Query 048730
Match_columns 195
No_of_seqs 233 out of 1076
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 21:52:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048730.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048730hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e7la1 a.140.4.1 (A:104-157) 10.7 61 0.0044 19.5 1.8 13 131-143 2-14 (54)
2 d3dtub2 f.17.2.1 (B:30-129) Ba 10.6 1.6E+02 0.012 18.7 4.3 39 17-55 8-50 (100)
3 d1u1za_ d.38.1.6 (A:) (3R)-hyd 9.2 56 0.0041 22.3 1.4 16 10-25 4-21 (145)
4 d1z6ba1 d.38.1.6 (A:84-229) (3 8.8 46 0.0034 22.9 0.8 16 10-25 6-23 (146)
5 d1fftb2 f.17.2.1 (B:27-117) Cy 6.8 1.3E+02 0.0092 19.1 2.3 29 31-59 15-43 (91)
6 d2e74e1 f.23.24.1 (E:1-32) Pet 6.1 1.4E+02 0.01 15.5 1.7 7 48-54 10-16 (32)
7 d1m56d_ f.23.8.1 (D:) Bacteria 5.4 2.8E+02 0.02 15.5 3.2 23 30-52 12-39 (42)
8 d1qled_ f.23.8.1 (D:) Bacteria 5.3 2.9E+02 0.021 15.5 3.2 23 30-52 13-40 (43)
9 d2axtj1 f.23.32.1 (J:7-40) Pho 5.1 2.4E+02 0.018 15.0 2.4 20 36-55 5-24 (34)
10 d1h3ga2 b.71.1.1 (A:518-600) C 4.8 69 0.005 20.5 -0.1 14 118-131 4-17 (83)
No 1
>d1e7la1 a.140.4.1 (A:104-157) Recombination endonuclease VII, C-terminal and dimerization domains {Bacteriophage T4 [TaxId: 10665]}
Probab=10.68 E-value=61 Score=19.46 Aligned_cols=13 Identities=31% Similarity=0.634 Sum_probs=10.3
Q ss_pred CchhHHHHHHHHH
Q 048730 131 CPNYFGEILEWFG 143 (195)
Q Consensus 131 ~PnYfgEiL~wlG 143 (195)
||||.+...-+++
T Consensus 2 Hp~~~~D~~K~FS 14 (54)
T d1e7la1 2 HPNFVGDKSKEFS 14 (54)
T ss_dssp CTHHHHHHHHHHH
T ss_pred CcchhhHHHHHHH
Confidence 8888888877764
No 2
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=10.61 E-value=1.6e+02 Score=18.69 Aligned_cols=39 Identities=13% Similarity=0.041 Sum_probs=21.5
Q ss_pred CCCCcccCCCCCc-hHHH---HHHHHHHHHHhhhhhhhhhhhe
Q 048730 17 VPPPMASSSSSSS-DQAF---FNNCLLTLYLIAPPTFISLRFL 55 (195)
Q Consensus 17 ~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~l~f~ 55 (195)
.|--|.+.|+++. ++++ ++..++++.++.+.|..++.++
T Consensus 8 ~~~ql~fqd~as~~a~~i~~l~~~v~~i~~~I~~~V~~~l~~~ 50 (100)
T d3dtub2 8 QPGGTGFQPSASPVATQIHWLDGFILVIIAAITIFVTLLILYA 50 (100)
T ss_dssp CTTCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666775554 4444 4455555555555555555553
No 3
>d1u1za_ d.38.1.6 (A:) (3R)-hydroxymyristoyl ACP dehydrase FabZ {Pseudomonas aeruginosa [TaxId: 287]}
Probab=9.17 E-value=56 Score=22.34 Aligned_cols=16 Identities=19% Similarity=0.559 Sum_probs=13.9
Q ss_pred hhhhcccCC--CCcccCC
Q 048730 10 FEKIKSFVP--PPMASSS 25 (195)
Q Consensus 10 ~~~~~~~~~--~~~~~~~ 25 (195)
.+.|++..| +||.|.|
T Consensus 4 ~~~I~~llPhR~PfllvD 21 (145)
T d1u1za_ 4 INEIREYLPHRYPFLLVD 21 (145)
T ss_dssp HHHHTTTCCCCTTSCCCC
T ss_pred HHHHHHhCCCCCCeEEEE
Confidence 578899998 7999999
No 4
>d1z6ba1 d.38.1.6 (A:84-229) (3R)-hydroxymyristoyl ACP dehydrase FabZ {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=8.80 E-value=46 Score=22.89 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=13.8
Q ss_pred hhhhcccCC--CCcccCC
Q 048730 10 FEKIKSFVP--PPMASSS 25 (195)
Q Consensus 10 ~~~~~~~~~--~~~~~~~ 25 (195)
.+.|++..| |||.|.|
T Consensus 6 ~~~I~~llPhr~Pfl~vD 23 (146)
T d1z6ba1 6 IEDIKKILPHRYPFLLVD 23 (146)
T ss_dssp HHHHHHHCCCCTTSCCCC
T ss_pred HHHHHHhCCCCCCeeEEE
Confidence 467889998 7999999
No 5
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=6.78 E-value=1.3e+02 Score=19.11 Aligned_cols=29 Identities=7% Similarity=0.159 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhheeccC
Q 048730 31 QAFFNNCLLTLYLIAPPTFISLRFLQAPY 59 (195)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~l~f~~a~y 59 (195)
++++...++.|.++.++|+.++.+.---|
T Consensus 15 ~~L~~~~~~i~~iv~v~V~~~~~~~~~ry 43 (91)
T d1fftb2 15 RSLILTAFGLMLIVVIPAILMAVGFAWKY 43 (91)
T ss_dssp HHHHHHHHHHTTTTTTHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhheee
Confidence 44555566667777777777776654444
No 6
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.11 E-value=1.4e+02 Score=15.52 Aligned_cols=7 Identities=57% Similarity=0.947 Sum_probs=3.4
Q ss_pred hhhhhhh
Q 048730 48 TFISLRF 54 (195)
Q Consensus 48 ~~~~l~f 54 (195)
||++|+|
T Consensus 10 vfialff 16 (32)
T d2e74e1 10 VFIALFF 16 (32)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4455544
No 7
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.42 E-value=2.8e+02 Score=15.47 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=12.6
Q ss_pred hHHHHHHHHH-----HHHHhhhhhhhhh
Q 048730 30 DQAFFNNCLL-----TLYLIAPPTFISL 52 (195)
Q Consensus 30 ~~~~~~~~~~-----~~~~~~~~~~~~l 52 (195)
.|.+|+-++- +..++++.+|.|+
T Consensus 12 QEKTF~gFik~~t~~~i~~i~~liflAi 39 (42)
T d1m56d_ 12 QEKTFAGFVRMVTWAAVVIVAALIFLAL 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667776553 2334556666655
No 8
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=5.25 E-value=2.9e+02 Score=15.47 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=12.6
Q ss_pred hHHHHHHHHH-----HHHHhhhhhhhhh
Q 048730 30 DQAFFNNCLL-----TLYLIAPPTFISL 52 (195)
Q Consensus 30 ~~~~~~~~~~-----~~~~~~~~~~~~l 52 (195)
.|.+|+-++- ..+++++.+|.|+
T Consensus 13 QEkTF~gFi~~~t~~~i~~i~~liflAi 40 (43)
T d1qled_ 13 QQATFAGFIKGATWVSILSIAVLVFLAL 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667776553 2334555566655
No 9
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.14 E-value=2.4e+02 Score=15.00 Aligned_cols=20 Identities=15% Similarity=0.077 Sum_probs=13.1
Q ss_pred HHHHHHHHhhhhhhhhhhhe
Q 048730 36 NCLLTLYLIAPPTFISLRFL 55 (195)
Q Consensus 36 ~~~~~~~~~~~~~~~~l~f~ 55 (195)
|++-+...+++++.+.++|-
T Consensus 5 Wlv~tv~G~~vi~~vG~FfY 24 (34)
T d2axtj1 5 WIVATVAGMGVIVIVGLFFY 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeehhhhhhHhheeeeee
Confidence 34445566778888888773
No 10
>d1h3ga2 b.71.1.1 (A:518-600) Cyclomaltodextrinase {Flavobacterium sp. 92 [TaxId: 197856]}
Probab=4.83 E-value=69 Score=20.45 Aligned_cols=14 Identities=7% Similarity=-0.083 Sum_probs=0.0
Q ss_pred cccccCCccccccC
Q 048730 118 YKVPRGGWFELVSC 131 (195)
Q Consensus 118 ~~iP~gGlFryVr~ 131 (195)
|..|..|.|-|.|+
T Consensus 4 Hf~P~~gvYvyfR~ 17 (83)
T d1h3ga2 4 HFGPEENTWVYFRY 17 (83)
T ss_dssp ECCCBTTEEEEEEE
T ss_pred eeccCCCEEEEEEE
Done!