 1257899999999
Q ss_pred CCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729 294 LPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS 328 (330)
Q Consensus 294 l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~ 328 (330)
|+.|++|+.|+++++||+|++||+||++|++++++
T Consensus 478 l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~ 512 (521)
T 3l8c_A 478 MMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNN 512 (521)
T ss_dssp SCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC-
T ss_pred CccccCCeEEEEecccCCCCCcCccHHHHhhhhhc
Confidence 99999999999999999999999999999999865
No 13
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=4.9e-55 Score=416.38 Aligned_cols=306 Identities=23% Similarity=0.298 Sum_probs=177.1
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEE
Q 048729 13 TPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAIL 92 (330)
Q Consensus 13 ~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~ 92 (330)
...++.++|.++++++||++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus 73 ~~~~l~~~l~~~a~~~pd~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 152 (570)
T 4gr5_A 73 AGACVHELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGY 152 (570)
T ss_dssp CSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred ccCCHHHHHHHHHHHCCCCeEEECCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEE
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHH-------------hcc-C-----c-------------------
Q 048729 93 NNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEA-------------LSL-F-----P------------------- 134 (330)
Q Consensus 93 ~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~-------------~~~-~-----~------------------- 134 (330)
+|+++.++.+++.++++..++++++++......+... ... . +
T Consensus 153 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV 232 (570)
T 4gr5_A 153 TMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTGTTTLYVEDEAASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGV 232 (570)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSCSSEEEECCC-------CCCCCCCCCTTSEEEEECCSSCCSSCCCE
T ss_pred EEcCCCChHHHHHHHHHhcCCCEEEecchhhhcccCCcceeeeccccccccccccCCCCCCCCeEEEEECCcCCCCCeEE
Confidence 9999999999999999999999999976543221100 000 0 0
Q ss_pred --------------------------------------------------------------------------------
Q 048729 135 -------------------------------------------------------------------------------- 134 (330)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (330)
T Consensus 233 ~~th~~l~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~ 312 (570)
T 4gr5_A 233 MSPHRALTGTYLGQDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSAS 312 (570)
T ss_dssp EEEHHHHHHHHSSCCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHH
T ss_pred EEecHHHHHHHHhhhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHH
Confidence
Q ss_pred --------------------------------------------------h--------------HHHHhhccCCcccCc
Q 048729 135 --------------------------------------------------Q--------------RARLKARQGVKTVGL 150 (330)
Q Consensus 135 --------------------------------------------------~--------------~~~~~~~~G~~~~g~ 150 (330)
+ ......++|.|++|.
T Consensus 313 ~~~~l~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~ 392 (570)
T 4gr5_A 313 LFNFLVDEVPEAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGK 392 (570)
T ss_dssp HHHHHHHHCGGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTE
T ss_pred HHHHHHhhchhhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCccccceeeCCC
Confidence 0 000112367777885
Q ss_pred eeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccC--------CCeEEeCceEEEecCceEEEEecC
Q 048729 151 AEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISD--------NGWFYTGDIGVMHADGYVEIKDRS 222 (330)
Q Consensus 151 te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~--------~g~~~TGD~~~~~~~G~l~~~GR~ 222 (330)
+++|+|+ ++++++.+ +.|||+++|++++.|||++|+.+.+.|.. +|||+|||+|++|+||+++|+||+
T Consensus 393 -~v~i~d~-~~~~~~~G--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~ 468 (570)
T 4gr5_A 393 -RAYVLDD-DLKPAANG--ALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRA 468 (570)
T ss_dssp -EEEEECT-TSCBCCTT--CEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC-
T ss_pred -EEEEECC-CCCCCCCC--CcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEccc
Confidence 8999998 89999998 89999999999999999999999888743 379999999999999999999999
Q ss_pred CCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCce
Q 048729 223 KDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRK 302 (330)
Q Consensus 223 dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~ 302 (330)
||+||++|++|+|.+||+.|.+||+|.+++|++.+++..++.++++++....... .+.++++++++++|+.|++|..
T Consensus 469 ~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~---~~~~~l~~~l~~~l~~~~~P~~ 545 (570)
T 4gr5_A 469 DDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAP---PDAAELRRHVAEALPAYMVPVE 545 (570)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCC---cCHHHHHHHHHhhCccccCCcE
Confidence 9999999999999999999999999999999999888788889999887654321 5678999999999999999999
Q ss_pred EEEccCCCCCCCCcccHHHHHHH
Q 048729 303 VVFSEELPKTSTGKIQKYLLREF 325 (330)
Q Consensus 303 ~~~v~~lP~t~~GKv~r~~l~~~ 325 (330)
++++++||+|++||++|++|++.
T Consensus 546 i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 546 CVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp -----------------------
T ss_pred EEEcccCCCCCCcCcchHhhhcc
Confidence 99999999999999999999875
No 14
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=4.5e-54 Score=404.95 Aligned_cols=311 Identities=20% Similarity=0.216 Sum_probs=266.7
Q ss_pred CCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEee
Q 048729 15 LTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNN 94 (330)
Q Consensus 15 ~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~ 94 (330)
+|+.++|.++++++||++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vp 80 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIP 80 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEE
T ss_pred CcHHHHHHHHHHHCCCceEEEeCCceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCCcEEEEcccch-----------HHHHHH----hccC--------c-----------------
Q 048729 95 INTRLDAHTLSVLLQHSESKLVFVDHLHT-----------YLLLEA----LSLF--------P----------------- 134 (330)
Q Consensus 95 l~~~~~~~~l~~~l~~~~~~~i~~~~~~~-----------~~~~~~----~~~~--------~----------------- 134 (330)
+++.++.+++.++++..++++++++.... ..+... .... .
T Consensus 81 l~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK 160 (512)
T 3fce_A 81 VDLSIPADRVQRIAENSGAKLLLSATAVTVTDLPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPK 160 (512)
T ss_dssp EETTSCHHHHHHHHHHSCCCEEEESSCCCSSCCSSEEEETHHHHHHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CE
T ss_pred eCCCCcHHHHHHHHHhcCCCEEEecCcccccccccceechhhhhhhcccccccCCCccccCCCCCeEEEEECCCCCCCCc
Confidence 99999999999999999999999874211 011100 0000 0
Q ss_pred --------------------------------------------------------------------------------
Q 048729 135 -------------------------------------------------------------------------------- 134 (330)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (330)
T Consensus 161 gv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~ 240 (512)
T 3fce_A 161 GVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWT 240 (512)
T ss_dssp EEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEE
T ss_pred eEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEE
Confidence
Q ss_pred ------------------------------------h------------------------------------HHHHhhc
Q 048729 135 ------------------------------------Q------------------------------------RARLKAR 142 (330)
Q Consensus 135 ------------------------------------~------------------------------------~~~~~~~ 142 (330)
. ......+
T Consensus 241 ~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~ 320 (512)
T 3fce_A 241 STPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLP 320 (512)
T ss_dssp ECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCC
T ss_pred ecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccCCCc
Confidence 0 0001223
Q ss_pred cCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccc---cCCCeEEeCceEEEecCceEEEE
Q 048729 143 QGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCI---SDNGWFYTGDIGVMHADGYVEIK 219 (330)
Q Consensus 143 ~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~~g~~~TGD~~~~~~~G~l~~~ 219 (330)
+|.++++. ++.|+|+ +|++++.+ +.|||+++|++++.|||++|+.+.+.| ..+|||+|||+|++ +||++++.
T Consensus 321 ~G~~~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~ 395 (512)
T 3fce_A 321 VGYCKSDC-RLLIMKE-DGTIAPDG--EKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYN 395 (512)
T ss_dssp CEEECTTC-EEEEECS-SSCBCCTT--SCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEE
T ss_pred cccccCCc-EEEEECC-CCCCCCCC--CeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEe
Confidence 55566665 7788887 89999998 889999999999999999999998887 34679999999999 79999999
Q ss_pred ecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCC
Q 048729 220 DRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMV 299 (330)
Q Consensus 220 GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 299 (330)
||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++++..++.........+++++.++++|+.|++
T Consensus 396 GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~ 475 (512)
T 3fce_A 396 GRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMI 475 (512)
T ss_dssp EEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHHHHHHHHHHHHHTTSCGGGS
T ss_pred cccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccchhhhHHHHHHHHHhhCchhcC
Confidence 99999999999999999999999999999999999998887778899999887764311101246799999999999999
Q ss_pred CceEEEccCCCCCCCCcccHHHHHHHhhhcC
Q 048729 300 PRKVVFSEELPKTSTGKIQKYLLREFAKSVS 330 (330)
Q Consensus 300 p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~~ 330 (330)
|+.++++++||+|++||++|++|++.+++.|
T Consensus 476 P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~ 506 (512)
T 3fce_A 476 PRKFMYQSSIPMTPNGKVDRKKLLSEVTALE 506 (512)
T ss_dssp CSEEEECSCCCBCTTSSBCHHHHHHHHHC--
T ss_pred CeEEEEecccCCCCCcChHHHHHHhhhhhcc
Confidence 9999999999999999999999999998754
No 15
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=9.3e-53 Score=404.15 Aligned_cols=306 Identities=25% Similarity=0.398 Sum_probs=270.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcE
Q 048729 12 STPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAI 91 (330)
Q Consensus 12 ~~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~ 91 (330)
....|+.++|.++++ ||++|+++.++++||+||.++++++|++|.+.|+++||+|++++++++++++++|||+++|++
T Consensus 24 ~~~~~l~~~~~~~a~--pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~ 101 (617)
T 3rg2_A 24 WQDLPLTDILTRHAA--SDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVA 101 (617)
T ss_dssp CCCCCTTHHHHTTTT--CCSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred CCcCCHHHHHHHhhC--CCCeEEecCCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeE
Confidence 456789999999887 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCHHHHHHHHHhcCCcEEEEcccch--------HHHHHH---------------------hc----c------
Q 048729 92 LNNINTRLDAHTLSVLLQHSESKLVFVDHLHT--------YLLLEA---------------------LS----L------ 132 (330)
Q Consensus 92 ~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~--------~~~~~~---------------------~~----~------ 132 (330)
++|+++.++.+++.++++..++++++++.... ..+... .. .
T Consensus 102 ~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (617)
T 3rg2_A 102 PVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQDAINHPAEDFTATPS 181 (617)
T ss_dssp EEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCSTTBHHHHHHSCCSSCCCCCC
T ss_pred EccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccccchhhhhcccccccCCCCC
Confidence 99999999999999999999999999986543 110000 00 0
Q ss_pred ----Cc--------------------------------------------------------------------------
Q 048729 133 ----FP-------------------------------------------------------------------------- 134 (330)
Q Consensus 133 ----~~-------------------------------------------------------------------------- 134 (330)
..
T Consensus 182 ~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~~ 261 (617)
T 3rg2_A 182 PADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADP 261 (617)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSSC
T ss_pred CCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCCC
Confidence 00
Q ss_pred --------------------------------------------------------------------------------
Q 048729 135 -------------------------------------------------------------------------------- 134 (330)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (330)
T Consensus 262 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~ 341 (617)
T 3rg2_A 262 SATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLV 341 (617)
T ss_dssp CHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEE
T ss_pred CHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCccee
Confidence
Q ss_pred -------hHHHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCce
Q 048729 135 -------QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDI 207 (330)
Q Consensus 135 -------~~~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~ 207 (330)
.......+.|.|+.+.+++.|+|+ +|++++.+ +.|||+++|++++.||+++|+.+.+.|..++||+|||+
T Consensus 342 ~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~-~~~~~p~G--~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl 418 (617)
T 3rg2_A 342 NYTRLDDSAEKIIHTQGYPMCPDDEVWVADA-EGNPLPQG--EVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDL 418 (617)
T ss_dssp EECCTTSCHHHHHHCCCEESCTTCEEEEECT-TSCBCCTT--CCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEE
T ss_pred ecccCCCcccccccCCCccCCCCceEEEECC-CCCCCCCC--CceEEEecCccccchhcCChhhhhhccCCCCceecCce
Confidence 111223455666533347888887 89999999 88999999999999999999999999988999999999
Q ss_pred EEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHH
Q 048729 208 GVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEII 287 (330)
Q Consensus 208 ~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~ 287 (330)
|++++||.++|+||.||+||++|++|+|.+||+.|.+||+|.+++|++..++..++.++++++..+. .+..+++
T Consensus 419 ~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~------~~~~~l~ 492 (617)
T 3rg2_A 419 ISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEP------LRAVQVR 492 (617)
T ss_dssp EEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSC------CCHHHHH
T ss_pred EEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCC------CCHHHHH
Confidence 9999999999999999999999999999999999999999999999999888778889999988764 5688999
Q ss_pred HHHHh-cCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729 288 EYCRA-RLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS 328 (330)
Q Consensus 288 ~~l~~-~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~ 328 (330)
+.+++ +|+.|++|..++++++||+|++||+||++|++++.+
T Consensus 493 ~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~ 534 (617)
T 3rg2_A 493 RFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLAS 534 (617)
T ss_dssp HHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHH
T ss_pred HHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhc
Confidence 99998 699999999999999999999999999999998753
No 16
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=5.2e-55 Score=414.63 Aligned_cols=314 Identities=26% Similarity=0.355 Sum_probs=178.9
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCcEEE---e--CCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Q 048729 8 NSANSTPLTTLGFLERAAAAYTDCPSLV---Y--NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQ 82 (330)
Q Consensus 8 ~~~~~~~~~~~~~l~~~~~~~p~~~a~~---~--~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~ 82 (330)
...+....|+.++|.+.++++|+++|++ + .++++||+||.++++++|++|.+.|+++||+|+++++|++++++++
T Consensus 13 ~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 92 (550)
T 3rix_A 13 PFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPV 92 (550)
T ss_dssp CSSCCCCSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHH
T ss_pred CCCCcccCCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHH
Confidence 4556667899999999999999999976 4 4688999999999999999999999999999999999999999999
Q ss_pred HHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhc-------------------------------
Q 048729 83 FGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALS------------------------------- 131 (330)
Q Consensus 83 la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~------------------------------- 131 (330)
|||+++|++++|+++.++.+++.++++..++++++++......+.....
T Consensus 93 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (550)
T 3rix_A 93 LGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHL 172 (550)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBCBHHHHHHHHC
T ss_pred HHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccccCcccHHHHhhccc
Confidence 9999999999999999999999999999999999998765543322100
Q ss_pred ------------------cCc-----------------------------------------------------------
Q 048729 132 ------------------LFP----------------------------------------------------------- 134 (330)
Q Consensus 132 ------------------~~~----------------------------------------------------------- 134 (330)
...
T Consensus 173 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~ 252 (550)
T 3rix_A 173 PPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTT 252 (550)
T ss_dssp CTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHH
T ss_pred cccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHH
Confidence 000
Q ss_pred ----------------------------------------------------------------------hH--------
Q 048729 135 ----------------------------------------------------------------------QR-------- 136 (330)
Q Consensus 135 ----------------------------------------------------------------------~~-------- 136 (330)
..
T Consensus 253 ~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~ 332 (550)
T 3rix_A 253 LGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFH 332 (550)
T ss_dssp HHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTT
T ss_pred HHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHHHHHHHHHHcC
Confidence 00
Q ss_pred -----------------------HHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhh
Q 048729 137 -----------------------ARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATR 193 (330)
Q Consensus 137 -----------------------~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~ 193 (330)
.....++|.|++|. +++|+|+++|++++.+ +.|||+++|++++.|||++|+.+.
T Consensus 333 ~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~~~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~ 409 (550)
T 3rix_A 333 LPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFF-EAKVVDLDTGKTLGVN--QRGELCVRGPMIMSGYVNNPEATN 409 (550)
T ss_dssp CSCCEEEEECGGGSSEEEECCTTCCCTTEEEEECTTC-EEEEECTTTCCBCCTT--CCEEEEEESTTSCSEETTCHHHHH
T ss_pred CCccccccCcCccccceecCCCCCCCCCCcccccCCc-EEEEEeCCCCcCCCCC--CCeEEEEeCCCcchhhcCChhhhh
Confidence 01123345566664 7888897689999998 889999999999999999999999
Q ss_pred ccccCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecC
Q 048729 194 RCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKR 273 (330)
Q Consensus 194 ~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 273 (330)
..|..+|||+|||+|++|++|+++++||.||+||++|++|+|.+||+.|.+||+|.+++|++.+++..++.++++|++.+
T Consensus 410 ~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~ 489 (550)
T 3rix_A 410 ALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEH 489 (550)
T ss_dssp HHBCTTSCEEEEEEEEECTTCCEEEC------------------------------------------------------
T ss_pred hhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecC
Confidence 99977999999999999999999999999999999999999999999999999999999999999888899999999887
Q ss_pred CcccCCCCCHHHHHHHHHhcCCCCCCCc-eEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729 274 DLELTKKPTEKEIIEYCRARLPRYMVPR-KVVFSEELPKTSTGKIQKYLLREFAKS 328 (330)
Q Consensus 274 ~~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~~v~~lP~t~~GKv~r~~l~~~~~~ 328 (330)
+.. .+.+++.++++++++.+..|. .++++++||+|++||++|++|++++.+
T Consensus 490 ~~~----~~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 541 (550)
T 3rix_A 490 GKT----MTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIK 541 (550)
T ss_dssp --------------------------------------------------------
T ss_pred CCC----CCHHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHh
Confidence 765 667899999999999987554 699999999999999999999998854
No 17
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=5e-52 Score=393.77 Aligned_cols=306 Identities=25% Similarity=0.325 Sum_probs=271.0
Q ss_pred CCHHH-HHHHHHHhcCCCcEEEe--CCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcE
Q 048729 15 LTTLG-FLERAAAAYTDCPSLVY--NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAI 91 (330)
Q Consensus 15 ~~~~~-~l~~~~~~~p~~~a~~~--~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~ 91 (330)
.|+.+ +|.+.++++ |++|+++ .++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 25 ~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav 103 (548)
T 2d1s_A 25 AGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVG 103 (548)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCE
T ss_pred CcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCE
Confidence 47899 899999999 9999998 5789999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHH-------------------------------H-----h---c-
Q 048729 92 LNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLE-------------------------------A-----L---S- 131 (330)
Q Consensus 92 ~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~-------------------------------~-----~---~- 131 (330)
++|+++.++.+++.++++..+++++++++.....+.. . . .
T Consensus 104 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (548)
T 2d1s_A 104 VAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSF 183 (548)
T ss_dssp EEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSCBTTBCBHHHHHHHTSCTTCCGGGC
T ss_pred EeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcccccccccHHHHHhcCccccCCcccc
Confidence 9999999999999999999999999997654322110 0 0 0
Q ss_pred c-----C-c-----------------------------------------------------------------------
Q 048729 132 L-----F-P----------------------------------------------------------------------- 134 (330)
Q Consensus 132 ~-----~-~----------------------------------------------------------------------- 134 (330)
. . .
T Consensus 184 ~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~G~~ 263 (548)
T 2d1s_A 184 KTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFR 263 (548)
T ss_dssp CCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHTTCE
T ss_pred cccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHhcCcE
Confidence 0 1 1
Q ss_pred --------------------------------------------------------------------------------
Q 048729 135 -------------------------------------------------------------------------------- 134 (330)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (330)
T Consensus 264 ~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG 343 (548)
T 2d1s_A 264 VVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYG 343 (548)
T ss_dssp EEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEE
T ss_pred EEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccc
Confidence
Q ss_pred ------------hHHHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeE
Q 048729 135 ------------QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWF 202 (330)
Q Consensus 135 ------------~~~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~ 202 (330)
.......++|.|++|. +++|+|+++|++++.+ +.|||+++|++++.|||++|+.+.+.|..+|||
T Consensus 344 ~TE~~~~~~~~~~~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~ 420 (548)
T 2d1s_A 344 LTETTSAIIITPEGDDKPGASGKVVPLF-KAKVIDLDTKKSLGPN--RRGEVCVKGPMLMKGYVNNPEATKELIDEEGWL 420 (548)
T ss_dssp CGGGSSEEEECCTTCCCTTCCBEECTTC-EEEEECTTTCCBCCTT--CCEEEEEESTTSCSEETTCHHHHHHHBCTTSCE
T ss_pred cccccceeeecCcccCCCCCCCccCCCc-eEEEEeCCcCccCCCC--CCeEEEECCHHHhhhhcCChHHhhhcccCCcEE
Confidence 0001123456666675 7888886589999988 889999999999999999999999999779999
Q ss_pred EeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCC
Q 048729 203 YTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPT 282 (330)
Q Consensus 203 ~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 282 (330)
+|||+|++|++|+++++||.||+||++|++|+|.+||++|.+||+|.+++|++.+++..++.++++|++.++.. .+
T Consensus 421 ~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~----~~ 496 (548)
T 2d1s_A 421 HTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKN----MT 496 (548)
T ss_dssp EEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC----CC
T ss_pred EccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCC----CC
Confidence 99999999999999999999999999999999999999999999999999999998888889999999887654 67
Q ss_pred HHHHHHHHHhcCCCCCCCc-eEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729 283 EKEIIEYCRARLPRYMVPR-KVVFSEELPKTSTGKIQKYLLREFAKS 328 (330)
Q Consensus 283 ~~~l~~~l~~~l~~~~~p~-~~~~v~~lP~t~~GKv~r~~l~~~~~~ 328 (330)
.+++++.++++|+.|++|. .++++++||+|++||++|++|++++.+
T Consensus 497 ~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 543 (548)
T 2d1s_A 497 EKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKK 543 (548)
T ss_dssp HHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHS
T ss_pred HHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhh
Confidence 8999999999999999999 999999999999999999999999865
No 18
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=1.2e-52 Score=394.99 Aligned_cols=309 Identities=19% Similarity=0.236 Sum_probs=264.9
Q ss_pred CCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEe
Q 048729 15 LTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSS-VGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILN 93 (330)
Q Consensus 15 ~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~-~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~ 93 (330)
+|+.++|.++++.+||++|+++.++++||+||.++++++|++|.+ .|.++||+|+++++|++++++++|||+++|++++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 80 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYI 80 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEE
T ss_pred CcHHHHHHHHHHHCCCCeEEEcCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEE
Confidence 589999999999999999999999999999999999999999986 5888999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCCcEEEEcccchH-------------HHHHHhcc-----------Cc---------------
Q 048729 94 NINTRLDAHTLSVLLQHSESKLVFVDHLHTY-------------LLLEALSL-----------FP--------------- 134 (330)
Q Consensus 94 ~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~-------------~~~~~~~~-----------~~--------------- 134 (330)
|+++.++.+++.++++..++++++++..... .+...... ..
T Consensus 81 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 160 (511)
T 3e7w_A 81 PVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQQIQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKG 160 (511)
T ss_dssp EEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCCCSSCEEEHHHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEE
T ss_pred ecCCCChHHHHHHHHHhCCCCEEEecccccchhcccccceecHhhhhccccCCccccccCCCCCeEEEEECCCCCCCCCE
Confidence 9999999999999999999999998542210 11100000 00
Q ss_pred --------------------------------------------------------------------------------
Q 048729 135 -------------------------------------------------------------------------------- 134 (330)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (330)
T Consensus 161 V~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~ 240 (511)
T 3e7w_A 161 VQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTS 240 (511)
T ss_dssp EEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEE
T ss_pred EEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEe
Confidence
Q ss_pred -------------------------------------------------------------------hHH----HHhhcc
Q 048729 135 -------------------------------------------------------------------QRA----RLKARQ 143 (330)
Q Consensus 135 -------------------------------------------------------------------~~~----~~~~~~ 143 (330)
... ....++
T Consensus 241 ~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~ 320 (511)
T 3e7w_A 241 TPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPV 320 (511)
T ss_dssp CHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCC
T ss_pred cHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCC
Confidence 000 011235
Q ss_pred CCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhcccc-CCC--eEEeCceEEEecCceEEEEe
Q 048729 144 GVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCIS-DNG--WFYTGDIGVMHADGYVEIKD 220 (330)
Q Consensus 144 G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~~g--~~~TGD~~~~~~~G~l~~~G 220 (330)
|.|++|. +++|+|+ +|++++.+ +.|||+++|++++.|||++|+.+.+.|. .+| ||+|||+|++ +||+++++|
T Consensus 321 G~~~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~G 395 (511)
T 3e7w_A 321 GFAKPDM-NIFIMDE-EGQPLPEG--EKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQG 395 (511)
T ss_dssp BEECTTC-EEEEECT-TSCBCCTT--CCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEE
T ss_pred cceeCCC-EEEEECC-CCCCCCCC--CceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEc
Confidence 6667775 8889998 79999998 8899999999999999999999998883 133 7999999999 499999999
Q ss_pred cCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCC
Q 048729 221 RSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVP 300 (330)
Q Consensus 221 R~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p 300 (330)
|.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++++..++.........+++++.++++|+.|++|
T Consensus 396 R~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P 475 (511)
T 3e7w_A 396 RLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIP 475 (511)
T ss_dssp ESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGGGSC
T ss_pred cccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccchhhHHHHHHHHHHhhCchhhCC
Confidence 99999999999999999999999999999999999988878889999999887653110012478999999999999999
Q ss_pred ceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729 301 RKVVFSEELPKTSTGKIQKYLLREFAKS 328 (330)
Q Consensus 301 ~~~~~v~~lP~t~~GKv~r~~l~~~~~~ 328 (330)
+.++++++||+|++||++|++|++.+.+
T Consensus 476 ~~~~~v~~lP~t~~GKi~R~~L~~~~~~ 503 (511)
T 3e7w_A 476 RKFIYQDHIQMTANGKIDRKRIGEEVLV 503 (511)
T ss_dssp SEEEECSCCCBCTTSCBCHHHHHHHHHH
T ss_pred eeEEEeccCCCCCCcCccHHHHHhHHhh
Confidence 9999999999999999999999999875
No 19
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=9.4e-52 Score=393.42 Aligned_cols=311 Identities=27% Similarity=0.373 Sum_probs=268.2
Q ss_pred CCHHHHHHHHHHh-----cCCCcEEEeC-----CeeecHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCHHHHHHHH
Q 048729 15 LTTLGFLERAAAA-----YTDCPSLVYN-----NTTYTWSETHRRCLQVASSLSSV-GIQRGHVVSVVAPNVPSMYELQF 83 (330)
Q Consensus 15 ~~~~~~l~~~~~~-----~p~~~a~~~~-----~~~~T~~el~~~~~~~a~~L~~~-g~~~gd~V~~~~~~~~~~~~~~l 83 (330)
.++.++|.+.++. +||++|+++. ++++||+||.++++++|++|.+. |+++||+|+++++|++++++++|
T Consensus 38 ~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~l 117 (570)
T 3c5e_A 38 NFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVIL 117 (570)
T ss_dssp CHHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHH
T ss_pred cHHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHH
Confidence 3567999999999 9999999972 37899999999999999999988 99999999999999999999999
Q ss_pred HhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHh------------------------------cc-
Q 048729 84 GVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEAL------------------------------SL- 132 (330)
Q Consensus 84 a~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~------------------------------~~- 132 (330)
||+++|++++|+++.++.+++.++++..+++++++++.....+.... ..
T Consensus 118 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (570)
T 3c5e_A 118 GCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLNEASTT 197 (570)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCCTTSEEHHHHHHHSCSC
T ss_pred HHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCccccccHHHHhhccccc
Confidence 99999999999999999999999999999999999876544332100 00
Q ss_pred ---Cc---------------------------------------------------------------------------
Q 048729 133 ---FP--------------------------------------------------------------------------- 134 (330)
Q Consensus 133 ---~~--------------------------------------------------------------------------- 134 (330)
..
T Consensus 198 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~ 277 (570)
T 3c5e_A 198 HHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTF 277 (570)
T ss_dssp CCCCCCBTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHTTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEE
T ss_pred ccccCCCCCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhhhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEE
Confidence 00
Q ss_pred --------------------------------------------------------------------------------
Q 048729 135 -------------------------------------------------------------------------------- 134 (330)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (330)
T Consensus 278 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~T 357 (570)
T 3c5e_A 278 VHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQT 357 (570)
T ss_dssp EECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEET
T ss_pred EecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccccccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchh
Confidence
Q ss_pred ----------hHHHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEe-----cCcccccccCCchhhhccccCC
Q 048729 135 ----------QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLR-----GGCVTVGYFKDKEATRRCISDN 199 (330)
Q Consensus 135 ----------~~~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~-----~~~~~~gy~~~~~~~~~~~~~~ 199 (330)
.......++|.|++|. +++|+|+ +|++++.+ +.|||+++ |++++.||+++|+.+.+.|. +
T Consensus 358 E~~~~~~~~~~~~~~~~~vG~p~~~~-~v~i~d~-~g~~~~~G--~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~-~ 432 (570)
T 3c5e_A 358 ETGLTCMVSKTMKIKPGYMGTAASCY-DVQIIDD-KGNVLPPG--TEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIR-G 432 (570)
T ss_dssp TTEEEEECCTTSCCCTTCCCEECTTC-CEEEECT-TSCBCCTT--CCEEEEEECSSBCCTTCCCEETTCHHHHHHTEE-T
T ss_pred hcccceecCcccccCCCcccccCCCc-eEEEECC-CCCCCCCC--CCCeeEEeccCCCCchhhccccCChhHhhhhhc-C
Confidence 0011224566677775 7888887 79999988 88999999 99999999999999999887 8
Q ss_pred CeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCC
Q 048729 200 GWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTK 279 (330)
Q Consensus 200 g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~ 279 (330)
|||+|||+|++|+||+++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++|++.++.....
T Consensus 433 ~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~ 512 (570)
T 3c5e_A 433 DFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHD 512 (570)
T ss_dssp TEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSC
T ss_pred CccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcc
Confidence 99999999999999999999999999999999999999999999999999999999998877888999999876531100
Q ss_pred -CCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhhcC
Q 048729 280 -KPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKSVS 330 (330)
Q Consensus 280 -~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~~ 330 (330)
....+++++.++++|+.|++|+.|+++++||+|++||++|++|++.+.+.|
T Consensus 513 ~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~s 564 (570)
T 3c5e_A 513 PEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWKMS 564 (570)
T ss_dssp HHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHHHHTC--
T ss_pred hHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHHHHHhhh
Confidence 023578999999999999999999999999999999999999999886653
No 20
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1e-52 Score=403.14 Aligned_cols=301 Identities=16% Similarity=0.135 Sum_probs=249.5
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEE
Q 048729 13 TPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAIL 92 (330)
Q Consensus 13 ~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~ 92 (330)
...|+.++|.++++++||++|+++.++++||+||.++++++|++|.+.|+++||+|++++++++++++++|||+++|+++
T Consensus 25 ~~~tl~~~~~~~a~~~Pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~~ 104 (620)
T 4dg8_A 25 AHPTVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHY 104 (620)
T ss_dssp GSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCEE
T ss_pred CCCCHHHHHHHHHHhCCCCeEEEcCCCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHH---------------------hccCc-----------------
Q 048729 93 NNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEA---------------------LSLFP----------------- 134 (330)
Q Consensus 93 ~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~---------------------~~~~~----------------- 134 (330)
+|+++.++.+++.++++..++++++++.......... .....
T Consensus 105 vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~ 184 (620)
T 4dg8_A 105 LYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANGLPCVPVRHLPAAPASVARPCFAADQIAYINFSSGTTGRPKAIAC 184 (620)
T ss_dssp EECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTTSCEEEGGGCCCCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEE
T ss_pred EeeCccChHHHHHHHHHhCCCcEEEecCcccccccCCceeeeccCCcCCccccCCCCCCCCeEEEEECCCccccCeEEEE
Confidence 9999999999999999999999999643221100000 00000
Q ss_pred --------------------------------------------------------------------------------
Q 048729 135 -------------------------------------------------------------------------------- 134 (330)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (330)
T Consensus 185 th~~l~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~ 264 (620)
T 4dg8_A 185 THAGITRLCLGQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLF 264 (620)
T ss_dssp EHHHHHHHHSSCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHH
T ss_pred chHHHHHHHHHHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHH
Confidence
Q ss_pred --------------------------------------------------------------hHHHHhhccCCcccCcee
Q 048729 135 --------------------------------------------------------------QRARLKARQGVKTVGLAE 152 (330)
Q Consensus 135 --------------------------------------------------------------~~~~~~~~~G~~~~g~te 152 (330)
.......++|.|++|. +
T Consensus 265 ~~l~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~-~ 343 (620)
T 4dg8_A 265 NTLVDLDPDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGT-A 343 (620)
T ss_dssp HHHHHHCGGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTE-E
T ss_pred HHHHhcChhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCCCCceecccCc-E
Confidence 0011123567777775 8
Q ss_pred EEEeCCCCCcc-cCCCCceecEEEEecCcccccccCCchhhhccccCC-------CeEEeCceEEEecCceEEEEecCCC
Q 048729 153 VDVVNPETGES-VKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDN-------GWFYTGDIGVMHADGYVEIKDRSKD 224 (330)
Q Consensus 153 ~~i~d~~~g~~-~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~-------g~~~TGD~~~~~~~G~l~~~GR~dd 224 (330)
++|+|+ ++.+ ++.+ +.|||+++|+++++||+++|+.+.+.|..+ +||+|||+|++|+||+++|+||.||
T Consensus 344 ~~i~d~-~~~~~~~~g--~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd 420 (620)
T 4dg8_A 344 VLLLDE-HGQEIAEPD--RAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDG 420 (620)
T ss_dssp EEEECT-TSCBCCSSS--CCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSS
T ss_pred EEEECc-cCCCCCCCC--CceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCC
Confidence 889998 6666 6777 889999999999999999999999988643 7999999999999999999999999
Q ss_pred eEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEE
Q 048729 225 VIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVV 304 (330)
Q Consensus 225 ~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~ 304 (330)
+||++|++|+|.+||+.|.+||+|.+++|++.+++..+. ++++++... .++.+.+.++|+.|++|..++
T Consensus 421 ~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~-lv~~~~~~~----------~~~~~~l~~~Lp~y~~P~~~~ 489 (620)
T 4dg8_A 421 QVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQ-LLCAWTGKA----------DASPQALLRQLPTWQRPHACV 489 (620)
T ss_dssp EEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEE-EEEEEEECT----------TCCCHHHHHHSCGGGSCSEEE
T ss_pred EEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceE-EEEEEecCh----------HHHHHHHHHhChhhcCCcEEE
Confidence 999999999999999999999999999999988764333 344443222 123345677899999999999
Q ss_pred EccCCCCCCCCcccHHHHHHHhhh
Q 048729 305 FSEELPKTSTGKIQKYLLREFAKS 328 (330)
Q Consensus 305 ~v~~lP~t~~GKv~r~~l~~~~~~ 328 (330)
++++||+|++||+||++|++.+.+
T Consensus 490 ~v~~lP~t~~GKidR~~L~~~~~~ 513 (620)
T 4dg8_A 490 RVEALPLTAHGKLDRAALLRRLEE 513 (620)
T ss_dssp ECSSCCCC----CCHHHHHHHTCS
T ss_pred EECcCCCCcccCHhHHHHhhcccc
Confidence 999999999999999999987753
No 21
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=1.4e-51 Score=397.88 Aligned_cols=309 Identities=23% Similarity=0.333 Sum_probs=265.9
Q ss_pred CCHHHHHHHHHHhcCCCcEEEe------CCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhc
Q 048729 15 LTTLGFLERAAAAYTDCPSLVY------NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMS 88 (330)
Q Consensus 15 ~~~~~~l~~~~~~~p~~~a~~~------~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~ 88 (330)
.++.++|.++++.+||++|+++ .++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++
T Consensus 76 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 155 (652)
T 1pg4_A 76 NLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARI 155 (652)
T ss_dssp CHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHc
Confidence 3577889899999999999997 3478999999999999999999999999999999999999999999999999
Q ss_pred CcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchH---------HHH--------------------------------
Q 048729 89 GAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTY---------LLL-------------------------------- 127 (330)
Q Consensus 89 G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~---------~~~-------------------------------- 127 (330)
|++++|+++.++++++.+++++.+++++++++.... .+.
T Consensus 156 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~ 235 (652)
T 1pg4_A 156 GAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDL 235 (652)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEE
T ss_pred CcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccccCCCce
Confidence 999999999999999999999999999998754311 000
Q ss_pred ---HHh---cc-Cc------------------------------------------------------------------
Q 048729 128 ---EAL---SL-FP------------------------------------------------------------------ 134 (330)
Q Consensus 128 ---~~~---~~-~~------------------------------------------------------------------ 134 (330)
+.. .. ..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~ 315 (652)
T 1pg4_A 236 WWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSY 315 (652)
T ss_dssp EHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHH
T ss_pred eHHHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHH
Confidence 000 00 00
Q ss_pred ------------------------------------------------------------------------------hH
Q 048729 135 ------------------------------------------------------------------------------QR 136 (330)
Q Consensus 135 ------------------------------------------------------------------------------~~ 136 (330)
..
T Consensus 316 ~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~ 395 (652)
T 1pg4_A 316 LLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAW 395 (652)
T ss_dssp TTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHH
T ss_pred HHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHH
Confidence 00
Q ss_pred -----------------------------------HHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEec--C
Q 048729 137 -----------------------------------ARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRG--G 179 (330)
Q Consensus 137 -----------------------------------~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~--~ 179 (330)
.....++|.|++|. +++|+|+ +|++++.+ +.|||+++| +
T Consensus 396 ~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~-~v~i~d~-~g~~v~~g--~~GEl~i~g~~p 471 (652)
T 1pg4_A 396 EWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGV-QPALVDN-EGHPQEGA--TEGNLVITDSWP 471 (652)
T ss_dssp HHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTC-CEEEECT-TCCBCCSS--EEEEEEECSCCT
T ss_pred HHHHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCC-eEEEECC-CCCCcCCC--ceEEEEEccCCC
Confidence 01124566777785 8899998 89999988 899999999 7
Q ss_pred cccccccCCchhhhcccc--CCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeec
Q 048729 180 CVTVGYFKDKEATRRCIS--DNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARP 257 (330)
Q Consensus 180 ~~~~gy~~~~~~~~~~~~--~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~ 257 (330)
+++.|||++++.+...+. .+|||+|||+|++|+||+++|+||+||+||++|++|+|.+||++|.+||+|.+++|++.+
T Consensus 472 ~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~ 551 (652)
T 1pg4_A 472 GQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIP 551 (652)
T ss_dssp TCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEE
T ss_pred chhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEE
Confidence 899999999988776653 378999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729 258 DMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS 328 (330)
Q Consensus 258 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~ 328 (330)
++..++.++++|+++++.... ....+++++.++++|++|++|+.|+++++||+|++||++|++|++++.+
T Consensus 552 ~~~~g~~l~a~Vv~~~~~~~~-~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 621 (652)
T 1pg4_A 552 HAIKGQAIYAYVTLNHGEEPS-PELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAG 621 (652)
T ss_dssp ETTTEEEEEEEEEECTTCCCC-HHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHT
T ss_pred cCCCCeEEEEEEEECCCCCCC-HHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhC
Confidence 887888999999998765310 0125789999999999999999999999999999999999999998864
No 22
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=6.3e-53 Score=424.61 Aligned_cols=308 Identities=27% Similarity=0.450 Sum_probs=182.5
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEeC--CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcE
Q 048729 14 PLTTLGFLERAAAAYTDCPSLVYN--NTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAI 91 (330)
Q Consensus 14 ~~~~~~~l~~~~~~~p~~~a~~~~--~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~ 91 (330)
..|+.++|.++++.+||++|+++. ++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 60 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~ 139 (979)
T 3tsy_A 60 HLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGAT 139 (979)
T ss_dssp TSCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCE
T ss_pred CCCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCE
Confidence 479999999999999999999986 689999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhc------------------------------------cC--
Q 048729 92 LNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALS------------------------------------LF-- 133 (330)
Q Consensus 92 ~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~------------------------------------~~-- 133 (330)
++|+++.++++++.+++++.++++++++..+...+..... ..
T Consensus 140 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (979)
T 3tsy_A 140 ATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDS 219 (979)
T ss_dssp EEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCTTSCCCTTEEEGGGTSSCCSGGGGGSCC
T ss_pred EEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCcccccCCcccccHHHHhhccccccccCCc
Confidence 9999999999999999999999999998755433221100 00
Q ss_pred ----c---------------------------------------------------------------------------
Q 048729 134 ----P--------------------------------------------------------------------------- 134 (330)
Q Consensus 134 ----~--------------------------------------------------------------------------- 134 (330)
+
T Consensus 220 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~ 299 (979)
T 3tsy_A 220 VEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAI 299 (979)
T ss_dssp SCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEE
T ss_pred CCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEE
Confidence 0
Q ss_pred --------------------------------------------------------------------------------
Q 048729 135 -------------------------------------------------------------------------------- 134 (330)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (330)
T Consensus 300 v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~ 379 (979)
T 3tsy_A 300 LIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGM 379 (979)
T ss_dssp EECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEEC
T ss_pred EEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeech
Confidence
Q ss_pred -h---------------HHHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccC
Q 048729 135 -Q---------------RARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISD 198 (330)
Q Consensus 135 -~---------------~~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~ 198 (330)
+ ......++|.|++|. +++|+|+++|++++.+ +.|||+++|++++.|||++|+.+.+.|..
T Consensus 380 TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i~d~~~~~~~~~g--~~GEl~i~g~~v~~GY~~~p~~t~~~f~~ 456 (979)
T 3tsy_A 380 TEAGPVLAMSLGFAKEPFPVKSGACGTVVRNA-EMKIVDPDTGDSLSRN--QPGEICIRGHQIMKGYLNNPAATAETIDK 456 (979)
T ss_dssp GGGCSEEEECGGGSSSCCCCCTTCCCEECSSC-EEEEECTTSCCBCCTT--CCEEEEEESTTSCSEETTCHHHHHHHBCT
T ss_pred hhhhHHHHhCCCCCCCccccCCCCcCcccCCc-EEEEEeCCCCCCCCCC--CccEEEEECCCccccccCChhhhhhhccC
Confidence 0 000123457777775 8899997689999998 88999999999999999999999999988
Q ss_pred CCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccC
Q 048729 199 NGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELT 278 (330)
Q Consensus 199 ~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 278 (330)
+|||+|||+|++|++|+++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++|+..++..
T Consensus 457 ~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~-- 534 (979)
T 3tsy_A 457 DGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSE-- 534 (979)
T ss_dssp TSCEEEEEEEEECTTSCEEEEEESCC------------------------------------------------------
T ss_pred CCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCCC--
Confidence 999999999999999999999999999999999999999999999999999999999998888889999998877654
Q ss_pred CCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729 279 KKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS 328 (330)
Q Consensus 279 ~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~ 328 (330)
.+.+++++.++++|+.|++|..++++++||+|++||++|++|++++.+
T Consensus 535 --~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 582 (979)
T 3tsy_A 535 --LSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLAN 582 (979)
T ss_dssp --------------------------------------------------
T ss_pred --CCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHh
Confidence 567899999999999999999999999999999999999999998864
No 23
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.6e-51 Score=386.64 Aligned_cols=294 Identities=26% Similarity=0.412 Sum_probs=236.2
Q ss_pred CCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEee
Q 048729 15 LTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNN 94 (330)
Q Consensus 15 ~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~ 94 (330)
+|+.++|.++++++||++|+++.++++||+||.++++++|++|.+. +||+|+++++|++++++++|||+++|++++|
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vp 77 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAM 77 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECSSCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHhcCCceEEEeCCcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEe
Confidence 4778899999999999999999999999999999999999999975 8999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCCcEEEEcccchHHH---------H----------------------------------HHhc
Q 048729 95 INTRLDAHTLSVLLQHSESKLVFVDHLHTYLL---------L----------------------------------EALS 131 (330)
Q Consensus 95 l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~---------~----------------------------------~~~~ 131 (330)
+++.++++++.++++..++++++++....... . ....
T Consensus 78 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (501)
T 3ipl_A 78 INTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILN 157 (501)
T ss_dssp CCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC--------------------------------CCHHHHTC
T ss_pred cCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccccchhhccccCCcccccc
Confidence 99999999999999999999999875432110 0 0000
Q ss_pred -cC-c---------------------------------------------------------------------------
Q 048729 132 -LF-P--------------------------------------------------------------------------- 134 (330)
Q Consensus 132 -~~-~--------------------------------------------------------------------------- 134 (330)
.. .
T Consensus 158 ~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~ 237 (501)
T 3ipl_A 158 TSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDK 237 (501)
T ss_dssp CCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS
T ss_pred cCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCCC
Confidence 00 0
Q ss_pred --------------------------------------------------------------------------------
Q 048729 135 -------------------------------------------------------------------------------- 134 (330)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (330)
T Consensus 238 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~ 317 (501)
T 3ipl_A 238 FNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGAKLSATMIETALQYNLPIYNSFGMTETCSQFLTA 317 (501)
T ss_dssp CCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSSCCCHHHHHHHHHTTCCEEEEEEEGGGTEEEEEE
T ss_pred CCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCCCCCHHHHHHHHHhCCCEeccccccccccceeec
Confidence
Q ss_pred ---hHHHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEe
Q 048729 135 ---QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMH 211 (330)
Q Consensus 135 ---~~~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~ 211 (330)
.......++|.|++|. +++|+|++ .+ +.|||+++|+.++.||+++++.+.. |. +|||+|||+|++|
T Consensus 318 ~~~~~~~~~~~~G~p~~~~-~~~i~d~~------~~--~~GEl~v~g~~~~~gY~~~~~~t~~-~~-~g~~~TGDl~~~~ 386 (501)
T 3ipl_A 318 TPEMLHARPDTVGMPSANV-DVKIKNPN------KE--GHGELMIKGANVMNGYLYPTDLTGT-FE-NGYFNTGDIAEID 386 (501)
T ss_dssp CHHHHHHCTTCCBEECTTC-EEEEESCC------SS--CCEEEEEESTTSCSCCSBSTTCCCS-EE-TTEEEEEEEEEEC
T ss_pred CccccccCCCCCCCCCCCc-EEEEecCC------CC--CccEEEEeccchhhhhCcChhhcch-hc-CCceecCCEEEEc
Confidence 1112234455566664 66666652 22 6699999999999999999988877 55 8999999999999
Q ss_pred cCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHH
Q 048729 212 ADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR 291 (330)
Q Consensus 212 ~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~ 291 (330)
++|+++++||.||+||++|++|+|.+||+.|.+||+|.+++|++.+++..++.+.++++.... .+.+++++.++
T Consensus 387 ~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~------~~~~~l~~~l~ 460 (501)
T 3ipl_A 387 HEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESD------ISKAQLIAYLS 460 (501)
T ss_dssp TTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSC------CCHHHHHHHHH
T ss_pred CCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCC------CCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998888888888886443 67899999999
Q ss_pred hcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729 292 ARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS 328 (330)
Q Consensus 292 ~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~ 328 (330)
++|+.|++|+.|+++++||+|++||++|++|++...+
T Consensus 461 ~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~ 497 (501)
T 3ipl_A 461 KHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHH 497 (501)
T ss_dssp HHSCGGGSCSEEEECSSCC------------------
T ss_pred hhCccccCCCEEEEecccCCCCCCCEeHHHHhhcccc
Confidence 9999999999999999999999999999999987654
No 24
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=6.1e-51 Score=385.07 Aligned_cols=303 Identities=25% Similarity=0.347 Sum_probs=259.7
Q ss_pred CCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEee
Q 048729 15 LTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNN 94 (330)
Q Consensus 15 ~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~ 94 (330)
.++.++|.+.++ +||++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 24 ~~~~~~l~~~~~-~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vp 102 (529)
T 2v7b_A 24 NFAAYLFRLNET-RAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVV 102 (529)
T ss_dssp CHHHHHHHHTGG-GTTSEEEECSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEEE
T ss_pred eHHHHHHHhhhc-cCCceEEEeCCCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEEe
Confidence 348899999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHH------------------------------hc-cC---------c
Q 048729 95 INTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEA------------------------------LS-LF---------P 134 (330)
Q Consensus 95 l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~------------------------------~~-~~---------~ 134 (330)
+++.++.+++.++++..+++++++++.....+... .. .. +
T Consensus 103 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (529)
T 2v7b_A 103 ANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAPAAKAAATGC 182 (529)
T ss_dssp CCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHHHHTSCCCSSCCCCCT
T ss_pred cCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchhhhhccCCCcccccCCCC
Confidence 99999999999999999999999986544322111 00 00 0
Q ss_pred --------------------------------------------------------------------------------
Q 048729 135 -------------------------------------------------------------------------------- 134 (330)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (330)
T Consensus 183 ~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~ 262 (529)
T 2v7b_A 183 DDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPT 262 (529)
T ss_dssp TSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCC
T ss_pred CCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCC
Confidence
Q ss_pred -------------------------------------------------------------------------h------
Q 048729 135 -------------------------------------------------------------------------Q------ 135 (330)
Q Consensus 135 -------------------------------------------------------------------------~------ 135 (330)
+
T Consensus 263 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~ 342 (529)
T 2v7b_A 263 ADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFL 342 (529)
T ss_dssp HHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEE
T ss_pred HHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceee
Confidence 0
Q ss_pred ----HHHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEe
Q 048729 136 ----RARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMH 211 (330)
Q Consensus 136 ----~~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~ 211 (330)
......++|.|++|. +++|+|+ +|++++.+ +.|||+++|++++.||+++++.+...|. +|||+|||++++|
T Consensus 343 ~~~~~~~~~~~~G~p~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~~~~gY~~~~~~t~~~f~-~~~~~TGDl~~~~ 417 (529)
T 2v7b_A 343 SNRAGAVEYGTTGRPVPGY-EIELRDE-AGHAVPDG--EVGDLYIKGPSAAVMYWNNREKSRATFL-GEWIRSGDKYCRL 417 (529)
T ss_dssp ECCTTCCCTTSCCEECTTC-EEEEECT-TSCBCCTT--SCEEEEEECTTCCCCBTTCHHHHHHHEE-TTEEEEEEEEEEC
T ss_pred ccccCCCccCCcccCCCCC-EEEEECC-CCCCCCCC--CccEEEEecCCcccccCCChHHHHHhhh-cCCcccCceEEEC
Confidence 001123567777885 8999997 89999988 8899999999999999999999999887 8999999999999
Q ss_pred cCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHH
Q 048729 212 ADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR 291 (330)
Q Consensus 212 ~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~ 291 (330)
++|++++.||.||+||++|++|+|.+||+.|.+||+|.+++|++. ++..++.+.+++++.++.... ....+++++.++
T Consensus 418 ~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~-~~~~~~l~~~l~ 495 (529)
T 2v7b_A 418 PNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPS-EILAEELKAFVK 495 (529)
T ss_dssp TTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCCC-HHHHHHHHHHHH
T ss_pred CCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCcc-hhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 555567888999887653200 013468999999
Q ss_pred hcCCCCCCCceEEEccCCCCCCCCcccHHHHHHH
Q 048729 292 ARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREF 325 (330)
Q Consensus 292 ~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~ 325 (330)
++|+.|++|+.++++++||+|++||++|++|+++
T Consensus 496 ~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 529 (529)
T 2v7b_A 496 DRLAPHKYPRDIVFVDDLPKTATGKIQRFKLREQ 529 (529)
T ss_dssp TTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC-
T ss_pred hhcchhhCCeEEEEeccCCCCCccchhHHhHhhC
Confidence 9999999999999999999999999999999863
No 25
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=4.7e-52 Score=390.24 Aligned_cols=301 Identities=26% Similarity=0.345 Sum_probs=239.1
Q ss_pred CCCHHHHHHHHHHhcCC-CcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEE
Q 048729 14 PLTTLGFLERAAAAYTD-CPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAIL 92 (330)
Q Consensus 14 ~~~~~~~l~~~~~~~p~-~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~ 92 (330)
-.++.++|.+.++++|+ ++|+++.++++||+||.++++++|++|. .||+|+++++|++++++++|||+++|+++
T Consensus 21 ~~tl~~~l~~~a~~~p~d~~Al~~~~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga~~ 95 (505)
T 3nyq_A 21 MSSLFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVAA 95 (505)
T ss_dssp ---CCTTTSSCCCSGGGGSEEEEETTEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTCCE
T ss_pred cchhHHHHHHHHHhCCCCCeEEEECCeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCCEE
Confidence 45788899999999987 9999999999999999999999998874 48899999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCCcEEEEcccch--HHHHHHh---------ccC------c---------------------
Q 048729 93 NNINTRLDAHTLSVLLQHSESKLVFVDHLHT--YLLLEAL---------SLF------P--------------------- 134 (330)
Q Consensus 93 ~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~--~~~~~~~---------~~~------~--------------------- 134 (330)
+|+++.++.+++.++++..+++++++++... ..+.... ... .
T Consensus 96 vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~ 175 (505)
T 3nyq_A 96 VPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALGALERVDVDVRARGAVPEDGADDGDPALVVYTSGTTGPPKGAVI 175 (505)
T ss_dssp EEECTTCCHHHHHHHHHHHCCSEEEECTTCCCCGGGTTSEEEECCTTCCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHCCCCEEEECCccccchhhccccccccccccccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEE
Confidence 9999999999999999999999999975321 0000000 000 0
Q ss_pred --------------------------------------------------------------------------------
Q 048729 135 -------------------------------------------------------------------------------- 134 (330)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (330)
T Consensus 176 sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~t~~~~~P~~~~ 255 (505)
T 3nyq_A 176 PRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELNDGATMLFGVPTMYH 255 (505)
T ss_dssp EHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHHTTTCCEEEECHHHHH
T ss_pred eHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChHHHHHHHhhCCeEEEehHHHHH
Confidence
Q ss_pred --------------------------------------------------------------hHHHHhhccCCcccCcee
Q 048729 135 --------------------------------------------------------------QRARLKARQGVKTVGLAE 152 (330)
Q Consensus 135 --------------------------------------------------------------~~~~~~~~~G~~~~g~te 152 (330)
.......++|.|++|. +
T Consensus 256 ~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~-~ 334 (505)
T 3nyq_A 256 RIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGV-E 334 (505)
T ss_dssp HHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTC-E
T ss_pred HHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCCCCCCCcccCCCCC-E
Confidence 0011123456677775 7
Q ss_pred EEEeCCCCCcccCC-CCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecCceEEEEecC-CCeEEeCC
Q 048729 153 VDVVNPETGESVKR-DGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRS-KDVIISGG 230 (330)
Q Consensus 153 ~~i~d~~~g~~~~~-~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~-dd~ik~~G 230 (330)
++|+|+ +|++++. ++++.|||+++|++++.|||++|+.+.+.|..+|||+|||+|++|+||.++++||+ ||+||++|
T Consensus 335 ~~i~d~-~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G 413 (505)
T 3nyq_A 335 LRLVEE-DGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGG 413 (505)
T ss_dssp EEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETT
T ss_pred EEEECC-CCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCC
Confidence 888888 7888876 11288999999999999999999999999988999999999999999999999998 58999999
Q ss_pred eecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCC
Q 048729 231 ENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELP 310 (330)
Q Consensus 231 ~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP 310 (330)
++|+|.+||+.|.++|+|.+++|++.+++..+++++++|+..+.... .+.+++++.++++|+.|++|+.|+++++||
T Consensus 414 ~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~---~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP 490 (505)
T 3nyq_A 414 YKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAP---PALGTLADHVAARLAPHKRPRVVRYLDAVP 490 (505)
T ss_dssp EEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSC---CCHHHHHHHHHHHTCGGGSCSEEEECSCCC
T ss_pred EEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCC---CCHHHHHHHHHhhCCCCcCccEEEEECCCC
Confidence 99999999999999999999999999998888999999998764321 678999999999999999999999999999
Q ss_pred CCCCCcccHHHHHH
Q 048729 311 KTSTGKIQKYLLRE 324 (330)
Q Consensus 311 ~t~~GKv~r~~l~~ 324 (330)
+|++||++|++|++
T Consensus 491 ~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 491 RNDMGKIMKRALNR 504 (505)
T ss_dssp C-------------
T ss_pred CCCCcCeeHHhhcc
Confidence 99999999999986
No 26
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=1.5e-50 Score=391.13 Aligned_cols=311 Identities=23% Similarity=0.381 Sum_probs=262.6
Q ss_pred CCHHHHHHHHHHhcCCCcEEEe------CCeeecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHHHHHHHHHhhh
Q 048729 15 LTTLGFLERAAAAYTDCPSLVY------NNTTYTWSETHRRCLQVASSLS-SVGIQRGHVVSVVAPNVPSMYELQFGVPM 87 (330)
Q Consensus 15 ~~~~~~l~~~~~~~p~~~a~~~------~~~~~T~~el~~~~~~~a~~L~-~~g~~~gd~V~~~~~~~~~~~~~~la~~~ 87 (330)
.++.++|.++++.+||++|+++ .++++||+||.++++++|++|+ +.|+++||+|+++++|++++++++|||++
T Consensus 82 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~ 161 (663)
T 1ry2_A 82 NACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISR 161 (663)
T ss_dssp CHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 4678899999999999999997 3478999999999999999999 99999999999999999999999999999
Q ss_pred cCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchH---------HHHH------------------------------
Q 048729 88 SGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTY---------LLLE------------------------------ 128 (330)
Q Consensus 88 ~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~---------~~~~------------------------------ 128 (330)
+|++++|+++.++++++.+++++.+++++++++.... .+..
T Consensus 162 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 241 (663)
T 1ry2_A 162 IGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDL 241 (663)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEE
T ss_pred cCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccccCCCccc
Confidence 9999999999999999999999999999999765321 0100
Q ss_pred ----Hhc---c-Cc------------------------------------------------------------------
Q 048729 129 ----ALS---L-FP------------------------------------------------------------------ 134 (330)
Q Consensus 129 ----~~~---~-~~------------------------------------------------------------------ 134 (330)
... . ..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~ 321 (663)
T 1ry2_A 242 DWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTY 321 (663)
T ss_dssp EHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHH
T ss_pred cHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHH
Confidence 000 0 00
Q ss_pred ------------------------------------------------------------------------------hH
Q 048729 135 ------------------------------------------------------------------------------QR 136 (330)
Q Consensus 135 ------------------------------------------------------------------------------~~ 136 (330)
..
T Consensus 322 ~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~ 401 (663)
T 1ry2_A 322 VVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVW 401 (663)
T ss_dssp TTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHH
T ss_pred HHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHH
Confidence 00
Q ss_pred ------------------------------------HHHhhccCCcccCceeEEEeCCCCCcccCC-CCceecEEEEec-
Q 048729 137 ------------------------------------ARLKARQGVKTVGLAEVDVVNPETGESVKR-DGVSLGEVVLRG- 178 (330)
Q Consensus 137 ------------------------------------~~~~~~~G~~~~g~te~~i~d~~~g~~~~~-~~~~~Gel~v~~- 178 (330)
.....++|.|++|. +++|+|+++|++++. + +.|||+++|
T Consensus 402 ~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~-~v~i~d~~~g~~v~~~g--~~Gel~i~g~ 478 (663)
T 1ry2_A 402 EWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGI-DAVVLDPNTGEELNTSH--AEGVLAVKAA 478 (663)
T ss_dssp HHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTC-CEEEECSSSTTCEECSS--CEEEEEESSC
T ss_pred HHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCC-eEEEEcCCCCCcCCCCC--cceEEEEecC
Confidence 01123456667775 788888767888887 6 789999999
Q ss_pred -CcccccccCCchhhhcccc--CCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEe
Q 048729 179 -GCVTVGYFKDKEATRRCIS--DNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVA 255 (330)
Q Consensus 179 -~~~~~gy~~~~~~~~~~~~--~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~ 255 (330)
|+++.|||++++.+.+.|. .+|||+|||+|++|+||+++|+||+||+||++|++|++.+||++|.+||+|.+++|++
T Consensus 479 ~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg 558 (663)
T 1ry2_A 479 WPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVG 558 (663)
T ss_dssp CTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEEC
T ss_pred CCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEE
Confidence 5899999999998877663 2789999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCceeEEEEEecCCcc---c-C--CCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729 256 RPDMFWGEIPCAFVSLKRDLE---L-T--KKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS 328 (330)
Q Consensus 256 ~~~~~~~~~~~~~v~~~~~~~---~-~--~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~ 328 (330)
.+++..++.++++|+++++.. . + .....+++++.++++|++|++|+.|+++++||+|++||++|+.|++++.+
T Consensus 559 ~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 637 (663)
T 1ry2_A 559 FNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAG 637 (663)
T ss_dssp CCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC-
T ss_pred EecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcC
Confidence 998888889999999887643 1 0 00236889999999999999999999999999999999999999998754
No 27
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=5.1e-52 Score=395.17 Aligned_cols=315 Identities=19% Similarity=0.243 Sum_probs=170.0
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEeCC----------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHH
Q 048729 11 NSTPLTTLGFLERAAAAYTDCPSLVYNN----------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYE 80 (330)
Q Consensus 11 ~~~~~~~~~~l~~~~~~~p~~~a~~~~~----------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~ 80 (330)
....+|+.++|.++++++||++|+++.+ +++||+||.++++++|++|.+.|+ +||+|+++++|++++++
T Consensus 16 ~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~ 94 (562)
T 3ite_A 16 YTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFA 94 (562)
T ss_dssp --CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHH
T ss_pred ecccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHH
Confidence 3567899999999999999999999743 789999999999999999999999 79999999999999999
Q ss_pred HHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHH--------------------HHHhccC-------
Q 048729 81 LQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLL--------------------LEALSLF------- 133 (330)
Q Consensus 81 ~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~--------------------~~~~~~~------- 133 (330)
++|||+++|++++|+++.++.+++.++++..++++++++......+ .......
T Consensus 95 ~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (562)
T 3ite_A 95 IIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIENLSTQDTSDILNNYPE 174 (562)
T ss_dssp HHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCCCTTCEEEETTCHHHHHHHHHSCCSCCCCCCCT
T ss_pred HHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccccCccceeecccchhhhhhcccccccccccCCCC
Confidence 9999999999999999999999999999999999998864321110 0000000
Q ss_pred ---c----------------------------------------------------------------------------
Q 048729 134 ---P---------------------------------------------------------------------------- 134 (330)
Q Consensus 134 ---~---------------------------------------------------------------------------- 134 (330)
.
T Consensus 175 ~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~ 254 (562)
T 3ite_A 175 NLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVT 254 (562)
T ss_dssp TSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEE
T ss_pred CCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEe
Confidence 0
Q ss_pred -------------------------------------------------------hH-----------------------
Q 048729 135 -------------------------------------------------------QR----------------------- 136 (330)
Q Consensus 135 -------------------------------------------------------~~----------------------- 136 (330)
..
T Consensus 255 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~ 334 (562)
T 3ite_A 255 GERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVPEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIG 334 (562)
T ss_dssp CCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCCGGGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSC
T ss_pred cchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccCccccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheee
Confidence 00
Q ss_pred --------HHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCC--eEEeCc
Q 048729 137 --------ARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNG--WFYTGD 206 (330)
Q Consensus 137 --------~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g--~~~TGD 206 (330)
.....++|.|++|. +++++|++++.+++.+ +.|||+++|++++.|||++|+.+...+. +| ||+|||
T Consensus 335 ~~~~~~~~~~~~~~~G~p~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~~~-~g~~w~~TGD 410 (562)
T 3ite_A 335 CSAGRILPDSDTRCIGHPLGDS-VAHVLAPGSNEHVKKG--MAGELVIEGSLVANGYLNRPDAKGFCDI-NGRKMYRTGD 410 (562)
T ss_dssp SEEEECCTTSCTTEEEEECTTC-EEEEECTTSSCBCCTT--SCEEEEEESTTSCCEESSCTTCCSEEEE-TTEEEEEEEE
T ss_pred eeeeeecCCCCCccccccCCCC-eEEEEeCCCCCCCCCC--CceEEEEeccccchhhCCCccccccccC-CCCEEEecCC
Confidence 01122345555554 6778887678889988 8899999999999999999998876654 55 999999
Q ss_pred eEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcC-cCcceEEEEeecCCCCCceeEEEEEecCCcccC-------
Q 048729 207 IGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSI-TAVNEAAVVARPDMFWGEIPCAFVSLKRDLELT------- 278 (330)
Q Consensus 207 ~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~-~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~------- 278 (330)
+|++|+||+++|+||.||+||++|++|+|.+||++|.++ |.+.+++|++..++..++..++.++...+....
T Consensus 411 lg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 490 (562)
T 3ite_A 411 IVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWIN 490 (562)
T ss_dssp EEEECTTSCEEEEEEC----------------------------------------------------------------
T ss_pred EEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccccccccc
Confidence 999999999999999999999999999999999999998 788899988888876666665555544432210
Q ss_pred --CCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCC-CCCcccHHHHHHHhhhcC
Q 048729 279 --KKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKT-STGKIQKYLLREFAKSVS 330 (330)
Q Consensus 279 --~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t-~~GKv~r~~l~~~~~~~~ 330 (330)
.....++++++++++|+.|++|+.|+++++||+| ++||++|++|++++++++
T Consensus 491 ~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~~~~~ 545 (562)
T 3ite_A 491 ENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMFHTLS 545 (562)
T ss_dssp -------------------------------------------------------
T ss_pred cchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHHHhccC
Confidence 0123458999999999999999999999999998 899999999999997653
No 28
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=1.9e-50 Score=416.26 Aligned_cols=306 Identities=23% Similarity=0.310 Sum_probs=268.6
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcC
Q 048729 10 ANSTPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSG 89 (330)
Q Consensus 10 ~~~~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G 89 (330)
.+.+..++.++|.++++++||++|+++.++++||+||.++++++|++|.+.|+++||+|++++++++++++++|||+++|
T Consensus 459 ~~~~~~~l~~~~~~~~~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG 538 (1304)
T 2vsq_A 459 QAHETKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAG 538 (1304)
T ss_dssp CCCCCCCHHHHHHHHHHHCTTSEEEESSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHC
Confidence 34445789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHH---------------hcc--------Cc------------
Q 048729 90 AILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEA---------------LSL--------FP------------ 134 (330)
Q Consensus 90 ~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~---------------~~~--------~~------------ 134 (330)
++++|+++.++.+++.+++++.++++++++......+... ... .+
T Consensus 539 ~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayiiyTSGS 618 (1304)
T 2vsq_A 539 AAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQASDPATAIDPNDPAYIMYTSGT 618 (1304)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCCCSEEEESSCGGGGGSCSSCCCCCCCTTSEEEEEEECCS
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCCCCcEEEeccccccccccCCCCCCCCCCCeEEEEeCCCC
Confidence 9999999999999999999999999999976543221000 000 00
Q ss_pred --------------------------------------------------------------------------------
Q 048729 135 -------------------------------------------------------------------------------- 134 (330)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (330)
T Consensus 619 TG~PKgV~~~h~~l~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~v 698 (1304)
T 2vsq_A 619 TGKPKGNITTHANIQGLVKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENV 698 (1304)
T ss_dssp SSSCEEEEEEHHHHHHHHSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTC
T ss_pred CCCCCEEEEehHHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCC
Confidence
Q ss_pred ----------------------------------------h--------------------------------HHHHhhc
Q 048729 135 ----------------------------------------Q--------------------------------RARLKAR 142 (330)
Q Consensus 135 ----------------------------------------~--------------------------------~~~~~~~ 142 (330)
. ......+
T Consensus 699 t~~~~~p~~~~~l~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~ 778 (1304)
T 2vsq_A 699 NVMFATTALFNLLTDAGEDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLP 778 (1304)
T ss_dssp CEEEEEHHHHHHHHHHCSHHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCC
T ss_pred cEEEccHHHHHHHHhhchhcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCC
Confidence 0 0001124
Q ss_pred cCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccC------CCeEEeCceEEEecCceE
Q 048729 143 QGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISD------NGWFYTGDIGVMHADGYV 216 (330)
Q Consensus 143 ~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~------~g~~~TGD~~~~~~~G~l 216 (330)
+|+|+.|. ++.|+|+ +++++|.| +.|||+|+|+++++||+++|+.+.+.|.. ++||+|||+|++++||.+
T Consensus 779 iG~p~~~~-~~~i~d~-~~~~~p~G--~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l 854 (1304)
T 2vsq_A 779 IGKPISNA-SVYILNE-QSQLQPFG--AVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTI 854 (1304)
T ss_dssp CBEECTTE-EEEEECT-TSCBCCTT--CCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCE
T ss_pred CceeeCCC-EEEEECC-CcCCCCCC--CceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeE
Confidence 56677774 8888898 89999998 88999999999999999999999988842 459999999999999999
Q ss_pred EEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCC
Q 048729 217 EIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPR 296 (330)
Q Consensus 217 ~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~ 296 (330)
+|+||+||+||++|++|+|.+||+.|.++|+|.+++|++..++..+++++++++.... .+.+++++.++++||.
T Consensus 855 ~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~------~~~~~l~~~l~~~Lp~ 928 (1304)
T 2vsq_A 855 EYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQ------LSAEDVKAHLKKQLPA 928 (1304)
T ss_dssp EEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSS------SCHHHHHHHHHHHSCG
T ss_pred EEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCC------CCHHHHHHHHHHhChH
Confidence 9999999999999999999999999999999999999999888778899999987653 5779999999999999
Q ss_pred CCCCceEEEccCCCCCCCCcccHHHHHHH
Q 048729 297 YMVPRKVVFSEELPKTSTGKIQKYLLREF 325 (330)
Q Consensus 297 ~~~p~~~~~v~~lP~t~~GKv~r~~l~~~ 325 (330)
|++|..|+++++||+|+|||+||++|.+.
T Consensus 929 ymvP~~~~~l~~lP~t~~GKidR~~L~~~ 957 (1304)
T 2vsq_A 929 YMVPQTFTFLDELPLTTNGKVNKRLLPKP 957 (1304)
T ss_dssp GGSCSEEEEESCCCCCSSCSSCCSCCCCC
T ss_pred hhhccEEEEecccCCCCCcccCHhhcCCc
Confidence 99999999999999999999999988654
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=5e-48 Score=368.83 Aligned_cols=304 Identities=20% Similarity=0.283 Sum_probs=258.8
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEeC---CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcC
Q 048729 13 TPLTTLGFLERAAAAYTDCPSLVYN---NTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSG 89 (330)
Q Consensus 13 ~~~~~~~~l~~~~~~~p~~~a~~~~---~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G 89 (330)
...|+.++|.+.++.+|+.+++.+. ++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|
T Consensus 19 ~~~tl~~~l~~~a~~~p~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 98 (576)
T 3gqw_A 19 DFPTLVDALDYAALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAG 98 (576)
T ss_dssp CCSSHHHHHHHHTTSSCEEEEECTTSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHhhCCCCeEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhC
Confidence 3559999999999999999888753 4789999999999999999999999999999999999999999999999999
Q ss_pred cEEeecCCCCC-------HHHHHHHHHhcCCcEEEEcccchHHHHHHhccCc----------------------------
Q 048729 90 AILNNINTRLD-------AHTLSVLLQHSESKLVFVDHLHTYLLLEALSLFP---------------------------- 134 (330)
Q Consensus 90 ~~~~~l~~~~~-------~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~---------------------------- 134 (330)
++++|+++.++ .+++.++++..++++++++......+........
T Consensus 99 ~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 178 (576)
T 3gqw_A 99 LVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVLSHAWFKALPEADVALQRPVPNDI 178 (576)
T ss_dssp CEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTCEEEEHHHHHTSCCCCCCCCCCCTTSE
T ss_pred CeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCcceecchhhhhcccccccccCCCCCCCe
Confidence 99999999998 7899999999999999998876655443221100
Q ss_pred --------------------------------------------------------------------------------
Q 048729 135 -------------------------------------------------------------------------------- 134 (330)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (330)
T Consensus 179 a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~ 258 (576)
T 3gqw_A 179 AYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMR 258 (576)
T ss_dssp EEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHC
T ss_pred EEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhC
Confidence
Q ss_pred -----------------------------------------------------------hH-HHHh--------------
Q 048729 135 -----------------------------------------------------------QR-ARLK-------------- 140 (330)
Q Consensus 135 -----------------------------------------------------------~~-~~~~-------------- 140 (330)
.. ..+.
T Consensus 259 ~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG 338 (576)
T 3gqw_A 259 PLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYG 338 (576)
T ss_dssp TTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEE
T ss_pred HHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCcccccccCC
Confidence 00 0000
Q ss_pred ----------------------------------------------hccCCcccCceeEEEeCCCCCcccCCCCceecEE
Q 048729 141 ----------------------------------------------ARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEV 174 (330)
Q Consensus 141 ----------------------------------------------~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel 174 (330)
.++|.|++|. +++|+|+ +|++++.+ +.|||
T Consensus 339 ~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i~d~-~g~~~~~g--~~GEl 414 (576)
T 3gqw_A 339 LAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEH-GIEIRNE-AGMPVAER--VVGHI 414 (576)
T ss_dssp CGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTC-EEEEECT-TSCBCCTT--BCEEE
T ss_pred cccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCC-eEEEECC-CCCCCCCC--CeEEE
Confidence 0467777775 8899997 89999998 89999
Q ss_pred EEecCcccccccCCchhhhccccCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEE
Q 048729 175 VLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVV 254 (330)
Q Consensus 175 ~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~ 254 (330)
+++|++++.|||++++.+...+. +|||+|||+|++ +||.++++||.||+||++|++|+|.+||++|.+||+|.+++++
T Consensus 415 ~v~g~~~~~gY~~~~~~~~~~~~-~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv 492 (576)
T 3gqw_A 415 CISGPSLMSGYFGDQVSQDEIAA-TGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAI 492 (576)
T ss_dssp EEESTTSCCCBTTCHHHHHHHHH-HSCEEEEEEEEE-ETTEEEEEEETTTCEEETTEEECHHHHHHHHTTSSSCCTTSEE
T ss_pred EEeCccccccccCCccccccccC-CCeeeccceEEE-ECCEEEEEecCcceEEECCEEECHHHHHHHHHhCcccccccEE
Confidence 99999999999999988777665 899999999999 6999999999999999999999999999999999999998888
Q ss_pred eecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcC-CCCCCCceEEEcc--CCCCCCCCcccHHHHHHHhhh
Q 048729 255 ARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARL-PRYMVPRKVVFSE--ELPKTSTGKIQKYLLREFAKS 328 (330)
Q Consensus 255 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~p~~~~~v~--~lP~t~~GKv~r~~l~~~~~~ 328 (330)
+...+. +...+++....... ...+++.+.+.+++ +.+.+|..+.+++ +||+|++||++|++|++++++
T Consensus 493 ~~~~~~--~~~~~~~~~~~~~~----~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~~GKi~r~~l~~~~~~ 563 (576)
T 3gqw_A 493 AFVTAQ--EKIILQIQCRISDE----ERRGQLIHALAARIQSEFGVTAAIDLLPPHSIPRTSSGKPARAEAKKRYQK 563 (576)
T ss_dssp EEECTT--SCEEEEEECCCCCH----HHHHHHHHHHHHHHHHHHSCCEEEEEECSSCSCBCTTSSBCHHHHHHHHHH
T ss_pred EEEcCC--ccEEEEEEEecCch----hHHHHHHHHHHHHHHHHhCCceeEEEECCCCcCcCCCccchHHHHHHHHHH
Confidence 877653 34555555544433 34578888888888 6789999988887 999999999999999999865
No 30
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=3.1e-48 Score=371.22 Aligned_cols=311 Identities=18% Similarity=0.248 Sum_probs=252.9
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEeC----CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhh
Q 048729 12 STPLTTLGFLERAAAAYTDCPSLVYN----NTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPM 87 (330)
Q Consensus 12 ~~~~~~~~~l~~~~~~~p~~~a~~~~----~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~ 87 (330)
....|+.++|.+.++.+||++|+++. ++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||++
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~ 87 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLY 87 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHH
Confidence 35679999999999999999999873 58899999999999999999999999999999999999999999999999
Q ss_pred cCcEEeecCCCCC---HHHHHHHHHhcCCcEEEEcccchHHHHHHh-c----------------------cC------c-
Q 048729 88 SGAILNNINTRLD---AHTLSVLLQHSESKLVFVDHLHTYLLLEAL-S----------------------LF------P- 134 (330)
Q Consensus 88 ~G~~~~~l~~~~~---~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~-~----------------------~~------~- 134 (330)
+|++++|+++.+. .+++.++++..++++++++......+.... . .. +
T Consensus 88 ~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (590)
T 3kxw_A 88 AGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIALESIELNRSSSWQPTSIKSN 167 (590)
T ss_dssp TTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEEGGGCCGGGGGGCCCCCCCTT
T ss_pred hCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceeechhccccccccCCCCCCCCC
Confidence 9999999999884 578999999999999998765544332110 0 00 0
Q ss_pred --------------------------------------------------------------------------------
Q 048729 135 -------------------------------------------------------------------------------- 134 (330)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (330)
T Consensus 168 d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 247 (590)
T 3kxw_A 168 DIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQ 247 (590)
T ss_dssp SEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHH
T ss_pred CeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHH
Confidence
Q ss_pred ------------------------------------------------------------hHHHHhhccC------Cccc
Q 048729 135 ------------------------------------------------------------QRARLKARQG------VKTV 148 (330)
Q Consensus 135 ------------------------------------------------------------~~~~~~~~~G------~~~~ 148 (330)
.........| .+.|
T Consensus 248 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~Y 327 (590)
T 3kxw_A 248 NPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCY 327 (590)
T ss_dssp CTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEE
T ss_pred CHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCcccccccc
Confidence 0001111111 1236
Q ss_pred Ccee---------------------------------------------------EEEeCCCCCcccCCCCceecEEEEe
Q 048729 149 GLAE---------------------------------------------------VDVVNPETGESVKRDGVSLGEVVLR 177 (330)
Q Consensus 149 g~te---------------------------------------------------~~i~d~~~g~~~~~~~~~~Gel~v~ 177 (330)
|.|| ++|+|++++.+++.+ +.|||+++
T Consensus 328 G~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~v~i~d~~~~~~~~~g--~~GEl~v~ 405 (590)
T 3kxw_A 328 GLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTLIPCDFD--QVGEIWVQ 405 (590)
T ss_dssp ECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSEEEEECTTTCCBCCTT--BCEEEEEE
T ss_pred ccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCCeEEEcCCCCcCCCCC--CEEEEEEe
Confidence 6655 355666558888888 88999999
Q ss_pred cCcccccccCCchhhhccccC------CC--eEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHH-hcCcCc
Q 048729 178 GGCVTVGYFKDKEATRRCISD------NG--WFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVL-YSITAV 248 (330)
Q Consensus 178 ~~~~~~gy~~~~~~~~~~~~~------~g--~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l-~~~~~v 248 (330)
|++++.|||++|+.+.+.|.. +| ||+|||+|++| +|.++|+||.||+||++|++|+|.+||+.| ..+|+|
T Consensus 406 g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v 484 (590)
T 3kxw_A 406 SNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHH 484 (590)
T ss_dssp STTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHHHHSGGGG
T ss_pred CCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHHHhcCccc
Confidence 999999999999999988853 24 99999999999 999999999999999999999999999999 789999
Q ss_pred c--eEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCC-CCCCc-eEEEc--cCCCCCCCCcccHHHH
Q 048729 249 N--EAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPR-YMVPR-KVVFS--EELPKTSTGKIQKYLL 322 (330)
Q Consensus 249 ~--~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~p~-~~~~v--~~lP~t~~GKv~r~~l 322 (330)
. +++|++.+++. ++.+++++++.++... ..+.+++.+.++++++. +.+|. .+.++ ++||+|++||++|++|
T Consensus 485 ~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~--~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L 561 (590)
T 3kxw_A 485 VLGKCAAFVIQEEH-EYKLTVMCEVKNRFMD--DVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFC 561 (590)
T ss_dssp GEEEEEEEEEEETT-EEEEEEEEEESCTTCC--HHHHHHHHHHHHHHHHHHHSCCCCEEEEEETTCSCCCSCHHHHHHHH
T ss_pred cCccEEEEEecCCC-CceEEEEEEecccccc--chhHHHHHHHHHHHHHHHcCCceeEEEEECCCccCcCCCcHHHHHHH
Confidence 8 79999888765 6778888888776310 03567888888888875 67775 45544 7999999999999999
Q ss_pred HHHhhh
Q 048729 323 REFAKS 328 (330)
Q Consensus 323 ~~~~~~ 328 (330)
++++.+
T Consensus 562 ~~~~~~ 567 (590)
T 3kxw_A 562 RKHLLD 567 (590)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 999865
No 31
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=2.1e-35 Score=265.04 Aligned_cols=288 Identities=14% Similarity=0.106 Sum_probs=211.1
Q ss_pred HhcCCCcEEE-eCC--------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeec
Q 048729 26 AAYTDCPSLV-YNN--------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNI 95 (330)
Q Consensus 26 ~~~p~~~a~~-~~~--------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l 95 (330)
+.+.|.+|++ +++ -.+|++.+...+..++. ..+++++|+++.++|.++.+ +..++..+..|+..+..
T Consensus 33 ~w~~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~ 109 (358)
T 4gs5_A 33 KWLGGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVT 109 (358)
T ss_dssp HHHHTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEE
T ss_pred ccCCCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEec
Confidence 3345666665 322 23999988776665554 45899999999999987654 34456666777777666
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhccCc-----------------hHHHHhhccCCc---ccCceeEEE
Q 048729 96 NTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSLFP-----------------QRARLKARQGVK---TVGLAEVDV 155 (330)
Q Consensus 96 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~G~~---~~g~te~~i 155 (330)
++... ....+++.+++.+...|.++..+........ ...+.....|.+ .||.||+..
T Consensus 110 ~~~~~---~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~~~YG~TEt~~ 186 (358)
T 4gs5_A 110 EPTAN---PLAGLDHADFDFVAMVPMQLQSILENSATSGQVDRLGKVLLGGAPVNHALAMQISDLAMPVYQSYGMTETVS 186 (358)
T ss_dssp CCCSC---TTTTCSSCCCSEEEECHHHHHHHHHCTTTGGGGGGGCSEEECSSCCCHHHHHHHHTCSSCEEEEEECGGGSS
T ss_pred Ccccc---HHHHHHHhCCeEEEcChHHHHHhhccccccccCCcceEEEEcccCCCchheecccccCceEEeccccccccc
Confidence 65433 2456889999999999988877654322111 222222334544 599988432
Q ss_pred eCCCCCcccCCCCceecEEEEecCcccccccCCchhhhc-cccCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecC
Q 048729 156 VNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRR-CISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENIC 234 (330)
Q Consensus 156 ~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~-~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~ 234 (330)
.- ...+++.. +.|++.+.+|++..+|.++++...+ .+..+|||+|||+|++|++| ++++||.||+||++|++|+
T Consensus 187 ~~--~~~~~~~~--~~g~~~~~~pgv~~~~~~~Gel~~~g~~~~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~ 261 (358)
T 4gs5_A 187 HV--ALKALNGP--EASELYVFLPGIQYGVDERGCLHISGAVTNGQTVQTNDLVEIHGNA-FQWIGRADNVINSGGVKIV 261 (358)
T ss_dssp EE--EEEECSST--TCCSCEEECTTCEEEECTTSEEEEESGGGTTCCEEEEEEEEECSSE-EEEEEEGGGEEEETTEEEE
T ss_pred ee--eccccccc--ccceeeccCCCeEEEecCcCceEEecccccCcceecCCccccccCc-eEEcccccCeEEECCEEEC
Confidence 10 11223333 5588888888888888877664433 33458999999999999888 7778999999999999999
Q ss_pred HHHHHHHH---hcCcCcceEEEE-eecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCC
Q 048729 235 SAEVESVL---YSITAVNEAAVV-ARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELP 310 (330)
Q Consensus 235 ~~~iE~~l---~~~~~v~~~~v~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP 310 (330)
|.+||+.| ..||+|.+++|+ +.+++..++.++++++..... ...+++++.++++|+.|++|+.|+++++||
T Consensus 262 p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~-----~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP 336 (358)
T 4gs5_A 262 LDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPE-----ALTERLTAEIRSRVSTYENPKHIYFAKAFA 336 (358)
T ss_dssp HHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCH-----HHHHHHHHHHHHHSCGGGSCSCEEEESSCC
T ss_pred HHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCCC-----cCHHHHHHHHHhhCCCCCCceEEEEECCcC
Confidence 99999877 458999998876 566777788888888765543 456899999999999999999999999999
Q ss_pred CCCCCcccHHHHHHHhhhc
Q 048729 311 KTSTGKIQKYLLREFAKSV 329 (330)
Q Consensus 311 ~t~~GKv~r~~l~~~~~~~ 329 (330)
+|++||++|++|++++.+-
T Consensus 337 ~t~~GKi~R~~L~~~l~e~ 355 (358)
T 4gs5_A 337 KTQTDKIDKRATFQKLSDS 355 (358)
T ss_dssp BCTTSCBCHHHHHHHTC--
T ss_pred CCCCCChhHHHHHHHhhhh
Confidence 9999999999999998763
No 32
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=8.8e-32 Score=248.10 Aligned_cols=262 Identities=21% Similarity=0.232 Sum_probs=200.8
Q ss_pred ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--HHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729 41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNV--PSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV 118 (330)
Q Consensus 41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~--~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~ 118 (330)
+|++.+...+..+++.+...++.++|+++.+.|.+ ...+..+++++..|+.+++.+. ..++.+...+++.++++++.
T Consensus 106 ~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~ 184 (436)
T 3qov_A 106 HSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA-GNSKRQIKFISDFKTTALHA 184 (436)
T ss_dssp EEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHTCCEEEC
T ss_pred ECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHHCCCEEEE
Confidence 89999998888888888888999999999999864 3445567888999999887664 47789999999999999999
Q ss_pred cccchHHHHHHhcc------Cc---------------hHHHHhhccCC---cccCce-----------------------
Q 048729 119 DHLHTYLLLEALSL------FP---------------QRARLKARQGV---KTVGLA----------------------- 151 (330)
Q Consensus 119 ~~~~~~~~~~~~~~------~~---------------~~~~~~~~~G~---~~~g~t----------------------- 151 (330)
.|.++..+...... .. ....+....|. +.||.|
T Consensus 185 ~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~g~~~~~~~ 264 (436)
T 3qov_A 185 IPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQEQNGMHFWEDC 264 (436)
T ss_dssp CHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECTTCSSEEECTTT
T ss_pred CHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecCCCCeeEEccCc
Confidence 99988777654211 11 11111111121 123333
Q ss_pred -eEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecCc------e---EEEEec
Q 048729 152 -EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADG------Y---VEIKDR 221 (330)
Q Consensus 152 -e~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G------~---l~~~GR 221 (330)
+++|+|+++|++++.+ +.|||+++|.. ...+. ++||+|||+|+++++| . +++.||
T Consensus 265 ~~v~i~d~~~g~~~~~g--~~Gel~v~~~~------------~~~~~-~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR 329 (436)
T 3qov_A 265 YLVEIIDPETGEPVPEG--EIGELVLTTLD------------REMMP-LIRYRTRDLTRILPGKCPCGRTHLRIDRIKGR 329 (436)
T ss_dssp EEEEEECTTTCSBCSTT--CCEEEEEEESS------------CCSSC-CCSEEEEEEECEECSCCTTCCCSCEECCCCCB
T ss_pred eEEEEEECCCCCCCCCC--CceEEEEeccC------------cCCce-EEEEEcCCEEEEcCCCCCCCCCccccCcccCc
Confidence 5677886689999988 88999999832 22232 7899999999999998 5 699999
Q ss_pred CCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCC-CCC
Q 048729 222 SKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRY-MVP 300 (330)
Q Consensus 222 ~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~p 300 (330)
.||+||++|++|+|.+||++|.++|+|.++++++..++..++.+.++|++. +...+...+.+++.+.++++|+.+ .+|
T Consensus 330 ~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~p 408 (436)
T 3qov_A 330 SDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DLSTDNYIELEKIRRDIIRQLKDEILVT 408 (436)
T ss_dssp SSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTCCCCHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-CccccchhhHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999999999999998877778999999988 543110012678999999999888 899
Q ss_pred ceEEEcc--CCCCCCCCcccHH
Q 048729 301 RKVVFSE--ELPKTSTGKIQKY 320 (330)
Q Consensus 301 ~~~~~v~--~lP~t~~GKv~r~ 320 (330)
..+.+++ +||+|+ ||++|.
T Consensus 409 ~~i~~v~~~~lP~t~-GKi~R~ 429 (436)
T 3qov_A 409 PKVKLVKKGSLPQSE-GKAVRV 429 (436)
T ss_dssp CEEEEECTTCCC--------CE
T ss_pred eEEEEeCCCcccCcC-CcceEE
Confidence 9999999 999999 999985
No 33
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=99.98 E-value=1.2e-31 Score=250.09 Aligned_cols=120 Identities=21% Similarity=0.267 Sum_probs=104.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCCCcEEEeCC---------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH
Q 048729 7 PNSANSTPLTTLGFLERAAAAYTDCPSLVYNN---------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPS 77 (330)
Q Consensus 7 ~~~~~~~~~~~~~~l~~~~~~~p~~~a~~~~~---------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~ 77 (330)
++.-+++..|+.++|.++++++||++|+++.+ +++||+||.++++++|++|.+.|+ +||+|+++++|+++
T Consensus 16 ~~~~~~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e 94 (480)
T 3t5a_A 16 PRGSHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLE 94 (480)
T ss_dssp --------CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHH
T ss_pred cccCCCCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHH
Confidence 34455677899999999999999999999854 889999999999999999999996 99999999999999
Q ss_pred HHHHHHHhhhcCcEEeecCC---CCCHHHHHHHHHhcCCcEEEEcccchHHHH
Q 048729 78 MYELQFGVPMSGAILNNINT---RLDAHTLSVLLQHSESKLVFVDHLHTYLLL 127 (330)
Q Consensus 78 ~~~~~la~~~~G~~~~~l~~---~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~ 127 (330)
+++++|||+++|++++|+++ .++.+++.++++..++++++++......+.
T Consensus 95 ~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~ 147 (480)
T 3t5a_A 95 YVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVV 147 (480)
T ss_dssp HHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHH
T ss_pred HHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHH
Confidence 99999999999999999998 778899999999999999999887665443
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.98 E-value=2.5e-31 Score=245.63 Aligned_cols=266 Identities=18% Similarity=0.251 Sum_probs=204.2
Q ss_pred ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--HHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729 41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNV--PSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV 118 (330)
Q Consensus 41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~--~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~ 118 (330)
+|.+.+...+..+++.+...|+.++|+++.+.|.+ ...+...++++..|+.+++++. .+++.+...+++.++++++.
T Consensus 112 ~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~~ 190 (443)
T 2y4o_A 112 YTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSG-GQTEKQVQLIRDFEPKIILV 190 (443)
T ss_dssp ECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHCCSEEEE
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCC-CCHHHHHHHHHHhCCcEEEE
Confidence 89999988888888877788999999999999974 3345566888899999887765 47889999999999999999
Q ss_pred cccchHHHHHHhc---------cCc------------hHHHHhhccCC---cccCc------------------------
Q 048729 119 DHLHTYLLLEALS---------LFP------------QRARLKARQGV---KTVGL------------------------ 150 (330)
Q Consensus 119 ~~~~~~~~~~~~~---------~~~------------~~~~~~~~~G~---~~~g~------------------------ 150 (330)
.|.++..+..... .+. ....+....|. ..||+
T Consensus 191 ~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~~g~~~~~~ 270 (443)
T 2y4o_A 191 TPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVETKDGPVIWED 270 (443)
T ss_dssp CHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTTCCSEEECTT
T ss_pred CHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCCCCceEEccC
Confidence 9988877654321 110 00111000111 11222
Q ss_pred -eeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecC-ceE-----EEEecCC
Q 048729 151 -AEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHAD-GYV-----EIKDRSK 223 (330)
Q Consensus 151 -te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~-G~l-----~~~GR~d 223 (330)
++++|+|+++|++++.+ +.|||+++|.. ...+. ++||+|||+|+++++ |++ +++||.|
T Consensus 271 ~~~~~i~d~~~g~~~~~G--~~Gel~v~~~t------------~~~~p-~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~ 335 (443)
T 2y4o_A 271 HFYPEIIDPVTGEVLPDG--SQGELVFTSLT------------KEAMP-VIRYRTRDLTALLPPTARAMRRLAKITGRSD 335 (443)
T ss_dssp TEEEEEECTTTCCBCCTT--CCEEEEEEESS------------CSSSC-CSSEEEEEEECEECCSSSSSCEECCCCEESS
T ss_pred CeEEEEEcCCCCCCCCCC--CceEEEEeCCC------------cccCh-hheeecCCEEEEcCCCCCCccccCccccccC
Confidence 26677786578999988 88999999831 22232 789999999999999 987 8999999
Q ss_pred CeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecC--CcccCCCCCHHHHHHHHHhcCCCC-CCC
Q 048729 224 DVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKR--DLELTKKPTEKEIIEYCRARLPRY-MVP 300 (330)
Q Consensus 224 d~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~l~~~l~~~l~~~-~~p 300 (330)
|+||++|++|+|.+||++|.++|+|.++++++..++..++.+.++|++.+ +... ...+.+++.+.|+++|+.+ .+|
T Consensus 336 d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~p 414 (443)
T 2y4o_A 336 DMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAASV-TDGERAALARELQHRIKTMVGVS 414 (443)
T ss_dssp CCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTTC-CHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcccccc-hhhHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999998876655678889998875 2110 0034578999999999876 488
Q ss_pred ceEEEc--cCCCCCCCCcccHHHHH
Q 048729 301 RKVVFS--EELPKTSTGKIQKYLLR 323 (330)
Q Consensus 301 ~~~~~v--~~lP~t~~GKv~r~~l~ 323 (330)
..+.++ ++||+|++||++|...+
T Consensus 415 ~~v~~v~~~~lP~t~~GKi~r~~~~ 439 (443)
T 2y4o_A 415 SGVTVLAAGGIPATATGKARRVIDR 439 (443)
T ss_dssp CEEEEECTTCSCCCTTSCCCSEEEC
T ss_pred eEEEEeCCCcccCccCCcceEEEec
Confidence 888877 59999999999996543
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.97 E-value=3e-30 Score=237.96 Aligned_cols=263 Identities=17% Similarity=0.220 Sum_probs=202.9
Q ss_pred ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--HHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729 41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNV--PSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV 118 (330)
Q Consensus 41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~--~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~ 118 (330)
+|++.+...+..+++.+...|+.++|+++.+.|.+ ...+...++++..|+.+++++. .+++.+...+++.++++++.
T Consensus 110 ~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~~ 188 (437)
T 2y27_A 110 YTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDIIMV 188 (437)
T ss_dssp ECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSEEEE
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCEEEE
Confidence 89999988888888877788999999999999963 3334556888899999987665 47899999999999999999
Q ss_pred cccchHHHHHHhc---------cCc------------hHHHHhhccCC---cccCce-----------------------
Q 048729 119 DHLHTYLLLEALS---------LFP------------QRARLKARQGV---KTVGLA----------------------- 151 (330)
Q Consensus 119 ~~~~~~~~~~~~~---------~~~------------~~~~~~~~~G~---~~~g~t----------------------- 151 (330)
.|.++..+..... .+. ....+....|. ..||+|
T Consensus 189 ~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~~g~~~~~~ 268 (437)
T 2y27_A 189 TPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVETKDGPTIWED 268 (437)
T ss_dssp CHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTTCSSCEECTT
T ss_pred CHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCCCCceeEccC
Confidence 9998877654321 110 00111111111 112222
Q ss_pred --eEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEec-CceE-----EEEecCC
Q 048729 152 --EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHA-DGYV-----EIKDRSK 223 (330)
Q Consensus 152 --e~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~-~G~l-----~~~GR~d 223 (330)
+++|+|+++|++++.+ +.|||+++|. +...+. ++||+|||+|++|+ +|++ ++.||.|
T Consensus 269 ~~~~~i~d~~~g~~~~~g--~~Gel~v~~~------------t~~~~~-~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~ 333 (437)
T 2y27_A 269 HFYPEIIDPETGEVLPDG--ELGELVFTSL------------TKEALP-IIRYRTRDLTRLLPGTARTMRRMEKITGRSD 333 (437)
T ss_dssp TEEEEEECTTTCCBCCTT--CCEEEEEEES------------SCSSSC-CCSEEEEEEECEECCSSSSSCEECCCCEEGG
T ss_pred ceEEEEEcCCCCCCCCCC--CccEEEEecC------------CcCCch-hheeecCCEEEEeCCCCCCccccCccccccC
Confidence 5667776578899888 8899999983 122332 78999999999999 6985 9999999
Q ss_pred CeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCC-CCCce
Q 048729 224 DVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRY-MVPRK 302 (330)
Q Consensus 224 d~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~p~~ 302 (330)
|+||++|++|+|.+||++|.++|+|.++++++..++..++.+.++|++.++... ...+.+++.+.++++|+.+ .+|..
T Consensus 334 d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~p~~ 412 (437)
T 2y27_A 334 DMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETAP-DTAAIQVAKQALAYDIKSLIGVTAV 412 (437)
T ss_dssp GCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTTT-CHHHHHHHHHHHHHHHHHHHCCCEE
T ss_pred CeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCccc-hhhhHHHHHHHHHHHHHHhcCCceE
Confidence 999999999999999999999999999998888766667789999988765320 0023478899999999888 58988
Q ss_pred EEEc--cCCCCCCCCcccHHH
Q 048729 303 VVFS--EELPKTSTGKIQKYL 321 (330)
Q Consensus 303 ~~~v--~~lP~t~~GKv~r~~ 321 (330)
+.++ ++||+|+ ||++|..
T Consensus 413 v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 413 INVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp EEECCTTCSCCCS-SSCCCEE
T ss_pred EEEeCCCCccCCC-CcceEEE
Confidence 8888 5999999 9999864
No 36
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.64 E-value=1.3e-16 Score=117.59 Aligned_cols=98 Identities=18% Similarity=0.226 Sum_probs=72.0
Q ss_pred ecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCC-C
Q 048729 220 DRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRY-M 298 (330)
Q Consensus 220 GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~ 298 (330)
.|.||+||++|.||+|.+||++|.+||+|.++++++..++.+++.+.++++..++..... ...+++.+.+++++..+ .
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~-~~~~~l~~~i~~~l~~~~g 79 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDY-GRLQALTREITRQLKDEIL 79 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCH-HHHHHHHHHHHHHHHHHHS
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeecccccc-chhhhhHHHHHHHHHHHhC
Confidence 499999999999999999999999999999999999998888889999999887654110 12234444454444322 2
Q ss_pred CCceEEEc--cCCCCCCCCcccH
Q 048729 299 VPRKVVFS--EELPKTSTGKIQK 319 (330)
Q Consensus 299 ~p~~~~~v--~~lP~t~~GKv~r 319 (330)
+|..+.++ ++||+| +||++|
T Consensus 80 v~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 80 VTPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp SCCEEEEECTTCSCCC----CCC
T ss_pred CccceEEEcCCeecCC-CCCcch
Confidence 44455555 489999 799987
No 37
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.64 E-value=1.6e-16 Score=116.90 Aligned_cols=99 Identities=19% Similarity=0.245 Sum_probs=71.9
Q ss_pred ecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCC-CCC
Q 048729 220 DRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLP-RYM 298 (330)
Q Consensus 220 GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~-~~~ 298 (330)
||.||+|+++|.+++|.+||++|.+||+|.++++++..++.+++.+.+++++ ++.......+.+++.+.+++.+. .+.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~~~ 79 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDEIL 79 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHhhC
Confidence 8999999999999999999999999999998888888777677889999998 55321000123455555555443 234
Q ss_pred CCceEEEcc--CCCCCCCCcccHH
Q 048729 299 VPRKVVFSE--ELPKTSTGKIQKY 320 (330)
Q Consensus 299 ~p~~~~~v~--~lP~t~~GKv~r~ 320 (330)
++..+.+++ +||+| +||++|.
T Consensus 80 ~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 80 VTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp SCCEEEEECTTCSCCC----CCCE
T ss_pred CceEEEEECCCCccCC-CCceEEE
Confidence 444788887 99999 9999873
No 38
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.03 E-value=8.9e-10 Score=98.71 Aligned_cols=172 Identities=12% Similarity=-0.021 Sum_probs=110.5
Q ss_pred ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC-CHH-HHHHHHHhhhcCcEEeecCCCCCHH----------------
Q 048729 41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPN-VPS-MYELQFGVPMSGAILNNINTRLDAH---------------- 102 (330)
Q Consensus 41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~-~~~-~~~~~la~~~~G~~~~~l~~~~~~~---------------- 102 (330)
+|.+.+...+...++.+...|+.++|+++.+.|. .+. -+...++++..|+.+++ ..+++.
T Consensus 111 ~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~--~~~dp~~~~~~~~~~~~~~~~~ 188 (369)
T 3hgu_A 111 AYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS--IDIDPRWVKRSLSEGDTATVRK 188 (369)
T ss_dssp ECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC--CCCCHHHHHHHHHTTCHHHHHH
T ss_pred ECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC--ccCChHHHHHhhcccchhhhHH
Confidence 8999988888777777777899999999999998 332 23444555888995544 334555
Q ss_pred -------HHHHHHHhcCCcEEEEcccchHHHHHHhc-------cCc---------------hHH--HH------------
Q 048729 103 -------TLSVLLQHSESKLVFVDHLHTYLLLEALS-------LFP---------------QRA--RL------------ 139 (330)
Q Consensus 103 -------~l~~~l~~~~~~~i~~~~~~~~~~~~~~~-------~~~---------------~~~--~~------------ 139 (330)
.+...+++.++++++..|.++..+.+... .+. ... .+
T Consensus 189 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~T 268 (369)
T 3hgu_A 189 YTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGST 268 (369)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEG
T ss_pred HHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCch
Confidence 77779999999999999987766533211 000 001 00
Q ss_pred ---------hh-ccCCc------ccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEE
Q 048729 140 ---------KA-RQGVK------TVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFY 203 (330)
Q Consensus 140 ---------~~-~~G~~------~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~ 203 (330)
.. +.|.+ +++. +++|+|+++|++++.+ +.|||++++..... + --+|+
T Consensus 269 E~~~~~~~~~~~~~G~~~~~~~~~~~~-~v~ivD~~~g~~vp~G--~~GEl~vt~l~~~~------------~--l~ry~ 331 (369)
T 3hgu_A 269 SALGVSRSLLITSESQQVIYDSFSPFI-TYDVVDSITAQTVEYG--ERGNVIVTHLSPWA------------F--YPRVA 331 (369)
T ss_dssp GGTEEEEECCBCTTCSSCEEECCTTTE-EEEEECTTTCSBCCTT--CEEEEEEEEEETTE------------E--EEEEE
T ss_pred hhhcceeccccccCCCcccccCCCCCe-EEEEECCCCCcCCCCC--CceEEEEEEcCccc------------c--ccccc
Confidence 11 25667 6774 8899998789999998 89999998732110 1 12589
Q ss_pred eCceEEEecC---------ceEEEEecCCCeEEeCCe
Q 048729 204 TGDIGVMHAD---------GYVEIKDRSKDVIISGGE 231 (330)
Q Consensus 204 TGD~~~~~~~---------G~l~~~GR~dd~ik~~G~ 231 (330)
|||++.+.+. ..+..++|.++..|+.|.
T Consensus 332 tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 332 ERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred CCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 9999987543 246778888988888874
No 39
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=97.27 E-value=0.00037 Score=65.36 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=48.7
Q ss_pred eecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEec----CceEEEEecCCCeEEeCCeecCHHHHHHHHhc
Q 048729 170 SLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHA----DGYVEIKDRSKDVIISGGENICSAEVESVLYS 244 (330)
Q Consensus 170 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~----~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~ 244 (330)
+.+||+++... |.| .|++||+++++. ...+.|+||.++++.+.|++++..+||+++.+
T Consensus 397 ~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~ 458 (609)
T 4b2g_A 397 KEYELVITTYA---GLY--------------RYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDN 458 (609)
T ss_dssp CEEEEEEECTT---SCC--------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred CeEEEehhhhh---hhh--------------heecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHH
Confidence 66888887642 333 299999999874 47899999999999999999999999999874
No 40
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=96.92 E-value=0.0032 Score=58.83 Aligned_cols=43 Identities=9% Similarity=0.048 Sum_probs=39.3
Q ss_pred EEeCceEEEecC----ceEEEEecCCCeEEeCCeecCHHHHHHHHhc
Q 048729 202 FYTGDIGVMHAD----GYVEIKDRSKDVIISGGENICSAEVESVLYS 244 (330)
Q Consensus 202 ~~TGD~~~~~~~----G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~ 244 (330)
|++||++++..- ..+.|+||.++++.+.|++++..+||+++.+
T Consensus 407 Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~ 453 (581)
T 4epl_A 407 YRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVES 453 (581)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred EEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHH
Confidence 999999998752 6799999999999999999999999999875
No 41
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=96.88 E-value=0.0012 Score=61.88 Aligned_cols=45 Identities=11% Similarity=0.147 Sum_probs=40.6
Q ss_pred EEeCceEEEec----CceEEEEecCCCeEEeCCeecCHHHHHHHHhcCc
Q 048729 202 FYTGDIGVMHA----DGYVEIKDRSKDVIISGGENICSAEVESVLYSIT 246 (330)
Q Consensus 202 ~~TGD~~~~~~----~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~ 246 (330)
|++||++++.. ...+.|.||.++++.+.|++++..+||+++.+..
T Consensus 400 Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a~ 448 (581)
T 4eql_A 400 MRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAK 448 (581)
T ss_dssp EECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC-
T ss_pred EEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHHH
Confidence 99999999976 4689999999999999999999999999998643
No 42
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=96.19 E-value=0.046 Score=50.38 Aligned_cols=96 Identities=10% Similarity=0.160 Sum_probs=72.5
Q ss_pred cCCCcEEE-eCC--------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCC
Q 048729 28 YTDCPSLV-YNN--------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINT 97 (330)
Q Consensus 28 ~p~~~a~~-~~~--------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~ 97 (330)
.|+.+|++ +++ -.+|++.+...+..... ..++.++|+++.++|.++.+ +..++.++..|+..+..+
T Consensus 161 ~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~- 236 (501)
T 3ipl_A 161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD- 236 (501)
T ss_dssp CTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred CCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-
Confidence 35667665 332 23899888766655544 45899999999999987554 445678888999987665
Q ss_pred CCCHHHHHHHHHhcCCcEEEEcccchHHHH
Q 048729 98 RLDAHTLSVLLQHSESKLVFVDHLHTYLLL 127 (330)
Q Consensus 98 ~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~ 127 (330)
.++++.+...+++.+++.++..|..+..+.
T Consensus 237 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 266 (501)
T 3ipl_A 237 KFNAEQILTMIKNERITHISLVPQTLNWLM 266 (501)
T ss_dssp SCCHHHHHHHHHHSCCCEEEECHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCcEEEchHHHHHHHH
Confidence 578999999999999999999887666554
No 43
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=95.96 E-value=0.076 Score=49.48 Aligned_cols=97 Identities=7% Similarity=-0.001 Sum_probs=73.3
Q ss_pred cCCCcEEE-eCCe--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHH---HHHHhhhcCcEEeec
Q 048729 28 YTDCPSLV-YNNT--------TYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYE---LQFGVPMSGAILNNI 95 (330)
Q Consensus 28 ~p~~~a~~-~~~~--------~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~---~~la~~~~G~~~~~l 95 (330)
.|+.+|++ ++++ .+|++.+...+..... ..++.++|+++..+|.++.+-. .+++++..|+..+..
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 256 (539)
T 1mdb_A 180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS 256 (539)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence 45666655 4332 3899988766655544 3488999999999998755432 478888999998765
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEEcccchHHHHH
Q 048729 96 NTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLE 128 (330)
Q Consensus 96 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~ 128 (330)
+ ..+++.+...+++.++++++..|..+..+..
T Consensus 257 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 288 (539)
T 1mdb_A 257 P-SPSPDDAFPLIEREKVTITALVPPLAMVWMD 288 (539)
T ss_dssp S-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHh
Confidence 5 4788999999999999999999988776543
No 44
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=95.27 E-value=0.14 Score=47.67 Aligned_cols=95 Identities=11% Similarity=0.084 Sum_probs=72.5
Q ss_pred CCCcEEE-eCCe--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHH---HHHHhhhcCcEEeecC
Q 048729 29 TDCPSLV-YNNT--------TYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYE---LQFGVPMSGAILNNIN 96 (330)
Q Consensus 29 p~~~a~~-~~~~--------~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~---~~la~~~~G~~~~~l~ 96 (330)
++.+|++ ++++ .+|++.+...+...+.. .++.++|+++.++|.++.+-. .+++.+..|+.++..+
T Consensus 190 ~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~ 266 (544)
T 3o83_A 190 ADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAP 266 (544)
T ss_dssp TTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS
T ss_pred ccceEEEEECCCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECC
Confidence 5666665 4332 38999887776665544 589999999999997755432 4688889999887665
Q ss_pred CCCCHHHHHHHHHhcCCcEEEEcccchHHHH
Q 048729 97 TRLDAHTLSVLLQHSESKLVFVDHLHTYLLL 127 (330)
Q Consensus 97 ~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~ 127 (330)
...+..+...+++.+++.+...|..+..+.
T Consensus 267 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 296 (544)
T 3o83_A 267 -NPEPLNCFSIIQRHQVNMASLVPSAVIMWL 296 (544)
T ss_dssp -SCCHHHHHHHHHHHTCCEEEECHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHCCCEEEechHHHHHHH
Confidence 468889999999999999999998776654
No 45
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=95.24 E-value=0.059 Score=50.37 Aligned_cols=95 Identities=15% Similarity=0.131 Sum_probs=68.7
Q ss_pred CCcEEEe-CC--------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeecCCC
Q 048729 30 DCPSLVY-NN--------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNINTR 98 (330)
Q Consensus 30 ~~~a~~~-~~--------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l~~~ 98 (330)
+.+|++. ++ -.+|++.+...+......+...++.++|+++.++|.++.+ ...+++++ .|+..+..+ .
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~ 269 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-K 269 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-C
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-C
Confidence 6666664 32 2389988876665554433336889999999999987554 33456777 999887665 5
Q ss_pred CCHHHHHHHHHhcCCcEEEEcccchHHH
Q 048729 99 LDAHTLSVLLQHSESKLVFVDHLHTYLL 126 (330)
Q Consensus 99 ~~~~~l~~~l~~~~~~~i~~~~~~~~~~ 126 (330)
++++.+...+++.++++++..|.++..+
T Consensus 270 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l 297 (548)
T 2d1s_A 270 FDEETFLKTLQDYKCTSVILVPTLFAIL 297 (548)
T ss_dssp CCHHHHHHHHHHTTEEEEEECHHHHHHH
T ss_pred CCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence 7889999999999999998877655443
No 46
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=95.13 E-value=0.069 Score=49.88 Aligned_cols=84 Identities=11% Similarity=0.041 Sum_probs=64.0
Q ss_pred ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEc
Q 048729 41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVD 119 (330)
Q Consensus 41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~ 119 (330)
+|++.+...+......+...++.++|+++.++|.++.+ +...++.+..|+..+..+ ...++.+...+++.+++.++..
T Consensus 210 ~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~ 288 (550)
T 3rix_A 210 LPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-RFEEELFLRSLQDYKIQSALLV 288 (550)
T ss_dssp EEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCSEEEEC
T ss_pred hhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHcCCeEEEeC
Confidence 88888876655544433335788999999999988654 445677888999887665 5788999999999999999987
Q ss_pred ccchHH
Q 048729 120 HLHTYL 125 (330)
Q Consensus 120 ~~~~~~ 125 (330)
|.++..
T Consensus 289 P~~~~~ 294 (550)
T 3rix_A 289 PTLFSF 294 (550)
T ss_dssp HHHHHH
T ss_pred cHHHHH
Confidence 765543
No 47
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=94.86 E-value=0.25 Score=45.66 Aligned_cols=81 Identities=14% Similarity=0.099 Sum_probs=62.1
Q ss_pred ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH--HHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729 41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMY--ELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV 118 (330)
Q Consensus 41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~--~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~ 118 (330)
+|++.+...+..++.. .++.++|+++..+|.++.+. ..+++++ .|+..+..+ .+.+..+...+.+.+++++..
T Consensus 190 ~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~ 264 (517)
T 3r44_A 190 HTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISMP-QFDATKVWSLIVEERVCIGGA 264 (517)
T ss_dssp EEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEECS-SCCHHHHHHHHHHTTCCEEEE
T ss_pred eeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEeC-CCCHHHHHHHHHHhCCeEEEe
Confidence 8999887766665544 58999999999999886543 3345555 888887665 578899999999999999988
Q ss_pred cccchHHH
Q 048729 119 DHLHTYLL 126 (330)
Q Consensus 119 ~~~~~~~~ 126 (330)
.|..+..+
T Consensus 265 ~P~~~~~l 272 (517)
T 3r44_A 265 VPAILNFM 272 (517)
T ss_dssp CHHHHHHH
T ss_pred HHHHHHHH
Confidence 87665544
No 48
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=94.68 E-value=0.078 Score=48.99 Aligned_cols=80 Identities=15% Similarity=0.084 Sum_probs=62.2
Q ss_pred ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCC--CCHHHHHHHHHhcCCcEEE
Q 048729 41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTR--LDAHTLSVLLQHSESKLVF 117 (330)
Q Consensus 41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~--~~~~~l~~~l~~~~~~~i~ 117 (330)
+|++.+...+..... ..++.++|+++.++|.++.+ +..+++.+..|+..+.++.. ..+..+...+++.++++++
T Consensus 164 ~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~ 240 (512)
T 3fce_A 164 ITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWT 240 (512)
T ss_dssp EEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEE
T ss_pred EehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEE
Confidence 899888766555443 46899999999999987654 44578888999998877653 5678899999999999988
Q ss_pred Ecccch
Q 048729 118 VDHLHT 123 (330)
Q Consensus 118 ~~~~~~ 123 (330)
..|.++
T Consensus 241 ~~P~~~ 246 (512)
T 3fce_A 241 STPSFA 246 (512)
T ss_dssp ECHHHH
T ss_pred ecHHHH
Confidence 776544
No 49
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=94.65 E-value=0.085 Score=48.77 Aligned_cols=81 Identities=11% Similarity=0.017 Sum_probs=62.5
Q ss_pred ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCC--CCHHHHHHHHHhcCCcEEE
Q 048729 41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTR--LDAHTLSVLLQHSESKLVF 117 (330)
Q Consensus 41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~--~~~~~l~~~l~~~~~~~i~ 117 (330)
+|++.+...+..+.. ..++.++|+++.+.|.++.+ +..+++++..|+..+..+.. ..+..+...+++.++++++
T Consensus 163 ~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~ 239 (511)
T 3e7w_A 163 ISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWT 239 (511)
T ss_dssp EEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEE
T ss_pred EcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEE
Confidence 898888766655443 46889999999999988655 44578889999988776642 5678889999999999988
Q ss_pred EcccchH
Q 048729 118 VDHLHTY 124 (330)
Q Consensus 118 ~~~~~~~ 124 (330)
..|.++.
T Consensus 240 ~~P~~~~ 246 (511)
T 3e7w_A 240 STPSFVQ 246 (511)
T ss_dssp ECHHHHH
T ss_pred ecHHHHH
Confidence 8775543
No 50
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=94.57 E-value=0.14 Score=47.72 Aligned_cols=87 Identities=17% Similarity=0.155 Sum_probs=65.3
Q ss_pred ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEc
Q 048729 41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVD 119 (330)
Q Consensus 41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~ 119 (330)
+|++.+...+.... .....++.++|+++..+|..+.+ +...+.++..|+..+..+..++++.+...+++.++++++..
T Consensus 196 ~sh~~l~~~~~~~~-~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~ 274 (541)
T 1v25_A 196 YSHRALVLHSLAAS-LVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGV 274 (541)
T ss_dssp EEHHHHHHHHHHTT-STTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEEC
T ss_pred eehHHHHHHHhhhh-hcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecc
Confidence 88888754433211 11245788999999999987544 33457778889988877767789999999999999999999
Q ss_pred ccchHHHHH
Q 048729 120 HLHTYLLLE 128 (330)
Q Consensus 120 ~~~~~~~~~ 128 (330)
|..+..+..
T Consensus 275 P~~~~~l~~ 283 (541)
T 1v25_A 275 PTVWLALAD 283 (541)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHh
Confidence 988776643
No 51
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=94.56 E-value=0.14 Score=47.09 Aligned_cols=95 Identities=16% Similarity=0.186 Sum_probs=69.8
Q ss_pred cCCCcEEE-eCCe--------eecHHHHHHHHHHHHHHHHHcCC--CCCCEEEEECCCCHHHH--HHHHHhhhcCcEEee
Q 048729 28 YTDCPSLV-YNNT--------TYTWSETHRRCLQVASSLSSVGI--QRGHVVSVVAPNVPSMY--ELQFGVPMSGAILNN 94 (330)
Q Consensus 28 ~p~~~a~~-~~~~--------~~T~~el~~~~~~~a~~L~~~g~--~~gd~V~~~~~~~~~~~--~~~la~~~~G~~~~~ 94 (330)
.|+.+|++ ++++ .+|++.+...+..+.. ..++ .++|+++..+|.++.+- ..+++.+..|+..+.
T Consensus 151 ~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~---~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~ 227 (504)
T 1t5h_X 151 EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST---QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVV 227 (504)
T ss_dssp CTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHH---TTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEE
T ss_pred CCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHH---hhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEe
Confidence 46677665 4332 3888887766555443 4577 78999999999876553 456888899999886
Q ss_pred cCCCCCHHHHHHHHHhcCCcEEEEcccchHHH
Q 048729 95 INTRLDAHTLSVLLQHSESKLVFVDHLHTYLL 126 (330)
Q Consensus 95 l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~ 126 (330)
.+ .+.+..+...+++.+++.++..|..+..+
T Consensus 228 ~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 258 (504)
T 1t5h_X 228 VE-EFRPVDALQLVQQEQVTSLFATPTHLDAL 258 (504)
T ss_dssp CS-SCCHHHHHHHHHHHTCCEEECCHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHhCCeEEEeChHHHHHH
Confidence 65 47788999999999999999887766544
No 52
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=94.50 E-value=0.13 Score=48.37 Aligned_cols=94 Identities=5% Similarity=-0.037 Sum_probs=68.7
Q ss_pred cCCCcEEE-eCCe--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHH--HHHHhhhcCcEEeecC
Q 048729 28 YTDCPSLV-YNNT--------TYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYE--LQFGVPMSGAILNNIN 96 (330)
Q Consensus 28 ~p~~~a~~-~~~~--------~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~--~~la~~~~G~~~~~l~ 96 (330)
.|+.+|++ ++++ .+|++.+...+..... ..++.++|+++.++|.++.+-. .+++++..|+..+..+
T Consensus 165 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~ 241 (590)
T 3kxw_A 165 KSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMS 241 (590)
T ss_dssp CTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECC
T ss_pred CCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeC
Confidence 35666665 4332 3899988777666554 4589999999999999876533 3688889999888776
Q ss_pred CCC---CHHHHHHHHHhcCCcEEEEcccchH
Q 048729 97 TRL---DAHTLSVLLQHSESKLVFVDHLHTY 124 (330)
Q Consensus 97 ~~~---~~~~l~~~l~~~~~~~i~~~~~~~~ 124 (330)
+.. .+..+...+++.+++++...+..+.
T Consensus 242 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~ 272 (590)
T 3kxw_A 242 PFSFLQNPLSWLKHITKYKATISGSPNFAYD 272 (590)
T ss_dssp HHHHHHCTHHHHHHHHHHTCSEEEECTHHHH
T ss_pred HHHHHHCHHHHHHHHHHhCCeeecCChhHHH
Confidence 432 5678888999999998887765443
No 53
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=94.39 E-value=0.26 Score=45.44 Aligned_cols=81 Identities=6% Similarity=-0.105 Sum_probs=60.1
Q ss_pred ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729 41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV 118 (330)
Q Consensus 41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~ 118 (330)
+|.+.+...+..+.. ..++.++|+++.++|.++.+ ...+.+++..|+.+++ . ..++..+...+++.++++++.
T Consensus 180 ~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~-~-~~~~~~~~~~i~~~~~t~~~~ 254 (509)
T 3ivr_A 180 ISQGNLLIAQSSLVD---AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIA-A-KFDPAQAARDIEAHKVTVMAE 254 (509)
T ss_dssp EEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC-S-SCCHHHHHHHHHHHTCCEEEE
T ss_pred EehHHHHHHHHHHHH---hhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEe-c-ccCHHHHHHHHHHHCCcEEEe
Confidence 899888766665554 45899999999999987654 3333445555555544 3 678999999999999999998
Q ss_pred cccchHHH
Q 048729 119 DHLHTYLL 126 (330)
Q Consensus 119 ~~~~~~~~ 126 (330)
.|..+..+
T Consensus 255 ~p~~~~~l 262 (509)
T 3ivr_A 255 FAPMLGNI 262 (509)
T ss_dssp ETTHHHHH
T ss_pred cHHHHHHH
Confidence 87766544
No 54
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=94.10 E-value=0.48 Score=44.86 Aligned_cols=82 Identities=10% Similarity=0.013 Sum_probs=63.1
Q ss_pred ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HH-HHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEE
Q 048729 41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM--YE-LQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVF 117 (330)
Q Consensus 41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~--~~-~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~ 117 (330)
+|++.+...+...... .++.++|+++.++|.++.+ .. .+++++..|+..+..+. .++..+...+++.+++++.
T Consensus 204 ~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~ 279 (617)
T 3rg2_A 204 RTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAAD-PSATLCFPLIEKHQVNVTA 279 (617)
T ss_dssp EEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSS-CCHHHHHHHHHHTTCCEEE
T ss_pred hhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCC-CCHHHHHHHHHHhCCcEEE
Confidence 8999887766665544 4889999999999976544 32 46888888998876654 5788888899999999999
Q ss_pred EcccchHHH
Q 048729 118 VDHLHTYLL 126 (330)
Q Consensus 118 ~~~~~~~~~ 126 (330)
..|..+..+
T Consensus 280 ~~P~~~~~l 288 (617)
T 3rg2_A 280 LVPPAVSLW 288 (617)
T ss_dssp ECHHHHHHH
T ss_pred cchHHHHHH
Confidence 887655443
No 55
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=93.60 E-value=0.29 Score=45.60 Aligned_cols=82 Identities=13% Similarity=0.114 Sum_probs=64.9
Q ss_pred ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEc
Q 048729 41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVD 119 (330)
Q Consensus 41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~ 119 (330)
+|++.+...+..++.. .++.++|+++.++|..+.+ +..++.++..|+..+..+ .++++.+...+++.++++++..
T Consensus 200 ~sh~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~ 275 (549)
T 3g7s_A 200 LTHFNLAANALQLAVA---TGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMG-MFNQEMLAENIEKYKGTFSWAV 275 (549)
T ss_dssp EEHHHHHHHHHHHHHH---HCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEES-SCCHHHHHHHHHHTTCCEEEEC
T ss_pred EcHHHHHHHHHHHHHH---cCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcC-CCCHHHHHHHHHHhCCeEEEeC
Confidence 8999998777766654 4889999999999987554 334677778899887665 6788999999999999999988
Q ss_pred ccchHHH
Q 048729 120 HLHTYLL 126 (330)
Q Consensus 120 ~~~~~~~ 126 (330)
|..+..+
T Consensus 276 P~~~~~l 282 (549)
T 3g7s_A 276 PPALNVL 282 (549)
T ss_dssp HHHHHHH
T ss_pred CHHHHHH
Confidence 7655444
No 56
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=93.57 E-value=0.15 Score=47.22 Aligned_cols=81 Identities=15% Similarity=-0.050 Sum_probs=60.2
Q ss_pred ecHHHH-HHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH--HHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEE
Q 048729 41 YTWSET-HRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMY--ELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVF 117 (330)
Q Consensus 41 ~T~~el-~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~--~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~ 117 (330)
+|++.+ ....... ....++.++|+++.++|.++.+- ..++..+..|+..+.++...+++.+...+++.++++++
T Consensus 203 ~sh~~l~~~~~~~~---~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~ 279 (529)
T 2v7b_A 203 HTHANLYWTAELYA---KPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFY 279 (529)
T ss_dssp EEHHHHHHHHHHTC---CCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEE
T ss_pred EEhhHHHHHHHHHh---hhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEE
Confidence 788877 2222111 11358899999999999886653 34577888999988776778899999999999999998
Q ss_pred EcccchH
Q 048729 118 VDHLHTY 124 (330)
Q Consensus 118 ~~~~~~~ 124 (330)
..|..+.
T Consensus 280 ~~P~~~~ 286 (529)
T 2v7b_A 280 GVPTLYA 286 (529)
T ss_dssp ECHHHHH
T ss_pred ecHHHHH
Confidence 8776544
No 57
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=93.24 E-value=0.14 Score=47.69 Aligned_cols=96 Identities=13% Similarity=0.050 Sum_probs=68.3
Q ss_pred cCCCcEEE-eC-C-------eeecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeec
Q 048729 28 YTDCPSLV-YN-N-------TTYTWSETHRRCLQVASSLS-SVGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNI 95 (330)
Q Consensus 28 ~p~~~a~~-~~-~-------~~~T~~el~~~~~~~a~~L~-~~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l 95 (330)
.|+.+|++ ++ | -.+|++.+...+........ ..++.++|+++.++|....+ ...+++.+..|+..+..
T Consensus 176 ~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~ 255 (536)
T 3ni2_A 176 SPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIM 255 (536)
T ss_dssp CTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEEC
T ss_pred CccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEc
Confidence 35667665 32 2 23899888766554443322 45788999999999987544 34567888899988766
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEEcccchH
Q 048729 96 NTRLDAHTLSVLLQHSESKLVFVDHLHTY 124 (330)
Q Consensus 96 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~~ 124 (330)
+ ...+..+...+++.+++++...|.++.
T Consensus 256 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~ 283 (536)
T 3ni2_A 256 P-KFEIGSLLGLIEKYKVSIAPVVPPVMM 283 (536)
T ss_dssp S-SCCHHHHHHHHHHHTCCEEEECHHHHH
T ss_pred C-CCCHHHHHHHHHHhCCeEEEccHHHHH
Confidence 5 577889999999999999987765443
No 58
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=93.08 E-value=0.42 Score=44.81 Aligned_cols=69 Identities=12% Similarity=-0.025 Sum_probs=54.3
Q ss_pred HHcCCCCCCEEEEECCCCHHHH--HHHHHhhhcCcEEeecCC-CCCHHHHHHHHHhcCCcEEEEcccchHHH
Q 048729 58 SSVGIQRGHVVSVVAPNVPSMY--ELQFGVPMSGAILNNINT-RLDAHTLSVLLQHSESKLVFVDHLHTYLL 126 (330)
Q Consensus 58 ~~~g~~~gd~V~~~~~~~~~~~--~~~la~~~~G~~~~~l~~-~~~~~~l~~~l~~~~~~~i~~~~~~~~~~ 126 (330)
...++.++|+++.+.|.++.+- ..+++.+..|+..+..+. .+.+..+...+++.+++.++..|.++..+
T Consensus 240 ~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 311 (570)
T 3c5e_A 240 GWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRML 311 (570)
T ss_dssp TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHH
T ss_pred hhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHH
Confidence 4568899999999999886553 356788888998877653 77899999999999999998877655443
No 59
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=92.52 E-value=0.2 Score=46.89 Aligned_cols=78 Identities=12% Similarity=0.028 Sum_probs=58.6
Q ss_pred ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCC--CCHHHHHHHHHhcCCcEEE
Q 048729 41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTR--LDAHTLSVLLQHSESKLVF 117 (330)
Q Consensus 41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~--~~~~~l~~~l~~~~~~~i~ 117 (330)
+|++.+...+.... ...++.++|+++.+.|.++.. +..++..+..|+..+.++.. ..+..+...+++.+++++.
T Consensus 202 ~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~ 278 (563)
T 1amu_A 202 LEHKGISNLKVFFE---NSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVIT 278 (563)
T ss_dssp EESHHHHHHHHHHH---HTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEE
T ss_pred EehHHHHHHHHHHH---HhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEE
Confidence 88888765544333 356899999999999987654 34567788899988766542 5678899999999999888
Q ss_pred Eccc
Q 048729 118 VDHL 121 (330)
Q Consensus 118 ~~~~ 121 (330)
..|.
T Consensus 279 ~~P~ 282 (563)
T 1amu_A 279 LPPT 282 (563)
T ss_dssp ECHH
T ss_pred eCHH
Confidence 7654
No 60
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=92.18 E-value=0.63 Score=42.80 Aligned_cols=94 Identities=13% Similarity=0.075 Sum_probs=67.5
Q ss_pred cCCCcEEE-eCC--------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeecC
Q 048729 28 YTDCPSLV-YNN--------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNIN 96 (330)
Q Consensus 28 ~p~~~a~~-~~~--------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l~ 96 (330)
.|+.+|++ +++ -.+|++.+...+..+...+ ++.++|+++..+|....+ +..+++.+..|+.++..+
T Consensus 153 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~ 229 (505)
T 3nyq_A 153 DDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG 229 (505)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECS
T ss_pred CCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECC
Confidence 45666665 332 2389999887777666554 888999999999976443 345688889999887664
Q ss_pred CCCCHHHHHHHHHhcCCcEEEEcccchHHH
Q 048729 97 TRLDAHTLSVLLQHSESKLVFVDHLHTYLL 126 (330)
Q Consensus 97 ~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~ 126 (330)
.+.+..+...+ +.+++.++..|..+..+
T Consensus 230 -~~~~~~~~~~i-~~~~t~~~~~P~~~~~l 257 (505)
T 3nyq_A 230 -RFSTEGAAREL-NDGATMLFGVPTMYHRI 257 (505)
T ss_dssp -SCCHHHHHHHH-TTTCCEEEECHHHHHHH
T ss_pred -CCChHHHHHHH-hhCCeEEEehHHHHHHH
Confidence 56777777777 67889888887665443
No 61
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=92.07 E-value=0.38 Score=48.27 Aligned_cols=99 Identities=12% Similarity=0.072 Sum_probs=73.1
Q ss_pred cCCCcEEE-eCC--------eeecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeec
Q 048729 28 YTDCPSLV-YNN--------TTYTWSETHRRCLQVASSLS-SVGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNI 95 (330)
Q Consensus 28 ~p~~~a~~-~~~--------~~~T~~el~~~~~~~a~~L~-~~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l 95 (330)
.|+.+|++ +++ -.+|++.+...+........ ..++.++|+++.++|....+ ...++..+..|+..+..
T Consensus 223 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~ 302 (979)
T 3tsy_A 223 SPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIM 302 (979)
T ss_dssp CTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEEC
T ss_pred CccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEe
Confidence 46777766 332 23899888766554433222 45788999999999987544 34567888899988766
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEEcccchHHHH
Q 048729 96 NTRLDAHTLSVLLQHSESKLVFVDHLHTYLLL 127 (330)
Q Consensus 96 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~ 127 (330)
+ ...++.+...+++.+++++...|.++..+.
T Consensus 303 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 333 (979)
T 3tsy_A 303 P-KFEINLLLELIQRCKVTVAPMVPPIVLAIA 333 (979)
T ss_dssp S-SCCHHHHHHHHHHHTCCEEEECHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHhCCeEEEcHHHHHHHHH
Confidence 5 567899999999999999999998776654
No 62
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=92.04 E-value=0.5 Score=45.10 Aligned_cols=84 Identities=10% Similarity=-0.024 Sum_probs=61.1
Q ss_pred ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH--HHHHHhhhcCcEEeecCC---CCCHHHHHHHHHhcCCcE
Q 048729 41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMY--ELQFGVPMSGAILNNINT---RLDAHTLSVLLQHSESKL 115 (330)
Q Consensus 41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~--~~~la~~~~G~~~~~l~~---~~~~~~l~~~l~~~~~~~ 115 (330)
+|.+.+...+..... ...+++++|+++.++|.+..+. ..+++.+..|+..+..+. ..++..+..++++.++++
T Consensus 276 ~sh~~~~~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~ 353 (652)
T 1pg4_A 276 HTTGGYLVYAATTFK--YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNI 353 (652)
T ss_dssp EESHHHHHHHHHHHH--HHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSE
T ss_pred ECchHHHHHHHHHHH--HhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeE
Confidence 777776543322211 2468899999999999886553 456888999999887764 246788999999999999
Q ss_pred EEEcccchHHH
Q 048729 116 VFVDHLHTYLL 126 (330)
Q Consensus 116 i~~~~~~~~~~ 126 (330)
+++.|..+..+
T Consensus 354 ~~~~P~~~~~l 364 (652)
T 1pg4_A 354 LYTAPTAIRAL 364 (652)
T ss_dssp EEECHHHHHHH
T ss_pred EEeCHHHHHHH
Confidence 98877655443
No 63
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=91.62 E-value=0.45 Score=45.12 Aligned_cols=94 Identities=15% Similarity=0.115 Sum_probs=67.7
Q ss_pred cCCCcEEE-eCC--------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecC-
Q 048729 28 YTDCPSLV-YNN--------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNIN- 96 (330)
Q Consensus 28 ~p~~~a~~-~~~--------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~- 96 (330)
.|+.+|++ +++ -.+|++.+...+.. ....++.++|+++.++|.+++. +..++..+..|+..+..+
T Consensus 162 ~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 237 (620)
T 4dg8_A 162 AADQIAYINFSSGTTGRPKAIACTHAGITRLCLG----QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDL 237 (620)
T ss_dssp CTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS----CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCS
T ss_pred CCCCeEEEEECCCccccCeEEEEchHHHHHHHHH----HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCcc
Confidence 35666665 322 23888877543322 2346889999999999988765 445688888898877654
Q ss_pred CCCCHHHHHHHHHhcCCcEEEEcccchHH
Q 048729 97 TRLDAHTLSVLLQHSESKLVFVDHLHTYL 125 (330)
Q Consensus 97 ~~~~~~~l~~~l~~~~~~~i~~~~~~~~~ 125 (330)
...++..+...+++.+++.+...|.++..
T Consensus 238 ~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~ 266 (620)
T 4dg8_A 238 GPLDPGVLRQLIGERGADSAWLTASLFNT 266 (620)
T ss_dssp SSCCHHHHHHHHHTTCCCEEEEEHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCcEEEccHHHHHH
Confidence 46789999999999999999887765443
No 64
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=91.32 E-value=0.64 Score=42.70 Aligned_cols=89 Identities=8% Similarity=0.072 Sum_probs=60.9
Q ss_pred CCCcEEE-eCCe--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeecCC
Q 048729 29 TDCPSLV-YNNT--------TYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNINT 97 (330)
Q Consensus 29 p~~~a~~-~~~~--------~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l~~ 97 (330)
|+.+|++ ++++ .+|++.+...+..+... .++.++|+++..+|..+.+ ....+..+..|+..+.++
T Consensus 154 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~- 229 (503)
T 4fuq_A 154 ADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDY---WRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLP- 229 (503)
T ss_dssp TTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECS-
T ss_pred CCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHH---hCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcC-
Confidence 5666655 4332 38999887766665544 5889999999999986543 344566677788776655
Q ss_pred CCCHHHHHHHHHhcCCcEEEEcccch
Q 048729 98 RLDAHTLSVLLQHSESKLVFVDHLHT 123 (330)
Q Consensus 98 ~~~~~~l~~~l~~~~~~~i~~~~~~~ 123 (330)
.++++.+...++ ++++++..|.++
T Consensus 230 ~~~~~~~~~~i~--~~t~~~~~P~~~ 253 (503)
T 4fuq_A 230 KFDPDKILDLMA--RATVLMGVPTFY 253 (503)
T ss_dssp SCCHHHHHHHHT--TCCEEEECHHHH
T ss_pred CCCHHHHHHHHh--hcCEEEEHHHHH
Confidence 577888777776 677777665443
No 65
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=90.94 E-value=0.49 Score=44.17 Aligned_cols=93 Identities=8% Similarity=0.066 Sum_probs=66.4
Q ss_pred CCCcEEEe-CC--------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeecCC
Q 048729 29 TDCPSLVY-NN--------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNINT 97 (330)
Q Consensus 29 p~~~a~~~-~~--------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l~~ 97 (330)
|+.+|++. ++ -.+|++.+...+..+... ..++.++|+++.++|.++.+ +..+++.+..|+..+.+..
T Consensus 175 ~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~--~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~ 252 (576)
T 3gqw_A 175 PNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHD--GIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRT 252 (576)
T ss_dssp TTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHT--TSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCH
T ss_pred CCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhc--ccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcch
Confidence 56777664 32 238998886655544322 26889999999999988654 4456778888888776653
Q ss_pred ---CCCHHHHHHHHHhcCCcEEEEcccch
Q 048729 98 ---RLDAHTLSVLLQHSESKLVFVDHLHT 123 (330)
Q Consensus 98 ---~~~~~~l~~~l~~~~~~~i~~~~~~~ 123 (330)
...+..+...+++.++++++..|..+
T Consensus 253 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~~ 281 (576)
T 3gqw_A 253 QDFAMRPLQWLKLISKNRGTVSVAPPFGY 281 (576)
T ss_dssp HHHHHCTTHHHHHHHHTTCCEEEECHHHH
T ss_pred hHhhhCHHHHHHHHHHhCCeEEEcCHHHH
Confidence 24567888899999999988877544
No 66
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=90.90 E-value=0.58 Score=43.79 Aligned_cols=95 Identities=13% Similarity=0.030 Sum_probs=67.7
Q ss_pred cCCCcEEEe-CC--------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH-HHHHHHHhhhcCcEEeecCC
Q 048729 28 YTDCPSLVY-NN--------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPS-MYELQFGVPMSGAILNNINT 97 (330)
Q Consensus 28 ~p~~~a~~~-~~--------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~-~~~~~la~~~~G~~~~~l~~ 97 (330)
.|+.+|++. ++ -.+|++.+..... .....++.++|+++.++|.+++ ....+++.+..|+..+..+.
T Consensus 212 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 287 (570)
T 4gr5_A 212 GPEDVACVMFTSGSTGRPKGVMSPHRALTGTYL----GQDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSG 287 (570)
T ss_dssp CTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHS----SCCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSS
T ss_pred CCCCeEEEEECCcCCCCCeEEEEecHHHHHHHH----hhhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCC
Confidence 456677664 32 2388887743322 1234588999999999998753 45566788889998776653
Q ss_pred -CCCHHHHHHHHHhcCCcEEEEcccchHHH
Q 048729 98 -RLDAHTLSVLLQHSESKLVFVDHLHTYLL 126 (330)
Q Consensus 98 -~~~~~~l~~~l~~~~~~~i~~~~~~~~~~ 126 (330)
...+..+...+++.+++++...|..+..+
T Consensus 288 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 317 (570)
T 4gr5_A 288 QNPDPLEIGELVARHGVTMLQLSASLFNFL 317 (570)
T ss_dssp SSCCHHHHHHHHHHHTCCEEEEEHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence 57888999999999999999887655443
No 67
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=90.76 E-value=1 Score=43.04 Aligned_cols=82 Identities=6% Similarity=-0.082 Sum_probs=58.9
Q ss_pred ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH--HHHHHhhhcCcEEeecCC---CCCHHHHHHHHHhcCCcE
Q 048729 41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMY--ELQFGVPMSGAILNNINT---RLDAHTLSVLLQHSESKL 115 (330)
Q Consensus 41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~--~~~la~~~~G~~~~~l~~---~~~~~~l~~~l~~~~~~~ 115 (330)
+|.+.+...+..... ...+++++|++...++.+.... ..+++.+..|+..+..+. ..++..+..++++.++++
T Consensus 282 ~sh~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~ 359 (663)
T 1ry2_A 282 HSTAGYLLGALLTMR--YTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQ 359 (663)
T ss_dssp ECSHHHHHHHHHHHH--HHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSE
T ss_pred EchhHHHHHHHHHHH--HhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCE
Confidence 777776543322211 2578999999999999875543 456788999998887764 246788999999999999
Q ss_pred EEEcccchH
Q 048729 116 VFVDHLHTY 124 (330)
Q Consensus 116 i~~~~~~~~ 124 (330)
+++.|..+.
T Consensus 360 ~~~~Ps~~~ 368 (663)
T 1ry2_A 360 FYVAPTALR 368 (663)
T ss_dssp EEECHHHHH
T ss_pred EEecHHHHH
Confidence 988765443
No 68
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=90.00 E-value=0.53 Score=42.81 Aligned_cols=185 Identities=15% Similarity=0.126 Sum_probs=134.8
Q ss_pred cCCCcEEEe-CC--------eeecHHHHHHHHHHHHHHHHHcCCCC------CCEEEEECCCCHHH--HHHHHHhhhcCc
Q 048729 28 YTDCPSLVY-NN--------TTYTWSETHRRCLQVASSLSSVGIQR------GHVVSVVAPNVPSM--YELQFGVPMSGA 90 (330)
Q Consensus 28 ~p~~~a~~~-~~--------~~~T~~el~~~~~~~a~~L~~~g~~~------gd~V~~~~~~~~~~--~~~~la~~~~G~ 90 (330)
.++.+|++. ++ -.+|++.+...+..+...+ ++.+ +|+++.++|.++.+ +..+++.+..|+
T Consensus 181 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~---~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~ 257 (480)
T 3t5a_A 181 EYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY---FADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGY 257 (480)
T ss_dssp SCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH---CTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTC
T ss_pred CCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh---ccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCC
Confidence 355666653 32 2389999987777666554 5555 89999999988654 456788899999
Q ss_pred EEeecCCC---CCHHHHHHHHHhcCCcEEEEcccchHHHHHHh----c----cCc------------------hHHHH--
Q 048729 91 ILNNINTR---LDAHTLSVLLQHSESKLVFVDHLHTYLLLEAL----S----LFP------------------QRARL-- 139 (330)
Q Consensus 91 ~~~~l~~~---~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~----~----~~~------------------~~~~~-- 139 (330)
..+..++. ..+..+...+++.+++ +...|.++..+.... . .+. .....
T Consensus 258 ~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~ 336 (480)
T 3t5a_A 258 PAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFA 336 (480)
T ss_dssp CEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSG
T ss_pred ceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCHHHHHHHHHHHh
Confidence 88877643 3678889999999999 666666554443211 0 000 00000
Q ss_pred --------------------------------------------------------hhccCCcccCceeEEEeCCCCCcc
Q 048729 140 --------------------------------------------------------KARQGVKTVGLAEVDVVNPETGES 163 (330)
Q Consensus 140 --------------------------------------------------------~~~~G~~~~g~te~~i~d~~~g~~ 163 (330)
..++|.|++ . +++|+|+++|++
T Consensus 337 ~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~-~~~ivd~~~g~~ 414 (480)
T 3t5a_A 337 RFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-P-IVRIVDSDTCIE 414 (480)
T ss_dssp GGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-S-EEEEEETTTTEE
T ss_pred hcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-C-EEEEEcCCCCcC
Confidence 113455555 4 788889867899
Q ss_pred cCCCCceecEEEEecCcccccccCCchhhhcccc-----------CCCeEEeCceEEEecCceEEEEec
Q 048729 164 VKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCIS-----------DNGWFYTGDIGVMHADGYVEIKDR 221 (330)
Q Consensus 164 ~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-----------~~g~~~TGD~~~~~~~G~l~~~GR 221 (330)
++.+ +.|||+|+|++++.|||++|+.+.+.|. .+|||+|||+|++| ||+++|+||
T Consensus 415 ~~~g--~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 415 CPDG--TVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp CCTT--BCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred CCCC--CEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 9998 8999999999999999999999998884 46799999999997 999999998
No 69
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=89.92 E-value=1.2 Score=40.96 Aligned_cols=82 Identities=6% Similarity=-0.058 Sum_probs=60.2
Q ss_pred ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCC--CCHHHHHHHHHhcCCcEEE
Q 048729 41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTR--LDAHTLSVLLQHSESKLVF 117 (330)
Q Consensus 41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~--~~~~~l~~~l~~~~~~~i~ 117 (330)
+|++.+...+..+.... ..++.++|+++...|.++.. +..++.++..|+..+..+.. ..+..+...+.+.+++++.
T Consensus 165 ~sh~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~ 243 (521)
T 3l8c_A 165 ISHDNLLSFTNWMIEDA-AFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWT 243 (521)
T ss_dssp EEHHHHHHHHHHHHHCT-TTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEE
T ss_pred EehHHHHHHHHHHhhcc-ccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEE
Confidence 89988876544333221 25788999999998887654 45567888899988776643 4678899999999999988
Q ss_pred Ecccch
Q 048729 118 VDHLHT 123 (330)
Q Consensus 118 ~~~~~~ 123 (330)
..|.++
T Consensus 244 ~~P~~~ 249 (521)
T 3l8c_A 244 STPSFA 249 (521)
T ss_dssp ECHHHH
T ss_pred eCCCHH
Confidence 776544
No 70
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=87.56 E-value=1.6 Score=40.94 Aligned_cols=68 Identities=10% Similarity=0.036 Sum_probs=54.3
Q ss_pred HcCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeecC-CCCCHHHHHHHHHhcCCcEEEEcccchHHH
Q 048729 59 SVGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNIN-TRLDAHTLSVLLQHSESKLVFVDHLHTYLL 126 (330)
Q Consensus 59 ~~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l~-~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~ 126 (330)
..++.++|++....+.+... +..+++.+..|+.+++.+ ..+.+..+...+++.+++.++..|..+..+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 330 (580)
T 3etc_A 260 WQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFL 330 (580)
T ss_dssp TSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHH
T ss_pred hhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHH
Confidence 46889999999998877544 334688899999888775 578899999999999999999887655443
No 71
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=86.10 E-value=1.4 Score=40.96 Aligned_cols=84 Identities=6% Similarity=-0.191 Sum_probs=62.1
Q ss_pred ecHHHHHHHHHHHHHHHH-----HcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCc
Q 048729 41 YTWSETHRRCLQVASSLS-----SVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESK 114 (330)
Q Consensus 41 ~T~~el~~~~~~~a~~L~-----~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~ 114 (330)
+|++.+...+..++..+. ...+...+++..+.+.++++ +..++..+..|+..+..+.....+.+...+++.+++
T Consensus 195 ~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t 274 (562)
T 3ite_A 195 VSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVT 274 (562)
T ss_dssp EEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCC
T ss_pred ECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCC
Confidence 899999888877777654 24577889999988887654 444677788898887655433356677889999999
Q ss_pred EEEEcccchH
Q 048729 115 LVFVDHLHTY 124 (330)
Q Consensus 115 ~i~~~~~~~~ 124 (330)
.+...|.++.
T Consensus 275 ~~~~~P~~l~ 284 (562)
T 3ite_A 275 HAGIVPSLLD 284 (562)
T ss_dssp EEEECHHHHH
T ss_pred EEEcCHHHHh
Confidence 9888765443
No 72
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=84.10 E-value=1.6 Score=45.29 Aligned_cols=95 Identities=14% Similarity=0.132 Sum_probs=68.5
Q ss_pred cCCCcEEE-eCC--------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCC
Q 048729 28 YTDCPSLV-YNN--------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINT 97 (330)
Q Consensus 28 ~p~~~a~~-~~~--------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~ 97 (330)
.|+.+|++ +++ -.+|.+.+... .......++.++|+++.+.+.+++. +..+++.+..|+.++..+.
T Consensus 605 ~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~ 680 (1304)
T 2vsq_A 605 DPNDPAYIMYTSGTTGKPKGNITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADE 680 (1304)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCG
T ss_pred CCCCeEEEEeCCCCCCCCCEEEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECCh
Confidence 46666665 332 12888877532 1222356889999999999988765 4456888899998887764
Q ss_pred --CCCHHHHHHHHHhcCCcEEEEcccchHHH
Q 048729 98 --RLDAHTLSVLLQHSESKLVFVDHLHTYLL 126 (330)
Q Consensus 98 --~~~~~~l~~~l~~~~~~~i~~~~~~~~~~ 126 (330)
..++..+...+.+.+++++...|.++..+
T Consensus 681 ~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l 711 (1304)
T 2vsq_A 681 HTLLDTERLTDLILQENVNVMFATTALFNLL 711 (1304)
T ss_dssp GGTTCHHHHHHHHHHHTCCEEEEEHHHHHHH
T ss_pred hhcCCHHHHHHHHHHcCCcEEEccHHHHHHH
Confidence 46788999999999999998877655443
No 73
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=54.81 E-value=58 Score=27.68 Aligned_cols=77 Identities=9% Similarity=0.072 Sum_probs=51.4
Q ss_pred eecHHHHHHHHHHH---HHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEE
Q 048729 40 TYTWSETHRRCLQV---ASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLV 116 (330)
Q Consensus 40 ~~T~~el~~~~~~~---a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i 116 (330)
.+++.+........ .+.+...++++||+|++...-+...+...++....|+.++.+..+ +++ ..++++.+++.+
T Consensus 136 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~r-~~~~~~~Ga~~~ 212 (348)
T 4eez_A 136 GLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QDK-LNLAKKIGADVT 212 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HHH-HHHHHHTTCSEE
T ss_pred CCCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HHH-hhhhhhcCCeEE
Confidence 36776654333322 233456789999999999886677777777776778877766542 333 457778888877
Q ss_pred EEc
Q 048729 117 FVD 119 (330)
Q Consensus 117 ~~~ 119 (330)
+-.
T Consensus 213 i~~ 215 (348)
T 4eez_A 213 INS 215 (348)
T ss_dssp EEC
T ss_pred EeC
Confidence 653
No 74
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=53.12 E-value=66 Score=27.81 Aligned_cols=60 Identities=13% Similarity=0.185 Sum_probs=41.0
Q ss_pred HHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCC----CCCHHHHHHHHHhc--CCcEEEEcc
Q 048729 58 SSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINT----RLDAHTLSVLLQHS--ESKLVFVDH 120 (330)
Q Consensus 58 ~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~----~~~~~~l~~~l~~~--~~~~i~~~~ 120 (330)
..+++++||.|++..+....+... +...|+.++.++. ....+.+...++.. ++++++...
T Consensus 65 ~~l~~~~gd~Vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~ 130 (394)
T 1o69_A 65 RVAGVKQDDIVLASSFTFIASVAP---ICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH 130 (394)
T ss_dssp HHTTCCTTCEEEEESSSCGGGTHH---HHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred HHcCCCCCCEEEECCCccHHHHHH---HHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC
Confidence 344578999999999988776443 3346876665553 35678888888764 577766554
No 75
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=53.09 E-value=30 Score=21.74 Aligned_cols=36 Identities=8% Similarity=-0.044 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHH
Q 048729 17 TLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQ 52 (330)
Q Consensus 17 ~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~ 52 (330)
+...+......+|+.+.++..++..+|..+.+.+..
T Consensus 32 L~~~l~~~~~~~~~~~V~I~aD~~~~y~~vv~vmd~ 67 (74)
T 2jwk_A 32 VTQLSRQEFDKDNNTLFLVGGAKEVPYEEVIKALNL 67 (74)
T ss_dssp HHHHHHHHHHHCTTCCEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCceEEEEcCCCCCHHHHHHHHHH
Confidence 344455555556666666666677777666544443
No 76
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=51.03 E-value=38 Score=29.34 Aligned_cols=58 Identities=12% Similarity=0.072 Sum_probs=39.1
Q ss_pred HHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCC-----CCCHHHHHHHHHhcC--CcEEE
Q 048729 57 LSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINT-----RLDAHTLSVLLQHSE--SKLVF 117 (330)
Q Consensus 57 L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~-----~~~~~~l~~~l~~~~--~~~i~ 117 (330)
+...++++||.|.+..+..+.+.. ++...|+.++.++. ..+++.+...+...+ +++++
T Consensus 70 l~~l~~~~Gd~Vi~~~~~~~~~~~---~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~ 134 (377)
T 3ju7_A 70 IQLKKRKKGKYALMPSFTFPATPL---AAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVV 134 (377)
T ss_dssp HHHHSCTTCCEEEEESSSCTHHHH---HHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEEC
T ss_pred HHHcCCCCcCEEEECCCCcHHHHH---HHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEE
Confidence 444578899999988887766543 34567887666542 346888888774434 66665
No 77
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=48.99 E-value=74 Score=27.12 Aligned_cols=65 Identities=11% Similarity=0.031 Sum_probs=39.0
Q ss_pred HHHcC-CCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEccc
Q 048729 57 LSSVG-IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHL 121 (330)
Q Consensus 57 L~~~g-~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~ 121 (330)
+.+.| +++|+.|.+....+-.-....+++...|..++.+-|...+..-...++.++++++++...
T Consensus 62 a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 62 AEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 34445 488887534444443333444566666885554433333345566889999999999764
No 78
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=48.29 E-value=1.3e+02 Score=25.81 Aligned_cols=55 Identities=16% Similarity=0.198 Sum_probs=39.8
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhc---CCcEEEEcc
Q 048729 62 IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHS---ESKLVFVDH 120 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~---~~~~i~~~~ 120 (330)
.++||.|++..|.+..+.. ++...|+.++.++. ...+.+...++.. +++++++..
T Consensus 124 ~~~gd~V~~~~p~~~~~~~---~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~~~ 181 (398)
T 3a2b_A 124 MGRNDYILLDERDHASIID---GSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICTDG 181 (398)
T ss_dssp SCTTCEEEEETTCCHHHHH---HHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEEES
T ss_pred hCCCCEEEECCccCHHHHH---HHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEEeC
Confidence 4689999998887776643 34457888877764 5678888888875 577776644
No 79
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=46.71 E-value=1.1e+02 Score=25.77 Aligned_cols=55 Identities=11% Similarity=0.131 Sum_probs=37.2
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecC--C----CCCHHHHHHHHHh----cCCcEEEEc
Q 048729 62 IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNIN--T----RLDAHTLSVLLQH----SESKLVFVD 119 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~--~----~~~~~~l~~~l~~----~~~~~i~~~ 119 (330)
+++||.|++..+..+.+... +...|+.++.++ . ..+.+.+...+++ .++++++..
T Consensus 90 ~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~ 154 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSSYVA---AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALIT 154 (371)
T ss_dssp CCTTCEEEEETTCCHHHHHH---HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEE
T ss_pred hCCCCEEEEccCcchHHHHH---HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEE
Confidence 46899999988887766544 456677666655 2 3467888888875 355665543
No 80
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=45.87 E-value=80 Score=26.79 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=32.5
Q ss_pred CCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCC----CCCHHHHHHHHHhcCCcEEEE
Q 048729 63 QRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINT----RLDAHTLSVLLQHSESKLVFV 118 (330)
Q Consensus 63 ~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~----~~~~~~l~~~l~~~~~~~i~~ 118 (330)
++||.|++..+..+.+...+.++...|+.++.++. ..+.+.+...++. ++++++.
T Consensus 87 ~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~ 145 (384)
T 1eg5_A 87 KRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSI 145 (384)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEE
T ss_pred CCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEE
Confidence 57788877777666655444444456776655542 2456677666653 4555554
No 81
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=45.73 E-value=73 Score=27.21 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=38.1
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCC-------CCHHHHHHHHHhcCCcEEEE
Q 048729 62 IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTR-------LDAHTLSVLLQHSESKLVFV 118 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~-------~~~~~l~~~l~~~~~~~i~~ 118 (330)
.++||.|++..+....+.. ++...|+.++.++.. ...+.+...+++.++++++.
T Consensus 106 ~~~gd~vl~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i 166 (391)
T 3dzz_A 106 TSPGDQILVQEPVYNMFYS---VIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVF 166 (391)
T ss_dssp SCTTCEEEECSSCCHHHHH---HHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEE
T ss_pred CCCCCeEEECCCCcHHHHH---HHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEE
Confidence 4688998888777766443 344678877666542 67889998888667777654
No 82
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=43.53 E-value=1.5e+02 Score=25.06 Aligned_cols=55 Identities=7% Similarity=-0.095 Sum_probs=33.6
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecC--CC--CCHHHHHHHHHhcCCcEEEE
Q 048729 61 GIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNIN--TR--LDAHTLSVLLQHSESKLVFV 118 (330)
Q Consensus 61 g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~--~~--~~~~~l~~~l~~~~~~~i~~ 118 (330)
+.++||.|++..+.+..+... +...|+.++.++ .. +..+.+...++..+++.++.
T Consensus 119 ~~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~ 177 (397)
T 3f9t_A 119 SKNEHPKIIVPITAHFSFEKG---REMMDLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIG 177 (397)
T ss_dssp CCCSSCEEEEETTCCTHHHHH---HHHHTCEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEE
T ss_pred cCCCCeEEEECCcchhHHHHH---HHHcCceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEE
Confidence 335688888888877664332 233466555444 32 46788888888755555543
No 83
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=43.52 E-value=69 Score=27.45 Aligned_cols=59 Identities=15% Similarity=0.180 Sum_probs=38.0
Q ss_pred HHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecC--C---CCCHHHHHHHHHhcCCcEEEEcc
Q 048729 58 SSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNIN--T---RLDAHTLSVLLQHSESKLVFVDH 120 (330)
Q Consensus 58 ~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~--~---~~~~~~l~~~l~~~~~~~i~~~~ 120 (330)
..+++++||.|++..+..+.+.. ++...|+.++.++ + .+..+.+...++. ++++++..+
T Consensus 72 ~~~~~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~ 135 (393)
T 1mdo_A 72 MALGIGEGDEVITPSMTWVSTLN---MIVLLGANPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIPVH 135 (393)
T ss_dssp HHTTCCTTCEEEEESSSCHHHHH---HHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCBC
T ss_pred HHcCCCCCCEEEeCCCccHhHHH---HHHHCCCEEEEEeccCCcCCCCHHHHHHhcCC-CceEEEEeC
Confidence 34457899999888887766543 3445677665554 2 2567788777764 566666543
No 84
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=43.02 E-value=96 Score=25.97 Aligned_cols=75 Identities=11% Similarity=0.126 Sum_probs=48.3
Q ss_pred eecHHHHHHHHHH---HHHHHHHcCCCCCCEEEEECCC-CHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcE
Q 048729 40 TYTWSETHRRCLQ---VASSLSSVGIQRGHVVSVVAPN-VPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKL 115 (330)
Q Consensus 40 ~~T~~el~~~~~~---~a~~L~~~g~~~gd~V~~~~~~-~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ 115 (330)
.+++.+....... ..+.|...++++|++|++.... ....+...+|- ..|+.++... +.++ ..++++.+++.
T Consensus 125 ~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~-~~Ga~vi~~~---~~~~-~~~~~~lGa~~ 199 (321)
T 3tqh_A 125 KLSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAK-QKGTTVITTA---SKRN-HAFLKALGAEQ 199 (321)
T ss_dssp TSCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEE---CHHH-HHHHHHHTCSE
T ss_pred CCCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHH-HcCCEEEEEe---ccch-HHHHHHcCCCE
Confidence 3677766543222 1233456799999999999744 46666665554 6688776554 3444 56778888887
Q ss_pred EEEc
Q 048729 116 VFVD 119 (330)
Q Consensus 116 i~~~ 119 (330)
++..
T Consensus 200 ~i~~ 203 (321)
T 3tqh_A 200 CINY 203 (321)
T ss_dssp EEET
T ss_pred EEeC
Confidence 6643
No 85
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=41.87 E-value=1.1e+02 Score=27.12 Aligned_cols=17 Identities=29% Similarity=0.266 Sum_probs=10.7
Q ss_pred HHHHHHHhcCcCcceEE
Q 048729 236 AEVESVLYSITAVNEAA 252 (330)
Q Consensus 236 ~~iE~~l~~~~~v~~~~ 252 (330)
..+.+.|.++|.|..+.
T Consensus 310 ~~la~~L~~~p~v~~V~ 326 (430)
T 3ri6_A 310 QELAHWLLSIPQVKCVN 326 (430)
T ss_dssp HHHHHHHTTCTTCEEEE
T ss_pred HHHHHHHhCCCCccEEE
Confidence 34556667788776543
No 86
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=41.18 E-value=1.1e+02 Score=26.23 Aligned_cols=57 Identities=14% Similarity=0.042 Sum_probs=30.4
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecC--C--CCCHHHHHHHHHhcCCcEEEEc
Q 048729 62 IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNIN--T--RLDAHTLSVLLQHSESKLVFVD 119 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~--~--~~~~~~l~~~l~~~~~~~i~~~ 119 (330)
+++||.|++..+..+... ..-++...|+.++.++ . .++.+.+...+++.++++++..
T Consensus 83 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~ 143 (416)
T 3isl_A 83 IEPEDDVLIPIYGRFGYL-LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMV 143 (416)
T ss_dssp CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEE
T ss_pred cCCCCEEEEecCCcccHH-HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEE
Confidence 467777777766544321 1223344565444433 2 2356777777765556665543
No 87
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=39.31 E-value=1.3e+02 Score=25.82 Aligned_cols=64 Identities=13% Similarity=0.109 Sum_probs=40.8
Q ss_pred HHcC-CCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEccc
Q 048729 58 SSVG-IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHL 121 (330)
Q Consensus 58 ~~~g-~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~ 121 (330)
.+.| +++|.+..+.....-.-...-+++...|..+..+-|...+..-...++.++++++++++.
T Consensus 78 ~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 78 EEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 3334 577765555555554444444677778885554444444455566899999999998654
No 88
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=38.47 E-value=1.3e+02 Score=25.65 Aligned_cols=60 Identities=12% Similarity=0.198 Sum_probs=38.3
Q ss_pred CCCCCCEEEEECCCCH------HHHHHHHH-hhhcCcEEeecCCC------C--C----HHHHHHHHHhcCCcEEEEcc
Q 048729 61 GIQRGHVVSVVAPNVP------SMYELQFG-VPMSGAILNNINTR------L--D----AHTLSVLLQHSESKLVFVDH 120 (330)
Q Consensus 61 g~~~gd~V~~~~~~~~------~~~~~~la-~~~~G~~~~~l~~~------~--~----~~~l~~~l~~~~~~~i~~~~ 120 (330)
.+++||+|++++|.+. +-+-.-.. +-..|..++.-+.- + + ++++..++.+-.++.|++..
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 4789999999999862 11211122 23457777644321 1 1 35678888888999999864
No 89
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=38.34 E-value=63 Score=26.71 Aligned_cols=46 Identities=20% Similarity=0.277 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCC-H-------H-HHHHHHHhhh-cCcEEeecC
Q 048729 51 LQVASSLSSVGIQRGHVVSVVAPNV-P-------S-MYELQFGVPM-SGAILNNIN 96 (330)
Q Consensus 51 ~~~a~~L~~~g~~~gd~V~~~~~~~-~-------~-~~~~~la~~~-~G~~~~~l~ 96 (330)
+.+.+.|+++|+++||.|++-++.+ + . ++-+++-++. -|.+++|-.
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl~~lG~v~gg~~~vi~AL~~~vg~~GTLvmPt~ 73 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSLSSIGWISGGAVAVVEALMEVITEEGTIIMPTQ 73 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECTGGGCCBTTHHHHHHHHHHHHHCTTSEEEEECC
T ss_pred HHHHHHHHHcCCCCCCEEEEEechHHhCCCCCCHHHHHHHHHHHhCCCCeEEEecc
Confidence 4567778889999999999988864 1 2 1223333333 466776654
No 90
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=38.26 E-value=1.4e+02 Score=25.51 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=32.1
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecC--C--CCCHHHHHHHHHhcCCcEEEE
Q 048729 62 IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNIN--T--RLDAHTLSVLLQHSESKLVFV 118 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~--~--~~~~~~l~~~l~~~~~~~i~~ 118 (330)
+++||.|++..+..+.+. ..-++...|+.++.++ . ..+.+.+...++..++++++.
T Consensus 90 ~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~ 149 (396)
T 2ch1_A 90 LEEGDRVLIAVNGIWAER-AVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFL 149 (396)
T ss_dssp CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEE
T ss_pred cCCCCeEEEEcCCcccHH-HHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCEEEE
Confidence 357787777777665542 1123345566554443 2 356677777776545666554
No 91
>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli}
Probab=38.14 E-value=1e+02 Score=23.41 Aligned_cols=70 Identities=14% Similarity=0.177 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCcCcceEEEEeecCCCCCceeEE--EEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEcc
Q 048729 235 SAEVESVLYSITAVNEAAVVARPDMFWGEIPCA--FVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSE 307 (330)
Q Consensus 235 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~ 307 (330)
-.++++.|.++++|..+-|-..-.......+.| ++.++++.... .....|+..+...++... |..+.+++
T Consensus 92 egELartI~~i~~V~~ARVhl~lP~~~~~~~sASV~l~~~~g~~l~--~~q~~I~~LVa~SV~gL~-~enVtVvd 163 (171)
T 1yj7_A 92 EQDIERLLSKIPGVIDCSVSLNVNNNESQPSSAAVLVISSPEVNLA--PSVIQIKNLVKNSVDDLK-LENISVVI 163 (171)
T ss_dssp HHHHHHHHTTSTTEEEEEEEEEC-------CEEEEEEEECTTCCCG--GGHHHHHHHHHHHSTTCC-GGGEEEEE
T ss_pred HHHHHHHHHcCCCeeEEEEEEECCCCCCCCceEEEEEEeCCCCCCc--HhHHHHHHHHHHhcCCCC-cccEEEEe
Confidence 458999999999999998864422222233444 44455554422 223467777777775554 45555554
No 92
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=37.27 E-value=1.4e+02 Score=25.46 Aligned_cols=57 Identities=14% Similarity=0.039 Sum_probs=31.2
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecC--C--CCCHHHHHHHHHhcCCcEEEEc
Q 048729 62 IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNIN--T--RLDAHTLSVLLQHSESKLVFVD 119 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~--~--~~~~~~l~~~l~~~~~~~i~~~ 119 (330)
+++||.|++..+..+... ..-++...|+.++.++ . ....+.+...++..++++++..
T Consensus 85 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~ 145 (411)
T 3nnk_A 85 IRPGDKVLVPVFGRFGHL-LCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTV 145 (411)
T ss_dssp CCTTCEEEEEECSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEE
T ss_pred cCCCCEEEEecCCchHHH-HHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEe
Confidence 467777777666554321 2233344565444433 2 2356777777776566666554
No 93
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=37.20 E-value=1.1e+02 Score=26.25 Aligned_cols=61 Identities=15% Similarity=0.120 Sum_probs=41.5
Q ss_pred HHHH--cCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEc
Q 048729 56 SLSS--VGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVD 119 (330)
Q Consensus 56 ~L~~--~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~ 119 (330)
.|.. .++++|++|++...-....++..+|-...|+.++.+.. +++++ .++++.+++.++..
T Consensus 176 al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~vi~~ 238 (359)
T 1h2b_A 176 AVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEKL-KLAERLGADHVVDA 238 (359)
T ss_dssp HHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHH-HHHHHTTCSEEEET
T ss_pred HHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHH-HHHHHhCCCEEEec
Confidence 3445 78999999999998556666666665443887666654 34443 45567888877653
No 94
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=36.89 E-value=1.3e+02 Score=25.49 Aligned_cols=57 Identities=14% Similarity=0.059 Sum_probs=34.8
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCC----CCCHHHHHHHHHhcCCcEEEEc
Q 048729 62 IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINT----RLDAHTLSVLLQHSESKLVFVD 119 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~----~~~~~~l~~~l~~~~~~~i~~~ 119 (330)
+++||.|.+..+..+... ..-.+...|+.++.++. .+..+.+...++..++++++..
T Consensus 74 ~~~gd~vi~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~ 134 (384)
T 3zrp_A 74 LKPNDKILVVSNGVFGDR-WEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALT 134 (384)
T ss_dssp CCTTCEEEEECSSHHHHH-HHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEE
T ss_pred cCCCCEEEEecCCcchHH-HHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEe
Confidence 578888887766543321 11223456776655543 2567888888887667776654
No 95
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=36.71 E-value=62 Score=26.90 Aligned_cols=85 Identities=6% Similarity=0.034 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHH--cCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHH---HHHHHHHhcCCcEEE
Q 048729 43 WSETHRRCLQVASSLSS--VGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAH---TLSVLLQHSESKLVF 117 (330)
Q Consensus 43 ~~el~~~~~~~a~~L~~--~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~---~l~~~l~~~~~~~i~ 117 (330)
+..+......+-.++++ ..+..+.+..+.....+.|+.-.+++-..|..-+.-...-++. .+...+++.++++||
T Consensus 138 ~~~~~~~L~~ld~~~~~~l~~~~~~~~~~vt~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if 217 (282)
T 3mfq_A 138 TEKYQAQLDDLHAWVEKELSVIPKESRYLVTPHDAFNYFAASYDFTLYAPQGVSTDSEVANSDMIETVNLIIDHNIKAIF 217 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCGGGCEEECSSSCCHHHHHHTTCEEECSSCSSSCSCCCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccCcEEEEECchHHHHHHHCCCeEecccccCCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 34445555555555552 2443456777777788999998888776653221111234555 455567788999999
Q ss_pred EcccchHHHH
Q 048729 118 VDHLHTYLLL 127 (330)
Q Consensus 118 ~~~~~~~~~~ 127 (330)
+.+.+-....
T Consensus 218 ~e~~~~~~~~ 227 (282)
T 3mfq_A 218 TESTTNPERM 227 (282)
T ss_dssp CBTTSCTHHH
T ss_pred EeCCCChHHH
Confidence 9887665444
No 96
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=36.60 E-value=1.1e+02 Score=26.07 Aligned_cols=57 Identities=19% Similarity=0.158 Sum_probs=33.2
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHhhhcCcEEe--ecCC--CCCHHHHHHHHHh-cCCcEEEEc
Q 048729 62 IQRGHVVSVVAPNVPSMYELQFGVPMSGAILN--NINT--RLDAHTLSVLLQH-SESKLVFVD 119 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~--~l~~--~~~~~~l~~~l~~-~~~~~i~~~ 119 (330)
+++||.|++..+..+.+. ..-.+...|+.++ +++. ..+.+.+...+++ .++++++..
T Consensus 80 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~ 141 (392)
T 2z9v_A 80 ISPDDVVLNLASGVYGKG-FGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVC 141 (392)
T ss_dssp CCTTCCEEEEESSHHHHH-HHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred cCCCCEEEEecCCcccHH-HHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEe
Confidence 468888888777665542 1111233465444 4433 2567888888864 356666554
No 97
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=36.53 E-value=1.7e+02 Score=25.20 Aligned_cols=56 Identities=11% Similarity=0.175 Sum_probs=36.1
Q ss_pred CCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCC----CCCHHHHHHHHHhcCCcEEEEc
Q 048729 63 QRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINT----RLDAHTLSVLLQHSESKLVFVD 119 (330)
Q Consensus 63 ~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~----~~~~~~l~~~l~~~~~~~i~~~ 119 (330)
++||.|++..+..+.+...+..+-..|+.++.++. .+..+.+...++. ++++++..
T Consensus 111 ~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 170 (423)
T 3lvm_A 111 KKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRD-DTILVSIM 170 (423)
T ss_dssp TTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCT-TEEEEECC
T ss_pred cCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcCC-CcEEEEEe
Confidence 46899988888887765554444556776655543 2357777777764 45565544
No 98
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=36.19 E-value=1.4e+02 Score=25.43 Aligned_cols=60 Identities=13% Similarity=0.213 Sum_probs=38.1
Q ss_pred CCCCCCEEEEECCCCHH------HHHHHHHhh-hcCcEEeecCC---C-----CC----HHHHHHHHHhcCCcEEEEcc
Q 048729 61 GIQRGHVVSVVAPNVPS------MYELQFGVP-MSGAILNNINT---R-----LD----AHTLSVLLQHSESKLVFVDH 120 (330)
Q Consensus 61 g~~~gd~V~~~~~~~~~------~~~~~la~~-~~G~~~~~l~~---~-----~~----~~~l~~~l~~~~~~~i~~~~ 120 (330)
.+++||+|++++|.+.- -+-.-...+ ..|..++.-+. . -+ ++++..++.+-.++.|++..
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 47899999999998832 122222223 46887764321 1 11 34677777788899999864
No 99
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=36.14 E-value=1.7e+02 Score=24.73 Aligned_cols=53 Identities=21% Similarity=0.270 Sum_probs=36.6
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCC-------CCHHHHHHHHHhcCCcEEEE
Q 048729 62 IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTR-------LDAHTLSVLLQHSESKLVFV 118 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~-------~~~~~l~~~l~~~~~~~i~~ 118 (330)
+++||.|++..|....+.. ++...|+.++.++.. ...+.+...+ ..++++++.
T Consensus 103 ~~~gd~vl~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~i 162 (383)
T 3kax_A 103 TKENESVLVQPPIYPPFFE---MVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQF-QQGVKLMLL 162 (383)
T ss_dssp CCTTCEEEECSSCCHHHHH---HHHHTTCEEEECCCEEETTEEECCHHHHHHHH-TTTCCEEEE
T ss_pred CCCCCEEEEcCCCcHHHHH---HHHHcCCEEEeccceecCCcEEEcHHHHHHHh-CcCCeEEEE
Confidence 4689999888877766543 345678877766532 6788888888 456776654
No 100
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=36.03 E-value=2e+02 Score=24.39 Aligned_cols=78 Identities=21% Similarity=0.108 Sum_probs=48.0
Q ss_pred eecHHHHHHHH--HHHH-HHHHH-cCCCCCCEEEEECCCC-HHHHHHHHHhhhcCcEEeec-CCCCCHHHHHHHHHhcCC
Q 048729 40 TYTWSETHRRC--LQVA-SSLSS-VGIQRGHVVSVVAPNV-PSMYELQFGVPMSGAILNNI-NTRLDAHTLSVLLQHSES 113 (330)
Q Consensus 40 ~~T~~el~~~~--~~~a-~~L~~-~g~~~gd~V~~~~~~~-~~~~~~~la~~~~G~~~~~l-~~~~~~~~l~~~l~~~~~ 113 (330)
.+++.+..... -..| +.|.. .++++|++|++....+ ...+++.+|- ..|+.++.+ ...-..++...++++.++
T Consensus 139 ~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lGa 217 (357)
T 1zsy_A 139 DIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAA-ALGLRTINVVRDRPDIQKLSDRLKSLGA 217 (357)
T ss_dssp SSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHH-HHTCEEEEEECCCSCHHHHHHHHHHTTC
T ss_pred CCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHH-HcCCEEEEEecCccchHHHHHHHHhcCC
Confidence 36777654321 1112 23333 5899999999999854 6666666655 568855444 343334445567788888
Q ss_pred cEEEE
Q 048729 114 KLVFV 118 (330)
Q Consensus 114 ~~i~~ 118 (330)
+.++.
T Consensus 218 ~~vi~ 222 (357)
T 1zsy_A 218 EHVIT 222 (357)
T ss_dssp SEEEE
T ss_pred cEEEe
Confidence 87775
No 101
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis}
Probab=35.84 E-value=1.8e+02 Score=26.80 Aligned_cols=67 Identities=13% Similarity=0.121 Sum_probs=45.4
Q ss_pred cCCCCCCEEEEECCCCHHHH---H-HHHHhhhcCcEE-------eecCCCCCHHHHHHHHHhcCCcEEEEcccchHHH
Q 048729 60 VGIQRGHVVSVVAPNVPSMY---E-LQFGVPMSGAIL-------NNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLL 126 (330)
Q Consensus 60 ~g~~~gd~V~~~~~~~~~~~---~-~~la~~~~G~~~-------~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~ 126 (330)
..+++||.|.+.+..-+..- . .+=.+...|+-+ +.++.+.+.+++..+++..+|+.++..-.-...+
T Consensus 319 ~~~~~~d~vi~s~~~ipGne~~~~~~~~~l~~~g~~v~~~~~~~~h~SgHa~~~eL~~~~~~~~Pk~~ipvHGe~~~~ 396 (555)
T 3zq4_A 319 ISINPGDTVVFSSSPIPGNTISVSRTINQLYRAGAEVIHGPLNDIHTSGHGGQEEQKLMLRLIKPKFFMPIHGEYRMQ 396 (555)
T ss_dssp CCCCTTCEEEECSCCCTTCHHHHHHHHHHHHHTTCEEECSSSSCCCCCSSCCHHHHHHHHHHSCEEEEEEESBCHHHH
T ss_pred cccCCCCEEEEECCCCCCcHHHHHHHHHHHHHCCCEEEecCCcceEEeCCCCHHHHHHHHHHhCCCEEEEcCCCHHHH
Confidence 46889999988877543321 1 112346778866 3456788899999999999999776554444333
No 102
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=35.34 E-value=73 Score=26.90 Aligned_cols=82 Identities=10% Similarity=0.045 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHH--cCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCC--CCCHH---HHHHHHHhcCCcE
Q 048729 43 WSETHRRCLQVASSLSS--VGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINT--RLDAH---TLSVLLQHSESKL 115 (330)
Q Consensus 43 ~~el~~~~~~~a~~L~~--~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~--~~~~~---~l~~~l~~~~~~~ 115 (330)
+..+....+.+-..+++ ..+....+..+.....+.|+.-.+++-..+. ..+++ ..++. .+...+++.++++
T Consensus 165 a~~~~~~L~~Ld~~~~~~l~~~p~~~~~~v~~H~af~Yfa~~yGl~~~~~--~~i~~~~ePs~~~l~~l~~~ik~~~v~~ 242 (307)
T 3ujp_A 165 AAVYSEQLKAIDRQLGADLEQVPANQRFLVSCEGAFSYLARDYGMEEIYM--WPINAEQQFTPKQVQTVIEEVKTNNVPT 242 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCGGGCEEEEEESTTHHHHHHTTCEEEEE--ESSCCSSCCCHHHHHHHHHHHHTTTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCEEEEECchHHHHHHHCCCcEEEe--eccCCCCCCCHHHHHHHHHHHHhcCCcE
Confidence 34444455555555542 2343344666666778999998888875532 23333 44454 5666777899999
Q ss_pred EEEcccchHHH
Q 048729 116 VFVDHLHTYLL 126 (330)
Q Consensus 116 i~~~~~~~~~~ 126 (330)
||+.+.+-...
T Consensus 243 If~e~~~~~k~ 253 (307)
T 3ujp_A 243 IFCESTVSDKG 253 (307)
T ss_dssp EEEETTSCSHH
T ss_pred EEEeCCCChHH
Confidence 99988766543
No 103
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=34.79 E-value=78 Score=26.23 Aligned_cols=24 Identities=21% Similarity=0.427 Sum_probs=19.8
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCC
Q 048729 52 QVASSLSSVGIQRGHVVSVVAPNV 75 (330)
Q Consensus 52 ~~a~~L~~~g~~~gd~V~~~~~~~ 75 (330)
.+.+.|+++|+++||.|++-++.+
T Consensus 17 ~L~~~L~~LGI~~Gd~llVHsSl~ 40 (273)
T 2nyg_A 17 SITEDLKALGLKKGMTVLVHSSLS 40 (273)
T ss_dssp HHHHHHHHHTCCTTCEEEEEECSG
T ss_pred HHHHHHHHcCCCCCCEEEEEechH
Confidence 356778888999999999988754
No 104
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=34.65 E-value=1.4e+02 Score=25.31 Aligned_cols=74 Identities=12% Similarity=0.038 Sum_probs=46.4
Q ss_pred eecHHHHHHHHHH---HHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEE
Q 048729 40 TYTWSETHRRCLQ---VASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLV 116 (330)
Q Consensus 40 ~~T~~el~~~~~~---~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i 116 (330)
.+++.+....... .-+.|...++++||+|++...-....++..+|- ..|+.++.+..+-. ++ .++++.+++.+
T Consensus 149 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~~~--~~-~~~~~lGa~~v 224 (348)
T 3two_A 149 NAPLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAV-AMGAEVSVFARNEH--KK-QDALSMGVKHF 224 (348)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHH-HTTCEEEEECSSST--TH-HHHHHTTCSEE
T ss_pred CCCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCHH--HH-HHHHhcCCCee
Confidence 4677666422211 123455669999999999987446666665654 56887776654322 22 35567888877
Q ss_pred E
Q 048729 117 F 117 (330)
Q Consensus 117 ~ 117 (330)
+
T Consensus 225 ~ 225 (348)
T 3two_A 225 Y 225 (348)
T ss_dssp E
T ss_pred c
Confidence 7
No 105
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=34.34 E-value=99 Score=26.27 Aligned_cols=57 Identities=14% Similarity=0.160 Sum_probs=28.9
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHH-hhhcCcEEeecCCC------CCHHHHHHHHHhcCCcEEEE
Q 048729 61 GIQRGHVVSVVAPNVPSMYELQFG-VPMSGAILNNINTR------LDAHTLSVLLQHSESKLVFV 118 (330)
Q Consensus 61 g~~~gd~V~~~~~~~~~~~~~~la-~~~~G~~~~~l~~~------~~~~~l~~~l~~~~~~~i~~ 118 (330)
.+++||.|++..+..+.+...+.. +...|+.++.++.. ...+.+...++. ++++++.
T Consensus 97 ~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~-~~~~v~~ 160 (390)
T 1elu_A 97 DWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGP-KTRLVIL 160 (390)
T ss_dssp CCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCT-TEEEEEE
T ss_pred CCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCC-CceEEEE
Confidence 356777777777776665543322 23446655444421 234455444432 3444443
No 106
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=34.29 E-value=1.3e+02 Score=28.83 Aligned_cols=56 Identities=11% Similarity=0.099 Sum_probs=40.4
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCC---------C-----CHHHHHHHHHhc-CCc----EEEEcc
Q 048729 62 IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTR---------L-----DAHTLSVLLQHS-ESK----LVFVDH 120 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~---------~-----~~~~l~~~l~~~-~~~----~i~~~~ 120 (330)
+++||.|++.-+.+..+.- ++..+|+.++.+++. . +.+.+...+++. +.+ ++++++
T Consensus 232 ~~pGD~VLv~r~~H~S~~~---~l~lsGa~pv~v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p 306 (715)
T 3n75_A 232 APAGSTILIDRNCHKSLTH---LMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS 306 (715)
T ss_dssp CCTTCEEEEESSCCHHHHH---HHHHSCCEEEEECCCBCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS
T ss_pred CCCCCEEEECCCccHHHHH---HHHHcCCEEEEEeccccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC
Confidence 5799999988888766554 567899998877642 2 588899999864 233 556655
No 107
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=34.04 E-value=1.2e+02 Score=25.60 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=30.2
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729 62 IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV 118 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~ 118 (330)
.++||.|++..|..+.+.. ++...|+.++.++ .+.+.+...++. ++++++.
T Consensus 110 ~~~gd~vl~~~p~~~~~~~---~~~~~g~~~~~v~--~d~~~l~~~l~~-~~~~v~~ 160 (370)
T 2z61_A 110 IDDGDEVLIQNPCYPCYKN---FIRFLGAKPVFCD--FTVESLEEALSD-KTKAIII 160 (370)
T ss_dssp CCTTCEEEEESSCCTHHHH---HHHHTTCEEEEEC--SSHHHHHHHCCS-SEEEEEE
T ss_pred cCCCCEEEEeCCCchhHHH---HHHHcCCEEEEeC--CCHHHHHHhccc-CceEEEE
Confidence 3567777777776655433 2345677666665 566677666654 4444443
No 108
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=33.99 E-value=1.2e+02 Score=25.64 Aligned_cols=76 Identities=13% Similarity=0.115 Sum_probs=48.9
Q ss_pred eecHHHHHHHHHH---HHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEE
Q 048729 40 TYTWSETHRRCLQ---VASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLV 116 (330)
Q Consensus 40 ~~T~~el~~~~~~---~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i 116 (330)
.+++.+....... ..+.|...++++||+|++...-....+...+|- ..|+.++.+.. +++.+ .++++.+++.+
T Consensus 139 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~~ 214 (340)
T 3s2e_A 139 KVGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYAR-AMGLRVAAVDI--DDAKL-NLARRLGAEVA 214 (340)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHH-HTTCEEEEEES--CHHHH-HHHHHTTCSEE
T ss_pred CCCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeC--CHHHH-HHHHHcCCCEE
Confidence 4677665422221 123445668999999999887556777666655 56887766654 34444 46678888877
Q ss_pred EEc
Q 048729 117 FVD 119 (330)
Q Consensus 117 ~~~ 119 (330)
+..
T Consensus 215 i~~ 217 (340)
T 3s2e_A 215 VNA 217 (340)
T ss_dssp EET
T ss_pred EeC
Confidence 654
No 109
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=33.94 E-value=1.9e+02 Score=25.23 Aligned_cols=55 Identities=15% Similarity=0.118 Sum_probs=31.2
Q ss_pred CCCCCEEEEECCCCHHHHHHHH-HhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729 62 IQRGHVVSVVAPNVPSMYELQF-GVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV 118 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~l-a~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~ 118 (330)
+++||.|++..+....+...+- .+-..|+.++.++.. ..+.+...++. ++++++.
T Consensus 117 ~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~ai~~-~t~~v~l 172 (414)
T 3ndn_A 117 LGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGD-DLSQWERALSV-PTQAVFF 172 (414)
T ss_dssp CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-CHHHHHHHTSS-CCSEEEE
T ss_pred hCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCC-CHHHHHHhcCC-CCeEEEE
Confidence 5677877777766655443321 123466666655543 55666666654 4555554
No 110
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=33.67 E-value=1.7e+02 Score=24.71 Aligned_cols=53 Identities=13% Similarity=0.122 Sum_probs=32.1
Q ss_pred CCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecC--C--CCCHHHHHHHHHhcCCcEEEE
Q 048729 63 QRGHVVSVVAPNVPSMYELQFGVPMSGAILNNIN--T--RLDAHTLSVLLQHSESKLVFV 118 (330)
Q Consensus 63 ~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~--~--~~~~~~l~~~l~~~~~~~i~~ 118 (330)
++||.|++..|..+.+.. ++...|+.++.++ . ....+.+...++..++++++.
T Consensus 114 ~~gd~Vl~~~~~y~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~ 170 (369)
T 3cq5_A 114 GPGRTALGFQPSYSMHPI---LAKGTHTEFIAVSRGADFRIDMDVALEEIRAKQPDIVFV 170 (369)
T ss_dssp STTCEEEEEESSCTHHHH---HHHHTTCEEEEEECCTTSSCCHHHHHHHHHHHCCSEEEE
T ss_pred CCCCEEEEcCCChHHHHH---HHHHcCCEEEEecCCcCCCCCHHHHHHHhhccCCCEEEE
Confidence 577888777776655433 3345566555443 2 345677777776546666655
No 111
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=33.58 E-value=1.8e+02 Score=24.71 Aligned_cols=55 Identities=16% Similarity=0.107 Sum_probs=26.0
Q ss_pred CCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecC--C--CCCHHHHHHHHHhcCCcEEEE
Q 048729 63 QRGHVVSVVAPNVPSMYELQFGVPMSGAILNNIN--T--RLDAHTLSVLLQHSESKLVFV 118 (330)
Q Consensus 63 ~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~--~--~~~~~~l~~~l~~~~~~~i~~ 118 (330)
++||.|++..|..+.. ...-++...|+.++.++ . ..+.+.+...++..++++++.
T Consensus 107 ~~gd~Vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~ 165 (393)
T 1vjo_A 107 EPGDVVLIGVAGYFGN-RLVDMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAILAL 165 (393)
T ss_dssp CTTCEEEEEESSHHHH-HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEE
T ss_pred CCCCEEEEEcCChhHH-HHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHhhCCceEEEE
Confidence 4666666665544431 11122334455444333 2 245666666665434555443
No 112
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=33.53 E-value=84 Score=26.63 Aligned_cols=11 Identities=9% Similarity=0.015 Sum_probs=7.1
Q ss_pred CHHHHHHHHHh
Q 048729 282 TEKEIIEYCRA 292 (330)
Q Consensus 282 ~~~~l~~~l~~ 292 (330)
+..++.+.+.+
T Consensus 300 ~~~~~~~~l~~ 310 (382)
T 4eb5_A 300 EGESIVLSLDM 310 (382)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 45677777754
No 113
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=33.43 E-value=1.6e+02 Score=25.08 Aligned_cols=54 Identities=15% Similarity=0.272 Sum_probs=36.1
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecC--C---CCCHHHHHHHHHhcCCcEEEE
Q 048729 61 GIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNIN--T---RLDAHTLSVLLQHSESKLVFV 118 (330)
Q Consensus 61 g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~--~---~~~~~~l~~~l~~~~~~~i~~ 118 (330)
++++||.|.+..+.++.+... +...|+.++.++ + ....+.+...++. ++++++.
T Consensus 76 ~~~~g~~Vi~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~ 134 (390)
T 3b8x_A 76 RLKKGDEIIVPAVSWSTTYYP---LQQYGLRVKFVDIDINTLNIDIESLKEAVTD-STKAILT 134 (390)
T ss_dssp SCCTTCEEEEESSSCHHHHHH---HHHTTCEEEEECBCTTTCSBCHHHHHHHCCT-TEEEEEE
T ss_pred CCCCcCEEEECCCCcHHHHHH---HHHcCCEEEEEecCccccCcCHHHHHHHhCc-CCeEEEE
Confidence 678999999988887766543 345777665544 2 2367788877754 4566555
No 114
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=33.22 E-value=92 Score=26.31 Aligned_cols=83 Identities=11% Similarity=0.163 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHH--cCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHH---HHHHHHHhcCCcEEEEc
Q 048729 45 ETHRRCLQVASSLSS--VGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAH---TLSVLLQHSESKLVFVD 119 (330)
Q Consensus 45 el~~~~~~~a~~L~~--~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~---~l~~~l~~~~~~~i~~~ 119 (330)
.+....+.+-..+++ ..++...+..+.....+.|+.-.+++-..|..-+--....++. .+...+++.++++||+.
T Consensus 174 ~~~~~L~~Ld~~~~~~l~~~~~~~~~~v~~H~af~Yfa~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e 253 (313)
T 1toa_A 174 AYQQQLDKLDAYVRRKAQSLPAERRVLVTAHDAFGYFSRAYGFEVKGLQGVSTASEASAHDMQELAAFIAQRKLPAIFIE 253 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCGGGCEEEEEESCCHHHHHHHTCEEEEEECSSCSSCCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhhCCccCCEEEEECCcHHHHHHHCCCeEEEeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 334444444444431 1333334555666668999999888876553221112345555 45556778999999999
Q ss_pred ccchHHHH
Q 048729 120 HLHTYLLL 127 (330)
Q Consensus 120 ~~~~~~~~ 127 (330)
+..-....
T Consensus 254 ~~~~~~~~ 261 (313)
T 1toa_A 254 SSIPHKNV 261 (313)
T ss_dssp TTSCTHHH
T ss_pred CCCChHHH
Confidence 87765544
No 115
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=33.15 E-value=77 Score=26.38 Aligned_cols=82 Identities=12% Similarity=0.176 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHH-c-CCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecC--CCCCHH---HHHHHHHhcCCcE
Q 048729 43 WSETHRRCLQVASSLSS-V-GIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNIN--TRLDAH---TLSVLLQHSESKL 115 (330)
Q Consensus 43 ~~el~~~~~~~a~~L~~-~-g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~--~~~~~~---~l~~~l~~~~~~~ 115 (330)
+..+....+++-..+++ + .+ ++..+ +.....+.|+.-.+++-..+.. -++ ...++. .+...+++.++++
T Consensus 156 ~~~~~~~L~~Ld~~~~~~l~~~-~~~~~-v~~H~af~Yf~~~yGl~~~~~~--~~~~~~eps~~~l~~l~~~ik~~~v~~ 231 (286)
T 3gi1_A 156 AKAFKKEAEQLTEEYTQKFKKV-RSKTF-VTQHTAFSYLAKRFGLKQLGIS--GISPEQEPSPRQLKEIQDFVKEYNVKT 231 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-SCCEE-EEEESCCHHHHHHTTCEEEEEE--CSCC---CCHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-CCCEE-EEECCchHHHHHHCCCeEeecc--ccCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 34444555555555542 2 33 44444 4555688999888887766532 232 234454 5666678889999
Q ss_pred EEEcccchHHHHH
Q 048729 116 VFVDHLHTYLLLE 128 (330)
Q Consensus 116 i~~~~~~~~~~~~ 128 (330)
||+.+.+-.....
T Consensus 232 if~e~~~~~~~~~ 244 (286)
T 3gi1_A 232 IFAEDNVNPKIAH 244 (286)
T ss_dssp EEECTTSCTHHHH
T ss_pred EEEeCCCChHHHH
Confidence 9999877765443
No 116
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=32.76 E-value=1.9e+02 Score=24.53 Aligned_cols=56 Identities=13% Similarity=0.091 Sum_probs=29.8
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecC--C--CCCHHHHHHHHHhcCCcEEEE
Q 048729 62 IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNIN--T--RLDAHTLSVLLQHSESKLVFV 118 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~--~--~~~~~~l~~~l~~~~~~~i~~ 118 (330)
+++||.|++..+..+... ..-.+-..|+.++.++ . ..+.+.+...++..++++++.
T Consensus 91 ~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~ 150 (393)
T 2huf_A 91 LEDGDVILIGHTGHWGDR-SADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSVLFL 150 (393)
T ss_dssp CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEE
T ss_pred hCCCCEEEEECCCcchHH-HHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhccCCcEEEE
Confidence 357777777766654432 1111233565544443 2 355677777776545565554
No 117
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=32.62 E-value=77 Score=26.28 Aligned_cols=61 Identities=20% Similarity=0.222 Sum_probs=40.8
Q ss_pred EEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHH---HHHHHHHhcCCcEEEEcccchHHHHH
Q 048729 68 VSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAH---TLSVLLQHSESKLVFVDHLHTYLLLE 128 (330)
Q Consensus 68 V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~---~l~~~l~~~~~~~i~~~~~~~~~~~~ 128 (330)
..+.....+.|+.-.+++-..|..-+--....++. .+...+++.++++||+.+.+-....+
T Consensus 176 ~~v~~H~af~Yf~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~ 239 (284)
T 2prs_A 176 GYFVFHDAYGYFEKQFGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVVE 239 (284)
T ss_dssp CEEEEESCCHHHHHHHTCCCCEEEESSTTSCCCHHHHHHHHHHHHHTTCCEEEECTTSCSHHHH
T ss_pred eEEEECccHHHHHHHCCCeEeEeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChHHHH
Confidence 34455567999999999987665432222345555 45556778999999999877654443
No 118
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=32.49 E-value=1.5e+02 Score=25.23 Aligned_cols=53 Identities=17% Similarity=0.328 Sum_probs=33.8
Q ss_pred CCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCC--C-----CCHHHHHHHHHhcCCcEEEE
Q 048729 63 QRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINT--R-----LDAHTLSVLLQHSESKLVFV 118 (330)
Q Consensus 63 ~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~--~-----~~~~~l~~~l~~~~~~~i~~ 118 (330)
++||.|++..|..+.+... +...|+.++.++. . ...+.+...++..++++++.
T Consensus 109 ~~gd~vl~~~p~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l 168 (390)
T 1d2f_A 109 ETGEGVVIHTPAYDAFYKA---IEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLL 168 (390)
T ss_dssp CTTCEEEEEESCCHHHHHH---HHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEE
T ss_pred CCCCEEEEcCCCcHHHHHH---HHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEE
Confidence 5788888887776665433 3455765554432 1 56788888887656666654
No 119
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=32.48 E-value=1.6e+02 Score=25.57 Aligned_cols=60 Identities=10% Similarity=0.109 Sum_probs=38.1
Q ss_pred CCCCCCEEEEECCCCHH------HHHHHHHhh-hcCcEEeecCCC--------CC----HHHHHHHHHhcCCcEEEEcc
Q 048729 61 GIQRGHVVSVVAPNVPS------MYELQFGVP-MSGAILNNINTR--------LD----AHTLSVLLQHSESKLVFVDH 120 (330)
Q Consensus 61 g~~~gd~V~~~~~~~~~------~~~~~la~~-~~G~~~~~l~~~--------~~----~~~l~~~l~~~~~~~i~~~~ 120 (330)
.+++||+|++++|.+.- -+-.-...+ ..|..++.-+.. -+ ++++..++.+-.++.|++..
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 58999999999998732 122222223 468877654321 11 34677777777889999864
No 120
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=32.25 E-value=1.6e+02 Score=25.43 Aligned_cols=55 Identities=18% Similarity=0.168 Sum_probs=39.6
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcc
Q 048729 62 IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDH 120 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~ 120 (330)
.++||.|++-.+.+..+. .++...|+.+++++. ...+.+...++..+++++++.+
T Consensus 140 ~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~~~~-~d~~~le~~l~~~~~~~vi~~~ 194 (409)
T 3kki_A 140 CQPNTNVYIDFFAHMSLW---EGARYANAQAHPFMH-NNCDHLRMLIQRHGPGIIVVDS 194 (409)
T ss_dssp CCTTCEEEEETTSCHHHH---HHHHHTTCEEEEECT-TCHHHHHHHHHHHCSCEEEEES
T ss_pred cCCCCEEEECCCcCHHHH---HHHHHcCCeEEEecC-CCHHHHHHHHHhcCCeEEEECC
Confidence 468999988777765544 345566888877754 5688898888877677777654
No 121
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=32.15 E-value=1.9e+02 Score=24.34 Aligned_cols=63 Identities=11% Similarity=0.122 Sum_probs=38.5
Q ss_pred HHcC-CCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEccc
Q 048729 58 SSVG-IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHL 121 (330)
Q Consensus 58 ~~~g-~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~ 121 (330)
.+.| +++++.|.....-+....++ +++...|..++.+-|...+......++.++++++++...
T Consensus 65 ~~~g~l~~~~~vv~aSsGN~g~alA-~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 128 (325)
T 3dwg_A 65 EADGLLRPGATILEPTSGNTGISLA-MAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAE 128 (325)
T ss_dssp HHTTCCCTTCEEEEECSSHHHHHHH-HHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECST
T ss_pred HHcCCCCCCCEEEEeCCcHHHHHHH-HHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 3344 56777766654433444333 555677875554433333445566889999999999763
No 122
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=32.07 E-value=1.5e+02 Score=25.57 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=30.8
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHhhhcCc--EEeec--C---CCCCHHHHHHHHHhcCCcEEEEc
Q 048729 62 IQRGHVVSVVAPNVPSMYELQFGVPMSGA--ILNNI--N---TRLDAHTLSVLLQHSESKLVFVD 119 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~la~~~~G~--~~~~l--~---~~~~~~~l~~~l~~~~~~~i~~~ 119 (330)
+++||.|++..+.....+.....+...|. .++++ + .....+.+...+++.++++++..
T Consensus 115 ~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~ 179 (425)
T 3ecd_A 115 AKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAG 179 (425)
T ss_dssp CCTTCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEEE
T ss_pred cCCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhcCCcEEEEc
Confidence 57899999988876552211111112333 44444 3 24578899999987788888776
No 123
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=31.65 E-value=81 Score=26.62 Aligned_cols=62 Identities=6% Similarity=0.100 Sum_probs=39.3
Q ss_pred EEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHHHH---HHHHHhcCCcEEEEcccchHHHHH
Q 048729 67 VVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTL---SVLLQHSESKLVFVDHLHTYLLLE 128 (330)
Q Consensus 67 ~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~l---~~~l~~~~~~~i~~~~~~~~~~~~ 128 (330)
+..+.....+.|+.-.|++-..|..-+--....++.++ ...+++.++++||+.+.+-.....
T Consensus 191 ~~~v~~H~af~Yfa~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~ 255 (312)
T 2o1e_A 191 KEFITQHTAFGYLAKEYGLKQVPIAGLSPDQEPSAASLAKLKTYAKEHNVKVIYFEEIASSKVAD 255 (312)
T ss_dssp CEEEESSCTTHHHHHHTTCEEEECSSCCSSSCCCHHHHHHHHHHTTSSCCCEEECSSCCCHHHHH
T ss_pred CEEEEECCchHHHHHHCCCeEEEeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChHHHH
Confidence 44566677889988877776554321111234556554 445567889999999887765443
No 124
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=31.64 E-value=1.5e+02 Score=25.35 Aligned_cols=53 Identities=13% Similarity=0.217 Sum_probs=31.8
Q ss_pred CCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCC-------CCHHHHHHHHHhcCCcEEEE
Q 048729 63 QRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTR-------LDAHTLSVLLQHSESKLVFV 118 (330)
Q Consensus 63 ~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~-------~~~~~l~~~l~~~~~~~i~~ 118 (330)
++||.|++..|..+.+.. ++...|+.++.++.. ...+.+...+++.++++++.
T Consensus 111 ~~gd~vl~~~p~~~~~~~---~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~ 170 (399)
T 1c7n_A 111 KPGDGVIIITPVYYPFFM---AIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLF 170 (399)
T ss_dssp CTTCEEEECSSCCTHHHH---HHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEE
T ss_pred CCCCEEEEcCCCcHhHHH---HHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEE
Confidence 567777777666555433 234557666555431 56777777776555666554
No 125
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=31.56 E-value=1.7e+02 Score=24.99 Aligned_cols=60 Identities=13% Similarity=0.181 Sum_probs=38.5
Q ss_pred CCCCCCEEEEECCCCH-H-----HHHHHHHhh-hcCcEEeecCCC--------CC----HHHHHHHHHhcCCcEEEEcc
Q 048729 61 GIQRGHVVSVVAPNVP-S-----MYELQFGVP-MSGAILNNINTR--------LD----AHTLSVLLQHSESKLVFVDH 120 (330)
Q Consensus 61 g~~~gd~V~~~~~~~~-~-----~~~~~la~~-~~G~~~~~l~~~--------~~----~~~l~~~l~~~~~~~i~~~~ 120 (330)
.+++||+|++++|.+. . -+-.-...+ ..|..++.-+.- -+ ++++..++.+-.++.|++..
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 86 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTL 86 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 4789999999999873 1 122222233 468877654311 11 34677777888899999864
No 126
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=31.54 E-value=1.1e+02 Score=20.45 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHhcC--------------CCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC
Q 048729 14 PLTTLGFLERAAAAYT--------------DCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPN 74 (330)
Q Consensus 14 ~~~~~~~l~~~~~~~p--------------~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~ 74 (330)
..|+.+++......+| ...++.-.++-+.+ ..-++.||.|+++-|-
T Consensus 36 ~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~---------------~~~L~dGDeV~i~ppv 95 (98)
T 1vjk_A 36 GARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW---------------DEELKDGDVVGVFPPV 95 (98)
T ss_dssp TCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT---------------TCBCCTTCEEEEESCC
T ss_pred CCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC---------------CCCCCCCCEEEEECCC
Confidence 4699999998888775 44555555555542 4468999999998764
No 127
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=31.19 E-value=1.4e+02 Score=21.10 Aligned_cols=62 Identities=16% Similarity=0.155 Sum_probs=37.5
Q ss_pred HHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecC--CCCCHH---HHHHHHHhcCCcE
Q 048729 54 ASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNIN--TRLDAH---TLSVLLQHSESKL 115 (330)
Q Consensus 54 a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~--~~~~~~---~l~~~l~~~~~~~ 115 (330)
+.+|.+.|+.++..+.+-..+..+.+.++-=++++|.+...+- +..+.. ++....+..+...
T Consensus 47 ~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrsg~~~aVl~wl~~l~~~~~RRLqlAA~~g~~~~ 113 (119)
T 1ofu_X 47 HEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAARKQLSRAAQLGQAQS 113 (119)
T ss_dssp HHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTCEEEEEECCSSCCHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhcCCccEEEECCCcCChHHHHHHHHHHHhCCCeE
Confidence 5667788998876666655566777777777778877544442 345543 3443444444433
No 128
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=31.09 E-value=1.1e+02 Score=25.73 Aligned_cols=55 Identities=13% Similarity=0.214 Sum_probs=36.9
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecC--C--CCCHHHHHHHHHhcCCcEEEEc
Q 048729 62 IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNIN--T--RLDAHTLSVLLQHSESKLVFVD 119 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~--~--~~~~~~l~~~l~~~~~~~i~~~ 119 (330)
+++||.|++..+....+... +...|+.++.++ + ....+.+...++..++++++..
T Consensus 106 ~~~gd~Vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~ 164 (367)
T 3euc_A 106 ARPGAKVMAPVPGFVMYAMS---AQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLA 164 (367)
T ss_dssp CCTTCEEEEEESCSCCSCHH---HHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEE
T ss_pred cCCCCEEEEcCCCHHHHHHH---HHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEc
Confidence 46889888887776554332 345677555544 3 4578888888887677777653
No 129
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=31.08 E-value=83 Score=26.56 Aligned_cols=13 Identities=8% Similarity=-0.069 Sum_probs=8.6
Q ss_pred CCHHHHHHHHHhc
Q 048729 281 PTEKEIIEYCRAR 293 (330)
Q Consensus 281 ~~~~~l~~~l~~~ 293 (330)
.+..++.+.+.++
T Consensus 299 ~~~~~~~~~l~~~ 311 (382)
T 4hvk_A 299 IEGESIVLSLDMA 311 (382)
T ss_dssp CCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHC
Confidence 3567777777664
No 130
>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A
Probab=31.04 E-value=1.5e+02 Score=26.30 Aligned_cols=76 Identities=17% Similarity=0.249 Sum_probs=47.4
Q ss_pred eecHHHHHHHHHHHHH---HHHH---cCCCCCCEEEEECCCC-HHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcC
Q 048729 40 TYTWSETHRRCLQVAS---SLSS---VGIQRGHVVSVVAPNV-PSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSE 112 (330)
Q Consensus 40 ~~T~~el~~~~~~~a~---~L~~---~g~~~gd~V~~~~~~~-~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~ 112 (330)
.+++.+.......... .|.. .++++|++|++....+ ...+++.+| ...|+.++.+.. +++++. ++++.+
T Consensus 198 ~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqla-k~~Ga~vi~~~~--~~~~~~-~~~~lG 273 (456)
T 3krt_A 198 HLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFA-LAGGANPICVVS--SPQKAE-ICRAMG 273 (456)
T ss_dssp TSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEES--SHHHHH-HHHHHT
T ss_pred CCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHH-HHcCCeEEEEEC--CHHHHH-HHHhhC
Confidence 4777776532222222 2222 5899999999999855 566665555 467987766653 455544 567788
Q ss_pred CcEEEEc
Q 048729 113 SKLVFVD 119 (330)
Q Consensus 113 ~~~i~~~ 119 (330)
++.++..
T Consensus 274 a~~vi~~ 280 (456)
T 3krt_A 274 AEAIIDR 280 (456)
T ss_dssp CCEEEET
T ss_pred CcEEEec
Confidence 8877653
No 131
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=30.72 E-value=2.6e+02 Score=24.17 Aligned_cols=55 Identities=22% Similarity=0.284 Sum_probs=39.5
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhc---CCcEEEEcc
Q 048729 62 IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHS---ESKLVFVDH 120 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~---~~~~i~~~~ 120 (330)
.++||.|++..+.+..+.. ++...|+.++.++ ....+.+...++.. +++++++.+
T Consensus 145 ~~~gd~vl~~~~~h~~~~~---~~~~~g~~~~~~~-~~d~~~le~~l~~~~~~~~~~v~~~~ 202 (427)
T 2w8t_A 145 AGKGEYVILDADSHASIYD---GCQQGNAEIVRFR-HNSVEDLDKRLGRLPKEPAKLVVLEG 202 (427)
T ss_dssp SCTTCEEEEETTCCHHHHH---HHHHSCSEEEEEC-TTCHHHHHHHHHTSCSSSCEEEEEES
T ss_pred cCCCCEEEECCcccHHHHH---HHHHcCCeeEEeC-CCCHHHHHHHHHhccCCCCeEEEEcC
Confidence 3689999888887765543 3456788877776 46788888888875 667777654
No 132
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=30.63 E-value=2.3e+02 Score=23.83 Aligned_cols=56 Identities=14% Similarity=0.084 Sum_probs=30.4
Q ss_pred CCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCC----CCCHHHHHHHHHh-cCCcEEEEc
Q 048729 63 QRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINT----RLDAHTLSVLLQH-SESKLVFVD 119 (330)
Q Consensus 63 ~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~----~~~~~~l~~~l~~-~~~~~i~~~ 119 (330)
++||.|++..+..+... ..-++...|+.++.++. ....+.+...+++ .++++++..
T Consensus 93 ~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~ 153 (386)
T 2dr1_A 93 SKGGKVLVTIIGAFGKR-YKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTIT 153 (386)
T ss_dssp CTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred cCCCeEEEEcCCchhHH-HHHHHHHhCCceEEEecCCCCCCCHHHHHHHHhcCCCCcEEEEE
Confidence 56777777766554421 12233445665544432 2567777777754 356665543
No 133
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=30.26 E-value=1.1e+02 Score=19.59 Aligned_cols=49 Identities=22% Similarity=0.194 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCC
Q 048729 235 SAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRY 297 (330)
Q Consensus 235 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 297 (330)
..++++.+.+.|.|.+|..+.-..+ ..+-+.. .+.+++.+.+.+++...
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~~D-----~ll~v~~---------~d~~~l~~~i~~~l~~~ 63 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGEYD-----LIVKVET---------DTLKDLDQFITEKIRKM 63 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSSCS-----EEEEEEE---------SSHHHHHHHHHTTGGGC
T ss_pred HHHHHHHHhCCCCeeEEEEEcccCC-----EEEEEEE---------CCHHHHHHHHHHHhccC
Confidence 4789999999999999998754332 2222222 35678888777666444
No 134
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=30.02 E-value=97 Score=26.28 Aligned_cols=82 Identities=10% Similarity=0.066 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHH-c-CCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecC--CCCCHH---HHHHHHHhcCCcEE
Q 048729 44 SETHRRCLQVASSLSS-V-GIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNIN--TRLDAH---TLSVLLQHSESKLV 116 (330)
Q Consensus 44 ~el~~~~~~~a~~L~~-~-g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~--~~~~~~---~l~~~l~~~~~~~i 116 (330)
..+......+-..+++ + .+....+..+.....+.|+.-.+++-..|. ..++ ...++. .+...+++.++++|
T Consensus 180 ~~~~~~L~~Ld~~~~~~l~~~~~~~r~~v~~H~af~Yfa~~yGL~~~~~--~~~~~~~eps~~~l~~l~~~ik~~~v~~I 257 (321)
T 1xvl_A 180 AVYSEQLKAIDRQLGADLEQVPANQRFLVSCEGAFSYLARDYGMEEIYM--WPINAEQQFTPKQVQTVIEEVKTNNVPTI 257 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCGGGCEEEEEESTTHHHHHHTTCEEEEE--ESSSSSCSCCHHHHHHHHHHHHTTTCSEE
T ss_pred HHHHHHHHHHHHHHHHHHhhCcccCCEEEEECchHHHHHHHCCCeEEEe--eccCCCCCCCHHHHHHHHHHHHHcCCcEE
Confidence 3444444444444442 1 333234555666678999998888876552 2333 344555 45556788899999
Q ss_pred EEcccchHHHH
Q 048729 117 FVDHLHTYLLL 127 (330)
Q Consensus 117 ~~~~~~~~~~~ 127 (330)
|+.+..-....
T Consensus 258 f~e~~~~~~~~ 268 (321)
T 1xvl_A 258 FCESTVSDKGQ 268 (321)
T ss_dssp EEETTSCSHHH
T ss_pred EEeCCCChHHH
Confidence 99887765444
No 135
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=29.95 E-value=1.2e+02 Score=26.13 Aligned_cols=56 Identities=21% Similarity=0.251 Sum_probs=27.4
Q ss_pred CCCCCEEEEECCCCHHHHHHHH-HhhhcCcEEeecCC--C--CCHHHHHHHHHhcCCcEEEE
Q 048729 62 IQRGHVVSVVAPNVPSMYELQF-GVPMSGAILNNINT--R--LDAHTLSVLLQHSESKLVFV 118 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~l-a~~~~G~~~~~l~~--~--~~~~~l~~~l~~~~~~~i~~ 118 (330)
+++||.|++..+..+.....+. .+...|+.++.++. . ...+.+...++. ++++++.
T Consensus 115 ~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~ 175 (420)
T 1t3i_A 115 LKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSE-KTKLVTV 175 (420)
T ss_dssp CCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCT-TEEEEEE
T ss_pred cCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhhCC-CceEEEE
Confidence 4667777776666655432221 22234554443332 1 345666655543 3444443
No 136
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=29.79 E-value=1.5e+02 Score=24.99 Aligned_cols=77 Identities=12% Similarity=0.008 Sum_probs=48.8
Q ss_pred ecHHHHHHHHHH---HHHHHHHc--CCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcE
Q 048729 41 YTWSETHRRCLQ---VASSLSSV--GIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKL 115 (330)
Q Consensus 41 ~T~~el~~~~~~---~a~~L~~~--g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ 115 (330)
+++.+....... ..+.|... ++++|++|++...-....+...+|-..-|+.++.+.. ++++ ..++++.+++.
T Consensus 143 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~--~~~~-~~~~~~lGa~~ 219 (345)
T 3jv7_A 143 LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDL--DDDR-LALAREVGADA 219 (345)
T ss_dssp CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--CHHH-HHHHHHTTCSE
T ss_pred CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--CHHH-HHHHHHcCCCE
Confidence 677665432221 22334443 7899999999987556777777776555777766654 3343 44667888887
Q ss_pred EEEcc
Q 048729 116 VFVDH 120 (330)
Q Consensus 116 i~~~~ 120 (330)
++...
T Consensus 220 ~i~~~ 224 (345)
T 3jv7_A 220 AVKSG 224 (345)
T ss_dssp EEECS
T ss_pred EEcCC
Confidence 77543
No 137
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=29.73 E-value=2.2e+02 Score=24.46 Aligned_cols=54 Identities=4% Similarity=0.092 Sum_probs=34.6
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCC-----CCCHHHHHHHHHhc---CCc-EEEE
Q 048729 62 IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINT-----RLDAHTLSVLLQHS---ESK-LVFV 118 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~-----~~~~~~l~~~l~~~---~~~-~i~~ 118 (330)
+++||.|++..|....+... +...|+.++.++. .+..+.+...++.. +.+ +++.
T Consensus 122 ~~~gd~Vl~~~p~~~~~~~~---~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~ 184 (413)
T 3t18_A 122 LDEGDPLICHDYYWAPYRKI---CEEFGRNFKTFEFFTDDFAFNIDVYKEAIDEGIRDSDRIASLI 184 (413)
T ss_dssp CCSSCEEEEESSCCTHHHHH---HHHHTCEEEEECCBCTTSSBCHHHHHHHHHHHHHHCSEEEEEE
T ss_pred cCCCCEEEECCCCcccHHHH---HHHhCCeEEEeeccCCCCCcCHHHHHHHHHHHhhcCCCEEEEE
Confidence 46889998888876655432 3456776665553 45678888888763 555 4443
No 138
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=29.60 E-value=1.9e+02 Score=24.98 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=33.5
Q ss_pred CCCCCEEEEECCCCHHHHHHHHH-hhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729 62 IQRGHVVSVVAPNVPSMYELQFG-VPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV 118 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~la-~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~ 118 (330)
+++||.|.+..+........+.. +...|+.+..++.. .+.+...++. ++++++.
T Consensus 92 ~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~l~~~i~~-~~~~v~~ 146 (412)
T 2cb1_A 92 LRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDPE--PEAVREALSA-KTRAVFV 146 (412)
T ss_dssp CCTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECSS--HHHHHHHCCT-TEEEEEE
T ss_pred hCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC--HHHHHHHhcc-CCeEEEE
Confidence 56888888888777655444332 44567776666643 6666666643 4555554
No 139
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=29.54 E-value=1.6e+02 Score=24.88 Aligned_cols=57 Identities=12% Similarity=0.085 Sum_probs=27.9
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecC--C--CCCHHHHHHHHHhcCCcEEEEc
Q 048729 62 IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNIN--T--RLDAHTLSVLLQHSESKLVFVD 119 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~--~--~~~~~~l~~~l~~~~~~~i~~~ 119 (330)
+++||.|++..+..+... ..-++...|+.++.++ . .+..+.+...++..++++++..
T Consensus 95 ~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~ 155 (393)
T 3kgw_A 95 LEPGDSFLTGTNGIWGMR-AAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLV 155 (393)
T ss_dssp CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEE
T ss_pred CCCCCEEEEEeCCchhHH-HHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCcEEEEe
Confidence 356676666643332111 1222334455444332 2 3456677777766556655443
No 140
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=29.26 E-value=1.4e+02 Score=25.50 Aligned_cols=57 Identities=21% Similarity=0.306 Sum_probs=36.5
Q ss_pred HHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecC--C---CCCHHHHHHHHHhcCCcEEE
Q 048729 57 LSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNIN--T---RLDAHTLSVLLQHSESKLVF 117 (330)
Q Consensus 57 L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~--~---~~~~~~l~~~l~~~~~~~i~ 117 (330)
+..+++++||.|++..+.++.+.. ++...|+.++.++ + .+..+.+...++. ++++++
T Consensus 70 l~~l~~~~gd~Vi~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~ 131 (388)
T 1b9h_A 70 LQVMGVGPGTEVIVPAFTFISSSQ---AAQRLGAVTVPVDVDAATYNLDPEAVAAAVTP-RTKVIM 131 (388)
T ss_dssp HHHTTCCTTCEEEEESSSCTHHHH---HHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-TEEEEC
T ss_pred HHHcCCCCcCEEEECCCccHHHHH---HHHHcCCEEEEEecCCCcCCCCHHHHHHhcCc-CceEEE
Confidence 334457889999988888776643 3456777665554 2 3467787777753 445554
No 141
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Probab=29.07 E-value=1.5e+02 Score=25.26 Aligned_cols=79 Identities=13% Similarity=0.053 Sum_probs=47.5
Q ss_pred eecHHHHHHHH---HHHHHHHHH-cCCCCC-CEEEEECCCC-HHHHHHHHHhhhcCcEEeecCCCCCH-HHHHHHHHhcC
Q 048729 40 TYTWSETHRRC---LQVASSLSS-VGIQRG-HVVSVVAPNV-PSMYELQFGVPMSGAILNNINTRLDA-HTLSVLLQHSE 112 (330)
Q Consensus 40 ~~T~~el~~~~---~~~a~~L~~-~g~~~g-d~V~~~~~~~-~~~~~~~la~~~~G~~~~~l~~~~~~-~~l~~~l~~~~ 112 (330)
.+++.+..... ....+.|.+ .++++| ++|++....+ ...+++.+|- ..|+.++.+...... ++....+++.+
T Consensus 138 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lG 216 (364)
T 1gu7_A 138 GLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGK-LLNFNSISVIRDRPNLDEVVASLKELG 216 (364)
T ss_dssp CCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHH-HHTCEEEEEECCCTTHHHHHHHHHHHT
T ss_pred CCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHH-HCCCEEEEEecCccccHHHHHHHHhcC
Confidence 46776654322 111223444 489999 9999998854 6666666655 568876655433332 34445567888
Q ss_pred CcEEEEc
Q 048729 113 SKLVFVD 119 (330)
Q Consensus 113 ~~~i~~~ 119 (330)
++.++..
T Consensus 217 a~~vi~~ 223 (364)
T 1gu7_A 217 ATQVITE 223 (364)
T ss_dssp CSEEEEH
T ss_pred CeEEEec
Confidence 8877653
No 142
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=29.06 E-value=84 Score=26.26 Aligned_cols=82 Identities=15% Similarity=0.135 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHH-c-CCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecC--CCCCHH---HHHHHHHhcCCcE
Q 048729 43 WSETHRRCLQVASSLSS-V-GIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNIN--TRLDAH---TLSVLLQHSESKL 115 (330)
Q Consensus 43 ~~el~~~~~~~a~~L~~-~-g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~--~~~~~~---~l~~~l~~~~~~~ 115 (330)
+..+....+.+-..+++ + .++.+++..+.....+.|+.-.+++-..+.. -++ ...++. .+...+++.++++
T Consensus 158 ~~~~~~~L~~Ld~~~~~~l~~~~~~~~~~v~~H~af~Yf~~~yGl~~~~~~--~~~~~~eps~~~l~~l~~~ik~~~v~~ 235 (294)
T 3hh8_A 158 LKAYVAKLEKLDKEAKSKFDAIAENKKLIVTSEGCFKYFSKAYGVPSAYIW--EINTEEEGTPDQISSLIEKLKVIKPSA 235 (294)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSCGGGCCEEEEESCCHHHHHHHTCCEEEEE--SSCCSCCCCHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCccCcEEEEECChHHHHHHHcCCceeecc--ccCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 34444445555555543 1 3333335555666689999998888754422 232 234454 5666777889999
Q ss_pred EEEcccchHHH
Q 048729 116 VFVDHLHTYLL 126 (330)
Q Consensus 116 i~~~~~~~~~~ 126 (330)
||+.+.+-...
T Consensus 236 if~e~~~~~~~ 246 (294)
T 3hh8_A 236 LFVESSVDRRP 246 (294)
T ss_dssp EEEETTSCSHH
T ss_pred EEEeCCCCcHH
Confidence 99988766543
No 143
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=28.89 E-value=1.5e+02 Score=25.22 Aligned_cols=52 Identities=12% Similarity=0.115 Sum_probs=32.7
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCC--------CCHHHHHHHHHhcCCcEEEE
Q 048729 62 IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTR--------LDAHTLSVLLQHSESKLVFV 118 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~--------~~~~~l~~~l~~~~~~~i~~ 118 (330)
.++||.|++..|....+.. ++...|+.++.++.. ...+.+...++. +++++.
T Consensus 111 ~~~gd~vl~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~--~~~v~i 170 (391)
T 4dq6_A 111 TKANDKIMIQEPVYSPFNS---VVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD--VKLFIL 170 (391)
T ss_dssp SCTTCEEEECSSCCTHHHH---HHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT--EEEEEE
T ss_pred CCCCCEEEEcCCCCHHHHH---HHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc--CCEEEE
Confidence 3678888877776665443 334567766655533 567788877776 555543
No 144
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=28.57 E-value=2.5e+02 Score=24.13 Aligned_cols=47 Identities=9% Similarity=-0.017 Sum_probs=31.5
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCC-----CCCHHHHHHHHHhc
Q 048729 62 IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINT-----RLDAHTLSVLLQHS 111 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~-----~~~~~~l~~~l~~~ 111 (330)
+++||.|++..|....+.. ++...|+.++.++. .+..+.+...++..
T Consensus 123 ~~~gd~Vl~~~p~~~~~~~---~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~ 174 (418)
T 3rq1_A 123 TEPGDEVLTADWYWGAYRV---ICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNEL 174 (418)
T ss_dssp SCTTCEEEEESSCCTHHHH---HHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHH
T ss_pred cCCCCEEEECCCCchhHHH---HHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHh
Confidence 4688998888877766543 34556776665542 45678888887763
No 145
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=28.50 E-value=2.5e+02 Score=23.45 Aligned_cols=62 Identities=19% Similarity=0.201 Sum_probs=36.4
Q ss_pred HHcC-CCCCC-EEEEECCCCHHHHHHHHHhhhcCcEEeec-CCCCCHHHHHHHHHhcCCcEEEEccc
Q 048729 58 SSVG-IQRGH-VVSVVAPNVPSMYELQFGVPMSGAILNNI-NTRLDAHTLSVLLQHSESKLVFVDHL 121 (330)
Q Consensus 58 ~~~g-~~~gd-~V~~~~~~~~~~~~~~la~~~~G~~~~~l-~~~~~~~~l~~~l~~~~~~~i~~~~~ 121 (330)
.+.| +++|. .|.. ...+=.-....+++...|..++.+ +...+ ..-...++.++++++++...
T Consensus 58 ~~~G~~~~~~~~vv~-assGN~g~alA~aa~~~G~~~~iv~p~~~~-~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 58 EKKGLIKPGESVLIE-PTSGNTGVGLAFTAAAKGYKLIITMPASMS-TERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHTTSCCTTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSC-HHHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC
Confidence 3445 46664 4444 333322233335566888855544 44444 44556889999999998754
No 146
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=28.20 E-value=2.7e+02 Score=23.78 Aligned_cols=59 Identities=17% Similarity=0.245 Sum_probs=39.8
Q ss_pred HHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCc-EEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729 56 SLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGA-ILNNINTRLDAHTLSVLLQHSESKLVFV 118 (330)
Q Consensus 56 ~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~-~~~~l~~~~~~~~l~~~l~~~~~~~i~~ 118 (330)
.+...++++|++|++...-....+++.+|- ..|+ .++.+.. +++. ..++++.+++.++.
T Consensus 174 ~l~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~--~~~~-~~~a~~lGa~~vi~ 233 (370)
T 4ej6_A 174 GVDLSGIKAGSTVAILGGGVIGLLTVQLAR-LAGATTVILSTR--QATK-RRLAEEVGATATVD 233 (370)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECS--CHHH-HHHHHHHTCSEEEC
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECC--CHHH-HHHHHHcCCCEEEC
Confidence 345678999999999987445666665554 6788 6666654 2333 44677788877664
No 147
>2pfu_A Biopolymer transport EXBD protein; TONB system, proton motive force, periplasmic domain; NMR {Escherichia coli}
Probab=28.07 E-value=78 Score=21.11 Aligned_cols=28 Identities=7% Similarity=0.036 Sum_probs=12.8
Q ss_pred CCCEEEEECCCC--HHHHHHHH-HhhhcCcE
Q 048729 64 RGHVVSVVAPNV--PSMYELQF-GVPMSGAI 91 (330)
Q Consensus 64 ~gd~V~~~~~~~--~~~~~~~l-a~~~~G~~ 91 (330)
+...|.+.+... +..++-++ +|-.+|..
T Consensus 56 ~~~~V~I~aD~~~~y~~vv~vmd~l~~aG~~ 86 (99)
T 2pfu_A 56 KDTTIFFRADKTVDYETLMKVMDTLHQAGYL 86 (99)
T ss_dssp CSSCEEEEECTTCCHHHHHHHHHHHHHTCCC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHcCCC
Confidence 344566666554 33343333 33345553
No 148
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=28.03 E-value=2.6e+02 Score=23.25 Aligned_cols=63 Identities=11% Similarity=0.104 Sum_probs=37.3
Q ss_pred HHHcCC-CCCCEEEEECCCCHHHHHHHHHhhhcCcEEee-cCCCCCHHHHHHHHHhcCCcEEEEccc
Q 048729 57 LSSVGI-QRGHVVSVVAPNVPSMYELQFGVPMSGAILNN-INTRLDAHTLSVLLQHSESKLVFVDHL 121 (330)
Q Consensus 57 L~~~g~-~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~-l~~~~~~~~l~~~l~~~~~~~i~~~~~ 121 (330)
+.+.|. ++|+.|.....-+....++ +++...|..++. ++...+. .-...++.++++++++...
T Consensus 53 a~~~g~~~~~~~vv~~ssGN~g~a~A-~~a~~~G~~~~iv~p~~~~~-~k~~~~~~~GA~v~~~~~~ 117 (316)
T 1y7l_A 53 AEKDGTLTKGKEIVDATSGNTGIALA-YVAAARGYKITLTMPETMSL-ERKRLLCGLGVNLVLTEGA 117 (316)
T ss_dssp HHHTTSSCTTCEEEESCCSHHHHHHH-HHHHHHTCCEEEEEETTSCH-HHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEEeCCcHHHHHHH-HHHHHcCCcEEEEECCCCCH-HHHHHHHHcCCEEEEeCCC
Confidence 344454 6666655554333443333 455577774443 4445554 4556889999999998764
No 149
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=28.00 E-value=1.7e+02 Score=25.92 Aligned_cols=59 Identities=10% Similarity=0.206 Sum_probs=38.8
Q ss_pred CCCCCEEEEEC-CCCHHHHHHH--------HHhhhcCcEEeecCC---CCCHHHHHHHHHh-cCCcEEEEcc
Q 048729 62 IQRGHVVSVVA-PNVPSMYELQ--------FGVPMSGAILNNINT---RLDAHTLSVLLQH-SESKLVFVDH 120 (330)
Q Consensus 62 ~~~gd~V~~~~-~~~~~~~~~~--------la~~~~G~~~~~l~~---~~~~~~l~~~l~~-~~~~~i~~~~ 120 (330)
+++||.|++.. +....+...+ -.+...|+.+..++. ....+.+...+++ .++++|++..
T Consensus 113 l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~~~tklV~i~~ 184 (427)
T 3hvy_A 113 LRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQR 184 (427)
T ss_dssp CCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCCBTTBCCHHHHHHHHHHCTTEEEEEEES
T ss_pred cCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecCCCCCcCHHHHHHHhhCCCCCEEEEEEC
Confidence 68999998876 4444333222 123356887776654 3667888888875 5778887765
No 150
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=27.50 E-value=1.2e+02 Score=25.71 Aligned_cols=76 Identities=9% Similarity=-0.015 Sum_probs=47.2
Q ss_pred eecHHHHHHHHH---HHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCc-EEeecCCCCCHHHHHHHHHhcCCcE
Q 048729 40 TYTWSETHRRCL---QVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGA-ILNNINTRLDAHTLSVLLQHSESKL 115 (330)
Q Consensus 40 ~~T~~el~~~~~---~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~-~~~~l~~~~~~~~l~~~l~~~~~~~ 115 (330)
.+++.+...... ...+.+...++++||+|++...-....+...+| ...|+ .++.++. ++++ ..++++.+++.
T Consensus 139 ~~~~~~aa~~~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla-~~~Ga~~Vi~~~~--~~~~-~~~~~~lGa~~ 214 (352)
T 3fpc_A 139 EIPLEAAVMIPDMMTTGFHGAELANIKLGDTVCVIGIGPVGLMSVAGA-NHLGAGRIFAVGS--RKHC-CDIALEYGATD 214 (352)
T ss_dssp TSCHHHHTTTTTHHHHHHHHHHHTTCCTTCCEEEECCSHHHHHHHHHH-HTTTCSSEEEECC--CHHH-HHHHHHHTCCE
T ss_pred CCCHHHHhhccchhHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEECC--CHHH-HHHHHHhCCce
Confidence 466666543211 122334677899999999998644666666555 46788 5666654 2333 45677788887
Q ss_pred EEEc
Q 048729 116 VFVD 119 (330)
Q Consensus 116 i~~~ 119 (330)
++..
T Consensus 215 vi~~ 218 (352)
T 3fpc_A 215 IINY 218 (352)
T ss_dssp EECG
T ss_pred EEcC
Confidence 7653
No 151
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=27.30 E-value=1.1e+02 Score=26.61 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=34.1
Q ss_pred HHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCC-----CCCHHHHHHHHHhcCCcEEEE
Q 048729 57 LSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINT-----RLDAHTLSVLLQHSESKLVFV 118 (330)
Q Consensus 57 L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~-----~~~~~~l~~~l~~~~~~~i~~ 118 (330)
+..+++++||.|++..+....+.. ++...|+.++.++. ..+.+.+...++. ++++++.
T Consensus 74 ~~~~~~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~ 136 (418)
T 2c81_A 74 LEALGIGEGDEVIVPSLTWIATAT---AVLNVNALPVFVDVEADTYCIDPQLIKSAITD-KTKAIIP 136 (418)
T ss_dssp HHHTTCCTTCEEEEESSSCTHHHH---HHHHTTCEEEEECBCTTTCSBCHHHHGGGCCT-TEEEECC
T ss_pred HHHcCCCCcCEEEECCCccHhHHH---HHHHcCCEEEEEecCCCCCCcCHHHHHHhhCC-CCeEEEE
Confidence 334456788888888877766643 33466776655542 2356666655543 4455543
No 152
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=27.24 E-value=1.7e+02 Score=21.99 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=17.5
Q ss_pred HHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcE
Q 048729 55 SSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAI 91 (330)
Q Consensus 55 ~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~ 91 (330)
.+|.+.|+.+...+.+-..+..+.+.+.-=++++|.+
T Consensus 90 ~~L~~~Gl~~~rll~v~~~~~~daLwa~EqALrsG~~ 126 (161)
T 1oft_A 90 EWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRS 126 (161)
T ss_dssp HHHHHTTCCGGGEEEECCSSTTHHHHHHHHHHHTTCE
T ss_pred HHHHHcCCCHHHEEEEECCChHHHHHHHHHHHhcCCc
Confidence 3444555555443333333444555444555555543
No 153
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=27.23 E-value=1.6e+02 Score=24.96 Aligned_cols=74 Identities=19% Similarity=0.140 Sum_probs=45.9
Q ss_pred eecHHHHHHHHHHHH---HHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCc-EEeecCCCCCHHHHHHHHHhcCCcE
Q 048729 40 TYTWSETHRRCLQVA---SSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGA-ILNNINTRLDAHTLSVLLQHSESKL 115 (330)
Q Consensus 40 ~~T~~el~~~~~~~a---~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~-~~~~l~~~~~~~~l~~~l~~~~~~~ 115 (330)
.+++.+..-. ..++ +.+...++++|++|++...-........+|- ..|+ .++.+.. ++++ ..++++.+++.
T Consensus 145 ~l~~~~aa~~-~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~--~~~~-~~~a~~lGa~~ 219 (356)
T 1pl8_A 145 NVTFEEGALI-EPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAK-AMGAAQVVVTDL--SATR-LSKAKEIGADL 219 (356)
T ss_dssp TSCHHHHHHH-HHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEEES--CHHH-HHHHHHTTCSE
T ss_pred CCCHHHHHhh-chHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECC--CHHH-HHHHHHhCCCE
Confidence 4677665422 2222 2334568999999999986446666666655 5688 6665553 2333 34567788876
Q ss_pred EEE
Q 048729 116 VFV 118 (330)
Q Consensus 116 i~~ 118 (330)
++.
T Consensus 220 vi~ 222 (356)
T 1pl8_A 220 VLQ 222 (356)
T ss_dssp EEE
T ss_pred EEc
Confidence 664
No 154
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=26.92 E-value=1e+02 Score=26.61 Aligned_cols=59 Identities=10% Similarity=0.011 Sum_probs=32.1
Q ss_pred CCCCCEEEEECCCCHHHHHHHHH--hhhcCcEEeecCC----CCCHHHHHHHHHhcCCcEEEEcc
Q 048729 62 IQRGHVVSVVAPNVPSMYELQFG--VPMSGAILNNINT----RLDAHTLSVLLQHSESKLVFVDH 120 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~la--~~~~G~~~~~l~~----~~~~~~l~~~l~~~~~~~i~~~~ 120 (330)
+++||.|++..+....+...... ....+..+++++. ....+.+...+++.++++++...
T Consensus 108 ~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~ 172 (417)
T 3n0l_A 108 INPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKEKPKLIVCGA 172 (417)
T ss_dssp SCTTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHHHCCSEEEECC
T ss_pred cCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHhcCCeEEEECC
Confidence 57899999988876544332222 2223444444432 36788999999877888887654
No 155
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=26.85 E-value=1.6e+02 Score=25.96 Aligned_cols=59 Identities=10% Similarity=0.208 Sum_probs=38.1
Q ss_pred CCCCCEEEEEC-CCCHHHHHHH--------HHhhhcCcEEeecCCC----CCHHHHHHHHHh-cCCcEEEEcc
Q 048729 62 IQRGHVVSVVA-PNVPSMYELQ--------FGVPMSGAILNNINTR----LDAHTLSVLLQH-SESKLVFVDH 120 (330)
Q Consensus 62 ~~~gd~V~~~~-~~~~~~~~~~--------la~~~~G~~~~~l~~~----~~~~~l~~~l~~-~~~~~i~~~~ 120 (330)
+++||.|++.. +....+...+ -.+...|+.+..++.. ...+.+...+++ .+++++++..
T Consensus 112 l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~ 184 (427)
T 3i16_A 112 LRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQR 184 (427)
T ss_dssp CCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEEC
T ss_pred hCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEc
Confidence 47899988776 4444333332 1234568877766642 678888888875 5677877655
No 156
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=26.55 E-value=1.4e+02 Score=19.53 Aligned_cols=49 Identities=16% Similarity=0.159 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCC
Q 048729 235 SAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRY 297 (330)
Q Consensus 235 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 297 (330)
..++++.+.++|+|.+|..+.-..+ ..+-+.. .+.+++.+.+.+++...
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~D-----~ll~v~~---------~d~~~l~~~l~~~l~~~ 63 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSVTGPYD-----LVALVRL---------KDVEELDDVVTQGILSL 63 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEESSSSS-----EEEEEEE---------SSGGGHHHHCCCCCTTS
T ss_pred HHHHHHHHhcCCCeEEEEEeecCCC-----EEEEEEE---------CCHHHHHHHHHHhcccC
Confidence 5789999999999999999854332 3333332 33467777776666544
No 157
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=26.43 E-value=1.6e+02 Score=25.29 Aligned_cols=58 Identities=19% Similarity=0.258 Sum_probs=35.3
Q ss_pred HHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecC--C---CCCHHHHHHHHHhcCCcEEEE
Q 048729 57 LSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNIN--T---RLDAHTLSVLLQHSESKLVFV 118 (330)
Q Consensus 57 L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~--~---~~~~~~l~~~l~~~~~~~i~~ 118 (330)
+..+++++||.|++..+..+.+.. ++...|+.++.++ + ....+.+...++. ++++++.
T Consensus 95 l~~~~~~~gd~vl~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~ 157 (399)
T 2oga_A 95 LRGLGIGPGDEVIVPSHTYIASWL---AVSATGATPVPVEPHEDHPTLDPLLVEKAITP-RTRALLP 157 (399)
T ss_dssp HHHTTCCTTCEEEEESSSCTHHHH---HHHHTTCEEEEECBCSSSSSBCHHHHHHHCCT-TEEEECC
T ss_pred HHHhCCCCcCEEEECCCccHHHHH---HHHHCCCEEEEEecCCCCCCcCHHHHHHhcCC-CCeEEEE
Confidence 334456788998888887666433 3345677655443 2 3457777777754 4555553
No 158
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=25.76 E-value=1.2e+02 Score=18.43 Aligned_cols=54 Identities=28% Similarity=0.300 Sum_probs=34.7
Q ss_pred EeCCeec--CHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHh
Q 048729 227 ISGGENI--CSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRA 292 (330)
Q Consensus 227 k~~G~~v--~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~ 292 (330)
++.|... ....||+.|.+.++|..+.+-.... . +.|...+.. .+.+++.+.+.+
T Consensus 7 ~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~-----~--~~v~~~~~~-----~~~~~i~~~i~~ 62 (74)
T 3dxs_X 7 GVTGMTCAACSNSVEAALMNVNGVFKASVALLQN-----R--ADVVFDPNL-----VKEEDIKEEIED 62 (74)
T ss_dssp EEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGT-----E--EEEEECTTT-----CCHHHHHHHHHH
T ss_pred EECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCC-----E--EEEEECCCC-----CCHHHHHHHHHH
Confidence 3444333 4578999999999999888754433 1 333333332 467888888876
No 159
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=25.57 E-value=1.3e+02 Score=18.97 Aligned_cols=49 Identities=18% Similarity=0.149 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCC
Q 048729 235 SAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRY 297 (330)
Q Consensus 235 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 297 (330)
..++++.+.++|.|.+|..+.-+.+ ..+-+.. .+.+++.+.+.+++...
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~d-----~l~~v~~---------~d~~~l~~~~~~~l~~~ 63 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVYGVYD-----IVVKVEA---------DSMDKLKDFVTNTIRKL 63 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECSSSCS-----EEEEEEC---------SSHHHHHHHHHHTGGGS
T ss_pred HHHHHHHHhCCCCeEEEEEEeccCC-----EEEEEEE---------CCHHHHHHHHHHHhcCC
Confidence 3789999999999999998754332 2232222 34577777777666443
No 160
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A
Probab=25.55 E-value=3e+02 Score=23.07 Aligned_cols=58 Identities=17% Similarity=0.235 Sum_probs=39.2
Q ss_pred HHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEE
Q 048729 56 SLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVF 117 (330)
Q Consensus 56 ~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~ 117 (330)
.|...++++|++|++...-.....++.++- ..|+.++.+.. +++.+. .+++.+++.++
T Consensus 156 ~l~~~~~~~g~~VlV~GaG~vG~~~~~~a~-~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~~~ 213 (339)
T 1rjw_A 156 ALKVTGAKPGEWVAIYGIGGLGHVAVQYAK-AMGLNVVAVDI--GDEKLE-LAKELGADLVV 213 (339)
T ss_dssp HHHHHTCCTTCEEEEECCSTTHHHHHHHHH-HTTCEEEEECS--CHHHHH-HHHHTTCSEEE
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCEEEEEeC--CHHHHH-HHHHCCCCEEe
Confidence 344558999999999998556666665554 56887766654 344443 45667777655
No 161
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=25.50 E-value=1.1e+02 Score=22.23 Aligned_cols=11 Identities=27% Similarity=0.072 Sum_probs=8.0
Q ss_pred cCCCcEEEeCC
Q 048729 28 YTDCPSLVYNN 38 (330)
Q Consensus 28 ~p~~~a~~~~~ 38 (330)
+|.+++++-.+
T Consensus 12 ~p~~IavIGas 22 (145)
T 2duw_A 12 STRTIALVGAS 22 (145)
T ss_dssp HCCCEEEESCC
T ss_pred CCCEEEEECcC
Confidence 48888888654
No 162
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=25.39 E-value=1.4e+02 Score=25.23 Aligned_cols=54 Identities=20% Similarity=0.359 Sum_probs=35.3
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCC----C--CCHHHHHHHHHhcCCcEEEEc
Q 048729 62 IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINT----R--LDAHTLSVLLQHSESKLVFVD 119 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~----~--~~~~~l~~~l~~~~~~~i~~~ 119 (330)
+++||.|++..|....+... +...|+.++.++. . .+.+.+...++. ++++++..
T Consensus 102 ~~~gd~Vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~ 161 (375)
T 3op7_A 102 IEPGDHVISLYPTYQQLYDI---PKSLGAEVDLWQIEEENGWLPDLEKLRQLIRP-TTKMICIN 161 (375)
T ss_dssp CCTTCEEEEEESSCTHHHHH---HHHTTCEEEEEEEEGGGTTEECHHHHHHHCCT-TCCEEEEE
T ss_pred cCCCCEEEEeCCCchhHHHH---HHHcCCEEEEEeccccCCCCCCHHHHHHhhcc-CCeEEEEc
Confidence 47899999888887665433 3456776555442 1 467888887764 56666554
No 163
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=25.34 E-value=2.8e+02 Score=24.58 Aligned_cols=63 Identities=24% Similarity=0.156 Sum_probs=37.6
Q ss_pred HHcC-CCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcc
Q 048729 58 SSVG-IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDH 120 (330)
Q Consensus 58 ~~~g-~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~ 120 (330)
.+.| +++|....+....+=.-...-+++...|..++.+-|...+..-...++.++++++++++
T Consensus 166 ~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 166 EQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 3456 46775444444444333334456677788555443333444556688999999999975
No 164
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=25.34 E-value=2.1e+02 Score=24.76 Aligned_cols=55 Identities=15% Similarity=0.105 Sum_probs=29.1
Q ss_pred CCCCCEEEEECCCCHHHHHHHH-HhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729 62 IQRGHVVSVVAPNVPSMYELQF-GVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV 118 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~l-a~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~ 118 (330)
+++||.|.+..|....+...+- .+...|+.++.++.. ..+.+...++. ++++++.
T Consensus 98 ~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~~i~~-~t~~v~l 153 (404)
T 1e5e_A 98 LKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA-IPGEVKKHMKP-NTKIVYF 153 (404)
T ss_dssp CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-STTHHHHHCCT-TEEEEEE
T ss_pred hCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-CHHHHHHhcCC-CCcEEEE
Confidence 3567777777666665544322 244556666555543 34455555543 3444443
No 165
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A
Probab=25.30 E-value=2.2e+02 Score=25.14 Aligned_cols=75 Identities=20% Similarity=0.288 Sum_probs=46.5
Q ss_pred eecHHHHHHHHHHHHHH---HH---HcCCCCCCEEEEECCCC-HHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcC
Q 048729 40 TYTWSETHRRCLQVASS---LS---SVGIQRGHVVSVVAPNV-PSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSE 112 (330)
Q Consensus 40 ~~T~~el~~~~~~~a~~---L~---~~g~~~gd~V~~~~~~~-~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~ 112 (330)
.+++.+........... |. ..++++|++|++....+ +...+..+|- ..|+.++.+.. +.+.+. .+++.+
T Consensus 190 ~ls~~~aA~l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~a~qla~-~~Ga~vi~~~~--~~~~~~-~~~~lG 265 (447)
T 4a0s_A 190 HLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVK-NGGGIPVAVVS--SAQKEA-AVRALG 265 (447)
T ss_dssp TSCHHHHHTSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEES--SHHHHH-HHHHTT
T ss_pred CCCHHHHHHhHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHHHHHHHHHH-HcCCEEEEEeC--CHHHHH-HHHhcC
Confidence 47777765332222222 21 26899999999999855 5666554544 67887766653 445444 557778
Q ss_pred CcEEEE
Q 048729 113 SKLVFV 118 (330)
Q Consensus 113 ~~~i~~ 118 (330)
++.++.
T Consensus 266 a~~~i~ 271 (447)
T 4a0s_A 266 CDLVIN 271 (447)
T ss_dssp CCCEEE
T ss_pred CCEEEe
Confidence 876654
No 166
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=25.16 E-value=27 Score=30.14 Aligned_cols=32 Identities=13% Similarity=0.241 Sum_probs=21.5
Q ss_pred eecEEEEecCcccccccCCchhhhccccCCCeEE
Q 048729 170 SLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFY 203 (330)
Q Consensus 170 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~ 203 (330)
+.||++++|+....||+...+... ++++|++.
T Consensus 214 ~~Gel~~~g~~~~~g~~~TGDlg~--~d~~g~~~ 245 (358)
T 4gs5_A 214 ERGCLHISGAVTNGQTVQTNDLVE--IHGNAFQW 245 (358)
T ss_dssp TTSEEEEESGGGTTCCEEEEEEEE--ECSSEEEE
T ss_pred CcCceEEecccccCcceecCCccc--cccCceEE
Confidence 449999999988888875554332 23466554
No 167
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=25.09 E-value=2.9e+02 Score=22.82 Aligned_cols=60 Identities=12% Similarity=0.203 Sum_probs=37.7
Q ss_pred HcC-CCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeec-CCCCCHHHHHHHHHhcCCcEEEEcc
Q 048729 59 SVG-IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNI-NTRLDAHTLSVLLQHSESKLVFVDH 120 (330)
Q Consensus 59 ~~g-~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l-~~~~~~~~l~~~l~~~~~~~i~~~~ 120 (330)
+.| +++|+.|.....-+....++ +++...|..++.+ +...+ ..-...++.++++++++..
T Consensus 54 ~~g~~~~g~~vv~~ssGN~g~a~A-~~a~~~G~~~~iv~p~~~~-~~k~~~~~~~Ga~v~~~~~ 115 (303)
T 2v03_A 54 KRGEIKPGDVLIEATSGNTGIALA-MIAALKGYRMKLLMPDNMS-QERRAAMRAYGAELILVTK 115 (303)
T ss_dssp HTTCCCTTCEEEEECSSHHHHHHH-HHHHHHTCEEEEEEETTSC-HHHHHHHHHTTCEEEEECT
T ss_pred HcCCCCCCCEEEEECCcHHHHHHH-HHHHHcCCcEEEEECCCCC-HHHHHHHHHcCCEEEEECC
Confidence 345 46777666665433444444 4555788855544 44444 4455688999999999875
No 168
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=25.06 E-value=2.5e+02 Score=23.86 Aligned_cols=58 Identities=7% Similarity=0.108 Sum_probs=35.8
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHhhhcCcEEee-cCCCCCHHHHHHHHHhcCCcEEEEccc
Q 048729 62 IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNN-INTRLDAHTLSVLLQHSESKLVFVDHL 121 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~-l~~~~~~~~l~~~l~~~~~~~i~~~~~ 121 (330)
+++|+.|.....-+....++ +++...|..++. ++...+. .-...++..+++++++...
T Consensus 75 ~~~g~~vv~aSsGN~g~alA-~aa~~~G~~~~iv~p~~~~~-~k~~~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 75 LKPGMEIIESTSGNTGIALC-QAGAVFGYRVNIAMPSTMSV-ERQMIMKAFGAELILTEGK 133 (343)
T ss_dssp SCTTCEEEEECSSHHHHHHH-HHHHHHTCCEEEEEETTSCH-HHHHHHHHTTCEEEEECGG
T ss_pred CCCCCEEEEECCcHHHHHHH-HHHHHcCCCEEEEECCCCCH-HHHHHHHHCCCEEEEECCC
Confidence 46777666665533444433 444567774443 4444554 4556889999999998763
No 169
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=25.03 E-value=3e+02 Score=23.00 Aligned_cols=56 Identities=16% Similarity=0.040 Sum_probs=33.5
Q ss_pred CCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCC-----CCCHHHHHHHHHhcCCcEEEEc
Q 048729 63 QRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINT-----RLDAHTLSVLLQHSESKLVFVD 119 (330)
Q Consensus 63 ~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~-----~~~~~~l~~~l~~~~~~~i~~~ 119 (330)
++||.|++..+..+.... .-++...|+.++.++. ..+.+.+...++..++++++..
T Consensus 84 ~~gd~vlv~~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~ 144 (385)
T 2bkw_A 84 APNKNVLVVSTGTFSDRF-ADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVT 144 (385)
T ss_dssp CSCCEEEEECSSHHHHHH-HHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEE
T ss_pred CCCCeEEEEcCCcchHHH-HHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEE
Confidence 688988777444433221 1234456776655543 2567888888876566776654
No 170
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=24.99 E-value=55 Score=27.22 Aligned_cols=61 Identities=11% Similarity=0.094 Sum_probs=39.2
Q ss_pred EEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHH---HHHHHHHhcCCcEEEEcccchHHHH
Q 048729 67 VVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAH---TLSVLLQHSESKLVFVDHLHTYLLL 127 (330)
Q Consensus 67 ~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~---~l~~~l~~~~~~~i~~~~~~~~~~~ 127 (330)
+..+.....+.|+.-.+++-..|..-+--....++. .+...+++.++++||+.+.+-....
T Consensus 178 ~~~v~~H~af~Yf~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~ 241 (284)
T 3cx3_A 178 KTFVTQHTAFSYLAKRFGLNQLGIAGISPEQEPSPRQLTEIQEFVKTYKVKTIFTESNASSKVA 241 (284)
T ss_dssp CCEEEEESCCHHHHHHTTCCEEEEECSSTTCCCCSHHHHHHHHHHHHTTCCCEEECSSSCCHHH
T ss_pred CEEEEECCchHHHHHHcCCEEeeccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCcHHH
Confidence 334555667899998888876553321112234444 5666678889999999987765444
No 171
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=24.93 E-value=3e+02 Score=22.97 Aligned_cols=56 Identities=13% Similarity=0.202 Sum_probs=34.6
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHhhhcCcEEe--ecCCCCCHHHHHHHHHhcCCcEEEEcc
Q 048729 62 IQRGHVVSVVAPNVPSMYELQFGVPMSGAILN--NINTRLDAHTLSVLLQHSESKLVFVDH 120 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~--~l~~~~~~~~l~~~l~~~~~~~i~~~~ 120 (330)
.++||.|++..|....+... +...|+.++ +++.....+.+...++....-++++.+
T Consensus 102 ~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p 159 (377)
T 3fdb_A 102 TPAQSKVIVPTPAYPPFFHL---LSATQREGIFIDATGGINLHDVEKGFQAGARSILLCNP 159 (377)
T ss_dssp SCTTCCEEEEESCCTHHHHH---HHHHTCCEEEEECTTSCCHHHHHHHHHTTCCEEEEESS
T ss_pred cCCCCEEEEcCCCcHhHHHH---HHHcCCEEEEccCCCCCCHHHHHHHhccCCCEEEEeCC
Confidence 36889998888877665433 334565444 444446788888888764333444444
No 172
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=24.67 E-value=2.6e+02 Score=23.59 Aligned_cols=52 Identities=21% Similarity=0.234 Sum_probs=29.9
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCC------CCCHHHHHHHHHhcCCcEEE
Q 048729 62 IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINT------RLDAHTLSVLLQHSESKLVF 117 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~------~~~~~~l~~~l~~~~~~~i~ 117 (330)
+++||.|++..|..+.+.. ++...|+.++.++. ....+.+...++. ++++++
T Consensus 111 ~~~gd~vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~ 168 (388)
T 1j32_A 111 IEPGDEVIIPAPFWVSYPE---MVKLAEGTPVILPTTVETQFKVSPEQIRQAITP-KTKLLV 168 (388)
T ss_dssp CCTTCEEEEESSCCTHHHH---HHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCT-TEEEEE
T ss_pred cCCCCEEEEcCCCChhHHH---HHHHcCCEEEEecCCcccCCCCCHHHHHHhcCc-CceEEE
Confidence 4678888887776665433 23345665554442 2456677766653 455544
No 173
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=24.66 E-value=3e+02 Score=22.82 Aligned_cols=63 Identities=10% Similarity=0.072 Sum_probs=37.8
Q ss_pred HHHcC-CCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeec-CCCCCHHHHHHHHHhcCCcEEEEccc
Q 048729 57 LSSVG-IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNI-NTRLDAHTLSVLLQHSESKLVFVDHL 121 (330)
Q Consensus 57 L~~~g-~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l-~~~~~~~~l~~~l~~~~~~~i~~~~~ 121 (330)
+.+.| +++|+.|.....-+....++ +++...|..++.+ +...+. .-...++.++++++++...
T Consensus 58 a~~~g~~~~g~~vv~assGN~g~alA-~~a~~~G~~~~iv~p~~~~~-~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 58 AEQAGLIKPDTIILEPTSGNTGIALA-MVCAARGYRCVLTMPETMSL-ERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp HHHTTCCCTTCEEEEECSSHHHHHHH-HHHHHHTCEEEEEEETTSCH-HHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEEeCCCHHHHHHH-HHHHHcCCcEEEEECCCCCH-HHHHHHHHCCCEEEEeCCC
Confidence 33445 36777665533333444444 4555788855544 444444 4556788999999998763
No 174
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=24.52 E-value=1.6e+02 Score=24.51 Aligned_cols=81 Identities=9% Similarity=0.007 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHH-c-CCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHHH---HHHHHHhcCCcEEEE
Q 048729 44 SETHRRCLQVASSLSS-V-GIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHT---LSVLLQHSESKLVFV 118 (330)
Q Consensus 44 ~el~~~~~~~a~~L~~-~-g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~---l~~~l~~~~~~~i~~ 118 (330)
..+....+.+-..+++ + .+ ++ +..+.....+.|+.-.+++-..|..- .....++.+ +...+++.++++||+
T Consensus 168 ~~~~~~L~~Ld~~~~~~l~~~-~~-~~~v~~H~af~Yf~~~yGl~~~~~~~--~~~eps~~~l~~l~~~ik~~~v~~If~ 243 (291)
T 1pq4_A 168 AAFLAELERLNQELGQILQPL-PQ-RKFIVFHPSWAYFARDYNLVQIPIEV--EGQEPSAQELKQLIDTAKENNLTMVFG 243 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-SC-CEEEESSCCCHHHHHHTTCEEEESCB--TTBCCCHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCC-CC-CEEEEECCchHHHHHHCCCEEeeccc--CCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3444444444444441 1 33 34 44566677899999888887655432 234455654 555567889999999
Q ss_pred cccchHHHHH
Q 048729 119 DHLHTYLLLE 128 (330)
Q Consensus 119 ~~~~~~~~~~ 128 (330)
.+.+-.....
T Consensus 244 e~~~~~~~~~ 253 (291)
T 1pq4_A 244 ETQFSTKSSE 253 (291)
T ss_dssp ETTSCCHHHH
T ss_pred eCCCChHHHH
Confidence 8877665543
No 175
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=24.43 E-value=1.1e+02 Score=26.13 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=28.0
Q ss_pred CCCCCEEEEECCCCHHHHHHHH-HhhhcCcEEeecCC--C--CCHHHHHHHHHhcCCcEEEE
Q 048729 62 IQRGHVVSVVAPNVPSMYELQF-GVPMSGAILNNINT--R--LDAHTLSVLLQHSESKLVFV 118 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~l-a~~~~G~~~~~l~~--~--~~~~~l~~~l~~~~~~~i~~ 118 (330)
+++||.|++..+.++.....+. .+...|+.++.++. . ...+.+...++. ++++++.
T Consensus 110 ~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~ 170 (406)
T 1kmj_A 110 VRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDE-KTRLLAI 170 (406)
T ss_dssp CCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCT-TEEEEEE
T ss_pred CCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhcc-CCeEEEE
Confidence 4677777777776654432222 22334655444432 1 345566655543 4455544
No 176
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Probab=24.39 E-value=3.1e+02 Score=22.85 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=38.7
Q ss_pred cCCCCCCEEEEECCCC-HHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEc
Q 048729 60 VGIQRGHVVSVVAPNV-PSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVD 119 (330)
Q Consensus 60 ~g~~~gd~V~~~~~~~-~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~ 119 (330)
.++++|++|++....+ .......++- ..|+.++.+.. +++++. .+++.+.+.++..
T Consensus 144 ~~~~~g~~vlV~Ga~g~iG~~~~~~a~-~~Ga~Vi~~~~--~~~~~~-~~~~~ga~~~~~~ 200 (334)
T 3qwb_A 144 YHVKKGDYVLLFAAAGGVGLILNQLLK-MKGAHTIAVAS--TDEKLK-IAKEYGAEYLINA 200 (334)
T ss_dssp SCCCTTCEEEESSTTBHHHHHHHHHHH-HTTCEEEEEES--SHHHHH-HHHHTTCSEEEET
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeC--CHHHHH-HHHHcCCcEEEeC
Confidence 4899999999999555 6666655554 67887776654 345544 6677888777653
No 177
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=24.27 E-value=3e+02 Score=22.74 Aligned_cols=54 Identities=9% Similarity=0.113 Sum_probs=36.9
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCC----CCCHHHHHHHHHh-cCCcEEEE
Q 048729 62 IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINT----RLDAHTLSVLLQH-SESKLVFV 118 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~----~~~~~~l~~~l~~-~~~~~i~~ 118 (330)
.++||.|++..|....+.. ++...|+.++.++. ....+.+...+++ .++++++.
T Consensus 89 ~~~gd~vl~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l 147 (354)
T 3ly1_A 89 ASLEAQLVIPELTYGDGEH---FAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYL 147 (354)
T ss_dssp CCTTCEEEEESSSCTHHHH---HHHHTTCEEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEE
T ss_pred hCCCCeEEECCCCchHHHH---HHHHcCCEEEEecCCCCCCCCHHHHHHHhccCCCCCEEEE
Confidence 3688999988887766543 34456776665542 3467888888876 56777765
No 178
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=24.26 E-value=1.8e+02 Score=25.13 Aligned_cols=55 Identities=13% Similarity=0.170 Sum_probs=35.2
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCC-------CCCHHHHHHHHHhcCCcEEEEc
Q 048729 62 IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINT-------RLDAHTLSVLLQHSESKLVFVD 119 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~-------~~~~~~l~~~l~~~~~~~i~~~ 119 (330)
.++||.|++..|....+.. ++...|+.++.++. ....+.+...+++.++++++..
T Consensus 140 ~~~gd~Vi~~~~~y~~~~~---~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~ 201 (421)
T 3l8a_A 140 SEKGDAVLINSPVYYPFAR---TIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLC 201 (421)
T ss_dssp SCTEEEEEEEESCCHHHHH---HHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEE
T ss_pred cCCCCEEEECCCCcHHHHH---HHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEEC
Confidence 3578888888777766543 33455765554442 1578888888876666766543
No 179
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=24.17 E-value=3.1e+02 Score=22.82 Aligned_cols=58 Identities=12% Similarity=0.038 Sum_probs=40.4
Q ss_pred HHcCCCCCCEEEEECCCC-HHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729 58 SSVGIQRGHVVSVVAPNV-PSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV 118 (330)
Q Consensus 58 ~~~g~~~gd~V~~~~~~~-~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~ 118 (330)
...++++|++|++....+ ....+..++ ...|+.++.+.. +++.+..+.++.+++.++.
T Consensus 143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~--~~~~~~~~~~~~g~~~~~~ 201 (336)
T 4b7c_A 143 DVGQPKNGETVVISGAAGAVGSVAGQIA-RLKGCRVVGIAG--GAEKCRFLVEELGFDGAID 201 (336)
T ss_dssp HTTCCCTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEES--SHHHHHHHHHTTCCSEEEE
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeC--CHHHHHHHHHHcCCCEEEE
Confidence 456899999999999855 566555444 467987766553 4556655557888877664
No 180
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=24.10 E-value=1.4e+02 Score=21.58 Aligned_cols=49 Identities=10% Similarity=0.100 Sum_probs=23.6
Q ss_pred CEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcE
Q 048729 66 HVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKL 115 (330)
Q Consensus 66 d~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ 115 (330)
|.+.++.|. ......+..|...|...+.+.+....+++....++.+..+
T Consensus 71 Dlvii~vp~-~~v~~v~~~~~~~g~~~i~~~~~~~~~~l~~~a~~~Gi~~ 119 (138)
T 1y81_A 71 DVIVFVVPP-KVGLQVAKEAVEAGFKKLWFQPGAESEEIRRFLEKAGVEY 119 (138)
T ss_dssp CEEEECSCH-HHHHHHHHHHHHTTCCEEEECTTSCCHHHHHHHHHHTCEE
T ss_pred CEEEEEeCH-HHHHHHHHHHHHcCCCEEEEcCccHHHHHHHHHHHCCCEE
Confidence 566666662 2233333344444443333443333456666666666553
No 181
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=23.89 E-value=59 Score=27.16 Aligned_cols=52 Identities=19% Similarity=0.183 Sum_probs=33.4
Q ss_pred CCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--------HHH-HHHHHHhh-hcCcEEeec
Q 048729 37 NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNV--------PSM-YELQFGVP-MSGAILNNI 95 (330)
Q Consensus 37 ~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~--------~~~-~~~~la~~-~~G~~~~~l 95 (330)
.++.+|-.+| .+.|+++|+++||.|++-++.+ ++. +-+++-.+ .-|.+++|-
T Consensus 18 ~~~~~T~~~L-------~~~L~~LGI~~Gd~llVHsSL~~lG~v~Gga~~vi~AL~~~vg~~GTLvmPt 79 (286)
T 3sma_A 18 DRELVTRDRL-------ASDLAALGVRPGGVLLVHASLSALGWVCGGAQAVVLALQDAVGKEGTLVMPT 79 (286)
T ss_dssp -CCEECHHHH-------HHHHHHHTCCTTCEEEEEECSTTSCEETTHHHHHHHHHHHHHCTTCEEEEEC
T ss_pred cCCCcCHHHH-------HHHHHHcCCCCCCEEEEEechHHhCCCCCCHHHHHHHHHHHhcCCCEEEEec
Confidence 3456776665 5667788999999999988854 222 22333333 247777776
No 182
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=23.64 E-value=3.1e+02 Score=23.66 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=26.2
Q ss_pred CCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCC---CCCHHHHHHHHH
Q 048729 63 QRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINT---RLDAHTLSVLLQ 109 (330)
Q Consensus 63 ~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~---~~~~~~l~~~l~ 109 (330)
++||.|++..|..+.+... +...|+.++.++. .+..+.+...++
T Consensus 130 ~~gd~Vlv~~p~y~~~~~~---~~~~g~~~~~v~~~~~~~d~~~l~~~l~ 176 (425)
T 2r2n_A 130 NPGDNVLLDEPAYSGTLQS---LHPLGCNIINVASDESGIVPDSLRDILS 176 (425)
T ss_dssp CTTCEEEEESSCCHHHHHH---HGGGTCEEEEECEETTEECHHHHHHHHT
T ss_pred CCCCEEEEeCCCcHHHHHH---HHHcCCEEEEeCcCCCCCCHHHHHHHHH
Confidence 5677777777766554332 3455666555542 245667777776
No 183
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}
Probab=23.62 E-value=2.7e+02 Score=23.51 Aligned_cols=75 Identities=12% Similarity=0.030 Sum_probs=46.5
Q ss_pred eecHHHHHHHHHHHHHH---H-HHcCCCCCCEEEEECCCC-HHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCc
Q 048729 40 TYTWSETHRRCLQVASS---L-SSVGIQRGHVVSVVAPNV-PSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESK 114 (330)
Q Consensus 40 ~~T~~el~~~~~~~a~~---L-~~~g~~~gd~V~~~~~~~-~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~ 114 (330)
.+++.+.......++.. | ...++++|++|++....+ ....+..++ ...|+.++.+.. +++.+ ..+++.+++
T Consensus 139 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a-~~~Ga~Vi~~~~--~~~~~-~~~~~lGa~ 214 (353)
T 4dup_A 139 GYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLA-RAFGAEVYATAG--STGKC-EACERLGAK 214 (353)
T ss_dssp TCCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEES--SHHHH-HHHHHHTCS
T ss_pred CCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHH-HHcCCEEEEEeC--CHHHH-HHHHhcCCC
Confidence 37787765333333322 3 246899999999996555 666655555 467987766653 34444 355667777
Q ss_pred EEEE
Q 048729 115 LVFV 118 (330)
Q Consensus 115 ~i~~ 118 (330)
.++.
T Consensus 215 ~~~~ 218 (353)
T 4dup_A 215 RGIN 218 (353)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6664
No 184
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=23.31 E-value=94 Score=23.64 Aligned_cols=39 Identities=8% Similarity=-0.012 Sum_probs=28.3
Q ss_pred HcCCCCCCEEEEECCCCH--HHHHHHHHhhhcCcEEeecCC
Q 048729 59 SVGIQRGHVVSVVAPNVP--SMYELQFGVPMSGAILNNINT 97 (330)
Q Consensus 59 ~~g~~~gd~V~~~~~~~~--~~~~~~la~~~~G~~~~~l~~ 97 (330)
...++++|+|.++++.+. ..+-+...+-.-|+.++.+..
T Consensus 72 ~~~i~~~D~vii~S~Sg~n~~~ie~A~~ake~G~~vIaITs 112 (170)
T 3jx9_A 72 HKTLHAVDRVLIFTPDTERSDLLASLARYDAWHTPYSIITL 112 (170)
T ss_dssp TCCCCTTCEEEEEESCSCCHHHHHHHHHHHHHTCCEEEEES
T ss_pred cCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 347899999999998774 445555666677887777765
No 185
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=23.30 E-value=2.6e+02 Score=21.60 Aligned_cols=85 Identities=7% Similarity=0.040 Sum_probs=41.1
Q ss_pred eeecHHHHHHHHHHHHHHHHH----cC---CCCCCEEEEECCC-C-HHH--HHHHHHhhhcCcEEeecCCCCCHHHHHHH
Q 048729 39 TTYTWSETHRRCLQVASSLSS----VG---IQRGHVVSVVAPN-V-PSM--YELQFGVPMSGAILNNINTRLDAHTLSVL 107 (330)
Q Consensus 39 ~~~T~~el~~~~~~~a~~L~~----~g---~~~gd~V~~~~~~-~-~~~--~~~~la~~~~G~~~~~l~~~~~~~~l~~~ 107 (330)
.+++..|++..+..+...+.. .. -..+-+|.+..+. . ++. .+.-..+-..|.-++-+....+.+.+...
T Consensus 55 g~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~ 134 (210)
T 1y80_A 55 NEMFVPEVLMSANAMNAGVEVVKQSQQAFDMPSVGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEA 134 (210)
T ss_dssp ------------------------------CCCCCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHH
T ss_pred CceeHHHHHHHHHHHHHHHHHHHHHhccccCCCCCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 456667766555444444331 11 1122244444433 2 333 33334444779999889999999999999
Q ss_pred HHhcCCcEEEEcccch
Q 048729 108 LQHSESKLVFVDHLHT 123 (330)
Q Consensus 108 l~~~~~~~i~~~~~~~ 123 (330)
+++.+|+++..+....
T Consensus 135 ~~~~~~d~v~lS~~~~ 150 (210)
T 1y80_A 135 VKKYQPDIVGMSALLT 150 (210)
T ss_dssp HHHHCCSEEEEECCSG
T ss_pred HHHcCCCEEEEecccc
Confidence 9999999998765433
No 186
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=23.19 E-value=2.2e+02 Score=24.09 Aligned_cols=74 Identities=14% Similarity=0.162 Sum_probs=45.0
Q ss_pred eecHHHHHHHHHHHH---HHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEE
Q 048729 40 TYTWSETHRRCLQVA---SSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLV 116 (330)
Q Consensus 40 ~~T~~el~~~~~~~a---~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i 116 (330)
.+++.+.... ..++ +.+...++++|++|++...-.....++.+|- ..|+.++.+.. +++.+ .++++.+++.+
T Consensus 142 ~~~~~~aa~~-~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~~ 216 (352)
T 1e3j_A 142 NVSLEEGALL-EPLSVGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAK-AYGAFVVCTAR--SPRRL-EVAKNCGADVT 216 (352)
T ss_dssp TSCHHHHHTH-HHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEES--CHHHH-HHHHHTTCSEE
T ss_pred CCCHHHHHhh-chHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCEEEEEcC--CHHHH-HHHHHhCCCEE
Confidence 3677665422 2222 2334568999999999987446666665554 56887555543 34443 45667888766
Q ss_pred EE
Q 048729 117 FV 118 (330)
Q Consensus 117 ~~ 118 (330)
+.
T Consensus 217 ~~ 218 (352)
T 1e3j_A 217 LV 218 (352)
T ss_dssp EE
T ss_pred Ec
Confidence 54
No 187
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=22.84 E-value=3.4e+02 Score=22.98 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=33.6
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCC----------CCCHHHHHHHHHhcCCcEEEE
Q 048729 62 IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINT----------RLDAHTLSVLLQHSESKLVFV 118 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~----------~~~~~~l~~~l~~~~~~~i~~ 118 (330)
+++||.|++..|....+. .++...|+.++.++. ....+.+...++. ++++++.
T Consensus 123 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~ 185 (407)
T 3nra_A 123 VARGDKVAIVQPDYFANR---KLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA-GARVFLF 185 (407)
T ss_dssp CCTTCEEEEEESCCTHHH---HHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT-TCCEEEE
T ss_pred CCCCCEEEEcCCcccchH---HHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhh-CCcEEEE
Confidence 468888888887776543 334456765554432 2467888888876 5665543
No 188
>4dcz_A DNAJ-like protein Mg200; dimer, intra-domain symmetry AXIS, unknown function; 2.90A {Mycoplasma genitalium}
Probab=22.76 E-value=26 Score=22.73 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=14.2
Q ss_pred eEEEecCceEEEEecCCCeEEeCCeecCHHHH
Q 048729 207 IGVMHADGYVEIKDRSKDVIISGGENICSAEV 238 (330)
Q Consensus 207 ~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~i 238 (330)
+|++|++|.+.+.|=-|+ +|.+|...++
T Consensus 55 YGyYDe~GEWVW~GYFDE----~g~WV~~~~~ 82 (92)
T 4dcz_A 55 YGYFDETGDWSWKGYFDE----QGKWVWNEPV 82 (92)
T ss_dssp TEEECTTSCEEESEEECT----TSBEEECC--
T ss_pred cccccCCCCEEEEeEecC----CCCEeecccc
Confidence 566666666666654442 3444444333
No 189
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=22.61 E-value=1.8e+02 Score=24.74 Aligned_cols=78 Identities=13% Similarity=0.081 Sum_probs=46.4
Q ss_pred eeecHHHHHHHHHH---HHHHHHHcCCC-CCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCc
Q 048729 39 TTYTWSETHRRCLQ---VASSLSSVGIQ-RGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESK 114 (330)
Q Consensus 39 ~~~T~~el~~~~~~---~a~~L~~~g~~-~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~ 114 (330)
..+++.+....... .-+.|...+++ +||+|++...-......+.+|- ..|+.++.+..+ ++.+....++.+++
T Consensus 151 ~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak-~~Ga~Vi~~~~~--~~~~~~~~~~lGa~ 227 (357)
T 2cf5_A 151 EGMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAK-AMGHHVTVISSS--NKKREEALQDLGAD 227 (357)
T ss_dssp SSCCHHHHTGGGTHHHHHHHHHHHTSTTSTTCEEEEECCSHHHHHHHHHHH-HHTCEEEEEESS--TTHHHHHHTTSCCS
T ss_pred CCCCHHHhhhhhhhHHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeCC--hHHHHHHHHHcCCc
Confidence 34677664321111 12334567888 9999999986446666665655 468876655543 23444444477887
Q ss_pred EEEEc
Q 048729 115 LVFVD 119 (330)
Q Consensus 115 ~i~~~ 119 (330)
.++..
T Consensus 228 ~vi~~ 232 (357)
T 2cf5_A 228 DYVIG 232 (357)
T ss_dssp CEEET
T ss_pred eeecc
Confidence 66653
No 190
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=22.59 E-value=2.8e+02 Score=23.56 Aligned_cols=52 Identities=19% Similarity=0.123 Sum_probs=29.8
Q ss_pred CCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhc-----CCcEEEE
Q 048729 63 QRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHS-----ESKLVFV 118 (330)
Q Consensus 63 ~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~-----~~~~i~~ 118 (330)
++||.|++..+.+..+. -++...|+.++.++ ....+.+...++.. ++++++.
T Consensus 127 ~~gd~v~~~~~~~~~~~---~~~~~~g~~~~~~~-~~d~~~l~~~l~~~~~~~~~~~~v~~ 183 (401)
T 1fc4_A 127 GAEDAIISDALNHASII---DGVRLCKAKRYRYA-NNDMQELEARLKEAREAGARHVLIAT 183 (401)
T ss_dssp CTTCEEEEETTCCHHHH---HHHHTSCSEEEEEC-TTCHHHHHHHHHHHHHTTCSSEEEEE
T ss_pred CCCCEEEEcchhHHHHH---HHHHHcCCceEEEC-CCCHHHHHHHHHHhhccCCCceEEEE
Confidence 56777766666554332 23445677666665 34566666666643 4555554
No 191
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=22.52 E-value=2.9e+02 Score=23.55 Aligned_cols=55 Identities=13% Similarity=0.235 Sum_probs=31.0
Q ss_pred CCCCCEEEEECCCCHHHHHHHHH-hhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729 62 IQRGHVVSVVAPNVPSMYELQFG-VPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV 118 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~la-~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~ 118 (330)
+++||.|.+..+....+...+.. +...|+.++.++.. ..+.+...++. ++++++.
T Consensus 100 ~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~~i~~-~~~~v~~ 155 (398)
T 2rfv_A 100 CQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAA-KPEEIRAAMRP-ETKVVYI 155 (398)
T ss_dssp CCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT-SHHHHHHHCCT-TEEEEEE
T ss_pred hCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHhcCC-CCeEEEE
Confidence 35778887777766655443311 23557666655543 55666666543 4455544
No 192
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=22.49 E-value=2.7e+02 Score=24.17 Aligned_cols=56 Identities=9% Similarity=0.068 Sum_probs=34.9
Q ss_pred CCCCCEEEEECCCCHHHHHHHHH-hhhcCcEEeec-CCCCCHHHHHHHHHhcCCcEEEEc
Q 048729 62 IQRGHVVSVVAPNVPSMYELQFG-VPMSGAILNNI-NTRLDAHTLSVLLQHSESKLVFVD 119 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~la-~~~~G~~~~~l-~~~~~~~~l~~~l~~~~~~~i~~~ 119 (330)
+++||.|.+..+........+.. +...|+.+..+ +.. ..+.+...++. ++++++..
T Consensus 94 ~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-d~~~l~~~i~~-~~~~v~~~ 151 (421)
T 2ctz_A 94 AQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREE-RPEEFLALTDE-KTRAWWVE 151 (421)
T ss_dssp CCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTC-CHHHHHHHCCT-TEEEEEEE
T ss_pred hCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCC-CHHHHHHhhcc-CCeEEEEE
Confidence 46888888877777665444321 24568877777 543 56777777654 55566543
No 193
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=22.47 E-value=1.9e+02 Score=24.52 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=37.0
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhc-----CCcEEEEcc
Q 048729 62 IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHS-----ESKLVFVDH 120 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~-----~~~~i~~~~ 120 (330)
.++||.|++..|.+..+.. ++...|+.++.++. ...+.+...++.. ++++++..+
T Consensus 124 ~~~gd~v~~~~~~~~~~~~---~~~~~g~~~~~~~~-~d~~~l~~~l~~~~~~~~~~~~v~~~~ 183 (399)
T 3tqx_A 124 LGPEDAIISDELNHASIID---GIRLCKAQRYRYKN-NAMGDLEAKLKEADEKGARFKLIATDG 183 (399)
T ss_dssp CCTTCEEEEETTCCHHHHH---HHHSCCSEEEEECT-TCTTHHHHHHHHHHTTTCSSEEEEEES
T ss_pred cCCCCEEEECCcccHHHHH---HHHHcCCceeEeCC-CCHHHHHHHHHhhhccCCCceEEEEeC
Confidence 4688888888777766443 45567877776653 4556777777764 667776654
No 194
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=22.43 E-value=2.3e+02 Score=24.48 Aligned_cols=55 Identities=11% Similarity=0.094 Sum_probs=36.2
Q ss_pred HHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCc-EEeecCCCCCHHHHHHHHHhcCCcE
Q 048729 57 LSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGA-ILNNINTRLDAHTLSVLLQHSESKL 115 (330)
Q Consensus 57 L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~-~~~~l~~~~~~~~l~~~l~~~~~~~ 115 (330)
+...++++||+|++...-....+++.+|- ..|+ .++.+.. ++++ ..++++.+++.
T Consensus 178 l~~~~~~~g~~VlV~GaG~vG~~aiqlAk-~~Ga~~Vi~~~~--~~~~-~~~a~~lGa~~ 233 (398)
T 1kol_A 178 AVTAGVGPGSTVYVAGAGPVGLAAAASAR-LLGAAVVIVGDL--NPAR-LAHAKAQGFEI 233 (398)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEEES--CHHH-HHHHHHTTCEE
T ss_pred HHHcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCCeEEEEcC--CHHH-HHHHHHcCCcE
Confidence 34668999999999885445666665554 5687 5555543 3444 34567788874
No 195
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=22.14 E-value=3.1e+02 Score=24.87 Aligned_cols=60 Identities=8% Similarity=0.093 Sum_probs=37.8
Q ss_pred HcC-CCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeec-CCCCCHHHHHHHHHhcCCcEEEEcc
Q 048729 59 SVG-IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNI-NTRLDAHTLSVLLQHSESKLVFVDH 120 (330)
Q Consensus 59 ~~g-~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l-~~~~~~~~l~~~l~~~~~~~i~~~~ 120 (330)
+.| +++|+.|.....-+....++ +++...|..++.+ +...+ ..-...++.++++++++..
T Consensus 106 ~~g~~~~g~~vv~~ssGN~g~a~A-~~a~~~G~~~~iv~p~~~~-~~k~~~~~~~GA~v~~~~~ 167 (527)
T 3pc3_A 106 EQGLLKPGYTIIEPTSGNTGIGLA-MACAVKGYKCIIVMPEKMS-NEKVSALRTLGAKIIRTPT 167 (527)
T ss_dssp HHTCCCTTCEEEEECSSHHHHHHH-HHHHHHTCEEEEEEETTSC-HHHHHHHHHTTCEEEEECT
T ss_pred HcCCCCCCCEEEEeCCCHHHHHHH-HHHHHhCCeEEEEEcCCCC-HHHHHHHHHCCCEEEEeCC
Confidence 345 57888776543333444334 5666778865544 44444 4556688999999998864
No 196
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*
Probab=22.02 E-value=3.2e+02 Score=22.95 Aligned_cols=77 Identities=10% Similarity=0.123 Sum_probs=45.5
Q ss_pred eeecHHHHHHHHHH---HHHHHHHcCCCCCCEEEEECCC-CHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCc
Q 048729 39 TTYTWSETHRRCLQ---VASSLSSVGIQRGHVVSVVAPN-VPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESK 114 (330)
Q Consensus 39 ~~~T~~el~~~~~~---~a~~L~~~g~~~gd~V~~~~~~-~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~ 114 (330)
..+++.+..-.... .-+.|...++++|++|++.... .....++.++....|+.++.+.. +++.+. .+++.+.+
T Consensus 142 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~--~~~~~~-~~~~~g~~ 218 (347)
T 1jvb_A 142 RRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDV--REEAVE-AAKRAGAD 218 (347)
T ss_dssp SSSCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEES--SHHHHH-HHHHHTCS
T ss_pred CCCCHHHcccchhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcC--CHHHHH-HHHHhCCC
Confidence 34666654321111 2233456789999999999987 46666665555433887666553 234433 44566776
Q ss_pred EEEE
Q 048729 115 LVFV 118 (330)
Q Consensus 115 ~i~~ 118 (330)
.++.
T Consensus 219 ~~~~ 222 (347)
T 1jvb_A 219 YVIN 222 (347)
T ss_dssp EEEE
T ss_pred EEec
Confidence 6553
No 197
>2ayi_A Aminopeptidase T; metallopeptidase, hydrolase; 3.70A {Thermus thermophilus} SCOP: e.60.1.1
Probab=21.93 E-value=1.5e+02 Score=26.15 Aligned_cols=49 Identities=20% Similarity=0.178 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHH--cCCCCCCEEEEECCCC-HHH-HHHHHHhhhcCcEEeec
Q 048729 47 HRRCLQVASSLSS--VGIQRGHVVSVVAPNV-PSM-YELQFGVPMSGAILNNI 95 (330)
Q Consensus 47 ~~~~~~~a~~L~~--~g~~~gd~V~~~~~~~-~~~-~~~~la~~~~G~~~~~l 95 (330)
..+.+++|..+.+ .++++|+.|.+..+.. .++ -.+.-++...|+-++.+
T Consensus 5 ~~~l~k~A~~~v~~~~~lq~Ge~vlI~~~~~~~~l~r~l~~~a~~~Ga~~v~v 57 (408)
T 2ayi_A 5 KRNLEKLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTV 57 (408)
T ss_dssp HHHHHHHHHHHHHTTTCCCTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHHhCcCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEEE
Confidence 4567778888774 4689999999999965 444 34557788999977653
No 198
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=21.93 E-value=3.4e+02 Score=22.43 Aligned_cols=62 Identities=11% Similarity=0.095 Sum_probs=36.5
Q ss_pred HHcC-CCCCCEEEEECCCCHHHHHHHHHhhhcCcEEee-cCCCCCHHHHHHHHHhcCCcEEEEccc
Q 048729 58 SSVG-IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNN-INTRLDAHTLSVLLQHSESKLVFVDHL 121 (330)
Q Consensus 58 ~~~g-~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~-l~~~~~~~~l~~~l~~~~~~~i~~~~~ 121 (330)
.+.| +++|+.|.....-+....++ +++...|..++. ++...+. .-...++.++++++++...
T Consensus 57 ~~~g~~~~g~~vv~assGN~g~a~A-~~a~~~G~~~~iv~p~~~~~-~k~~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 57 EKAGKLKPGDTIVEPTSGNTGIGLA-MVAAAKGYKAVLVMPDTMSL-ERRNLLRAYGAELVLTPGA 120 (308)
T ss_dssp HHTTCCCTTCEEEEECCHHHHHHHH-HHHHHHTCEEEEEEESCSCH-HHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCEEEEeCCCHHHHHHH-HHHHHcCCCEEEEECCCCCH-HHHHHHHHcCCEEEEECCC
Confidence 3445 36676655533322333333 555667885544 4444454 4555789999999998764
No 199
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Probab=21.60 E-value=2.6e+02 Score=23.78 Aligned_cols=57 Identities=9% Similarity=-0.003 Sum_probs=37.7
Q ss_pred HcCCCCCCEEEEECCCCHHHHHHHHHhhhcCc-EEeecCCCCCHHHHHHHHHhcCCcEEEEc
Q 048729 59 SVGIQRGHVVSVVAPNVPSMYELQFGVPMSGA-ILNNINTRLDAHTLSVLLQHSESKLVFVD 119 (330)
Q Consensus 59 ~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~-~~~~l~~~~~~~~l~~~l~~~~~~~i~~~ 119 (330)
..++++||+|++...-....+++.+|- ..|+ .++.+..+ +++ ..++++.+++.++..
T Consensus 186 ~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~~--~~~-~~~a~~lGa~~vi~~ 243 (373)
T 1p0f_A 186 TAKVTPGSTCAVFGLGGVGFSAIVGCK-AAGASRIIGVGTH--KDK-FPKAIELGATECLNP 243 (373)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHH-HHTCSEEEEECSC--GGG-HHHHHHTTCSEEECG
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEECCC--HHH-HHHHHHcCCcEEEec
Confidence 568999999999986446666666654 5687 56555532 222 335567888877643
No 200
>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}
Probab=21.51 E-value=2.8e+02 Score=23.28 Aligned_cols=76 Identities=12% Similarity=0.071 Sum_probs=46.6
Q ss_pred eecHHHHHHHHHHHHH---HH-HHcCCCCCCEEEEECCCC-HHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCc
Q 048729 40 TYTWSETHRRCLQVAS---SL-SSVGIQRGHVVSVVAPNV-PSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESK 114 (330)
Q Consensus 40 ~~T~~el~~~~~~~a~---~L-~~~g~~~gd~V~~~~~~~-~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~ 114 (330)
.+++.+.......++. .| ...++++|++|++....+ .......++. ..|+.++.+..+ .+.+ ..+++.+++
T Consensus 131 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~-~~Ga~Vi~~~~~--~~~~-~~~~~~ga~ 206 (342)
T 4eye_A 131 QLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAK-GMGAKVIAVVNR--TAAT-EFVKSVGAD 206 (342)
T ss_dssp TSCHHHHHHHTTHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEESS--GGGH-HHHHHHTCS
T ss_pred CCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHH-HcCCEEEEEeCC--HHHH-HHHHhcCCc
Confidence 4778776443333332 23 345889999999999855 5666555544 678877766543 2222 355566777
Q ss_pred EEEEc
Q 048729 115 LVFVD 119 (330)
Q Consensus 115 ~i~~~ 119 (330)
.++..
T Consensus 207 ~v~~~ 211 (342)
T 4eye_A 207 IVLPL 211 (342)
T ss_dssp EEEES
T ss_pred EEecC
Confidence 76643
No 201
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}
Probab=21.32 E-value=2.4e+02 Score=23.68 Aligned_cols=54 Identities=13% Similarity=0.038 Sum_probs=36.1
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHhhhc-CcEEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729 61 GIQRGHVVSVVAPNVPSMYELQFGVPMS-GAILNNINTRLDAHTLSVLLQHSESKLVFV 118 (330)
Q Consensus 61 g~~~gd~V~~~~~~~~~~~~~~la~~~~-G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~ 118 (330)
++ +||+|++...-....+.+.+|-... |+.++.+.. +++.+ .++++.+++.++.
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~vi~ 222 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISR--SKKHR-DFALELGADYVSE 222 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECS--CHHHH-HHHHHHTCSEEEC
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeC--CHHHH-HHHHHhCCCEEec
Confidence 88 9999999999446667766665432 887666553 34443 3556677776653
No 202
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=20.89 E-value=2.6e+02 Score=23.79 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=39.5
Q ss_pred HHHHcCCC-CCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729 56 SLSSVGIQ-RGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV 118 (330)
Q Consensus 56 ~L~~~g~~-~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~ 118 (330)
.|...+++ +|++|++...-.....++.+|- ..|+.++.+.. +++.+....++.+++.++.
T Consensus 178 al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~-~~Ga~Vi~~~~--~~~~~~~~~~~lGa~~v~~ 238 (366)
T 1yqd_A 178 PLKYFGLDEPGKHIGIVGLGGLGHVAVKFAK-AFGSKVTVIST--SPSKKEEALKNFGADSFLV 238 (366)
T ss_dssp HHHHTTCCCTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEES--CGGGHHHHHHTSCCSEEEE
T ss_pred HHHhcCcCCCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeC--CHHHHHHHHHhcCCceEEe
Confidence 35566888 9999999986446666665554 56887665553 2344444555778876654
No 203
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=20.87 E-value=67 Score=27.68 Aligned_cols=57 Identities=12% Similarity=0.130 Sum_probs=34.9
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHhhhcCc--EEeecC-----CCCCHHHHHHHHHhcCCcEEEE
Q 048729 62 IQRGHVVSVVAPNVPSMYELQFGVPMSGA--ILNNIN-----TRLDAHTLSVLLQHSESKLVFV 118 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~la~~~~G~--~~~~l~-----~~~~~~~l~~~l~~~~~~~i~~ 118 (330)
+++||.|++..+....+.....++...|+ .+++++ .....+.+...++..++++++.
T Consensus 106 ~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~ 169 (407)
T 2dkj_A 106 MEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVA 169 (407)
T ss_dssp CCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEE
T ss_pred cCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhhcCCeEEEE
Confidence 46899998887765444211122223343 455552 2466888988888667787776
No 204
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=20.87 E-value=2.5e+02 Score=23.88 Aligned_cols=76 Identities=13% Similarity=0.031 Sum_probs=47.4
Q ss_pred eeecHHHHHHHHHHH---HHHH-HHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCc
Q 048729 39 TTYTWSETHRRCLQV---ASSL-SSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESK 114 (330)
Q Consensus 39 ~~~T~~el~~~~~~~---a~~L-~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~ 114 (330)
..+++.+........ .+.| ...++++|++|++...-.....+..+|- ..|+.++.+.. +++.+. ++++.+++
T Consensus 160 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~-~~Ga~Vi~~~~--~~~~~~-~~~~lGa~ 235 (363)
T 3uog_A 160 KSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAK-ATGAEVIVTSS--SREKLD-RAFALGAD 235 (363)
T ss_dssp TTSCHHHHHTTTTHHHHHHHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHH-HTTCEEEEEES--CHHHHH-HHHHHTCS
T ss_pred CCCCHHHHhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCEEEEEec--CchhHH-HHHHcCCC
Confidence 347787765332222 2233 3568999999999994335666555554 67987766653 344443 46778888
Q ss_pred EEEE
Q 048729 115 LVFV 118 (330)
Q Consensus 115 ~i~~ 118 (330)
.++.
T Consensus 236 ~vi~ 239 (363)
T 3uog_A 236 HGIN 239 (363)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 7775
No 205
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=20.73 E-value=3.7e+02 Score=22.40 Aligned_cols=62 Identities=13% Similarity=0.140 Sum_probs=40.1
Q ss_pred HHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcE-EeecCCCCCHHHHHHHHHhcCCcEEEEcc
Q 048729 55 SSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAI-LNNINTRLDAHTLSVLLQHSESKLVFVDH 120 (330)
Q Consensus 55 ~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~-~~~l~~~~~~~~l~~~l~~~~~~~i~~~~ 120 (330)
..+...++++|++|++...-....+...+|- ..|+. ++.++. ++++ ..++++.+++.++...
T Consensus 151 ~~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak-~~G~~~vi~~~~--~~~k-~~~a~~lGa~~~i~~~ 213 (346)
T 4a2c_A 151 HAFHLAQGCENKNVIIIGAGTIGLLAIQCAV-ALGAKSVTAIDI--SSEK-LALAKSFGAMQTFNSS 213 (346)
T ss_dssp HHHHHTTCCTTSEEEEECCSHHHHHHHHHHH-HTTCSEEEEEES--CHHH-HHHHHHTTCSEEEETT
T ss_pred HHHHHhccCCCCEEEEECCCCcchHHHHHHH-HcCCcEEEEEec--hHHH-HHHHHHcCCeEEEeCC
Confidence 3445678999999999987556655554444 56654 344443 3333 4577888988877644
No 206
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=20.72 E-value=1.5e+02 Score=21.43 Aligned_cols=11 Identities=18% Similarity=-0.103 Sum_probs=8.4
Q ss_pred cCCCcEEEeCC
Q 048729 28 YTDCPSLVYNN 38 (330)
Q Consensus 28 ~p~~~a~~~~~ 38 (330)
+|.++|++-.+
T Consensus 21 ~p~~iaVVGas 31 (144)
T 2d59_A 21 RYKKIALVGAS 31 (144)
T ss_dssp HCCEEEEETCC
T ss_pred CCCEEEEEccC
Confidence 48899999654
No 207
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=20.60 E-value=2.6e+02 Score=23.80 Aligned_cols=53 Identities=15% Similarity=0.325 Sum_probs=34.4
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCC---CCCHHHHHHHHHhcCCcEEE
Q 048729 62 IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINT---RLDAHTLSVLLQHSESKLVF 117 (330)
Q Consensus 62 ~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~---~~~~~~l~~~l~~~~~~~i~ 117 (330)
.++||.|++..|..+.+.. ++...|+.++.++. ....+.+...++..++++++
T Consensus 112 ~~~gd~Vl~~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~ 167 (397)
T 2zyj_A 112 LDEGSPVLLEAPSYMGAIQ---AFRLQGPRFLTVPAGEEGPDLDALEEVLKRERPRFLY 167 (397)
T ss_dssp CCTTCEEEEEESCCHHHHH---HHHTTCCEEEEEEEETTEECHHHHHHHHHHCCCSCEE
T ss_pred CCCCCEEEEeCCCcHHHHH---HHHHcCCEEEecCcCCCCCCHHHHHHHHhhcCCeEEE
Confidence 3678888888877666543 33456776554432 24677888888765677664
No 208
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=20.34 E-value=2.8e+02 Score=21.00 Aligned_cols=52 Identities=21% Similarity=0.365 Sum_probs=34.8
Q ss_pred CCCCCCEEEEECCCCH--HHHHHHHHhhhcCcEEeecCC--CCCHHHHHHHHHhcCC
Q 048729 61 GIQRGHVVSVVAPNVP--SMYELQFGVPMSGAILNNINT--RLDAHTLSVLLQHSES 113 (330)
Q Consensus 61 g~~~gd~V~~~~~~~~--~~~~~~la~~~~G~~~~~l~~--~~~~~~l~~~l~~~~~ 113 (330)
|+.+|+.+++..++.. ..++..++. ..|..++.++. ..+.+.+..+.+..+.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~~~~~~~~~~~~~~~~~~~ 71 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL-LSGKKVAYVDTEGGFSPERLVQMAETRGL 71 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH-HHCSEEEEEESSCCCCHHHHHHHHHTTTC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH-HcCCcEEEEECCCCCCHHHHHHHHHhcCC
Confidence 7999999999999984 344444544 55655555554 3477777777665543
No 209
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=20.34 E-value=4.5e+02 Score=23.20 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=28.8
Q ss_pred CCCCEEEEECCCCHHHHHHHH-HhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729 63 QRGHVVSVVAPNVPSMYELQF-GVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV 118 (330)
Q Consensus 63 ~~gd~V~~~~~~~~~~~~~~l-a~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~ 118 (330)
++||.|.+..+....+...+- .+...|+.+..++.. ..+.+...++...+++++.
T Consensus 151 ~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-d~~~l~~ai~~~tv~lV~l 206 (445)
T 1qgn_A 151 PAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPA-DVGALELALNQKKVNLFFT 206 (445)
T ss_dssp CSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSS-CHHHHHHHHHHSCEEEEEE
T ss_pred CCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHHhccCCCCEEEE
Confidence 567777666655544333221 234556666555543 5666666665432255543
No 210
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural genomics, PSI-2, protei structure initiative; 1.71A {Bacteroides fragilis} PDB: 3slr_A
Probab=20.19 E-value=4.3e+02 Score=23.00 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHh------hhcCcEEeecCCCCCHHHHHHHHHhcCC---c
Q 048729 44 SETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGV------PMSGAILNNINTRLDAHTLSVLLQHSES---K 114 (330)
Q Consensus 44 ~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~------~~~G~~~~~l~~~~~~~~l~~~l~~~~~---~ 114 (330)
.++...+..+-..|++.|+ .++++..+....+...+.- -..+...+.....-.++.+.+++++.+. .
T Consensus 255 g~~ypgv~e~L~~Lk~~Gi----~laI~Snn~~~~v~~~l~~~~~~~l~l~~~~~v~~~~KPKp~~l~~al~~Lgl~pee 330 (387)
T 3nvb_A 255 GKAFTEFQEWVKKLKNRGI----IIAVCSKNNEGKAKEPFERNPEMVLKLDDIAVFVANWENKADNIRTIQRTLNIGFDS 330 (387)
T ss_dssp HHHHHHHHHHHHHHHHTTC----EEEEEEESCHHHHHHHHHHCTTCSSCGGGCSEEEEESSCHHHHHHHHHHHHTCCGGG
T ss_pred cccCHHHHHHHHHHHHCCC----EEEEEcCCCHHHHHHHHhhccccccCccCccEEEeCCCCcHHHHHHHHHHhCcCccc
Confidence 4677788888889988777 7999999998877766643 1234444444555557788888888876 5
Q ss_pred EEEEcccchHH
Q 048729 115 LVFVDHLHTYL 125 (330)
Q Consensus 115 ~i~~~~~~~~~ 125 (330)
++++++...+.
T Consensus 331 ~v~VGDs~~Di 341 (387)
T 3nvb_A 331 MVFLDDNPFER 341 (387)
T ss_dssp EEEECSCHHHH
T ss_pred EEEECCCHHHH
Confidence 78887776653
No 211
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=20.11 E-value=3.3e+02 Score=23.47 Aligned_cols=46 Identities=7% Similarity=0.018 Sum_probs=21.4
Q ss_pred CCCCEEEEECCCCHHHHHHHH-HhhhcCcEEeecCCCCCHHHHHHHHH
Q 048729 63 QRGHVVSVVAPNVPSMYELQF-GVPMSGAILNNINTRLDAHTLSVLLQ 109 (330)
Q Consensus 63 ~~gd~V~~~~~~~~~~~~~~l-a~~~~G~~~~~l~~~~~~~~l~~~l~ 109 (330)
++||.|.+..+........+. .+...|+.+..++.. ..+.+...++
T Consensus 103 ~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-d~~~l~~~i~ 149 (403)
T 3cog_A 103 KAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCS-KIKLLEAAIT 149 (403)
T ss_dssp CTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTT-SHHHHHHHCC
T ss_pred CCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCC-CHHHHHHhcC
Confidence 456666665555544332221 223445555544433 3444544443
No 212
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}
Probab=20.08 E-value=2.7e+02 Score=24.03 Aligned_cols=54 Identities=17% Similarity=0.140 Sum_probs=36.5
Q ss_pred HHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCc-EEeecCCCCCHHHHHHHHHhcCCc
Q 048729 57 LSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGA-ILNNINTRLDAHTLSVLLQHSESK 114 (330)
Q Consensus 57 L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~-~~~~l~~~~~~~~l~~~l~~~~~~ 114 (330)
|...++++||+|++...-....+++.+|- ..|+ .++.+.. +++++ .++++.++.
T Consensus 178 l~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~--~~~~~-~~a~~lGa~ 232 (398)
T 2dph_A 178 CVSAGVKPGSHVYIAGAGPVGRCAAAGAR-LLGAACVIVGDQ--NPERL-KLLSDAGFE 232 (398)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHH-HHTCSEEEEEES--CHHHH-HHHHTTTCE
T ss_pred HHHcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEEcC--CHHHH-HHHHHcCCc
Confidence 45678999999999986445666666655 4687 6665553 34444 456777886
No 213
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}
Probab=20.07 E-value=2.6e+02 Score=23.78 Aligned_cols=78 Identities=10% Similarity=0.132 Sum_probs=48.9
Q ss_pred eecHHHHHHHHHHHHH---HH-HHcCCC-----CCCEEEEECC-CCHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHH
Q 048729 40 TYTWSETHRRCLQVAS---SL-SSVGIQ-----RGHVVSVVAP-NVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQ 109 (330)
Q Consensus 40 ~~T~~el~~~~~~~a~---~L-~~~g~~-----~gd~V~~~~~-~~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~ 109 (330)
.+++.+.......... .| ...+++ +|++|++... -....++..+|-...|+.++.+.. ++++ ..+++
T Consensus 138 ~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~--~~~~-~~~~~ 214 (363)
T 4dvj_A 138 TLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATAS--RPET-QEWVK 214 (363)
T ss_dssp TSCHHHHHTSHHHHHHHHHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECS--SHHH-HHHHH
T ss_pred CCCHHHHHhhhhHHHHHHHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeC--CHHH-HHHHH
Confidence 3677766533222111 22 345777 8999999984 457777777776556887776664 2334 34567
Q ss_pred hcCCcEEEEcc
Q 048729 110 HSESKLVFVDH 120 (330)
Q Consensus 110 ~~~~~~i~~~~ 120 (330)
+.+++.++...
T Consensus 215 ~lGad~vi~~~ 225 (363)
T 4dvj_A 215 SLGAHHVIDHS 225 (363)
T ss_dssp HTTCSEEECTT
T ss_pred HcCCCEEEeCC
Confidence 78888877543
Done!