Query 048730
Match_columns 195
No_of_seqs 233 out of 1076
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 21:52:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048730.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048730hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a2n_B Isoprenylcysteine carbo 99.8 8.1E-20 2.8E-24 150.9 12.7 110 86-195 77-194 (194)
2 2bn5_B U1 small nuclear ribonu 17.3 66 0.0023 17.5 1.5 22 5-29 1-22 (26)
3 1pp9_G Ubiquinol-cytochrome C 10.5 1.9E+02 0.0066 19.9 2.8 36 150-185 44-79 (81)
4 1pxq_A Subtilisin A; thioether 9.9 67 0.0023 18.6 0.2 9 4-12 16-24 (35)
5 3arc_Y Protein YCF12; PSII, me 9.3 3E+02 0.01 15.5 2.8 20 34-53 3-23 (29)
6 3tgu_G UQCRQ, mitochondrial ub 7.7 3.4E+02 0.012 18.6 3.2 31 155-185 49-79 (81)
7 4djc_B Sodium channel protein 7.6 1.3E+02 0.0045 17.4 0.8 9 2-10 18-26 (35)
8 1nkz_B Light-harvesting protei 5.5 3.9E+02 0.013 16.1 2.2 23 28-50 6-28 (41)
9 4h4g_A (3R)-hydroxymyristoyl-[ 5.3 1.9E+02 0.0065 21.9 0.8 16 10-25 15-32 (160)
10 2wdq_C Succinate dehydrogenase 4.9 4.3E+02 0.015 19.0 2.6 34 3-46 7-41 (129)
No 1
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=99.82 E-value=8.1e-20 Score=150.92 Aligned_cols=110 Identities=19% Similarity=0.212 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCC----CCcccccCCccccccCchhHHHHHHHHHHHHHhhhHHHHHH-HHHH
Q 048730 86 RFLIGLVIFFCGMWVNIWSDKVLVGLKKQG----GGYKVPRGGWFELVSCPNYFGEILEWFGWAVMTWSWVGLGF-FLYT 160 (195)
Q Consensus 86 ~~~iGl~Lf~iG~~~n~~sd~~L~~LR~~g----~~~~iP~gGlFryVr~PnYfgEiL~wlGfal~t~S~~~~~f-~l~~ 160 (195)
..++|++++++|..+..+++.+|++..+.. ++++++++|+|+|+|||||+|+++.++|++++++|+..++. ++..
T Consensus 77 ~~~~G~~l~l~G~~l~~~a~~~Lg~~f~~~~~~~~~~~Lvt~G~y~~vRHP~Y~G~~l~~~g~~l~~~s~~~~~~~~~~~ 156 (194)
T 4a2n_B 77 IRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSNWVVLIFGIVAW 156 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGCCSSCCEETTCCCCCSSTTTTBSSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCeeeecCcchhccCccHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 788999999999999999999997764432 57999999999999999999999999999999988766553 2222
Q ss_pred HHHHHHHHHHHHHHHHHhhCcccc---cCcceeccccC
Q 048730 161 CANLVPRALAHHKWYLEKFGEDYP---KHRKAVIPFLY 195 (195)
Q Consensus 161 ~~~l~~rA~~~~~wY~~kFGeeYp---~~Rk~lIPfI~ 195 (195)
...+..++..||+.++++||+||. ++++++||+|.
T Consensus 157 ~~~~~~ri~~EE~~L~~~fG~~Y~~Y~~rv~r~iP~i~ 194 (194)
T 4a2n_B 157 AILYFIRVPKEEELLIEEFGDEYIEYMGKTGRLFPKVV 194 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHCBSSSCC--
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHhCCeeCceeC
Confidence 233457888999999999997665 46779999973
No 2
>2bn5_B U1 small nuclear ribonucleoprotein 70 kDa; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster}
Probab=17.28 E-value=66 Score=17.46 Aligned_cols=22 Identities=32% Similarity=0.649 Sum_probs=15.3
Q ss_pred CCCchhhhhcccCCCCcccCCCCCc
Q 048730 5 RPIPRFEKIKSFVPPPMASSSSSSS 29 (195)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (195)
||-|.-...-|.-|||+. |.+.
T Consensus 1 rpppahhnmfsvppppi~---gr~n 22 (26)
T 2bn5_B 1 RPPPAHHNMFSVPPPPIL---GRGX 22 (26)
T ss_dssp CCCCCCCCCCSCCCCSCC---CCC-
T ss_pred CcCCccCceecCCCCCcc---cCCc
Confidence 566766777788888888 6553
No 3
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=10.51 E-value=1.9e+02 Score=19.90 Aligned_cols=36 Identities=6% Similarity=-0.106 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccccc
Q 048730 150 SWVGLGFFLYTCANLVPRALAHHKWYLEKFGEDYPK 185 (195)
Q Consensus 150 S~~~~~f~l~~~~~l~~rA~~~~~wY~~kFGeeYp~ 185 (195)
++.-++..+.+...+..|+.+++..+..|=++||..
T Consensus 44 ~~l~v~pPfv~~Y~i~~Wa~~~~e~~~rKnp~d~~n 79 (81)
T 1pp9_G 44 CILRVAPPFVAFYLVYTWGTQEFEKSKRKNPAAYEN 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSCC-----
T ss_pred cceeeehhHHHHHHHHHHHHHHHHHHhCCCHHHhcc
Confidence 334333344455556678888888887777777753
No 4
>1pxq_A Subtilisin A; thioether bridge, cyclic peptide, bacteriocin, antimicrobial; HET: 2TL DPN; NMR {Bacillus subtilis} SCOP: j.5.1.2
Probab=9.91 E-value=67 Score=18.64 Aligned_cols=9 Identities=56% Similarity=0.966 Sum_probs=6.4
Q ss_pred CCCCchhhh
Q 048730 4 RRPIPRFEK 12 (195)
Q Consensus 4 ~~~~~~~~~ 12 (195)
.-|||.||-
T Consensus 16 dgpipdfev 24 (35)
T 1pxq_A 16 DGPIPDFEI 24 (35)
T ss_dssp TTTCCCSCC
T ss_pred cCCCCCchh
Confidence 358888873
No 5
>3arc_Y Protein YCF12; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3a0b_Y* 3a0h_Y*
Probab=9.27 E-value=3e+02 Score=15.52 Aligned_cols=20 Identities=15% Similarity=0.188 Sum_probs=10.0
Q ss_pred HHHHHHHHHHh-hhhhhhhhh
Q 048730 34 FNNCLLTLYLI-APPTFISLR 53 (195)
Q Consensus 34 ~~~~~~~~~~~-~~~~~~~l~ 53 (195)
++...++++++ |+.|.+.++
T Consensus 3 ~QL~~l~lIv~aGP~VI~lLa 23 (29)
T 3arc_Y 3 AQLTMIAMIGIAGPMIIFLLA 23 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHhcCChheeehh
Confidence 45555555555 455444443
No 6
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=7.66 E-value=3.4e+02 Score=18.63 Aligned_cols=31 Identities=13% Similarity=-0.005 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCccccc
Q 048730 155 GFFLYTCANLVPRALAHHKWYLEKFGEDYPK 185 (195)
Q Consensus 155 ~f~l~~~~~l~~rA~~~~~wY~~kFGeeYp~ 185 (195)
+..+.+...+..|+.++++.+..|=++||..
T Consensus 49 ~pPfi~~Y~i~~Wa~~~ne~l~rKnpady~n 79 (81)
T 3tgu_G 49 APPFLGAYLLYSWGTQEFERLKRKNPADYEN 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCGGGSST
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCHHHhcc
Confidence 3334444555568888887777777777754
No 7
>4djc_B Sodium channel protein type 5 subunit alpha; EF-hand, calcium-binding protein; 1.35A {Homo sapiens}
Probab=7.63 E-value=1.3e+02 Score=17.43 Aligned_cols=9 Identities=56% Similarity=1.032 Sum_probs=6.2
Q ss_pred CCCCCCchh
Q 048730 2 KSRRPIPRF 10 (195)
Q Consensus 2 ~~~~~~~~~ 10 (195)
|+.+||||=
T Consensus 18 kp~K~iprP 26 (35)
T 4djc_B 18 KPQKPIPRP 26 (35)
T ss_pred CCCCCcCCC
Confidence 567788773
No 8
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=5.54 E-value=3.9e+02 Score=16.14 Aligned_cols=23 Identities=0% Similarity=0.030 Sum_probs=12.9
Q ss_pred CchHHHHHHHHHHHHHhhhhhhh
Q 048730 28 SSDQAFFNNCLLTLYLIAPPTFI 50 (195)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~ 50 (195)
+.++++-..+...+.+...+.++
T Consensus 6 ~EA~EfH~~~~~~~~~F~~iA~v 28 (41)
T 1nkz_B 6 EQSEELHKYVIDGTRVFLGLALV 28 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777666655554444444
No 9
>4h4g_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Burkholderia thailandensis}
Probab=5.27 E-value=1.9e+02 Score=21.85 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=14.0
Q ss_pred hhhhcccCC--CCcccCC
Q 048730 10 FEKIKSFVP--PPMASSS 25 (195)
Q Consensus 10 ~~~~~~~~~--~~~~~~~ 25 (195)
.++|++..| +||.|.|
T Consensus 15 i~~I~~~lPhR~PfLlvD 32 (160)
T 4h4g_A 15 IHKILTLLPHRYPILLVD 32 (160)
T ss_dssp HHHHHHHCCCCTTSCCCC
T ss_pred HHHHHHHCCCCCCeEEEE
Confidence 478999999 7999999
No 10
>2wdq_C Succinate dehydrogenase cytochrome B556 subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_C* 2acz_C* 1nek_C* 2wdr_C* 2wdv_C* 2wp9_C* 2ws3_C* 2wu5_C* 2wu2_C*
Probab=4.91 E-value=4.3e+02 Score=19.01 Aligned_cols=34 Identities=15% Similarity=0.360 Sum_probs=16.7
Q ss_pred CCCCC-chhhhhcccCCCCcccCCCCCchHHHHHHHHHHHHHhhh
Q 048730 3 SRRPI-PRFEKIKSFVPPPMASSSSSSSDQAFFNNCLLTLYLIAP 46 (195)
Q Consensus 3 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (195)
..||+ |.....| ||+.+. .++.++.--+...+++
T Consensus 7 ~~RP~sphl~iyr----~~~t~~------~silhRiTGv~L~~~~ 41 (129)
T 2wdq_C 7 KQRPVNLDLQTIR----FPITAI------ASILHRVSGVITFVAV 41 (129)
T ss_dssp -CCCBCCCGGGSC----CCHHHH------HHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCcCccC----CcHHHH------HHHHHHHHHHHHHHHH
Confidence 45777 5555444 333322 4677775544444433
Done!