Query 048731
Match_columns 904
No_of_seqs 490 out of 1329
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 12:30:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048731.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048731hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4731 Protein predicted to b 100.0 2.7E-72 5.8E-77 611.4 24.4 498 2-518 1-511 (512)
2 smart00686 DM13 Domain present 100.0 9.4E-34 2E-38 264.1 11.5 102 46-148 1-108 (108)
3 cd08760 Cyt_b561_FRRS1_like Eu 99.9 4.3E-27 9.3E-32 242.8 6.6 157 681-848 32-190 (191)
4 KOG4293 Predicted membrane pro 99.9 3.1E-23 6.8E-28 236.3 4.2 282 510-819 36-344 (403)
5 PF03351 DOMON: DOMON domain; 99.9 1E-20 2.2E-25 181.1 17.1 122 179-324 2-124 (124)
6 smart00664 DoH Possible catech 99.9 1.3E-20 2.8E-25 186.3 18.1 124 180-330 2-126 (148)
7 PF10517 DM13: Electron transf 99.9 1.3E-21 2.7E-26 184.3 9.6 96 42-141 1-107 (108)
8 smart00665 B561 Cytochrome b-5 99.9 7.1E-23 1.5E-27 198.6 0.8 125 687-814 1-129 (129)
9 PF03188 Cytochrom_B561: Eukar 99.8 5.8E-21 1.3E-25 186.6 2.4 127 687-816 1-132 (137)
10 KOG4731 Protein predicted to b 99.8 1.6E-19 3.4E-24 198.9 10.6 134 38-184 150-296 (512)
11 cd08554 Cyt_b561 Eukaryotic cy 99.8 2.1E-20 4.6E-25 181.6 1.4 127 685-814 2-131 (131)
12 PF03351 DOMON: DOMON domain; 99.8 1.2E-17 2.5E-22 160.0 16.7 119 517-644 1-124 (124)
13 cd08764 Cyt_b561_CG1275_like N 99.8 4.6E-19 9.9E-24 184.3 5.7 169 683-857 22-203 (214)
14 smart00664 DoH Possible catech 99.7 5E-17 1.1E-21 160.8 18.7 139 519-671 2-144 (148)
15 cd08761 Cyt_b561_CYB561D2_like 99.7 1.1E-18 2.3E-23 179.3 4.1 134 682-816 18-157 (183)
16 PLN02351 cytochromes b561 fami 99.7 2.2E-18 4.8E-23 180.2 6.1 165 684-855 49-226 (242)
17 cd08766 Cyt_b561_ACYB-1_like P 99.7 3.8E-18 8.3E-23 167.7 3.1 130 681-817 4-139 (144)
18 PLN02810 carbon-monoxide oxyge 99.7 2.9E-17 6.2E-22 170.6 7.1 160 682-848 44-215 (231)
19 PLN02680 carbon-monoxide oxyge 99.7 8.9E-17 1.9E-21 168.2 7.4 162 682-850 44-218 (232)
20 KOG1619 Cytochrome b [Energy p 99.7 1.3E-16 2.8E-21 165.1 7.4 171 682-858 52-234 (245)
21 KOG3568 Dopamine beta-monooxyg 99.7 2.2E-16 4.8E-21 174.5 9.3 141 171-341 32-174 (603)
22 cd08765 Cyt_b561_CYBRD1 Verteb 99.6 5.4E-17 1.2E-21 160.5 3.5 129 683-817 10-146 (153)
23 cd08762 Cyt_b561_CYBASC3 Verte 99.6 6.9E-17 1.5E-21 162.7 4.1 129 683-817 33-169 (179)
24 cd08763 Cyt_b561_CYB561 Verteb 99.6 6.6E-17 1.4E-21 158.8 3.1 128 683-816 5-138 (143)
25 cd00241 CDH_cytochrome Cellobi 99.3 1E-10 2.2E-15 119.7 17.1 144 519-673 22-174 (184)
26 PF10348 DUF2427: Domain of un 98.9 1.1E-10 2.4E-15 109.3 -1.1 89 679-775 12-103 (105)
27 KOG3568 Dopamine beta-monooxyg 98.6 1.1E-07 2.4E-12 106.6 9.1 126 508-645 31-159 (603)
28 PF04526 DUF568: Protein of un 97.5 0.00093 2E-08 62.4 10.4 87 555-661 1-89 (101)
29 cd00241 CDH_cytochrome Cellobi 96.7 0.037 8.1E-07 57.3 14.0 133 193-359 40-174 (184)
30 cd08761 Cyt_b561_CYB561D2_like 93.8 0.14 3.1E-06 52.8 6.7 94 715-816 17-116 (183)
31 cd08554 Cyt_b561 Eukaryotic cy 93.6 0.071 1.5E-06 51.9 3.9 91 719-817 2-95 (131)
32 cd08760 Cyt_b561_FRRS1_like Eu 92.7 0.14 3E-06 53.2 4.6 94 716-818 33-128 (191)
33 PF13301 DUF4079: Protein of u 92.3 0.22 4.8E-06 51.2 5.5 89 720-817 81-172 (175)
34 smart00665 B561 Cytochrome b-5 92.1 0.15 3.2E-06 49.6 3.7 90 721-818 1-94 (129)
35 KOG4293 Predicted membrane pro 91.7 0.071 1.5E-06 61.9 1.2 339 546-903 3-371 (403)
36 cd08764 Cyt_b561_CG1275_like N 91.4 0.25 5.4E-06 52.5 4.8 95 716-816 21-118 (214)
37 cd08766 Cyt_b561_ACYB-1_like P 91.4 0.52 1.1E-05 47.1 6.8 93 716-816 5-99 (144)
38 PF03188 Cytochrom_B561: Eukar 91.0 0.19 4.1E-06 49.0 3.2 89 721-818 1-95 (137)
39 cd08763 Cyt_b561_CYB561 Verteb 90.6 0.24 5.2E-06 49.4 3.6 92 718-817 6-100 (143)
40 PF00127 Copper-bind: Copper b 90.0 0.51 1.1E-05 43.7 5.0 76 414-501 17-98 (99)
41 PRK02710 plastocyanin; Provisi 89.0 1.1 2.4E-05 43.1 6.6 70 414-501 47-118 (119)
42 cd08762 Cyt_b561_CYBASC3 Verte 88.7 2 4.4E-05 44.4 8.5 115 689-817 11-130 (179)
43 TIGR03095 rusti_cyanin rusticy 88.5 6 0.00013 39.7 11.7 88 405-500 43-146 (148)
44 PLN02680 carbon-monoxide oxyge 86.7 2.3 5E-05 45.7 7.9 117 689-817 21-139 (232)
45 TIGR02656 cyanin_plasto plasto 86.2 2.1 4.6E-05 39.7 6.6 80 414-501 17-98 (99)
46 PF10348 DUF2427: Domain of un 83.9 0.79 1.7E-05 43.4 2.6 88 715-816 14-102 (105)
47 TIGR02657 amicyanin amicyanin. 83.8 5 0.00011 36.0 7.6 73 413-501 10-82 (83)
48 PLN02351 cytochromes b561 fami 82.5 6.7 0.00014 42.4 9.1 119 688-817 22-142 (242)
49 PF00033 Cytochrom_B_N: Cytoch 81.0 1.7 3.8E-05 44.0 4.0 96 721-816 11-127 (188)
50 cd08765 Cyt_b561_CYBRD1 Verteb 80.2 2 4.3E-05 43.4 4.0 93 717-817 10-107 (153)
51 PLN02810 carbon-monoxide oxyge 78.5 6.7 0.00015 42.1 7.5 116 689-816 21-138 (231)
52 PF13172 PepSY_TM_1: PepSY-ass 75.0 4 8.7E-05 30.5 3.4 30 788-817 2-31 (34)
53 PF09459 EB_dh: Ethylbenzene d 74.8 5.4 0.00012 43.8 5.8 47 277-324 202-249 (261)
54 TIGR02375 pseudoazurin pseudoa 73.9 8.7 0.00019 37.0 6.3 69 414-504 15-89 (116)
55 KOG1619 Cytochrome b [Energy p 72.6 2.9 6.3E-05 44.9 2.9 115 689-817 30-148 (245)
56 PF13706 PepSY_TM_3: PepSY-ass 71.1 5.8 0.00013 30.4 3.5 29 788-816 1-29 (37)
57 PF13473 Cupredoxin_1: Cupredo 69.2 10 0.00022 35.3 5.5 68 414-501 35-104 (104)
58 PF05297 Herpes_LMP1: Herpesvi 68.8 1.6 3.5E-05 47.6 0.0 85 754-854 105-190 (381)
59 PF00033 Cytochrom_B_N: Cytoch 68.4 1.3 2.8E-05 45.0 -0.8 132 685-817 9-175 (188)
60 PF00116 COX2: Cytochrome C ox 67.6 17 0.00036 35.2 6.7 68 414-502 46-120 (120)
61 PF01794 Ferric_reduct: Ferric 65.8 4 8.6E-05 38.5 2.1 56 756-814 1-56 (125)
62 PF01578 Cytochrom_C_asm: Cyto 61.7 12 0.00027 39.2 5.1 29 715-743 68-96 (214)
63 PF01292 Ni_hydr_CYTB: Prokary 61.7 14 0.00029 37.5 5.2 89 721-817 9-123 (182)
64 PF10067 DUF2306: Predicted me 61.5 15 0.00033 34.4 5.1 31 789-819 3-33 (103)
65 PF04238 DUF420: Protein of un 61.1 19 0.00041 35.6 5.8 44 792-839 78-121 (133)
66 COG3038 CybB Cytochrome B561 [ 60.2 18 0.0004 37.6 5.8 58 720-777 14-74 (181)
67 PF13630 SdpI: SdpI/YhfL prote 57.2 22 0.00048 30.9 5.1 31 787-817 19-49 (76)
68 TIGR03477 DMSO_red_II_gam DMSO 55.6 23 0.0005 37.6 5.7 41 284-325 144-184 (205)
69 TIGR02866 CoxB cytochrome c ox 52.6 42 0.00091 35.3 7.2 72 412-504 115-193 (201)
70 TIGR01583 formate-DH-gamm form 52.3 25 0.00054 37.0 5.4 29 789-817 102-130 (204)
71 PF07732 Cu-oxidase_3: Multico 51.6 31 0.00067 33.1 5.5 87 403-493 14-101 (117)
72 PF13301 DUF4079: Protein of u 50.7 6.1 0.00013 40.9 0.5 78 693-772 90-169 (175)
73 TIGR03102 halo_cynanin halocya 50.0 50 0.0011 31.9 6.6 71 414-501 42-114 (115)
74 PF04526 DUF568: Protein of un 45.7 2.7E+02 0.0058 26.3 11.1 77 223-328 1-79 (101)
75 PF10856 DUF2678: Protein of u 45.2 33 0.00072 33.0 4.4 53 751-815 29-81 (118)
76 PRK11513 cytochrome b561; Prov 44.6 15 0.00032 37.9 2.2 63 749-815 41-103 (176)
77 PF10365 DUF2436: Domain of un 44.1 38 0.00083 33.6 4.7 39 392-430 105-152 (161)
78 TIGR02125 CytB-hydogenase Ni/F 42.4 24 0.00052 36.8 3.5 27 792-818 113-139 (211)
79 PRK10179 formate dehydrogenase 42.1 43 0.00093 35.7 5.3 30 789-818 107-136 (217)
80 PF08507 COPI_assoc: COPI asso 42.0 60 0.0013 32.0 6.0 28 787-814 57-84 (136)
81 COG3794 PetE Plastocyanin [Ene 40.9 1E+02 0.0022 30.4 7.2 67 414-498 54-121 (128)
82 PF01292 Ni_hydr_CYTB: Prokary 40.8 16 0.00034 37.0 1.8 131 685-816 7-168 (182)
83 PF03929 PepSY_TM: PepSY-assoc 39.5 49 0.0011 23.8 3.5 26 791-816 1-26 (27)
84 COG2717 Predicted membrane pro 39.1 20 0.00043 38.1 2.2 110 693-814 51-168 (209)
85 PF07172 GRP: Glycine rich pro 38.0 10 0.00022 35.3 -0.2 24 5-28 2-25 (95)
86 PF14387 DUF4418: Domain of un 37.2 84 0.0018 30.8 6.0 28 715-742 28-58 (124)
87 TIGR02376 Cu_nitrite_red nitri 35.5 1.8E+02 0.0039 32.8 9.2 85 404-503 48-146 (311)
88 TIGR03144 cytochr_II_ccsB cyto 34.8 66 0.0014 34.8 5.4 26 717-742 91-116 (243)
89 PLN02844 oxidoreductase/ferric 34.7 47 0.001 41.8 4.8 24 791-814 191-214 (722)
90 COG3462 Predicted membrane pro 34.2 44 0.00096 31.8 3.4 27 790-816 5-31 (117)
91 PRK10263 DNA translocase FtsK; 32.4 75 0.0016 42.3 6.1 8 797-804 116-123 (1355)
92 PF10951 DUF2776: Protein of u 32.3 59 0.0013 36.1 4.4 85 723-817 155-244 (347)
93 PF10361 DUF2434: Protein of u 32.3 42 0.00091 37.2 3.3 62 792-855 87-148 (296)
94 PLN02292 ferric-chelate reduct 32.3 63 0.0014 40.5 5.3 24 790-813 204-227 (702)
95 PLN02631 ferric-chelate reduct 30.1 86 0.0019 39.3 6.0 25 790-814 187-211 (699)
96 PF05915 DUF872: Eukaryotic pr 29.1 85 0.0018 30.3 4.5 26 793-818 41-66 (115)
97 PF00868 Transglut_N: Transglu 28.9 53 0.0011 31.7 3.1 22 410-431 21-42 (118)
98 PF10856 DUF2678: Protein of u 28.5 1.9E+02 0.004 28.1 6.5 52 720-772 29-80 (118)
99 PF15102 TMEM154: TMEM154 prot 28.1 27 0.00058 35.0 0.9 14 889-902 117-130 (146)
100 PF13703 PepSY_TM_2: PepSY-ass 27.6 95 0.0021 28.1 4.4 30 786-816 56-85 (88)
101 PF08733 PalH: PalH/RIM21; In 26.0 2.3E+02 0.005 32.5 8.1 43 722-764 163-206 (348)
102 PRK10639 formate dehydrogenase 25.0 1.1E+02 0.0023 32.5 4.9 29 789-817 105-133 (211)
103 COG4329 Predicted membrane pro 24.9 1.3E+02 0.0028 29.7 4.9 84 725-808 64-149 (160)
104 TIGR01191 ccmC heme exporter p 24.6 1.9E+02 0.0042 30.2 6.6 27 717-743 11-37 (184)
105 KOG4671 Brain cell membrane pr 24.3 82 0.0018 32.8 3.6 62 718-779 79-140 (201)
106 TIGR03154 sulfolob_CbsA cytoch 23.9 4.1E+02 0.0089 30.4 9.1 40 284-323 348-389 (465)
107 PF14800 DUF4481: Domain of un 23.6 1.3E+02 0.0028 33.7 5.1 85 792-882 63-156 (308)
108 PF12794 MscS_TM: Mechanosensi 22.8 1.1E+02 0.0023 35.1 4.6 65 697-765 103-167 (340)
109 TIGR03096 nitroso_cyanin nitro 22.8 2.2E+02 0.0047 28.4 6.1 60 414-493 61-122 (135)
110 PRK10171 hydrogenase 1 b-type 22.8 2E+02 0.0044 30.9 6.6 18 801-818 135-152 (235)
111 PF06679 DUF1180: Protein of u 22.5 74 0.0016 32.6 2.9 40 833-872 98-137 (163)
112 PF06341 DUF1056: Protein of u 21.5 1.9E+02 0.0041 25.1 4.6 31 788-818 4-34 (63)
113 PRK05419 putative sulfite oxid 21.3 67 0.0015 34.1 2.4 89 717-814 72-168 (205)
114 PF13789 DUF4181: Domain of un 20.1 2.1E+02 0.0046 27.2 5.3 60 789-853 25-84 (110)
No 1
>KOG4731 consensus Protein predicted to be involved in spindle matrix formation, contains DM13, DoH, and DOMON domains [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.7e-72 Score=611.36 Aligned_cols=498 Identities=47% Similarity=0.703 Sum_probs=431.1
Q ss_pred CccCCCCeehhHHHHHHHhhccCCCCcccCCCCCCcee-eeccccccccceeeeEEEEeCceEEEcccccC-CCCceEEE
Q 048731 2 LRRIKPPILLLLVLLCFLTLSCSADPVKKCNKTSPYTG-REYELSMVQHQLRGVVSVIDDCSFRVSQFEML-SGSDVHWW 79 (904)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g-~~g~l~~~~h~v~g~v~i~d~~t~~i~~F~yd-~g~d~~fw 79 (904)
|.++.|+||+|++||+||.+. +..-....||+| ++|||++++|||||.|++||+|||+|.||+|+ .+||+|||
T Consensus 1 mc~k~~~~l~l~~ll~f~icy-----a~~~~~aepy~G~~lGels~lehqVsG~Vf~Vns~t~qI~nF~~~~~~~d~~fw 75 (512)
T KOG4731|consen 1 MCDKLPNLLLLLVLLIFLICY-----ANGEEAAEPYYGVYLGELSSLEHQVSGDVFAVNSTTFQIVNFNYDGGPPDVFFW 75 (512)
T ss_pred CccchhhHHHHHHHHHHHhhh-----cccccccccccceeeeeccccccccceeEEEEeeeEEEEEEeccCCCCCceEEE
Confidence 468899999999999999832 222222237888 99999999999999999999999999999999 67999999
Q ss_pred eecCCCCCCCCCCeE-ecCC-----cccccccCcEEEEEcCCCCceeccCEEEEEccccccCceeEEeCCCCCCCCCcCC
Q 048731 80 GANATDFDNITSGFI-VSDH-----SLNETYKNATFTVLLLENITWEQIPVLSIWDSFTASDFGHMVLNGSDSGITLSSG 153 (904)
Q Consensus 80 ~g~~~~p~~~~~G~~-v~~~-----~l~~~y~~~~i~l~Lp~~~t~~di~~~svwc~~~~~~FG~V~ip~~~~~P~~~~~ 153 (904)
+|.+.+|+ +.|.+ .++| .++++|+|++++|+||+++||++|+|+||||.+++.|||||.||++++.|+++..
T Consensus 76 ~~~sn~ps--n~gi~~~~~e~G~t~~l~~~~~N~~~~v~lp~~~t~de~kw~sv~~l~ta~nfg~Vv~pee~d~P~~es~ 153 (512)
T KOG4731|consen 76 GGMSNRPS--NEGIRHNDDEYGSTQSLNRTYKNKDFTVRLPENKTIDEIKWFSVWDLPTASNFGDVVIPEESDTPKAESP 153 (512)
T ss_pred eccCCCCC--CccccccccccccccccceecccccEEEEcCCCceeeheeeEEEEEccCCCcccceeccCCCCCccccCC
Confidence 99999998 88844 4554 4689999999999999999999999999999999999999999999999977531
Q ss_pred CCC-----CCCCCCcccCCCCcccccccccCccEEEEEeeecCCCeEEEEEEEEecCCCeEEEEecCCCCCCCCccCccE
Q 048731 154 LAP-----SPTPSSTRVLGAPTMFDNCKVLSKEFRIRWTLYADENSIEIGLEAATGTQNYMAFGWANPNATSGFMLGADV 228 (904)
Q Consensus 154 ~~~-----~~~~~~~~~~~~~~~~~nc~~L~~~~~l~W~v~~~~~~I~i~L~~~~~~~~y~afG~S~p~~~~~~M~gaDv 228 (904)
.+- .-.+.+.-+-.++|++-+|..++.+++.+|-..+ ....+-.++-.....+|||++..++...-.|.++|.
T Consensus 154 ~~~s~~~~~v~SdnieviDarTlki~~Fsy~g~~~~~~y~~A--G~G~~~s~~s~kk~ai~~~~~~~~~~~sl~~~n~k~ 231 (512)
T KOG4731|consen 154 PSFSNGVYGVSSDNIEVIDARTLKIPCFSYDGKYRPRWYFNA--GRGDIPSSASGKKLAIMAFDDEKGYETSLRMYNAKD 231 (512)
T ss_pred cccccCccccccCCeeEeccceeeeccccccCccCCceEEec--cccCcccccccceeeeecccccccCCchhHhhccce
Confidence 111 0011222234789999999999999999999882 333344444444458999999987788899999999
Q ss_pred EEEEEecCCceEEEEeeecCCcccccCCCCCCCcCCCccccCCCCCCcccceEEEEEEEeCCEEEEEEEecCCCCCCCCC
Q 048731 229 AMTGFKQEGLPFVDDFYITKYSECVNKDGSYSGVCPDAIYEGSDSGGLVNNTRLVYGHRRDGVSFIRYKRPLVSSDKKYD 308 (904)
Q Consensus 229 vV~~vd~~g~~~~~Dyy~~~~~~c~~~~g~~~g~cpD~~~~g~~~~g~~nd~~l~~g~~~~G~t~i~f~R~L~t~D~~~D 308 (904)
+|-..++++. ++.+.||+-+..|..++.+.-++|+|+-+.-.++.+..-+...+++++.+|+..+ +|+- |.+.|
T Consensus 232 Ivl~Lped~t-IfDI~wIsV~c~ky~~dfGhv~v~~d~n~e~~~~~v~si~~sk~~~~qi~~~~~v----~l~d-~~~r~ 305 (512)
T KOG4731|consen 232 IVLELPEDGT-IFDIDWISVYCVKYVVDFGHVLVPPDLNVEPSPPYVPSINNSKVNGSQIDGVSQV----PLND-DNKRD 305 (512)
T ss_pred EEEECCCCCc-EEeeceEEEEEEEEeeccceeecCCccccCcCCCccCcccccccccccccchhee----eccC-ccccc
Confidence 9999998766 8899999999999877777789999998876665544333444899999998877 6665 44467
Q ss_pred eeecCCCcEEEEEEeCCCCCCCCCCCccccCCCCCCCccccceeEeeccCCCCcCCCCCCCCCccccceeeecccceeEE
Q 048731 309 FSVNYTENMQVVWALGLLKPPDTLTPYYLPQNHGEPESVTYGHLVLNVSEHVNDCLGPLDAEDKEDQDLIIADANVPLVV 388 (904)
Q Consensus 309 ~~i~~~~~~~vIwA~G~~~~~~~~~~~y~~~~h~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (904)
.++.-.+...+||+.|-..++ ++|+|.+|+.....++++..+|++.++..|.+++++..+.++..++++...+..+
T Consensus 306 n~v~~~~~~~~i~nl~~~~~~----~~~~~v~~~~~~~e~~~~~~~n~~~~~~~~~p~l~~~~~~d~dv~~~~a~l~~~~ 381 (512)
T KOG4731|consen 306 NPVNSTESLTVIWNLGVIKPP----PYYLPVNHGGVESENFGHFSLNLSDHVDECLPPLDADNKYDQDVIIADAHLPLVV 381 (512)
T ss_pred ccceecCCceeeeccCcccCC----CcccccccCCceecccceeEEEccccccccCCccccccccCcceeeeccccCccc
Confidence 777777888999999887654 7899999998888899999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCCCCceeEEEcCccCceeEEEeCceEEEEEEecCCcceEEeecCCCCccccccceeeEecCCcCCCCCCC
Q 048731 389 VTGEALHYPNPPNPVKVFYINKKEAPVLRVERGVPVKFSIQAGHDVALYITSDILGGNASLRNVTETIYAGGPEAEGVKA 468 (904)
Q Consensus 389 ~~gp~~~y~~~p~~~~~wyiN~~~~p~~~~~rg~ty~f~v~~g~~~p~~it~~~~GG~~~~~~~~~~~~ag~~~~~g~~~ 468 (904)
+.+|..||||||+++++||||++++|+++|+||.||+|.++||||+-+||++++.||.+.+++..+++|+|+-..+|+.+
T Consensus 382 ~~r~~~h~pn~~~s~~~~yin~~~~p~l~~~rg~ty~f~~~~g~dvhs~~~~~~l~~~~~l~~~~~~~~~~gq~~~~Vl~ 461 (512)
T KOG4731|consen 382 TARPSVHYPNPPNSSKVLYINKKEAPVLKVERGVTYKFSIEAGHDVHSYITSDFLGGNASLRNRTETIYAGGQETHGVLS 461 (512)
T ss_pred cccccccCCCCCCCCcceeeeeccChhhhhccCCcEEEeccCCCCcccccccCcccCccccccCccccccCCcceEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCCCCCceeeeeeeccccceEEEeecCCCCCcccCccccCC
Q 048731 469 SPMELVWAPDRNTPDEVYYQSLYDQKMGWRIQVVDGGLSDMYNNSVVLDD 518 (904)
Q Consensus 469 ~~~~~~~~~~~~~pd~~yy~~~~~~~~g~~i~vv~~g~sd~y~~c~~Ld~ 518 (904)
.|-.+.|.|+..|||.+||++.+.++||||++++++++++||++.+.+++
T Consensus 462 ~pe~~~~~~~~pt~~~~~~~s~~~~~~~~kv~~~~~tl~~~~~~~vt~~~ 511 (512)
T KOG4731|consen 462 SPEELVWAPNRPTPDQLYYHSIFQEKMGWKVQVVDGTLSDMYNNSVTLDD 511 (512)
T ss_pred ChHHhhcCCCCCCcccchhhhhhhhhhCceeccccchHHHHHhhheeeec
Confidence 99999999999999999999999999999999999999999999887764
No 2
>smart00686 DM13 Domain present in fly proteins (CG14681, CG12492, CG6217), worm H06A10.1 and Arabidopsis thaliana MBG8.9.
Probab=100.00 E-value=9.4e-34 Score=264.07 Aligned_cols=102 Identities=27% Similarity=0.416 Sum_probs=96.4
Q ss_pred ccccceeee-EEEEeCceEEEcccccC-CCCceEEEeecCCCCCCCCCCeEecCCc----ccccccCcEEEEEcCCCCce
Q 048731 46 MVQHQLRGV-VSVIDDCSFRVSQFEML-SGSDVHWWGANATDFDNITSGFIVSDHS----LNETYKNATFTVLLLENITW 119 (904)
Q Consensus 46 ~~~h~v~g~-v~i~d~~t~~i~~F~yd-~g~d~~fw~g~~~~p~~~~~G~~v~~~~----l~~~y~~~~i~l~Lp~~~t~ 119 (904)
|++|||+|. |+|+|+|||+|+||+|| +|||||||+|++++|++.. |+++|+|+ ++++|+||+|+|+||+++||
T Consensus 1 ~~~h~v~g~~V~i~d~~Tl~I~~FsydG~~pD~yF~~g~~~~p~~~~-G~~v~de~g~~~~l~~y~~e~ivl~LP~~~ti 79 (108)
T smart00686 1 SLQHGVSSDPVEIVDAKTLRIPNFSYDGSGPDAYFWVGAGSRPDNEG-GKKVPDEYGYCNPLRRYHNEDIVLRLPESLTI 79 (108)
T ss_pred CCcccccceeEEEEeCCEEEEcceeccCCCCcEEEEeccCCCCCCcC-CeEcCCccCCcccccceeCCEEEEECCCCCeE
Confidence 579999977 99999999999999999 8999999999999998322 99999985 77999999999999999999
Q ss_pred eccCEEEEEccccccCceeEEeCCCCCCC
Q 048731 120 EQIPVLSIWDSFTASDFGHMVLNGSDSGI 148 (904)
Q Consensus 120 ~di~~~svwc~~~~~~FG~V~ip~~~~~P 148 (904)
+||+||||||+++++|||||.||+++++|
T Consensus 80 ~di~w~SV~~~~~~~nFG~V~ip~~~~~p 108 (108)
T smart00686 80 DDIKWFSVWCLKTAHNFGHVLFPENLNIP 108 (108)
T ss_pred ecCCEEEEEccccCCcceeEEccCCCCCC
Confidence 99999999999999999999999999988
No 3
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.93 E-value=4.3e-27 Score=242.84 Aligned_cols=157 Identities=31% Similarity=0.545 Sum_probs=136.3
Q ss_pred cccceeehhHHHHHHHHhhccceEEEEEeecccCCcccEEeeehhhhhHHHHHHHHHHhhhhhh--CCCccccccchhhh
Q 048731 681 LRPVLAVHGFMMFLAWGILLPGGILAARYLKHVKGDGWYQIHVYLQYSGLAIVLLALLFAVAEL--RGFYVSSLHVKFGI 758 (904)
Q Consensus 681 ~~~l~~~HG~LM~iAw~iL~P~Gil~aR~~k~~~~~~Wf~iH~~lq~~a~~l~iiG~vl~~~~~--~g~~~~~~H~~iGi 758 (904)
.+.++++||++|++||++++|+|++++||++. .++.||++|+.+|+++++++++|+++++... +..++++.|+++|+
T Consensus 32 ~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~~-~~~~~~~~H~~~q~~~~~~~i~g~~~~~~~~~~~~~~~~~~H~~lGl 110 (191)
T cd08760 32 SDTLIKAHGVLMAIAWGILMPIGALLARYFLL-GDPVWFYLHAGLQLLAVLLAIAGFVLGIVLVQGGGGSLNNAHAILGI 110 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCcchhhhH
Confidence 45689999999999999999999999999743 3678999999999999999999999999874 44578999999999
Q ss_pred HHhHHhhccceeEEEecCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhcccccCCCcchhhhhHHHHHHH
Q 048731 759 TATVLACVQPLNAFVRPKKPANGEEISSKRLIWEYLHFIVGRFAIIAGIVALFTGMKHLGERYGSENVHGLIWALIVWFL 838 (904)
Q Consensus 759 ~v~~L~~lQ~l~G~~rp~~~~~g~~~~~~R~~~~~~H~~lG~~~~iLgivni~lGl~l~~~~~~~~~~~g~~~~~i~wv~ 838 (904)
++++++++|+++|++||.+.. +.|++|+++|+++|+++++||++|+++|+.+.+.+. .....+++.+|+.
T Consensus 111 ~~~~l~~lQ~~~G~~~~~~~~------~~R~~~~~~H~~~G~~~~~l~~v~i~~G~~~~~~~~----~~~~~~~~~~~~~ 180 (191)
T cd08760 111 IVLALAILQPLLGLLRPHPGS------KKRSIWNWAHRWLGRAALILAIVNIFLGLDLAGAGT----PKAWKIAYGVVVA 180 (191)
T ss_pred HHHHHHHHHHHHHHhcCCCCC------CcccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----ccchhhHHHHHHH
Confidence 999999999999999998876 578899999999999999999999999999987653 2334566777776
Q ss_pred HHHhhhheee
Q 048731 839 IVALIVVYLE 848 (904)
Q Consensus 839 ~~~~~~~~Le 848 (904)
+.+++.+++|
T Consensus 181 ~~~~~~~~l~ 190 (191)
T cd08760 181 VLALVYLILE 190 (191)
T ss_pred HHHHHHHHHc
Confidence 6666666665
No 4
>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms]
Probab=99.87 E-value=3.1e-23 Score=236.28 Aligned_cols=282 Identities=26% Similarity=0.424 Sum_probs=211.5
Q ss_pred ccCccccCCccEEEEEEEeCCCceEEEEEEECCCccEEEEEeCC---CCCCccEEEEEEcC-CCcEEEEEEeecCCCCCc
Q 048731 510 YNNSVVLDDQQVTFFWTLSKDKESISFAARGEKKSGYLAIGFGS---GMVNSYAYVGWIDD-IGKGHVNTYWIDSMDASG 585 (904)
Q Consensus 510 y~~c~~Ld~~~~~l~Wt~~~~~~sI~f~lsg~s~~GWVAiGfs~---~M~gSdavIg~~d~-dG~v~V~~~~~~G~s~p~ 585 (904)
+.+|++|+.++..+++++..++..+++.+.++....|+++++++ +|.++.++++|... +|...+..+++.+... .
T Consensus 36 ~~~c~~lp~~~~~i~~~~~~~~~~~~i~~~~~~~~~w~~~~~~p~~t~m~~~~~~va~~~~~~g~~~~~t~~~~~~~~-s 114 (403)
T KOG4293|consen 36 FDSCVDLPTLNSFIHYTYNSANGVLSIAFSAPLSSAWVAWAINPTGTGMVGSRALVAYAGSSSGATTVKTYVILGYSP-S 114 (403)
T ss_pred ccccccCCCCCceEEEEEecCCCeEEEEEecCCcccccccccCCccccccccceeeeeeccccchhhceeeeecccch-h
Confidence 67999999999999999999889999999998555699999986 49999999999875 5777888888777663 2
Q ss_pred cCCCc--cceeeeee--eeeC---cEEEEEEEccCCCCCCCCCCCCCCcccccCCCCCeEEEEEecCCCC-CCCCcccee
Q 048731 586 VHPTV--ENMTYVRC--KSEN---GFITLEFTRPLKPSCNHSHRNSPKCKNIIDPTTPLKVIWAMGSSWT-DGHLTERNM 657 (904)
Q Consensus 586 v~pts--~~l~~~~~--~~~d---G~~t~~FtR~l~~~~~~~~~~~~~~~~~~d~~~~~~iIwA~G~~~~-~~~l~~~~~ 657 (904)
..+.. -++..++. ...+ ..+.+.|.-+. .....+..+|+.|.... +..+ .+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~l~~------------------~~~~~~~~~w~~~~~~~~g~~~---~~ 173 (403)
T KOG4293|consen 115 LVPALLSFTLGNVRAECNLRSSSPIGIFASFKLAG------------------ANGGKYSAVWQVGPTGSGGGRP---KR 173 (403)
T ss_pred hcccccceeeecCcchhhccCCCCceEEEEEEeec------------------CCCceeEEEEEccCCccCCCCC---cc
Confidence 22221 12222222 1223 44555554432 11356899999998764 2333 35
Q ss_pred ecccCCC---cEEEEeec--Ccccc------ccCcccceeehhHHHHHHHHhhccceEEEEEeecccC--CcccEEeeeh
Q 048731 658 HFVKSQR---PVRVLLLR--GSAEA------EQDLRPVLAVHGFMMFLAWGILLPGGILAARYLKHVK--GDGWYQIHVY 724 (904)
Q Consensus 658 H~~~s~g---~~~idl~~--Gs~~a------~~~~~~l~~~HG~LM~iAw~iL~P~Gil~aR~~k~~~--~~~Wf~iH~~ 724 (904)
|...... ...+++.. |.... ......+...||++|.++|++|+|+|++.+||+|..+ .+.||++|+.
T Consensus 174 h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~hgil~~~sw~il~p~g~i~ary~~~~~~~~~~Wfy~H~~ 253 (403)
T KOG4293|consen 174 HKLSGSNLASVTSLDLTSDIGELSITSEGNFNSSGLKLRMTHGILNALSWGILFPAGAIIARYLRQKPSGDPTWFYIHRA 253 (403)
T ss_pred CccccCCccceeecccccccccccccccCcccCcchhccccHHHHhhhhhheeccccceeEEEecccCCCCcchhhhhhh
Confidence 6543221 11222222 22111 1122234455999999999999999999999999852 6799999999
Q ss_pred hhhhHHHHHHHHHHhhhhhhCC--CccccccchhhhHHhHHhhccceeEEEecCCCCCCccccccccchhhHHHHHHHHH
Q 048731 725 LQYSGLAIVLLALLFAVAELRG--FYVSSLHVKFGITATVLACVQPLNAFVRPKKPANGEEISSKRLIWEYLHFIVGRFA 802 (904)
Q Consensus 725 lq~~a~~l~iiG~vl~~~~~~g--~~~~~~H~~iGi~v~~L~~lQ~l~G~~rp~~~~~g~~~~~~R~~~~~~H~~lG~~~ 802 (904)
+|..++++.+.|++.+....+. ......|..+|+.+++|.++|++..++||.+.+ +.|++|||+|+..|+..
T Consensus 254 ~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~h~~~G~~~~~l~~lQ~~~~l~Rp~~~~------k~R~~~nwyH~~~g~~~ 327 (403)
T KOG4293|consen 254 CQFTGFILGVAGFVDGLKLSNESDGTVYSAHTDLGIILLVLAFLQPLALLLRPLPES------KIRRYWNWYHHLVGRLS 327 (403)
T ss_pred heeeEEEEEeeeeeeeEEEccCCCceeeeecccchhHHHHHHHHHHHHHHhcCCccc------CceeccceeeeecCcce
Confidence 9999988888998888765432 234689999999999999999999999999988 88999999999999999
Q ss_pred HHHHHHHHHHhhhhccc
Q 048731 803 IIAGIVALFTGMKHLGE 819 (904)
Q Consensus 803 ~iLgivni~lGl~l~~~ 819 (904)
+++|++|++.|+.+...
T Consensus 328 ~~~~~~~i~~~~~l~~~ 344 (403)
T KOG4293|consen 328 IILGIVNIFDGLELLYP 344 (403)
T ss_pred eeehhhHHhhhHhhhcC
Confidence 99999999999998754
No 5
>PF03351 DOMON: DOMON domain; InterPro: IPR005018 The DOMON domain is an 110-125 residue long domain which has been identified in the physiologically important enzyme dopamine beta-monooxygenase and in several other secreted and transmembrane proteins from both plants and animals. It has been named after DOpamine beta-MOnooxygenase N-terminal domain. The DOMON domain can be found in one to four copies and in association with other domains, such as the Cu-ascorbate dependent monooxygenase domain, the epidermal growth factor domain, the trypsin inhibitor-like domain (TIL), the SEA domain and the Reelin domain. The architectures of the DOMON domain proteins strongly suggest a function in extracellular adhesion []. The sequence conservation is predominantly centred around patches of hydrophobic residues. The secondary structure prediction of the DOMON domain points to an all-beta-strand fold with seven or eight core strands supported by a buried core of conserved hydrophobic residues. There is a chraracteristic motif with two small positions (Gly or Ser) corresponding to a conserved turn immediately C-terminal to strand three. It has been proposed that the DOMON domain might form a beta-sandwich structure, with the strands distributed into two beta sheets as is seen in many extracellular adhesion domains such as the immunoglobulin, fibronectin type III, cadherin and PKD domains [].
Probab=99.86 E-value=1e-20 Score=181.06 Aligned_cols=122 Identities=28% Similarity=0.563 Sum_probs=107.5
Q ss_pred CccEEEEEeeecCCCeEEEEEEEEecCCCeEEEEecCCCCCCCCccCccEEEEEEecCCceEEEEee-ecCCcccccCCC
Q 048731 179 SKEFRIRWTLYADENSIEIGLEAATGTQNYMAFGWANPNATSGFMLGADVAMTGFKQEGLPFVDDFY-ITKYSECVNKDG 257 (904)
Q Consensus 179 ~~~~~l~W~v~~~~~~I~i~L~~~~~~~~y~afG~S~p~~~~~~M~gaDvvV~~vd~~g~~~~~Dyy-~~~~~~c~~~~g 257 (904)
+++|.|+|+++.++++|+|+|+++..+.+|+|||||. + ++|.++||+++|++ +|++++.||| ..++..
T Consensus 2 ~~~~~l~w~~~~~~~~i~~~l~~~~~~~~w~aiGfs~-~---~~M~~~Dvv~~~~~-~~~~~v~d~~~~~~~~~------ 70 (124)
T PF03351_consen 2 DCNFSLSWTVDGDNNTIEFELTGPANTNGWVAIGFSD-D---GGMGGSDVVVCWVD-DGKVYVQDYYSTGGYGP------ 70 (124)
T ss_pred CceEEEEEEEECCCCEEEEEEEeccCCCCEEEEEEcc-c---cCCCCCcEEEEEEc-CCceeEEEeeccCcccc------
Confidence 3479999999988889999999887668999999983 3 78999999999999 4999999999 666543
Q ss_pred CCCCcCCCccccCCCCCCcccceEEEEEEEeCCEEEEEEEecCCCCCCCCCeeecCCCcEEEEEEeC
Q 048731 258 SYSGVCPDAIYEGSDSGGLVNNTRLVYGHRRDGVSFIRYKRPLVSSDKKYDFSVNYTENMQVVWALG 324 (904)
Q Consensus 258 ~~~g~cpD~~~~g~~~~g~~nd~~l~~g~~~~G~t~i~f~R~L~t~D~~~D~~i~~~~~~~vIwA~G 324 (904)
+++|+. +.||++++++.+++|.++++|+|||.++|+ +|+.|..+.++++|||+|
T Consensus 71 ----p~~d~~--------~~~~~~~~~~~~~~g~~~~~F~R~l~t~d~-~d~~l~~~~~~~~i~A~G 124 (124)
T PF03351_consen 71 ----PTVDDQ--------GSQDIQLLSGSYSNGTTTCSFTRPLNTGDS-QDYDLDSNGTYYVIWAYG 124 (124)
T ss_pred ----eeeccc--------cCCcEEEEEEEEECCEEEEEEEEEccCCCC-CccEecCCCcEEEEEEeC
Confidence 456752 148999999999999999999999999999 999998899999999998
No 6
>smart00664 DoH Possible catecholamine-binding domain present in a variety of eukaryotic proteins. A predominantly beta-sheet domain present as a regulatory N-terminal domain in dopamine beta-hydroxylase, mono-oxygenase X and SDR2. Its function remains unknown at present (Ponting, Human Molecular Genetics, in press).
Probab=99.86 E-value=1.3e-20 Score=186.35 Aligned_cols=124 Identities=31% Similarity=0.518 Sum_probs=105.4
Q ss_pred ccEEEEEeeecCCCeEEEEEEEEecCCCeEEEEecCCCCCCCCccCccEEEEEEecCCceEEEEeeecCCcccccCCCCC
Q 048731 180 KEFRIRWTLYADENSIEIGLEAATGTQNYMAFGWANPNATSGFMLGADVAMTGFKQEGLPFVDDFYITKYSECVNKDGSY 259 (904)
Q Consensus 180 ~~~~l~W~v~~~~~~I~i~L~~~~~~~~y~afG~S~p~~~~~~M~gaDvvV~~vd~~g~~~~~Dyy~~~~~~c~~~~g~~ 259 (904)
++|+|+|+++.+ ++|+|+|+++..+++|+||||| ++ ++|.|+|++|+|++++|++++.|||+++++.|.
T Consensus 2 ~~~~l~W~~~~~-~~v~~~l~~~~~~~gwvaiGfs-~~---~~M~~~d~vv~~~~~~g~~~v~d~~~~~~~~~~------ 70 (148)
T smart00664 2 CDYFLSWSVDGE-NSIAFELSGPTSTNGWVAIGFS-PD---GQMAGADVVVAWVDNNGRVTVKDYYTPGYGPPV------ 70 (148)
T ss_pred ceEEEEEEECCC-CeEEEEEEEecCCCCEEEEEEC-CC---CCcCCCCEEEEEEcCCCCEEEEEEEcCCCCCCC------
Confidence 479999999954 9999999998755899999998 44 999999999999997789999999999998653
Q ss_pred CCcCCCccccCCCCCCcccceEEE-EEEEeCCEEEEEEEecCCCCCCCCCeeecCCCcEEEEEEeCCCCCCC
Q 048731 260 SGVCPDAIYEGSDSGGLVNNTRLV-YGHRRDGVSFIRYKRPLVSSDKKYDFSVNYTENMQVVWALGLLKPPD 330 (904)
Q Consensus 260 ~g~cpD~~~~g~~~~g~~nd~~l~-~g~~~~G~t~i~f~R~L~t~D~~~D~~i~~~~~~~vIwA~G~~~~~~ 330 (904)
+|+.. |+... ++.++||+++++|+|||.++|+ .|..+. ++++++|||.|++.+.+
T Consensus 71 ----~d~~~----------~~~~~~~~~~~~g~~~~~f~R~l~t~d~-~d~~~~-~~~~~~i~a~G~~~~~~ 126 (148)
T smart00664 71 ----EDDQQ----------DVTDLLSATYENGVLTCRFRRKLGSNDP-DDKSLL-DGTVHVLWAKGPLSPNG 126 (148)
T ss_pred ----cCccc----------ccccceeEEEECCEEEEEEEEEccCCCc-cccccC-CCeEEEEEEECCCCCCC
Confidence 46643 33333 8999999999999999999999 799775 67899999999854433
No 7
>PF10517 DM13: Electron transfer DM13; InterPro: IPR019545 This domain of unknown function is present in proteins of Drosophila melanogaster, Caenorhabditis elegans and Arabidopsis thaliana. In some proteins it is found in either one or two copies, N-terminal to the DOMON domain. Proteins with the DM13 and DOMON domains include Skeletor, which is part of a macromolecular complex that forms the spindle matrix []. The DM13 domain is also a component of a novel electron-transfer system potentially involved in oxidative modification of animal cell-surface proteins []. It contains a nearly absolutely conserved cysteine, which could be involved in a redox reaction, either as a naked thiol group or through binding a prosthetic group like heme [].
Probab=99.85 E-value=1.3e-21 Score=184.26 Aligned_cols=96 Identities=26% Similarity=0.479 Sum_probs=85.2
Q ss_pred cccc---ccccceeeeEEEEeCceEEEcccccC--CCCceEEEeecCCCCCCCCCCeEecC-C-----cccccccCcEEE
Q 048731 42 YELS---MVQHQLRGVVSVIDDCSFRVSQFEML--SGSDVHWWGANATDFDNITSGFIVSD-H-----SLNETYKNATFT 110 (904)
Q Consensus 42 g~l~---~~~h~v~g~v~i~d~~t~~i~~F~yd--~g~d~~fw~g~~~~p~~~~~G~~v~~-~-----~l~~~y~~~~i~ 110 (904)
|+|+ +..|+++|+|+|+|+||++|.+|+|+ +|||+|||++++..|. +.+.+++. + +| ++| +++++
T Consensus 1 G~F~~~~~~~h~vsG~v~i~d~~t~~i~~f~f~~~~gPD~~~~l~~~~~~~--~~~~~~~~~~~~~~~~l-~~~-~~~~~ 76 (108)
T PF10517_consen 1 GTFSGQLSGGHGVSGTVTIVDGKTFLIFNFNFDGSQGPDLYFWLGKGPSPT--PDGFIIPSDEYVSLGPL-KSY-NGDQT 76 (108)
T ss_pred CeeEcccCCCceeeEEEEEeCCCeEEEecccccCCCCCCEEEEEECCCCCC--Ccccccccccceeeecc-ccc-CCCEE
Confidence 4455 45699999999999999999999999 4899999999997765 77777663 2 56 899 99999
Q ss_pred EEcCCCCceeccCEEEEEccccccCceeEEe
Q 048731 111 VLLLENITWEQIPVLSIWDSFTASDFGHMVL 141 (904)
Q Consensus 111 l~Lp~~~t~~di~~~svwc~~~~~~FG~V~i 141 (904)
++||++++++|++||+|||++|.++||||.|
T Consensus 77 ~~LP~~~~~~d~~~v~IwC~~f~~~FG~a~l 107 (108)
T PF10517_consen 77 YTLPAGVDLDDYKWVSIWCEKFSVNFGHAPL 107 (108)
T ss_pred EECCCCCCHHHCCEEEEEehhcCceeeEEEe
Confidence 9999999999999999999999999999987
No 8
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=99.85 E-value=7.1e-23 Score=198.56 Aligned_cols=125 Identities=34% Similarity=0.482 Sum_probs=111.7
Q ss_pred ehhHHHHHHHHhhccceEEEEEe-ecccCCcccEEeeehhhhhHHHHHHHHHHhhhhhhCC---CccccccchhhhHHhH
Q 048731 687 VHGFMMFLAWGILLPGGILAARY-LKHVKGDGWYQIHVYLQYSGLAIVLLALLFAVAELRG---FYVSSLHVKFGITATV 762 (904)
Q Consensus 687 ~HG~LM~iAw~iL~P~Gil~aR~-~k~~~~~~Wf~iH~~lq~~a~~l~iiG~vl~~~~~~g---~~~~~~H~~iGi~v~~ 762 (904)
+||++|++||++++|.|++++|+ .+..+++.|+++|+.+|+++++++++|+++++.+.+. .++.+.|+++|+++++
T Consensus 1 ~H~~lm~~~f~~l~p~gil~~r~~~~~~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~~~~~~~s~H~~lGl~~~~ 80 (129)
T smart00665 1 LHPVLMILGFGFLMGEAILVARPLTRFLSKPTWFLLHVVLQILALVLGVIGLLAIFISHNESGIANFYSLHSWLGLAAFV 80 (129)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCccchhHHHHHHHHH
Confidence 69999999999999999999997 5545578999999999999999999999999987543 4789999999999999
Q ss_pred HhhccceeEEEecCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHhh
Q 048731 763 LACVQPLNAFVRPKKPANGEEISSKRLIWEYLHFIVGRFAIIAGIVALFTGM 814 (904)
Q Consensus 763 L~~lQ~l~G~~rp~~~~~g~~~~~~R~~~~~~H~~lG~~~~iLgivni~lGl 814 (904)
+.++|+++|++++.+.. .+.+.|..|+++|+++|+++++||++|+++|+
T Consensus 81 l~~~Q~~~G~~~~~~~~---~~~~~r~~~~~~H~~~G~~~~~la~~~~~lG~ 129 (129)
T smart00665 81 LAGLQWLSGFLRPLPPG---LPSKYRSYLNPYHRFVGLAAFILAIVTIFLGL 129 (129)
T ss_pred HHHHHHHHHHHHhcCCc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 99999999999887652 12367899999999999999999999999985
No 9
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=99.81 E-value=5.8e-21 Score=186.57 Aligned_cols=127 Identities=29% Similarity=0.499 Sum_probs=110.7
Q ss_pred ehhHHHHHHHHhhccceEEEEEe--ecccCCcccEEeeehhhhhHHHHHHHHHHhhhhhhCC---CccccccchhhhHHh
Q 048731 687 VHGFMMFLAWGILLPGGILAARY--LKHVKGDGWYQIHVYLQYSGLAIVLLALLFAVAELRG---FYVSSLHVKFGITAT 761 (904)
Q Consensus 687 ~HG~LM~iAw~iL~P~Gil~aR~--~k~~~~~~Wf~iH~~lq~~a~~l~iiG~vl~~~~~~g---~~~~~~H~~iGi~v~ 761 (904)
+|++||++||++++|.|++++|+ .+..+++.|+++|+.+|+++++++++|+++++...+. .|+++.|+++|++++
T Consensus 1 ~H~~lm~~~f~~l~~~~il~~r~~~~~~~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~~~h~~s~H~~lG~~~~ 80 (137)
T PF03188_consen 1 WHPILMTIGFVFLMPEGILAARYNPFRRKSRKWWFRIHWILQVLALVFAIIGFVAIFINKNRNGKPHFKSWHSILGLATF 80 (137)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCchhhhhHHHH
Confidence 69999999999999999999997 3344578999999999999999999999999886542 578999999999999
Q ss_pred HHhhccceeEEEecCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q 048731 762 VLACVQPLNAFVRPKKPANGEEISSKRLIWEYLHFIVGRFAIIAGIVALFTGMKH 816 (904)
Q Consensus 762 ~L~~lQ~l~G~~rp~~~~~g~~~~~~R~~~~~~H~~lG~~~~iLgivni~lGl~l 816 (904)
+++++|+++|++++.... ...+.|+.++++|+++|++++++|++|+.+|+..
T Consensus 81 ~l~~~Q~~~G~~~~~~~~---~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~G~~~ 132 (137)
T PF03188_consen 81 VLALLQPLLGFFRFFMPG---LPRKRRPIWNKWHRWLGYLIYVLAIATIFLGLTE 132 (137)
T ss_pred HHHHHHHHHHHHHHccCC---CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998765322 1125678888889999999999999999999954
No 10
>KOG4731 consensus Protein predicted to be involved in spindle matrix formation, contains DM13, DoH, and DOMON domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=1.6e-19 Score=198.93 Aligned_cols=134 Identities=13% Similarity=0.068 Sum_probs=110.5
Q ss_pred eeeecccccccccee-eeEEEEeCceEEEcccccC--CCCceEEEeecCCCCCCCCC-CeE-----ecC----Ccccccc
Q 048731 38 TGREYELSMVQHQLR-GVVSVIDDCSFRVSQFEML--SGSDVHWWGANATDFDNITS-GFI-----VSD----HSLNETY 104 (904)
Q Consensus 38 ~g~~g~l~~~~h~v~-g~v~i~d~~t~~i~~F~yd--~g~d~~fw~g~~~~p~~~~~-G~~-----v~~----~~l~~~y 104 (904)
.-..++|+...|+++ ++|+|+|++||+|++|+|+ +.|+-||.+|.|++|+ .+ |.| +++ ++.++.|
T Consensus 150 ~es~~~~s~~~~~v~SdnieviDarTlki~~Fsy~g~~~~~~y~~AG~G~~~s--~~s~kk~ai~~~~~~~~~~~sl~~~ 227 (512)
T KOG4731|consen 150 AESPPSFSNGVYGVSSDNIEVIDARTLKIPCFSYDGKYRPRWYFNAGRGDIPS--SASGKKLAIMAFDDEKGYETSLRMY 227 (512)
T ss_pred ccCCcccccCccccccCCeeEeccceeeeccccccCccCCceEEeccccCccc--ccccceeeeecccccccCCchhHhh
Confidence 336788999999997 9999999999999999998 4556666669999998 44 443 344 3445999
Q ss_pred cCcEEEEEcCCCCceeccCEEEEEccccccCceeEEeCCCCCCCCCcCCCCCCCCCCCcccCCCCcccccccccCccEEE
Q 048731 105 KNATFTVLLLENITWEQIPVLSIWDSFTASDFGHMVLNGSDSGITLSSGLAPSPTPSSTRVLGAPTMFDNCKVLSKEFRI 184 (904)
Q Consensus 105 ~~~~i~l~Lp~~~t~~di~~~svwc~~~~~~FG~V~ip~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~nc~~L~~~~~l 184 (904)
++++|+|+||++.|++||+||||||+++.+|||||.+|.++++|+....++ ..+.+..||-++++..|+
T Consensus 228 n~k~Ivl~Lped~tIfDI~wIsV~c~ky~~dfGhv~v~~d~n~e~~~~~v~-----------si~~sk~~~~qi~~~~~v 296 (512)
T KOG4731|consen 228 NAKDIVLELPEDGTIFDIDWISVYCVKYVVDFGHVLVPPDLNVEPSPPYVP-----------SINNSKVNGSQIDGVSQV 296 (512)
T ss_pred ccceEEEECCCCCcEEeeceEEEEEEEEeeccceeecCCccccCcCCCccC-----------cccccccccccccchhee
Confidence 999999999999999999999999999999999999999999888854322 234445789999888777
No 11
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=99.78 E-value=2.1e-20 Score=181.64 Aligned_cols=127 Identities=21% Similarity=0.264 Sum_probs=111.6
Q ss_pred eeehhHHHHHHHHhhccceEEEEEeecccCCcccEEeeehhhhhHHHHHHHHHHhhhhhh--CC-CccccccchhhhHHh
Q 048731 685 LAVHGFMMFLAWGILLPGGILAARYLKHVKGDGWYQIHVYLQYSGLAIVLLALLFAVAEL--RG-FYVSSLHVKFGITAT 761 (904)
Q Consensus 685 ~~~HG~LM~iAw~iL~P~Gil~aR~~k~~~~~~Wf~iH~~lq~~a~~l~iiG~vl~~~~~--~g-~~~~~~H~~iGi~v~ 761 (904)
+++|+++|++||++++|.|++++|++|...++.|+++|+.+|+++++++++|+++++.+. ++ .++.+.|+++|++++
T Consensus 2 f~~H~~lm~~g~~~l~~~~il~~r~~~~~~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~~~~~h~~s~Hs~lGl~~~ 81 (131)
T cd08554 2 FNWHPLLMVIGFVFLMGEALLVYRVFRLLTKRALKLLHAILHLLAFVLGLVGLLAVFLFHNAGGIANLYSLHSWLGLATV 81 (131)
T ss_pred CCccHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHH
Confidence 579999999999999999999999998877788999999999999999999999999875 22 478999999999999
Q ss_pred HHhhccceeEEEecCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHhh
Q 048731 762 VLACVQPLNAFVRPKKPANGEEISSKRLIWEYLHFIVGRFAIIAGIVALFTGM 814 (904)
Q Consensus 762 ~L~~lQ~l~G~~rp~~~~~g~~~~~~R~~~~~~H~~lG~~~~iLgivni~lGl 814 (904)
+++++|++.|++++....+ ..+.|..++++|+++|+++++++++|+++|+
T Consensus 82 ~l~~~q~~~G~~~~~~~~~---~~~~r~~~~~~H~~~G~~~~~la~~t~~~G~ 131 (131)
T cd08554 82 LLFLLQFLSGFVLFLLPLL---RLSYRSSLLPFHRFFGLAIFVLAIATILLGI 131 (131)
T ss_pred HHHHHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999877533321 0125889999999999999999999999984
No 12
>PF03351 DOMON: DOMON domain; InterPro: IPR005018 The DOMON domain is an 110-125 residue long domain which has been identified in the physiologically important enzyme dopamine beta-monooxygenase and in several other secreted and transmembrane proteins from both plants and animals. It has been named after DOpamine beta-MOnooxygenase N-terminal domain. The DOMON domain can be found in one to four copies and in association with other domains, such as the Cu-ascorbate dependent monooxygenase domain, the epidermal growth factor domain, the trypsin inhibitor-like domain (TIL), the SEA domain and the Reelin domain. The architectures of the DOMON domain proteins strongly suggest a function in extracellular adhesion []. The sequence conservation is predominantly centred around patches of hydrophobic residues. The secondary structure prediction of the DOMON domain points to an all-beta-strand fold with seven or eight core strands supported by a buried core of conserved hydrophobic residues. There is a chraracteristic motif with two small positions (Gly or Ser) corresponding to a conserved turn immediately C-terminal to strand three. It has been proposed that the DOMON domain might form a beta-sandwich structure, with the strands distributed into two beta sheets as is seen in many extracellular adhesion domains such as the immunoglobulin, fibronectin type III, cadherin and PKD domains [].
Probab=99.77 E-value=1.2e-17 Score=159.96 Aligned_cols=119 Identities=31% Similarity=0.538 Sum_probs=103.2
Q ss_pred CCccEEEEEEEeCCCceEEEEEEECCC-ccEEEEEeCCC--CCCccEEEEEEcCCCcEEEEEEe-ecCCCCCccCC-Ccc
Q 048731 517 DDQQVTFFWTLSKDKESISFAARGEKK-SGYLAIGFGSG--MVNSYAYVGWIDDIGKGHVNTYW-IDSMDASGVHP-TVE 591 (904)
Q Consensus 517 d~~~~~l~Wt~~~~~~sI~f~lsg~s~-~GWVAiGfs~~--M~gSdavIg~~d~dG~v~V~~~~-~~G~s~p~v~p-ts~ 591 (904)
|+|++.++|++..++..|+|+++++.. .||+|||||.. |.++|+++||++ +|++.++++| ..++..|..++ .++
T Consensus 1 ~~~~~~l~w~~~~~~~~i~~~l~~~~~~~~w~aiGfs~~~~M~~~Dvv~~~~~-~~~~~v~d~~~~~~~~~p~~d~~~~~ 79 (124)
T PF03351_consen 1 DDCNFSLSWTVDGDNNTIEFELTGPANTNGWVAIGFSDDGGMGGSDVVVCWVD-DGKVYVQDYYSTGGYGPPTVDDQGSQ 79 (124)
T ss_pred CCceEEEEEEEECCCCEEEEEEEeccCCCCEEEEEEccccCCCCCcEEEEEEc-CCceeEEEeeccCcccceeeccccCC
Confidence 467999999999888899999998754 79999999984 999999999999 6999999999 88888887774 258
Q ss_pred ceeeeeeeeeCcEEEEEEEccCCCCCCCCCCCCCCcccccCCCCCeEEEEEec
Q 048731 592 NMTYVRCKSENGFITLEFTRPLKPSCNHSHRNSPKCKNIIDPTTPLKVIWAMG 644 (904)
Q Consensus 592 ~l~~~~~~~~dG~~t~~FtR~l~~~~~~~~~~~~~~~~~~d~~~~~~iIwA~G 644 (904)
++.++++.+++|.++|+|+||+.+.+. ....++.++++++|||+|
T Consensus 80 ~~~~~~~~~~~g~~~~~F~R~l~t~d~--------~d~~l~~~~~~~~i~A~G 124 (124)
T PF03351_consen 80 DIQLLSGSYSNGTTTCSFTRPLNTGDS--------QDYDLDSNGTYYVIWAYG 124 (124)
T ss_pred cEEEEEEEEECCEEEEEEEEEccCCCC--------CccEecCCCcEEEEEEeC
Confidence 999999999999999999999998441 244566789999999998
No 13
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.76 E-value=4.6e-19 Score=184.28 Aligned_cols=169 Identities=22% Similarity=0.328 Sum_probs=135.9
Q ss_pred cceeehhHHHHHHHHhhccceEEEEEeecccCCcccEEeeehhhhhHHHHHHHHHHhhhhhhC----C-Cccccccchhh
Q 048731 683 PVLAVHGFMMFLAWGILLPGGILAARYLKHVKGDGWYQIHVYLQYSGLAIVLLALLFAVAELR----G-FYVSSLHVKFG 757 (904)
Q Consensus 683 ~l~~~HG~LM~iAw~iL~P~Gil~aR~~k~~~~~~Wf~iH~~lq~~a~~l~iiG~vl~~~~~~----g-~~~~~~H~~iG 757 (904)
..+++|+++|++++.+++..|++++|.++..+++.+..+|+.+|.++++++++|+..++.+++ + .|+.|.|+|+|
T Consensus 22 ~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSwlG 101 (214)
T cd08764 22 LQFNWHPLLMVLGLIFLYGNSILVYRVFRNTRKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSWLG 101 (214)
T ss_pred ceEeecHHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHH
Confidence 479999999999999999999999999886555667779999999999999999988876542 2 37899999999
Q ss_pred hHHhHHhhccceeEE---EecCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhcc----cccCCCcchhhh
Q 048731 758 ITATVLACVQPLNAF---VRPKKPANGEEISSKRLIWEYLHFIVGRFAIIAGIVALFTGMKHLG----ERYGSENVHGLI 830 (904)
Q Consensus 758 i~v~~L~~lQ~l~G~---~rp~~~~~g~~~~~~R~~~~~~H~~lG~~~~iLgivni~lGl~l~~----~~~~~~~~~g~~ 830 (904)
+++++|..+|.+.|+ +.|.... ..|.....+|+++|+++++++++++.+|+.+.. ..|+....++..
T Consensus 102 l~t~~L~~lQ~~~Gf~~fl~P~~~~------~~r~~~~p~H~~~Gl~~fvLaiaT~~lGl~ek~~f~~~~~~~~~~e~~l 175 (214)
T cd08764 102 LTAVILFSLQWVGGFVSFLFPGLPE------TLRAAYLPLHVFFGLFIFVLAVATALLGITEKAFFSLNKYSNLPAEGVL 175 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccch------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCChhHHH
Confidence 999999999999996 4565432 356666668999999999999999999997631 235555567777
Q ss_pred hHHHHHH-HHHHhhhheeehhhhhhhhc
Q 048731 831 WALIVWF-LIVALIVVYLEFREKQRRRE 857 (904)
Q Consensus 831 ~~~i~wv-~~~~~~~~~Le~~~~~~r~~ 857 (904)
.++++-+ +.+.++++++.....|||.+
T Consensus 176 ~N~~gl~~~~fg~~V~~~~~~~~~kr~~ 203 (214)
T cd08764 176 GNFIGIVLVIFGGLVVYLVTEPDYKRIE 203 (214)
T ss_pred HHHHHHHHHHHHHHHHHhccCcccCCCC
Confidence 7776654 55566677778887777643
No 14
>smart00664 DoH Possible catecholamine-binding domain present in a variety of eukaryotic proteins. A predominantly beta-sheet domain present as a regulatory N-terminal domain in dopamine beta-hydroxylase, mono-oxygenase X and SDR2. Its function remains unknown at present (Ponting, Human Molecular Genetics, in press).
Probab=99.75 E-value=5e-17 Score=160.79 Aligned_cols=139 Identities=24% Similarity=0.431 Sum_probs=108.1
Q ss_pred ccEEEEEEEeCCCceEEEEEEECC-CccEEEEEeCC--CCCCccEEEEEEcCCCcEEEEEEeecCCCCCccCCCccceee
Q 048731 519 QQVTFFWTLSKDKESISFAARGEK-KSGYLAIGFGS--GMVNSYAYVGWIDDIGKGHVNTYWIDSMDASGVHPTVENMTY 595 (904)
Q Consensus 519 ~~~~l~Wt~~~~~~sI~f~lsg~s-~~GWVAiGfs~--~M~gSdavIg~~d~dG~v~V~~~~~~G~s~p~v~pts~~l~~ 595 (904)
|++.++|+++.+ +.|+|+++++. +.||+|||||+ +|.|+|+++||++++|++.+.++|+.|+..|..+ .++++..
T Consensus 2 ~~~~l~W~~~~~-~~v~~~l~~~~~~~gwvaiGfs~~~~M~~~d~vv~~~~~~g~~~v~d~~~~~~~~~~~d-~~~~~~~ 79 (148)
T smart00664 2 CDYFLSWSVDGE-NSIAFELSGPTSTNGWVAIGFSPDGQMAGADVVVAWVDNNGRVTVKDYYTPGYGPPVED-DQQDVTD 79 (148)
T ss_pred ceEEEEEEECCC-CeEEEEEEEecCCCCEEEEEECCCCCcCCCCEEEEEEcCCCCEEEEEEEcCCCCCCCcC-ccccccc
Confidence 689999999986 69999999974 27999999997 4999999999999779999999999999877644 5666765
Q ss_pred e-eeeeeCcEEEEEEEccCCCCCCCCCCCCCCcccccCCCCCeEEEEEecCCCCCCCCccceeecccCCCcEEEEee
Q 048731 596 V-RCKSENGFITLEFTRPLKPSCNHSHRNSPKCKNIIDPTTPLKVIWAMGSSWTDGHLTERNMHFVKSQRPVRVLLL 671 (904)
Q Consensus 596 ~-~~~~~dG~~t~~FtR~l~~~~~~~~~~~~~~~~~~d~~~~~~iIwA~G~~~~~~~l~~~~~H~~~s~g~~~idl~ 671 (904)
. ++.+++|.++|+|+|++.+.+. .+....+++++++||.|+....+.+ .+|.........+++.
T Consensus 80 ~~~~~~~~g~~~~~f~R~l~t~d~---------~d~~~~~~~~~~i~a~G~~~~~~~~---~~H~~~~~~~~~i~~~ 144 (148)
T smart00664 80 LLSATYENGVLTCRFRRKLGSNDP---------DDKSLLDGTVHVLWAKGPLSPNGGL---GYHDFSLKSTKKVCLS 144 (148)
T ss_pred ceeEEEECCEEEEEEEEEccCCCc---------cccccCCCeEEEEEEECCCCCCCCe---eeccccccCceEEEec
Confidence 5 8899999999999999998551 2334456789999999983333334 4676531223445544
No 15
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.73 E-value=1.1e-18 Score=179.35 Aligned_cols=134 Identities=19% Similarity=0.241 Sum_probs=111.1
Q ss_pred ccceeehhHHHHHHHHhhccceEEEEEeecc---cCCcccEEeeehhhhhHHHHHHHHHHhhhhhhC---CCccccccch
Q 048731 682 RPVLAVHGFMMFLAWGILLPGGILAARYLKH---VKGDGWYQIHVYLQYSGLAIVLLALLFAVAELR---GFYVSSLHVK 755 (904)
Q Consensus 682 ~~l~~~HG~LM~iAw~iL~P~Gil~aR~~k~---~~~~~Wf~iH~~lq~~a~~l~iiG~vl~~~~~~---g~~~~~~H~~ 755 (904)
..++++|+++|++||++++|.|++..|.... ..++.|+++|+.+|.++++++++|+++++.+.+ ..|+++.|++
T Consensus 18 ~~~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~~~~~~~~hf~s~H~~ 97 (183)
T cd08761 18 TSLFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYNKERNGKPHFTSWHGI 97 (183)
T ss_pred cceeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHH
Confidence 4589999999999999999999997663322 246788999999999999999999998887643 3579999999
Q ss_pred hhhHHhHHhhccceeEEEecCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q 048731 756 FGITATVLACVQPLNAFVRPKKPANGEEISSKRLIWEYLHFIVGRFAIIAGIVALFTGMKH 816 (904)
Q Consensus 756 iGi~v~~L~~lQ~l~G~~rp~~~~~g~~~~~~R~~~~~~H~~lG~~~~iLgivni~lGl~l 816 (904)
+|+++++++++|++.|++++...... ...++|+.++++|+++|++++++|++|+.+|+..
T Consensus 98 lGl~~~~l~~~Q~~~G~~~~~~~~~~-~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~ 157 (183)
T cd08761 98 LGLVTVILIVLQALGGLALLYPPGLR-RGESKAKKLKKYHRLSGYVAYLLGLATLVLGLET 157 (183)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhHHHh-cccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999998644322100 0014678899999999999999999999999987
No 16
>PLN02351 cytochromes b561 family protein
Probab=99.73 E-value=2.2e-18 Score=180.23 Aligned_cols=165 Identities=18% Similarity=0.192 Sum_probs=132.0
Q ss_pred ce-eehhHHHHHHHHhhccceEEEEEeecccCCcccEEeeehhhhhHHHHHHHHHHhhhhhhCC--CccccccchhhhHH
Q 048731 684 VL-AVHGFMMFLAWGILLPGGILAARYLKHVKGDGWYQIHVYLQYSGLAIVLLALLFAVAELRG--FYVSSLHVKFGITA 760 (904)
Q Consensus 684 l~-~~HG~LM~iAw~iL~P~Gil~aR~~k~~~~~~Wf~iH~~lq~~a~~l~iiG~vl~~~~~~g--~~~~~~H~~iGi~v 760 (904)
.+ ++|++||++++.+|++.||+++|.+|.. ++.|+.+|+.+|.++++++++|+...+...++ .++++.|+|+|+++
T Consensus 49 iffn~HP~lMviGfi~L~geAILvYR~~~~~-~k~~K~lH~~Lh~~Ali~~vvGl~a~fh~~~~~i~nlySLHSWlGl~t 127 (242)
T PLN02351 49 VYAVLHPLLMVIGFILISGEAILVHRWLPGS-RKTKKSVHLWLQGLALASGVFGIWTKFHGQDGIVANFYSLHSWMGLIC 127 (242)
T ss_pred eeecccHHHHHHHHHHHHHHHHHHhhccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHH
Confidence 45 7999999999999999999999998753 45689999999999999999999985544443 46899999999999
Q ss_pred hHHhhccceeEEE---ecCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhc------ccccCCCcchhhhh
Q 048731 761 TVLACVQPLNAFV---RPKKPANGEEISSKRLIWEYLHFIVGRFAIIAGIVALFTGMKHL------GERYGSENVHGLIW 831 (904)
Q Consensus 761 ~~L~~lQ~l~G~~---rp~~~~~g~~~~~~R~~~~~~H~~lG~~~~iLgivni~lGl~l~------~~~~~~~~~~g~~~ 831 (904)
+++..+|.+.|++ .|.... ..|.....+|..+|+++++|+++++.+|+.+. ...|+....++.+.
T Consensus 128 v~Lf~lQwv~Gf~~F~~P~~~~------~~Ra~~~P~Hv~~Gl~if~LaiaTa~lGl~EKl~F~~~~~~y~~~~~Ea~lv 201 (242)
T PLN02351 128 VSLFGAQWLTGFMSFWHRGEMR------TTRTTVLPWHVFLGLYTYGLAVATAETGLLEKLTFLQTKRNVSKHGSESMVV 201 (242)
T ss_pred HHHHHHHHHHHHHHHhcCCCch------hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccCCchhhhH
Confidence 9999999999963 444332 45777788999999999999999999998763 23465555677777
Q ss_pred HHHHHH-HHHHhhhheeehhhhhhh
Q 048731 832 ALIVWF-LIVALIVVYLEFREKQRR 855 (904)
Q Consensus 832 ~~i~wv-~~~~~~~~~Le~~~~~~r 855 (904)
+.++-+ +.+.+++++......|||
T Consensus 202 N~~Glliv~fG~~Vv~~~~~p~~kr 226 (242)
T PLN02351 202 NGLGLGLALLSGIVILAAVLPKYQS 226 (242)
T ss_pred HHHHHHHHHHHHHHHHhhcCccccC
Confidence 776655 344456667777777665
No 17
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.70 E-value=3.8e-18 Score=167.75 Aligned_cols=130 Identities=21% Similarity=0.185 Sum_probs=112.1
Q ss_pred cccceeehhHHHHHHHHhhccceEEEEEeecccCCcccEEeeehhhhhHHHHHHHHHHhhhhhhCC---Cccccccchhh
Q 048731 681 LRPVLAVHGFMMFLAWGILLPGGILAARYLKHVKGDGWYQIHVYLQYSGLAIVLLALLFAVAELRG---FYVSSLHVKFG 757 (904)
Q Consensus 681 ~~~l~~~HG~LM~iAw~iL~P~Gil~aR~~k~~~~~~Wf~iH~~lq~~a~~l~iiG~vl~~~~~~g---~~~~~~H~~iG 757 (904)
+..++++|++||++++.+|++.|++++|..|.. ++.|..+|+.+|.++++++++|++.++.+++. .++.|.|+|+|
T Consensus 4 ~~~~Fn~HP~lM~~gfi~l~~eAiL~~r~~~~~-k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~~~~~~SlHSwlG 82 (144)
T cd08766 4 KGLIFNVHPVLMVIGFIFLAGEAILAYKTVPGS-REVQKAVHLTLHLVALVLGIVGIYAAFKFHNEVGIPNLYSLHSWLG 82 (144)
T ss_pred CcceeeccHHHHHHHHHHHHHHHHHHhhccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccHHHHHH
Confidence 346899999999999999999999999987643 55678899999999999999999998886542 47899999999
Q ss_pred hHHhHHhhccceeEE---EecCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 048731 758 ITATVLACVQPLNAF---VRPKKPANGEEISSKRLIWEYLHFIVGRFAIIAGIVALFTGMKHL 817 (904)
Q Consensus 758 i~v~~L~~lQ~l~G~---~rp~~~~~g~~~~~~R~~~~~~H~~lG~~~~iLgivni~lGl~l~ 817 (904)
++++++..+|.+.|+ +.|.... ..|+....+|+++|++++++|++++.+|+.+.
T Consensus 83 l~t~~L~~lQ~~~G~~~f~~P~~~~------~~r~~~~p~H~~~G~~~~~la~~t~~lGl~ek 139 (144)
T cd08766 83 IGTISLFGLQWLFGFVTFWFPGASR------NTRAALLPWHVFLGLAIYYLAIATAETGLLEK 139 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999996 3665433 45667778999999999999999999999763
No 18
>PLN02810 carbon-monoxide oxygenase
Probab=99.69 E-value=2.9e-17 Score=170.58 Aligned_cols=160 Identities=19% Similarity=0.179 Sum_probs=128.5
Q ss_pred ccceeehhHHHHHHHHhhccceEEEEEeecccCCcccEEeeehhhhhHHHHHHHHHHhhhhhhC--C-Cccccccchhhh
Q 048731 682 RPVLAVHGFMMFLAWGILLPGGILAARYLKHVKGDGWYQIHVYLQYSGLAIVLLALLFAVAELR--G-FYVSSLHVKFGI 758 (904)
Q Consensus 682 ~~l~~~HG~LM~iAw~iL~P~Gil~aR~~k~~~~~~Wf~iH~~lq~~a~~l~iiG~vl~~~~~~--g-~~~~~~H~~iGi 758 (904)
+..+++|++||++++.+|...||++.|.++.. ++.+..+|+.+|.++++++++|+..+|..++ + .+++|.|+|+|+
T Consensus 44 ~~~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~~-k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~~i~nlySLHSWlGl 122 (231)
T PLN02810 44 NLIFNLHPVLMLIGLIIIGGEAIMSYKSLPLK-KEVKKLIHLVLHAIALILGIFGICAAFKNHNESGIANLYSLHSWLGI 122 (231)
T ss_pred CceeeehHHHHHHHHHHHhhHHHHHhhccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeHHHHHHH
Confidence 45899999999999999999999999987653 4567789999999999999999999987654 3 378999999999
Q ss_pred HHhHHhhccceeEE---EecCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhc-----ccccCCCcchhhh
Q 048731 759 TATVLACVQPLNAF---VRPKKPANGEEISSKRLIWEYLHFIVGRFAIIAGIVALFTGMKHL-----GERYGSENVHGLI 830 (904)
Q Consensus 759 ~v~~L~~lQ~l~G~---~rp~~~~~g~~~~~~R~~~~~~H~~lG~~~~iLgivni~lGl~l~-----~~~~~~~~~~g~~ 830 (904)
+++++..+|.+.|+ +.|.... ..|.....+|..+|.++++++++++.+|+.+. ...|+....++.+
T Consensus 123 ~tv~Lf~lQw~~Gf~~Fl~P~~~~------~~R~~~lP~Hv~~Gl~if~LAiata~lGi~EKl~Fl~~~~~~~~~~Ea~l 196 (231)
T PLN02810 123 GIISLYGIQWIYGFIVFFFPGGST------NLRSGSLPWHVLFGLFVYILAVGNAALGFLEKLTFLESGGLDKYGSEALL 196 (231)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCch------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCchhhh
Confidence 99999999999997 5676554 55777789999999999999999999998763 2244444456777
Q ss_pred hHHHHHHHH-HHhhhheee
Q 048731 831 WALIVWFLI-VALIVVYLE 848 (904)
Q Consensus 831 ~~~i~wv~~-~~~~~~~Le 848 (904)
.++++-+++ +.+++++..
T Consensus 197 vN~~Glliv~fg~~V~~~~ 215 (231)
T PLN02810 197 VNFTAIITILYGAFVVLTA 215 (231)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 777665533 333333333
No 19
>PLN02680 carbon-monoxide oxygenase
Probab=99.66 E-value=8.9e-17 Score=168.19 Aligned_cols=162 Identities=16% Similarity=0.191 Sum_probs=125.7
Q ss_pred ccceeehhHHHHHHHHhhccceEEEEEeecccCCcccEEeeehhhhhHHHHHHHHHHhhhhhhC--C-Cccccccchhhh
Q 048731 682 RPVLAVHGFMMFLAWGILLPGGILAARYLKHVKGDGWYQIHVYLQYSGLAIVLLALLFAVAELR--G-FYVSSLHVKFGI 758 (904)
Q Consensus 682 ~~l~~~HG~LM~iAw~iL~P~Gil~aR~~k~~~~~~Wf~iH~~lq~~a~~l~iiG~vl~~~~~~--g-~~~~~~H~~iGi 758 (904)
..++++|++||++++.+++..++++.|..+.. ++.+..+|+.+|.++++++++|+..++..++ + .|+.|.|+|+|+
T Consensus 44 ~~~Fn~HPlLM~~Gfi~l~geAIL~yr~~~~~-k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~~~~nfySlHSWlGl 122 (232)
T PLN02680 44 DLIFNVHPVLMVIGLVLLNGEAMLAYKTVPGT-KNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEKGIDNFYSLHSWLGL 122 (232)
T ss_pred cceEechHHHHHHHHHHHHHHHHhcccccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccccHHHHHHH
Confidence 45899999999999999999999999977653 5566789999999999999999998887654 2 478999999999
Q ss_pred HHhHHhhccceeEE---EecCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhc------ccccCCCcchhh
Q 048731 759 TATVLACVQPLNAF---VRPKKPANGEEISSKRLIWEYLHFIVGRFAIIAGIVALFTGMKHL------GERYGSENVHGL 829 (904)
Q Consensus 759 ~v~~L~~lQ~l~G~---~rp~~~~~g~~~~~~R~~~~~~H~~lG~~~~iLgivni~lGl~l~------~~~~~~~~~~g~ 829 (904)
+++++..+|.+.|+ +.|.... ..|+....+|+++|+++++|+++++.+|+.+. ...|+....++.
T Consensus 123 ~t~iL~~lQ~~~Gf~~f~~P~~~~------~~R~~~~p~H~~~G~~if~LaiaT~~lG~~Ek~~f~~~~~~~~~~~~e~~ 196 (232)
T PLN02680 123 ACLFLFSLQWAAGFVTFWYPGGSR------NSRASLLPWHVFFGIYIYALAVATATTGILEKATFLQSNKVISRYSTEAM 196 (232)
T ss_pred HHHHHHHHHHHHHHHHHHccCCch------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCCCchhh
Confidence 99999999999996 4565433 34565668999999999999999999998763 123444445666
Q ss_pred hhHHHHHHHH-HHhhhheeehh
Q 048731 830 IWALIVWFLI-VALIVVYLEFR 850 (904)
Q Consensus 830 ~~~~i~wv~~-~~~~~~~Le~~ 850 (904)
+.+.++-+++ +.+++++....
T Consensus 197 lvN~~gl~~~~fg~~V~~~v~~ 218 (232)
T PLN02680 197 LVNSLGILIVVLGGFVILAIVT 218 (232)
T ss_pred hHhHHHHHHHHHHHHHHHhhcc
Confidence 6766554433 33333444333
No 20
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=99.65 E-value=1.3e-16 Score=165.10 Aligned_cols=171 Identities=20% Similarity=0.230 Sum_probs=139.6
Q ss_pred ccceeehhHHHHHHHHhhccceEEEEEeecccCCcccEEeeehhhhhHHHHHHHHHHhhhhhhCC---Cccccccchhhh
Q 048731 682 RPVLAVHGFMMFLAWGILLPGGILAARYLKHVKGDGWYQIHVYLQYSGLAIVLLALLFAVAELRG---FYVSSLHVKFGI 758 (904)
Q Consensus 682 ~~l~~~HG~LM~iAw~iL~P~Gil~aR~~k~~~~~~Wf~iH~~lq~~a~~l~iiG~vl~~~~~~g---~~~~~~H~~iGi 758 (904)
+..+++|++||+++|.++.-.+++++|.+|...++.-.-+|..+|+.+++++++|+..+|.+++. .++++.|+|+|+
T Consensus 52 ~~~fnlHP~lMviGfI~l~GeAiL~YR~~r~~~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~i~NfySLHSWlGl 131 (245)
T KOG1619|consen 52 NKEFNLHPVLMVIGFIYLQGEAILIYRVFRYTSKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVGIANFYSLHSWLGL 131 (245)
T ss_pred chhcCcchHHHHHHHHHhccceeeeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccceeeHHHHHHH
Confidence 46789999999999999999999999998876555556799999999999999999999987653 268999999999
Q ss_pred HHhHHhhccceeEEE---ecCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhcc-----cccCCCcchhhh
Q 048731 759 TATVLACVQPLNAFV---RPKKPANGEEISSKRLIWEYLHFIVGRFAIIAGIVALFTGMKHLG-----ERYGSENVHGLI 830 (904)
Q Consensus 759 ~v~~L~~lQ~l~G~~---rp~~~~~g~~~~~~R~~~~~~H~~lG~~~~iLgivni~lGl~l~~-----~~~~~~~~~g~~ 830 (904)
+++++..+|.+.||+ .|.... +.|...-.+|+.+|..+++++++|+.+|+.+.. ..++....++.+
T Consensus 132 ~~v~ly~~Q~v~GF~tfl~pg~~~------~~Rs~lmP~H~~~Gl~~f~lai~ta~~Gl~ek~~f~~~~~~s~~~~e~~l 205 (245)
T KOG1619|consen 132 CVVILYSLQWVFGFFTFLFPGSPE------SYRSRLMPWHVFLGLAIFILAIVTALTGLLEKLTFLCFGDLSTKNPEGYL 205 (245)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCc------cHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCHHHHH
Confidence 999999999999974 555444 678888999999999999999999999995532 244555667777
Q ss_pred hHHHHH-HHHHHhhhheeehhhhhhhhcc
Q 048731 831 WALIVW-FLIVALIVVYLEFREKQRRRER 858 (904)
Q Consensus 831 ~~~i~w-v~~~~~~~~~Le~~~~~~r~~~ 858 (904)
.++++- ++...++++++.+...|||.+.
T Consensus 206 ~n~~gv~~il~g~~Vl~~v~~~~~kr~s~ 234 (245)
T KOG1619|consen 206 VNFLGVFIILFGVLVLTLVTPPPWKRPSE 234 (245)
T ss_pred HHHHHHHHHHHHHHheEEEecCCCCCCCC
Confidence 776553 3445557778888888876554
No 21
>KOG3568 consensus Dopamine beta-monooxygenase [Amino acid transport and metabolism]
Probab=99.65 E-value=2.2e-16 Score=174.55 Aligned_cols=141 Identities=24% Similarity=0.495 Sum_probs=117.7
Q ss_pred ccccccccCc--cEEEEEeeecCCCeEEEEEEEEecCCCeEEEEecCCCCCCCCccCccEEEEEEecCCceEEEEeeecC
Q 048731 171 MFDNCKVLSK--EFRIRWTLYADENSIEIGLEAATGTQNYMAFGWANPNATSGFMLGADVAMTGFKQEGLPFVDDFYITK 248 (904)
Q Consensus 171 ~~~nc~~L~~--~~~l~W~v~~~~~~I~i~L~~~~~~~~y~afG~S~p~~~~~~M~gaDvvV~~vd~~g~~~~~Dyy~~~ 248 (904)
.|++.+.|+. +++|+|.++.++..|.|+|..+ +.+|++|||| + .+.|.+||+||+|.++ +.+|+.|+|.+.
T Consensus 32 ~~~~h~~~~~e~~~~lsW~vdy~~q~i~F~l~~~--t~~~v~fGfS-d---rG~lanaDivv~~n~g-~~~~~~DayTn~ 104 (603)
T KOG3568|consen 32 TYPHHTLLDSEGKYWLSWSVDYRGQQIAFRLQVR--TAGYVGFGFS-D---RGALANADIVVGGNAG-GRPYLQDAYTNA 104 (603)
T ss_pred CccceeeecCCCcEEEEEeeccccceeEEEEEec--cCCEEEEecC-C---cCCcccCcEEEEeccC-CchhhhhhhcCC
Confidence 4667788766 6999999999999999999776 5799999999 3 5999999999999984 679999999887
Q ss_pred CcccccCCCCCCCcCCCccccCCCCCCcccceEEEEEEEeCCEEEEEEEecCCCCCCCCCeeecCCCcEEEEEEeCCCCC
Q 048731 249 YSECVNKDGSYSGVCPDAIYEGSDSGGLVNNTRLVYGHRRDGVSFIRYKRPLVSSDKKYDFSVNYTENMQVVWALGLLKP 328 (904)
Q Consensus 249 ~~~c~~~~g~~~g~cpD~~~~g~~~~g~~nd~~l~~g~~~~G~t~i~f~R~L~t~D~~~D~~i~~~~~~~vIwA~G~~~~ 328 (904)
..|-. .|. +||++|+...++...|+|.|||||.|||+ .|+.|. +++++||||+-..+.
T Consensus 105 d~qi~----------~D~----------QQDyqll~~~e~~~~~~i~frRkl~TCDp-~Dy~i~-dgTv~vv~a~~eed~ 162 (603)
T KOG3568|consen 105 DGQIK----------KDA----------QQDYQLLYAMENSTHTIIEFRRKLHTCDP-NDYSIT-DGTVRVVWAYLEEDA 162 (603)
T ss_pred CCcee----------cch----------hhhhHHHhhhccCCccEEEEecccCcCCc-cceecc-CCeEEEEEEEeccch
Confidence 76532 354 69999999999999999999999999999 899997 888999999876554
Q ss_pred CCCCCCccccCCC
Q 048731 329 PDTLTPYYLPQNH 341 (904)
Q Consensus 329 ~~~~~~~y~~~~h 341 (904)
.+.++.|++.+.
T Consensus 163 -r~l~~v~~~~~~ 174 (603)
T KOG3568|consen 163 -RELGPVYHDSNR 174 (603)
T ss_pred -hhcccccccccc
Confidence 345555544443
No 22
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=99.65 E-value=5.4e-17 Score=160.49 Aligned_cols=129 Identities=19% Similarity=0.159 Sum_probs=111.0
Q ss_pred cceeehhHHHHHHHHhhccceEEEEEeecccC--CcccEEeeehhhhhHHHHHHHHHHhhhhhhC---CCccccccchhh
Q 048731 683 PVLAVHGFMMFLAWGILLPGGILAARYLKHVK--GDGWYQIHVYLQYSGLAIVLLALLFAVAELR---GFYVSSLHVKFG 757 (904)
Q Consensus 683 ~l~~~HG~LM~iAw~iL~P~Gil~aR~~k~~~--~~~Wf~iH~~lq~~a~~l~iiG~vl~~~~~~---g~~~~~~H~~iG 757 (904)
..+++|++||++++.+++..+|++.|..+..+ ++.+..+|+.+|.+++++.++|++.++.+++ ..+++|.|+|+|
T Consensus 10 ~~Fn~HPlLm~~Gfi~l~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~~~~fySlHSwlG 89 (153)
T cd08765 10 AEFNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHNAKNIPNMYSLHSWVG 89 (153)
T ss_pred CeeechHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHH
Confidence 48899999999999999999999999654432 5567889999999999999999998887643 247999999999
Q ss_pred hHHhHHhhccceeEE---EecCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 048731 758 ITATVLACVQPLNAF---VRPKKPANGEEISSKRLIWEYLHFIVGRFAIIAGIVALFTGMKHL 817 (904)
Q Consensus 758 i~v~~L~~lQ~l~G~---~rp~~~~~g~~~~~~R~~~~~~H~~lG~~~~iLgivni~lGl~l~ 817 (904)
++++++..+|.+.|+ +.|.... ..|+....+|+++|+++++|+++++.+|+.+.
T Consensus 90 l~t~~l~~lQ~~~Gf~~f~~P~~~~------~~r~~~~p~H~~~G~~i~~Lai~t~~lG~~ek 146 (153)
T cd08765 90 LAAVILYPLQLVLGISVYLLPVAPV------RLRAALMPLHVYSGLFIFGTVIATALMGITEK 146 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999996 3565432 46778888999999999999999999999764
No 23
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.64 E-value=6.9e-17 Score=162.71 Aligned_cols=129 Identities=19% Similarity=0.204 Sum_probs=111.5
Q ss_pred cceeehhHHHHHHHHhhccceEEEEEeeccc--CCcccEEeeehhhhhHHHHHHHHHHhhhhhhCC---Cccccccchhh
Q 048731 683 PVLAVHGFMMFLAWGILLPGGILAARYLKHV--KGDGWYQIHVYLQYSGLAIVLLALLFAVAELRG---FYVSSLHVKFG 757 (904)
Q Consensus 683 ~l~~~HG~LM~iAw~iL~P~Gil~aR~~k~~--~~~~Wf~iH~~lq~~a~~l~iiG~vl~~~~~~g---~~~~~~H~~iG 757 (904)
+.+++|++||++++.+|+..++++.|..+.. ++..|+.+|+.+|.++++++++|+..++.+++. .+++|.|+|+|
T Consensus 33 ~~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~~~~nlySlHSWlG 112 (179)
T cd08762 33 KNFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVHHTANLYSLHSWVG 112 (179)
T ss_pred CceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHH
Confidence 4799999999999999999999999976643 355678999999999999999999999987643 36889999999
Q ss_pred hHHhHHhhccceeEEE---ecCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 048731 758 ITATVLACVQPLNAFV---RPKKPANGEEISSKRLIWEYLHFIVGRFAIIAGIVALFTGMKHL 817 (904)
Q Consensus 758 i~v~~L~~lQ~l~G~~---rp~~~~~g~~~~~~R~~~~~~H~~lG~~~~iLgivni~lGl~l~ 817 (904)
++++++..+|.+.|++ .|.... ..|.....+|+.+|+++++++++++.+|+.+.
T Consensus 113 l~t~~Lf~lQ~~~Gf~~f~~p~~~~------~~ra~~~p~H~~~G~~if~Laiat~~lGl~ek 169 (179)
T cd08762 113 ICTVALFTCQWVMGFTSFLLPWAPM------WLRALVKPIHVFFGAMILVLSIASCISGINEK 169 (179)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCch------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999973 443332 46777799999999999999999999999764
No 24
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.64 E-value=6.6e-17 Score=158.82 Aligned_cols=128 Identities=23% Similarity=0.238 Sum_probs=112.9
Q ss_pred cceeehhHHHHHHHHhhccceEEEEEeecccCCcccEEeeehhhhhHHHHHHHHHHhhhhhhC---CCccccccchhhhH
Q 048731 683 PVLAVHGFMMFLAWGILLPGGILAARYLKHVKGDGWYQIHVYLQYSGLAIVLLALLFAVAELR---GFYVSSLHVKFGIT 759 (904)
Q Consensus 683 ~l~~~HG~LM~iAw~iL~P~Gil~aR~~k~~~~~~Wf~iH~~lq~~a~~l~iiG~vl~~~~~~---g~~~~~~H~~iGi~ 759 (904)
.++++|+++|++++.+++..++++.|..+...++.+..+|+.+|.+++++.++|+...+.+++ ..|++|.|+|+|++
T Consensus 5 ~~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~~k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~~~~hf~SlHswlGl~ 84 (143)
T cd08763 5 LQFNVHPLCMVLGLVFLCGEALLVYRVFRNETKRSTKILHGLLHIMALVISLVGLVAVFDYHQANGYPDMYSLHSWCGIL 84 (143)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHHHH
Confidence 489999999999999999999999998776656667789999999999999999998887643 24799999999999
Q ss_pred HhHHhhccceeEE---EecCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q 048731 760 ATVLACVQPLNAF---VRPKKPANGEEISSKRLIWEYLHFIVGRFAIIAGIVALFTGMKH 816 (904)
Q Consensus 760 v~~L~~lQ~l~G~---~rp~~~~~g~~~~~~R~~~~~~H~~lG~~~~iLgivni~lGl~l 816 (904)
++++..+|.+.|+ +.|.... +.|..++.+|+++|+++++++++++.+|+.+
T Consensus 85 t~~L~~lQ~~~G~~~f~~P~~~~------~~r~~~~p~H~~~G~~~f~la~~t~~lG~~e 138 (143)
T cd08763 85 TFVLYFLQWLIGFSFFLFPGASF------TLRSQYKPLHEFFGRALFLSSVGTSLLGLTE 138 (143)
T ss_pred HHHHHHHHHHHHHHHHHcCCCch------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999995 4565444 5678899999999999999999999999965
No 25
>cd00241 CDH_cytochrome Cellobiose dehydrogenase (CellobioseDH), cytochrome domain; This extracellular fungal oxidoreductase degrades both lignin and cellulose. It is a hemoflavoenzyme that is comprised of a b-type cytochrome domain linked to a large flavodehydrogenase domain. The 2 domains can be separated proteolytically. The cytochrome domain folds as a beta sandwich and complexes a heme molecule.
Probab=99.29 E-value=1e-10 Score=119.69 Aligned_cols=144 Identities=17% Similarity=0.216 Sum_probs=107.2
Q ss_pred ccEEEEEEEeCC-----CceEEEEEEECCCccEEEEEeCCCCCCccEEEEEEcCCCcEEEEEEeecCCCCCccCCCccce
Q 048731 519 QQVTFFWTLSKD-----KESISFAARGEKKSGYLAIGFGSGMVNSYAYVGWIDDIGKGHVNTYWIDSMDASGVHPTVENM 593 (904)
Q Consensus 519 ~~~~l~Wt~~~~-----~~sI~f~lsg~s~~GWVAiGfs~~M~gSdavIg~~d~dG~v~V~~~~~~G~s~p~v~pts~~l 593 (904)
.+++|.+.++.+ ..++.++|++|.+.||+|+|+|.+|.++.++|+|.+++ ++++++|+.+|+.+|........+
T Consensus 22 ~~itfgialP~~a~s~~~~d~i~qi~aP~~~gW~gls~Gg~M~~~~L~vaw~~g~-~Vt~S~R~atg~~~P~~y~g~a~~ 100 (184)
T cd00241 22 HDVTYGIVLPPDALGADSTEFIGELVAPRASGWIGLALGGAMTNSLLLVAWPNGN-QIVSSTRYATGYTLPDAYTGPATI 100 (184)
T ss_pred CCeEEEEEcCCcccCCCCCCEEEEEeCcCCCCeEEEeecccCCCCeEEEEEcCCC-eEEEeEEEecCccCCCccCCCceE
Confidence 478888888763 46899999999889999999999999999999999864 699999999999998665444577
Q ss_pred eeee-eeeeCcEEEEEEEccCCCCCCCCCCCCCCcccccCCCCCeEEEEEecCCC--CCCCCc-cceeecccCCCcEEEE
Q 048731 594 TYVR-CKSENGFITLEFTRPLKPSCNHSHRNSPKCKNIIDPTTPLKVIWAMGSSW--TDGHLT-ERNMHFVKSQRPVRVL 669 (904)
Q Consensus 594 ~~~~-~~~~dG~~t~~FtR~l~~~~~~~~~~~~~~~~~~d~~~~~~iIwA~G~~~--~~~~l~-~~~~H~~~s~g~~~id 669 (904)
+.+. ..++++++++.|+|. +|..|..+. -.++++.-.++||.++.. +..+.. ...+|+ +.|.+.+|
T Consensus 101 t~L~gs~vn~t~~t~~~rC~---nC~~W~~gg-----~~~~t~~~~~~wA~~~~~~~~p~~~~a~i~~Hd--~~G~f~~d 170 (184)
T cd00241 101 TQLPSSSVNSTHWKLVFRCQ---NCTSWNNGG-----GIDPTSQGVLAWAFSNVAVDDPSDPQSTFSEHT--DFGFFGIN 170 (184)
T ss_pred EECCCCcEeCCEEEEEEEeC---CCcccCCCC-----ccCcCCCceEEEEECCCCCCCCCCcccCCceec--CCcceeEe
Confidence 7775 458899999999995 787775222 123333338999986222 222222 247898 45789999
Q ss_pred eecC
Q 048731 670 LLRG 673 (904)
Q Consensus 670 l~~G 673 (904)
|...
T Consensus 171 l~~A 174 (184)
T cd00241 171 LSDA 174 (184)
T ss_pred chhc
Confidence 8643
No 26
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=98.93 E-value=1.1e-10 Score=109.31 Aligned_cols=89 Identities=28% Similarity=0.414 Sum_probs=76.2
Q ss_pred cCcccceeehhHHHHHHHHhhccceEEEEEeecccCCcccEEeeehhhhhHHHHHHHHHHhhhhhhCC---Cccccccch
Q 048731 679 QDLRPVLAVHGFMMFLAWGILLPGGILAARYLKHVKGDGWYQIHVYLQYSGLAIVLLALLFAVAELRG---FYVSSLHVK 755 (904)
Q Consensus 679 ~~~~~l~~~HG~LM~iAw~iL~P~Gil~aR~~k~~~~~~Wf~iH~~lq~~a~~l~iiG~vl~~~~~~g---~~~~~~H~~ 755 (904)
++.+.++.+|+++|.+||++++|+|+++.+. | .+| |...|+++++++++|+.++..+.+. +..++.|.+
T Consensus 12 ~~~~~~l~~Hi~lm~la~~il~Pi~lvL~~~-~----sr~---~~~~q~~~~~l~~~g~~~g~~~~~~~p~lyp~n~H~k 83 (105)
T PF10348_consen 12 SPHRSALYAHIVLMTLAWVILYPIGLVLGNA-R----SRW---HLPVQTVFLVLMILGLFLGSVYNGSTPDLYPNNAHGK 83 (105)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHc-c----chH---HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHH
Confidence 3456789999999999999999999997554 2 234 9999999999999999999886543 356899999
Q ss_pred hhhHHhHHhhccceeEEEec
Q 048731 756 FGITATVLACVQPLNAFVRP 775 (904)
Q Consensus 756 iGi~v~~L~~lQ~l~G~~rp 775 (904)
+|.++++++++|+++|++++
T Consensus 84 ~g~il~~l~~~q~~~gv~~~ 103 (105)
T PF10348_consen 84 MGWILFVLMIVQVILGVILK 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998753
No 27
>KOG3568 consensus Dopamine beta-monooxygenase [Amino acid transport and metabolism]
Probab=98.60 E-value=1.1e-07 Score=106.59 Aligned_cols=126 Identities=17% Similarity=0.368 Sum_probs=96.2
Q ss_pred CcccCccccC-CccEEEEEEEeCCCceEEEEEEECCCccEEEEEeCC--CCCCccEEEEEEcCCCcEEEEEEeecCCCCC
Q 048731 508 DMYNNSVVLD-DQQVTFFWTLSKDKESISFAARGEKKSGYLAIGFGS--GMVNSYAYVGWIDDIGKGHVNTYWIDSMDAS 584 (904)
Q Consensus 508 d~y~~c~~Ld-~~~~~l~Wt~~~~~~sI~f~lsg~s~~GWVAiGfs~--~M~gSdavIg~~d~dG~v~V~~~~~~G~s~p 584 (904)
..|...+.++ +.++.+.|+++-..+.|.|.+...+ .+||.||||+ .|+|||++++|.+ .+...++|+|.+-...-
T Consensus 31 s~~~~h~~~~~e~~~~lsW~vdy~~q~i~F~l~~~t-~~~v~fGfSdrG~lanaDivv~~n~-g~~~~~~DayTn~d~qi 108 (603)
T KOG3568|consen 31 STYPHHTLLDSEGKYWLSWSVDYRGQQIAFRLQVRT-AGYVGFGFSDRGALANADIVVGGNA-GGRPYLQDAYTNADGQI 108 (603)
T ss_pred CCccceeeecCCCcEEEEEeeccccceeEEEEEecc-CCEEEEecCCcCCcccCcEEEEecc-CCchhhhhhhcCCCCce
Confidence 4455666655 4599999998877779999999875 6899999997 6999999999976 35689999996433322
Q ss_pred ccCCCccceeeeeeeeeCcEEEEEEEccCCCCCCCCCCCCCCcccccCCCCCeEEEEEecC
Q 048731 585 GVHPTVENMTYVRCKSENGFITLEFTRPLKPSCNHSHRNSPKCKNIIDPTTPLKVIWAMGS 645 (904)
Q Consensus 585 ~v~pts~~l~~~~~~~~dG~~t~~FtR~l~~~~~~~~~~~~~~~~~~d~~~~~~iIwA~G~ 645 (904)
..+ .|||..++....+...+++.|+|++.+ |+ + ++.....++.+++||+-.
T Consensus 109 ~~D-~QQDyqll~~~e~~~~~~i~frRkl~T-CD-p-------~Dy~i~dgTv~vv~a~~e 159 (603)
T KOG3568|consen 109 KKD-AQQDYQLLYAMENSTHTIIEFRRKLHT-CD-P-------NDYSITDGTVRVVWAYLE 159 (603)
T ss_pred ecc-hhhhhHHHhhhccCCccEEEEecccCc-CC-c-------cceeccCCeEEEEEEEec
Confidence 222 578888888888888899999999997 74 1 223333578899999743
No 28
>PF04526 DUF568: Protein of unknown function (DUF568); InterPro: IPR017214 This group represents an uncharacterised conserved protein.
Probab=97.48 E-value=0.00093 Score=62.40 Aligned_cols=87 Identities=25% Similarity=0.295 Sum_probs=67.6
Q ss_pred CCCccEEEEEEcCC-CcEEEEEEeecCCCCCc-cCCCccceeeeeeeeeCcEEEEEEEccCCCCCCCCCCCCCCcccccC
Q 048731 555 MVNSYAYVGWIDDI-GKGHVNTYWIDSMDASG-VHPTVENMTYVRCKSENGFITLEFTRPLKPSCNHSHRNSPKCKNIID 632 (904)
Q Consensus 555 M~gSdavIg~~d~d-G~v~V~~~~~~G~s~p~-v~pts~~l~~~~~~~~dG~~t~~FtR~l~~~~~~~~~~~~~~~~~~d 632 (904)
|.|+.++|++.+.+ |...+..|.++++.... ..+.+.++.+++..+.+|.+++.-+-+|..+
T Consensus 1 M~GtqALvAf~~~~~G~~~v~T~~i~sy~~~l~~~~lsf~v~~lsae~~~~~~~IfAtl~Lp~n---------------- 64 (101)
T PF04526_consen 1 MVGTQALVAFKNSNGGSVTVYTYNITSYSPSLQPGPLSFDVSDLSAEYSGGEMTIFATLKLPGN---------------- 64 (101)
T ss_pred CCCceEEEEEeCCCCceEEEEEEeecccccccccccccccccceEeEEeCCEEEEEEEEEcCCC----------------
Confidence 99999999999988 88899999999887522 2224567788889999999999888877743
Q ss_pred CCCCeEEEEEecCCCCCCCCccceeeccc
Q 048731 633 PTTPLKVIWAMGSSWTDGHLTERNMHFVK 661 (904)
Q Consensus 633 ~~~~~~iIwA~G~~~~~~~l~~~~~H~~~ 661 (904)
.+..+++|..|+..+++.+ .+|+..
T Consensus 65 -~t~vnhVWQ~G~~v~gg~p---~~H~~~ 89 (101)
T PF04526_consen 65 -STSVNHVWQVGPSVQGGSP---QPHPTS 89 (101)
T ss_pred -CcEEEEEeCcCCccCCCcc---ccCCCC
Confidence 2568999999998755544 357643
No 29
>cd00241 CDH_cytochrome Cellobiose dehydrogenase (CellobioseDH), cytochrome domain; This extracellular fungal oxidoreductase degrades both lignin and cellulose. It is a hemoflavoenzyme that is comprised of a b-type cytochrome domain linked to a large flavodehydrogenase domain. The 2 domains can be separated proteolytically. The cytochrome domain folds as a beta sandwich and complexes a heme molecule.
Probab=96.66 E-value=0.037 Score=57.28 Aligned_cols=133 Identities=14% Similarity=0.148 Sum_probs=84.5
Q ss_pred CeEEEEEEEEecCCCeEEEEecCCCCCCCCccCccEEEEEEecCCceEEEEeeecCCcccccCCCCCCCcCCCccccCCC
Q 048731 193 NSIEIGLEAATGTQNYMAFGWANPNATSGFMLGADVAMTGFKQEGLPFVDDFYITKYSECVNKDGSYSGVCPDAIYEGSD 272 (904)
Q Consensus 193 ~~I~i~L~~~~~~~~y~afG~S~p~~~~~~M~gaDvvV~~vd~~g~~~~~Dyy~~~~~~c~~~~g~~~g~cpD~~~~g~~ 272 (904)
..+.+||++.+. .||+|+|+. ++|.++-+.|+|-++ ++..+.=|+.+++.++. . |.|.
T Consensus 40 ~d~i~qi~aP~~-~gW~gls~G------g~M~~~~L~vaw~~g-~~Vt~S~R~atg~~~P~------------~-y~g~- 97 (184)
T cd00241 40 TEFIGELVAPRA-SGWIGLALG------GAMTNSLLLVAWPNG-NQIVSSTRYATGYTLPD------------A-YTGP- 97 (184)
T ss_pred CCEEEEEeCcCC-CCeEEEeec------ccCCCCeEEEEEcCC-CeEEEeEEEecCccCCC------------c-cCCC-
Confidence 468899988775 799999994 689999999999986 46888999999988752 1 2221
Q ss_pred CCCcccceEEEEEE-EeCCEEEEEEEecCCCCCCC-CCeeecCCCcEEEEEEeCCCCCCCCCCCccccCCCCCCCccccc
Q 048731 273 SGGLVNNTRLVYGH-RRDGVSFIRYKRPLVSSDKK-YDFSVNYTENMQVVWALGLLKPPDTLTPYYLPQNHGEPESVTYG 350 (904)
Q Consensus 273 ~~g~~nd~~l~~g~-~~~G~t~i~f~R~L~t~D~~-~D~~i~~~~~~~vIwA~G~~~~~~~~~~~y~~~~h~~~~~~~~~ 350 (904)
-.++++.++ -++++-+++||=. .|-.= .+-.+..+..-.++||++...+.+...+.-....|. .+|
T Consensus 98 -----a~~t~L~gs~vn~t~~t~~~rC~--nC~~W~~gg~~~~t~~~~~~wA~~~~~~~~p~~~~a~i~~Hd-----~~G 165 (184)
T cd00241 98 -----ATITQLPSSSVNSTHWKLVFRCQ--NCTSWNNGGGIDPTSQGVLAWAFSNVAVDDPSDPQSTFSEHT-----DFG 165 (184)
T ss_pred -----ceEEECCCCcEeCCEEEEEEEeC--CCcccCCCCccCcCCCceEEEEECCCCCCCCCCcccCCceec-----CCc
Confidence 157777543 5567888888865 33220 011222233348999996443322222221123453 467
Q ss_pred eeEeeccCC
Q 048731 351 HLVLNVSEH 359 (904)
Q Consensus 351 ~~~~~~~~~ 359 (904)
...++++..
T Consensus 166 ~f~~dl~~A 174 (184)
T cd00241 166 FFGINLSDA 174 (184)
T ss_pred ceeEechhc
Confidence 888888654
No 30
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=93.78 E-value=0.14 Score=52.80 Aligned_cols=94 Identities=14% Similarity=0.199 Sum_probs=64.6
Q ss_pred CcccEEeeehhhhhHHHHHHHHHHhhhhhh------CCCccccccchhhhHHhHHhhccceeEEEecCCCCCCccccccc
Q 048731 715 GDGWYQIHVYLQYSGLAIVLLALLFAVAEL------RGFYVSSLHVKFGITATVLACVQPLNAFVRPKKPANGEEISSKR 788 (904)
Q Consensus 715 ~~~Wf~iH~~lq~~a~~l~iiG~vl~~~~~------~g~~~~~~H~~iGi~v~~L~~lQ~l~G~~rp~~~~~g~~~~~~R 788 (904)
....|.+|..+|.+++.+.....++.+... ++......|.++-++.++++++-....+..+.. +.+
T Consensus 17 ~~~~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~~~~--------~~~ 88 (183)
T cd08761 17 GTSLFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYNKER--------NGK 88 (183)
T ss_pred ccceeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc--------CCC
Confidence 456799999999999886555555443311 111234789998888887776654444433221 123
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhh
Q 048731 789 LIWEYLHFIVGRFAIIAGIVALFTGMKH 816 (904)
Q Consensus 789 ~~~~~~H~~lG~~~~iLgivni~lGl~l 816 (904)
+-++-.|.|+|.+++++.++|...|+-.
T Consensus 89 ~hf~s~H~~lGl~~~~l~~~Q~~~G~~~ 116 (183)
T cd08761 89 PHFTSWHGILGLVTVILIVLQALGGLAL 116 (183)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHhHHH
Confidence 4556689999999999999999999854
No 31
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=93.61 E-value=0.071 Score=51.88 Aligned_cols=91 Identities=19% Similarity=0.204 Sum_probs=62.6
Q ss_pred EEeeehhhhhHHHHHHHHHHhhhhhhCC---CccccccchhhhHHhHHhhccceeEEEecCCCCCCccccccccchhhHH
Q 048731 719 YQIHVYLQYSGLAIVLLALLFAVAELRG---FYVSSLHVKFGITATVLACVQPLNAFVRPKKPANGEEISSKRLIWEYLH 795 (904)
Q Consensus 719 f~iH~~lq~~a~~l~iiG~vl~~~~~~g---~~~~~~H~~iGi~v~~L~~lQ~l~G~~rp~~~~~g~~~~~~R~~~~~~H 795 (904)
|..|..+|++++++...-.++.....+. ......|..+.++.+++.++-..+++..+.. +.+.-+.-.|
T Consensus 2 f~~H~~lm~~g~~~l~~~~il~~r~~~~~~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~--------~~~~h~~s~H 73 (131)
T cd08554 2 FNWHPLLMVIGFVFLMGEALLVYRVFRLLTKRALKLLHAILHLLAFVLGLVGLLAVFLFHNA--------GGIANLYSLH 73 (131)
T ss_pred CCccHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------cCcccchhHH
Confidence 4679999999986444333333322111 1224679999998888887776666655432 1234456689
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 048731 796 FIVGRFAIIAGIVALFTGMKHL 817 (904)
Q Consensus 796 ~~lG~~~~iLgivni~lGl~l~ 817 (904)
.++|.++++|.++|..+|+...
T Consensus 74 s~lGl~~~~l~~~q~~~G~~~~ 95 (131)
T cd08554 74 SWLGLATVLLFLLQFLSGFVLF 95 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998664
No 32
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=92.70 E-value=0.14 Score=53.24 Aligned_cols=94 Identities=19% Similarity=0.110 Sum_probs=65.0
Q ss_pred cccEEeeehhhhhHHHHH-HHHHHhhhhh-hCCCccccccchhhhHHhHHhhccceeEEEecCCCCCCccccccccchhh
Q 048731 716 DGWYQIHVYLQYSGLAIV-LLALLFAVAE-LRGFYVSSLHVKFGITATVLACVQPLNAFVRPKKPANGEEISSKRLIWEY 793 (904)
Q Consensus 716 ~~Wf~iH~~lq~~a~~l~-iiG~vl~~~~-~~g~~~~~~H~~iGi~v~~L~~lQ~l~G~~rp~~~~~g~~~~~~R~~~~~ 793 (904)
...+++|..+|++++.+. -+|.+++-.. .........|..+=++.+++.++-.++++... . ..+..++-
T Consensus 33 ~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~~~~~~~~~~H~~~q~~~~~~~i~g~~~~~~~~---~------~~~~~~~~ 103 (191)
T cd08760 33 DTLIKAHGVLMAIAWGILMPIGALLARYFLLGDPVWFYLHAGLQLLAVLLAIAGFVLGIVLV---Q------GGGGSLNN 103 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh---c------cCCCCCcC
Confidence 455789999999998754 4666554332 11222335788877777777776666666653 1 12334566
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcc
Q 048731 794 LHFIVGRFAIIAGIVALFTGMKHLG 818 (904)
Q Consensus 794 ~H~~lG~~~~iLgivni~lGl~l~~ 818 (904)
.|.++|.++++|.++|.++|+....
T Consensus 104 ~H~~lGl~~~~l~~lQ~~~G~~~~~ 128 (191)
T cd08760 104 AHAILGIIVLALAILQPLLGLLRPH 128 (191)
T ss_pred cchhhhHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999996553
No 33
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=92.34 E-value=0.22 Score=51.24 Aligned_cols=89 Identities=20% Similarity=0.120 Sum_probs=59.7
Q ss_pred EeeehhhhhHHHHHHHHHHhhh---hhhCCCccccccchhhhHHhHHhhccceeEEEecCCCCCCccccccccchhhHHH
Q 048731 720 QIHVYLQYSGLAIVLLALLFAV---AELRGFYVSSLHVKFGITATVLACVQPLNAFVRPKKPANGEEISSKRLIWEYLHF 796 (904)
Q Consensus 720 ~iH~~lq~~a~~l~iiG~vl~~---~~~~g~~~~~~H~~iGi~v~~L~~lQ~l~G~~rp~~~~~g~~~~~~R~~~~~~H~ 796 (904)
..|+-+-...++++.++..-+. ....+.-|.++|-+.|+++..|+.++..+.-. ..+ .+++.++.+|.
T Consensus 81 ~~H~~~g~~ll~~~~L~~lGG~~~~~~~~~~lf~spH~~~Gl~~~~L~~~s~al~~~---i~~------g~~~~~R~lHi 151 (175)
T PF13301_consen 81 DRHYRLGFALLAFMGLGALGGQLGTYRQNGKLFWSPHLWAGLAVVGLMAFSAALVPQ---IQK------GNRPWARRLHI 151 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHcchHHHHHcCCCCccCchHHHHHHHHHHHHHHHHHHHH---Hcc------CCchhHHHHHH
Confidence 3466555544444444443332 23344447789999999999999887655422 111 12345677999
Q ss_pred HHHHHHHHHHHHHHHHhhhhc
Q 048731 797 IVGRFAIIAGIVALFTGMKHL 817 (904)
Q Consensus 797 ~lG~~~~iLgivni~lGl~l~ 817 (904)
+++.+++++-.++.++|+...
T Consensus 152 ~lN~~~l~Lf~~q~itG~~il 172 (175)
T PF13301_consen 152 YLNSLALLLFAWQAITGWRIL 172 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998764
No 34
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=92.06 E-value=0.15 Score=49.58 Aligned_cols=90 Identities=22% Similarity=0.182 Sum_probs=61.2
Q ss_pred eeehhhhhHHHH-HHHHHHhhhh-hh--CCCccccccchhhhHHhHHhhccceeEEEecCCCCCCccccccccchhhHHH
Q 048731 721 IHVYLQYSGLAI-VLLALLFAVA-EL--RGFYVSSLHVKFGITATVLACVQPLNAFVRPKKPANGEEISSKRLIWEYLHF 796 (904)
Q Consensus 721 iH~~lq~~a~~l-~iiG~vl~~~-~~--~g~~~~~~H~~iGi~v~~L~~lQ~l~G~~rp~~~~~g~~~~~~R~~~~~~H~ 796 (904)
+|..++++++++ +-.|..+.-. .. +.......|..+.++.+++.++-..+++..+... .++.++-.|.
T Consensus 1 ~H~~lm~~~f~~l~p~gil~~r~~~~~~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~--------~~~~~~s~H~ 72 (129)
T smart00665 1 LHPVLMILGFGFLMGEAILVARPLTRFLSKPTWFLLHVVLQILALVLGVIGLLAIFISHNES--------GIANFYSLHS 72 (129)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc--------CCCCccchhH
Confidence 488999998854 4455544321 11 1112346798888888888776666666543321 1344666899
Q ss_pred HHHHHHHHHHHHHHHHhhhhcc
Q 048731 797 IVGRFAIIAGIVALFTGMKHLG 818 (904)
Q Consensus 797 ~lG~~~~iLgivni~lGl~l~~ 818 (904)
++|.++++|..+|...|+....
T Consensus 73 ~lGl~~~~l~~~Q~~~G~~~~~ 94 (129)
T smart00665 73 WLGLAAFVLAGLQWLSGFLRPL 94 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999987653
No 35
>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms]
Probab=91.71 E-value=0.071 Score=61.91 Aligned_cols=339 Identities=21% Similarity=0.219 Sum_probs=147.0
Q ss_pred EEEEEeCCCCCCccEEEEEEcCCCcEEEEEEeecCC-CCCccCCCccceeeeeeeeeCcEEEEEEEccCCCCCCCCCCCC
Q 048731 546 YLAIGFGSGMVNSYAYVGWIDDIGKGHVNTYWIDSM-DASGVHPTVENMTYVRCKSENGFITLEFTRPLKPSCNHSHRNS 624 (904)
Q Consensus 546 WVAiGfs~~M~gSdavIg~~d~dG~v~V~~~~~~G~-s~p~v~pts~~l~~~~~~~~dG~~t~~FtR~l~~~~~~~~~~~ 624 (904)
.+.+||.-.|..++..+.+.+ +...++...+.. ..+...|+.+..........++...+.|..+....+..| .
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~---~C~~~~~~~~~~~~~c~~lp~~~~~i~~~~~~~~~~~~i~~~~~~~~~w~~~---~ 76 (403)
T KOG4293|consen 3 QLIIGFALLFSLTSPAFSQTD---TCSSQTFNIDKSFDSCVDLPTLNSFIHYTYNSANGVLSIAFSAPLSSAWVAW---A 76 (403)
T ss_pred eEEehHhHHHhccCchhhhhc---ceeeeeccCCccccccccCCCCCceEEEEEecCCCeEEEEEecCCccccccc---c
Confidence 445555544444444333222 223333333333 233334566666666667779999999999887653211 1
Q ss_pred CCcccccCCCCCeEEEEEecCCCCCCCCccc-eeecccCCCcEEEEeecCccccccCccc---ceeehhHHHHHHHHhhc
Q 048731 625 PKCKNIIDPTTPLKVIWAMGSSWTDGHLTER-NMHFVKSQRPVRVLLLRGSAEAEQDLRP---VLAVHGFMMFLAWGILL 700 (904)
Q Consensus 625 ~~~~~~~d~~~~~~iIwA~G~~~~~~~l~~~-~~H~~~s~g~~~idl~~Gs~~a~~~~~~---l~~~HG~LM~iAw~iL~ 700 (904)
..............+.|+.+..... .+.+. ..|...+..+..+.+..+...++..... ...+| ++..++ .
T Consensus 77 ~~p~~t~m~~~~~~va~~~~~~g~~-~~~t~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~if~---~~~l~~--~ 150 (403)
T KOG4293|consen 77 INPTGTGMVGSRALVAYAGSSSGAT-TVKTYVILGYSPSLVPALLSFTLGNVRAECNLRSSSPIGIFA---SFKLAG--A 150 (403)
T ss_pred cCCccccccccceeeeeeccccchh-hceeeeecccchhhcccccceeeecCcchhhccCCCCceEEE---EEEeec--C
Confidence 1111100112233444444433221 11111 1222211112222222233322221111 22222 111111 5
Q ss_pred cceEEEEEeecccCC--cccEEeeehhhhhHHHHHHHHHHh--hhhh--------hCCCccccccchhhhHH-hHHhhcc
Q 048731 701 PGGILAARYLKHVKG--DGWYQIHVYLQYSGLAIVLLALLF--AVAE--------LRGFYVSSLHVKFGITA-TVLACVQ 767 (904)
Q Consensus 701 P~Gil~aR~~k~~~~--~~Wf~iH~~lq~~a~~l~iiG~vl--~~~~--------~~g~~~~~~H~~iGi~v-~~L~~lQ 767 (904)
+.+...+++...... ..+..+|..-+.-.......-+.. +... ..+..+...|.++=... .+|.-++
T Consensus 151 ~~~~~~~~w~~~~~~~~g~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~hgil~~~sw~il~p~g 230 (403)
T KOG4293|consen 151 NGGKYSAVWQVGPTGSGGGRPKRHKLSGSNLASVTSLDLTSDIGELSITSEGNFNSSGLKLRMTHGILNALSWGILFPAG 230 (403)
T ss_pred CCceeEEEEEccCCccCCCCCccCccccCCccceeecccccccccccccccCcccCcchhccccHHHHhhhhhheecccc
Confidence 667777777655432 356677776665433333322221 1111 11122334454432222 1333344
Q ss_pred ceeEEEecCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhcccccCCCcchhhhhHHHHHH--HHHHhhhh
Q 048731 768 PLNAFVRPKKPANGEEISSKRLIWEYLHFIVGRFAIIAGIVALFTGMKHLGERYGSENVHGLIWALIVWF--LIVALIVV 845 (904)
Q Consensus 768 ~l~G~~rp~~~~~g~~~~~~R~~~~~~H~~lG~~~~iLgivni~lGl~l~~~~~~~~~~~g~~~~~i~wv--~~~~~~~~ 845 (904)
++.+-+..... .....|.++|+..+...++++......|+.+.....+......-..+++.++ +.-.+..+
T Consensus 231 ~i~ary~~~~~-------~~~~~Wfy~H~~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~h~~~G~~~~~l~~lQ~~~~l 303 (403)
T KOG4293|consen 231 AIIARYLRQKP-------SGDPTWFYIHRACQFTGFILGVAGFVDGLKLSNESDGTVYSAHTDLGIILLVLAFLQPLALL 303 (403)
T ss_pred ceeEEEecccC-------CCCcchhhhhhhheeeEEEEEeeeeeeeEEEccCCCceeeeecccchhHHHHHHHHHHHHHH
Confidence 44443222221 1356677777777777777777777777666543211111111112222222 11222233
Q ss_pred eeehhhhhhhhcc-----ccCCcceecCCcccCCcccccCCCcc-----ccccccccCceEEEeecCC
Q 048731 846 YLEFREKQRRRER-----IFGRSNWVLGNLEEDDSTDLLSPTRD-----HAEKSLQRGMMEVQLEPLN 903 (904)
Q Consensus 846 ~Le~~~~~~r~~~-----~~~~~~~~lg~~~~dd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 903 (904)
+-+....|.|+.- ...+..++++.+..++.+.++.+... ..+....-+.+.|+||.++
T Consensus 304 ~Rp~~~~k~R~~~nwyH~~~g~~~~~~~~~~i~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~le~~~ 371 (403)
T KOG4293|consen 304 LRPLPESKIRRYWNWYHHLVGRLSIILGIVNIFDGLELLYPGQSWIKLGYGSILAVLGLIAVILEILS 371 (403)
T ss_pred hcCCcccCceeccceeeeecCcceeeehhhHHhhhHhhhcCCCceEEeeeeeEEEEechhhhhhhhhe
Confidence 3333333333221 23356667777777777777777644 2222345556666666543
No 36
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=91.45 E-value=0.25 Score=52.46 Aligned_cols=95 Identities=18% Similarity=0.120 Sum_probs=61.7
Q ss_pred cccEEeeehhhhhHHHHHHHHHHhhhhhhCCCc---cccccchhhhHHhHHhhccceeEEEecCCCCCCccccccccchh
Q 048731 716 DGWYQIHVYLQYSGLAIVLLALLFAVAELRGFY---VSSLHVKFGITATVLACVQPLNAFVRPKKPANGEEISSKRLIWE 792 (904)
Q Consensus 716 ~~Wf~iH~~lq~~a~~l~iiG~vl~~~~~~g~~---~~~~H~~iGi~v~~L~~lQ~l~G~~rp~~~~~g~~~~~~R~~~~ 792 (904)
...|.+|-.+|++++++...--++.+...+..+ ..-.|..+.++.+++.++-....+-.|...+ +..+-+.
T Consensus 21 ~~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~------~~~~hfy 94 (214)
T cd08764 21 GLQFNWHPLLMVLGLIFLYGNSILVYRVFRNTRKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAK------PPIPNMY 94 (214)
T ss_pred CceEeecHHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------CCCCccc
Confidence 357999999999998654433333333222111 2348999999988888766433332333221 1123344
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhh
Q 048731 793 YLHFIVGRFAIIAGIVALFTGMKH 816 (904)
Q Consensus 793 ~~H~~lG~~~~iLgivni~lGl~l 816 (904)
-.|-|+|.++++|-..|...|+..
T Consensus 95 SlHSwlGl~t~~L~~lQ~~~Gf~~ 118 (214)
T cd08764 95 SLHSWLGLTAVILFSLQWVGGFVS 118 (214)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999744
No 37
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=91.43 E-value=0.52 Score=47.07 Aligned_cols=93 Identities=18% Similarity=0.121 Sum_probs=59.9
Q ss_pred cccEEeeehhhhhHHHHHHHHHHhhhhhhCCCc--cccccchhhhHHhHHhhccceeEEEecCCCCCCccccccccchhh
Q 048731 716 DGWYQIHVYLQYSGLAIVLLALLFAVAELRGFY--VSSLHVKFGITATVLACVQPLNAFVRPKKPANGEEISSKRLIWEY 793 (904)
Q Consensus 716 ~~Wf~iH~~lq~~a~~l~iiG~vl~~~~~~g~~--~~~~H~~iGi~v~~L~~lQ~l~G~~rp~~~~~g~~~~~~R~~~~~ 793 (904)
...|.+|-.+|++++++...--++.+...+..+ ....|.++=++.+++.++-....+..+... ..+-+.-
T Consensus 5 ~~~Fn~HP~lM~~gfi~l~~eAiL~~r~~~~~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~--------~~~~~~S 76 (144)
T cd08766 5 GLIFNVHPVLMVIGFIFLAGEAILAYKTVPGSREVQKAVHLTLHLVALVLGIVGIYAAFKFHNEV--------GIPNLYS 76 (144)
T ss_pred cceeeccHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------Ccccccc
Confidence 357999999999998655443344444322222 245787777777766655443333322211 1222344
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 048731 794 LHFIVGRFAIIAGIVALFTGMKH 816 (904)
Q Consensus 794 ~H~~lG~~~~iLgivni~lGl~l 816 (904)
+|-|+|.++++|-..|...|+..
T Consensus 77 lHSwlGl~t~~L~~lQ~~~G~~~ 99 (144)
T cd08766 77 LHSWLGIGTISLFGLQWLFGFVT 99 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999753
No 38
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=90.95 E-value=0.19 Score=49.04 Aligned_cols=89 Identities=15% Similarity=0.211 Sum_probs=59.6
Q ss_pred eeehhhhhHHHHHH-HHHHhhhhh--h---CCCccccccchhhhHHhHHhhccceeEEEecCCCCCCccccccccchhhH
Q 048731 721 IHVYLQYSGLAIVL-LALLFAVAE--L---RGFYVSSLHVKFGITATVLACVQPLNAFVRPKKPANGEEISSKRLIWEYL 794 (904)
Q Consensus 721 iH~~lq~~a~~l~i-iG~vl~~~~--~---~g~~~~~~H~~iGi~v~~L~~lQ~l~G~~rp~~~~~g~~~~~~R~~~~~~ 794 (904)
+|.++|++++++.. .|+++ ... . +.......|.++-++.+++.++-.+..+...... ...-++-.
T Consensus 1 ~H~~lm~~~f~~l~~~~il~-~r~~~~~~~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~--------~~~h~~s~ 71 (137)
T PF03188_consen 1 WHPILMTIGFVFLMPEGILA-ARYNPFRRKSRKWWFRIHWILQVLALVFAIIGFVAIFINKNRN--------GKPHFKSW 71 (137)
T ss_pred CcHHHHHHHHHHHHHHHHHH-HHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--------CCCCCCCc
Confidence 49999999987655 44433 322 1 1112347898888877777766666555433221 12345668
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcc
Q 048731 795 HFIVGRFAIIAGIVALFTGMKHLG 818 (904)
Q Consensus 795 H~~lG~~~~iLgivni~lGl~l~~ 818 (904)
|.++|.+++++.++|...|+....
T Consensus 72 H~~lG~~~~~l~~~Q~~~G~~~~~ 95 (137)
T PF03188_consen 72 HSILGLATFVLALLQPLLGFFRFF 95 (137)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999987654
No 39
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=90.63 E-value=0.24 Score=49.40 Aligned_cols=92 Identities=17% Similarity=0.150 Sum_probs=63.9
Q ss_pred cEEeeehhhhhHHHHHHHHHHhhhhhhC---CCccccccchhhhHHhHHhhccceeEEEecCCCCCCccccccccchhhH
Q 048731 718 WYQIHVYLQYSGLAIVLLALLFAVAELR---GFYVSSLHVKFGITATVLACVQPLNAFVRPKKPANGEEISSKRLIWEYL 794 (904)
Q Consensus 718 Wf~iH~~lq~~a~~l~iiG~vl~~~~~~---g~~~~~~H~~iGi~v~~L~~lQ~l~G~~rp~~~~~g~~~~~~R~~~~~~ 794 (904)
=|.+|..+|++++++...--++.+-..+ .......|.++.++.+++.++-...-+..|... ..+-+.-.
T Consensus 6 ~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~~k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~--------~~~hf~Sl 77 (143)
T cd08763 6 QFNVHPLCMVLGLVFLCGEALLVYRVFRNETKRSTKILHGLLHIMALVISLVGLVAVFDYHQAN--------GYPDMYSL 77 (143)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--------CCCccccH
Confidence 4788999999998865554444443222 112346899999999888876655544433321 13345569
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 048731 795 HFIVGRFAIIAGIVALFTGMKHL 817 (904)
Q Consensus 795 H~~lG~~~~iLgivni~lGl~l~ 817 (904)
|-|+|.+++++-..|...|+..+
T Consensus 78 HswlGl~t~~L~~lQ~~~G~~~f 100 (143)
T cd08763 78 HSWCGILTFVLYFLQWLIGFSFF 100 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999997654
No 40
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=90.02 E-value=0.51 Score=43.71 Aligned_cols=76 Identities=16% Similarity=0.151 Sum_probs=51.4
Q ss_pred ceeEEEeCceEEEEEEecCCcceEEeecCC-CCcccc--ccceee-EecCCcCCCCCCCCCeEEEEecCCCCCCceeeee
Q 048731 414 PVLRVERGVPVKFSIQAGHDVALYITSDIL-GGNASL--RNVTET-IYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQS 489 (904)
Q Consensus 414 p~~~~~rg~ty~f~v~~g~~~p~~it~~~~-GG~~~~--~~~~~~-~~ag~~~~~g~~~~~~~~~~~~~~~~pd~~yy~~ 489 (904)
++|.++.|.|++|...++..|.+.+..+.. -|.+.. ...... ++ .+|+..+++|+ .|-+..|.|
T Consensus 17 ~~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~--------~~G~~~~~tF~----~~G~y~y~C 84 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLL--------APGETYSVTFT----KPGTYEYYC 84 (99)
T ss_dssp SEEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEB--------STTEEEEEEEE----SSEEEEEEE
T ss_pred CEEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceec--------CCCCEEEEEeC----CCeEEEEEc
Confidence 589999999999999877789888887331 111100 000011 11 13456677777 889999999
Q ss_pred eecc--ccceEEEe
Q 048731 490 LYDQ--KMGWRIQV 501 (904)
Q Consensus 490 ~~~~--~~g~~i~v 501 (904)
.-|. .|-.+|.|
T Consensus 85 ~PH~~~GM~G~i~V 98 (99)
T PF00127_consen 85 TPHYEAGMVGTIIV 98 (99)
T ss_dssp TTTGGTTSEEEEEE
T ss_pred CCCcccCCEEEEEE
Confidence 9999 67888876
No 41
>PRK02710 plastocyanin; Provisional
Probab=88.97 E-value=1.1 Score=43.13 Aligned_cols=70 Identities=13% Similarity=0.035 Sum_probs=45.7
Q ss_pred ceeEEEeCceEEEEEEecCCcceEEeecCCCCccccccceeeEecCCcCCCCCCCCCeEEEEecCCCCCCceeeeeeecc
Q 048731 414 PVLRVERGVPVKFSIQAGHDVALYITSDILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSLYDQ 493 (904)
Q Consensus 414 p~~~~~rg~ty~f~v~~g~~~p~~it~~~~GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~~~~~~~pd~~yy~~~~~~ 493 (904)
++|.++.|.+++|+..+...|-+.+.+. ++.. .... .-.+++..++++++ |-+.-|+|..|.
T Consensus 47 ~~i~v~~Gd~V~~~N~~~~~H~v~~~~~--~~~~---~~~~---------~~~pg~t~~~tF~~----~G~y~y~C~~H~ 108 (119)
T PRK02710 47 STLTIKAGDTVKWVNNKLAPHNAVFDGA--KELS---HKDL---------AFAPGESWEETFSE----AGTYTYYCEPHR 108 (119)
T ss_pred CEEEEcCCCEEEEEECCCCCceEEecCC--cccc---cccc---------ccCCCCEEEEEecC----CEEEEEEcCCCc
Confidence 6899999999999876665677666421 1110 0000 01123444555554 899999999999
Q ss_pred --ccceEEEe
Q 048731 494 --KMGWRIQV 501 (904)
Q Consensus 494 --~~g~~i~v 501 (904)
.|-.+|.|
T Consensus 109 ~~gM~G~I~V 118 (119)
T PRK02710 109 GAGMVGKITV 118 (119)
T ss_pred cCCcEEEEEE
Confidence 88888877
No 42
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=88.65 E-value=2 Score=44.37 Aligned_cols=115 Identities=14% Similarity=0.139 Sum_probs=71.7
Q ss_pred hHHHHHHHHhhccceEEEEEeecccCCcccEEeeehhhhhHHHHHHHHHHhhhhhhCCC-----ccccccchhhhHHhHH
Q 048731 689 GFMMFLAWGILLPGGILAARYLKHVKGDGWYQIHVYLQYSGLAIVLLALLFAVAELRGF-----YVSSLHVKFGITATVL 763 (904)
Q Consensus 689 G~LM~iAw~iL~P~Gil~aR~~k~~~~~~Wf~iH~~lq~~a~~l~iiG~vl~~~~~~g~-----~~~~~H~~iGi~v~~L 763 (904)
.++|++.|+.-+=-|.-- . .+...|.+|-.+|++++++.-.-.++.+.....+ .....|..+=.+.+++
T Consensus 11 ~~~lv~~W~~~~rgG~~w----~--~~~~~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~ 84 (179)
T cd08762 11 CVVLVVHWNQMWRGGFAW----D--GSSKNFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFIL 84 (179)
T ss_pred HHHHHHHHHHHcCCccCC----C--CCCCceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHH
Confidence 456777887776544321 1 1233799999999999876633333333221211 1246788887777777
Q ss_pred hhccceeEEEecCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 048731 764 ACVQPLNAFVRPKKPANGEEISSKRLIWEYLHFIVGRFAIIAGIVALFTGMKHL 817 (904)
Q Consensus 764 ~~lQ~l~G~~rp~~~~~g~~~~~~R~~~~~~H~~lG~~~~iLgivni~lGl~l~ 817 (904)
.++-....+-.|.... .+-.--+|-|+|.++++|=..|...|+..+
T Consensus 85 ~vvGl~avf~~hn~~~--------~~nlySlHSWlGl~t~~Lf~lQ~~~Gf~~f 130 (179)
T cd08762 85 TVIGLCAVFNFHNVHH--------TANLYSLHSWVGICTVALFTCQWVMGFTSF 130 (179)
T ss_pred HHHHHHHHHHhccccC--------ccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665554444333211 111223699999999999999999998655
No 43
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=88.52 E-value=6 Score=39.71 Aligned_cols=88 Identities=16% Similarity=0.181 Sum_probs=53.2
Q ss_pred eEEEcCccCceeEEEeCceEEEEEEec---CCcceEEeecCCCCccccccceeeEecCCcC------C-CCCCCCC--eE
Q 048731 405 VFYINKKEAPVLRVERGVPVKFSIQAG---HDVALYITSDILGGNASLRNVTETIYAGGPE------A-EGVKASP--ME 472 (904)
Q Consensus 405 ~wyiN~~~~p~~~~~rg~ty~f~v~~g---~~~p~~it~~~~GG~~~~~~~~~~~~ag~~~------~-~g~~~~~--~~ 472 (904)
.+-|||+..|.|.+++|.+.+|.+..- ..|.|-|...- .. .+.. .--.|+|. . .+..++. .+
T Consensus 43 ~f~~~~~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g---~~-~~~~--p~mdG~~~~~~~~i~p~~~~g~~~~~~ 116 (148)
T TIGR03095 43 SFEIHDLKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRG---PP-YPYM--PGMDGLGFVAGTGFLPPPKSGKFGYTD 116 (148)
T ss_pred eEEecCCCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCC---Cc-cccc--cccCCCCccccCcccCCCCCCccceeE
Confidence 577899999999999999999988776 34678886311 00 0000 00012110 0 1111222 57
Q ss_pred EEEecCCCCCCceeeeeee--ccc--cceEEE
Q 048731 473 LVWAPDRNTPDEVYYQSLY--DQK--MGWRIQ 500 (904)
Q Consensus 473 ~~~~~~~~~pd~~yy~~~~--~~~--~g~~i~ 500 (904)
++|+.+ .|-+.+|+|.. |.. |=.+|.
T Consensus 117 ~tf~f~--~aGtywyhC~~pgH~~~GM~G~ii 146 (148)
T TIGR03095 117 FTYHFS--TAGTYWYLCTYPGHAENGMYGKIV 146 (148)
T ss_pred EEEECC--CCeEEEEEcCChhHHHCCCEEEEE
Confidence 899986 69999999984 654 444443
No 44
>PLN02680 carbon-monoxide oxygenase
Probab=86.67 E-value=2.3 Score=45.69 Aligned_cols=117 Identities=16% Similarity=0.190 Sum_probs=70.7
Q ss_pred hHHHHHHHHhhccceEEEEEeecccCCcccEEeeehhhhhHHHHHHHHHHhhhhhhCCC--ccccccchhhhHHhHHhhc
Q 048731 689 GFMMFLAWGILLPGGILAARYLKHVKGDGWYQIHVYLQYSGLAIVLLALLFAVAELRGF--YVSSLHVKFGITATVLACV 766 (904)
Q Consensus 689 G~LM~iAw~iL~P~Gil~aR~~k~~~~~~Wf~iH~~lq~~a~~l~iiG~vl~~~~~~g~--~~~~~H~~iGi~v~~L~~l 766 (904)
.+.+++.|++-+=-|.-.. ...+..=|.+|-.+|++++++...-.++.+...+.. .....|..+=++.+++.++
T Consensus 21 ~~~lv~~W~~~~rgG~aw~----~~~~~~~Fn~HPlLM~~Gfi~l~geAIL~yr~~~~~k~~~K~iH~~L~~lA~~l~vv 96 (232)
T PLN02680 21 VAALVLTWTVHYRGGLALS----SDNKDLIFNVHPVLMVIGLVLLNGEAMLAYKTVPGTKNLKKLVHLTLQFLAFCLSLI 96 (232)
T ss_pred HHHHHHHHHHHhCcccccc----CCCCcceEechHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHH
Confidence 4667778887775554321 101223588999999999988443334443322221 1245687776666666654
Q ss_pred cceeEEEecCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 048731 767 QPLNAFVRPKKPANGEEISSKRLIWEYLHFIVGRFAIIAGIVALFTGMKHL 817 (904)
Q Consensus 767 Q~l~G~~rp~~~~~g~~~~~~R~~~~~~H~~lG~~~~iLgivni~lGl~l~ 817 (904)
-....+-.|.. +.++-+.-+|-|+|.++++|-.+|...|+..+
T Consensus 97 Gl~avfk~hn~--------~~~~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f 139 (232)
T PLN02680 97 GVWAALKFHNE--------KGIDNFYSLHSWLGLACLFLFSLQWAAGFVTF 139 (232)
T ss_pred HHHHHHHhccc--------cCccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44332222221 11233444899999999999999999998653
No 45
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=86.20 E-value=2.1 Score=39.66 Aligned_cols=80 Identities=11% Similarity=0.177 Sum_probs=48.6
Q ss_pred ceeEEEeCceEEEEEEecCCcceEEeecCCCCccccccceeeEecCCcCCCCCCCCCeEEEEecCCCCCCceeeeeeecc
Q 048731 414 PVLRVERGVPVKFSIQAGHDVALYITSDILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSLYDQ 493 (904)
Q Consensus 414 p~~~~~rg~ty~f~v~~g~~~p~~it~~~~GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~~~~~~~pd~~yy~~~~~~ 493 (904)
.+|.|+.|.|++|+..++..|-+++.+....-- .. ......... +-.=.+|+..+++|+. |.+.-|.|.-|+
T Consensus 17 ~~i~v~~G~~V~~~N~~~~~H~~~~~~~~~~~~-~~-~~~~~~~~~--~~~~~pG~t~~~tF~~----~G~y~y~C~~H~ 88 (99)
T TIGR02656 17 AKISIAAGDTVEWVNNKGGPHNVVFDEDAVPAG-VK-ELAKSLSHK--DLLNSPGESYEVTFST----PGTYTFYCEPHR 88 (99)
T ss_pred CEEEECCCCEEEEEECCCCCceEEECCCCCccc-hh-hhccccccc--ccccCCCCEEEEEeCC----CEEEEEEcCCcc
Confidence 479999999999997666678888765321100 00 000000000 0000235666676664 889999999999
Q ss_pred --ccceEEEe
Q 048731 494 --KMGWRIQV 501 (904)
Q Consensus 494 --~~g~~i~v 501 (904)
.|-.+|.|
T Consensus 89 ~aGM~G~I~V 98 (99)
T TIGR02656 89 GAGMVGKITV 98 (99)
T ss_pred ccCCEEEEEE
Confidence 78888865
No 46
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=83.94 E-value=0.79 Score=43.37 Aligned_cols=88 Identities=16% Similarity=0.103 Sum_probs=55.3
Q ss_pred CcccEEeeehhhhhHHH-HHHHHHHhhhhhhCCCccccccchhhhHHhHHhhccceeEEEecCCCCCCccccccccchhh
Q 048731 715 GDGWYQIHVYLQYSGLA-IVLLALLFAVAELRGFYVSSLHVKFGITATVLACVQPLNAFVRPKKPANGEEISSKRLIWEY 793 (904)
Q Consensus 715 ~~~Wf~iH~~lq~~a~~-l~iiG~vl~~~~~~g~~~~~~H~~iGi~v~~L~~lQ~l~G~~rp~~~~~g~~~~~~R~~~~~ 793 (904)
.+..++.|..+|+++++ +.-+|+++.... + +.|.-.=++.+++.++-.++|........ ..+.+-
T Consensus 14 ~~~~l~~Hi~lm~la~~il~Pi~lvL~~~~-s-----r~~~~~q~~~~~l~~~g~~~g~~~~~~~p--------~lyp~n 79 (105)
T PF10348_consen 14 HRSALYAHIVLMTLAWVILYPIGLVLGNAR-S-----RWHLPVQTVFLVLMILGLFLGSVYNGSTP--------DLYPNN 79 (105)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHcc-c-----hHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------CCCCCC
Confidence 45677899999998866 455777776553 2 23433333333333333344433222111 123466
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 048731 794 LHFIVGRFAIIAGIVALFTGMKH 816 (904)
Q Consensus 794 ~H~~lG~~~~iLgivni~lGl~l 816 (904)
.|.-+|++++++.+++.++|+..
T Consensus 80 ~H~k~g~il~~l~~~q~~~gv~~ 102 (105)
T PF10348_consen 80 AHGKMGWILFVLMIVQVILGVIL 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999854
No 47
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=83.85 E-value=5 Score=35.96 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=43.5
Q ss_pred CceeEEEeCceEEEEEEecCCcceEEeecCCCCccccccceeeEecCCcCCCCCCCCCeEEEEecCCCCCCceeeeeeec
Q 048731 413 APVLRVERGVPVKFSIQAGHDVALYITSDILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSLYD 492 (904)
Q Consensus 413 ~p~~~~~rg~ty~f~v~~g~~~p~~it~~~~GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~~~~~~~pd~~yy~~~~~ 492 (904)
-|+|.++.|.|.+|....+..|=....+.+.+... +.+ +....-.++.+|- +.|-+.-|.|..|
T Consensus 10 P~~i~v~~GdtVt~~N~d~~~Hnv~~~~g~~~~~~---------~~~-----~~~~~g~~~~~tf--~~~G~y~y~C~~H 73 (83)
T TIGR02657 10 TPELHVKVGDTVTWINREAMPHNVHFVAGVLGEAA---------LKG-----PMMKKEQAYSLTF--TEAGTYDYHCTPH 73 (83)
T ss_pred CCEEEECCCCEEEEEECCCCCccEEecCCCCcccc---------ccc-----cccCCCCEEEEEC--CCCEEEEEEcCCC
Confidence 37899999999999876443453333332211100 000 1111112333444 4588999999999
Q ss_pred cccceEEEe
Q 048731 493 QKMGWRIQV 501 (904)
Q Consensus 493 ~~~g~~i~v 501 (904)
..|-.+|.|
T Consensus 74 p~M~G~v~V 82 (83)
T TIGR02657 74 PFMRGKVVV 82 (83)
T ss_pred CCCeEEEEE
Confidence 999999876
No 48
>PLN02351 cytochromes b561 family protein
Probab=82.46 E-value=6.7 Score=42.44 Aligned_cols=119 Identities=13% Similarity=0.099 Sum_probs=68.0
Q ss_pred hhHHHHHHHHhhccceEEEEEeecccCCcccEEeeehhhhhHHHHHHHHHHhhhhhhCCCc--cccccchhhhHHhHHhh
Q 048731 688 HGFMMFLAWGILLPGGILAARYLKHVKGDGWYQIHVYLQYSGLAIVLLALLFAVAELRGFY--VSSLHVKFGITATVLAC 765 (904)
Q Consensus 688 HG~LM~iAw~iL~P~Gil~aR~~k~~~~~~Wf~iH~~lq~~a~~l~iiG~vl~~~~~~g~~--~~~~H~~iGi~v~~L~~ 765 (904)
=.++|++.|++-+=-|... . .+.-+....|.+|-.+|++++++...--++.+...+..+ ....|..+=.+.+++.+
T Consensus 22 ~~~~lvl~W~~~~rgG~aw-~-~~~~~~~iffn~HP~lMviGfi~L~geAILvYR~~~~~~k~~K~lH~~Lh~~Ali~~v 99 (242)
T PLN02351 22 VVAVLVLYWALFFKSSFLP-Q-STSQEDLVYAVLHPLLMVIGFILISGEAILVHRWLPGSRKTKKSVHLWLQGLALASGV 99 (242)
T ss_pred HHHHHHHHHHHHhCCcccc-C-CCCCccceeecccHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHH
Confidence 3567788888887655421 1 011111234579999999998765433344443332211 34567666555555554
Q ss_pred ccceeEEEecCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 048731 766 VQPLNAFVRPKKPANGEEISSKRLIWEYLHFIVGRFAIIAGIVALFTGMKHL 817 (904)
Q Consensus 766 lQ~l~G~~rp~~~~~g~~~~~~R~~~~~~H~~lG~~~~iLgivni~lGl~l~ 817 (904)
+-... -+ |.. . ...+-+--+|-|+|.++++|=.+|...|+..+
T Consensus 100 vGl~a-~f-h~~-~------~~i~nlySLHSWlGl~tv~Lf~lQwv~Gf~~F 142 (242)
T PLN02351 100 FGIWT-KF-HGQ-D------GIVANFYSLHSWMGLICVSLFGAQWLTGFMSF 142 (242)
T ss_pred HHHHH-HH-hcc-c------CCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 11 111 0 11122334699999999999999999998654
No 49
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=80.96 E-value=1.7 Score=44.00 Aligned_cols=96 Identities=13% Similarity=0.018 Sum_probs=62.0
Q ss_pred eeehhhhhHHHHHHHHHHhhhh----hhCC-C--ccccccchhhhHHhHHhhccceeEEEecCCCC--------------
Q 048731 721 IHVYLQYSGLAIVLLALLFAVA----ELRG-F--YVSSLHVKFGITATVLACVQPLNAFVRPKKPA-------------- 779 (904)
Q Consensus 721 iH~~lq~~a~~l~iiG~vl~~~----~~~g-~--~~~~~H~~iGi~v~~L~~lQ~l~G~~rp~~~~-------------- 779 (904)
.|+..-++-+++.+.|+.+... .... . .....|..+|++++++.++..+..+.+.....
T Consensus 11 ~Hw~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (188)
T PF00033_consen 11 LHWLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIPQYRL 90 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHhhc
Confidence 5877666666677777776532 1111 1 23589999999999999999988887720000
Q ss_pred CCccccccccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q 048731 780 NGEEISSKRLIWEYLHFIVGRFAIIAGIVALFTGMKH 816 (904)
Q Consensus 780 ~g~~~~~~R~~~~~~H~~lG~~~~iLgivni~lGl~l 816 (904)
..+.+.+....+|...++.-.+++++.++.+.+|+.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~ 127 (188)
T PF00033_consen 91 FPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIM 127 (188)
T ss_dssp T-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000112344568888888889999999999999888
No 50
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=80.16 E-value=2 Score=43.38 Aligned_cols=93 Identities=19% Similarity=0.159 Sum_probs=56.4
Q ss_pred ccEEeeehhhhhHHHHHHHHHHhhhhhhC-----CCccccccchhhhHHhHHhhccceeEEEecCCCCCCccccccccch
Q 048731 717 GWYQIHVYLQYSGLAIVLLALLFAVAELR-----GFYVSSLHVKFGITATVLACVQPLNAFVRPKKPANGEEISSKRLIW 791 (904)
Q Consensus 717 ~Wf~iH~~lq~~a~~l~iiG~vl~~~~~~-----g~~~~~~H~~iGi~v~~L~~lQ~l~G~~rp~~~~~g~~~~~~R~~~ 791 (904)
.=|.+|-.+|++++++.-.=.++.+.... .......|.++=.+.+++.++-...-+-.|... ..+-+
T Consensus 10 ~~Fn~HPlLm~~Gfi~l~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~--------~~~~f 81 (153)
T cd08765 10 AEFNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHNAK--------NIPNM 81 (153)
T ss_pred CeeechHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--------CCCcc
Confidence 35789999999998873322333332110 111245676665555555544333333323221 12334
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhc
Q 048731 792 EYLHFIVGRFAIIAGIVALFTGMKHL 817 (904)
Q Consensus 792 ~~~H~~lG~~~~iLgivni~lGl~l~ 817 (904)
.-.|-|+|.+++++=..|...|+..+
T Consensus 82 ySlHSwlGl~t~~l~~lQ~~~Gf~~f 107 (153)
T cd08765 82 YSLHSWVGLAAVILYPLQLVLGISVY 107 (153)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55999999999999999999998665
No 51
>PLN02810 carbon-monoxide oxygenase
Probab=78.52 E-value=6.7 Score=42.09 Aligned_cols=116 Identities=20% Similarity=0.185 Sum_probs=72.2
Q ss_pred hHHHHHHHHhhccceEEEEEeecccCCcccEEeeehhhhhHHHHHHHHHHhhhhhhCCC--ccccccchhhhHHhHHhhc
Q 048731 689 GFMMFLAWGILLPGGILAARYLKHVKGDGWYQIHVYLQYSGLAIVLLALLFAVAELRGF--YVSSLHVKFGITATVLACV 766 (904)
Q Consensus 689 G~LM~iAw~iL~P~Gil~aR~~k~~~~~~Wf~iH~~lq~~a~~l~iiG~vl~~~~~~g~--~~~~~H~~iGi~v~~L~~l 766 (904)
.+.|++.|++-+=-|.-.-.- .++.=|.+|-.+|++++++.-.--++.+...... .....|..+=.+.+++.++
T Consensus 21 ~~vlvl~W~~~~rgG~aw~~~----~~~~~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~~k~~~K~iH~~lh~~Al~l~vv 96 (231)
T PLN02810 21 GAIMVLVWSIYYRGGLAWEAT----NKNLIFNLHPVLMLIGLIIIGGEAIMSYKSLPLKKEVKKLIHLVLHAIALILGIF 96 (231)
T ss_pred HHHHHHHHHHHcCCcccccCC----CCCceeeehHHHHHHHHHHHhhHHHHHhhccccccchHHHHHHHHHHHHHHHHHH
Confidence 467788888877655421110 1123589999999998776554444444322211 2346787777777777665
Q ss_pred cceeEEEecCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q 048731 767 QPLNAFVRPKKPANGEEISSKRLIWEYLHFIVGRFAIIAGIVALFTGMKH 816 (904)
Q Consensus 767 Q~l~G~~rp~~~~~g~~~~~~R~~~~~~H~~lG~~~~iLgivni~lGl~l 816 (904)
-....+-.|.... .+-+--+|-|+|.+++++=..|-..|+..
T Consensus 97 Gl~Avf~~Hn~~~--------i~nlySLHSWlGl~tv~Lf~lQw~~Gf~~ 138 (231)
T PLN02810 97 GICAAFKNHNESG--------IANLYSLHSWLGIGIISLYGIQWIYGFIV 138 (231)
T ss_pred HHHHHHHhccccC--------CCceeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444443333211 12233489999999999999999999843
No 52
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=75.03 E-value=4 Score=30.50 Aligned_cols=30 Identities=27% Similarity=0.352 Sum_probs=26.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 048731 788 RLIWEYLHFIVGRFAIIAGIVALFTGMKHL 817 (904)
Q Consensus 788 R~~~~~~H~~lG~~~~iLgivni~lGl~l~ 817 (904)
|+.+..+|+++|..+.+.-++-+++|+.+.
T Consensus 2 r~~~~~~H~~~g~~~~~~ll~~~lTG~~l~ 31 (34)
T PF13172_consen 2 RKFWRKIHRWLGLIAAIFLLLLALTGALLN 31 (34)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667888999999999999999999998654
No 53
>PF09459 EB_dh: Ethylbenzene dehydrogenase; InterPro: IPR019020 This entry represents a haem-binding domain found in cytochromes b558/566 (subunit A), c-551 and c-552, as well as in members of the type-II members of the microbial dimethyl sulphoxide (DMSO) reductase family. The DMSO reductase family is a large and rapidly expanding group of enzymes found in bacteria and archaea that share a common form of molybdenum cofactor known as bis(molybdopterin guanine dinucleotide)Mo []. In addition to the molybdopterin subunit, these enzymes also contain an iron-sulphur subunit. These include two distinct but very closely related periplasmic proteins of anaerobic respiration: selenate reductase and chlorate reductase []. Other proteins containing this subunit include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase [, , ]. One member of the DMSO reductase family is eythylbenzene dehydrogenase, which is a heterotrimer of three subunits that catalyses the anaerobic degradation of hydrocarbons (alpha, beta and gamma subunits). This entry matches the gamma subunit, whose structure is known []. The alpha subunit contains the catalytic centre as a Molybdenum cofactor-complex. This removes an electron-pair from the hydrocarbon and passes it along an electron transport system involving iron-sulphur complexes held in the beta subunit and a Haem b molecule contained in the gamma subunit. The electron-pair is then subsequently passed to an as yet unknown receiver. The enzyme is found in a variety of different bacteria.; GO: 0020037 heme binding; PDB: 2IVF_C.
Probab=74.82 E-value=5.4 Score=43.77 Aligned_cols=47 Identities=26% Similarity=0.417 Sum_probs=27.8
Q ss_pred ccceEEEEEEEeCCEEEEEEEecCCCCC-CCCCeeecCCCcEEEEEEeC
Q 048731 277 VNNTRLVYGHRRDGVSFIRYKRPLVSSD-KKYDFSVNYTENMQVVWALG 324 (904)
Q Consensus 277 ~nd~~l~~g~~~~G~t~i~f~R~L~t~D-~~~D~~i~~~~~~~vIwA~G 324 (904)
..++. ..+..+||.-+|+|+|||+|.| ..+|..+..++.+.|-.|+-
T Consensus 202 ~~~v~-~~~~~~dG~Wtv~~~R~L~t~~~~~~d~~~~~g~~~~~~fAvw 249 (261)
T PF09459_consen 202 RADVR-AGGKWKDGYWTVEFSRPLDTGDPSPYDVQFEPGKTYYVAFAVW 249 (261)
T ss_dssp G---E-EEEEEETTEEEEEEEEES---T-T--S----TTEEEEEEEEEE
T ss_pred cccce-eeeEECCCEEEEEEEEECCCCCCcccceeecCCCEEEEEEEEE
Confidence 45664 4457799999999999999995 23699999887888877775
No 54
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=73.86 E-value=8.7 Score=37.04 Aligned_cols=69 Identities=17% Similarity=0.037 Sum_probs=44.8
Q ss_pred ceeEEEeCceEEEEEEecCCcceEEee----cCCCCccccccceeeEecCCcCCCCCCCCCeEEEEecCCCCCCceeeee
Q 048731 414 PVLRVERGVPVKFSIQAGHDVALYITS----DILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQS 489 (904)
Q Consensus 414 p~~~~~rg~ty~f~v~~g~~~p~~it~----~~~GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~~~~~~~pd~~yy~~ 489 (904)
+.|+++.|-|.+|....+ .| =++. .|.|+-. + .++...++.||-+ .|-+.-|.|
T Consensus 15 ~~v~V~~GdTV~f~n~d~-~H--nv~~~~~~~p~g~~~---------~--------~s~~g~~~~~tF~--~~G~Y~Y~C 72 (116)
T TIGR02375 15 AYIRAAPGDTVTFVPTDK-GH--NVETIKGMIPEGAEA---------F--------KSKINEEYTVTVT--EEGVYGVKC 72 (116)
T ss_pred CEEEECCCCEEEEEECCC-Ce--eEEEccCCCcCCccc---------c--------cCCCCCEEEEEeC--CCEEEEEEc
Confidence 589999999999987544 23 1121 1111100 0 0122345677774 699999999
Q ss_pred eeccc--cceEEEeecC
Q 048731 490 LYDQK--MGWRIQVVDG 504 (904)
Q Consensus 490 ~~~~~--~g~~i~vv~~ 504 (904)
.-|.. |-.+|.|-+.
T Consensus 73 ~pH~~~GM~G~V~Vg~~ 89 (116)
T TIGR02375 73 TPHYGMGMVALIQVGDP 89 (116)
T ss_pred CCCccCCCEEEEEECCC
Confidence 99999 7788888663
No 55
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=72.63 E-value=2.9 Score=44.85 Aligned_cols=115 Identities=17% Similarity=0.149 Sum_probs=71.9
Q ss_pred hHHHHHHHHhhccceEEEEEeecccCCcccEEeeehhhhhHHHHHHHHHHhhh-hh-hCCC--ccccccchhhhHHhHHh
Q 048731 689 GFMMFLAWGILLPGGILAARYLKHVKGDGWYQIHVYLQYSGLAIVLLALLFAV-AE-LRGF--YVSSLHVKFGITATVLA 764 (904)
Q Consensus 689 G~LM~iAw~iL~P~Gil~aR~~k~~~~~~Wf~iH~~lq~~a~~l~iiG~vl~~-~~-~~g~--~~~~~H~~iGi~v~~L~ 764 (904)
-++|...|...+.-|.- --... ..=|.+|-.+|+++++.. -|.++-+ -. +... ...-.|.++=+++++++
T Consensus 30 ~v~lvl~W~~~yr~Gla--w~~~~---~~~fnlHP~lMviGfI~l-~GeAiL~YR~~r~~~k~~~KliH~~LH~~Alvl~ 103 (245)
T KOG1619|consen 30 TVVLVLYWVNTYRGGLA--WSSSP---NKEFNLHPVLMVIGFIYL-QGEAILIYRVFRYTSKKVSKLIHLGLHIIALVLA 103 (245)
T ss_pred HHHHHHHHHHHcCCccC--CCCCc---chhcCcchHHHHHHHHHh-ccceeeeeehhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 46788889988887753 21221 234789999888776442 2332221 11 1111 12467888888888877
Q ss_pred hccceeEEEecCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 048731 765 CVQPLNAFVRPKKPANGEEISSKRLIWEYLHFIVGRFAIIAGIVALFTGMKHL 817 (904)
Q Consensus 765 ~lQ~l~G~~rp~~~~~g~~~~~~R~~~~~~H~~lG~~~~iLgivni~lGl~l~ 817 (904)
++-....|-.|.... -.-+--+|-|+|..++++=.+|-..|+.-+
T Consensus 104 i~gl~avf~~hn~~~--------i~NfySLHSWlGl~~v~ly~~Q~v~GF~tf 148 (245)
T KOG1619|consen 104 IIGLCAVFDSHNLVG--------IANFYSLHSWLGLCVVILYSLQWVFGFFTF 148 (245)
T ss_pred HHHHHHHHHHhhhcC--------ccceeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665555454443321 112233899999999999999999997654
No 56
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=71.08 E-value=5.8 Score=30.35 Aligned_cols=29 Identities=28% Similarity=0.241 Sum_probs=24.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q 048731 788 RLIWEYLHFIVGRFAIIAGIVALFTGMKH 816 (904)
Q Consensus 788 R~~~~~~H~~lG~~~~iLgivni~lGl~l 816 (904)
|+.+..+|+|+|.++-++-++-+++|..+
T Consensus 1 rr~~~~~H~W~Gl~~g~~l~~~~~tG~~~ 29 (37)
T PF13706_consen 1 RRILRKLHRWLGLILGLLLFVIFLTGAVM 29 (37)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 46778899999999999888888888654
No 57
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=69.20 E-value=10 Score=35.32 Aligned_cols=68 Identities=16% Similarity=0.316 Sum_probs=36.9
Q ss_pred ceeEEEeCceEEEEEEe--cCCcceEEeecCCCCccccccceeeEecCCcCCCCCCCCCeEEEEecCCCCCCceeeeeee
Q 048731 414 PVLRVERGVPVKFSIQA--GHDVALYITSDILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSLY 491 (904)
Q Consensus 414 p~~~~~rg~ty~f~v~~--g~~~p~~it~~~~GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~~~~~~~pd~~yy~~~~ 491 (904)
.+|.|+.|+++++.+.. ...|-|.|-+ .+ .++.+ .+|+..+++++| ..|-..=|.|..
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i~~---~~------~~~~l---------~~g~~~~~~f~~--~~~G~y~~~C~~ 94 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVIPD---LG------ISKVL---------PPGETATVTFTP--LKPGEYEFYCTM 94 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEEGG---GT------EEEEE----------TT-EEEEEEEE---S-EEEEEB-SS
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEECC---Cc------eEEEE---------CCCCEEEEEEcC--CCCEEEEEEcCC
Confidence 38999999966665543 3346666655 11 11222 234667777766 468888899999
Q ss_pred ccccceEEEe
Q 048731 492 DQKMGWRIQV 501 (904)
Q Consensus 492 ~~~~g~~i~v 501 (904)
|.+|-+||.|
T Consensus 95 ~~~m~G~liV 104 (104)
T PF13473_consen 95 HPNMKGTLIV 104 (104)
T ss_dssp S-TTB-----
T ss_pred CCcceecccC
Confidence 9999999865
No 58
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=68.78 E-value=1.6 Score=47.61 Aligned_cols=85 Identities=19% Similarity=0.330 Sum_probs=0.0
Q ss_pred chhhhHHhHHhhccceeEEEecCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhcccccCCCcchhhhhH-
Q 048731 754 VKFGITATVLACVQPLNAFVRPKKPANGEEISSKRLIWEYLHFIVGRFAIIAGIVALFTGMKHLGERYGSENVHGLIWA- 832 (904)
Q Consensus 754 ~~iGi~v~~L~~lQ~l~G~~rp~~~~~g~~~~~~R~~~~~~H~~lG~~~~iLgivni~lGl~l~~~~~~~~~~~g~~~~- 832 (904)
-.+|++++++.++-++.-|+.-..-. .-.-.+|..+-. .++++|+++=.++.+.+-.. | +++.
T Consensus 105 LF~Gi~~l~l~~lLaL~vW~Ym~lLr-----~~GAs~WtiLaF---cLAF~LaivlLIIAv~L~qa-----W---fT~L~ 168 (381)
T PF05297_consen 105 LFVGIVILFLCCLLALGVWFYMWLLR-----ELGASFWTILAF---CLAFLLAIVLLIIAVLLHQA-----W---FTILV 168 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-----H---HHHHH
Confidence 46888888888877776666522111 011234543322 24455666555555544321 1 1222
Q ss_pred HHHHHHHHHhhhheeehhhhhh
Q 048731 833 LIVWFLIVALIVVYLEFREKQR 854 (904)
Q Consensus 833 ~i~wv~~~~~~~~~Le~~~~~~ 854 (904)
=..|++.++.+.+|+-++..++
T Consensus 169 dL~WL~LFlaiLIWlY~H~~~~ 190 (381)
T PF05297_consen 169 DLYWLLLFLAILIWLYVHDQRH 190 (381)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCC
Confidence 2567766666667777776653
No 59
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=68.41 E-value=1.3 Score=44.95 Aligned_cols=132 Identities=17% Similarity=0.108 Sum_probs=77.1
Q ss_pred eeehhHHHHHHHHhhccceEEEEEe---eccc--CCcccEEeeehhhhhHHHHHHHHHHhhhhh----------------
Q 048731 685 LAVHGFMMFLAWGILLPGGILAARY---LKHV--KGDGWYQIHVYLQYSGLAIVLLALLFAVAE---------------- 743 (904)
Q Consensus 685 ~~~HG~LM~iAw~iL~P~Gil~aR~---~k~~--~~~~Wf~iH~~lq~~a~~l~iiG~vl~~~~---------------- 743 (904)
...| +++++++.+++..|..+... .... .....+.+|..+-++-+++.++=++..+..
T Consensus 9 R~~H-w~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (188)
T PF00033_consen 9 RLLH-WLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIPQ 87 (188)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHH
Confidence 4567 78888888888888766421 1110 123456788877665444444433333333
Q ss_pred --hC------C-CccccccchhhhHHhHHhhccceeEEEe-----cCCCCCCccccccccchhhHHHHHHHHHHHHHHHH
Q 048731 744 --LR------G-FYVSSLHVKFGITATVLACVQPLNAFVR-----PKKPANGEEISSKRLIWEYLHFIVGRFAIIAGIVA 809 (904)
Q Consensus 744 --~~------g-~~~~~~H~~iGi~v~~L~~lQ~l~G~~r-----p~~~~~g~~~~~~R~~~~~~H~~lG~~~~iLgivn 809 (904)
.. . ...+...+..-++++.+++++++.|++. ...................+|.+.+.+++++-++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~~~~~~~~~~~~~~~~~~~~~~~~~iH~~~~~ll~~~i~~H 167 (188)
T PF00033_consen 88 YRLFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIMLWFFWWPLPPWLLPPPGLAEWARLIHFILAYLLLAFIIIH 167 (188)
T ss_dssp HHTT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC-----TTTTGGGS-HHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 1234556677777777888888888766 11111000111234566889999999999988888
Q ss_pred HHHhhhhc
Q 048731 810 LFTGMKHL 817 (904)
Q Consensus 810 i~lGl~l~ 817 (904)
++.++...
T Consensus 168 i~~a~~~~ 175 (188)
T PF00033_consen 168 IYAAIFHH 175 (188)
T ss_dssp HHHHHHBT
T ss_pred HHHHHHHh
Confidence 88877543
No 60
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=67.55 E-value=17 Score=35.19 Aligned_cols=68 Identities=22% Similarity=0.375 Sum_probs=50.3
Q ss_pred ceeEEEeCceEEEEEEecCC--cceEEeecCCCCccccccceeeEecCCcCCCCCCCCCeEEEEecCCCCCCceeeeee-
Q 048731 414 PVLRVERGVPVKFSIQAGHD--VALYITSDILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSL- 490 (904)
Q Consensus 414 p~~~~~rg~ty~f~v~~g~~--~p~~it~~~~GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~~~~~~~pd~~yy~~~- 490 (904)
++|.|.-|++++|.+..- | |-|+|-+ -|. + ..-.+|....+.++| +.|-+.+++|.
T Consensus 46 ~~l~lp~g~~v~~~ltS~-DViHsf~ip~---~~~--------k-------~d~~PG~~~~~~~~~--~~~G~y~~~C~e 104 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSE-DVIHSFWIPE---LGI--------K-------MDAIPGRTNSVTFTP--DKPGTYYGQCAE 104 (120)
T ss_dssp SEEEEETTSEEEEEEEES-SS-EEEEETT---CTE--------E-------EEEBTTCEEEEEEEE--SSSEEEEEEE-S
T ss_pred ceecccccceEeEEEEcC-Cccccccccc---cCc--------c-------cccccccceeeeeee--ccCCcEEEcCcc
Confidence 689999999999999886 5 6788732 121 1 111456778899999 45899999997
Q ss_pred ----eccccceEEEee
Q 048731 491 ----YDQKMGWRIQVV 502 (904)
Q Consensus 491 ----~~~~~g~~i~vv 502 (904)
-|..|-.+|.||
T Consensus 105 ~CG~gH~~M~~~v~VV 120 (120)
T PF00116_consen 105 YCGAGHSFMPGKVIVV 120 (120)
T ss_dssp SSSTTGGG-EEEEEEE
T ss_pred ccCcCcCCCeEEEEEC
Confidence 699999999987
No 61
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=65.76 E-value=4 Score=38.54 Aligned_cols=56 Identities=20% Similarity=0.076 Sum_probs=33.7
Q ss_pred hhhHHhHHhhccceeEEEecCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHhh
Q 048731 756 FGITATVLACVQPLNAFVRPKKPANGEEISSKRLIWEYLHFIVGRFAIIAGIVALFTGM 814 (904)
Q Consensus 756 iGi~v~~L~~lQ~l~G~~rp~~~~~g~~~~~~R~~~~~~H~~lG~~~~iLgivni~lGl 814 (904)
+|.+.++++.++.+++ .|+..-... ..........+|+++|+.+++++++....=+
T Consensus 1 ~G~~a~~~l~~~~~l~-~R~~~l~~~--~~~~~~~~~~~Hr~lg~~~~~~~~~H~~~~~ 56 (125)
T PF01794_consen 1 LGILAFALLPLVFLLG-LRNSPLARL--TGISFDRLLRFHRWLGRLAFFLALLHGVLYL 56 (125)
T ss_pred CHHHHHHHHHHHHHHH-HhhhHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666777777777766 444221100 0001112345999999999999998875444
No 62
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=61.71 E-value=12 Score=39.24 Aligned_cols=29 Identities=34% Similarity=0.409 Sum_probs=23.9
Q ss_pred CcccEEeeehhhhhHHHHHHHHHHhhhhh
Q 048731 715 GDGWYQIHVYLQYSGLAIVLLALLFAVAE 743 (904)
Q Consensus 715 ~~~Wf~iH~~lq~~a~~l~iiG~vl~~~~ 743 (904)
...|+.+|..+..++.++..++++.++.+
T Consensus 68 ~~~~l~iHv~~~~~~ya~~~ia~~~al~~ 96 (214)
T PF01578_consen 68 QSPWLYIHVPLALLGYAAFAIAALAALLY 96 (214)
T ss_pred hcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45699999999999998888888877664
No 63
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=61.69 E-value=14 Score=37.48 Aligned_cols=89 Identities=18% Similarity=0.085 Sum_probs=51.3
Q ss_pred eeehhhhhHHHHHHHHHHhhhhhhC-CCc--c--ccccchhhhHHhHHhhccceeE---------------------EEe
Q 048731 721 IHVYLQYSGLAIVLLALLFAVAELR-GFY--V--SSLHVKFGITATVLACVQPLNA---------------------FVR 774 (904)
Q Consensus 721 iH~~lq~~a~~l~iiG~vl~~~~~~-g~~--~--~~~H~~iGi~v~~L~~lQ~l~G---------------------~~r 774 (904)
.|+..-++-+++.+.|+.+-..... ... . ...|.++|++++++.++=.+.. ..+
T Consensus 9 ~HW~~a~~~i~l~~tG~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (182)
T PF01292_consen 9 LHWLNALSFIALIATGLWIHFPPPGLYFGDFGGVRNWHVIAGLLLFALLIFRLLWRWRRLFPWSDDVFFQVKNYLYFLLR 88 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccchHHhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhc
Confidence 4776666666666666655333221 111 1 5689999999998887666555 111
Q ss_pred cCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 048731 775 PKKPANGEEISSKRLIWEYLHFIVGRFAIIAGIVALFTGMKHL 817 (904)
Q Consensus 775 p~~~~~g~~~~~~R~~~~~~H~~lG~~~~iLgivni~lGl~l~ 817 (904)
.+. +....++..-+....+.+++..+.+++|+-+.
T Consensus 89 ~~~--------p~~~~~~~~~~~~~~~~~~~~~~~~iTG~~~~ 123 (182)
T PF01292_consen 89 GKP--------PPAGKYNPGQKIVHWVLYLLLLLLPITGLLLW 123 (182)
T ss_pred CCC--------CCCCcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11223344444456666777777888887764
No 64
>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function.
Probab=61.49 E-value=15 Score=34.43 Aligned_cols=31 Identities=16% Similarity=0.052 Sum_probs=25.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhhccc
Q 048731 789 LIWEYLHFIVGRFAIIAGIVALFTGMKHLGE 819 (904)
Q Consensus 789 ~~~~~~H~~lG~~~~iLgivni~lGl~l~~~ 819 (904)
+.+...|+++|++-+++..+....|+.+...
T Consensus 3 ~k~~~~HR~lGrvyv~~~~~~a~sa~~i~~~ 33 (103)
T PF10067_consen 3 RKGPRLHRWLGRVYVAAMLISALSALFIAFY 33 (103)
T ss_pred CCcccHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445699999999999999999999877643
No 65
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=61.13 E-value=19 Score=35.62 Aligned_cols=44 Identities=16% Similarity=0.317 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhcccccCCCcchhhhhHHHHHHHH
Q 048731 792 EYLHFIVGRFAIIAGIVALFTGMKHLGERYGSENVHGLIWALIVWFLI 839 (904)
Q Consensus 792 ~~~H~~lG~~~~iLgivni~lGl~l~~~~~~~~~~~g~~~~~i~wv~~ 839 (904)
-..|..+..++..|...+++.|+.....+ ..+-..|.+.+|+..
T Consensus 78 L~~Hi~LA~~~~pL~l~tl~~a~~~~~~~----Hrki~r~t~piWlyv 121 (133)
T PF04238_consen 78 LISHIILAIVALPLVLYTLYRALRGRFTR----HRKIGRWTFPIWLYV 121 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcChHH----HHHHHHHHHHHHHHH
Confidence 45899999999999999999999764211 112234667777743
No 66
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=60.17 E-value=18 Score=37.56 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=36.1
Q ss_pred EeeehhhhhHHHHHHHHHHhhhhhhCC-C--ccccccchhhhHHhHHhhccceeEEEecCC
Q 048731 720 QIHVYLQYSGLAIVLLALLFAVAELRG-F--YVSSLHVKFGITATVLACVQPLNAFVRPKK 777 (904)
Q Consensus 720 ~iH~~lq~~a~~l~iiG~vl~~~~~~g-~--~~~~~H~~iGi~v~~L~~lQ~l~G~~rp~~ 777 (904)
.+||..-++-+...++|+......... . .+...|..+|+.+++|+++-.+..+..+.+
T Consensus 14 ~lHWl~allv~~~~~~g~~~~~~~~~~~~~~~~~~~Hks~Gi~vl~L~v~Rl~wrl~~~~p 74 (181)
T COG3038 14 ALHWLMALLVIGAFALGELMGFLPRGPGLYFLLYELHKSIGILVLALMVLRLLWRLRNPAP 74 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 356654443333333333333332222 2 346899999999999999999988876654
No 67
>PF13630 SdpI: SdpI/YhfL protein family
Probab=57.16 E-value=22 Score=30.91 Aligned_cols=31 Identities=35% Similarity=0.567 Sum_probs=27.3
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 048731 787 KRLIWEYLHFIVGRFAIIAGIVALFTGMKHL 817 (904)
Q Consensus 787 ~R~~~~~~H~~lG~~~~iLgivni~lGl~l~ 817 (904)
....|+..|+..|...++.|++.+..++...
T Consensus 19 s~~~W~~a~r~~g~~~~~~Gi~~~~~~~~~~ 49 (76)
T PF13630_consen 19 SDENWKKAHRFAGKIFIIGGIVLLIIGIIIL 49 (76)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999988764
No 68
>TIGR03477 DMSO_red_II_gam DMSO reductase family type II enzyme, heme b subunit. This model represents a heme b-binding subunit, typically called the gamma subunit, of various proteins that also contain a molybdopterin subunit and an iron-sulfur protein. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=55.59 E-value=23 Score=37.59 Aligned_cols=41 Identities=20% Similarity=0.136 Sum_probs=35.2
Q ss_pred EEEEeCCEEEEEEEecCCCCCCCCCeeecCCCcEEEEEEeCC
Q 048731 284 YGHRRDGVSFIRYKRPLVSSDKKYDFSVNYTENMQVVWALGL 325 (904)
Q Consensus 284 ~g~~~~G~t~i~f~R~L~t~D~~~D~~i~~~~~~~vIwA~G~ 325 (904)
.+...||.-++.|.|||++.+. .+..+..++.+.|-+|+-.
T Consensus 144 ~a~~~~~~WtVv~~RpL~~~~~-~~~~l~~g~~~~vaFAVWd 184 (205)
T TIGR03477 144 VATYDNGEWTVVLSRPLASKGE-GLASLQAGGDSKVAFAVWN 184 (205)
T ss_pred eEEEcCCEEEEEEEEECCCCCc-ccceeccCCeEEEEEEEEc
Confidence 5677899999999999999776 7888888888999888854
No 69
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=52.62 E-value=42 Score=35.26 Aligned_cols=72 Identities=24% Similarity=0.421 Sum_probs=53.5
Q ss_pred cCceeEEEeCceEEEEEEecCC--cceEEeecCCCCccccccceeeEecCCcCCCCCCCCCeEEEEecCCCCCCceeeee
Q 048731 412 EAPVLRVERGVPVKFSIQAGHD--VALYITSDILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQS 489 (904)
Q Consensus 412 ~~p~~~~~rg~ty~f~v~~g~~--~p~~it~~~~GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~~~~~~~pd~~yy~~ 489 (904)
..++|.|..|++++|.+... | |-|+|-+ .|+ +. .-.+|....+.++|++ |-.-+.||
T Consensus 115 ~~~~l~vp~g~~v~~~~ts~-DV~Hsf~ip~--~~~---------k~-------da~PG~~~~~~~~~~~--~G~y~~~c 173 (201)
T TIGR02866 115 TVNELVVPAGTPVRLQVTSK-DVIHSFWVPE--LGG---------KI-------DAIPGQYNALWFNADE--PGVYYGYC 173 (201)
T ss_pred ccCEEEEEcCCEEEEEEEeC-chhhcccccc--cCc---------eE-------EecCCcEEEEEEEeCC--CEEEEEEe
Confidence 56799999999999999886 5 6888733 111 11 1134666778888764 77888899
Q ss_pred ee-----ccccceEEEeecC
Q 048731 490 LY-----DQKMGWRIQVVDG 504 (904)
Q Consensus 490 ~~-----~~~~g~~i~vv~~ 504 (904)
.- |.+|-.++.|++.
T Consensus 174 ~e~cG~~h~~M~~~v~v~~~ 193 (201)
T TIGR02866 174 AELCGAGHSLMLFKVVVVER 193 (201)
T ss_pred hhhCCcCccCCeEEEEEECH
Confidence 75 9999999999864
No 70
>TIGR01583 formate-DH-gamm formate dehydrogenase, gamma subunit. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model.
Probab=52.25 E-value=25 Score=37.00 Aligned_cols=29 Identities=10% Similarity=0.057 Sum_probs=25.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 048731 789 LIWEYLHFIVGRFAIIAGIVALFTGMKHL 817 (904)
Q Consensus 789 ~~~~~~H~~lG~~~~iLgivni~lGl~l~ 817 (904)
..+|...+..-.++++++++.+.+|+-++
T Consensus 102 ~kyN~~Qk~~y~~i~~~~~~~~~TGl~m~ 130 (204)
T TIGR01583 102 GKYNAGQKSWYWILVLGGFLMIITGIFMW 130 (204)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888889999999999999886
No 71
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=51.61 E-value=31 Score=33.08 Aligned_cols=87 Identities=16% Similarity=0.198 Sum_probs=52.8
Q ss_pred ceeEEEcCc-cCceeEEEeCceEEEEEEecCCcceEEeecCCCCccccccceeeEecCCcCCCCCCCCCeEEEEecCCCC
Q 048731 403 VKVFYINKK-EAPVLRVERGVPVKFSIQAGHDVALYITSDILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNT 481 (904)
Q Consensus 403 ~~~wyiN~~-~~p~~~~~rg~ty~f~v~~g~~~p~~it~~~~GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~~~~~~~ 481 (904)
..+|-+||. .-|.|.+++|.+....+..--+.|.=|. .+|-..... ...-..++++...=.+|+..+..|+++. .
T Consensus 14 ~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~~~~siH--~HG~~~~~~-~~~DG~~~~~~~~i~pG~~~~Y~~~~~~-~ 89 (117)
T PF07732_consen 14 RKVWTYNGQFPGPTIRVREGDTVRITVTNNLDEPTSIH--WHGLHQPPS-PWMDGVPGVTQCPIAPGESFTYEFTANQ-Q 89 (117)
T ss_dssp EEEEEETTBSSEEEEEEETTEEEEEEEEEESSSGBSEE--EETSBSTTG-GGGSGGTTTSGSSBSTTEEEEEEEEESS-C
T ss_pred EEEEEECCCCCCCEEEEEcCCeeEEEEEeccccccccc--cceeeeeee-eecCCcccccceeEEeecceeeeEeeec-c
Confidence 357889986 5799999999999998877655443222 122111000 0000011111111234667788999987 7
Q ss_pred CCceeeeeeecc
Q 048731 482 PDEVYYQSLYDQ 493 (904)
Q Consensus 482 pd~~yy~~~~~~ 493 (904)
|-+.+|+|-.+.
T Consensus 90 ~Gt~wYH~H~~~ 101 (117)
T PF07732_consen 90 AGTYWYHSHVHG 101 (117)
T ss_dssp SEEEEEEECSTT
T ss_pred ccceeEeeCCCc
Confidence 889999998775
No 72
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=50.65 E-value=6.1 Score=40.86 Aligned_cols=78 Identities=17% Similarity=0.250 Sum_probs=52.0
Q ss_pred HHHHHhhccceEEEEEeecccCCcccEEeeehhhhhHHHHHHHHHHhhhhhhCCC--ccccccchhhhHHhHHhhcccee
Q 048731 693 FLAWGILLPGGILAARYLKHVKGDGWYQIHVYLQYSGLAIVLLALLFAVAELRGF--YVSSLHVKFGITATVLACVQPLN 770 (904)
Q Consensus 693 ~iAw~iL~P~Gil~aR~~k~~~~~~Wf~iH~~lq~~a~~l~iiG~vl~~~~~~g~--~~~~~H~~iGi~v~~L~~lQ~l~ 770 (904)
.++|+.+.-+|-+..-+.+. ++.+..-|...-+..+.++++...+.-...++. ...+.|..+++++++++..|.+.
T Consensus 90 ll~~~~L~~lGG~~~~~~~~--~~lf~spH~~~Gl~~~~L~~~s~al~~~i~~g~~~~~R~lHi~lN~~~l~Lf~~q~it 167 (175)
T PF13301_consen 90 LLAFMGLGALGGQLGTYRQN--GKLFWSPHLWAGLAVVGLMAFSAALVPQIQKGNRPWARRLHIYLNSLALLLFAWQAIT 167 (175)
T ss_pred HHHHHHHHHHcchHHHHHcC--CCCccCchHHHHHHHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666665555443 334445588777766666666665544443332 45789999999999999999987
Q ss_pred EE
Q 048731 771 AF 772 (904)
Q Consensus 771 G~ 772 (904)
|+
T Consensus 168 G~ 169 (175)
T PF13301_consen 168 GW 169 (175)
T ss_pred HH
Confidence 74
No 73
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=50.03 E-value=50 Score=31.85 Aligned_cols=71 Identities=18% Similarity=0.227 Sum_probs=42.5
Q ss_pred ceeEEEeCceEEEEEEecCCcceEEeecCCCCccccccceeeEecCCcCCCCCCCCCeEEEEecCCCCCCceeeeeeecc
Q 048731 414 PVLRVERGVPVKFSIQAGHDVALYITSDILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSLYDQ 493 (904)
Q Consensus 414 p~~~~~rg~ty~f~v~~g~~~p~~it~~~~GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~~~~~~~pd~~yy~~~~~~ 493 (904)
++|+|+.|.|.+|.-+.. ..|==++++..+.+.. +. -...+++..++++ +.|-+..|.|..|.
T Consensus 42 ~~ltV~~GdTVtw~~~~d-~~~HnV~s~~~~~f~s----------~~--~~~~~G~t~s~Tf----~~~G~Y~Y~C~pH~ 104 (115)
T TIGR03102 42 PAIRVDPGTTVVWEWTGE-GGGHNVVSDGDGDLDE----------SE--RVSEEGTTYEHTF----EEPGIYLYVCVPHE 104 (115)
T ss_pred CEEEECCCCEEEEEECCC-CCCEEEEECCCCCccc----------cc--cccCCCCEEEEEe----cCCcEEEEEccCCC
Confidence 579999999999985431 1222334432233321 00 0011233344444 46899999999999
Q ss_pred --ccceEEEe
Q 048731 494 --KMGWRIQV 501 (904)
Q Consensus 494 --~~g~~i~v 501 (904)
.|-.+|.|
T Consensus 105 ~~gM~G~I~V 114 (115)
T TIGR03102 105 ALGMKGAVVV 114 (115)
T ss_pred CCCCEEEEEE
Confidence 78888887
No 74
>PF04526 DUF568: Protein of unknown function (DUF568); InterPro: IPR017214 This group represents an uncharacterised conserved protein.
Probab=45.70 E-value=2.7e+02 Score=26.35 Aligned_cols=77 Identities=19% Similarity=0.179 Sum_probs=50.9
Q ss_pred ccCccEEEEEEecC-CceEEEEeeecCCcc-cccCCCCCCCcCCCccccCCCCCCcccceEEEEEEEeCCEEEEEEEecC
Q 048731 223 MLGADVAMTGFKQE-GLPFVDDFYITKYSE-CVNKDGSYSGVCPDAIYEGSDSGGLVNNTRLVYGHRRDGVSFIRYKRPL 300 (904)
Q Consensus 223 M~gaDvvV~~vd~~-g~~~~~Dyy~~~~~~-c~~~~g~~~g~cpD~~~~g~~~~g~~nd~~l~~g~~~~G~t~i~f~R~L 300 (904)
|+|+-+.||+-+.+ |...+.-|.|+++.. +.. +. . .=++.-+++.+.+|.-+|-=+=+|
T Consensus 1 M~GtqALvAf~~~~~G~~~v~T~~i~sy~~~l~~------~~-l------------sf~v~~lsae~~~~~~~IfAtl~L 61 (101)
T PF04526_consen 1 MVGTQALVAFKNSNGGSVTVYTYNITSYSPSLQP------GP-L------------SFDVSDLSAEYSGGEMTIFATLKL 61 (101)
T ss_pred CCCceEEEEEeCCCCceEEEEEEeeccccccccc------cc-c------------cccccceEeEEeCCEEEEEEEEEc
Confidence 99999999999987 777788888999886 321 11 0 124445677777775444333344
Q ss_pred CCCCCCCCeeecCCCcEEEEEEeCCCCC
Q 048731 301 VSSDKKYDFSVNYTENMQVVWALGLLKP 328 (904)
Q Consensus 301 ~t~D~~~D~~i~~~~~~~vIwA~G~~~~ 328 (904)
. . ..+.+.-||-.|+.-.
T Consensus 62 p--~--------n~t~vnhVWQ~G~~v~ 79 (101)
T PF04526_consen 62 P--G--------NSTSVNHVWQVGPSVQ 79 (101)
T ss_pred C--C--------CCcEEEEEeCcCCccC
Confidence 3 1 1235788999999754
No 75
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=45.21 E-value=33 Score=33.02 Aligned_cols=53 Identities=21% Similarity=0.361 Sum_probs=36.1
Q ss_pred cccchhhhHHhHHhhccceeEEEecCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHhhh
Q 048731 751 SLHVKFGITATVLACVQPLNAFVRPKKPANGEEISSKRLIWEYLHFIVGRFAIIAGIVALFTGMK 815 (904)
Q Consensus 751 ~~H~~iGi~v~~L~~lQ~l~G~~rp~~~~~g~~~~~~R~~~~~~H~~lG~~~~iLgivni~lGl~ 815 (904)
-.|-++|.++.++.++-.+.++++|.... +..|.+++..+++..+.++.|-.+
T Consensus 29 iinliiG~vT~l~VLvtii~afvf~~~~p------------~p~~iffavcI~l~~~s~~lLI~W 81 (118)
T PF10856_consen 29 IINLIIGAVTSLFVLVTIISAFVFPQDPP------------KPLHIFFAVCILLICISAILLIFW 81 (118)
T ss_pred EEEeehHHHHHHHHHHHHhheEEecCCCC------------CceEEehHHHHHHHHHHHHhheee
Confidence 45677777777777777777777765433 226777777777777776666554
No 76
>PRK11513 cytochrome b561; Provisional
Probab=44.56 E-value=15 Score=37.93 Aligned_cols=63 Identities=21% Similarity=0.191 Sum_probs=38.3
Q ss_pred cccccchhhhHHhHHhhccceeEEEecCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHhhh
Q 048731 749 VSSLHVKFGITATVLACVQPLNAFVRPKKPANGEEISSKRLIWEYLHFIVGRFAIIAGIVALFTGMK 815 (904)
Q Consensus 749 ~~~~H~~iGi~v~~L~~lQ~l~G~~rp~~~~~g~~~~~~R~~~~~~H~~lG~~~~iLgivni~lGl~ 815 (904)
+...|..+|+++++++++-.+..+..+.+......+.-.|..-+..| .+++++-++...+|+-
T Consensus 41 ~~~~H~s~G~~vl~L~v~Rl~~r~~~~~P~~~~~~~~~~~~~A~~~H----~~LY~lli~~plsG~~ 103 (176)
T PRK11513 41 INMIHVSCGISILVLMVVRLLLRLKYPTPPIVPKPKPMMTGLAHLGH----LVIYLLFIALPVIGLV 103 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 34789999999999999999998886554321000001122234455 4455555555566654
No 77
>PF10365 DUF2436: Domain of unknown function (DUF2436); InterPro: IPR018832 Gingipains R and K are endopeptidases with specificity for arginyl and lysyl bonds, respectively. Like other cysteine peptidases, they require reducing conditions for activity. They are maximally active at approximately neutral pH. Gingipains R and K are secreted by the bacterium Porphyromonas gingivalis (Bacteroides gingivalis). The bacterium is a major pathogen in periodontal disease, and the many ways in which the activities of the gingipains may contribute to the disease processes have been reviewed []. These enzymes are also involved in the hemagglutinating activity of the organisms. This entry represents a central region found in gingipain K peptidases, active on lysyl bonds; they belong to the MEROPS peptidase family C25 (gingipain family, clan CD).
Probab=44.06 E-value=38 Score=33.59 Aligned_cols=39 Identities=21% Similarity=0.363 Sum_probs=26.6
Q ss_pred CCCCC----CCCCCCceeEEEcCc-cCc----eeEEEeCceEEEEEEe
Q 048731 392 EALHY----PNPPNPVKVFYINKK-EAP----VLRVERGVPVKFSIQA 430 (904)
Q Consensus 392 p~~~y----~~~p~~~~~wyiN~~-~~p----~~~~~rg~ty~f~v~~ 430 (904)
|++-| .+|-..++.|-+-+. .-| +...|.|+||+|+|+.
T Consensus 105 PaG~YDy~I~~P~~~~kiwIaGd~g~~~tr~dDy~fEAGKtY~ftm~~ 152 (161)
T PF10365_consen 105 PAGTYDYCIAAPQPGGKIWIAGDGGDGPTRGDDYVFEAGKTYRFTMKR 152 (161)
T ss_pred cCceeEEEEecCCCCCeEEEecCCCCCCccccceEEecCCEEEEEEEe
Confidence 56655 344345777777554 334 7789999999998853
No 78
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=42.40 E-value=24 Score=36.81 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhcc
Q 048731 792 EYLHFIVGRFAIIAGIVALFTGMKHLG 818 (904)
Q Consensus 792 ~~~H~~lG~~~~iLgivni~lGl~l~~ 818 (904)
|..-++.-.+++++.++.+++|+-+..
T Consensus 113 n~~~k~~~~~l~~~~~~~~lTG~~~~~ 139 (211)
T TIGR02125 113 NPLQFVAYFGFIVLILFMILTGLALYY 139 (211)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566677777788889999999987753
No 79
>PRK10179 formate dehydrogenase-N subunit gamma; Provisional
Probab=42.09 E-value=43 Score=35.72 Aligned_cols=30 Identities=13% Similarity=-0.097 Sum_probs=26.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhhcc
Q 048731 789 LIWEYLHFIVGRFAIIAGIVALFTGMKHLG 818 (904)
Q Consensus 789 ~~~~~~H~~lG~~~~iLgivni~lGl~l~~ 818 (904)
..+|...+....++++++++.+++|+-++.
T Consensus 107 gk~N~~QKl~y~~i~~~~~~~i~TGl~l~~ 136 (217)
T PRK10179 107 GKYNAGQKMMFWSIMSMIFVLLVTGVIIWR 136 (217)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999999998863
No 80
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=41.98 E-value=60 Score=31.95 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=21.4
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhh
Q 048731 787 KRLIWEYLHFIVGRFAIIAGIVALFTGM 814 (904)
Q Consensus 787 ~R~~~~~~H~~lG~~~~iLgivni~lGl 814 (904)
.++.+..+..+.||.++.+=+..+.++.
T Consensus 57 i~~~~~FL~~~~GRGlfyif~G~l~~~~ 84 (136)
T PF08507_consen 57 IRKYFGFLYSYIGRGLFYIFLGTLCLGQ 84 (136)
T ss_pred HHHhHhHHHhHHHHHHHHHHHHHHHHhh
Confidence 5677888999999998876665555555
No 81
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=40.87 E-value=1e+02 Score=30.39 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=38.3
Q ss_pred ceeEEEeCceEEEEEEecCCcceEEeecC-CCCccccccceeeEecCCcCCCCCCCCCeEEEEecCCCCCCceeeeeeec
Q 048731 414 PVLRVERGVPVKFSIQAGHDVALYITSDI-LGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSLYD 492 (904)
Q Consensus 414 p~~~~~rg~ty~f~v~~g~~~p~~it~~~-~GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~~~~~~~pd~~yy~~~~~ 492 (904)
.+|++.-|.|.+|.-...-.|=.-..+++ -.|-+.+ .+..++..+.+|+ +|-...|.|..|
T Consensus 54 A~v~v~pGDTVtw~~~d~~~Hnv~~~~~~~~~g~~~~--------------~~~~~~s~~~Tfe----~~G~Y~Y~C~PH 115 (128)
T COG3794 54 AEVTVKPGDTVTWVNTDSVGHNVTAVGGMDPEGSGTL--------------KAGINESFTHTFE----TPGEYTYYCTPH 115 (128)
T ss_pred cEEEECCCCEEEEEECCCCCceEEEeCCCCccccccc--------------ccCCCcceEEEec----ccceEEEEeccC
Confidence 48999999999998766534422222222 0111111 1111244444443 388899999999
Q ss_pred cccceE
Q 048731 493 QKMGWR 498 (904)
Q Consensus 493 ~~~g~~ 498 (904)
+.||=|
T Consensus 116 ~~~gM~ 121 (128)
T COG3794 116 PGMGMK 121 (128)
T ss_pred CCCCcE
Confidence 955544
No 82
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=40.79 E-value=16 Score=36.97 Aligned_cols=131 Identities=17% Similarity=0.140 Sum_probs=69.5
Q ss_pred eeehhHHHHHHHHhhccceEEEEEeecccC-Cccc--EEeeehhhhhHHHHHHHHHHhh------------------hh-
Q 048731 685 LAVHGFMMFLAWGILLPGGILAARYLKHVK-GDGW--YQIHVYLQYSGLAIVLLALLFA------------------VA- 742 (904)
Q Consensus 685 ~~~HG~LM~iAw~iL~P~Gil~aR~~k~~~-~~~W--f~iH~~lq~~a~~l~iiG~vl~------------------~~- 742 (904)
...| +++++++.+++-.|..+....+... ...+ +.+|..+-.+-.++.++-+... ..
T Consensus 7 r~~H-W~~a~~~i~l~~tG~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (182)
T PF01292_consen 7 RILH-WLNALSFIALIATGLWIHFPPPGLYFGDFGGVRNWHVIAGLLLFALLIFRLLWRWRRLFPWSDDVFFQVKNYLYF 85 (182)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHhcccccccccccchHHhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHH
Confidence 4567 7777888888777875533322211 1111 5678875554333333222222 00
Q ss_pred hhCCC----c-cccccchhhhHHhHHhhccceeEEEecCC--CCCCc--cccccccchhhHHHHHHHHHHHHHHHHHHHh
Q 048731 743 ELRGF----Y-VSSLHVKFGITATVLACVQPLNAFVRPKK--PANGE--EISSKRLIWEYLHFIVGRFAIIAGIVALFTG 813 (904)
Q Consensus 743 ~~~g~----~-~~~~H~~iGi~v~~L~~lQ~l~G~~rp~~--~~~g~--~~~~~R~~~~~~H~~lG~~~~iLgivni~lG 813 (904)
..++. . .+..-...-.++++++.++++.|++.-.. ..-+. ...........+|.+++.+++++-++.++..
T Consensus 86 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iTG~~~~~~~~~~~~~~~~~~~~~~~~~~vH~~~a~~~i~~i~~Hv~~a 165 (182)
T PF01292_consen 86 LLRGKPPPAGKYNPGQKIVHWVLYLLLLLLPITGLLLWFASAEGFPLFAASPGGAQIARSVHFFLAWLLIAFIILHVYAA 165 (182)
T ss_pred HhcCCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111 1 12222334666777788888888653110 00000 0013456678899999999888888887777
Q ss_pred hhh
Q 048731 814 MKH 816 (904)
Q Consensus 814 l~l 816 (904)
+..
T Consensus 166 ~~~ 168 (182)
T PF01292_consen 166 LFH 168 (182)
T ss_pred HHH
Confidence 654
No 83
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=39.53 E-value=49 Score=23.76 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=20.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhh
Q 048731 791 WEYLHFIVGRFAIIAGIVALFTGMKH 816 (904)
Q Consensus 791 ~~~~H~~lG~~~~iLgivni~lGl~l 816 (904)
++.+|+|++-+..++-++-..+|+.+
T Consensus 1 ~~~LH~w~~~i~al~~lv~~iTGl~l 26 (27)
T PF03929_consen 1 FNDLHKWFGDIFALFMLVFAITGLIL 26 (27)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35689999988888888888888754
No 84
>COG2717 Predicted membrane protein [Function unknown]
Probab=39.11 E-value=20 Score=38.08 Aligned_cols=110 Identities=19% Similarity=0.160 Sum_probs=61.6
Q ss_pred HHHHHhhccceEEEEEeecccCCcccEEeeehhhhhHHHHHHHHHHhhhhhhCCCc--------cccccchhhhHHhHHh
Q 048731 693 FLAWGILLPGGILAARYLKHVKGDGWYQIHVYLQYSGLAIVLLALLFAVAELRGFY--------VSSLHVKFGITATVLA 764 (904)
Q Consensus 693 ~iAw~iL~P~Gil~aR~~k~~~~~~Wf~iH~~lq~~a~~l~iiG~vl~~~~~~g~~--------~~~~H~~iGi~v~~L~ 764 (904)
.+.+.+++=.....+|..+ .+.+..+-+.+-+.+++.++.-+..-+...-++. ...+=-.+|++.++++
T Consensus 51 al~fLl~~la~tp~~~~~~---~~~l~~~Rr~LGl~af~~~~lH~~~Y~~~~l~~~~~~~~~d~~~rpyitiG~iaflll 127 (209)
T COG2717 51 ALIFLLVTLAVTPLARLLK---QPKLIRIRRALGLWAFFYALLHFTAYLVLDLGLDLALLGLDLLKRPYITIGMIAFLLL 127 (209)
T ss_pred HHHHHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhhHHHHHhHHHHHHHHHHHHH
Confidence 3334444433444455544 3566667777777777777777654433222221 1233455677666666
Q ss_pred hccceeEEEecCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHhh
Q 048731 765 CVQPLNAFVRPKKPANGEEISSKRLIWEYLHFIVGRFAIIAGIVALFTGM 814 (904)
Q Consensus 765 ~lQ~l~G~~rp~~~~~g~~~~~~R~~~~~~H~~lG~~~~iLgivni~lGl 814 (904)
+.-.+..+=. . +.+.-+.|+.+|++ ++.+++||.+...++.
T Consensus 128 ~pLalTS~k~----~----~rrlG~rW~~LHrL-vYl~~~L~~lH~~~s~ 168 (209)
T COG2717 128 IPLALTSFKW----V----RRRLGKRWKKLHRL-VYLALILGALHYLWSV 168 (209)
T ss_pred HHHHHHhhHH----H----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 5433322100 0 00122679999995 6889999998888843
No 85
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=37.95 E-value=10 Score=35.35 Aligned_cols=24 Identities=33% Similarity=0.283 Sum_probs=14.0
Q ss_pred CCCCeehhHHHHHHHhhccCCCCc
Q 048731 5 IKPPILLLLVLLCFLTLSCSADPV 28 (904)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~ 28 (904)
..|..|||.+||++|+|+++..++
T Consensus 2 aSK~~llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 2 ASKAFLLLGLLLAALLLISSEVAA 25 (95)
T ss_pred chhHHHHHHHHHHHHHHHHhhhhh
Confidence 345566776777666655544443
No 86
>PF14387 DUF4418: Domain of unknown function (DUF4418)
Probab=37.18 E-value=84 Score=30.77 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=16.9
Q ss_pred CcccEEeeehhhhh---HHHHHHHHHHhhhh
Q 048731 715 GDGWYQIHVYLQYS---GLAIVLLALLFAVA 742 (904)
Q Consensus 715 ~~~Wf~iH~~lq~~---a~~l~iiG~vl~~~ 742 (904)
+..|.+-||.-|.. +.+++++|++..+.
T Consensus 28 ~g~~M~Ch~tg~a~~~ig~vi~~~~li~~~~ 58 (124)
T PF14387_consen 28 DGGHMKCHWTGQAVTGIGAVIAVLSLIMLFV 58 (124)
T ss_pred CCCeeeehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 45689999988774 33444444444443
No 87
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=35.46 E-value=1.8e+02 Score=32.78 Aligned_cols=85 Identities=15% Similarity=0.212 Sum_probs=54.4
Q ss_pred eeEEEcCc-cCceeEEEeCceEEEEEEec----CCcceEEeecCCCCccccccceeeEecCCc-CCCCCCCCCeEEEEec
Q 048731 404 KVFYINKK-EAPVLRVERGVPVKFSIQAG----HDVALYITSDILGGNASLRNVTETIYAGGP-EAEGVKASPMELVWAP 477 (904)
Q Consensus 404 ~~wyiN~~-~~p~~~~~rg~ty~f~v~~g----~~~p~~it~~~~GG~~~~~~~~~~~~ag~~-~~~g~~~~~~~~~~~~ 477 (904)
.+|-+||. .-|.|.+++|.+....+... ..|++-+.--. . -.|++ ...=.+|+..+..|++
T Consensus 48 ~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~---------~dg~~~~~~I~PG~t~ty~F~~ 114 (311)
T TIGR02376 48 QAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----G---------ALGGAALTQVNPGETATLRFKA 114 (311)
T ss_pred EEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----c---------cCCCCcceeECCCCeEEEEEEc
Confidence 47889998 45899999999999877665 23454443210 0 00111 0001356788899998
Q ss_pred CCCCCCceeeeeeecc--------ccceEEEeec
Q 048731 478 DRNTPDEVYYQSLYDQ--------KMGWRIQVVD 503 (904)
Q Consensus 478 ~~~~pd~~yy~~~~~~--------~~g~~i~vv~ 503 (904)
+ .|-+..|+|-.|. .|-..|.|-+
T Consensus 115 ~--~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~ 146 (311)
T TIGR02376 115 T--RPGAFVYHCAPPGMVPWHVVSGMNGAIMVLP 146 (311)
T ss_pred C--CCEEEEEEcCCCCchhHHhhcCcceEEEeec
Confidence 5 5999999998653 4556666654
No 88
>TIGR03144 cytochr_II_ccsB cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction.
Probab=34.81 E-value=66 Score=34.84 Aligned_cols=26 Identities=27% Similarity=0.542 Sum_probs=14.9
Q ss_pred ccEEeeehhhhhHHHHHHHHHHhhhh
Q 048731 717 GWYQIHVYLQYSGLAIVLLALLFAVA 742 (904)
Q Consensus 717 ~Wf~iH~~lq~~a~~l~iiG~vl~~~ 742 (904)
.|+.+|..+-+++..+..++++.++.
T Consensus 91 ~wl~iHv~~a~l~ya~~~la~~~a~l 116 (243)
T TIGR03144 91 NWLMMHVSVMILSYAALLVGSLLSIA 116 (243)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666555555555443
No 89
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=34.74 E-value=47 Score=41.76 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhh
Q 048731 791 WEYLHFIVGRFAIIAGIVALFTGM 814 (904)
Q Consensus 791 ~~~~H~~lG~~~~iLgivni~lGl 814 (904)
++.+|+|+|+++++++++..+.-+
T Consensus 191 ~i~fHrWlGr~~~llallH~i~~~ 214 (722)
T PLN02844 191 SVRYHVWLGTSMIFFATVHGASTL 214 (722)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999887544
No 90
>COG3462 Predicted membrane protein [Function unknown]
Probab=34.21 E-value=44 Score=31.79 Aligned_cols=27 Identities=19% Similarity=0.387 Sum_probs=18.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhh
Q 048731 790 IWEYLHFIVGRFAIIAGIVALFTGMKH 816 (904)
Q Consensus 790 ~~~~~H~~lG~~~~iLgivni~lGl~l 816 (904)
+-|.+-...|.++++..++=+..|+.-
T Consensus 5 ven~~w~ligliavi~~v~li~~~~~g 31 (117)
T COG3462 5 VENFAWLLIGLIAVIAVVGLIPSGFHG 31 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 345566677888877777666666644
No 91
>PRK10263 DNA translocase FtsK; Provisional
Probab=32.41 E-value=75 Score=42.27 Aligned_cols=8 Identities=50% Similarity=0.953 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 048731 797 IVGRFAII 804 (904)
Q Consensus 797 ~lG~~~~i 804 (904)
++|.++++
T Consensus 116 liGlLLLL 123 (1355)
T PRK10263 116 IIGVLALI 123 (1355)
T ss_pred HHHHHHHH
Confidence 44444433
No 92
>PF10951 DUF2776: Protein of unknown function (DUF2776); InterPro: IPR021240 This bacterial family of proteins has no known function.
Probab=32.32 E-value=59 Score=36.14 Aligned_cols=85 Identities=18% Similarity=0.329 Sum_probs=51.8
Q ss_pred ehhhhhHHHHHHHHHHhhhhhhC--CC---ccccccchhhhHHhHHhhccceeEEEecCCCCCCccccccccchhhHHHH
Q 048731 723 VYLQYSGLAIVLLALLFAVAELR--GF---YVSSLHVKFGITATVLACVQPLNAFVRPKKPANGEEISSKRLIWEYLHFI 797 (904)
Q Consensus 723 ~~lq~~a~~l~iiG~vl~~~~~~--g~---~~~~~H~~iGi~v~~L~~lQ~l~G~~rp~~~~~g~~~~~~R~~~~~~H~~ 797 (904)
..|..+..+++++|++-++...+ +. ++-.-|..+|+...+-.++-.+.-+.|..++. -..+-|+.|-+
T Consensus 155 ~~Liav~~~~~li~~iw~~~Ll~~~~~~p~y~VAGhVm~Gla~iCtsLIaLVAtI~RQirN~---ys~~Er~~W~~---- 227 (347)
T PF10951_consen 155 NILIAVPILCALIGWIWAIVLLSSSDEHPAYFVAGHVMFGLACICTSLIALVATIARQIRNT---YSEKERWKWPK---- 227 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccceehhHHHhhHHHHHHHHHHHHHHHHHHHhcc---ccHHHhhhhHH----
Confidence 44556777888888887776432 22 24456888888888766666555565554432 01134555544
Q ss_pred HHHHHHHHHHHHHHHhhhhc
Q 048731 798 VGRFAIIAGIVALFTGMKHL 817 (904)
Q Consensus 798 lG~~~~iLgivni~lGl~l~ 817 (904)
.++++|-+++..|+...
T Consensus 228 ---lVl~mGsi~~l~Gl~vl 244 (347)
T PF10951_consen 228 ---LVLVMGSISILWGLYVL 244 (347)
T ss_pred ---HHHHHhhHHHHhhhheE
Confidence 45666677777776554
No 93
>PF10361 DUF2434: Protein of unknown function (DUF2434); InterPro: IPR018830 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=32.28 E-value=42 Score=37.24 Aligned_cols=62 Identities=8% Similarity=0.066 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhcccccCCCcchhhhhHHHHHHHHHHhhhheeehhhhhhh
Q 048731 792 EYLHFIVGRFAIIAGIVALFTGMKHLGERYGSENVHGLIWALIVWFLIVALIVVYLEFREKQRR 855 (904)
Q Consensus 792 ~~~H~~lG~~~~iLgivni~lGl~l~~~~~~~~~~~g~~~~~i~wv~~~~~~~~~Le~~~~~~r 855 (904)
...-|+...++.++|++.++..++.-..-+.. .. -++-.+..++...+.+.+.+|..+.|-.
T Consensus 87 RRwqWyW~~fv~a~~~iS~f~~IDVDR~yl~~-~p-iil~sfF~~l~~~~~lA~vWE~VRhWGS 148 (296)
T PF10361_consen 87 RRWQWYWMLFVCACGLISLFMSIDVDRYYLQG-LP-IILQSFFWYLMQPGTLAAVWEAVRHWGS 148 (296)
T ss_pred hhHHHHHHHHHHHHHHHhhheeeeecHHhccc-cc-HHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 33556678888889999999988764321111 11 0111222233445566678888887643
No 94
>PLN02292 ferric-chelate reductase
Probab=32.26 E-value=63 Score=40.50 Aligned_cols=24 Identities=8% Similarity=-0.100 Sum_probs=19.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHh
Q 048731 790 IWEYLHFIVGRFAIIAGIVALFTG 813 (904)
Q Consensus 790 ~~~~~H~~lG~~~~iLgivni~lG 813 (904)
-++.+|+|+||++++++++..+.=
T Consensus 204 ~f~~yHRWlGrii~ll~~lH~i~y 227 (702)
T PLN02292 204 SSIKYHIWLGHLVMTLFTSHGLCY 227 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999998875443
No 95
>PLN02631 ferric-chelate reductase
Probab=30.15 E-value=86 Score=39.35 Aligned_cols=25 Identities=12% Similarity=-0.010 Sum_probs=20.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhh
Q 048731 790 IWEYLHFIVGRFAIIAGIVALFTGM 814 (904)
Q Consensus 790 ~~~~~H~~lG~~~~iLgivni~lGl 814 (904)
.++.+|+|+|+++++++++..+.=+
T Consensus 187 ~~i~yHRWlGri~~~la~iH~i~y~ 211 (699)
T PLN02631 187 SSIKYHIWLGHVSNFLFLVHTVVFL 211 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999998866554
No 96
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=29.08 E-value=85 Score=30.34 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcc
Q 048731 793 YLHFIVGRFAIIAGIVALFTGMKHLG 818 (904)
Q Consensus 793 ~~H~~lG~~~~iLgivni~lGl~l~~ 818 (904)
|==.+++.+++++|.+-+++|+.+.-
T Consensus 41 wK~I~la~~Lli~G~~li~~g~l~~~ 66 (115)
T PF05915_consen 41 WKSIALAVFLLIFGTVLIIIGLLLFF 66 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33467888899999999999976653
No 97
>PF00868 Transglut_N: Transglutaminase family; InterPro: IPR001102 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) (TGase) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ]. Transglutaminases are widely distributed in various organs, tissues and body fluids. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. There are commonly three domains: N-terminal, middle (IPR013808 from INTERPRO) and C-terminal (IPR013807 from INTERPRO). This entry represents the N-terminal domain found in transglutaminases.; GO: 0018149 peptide cross-linking; PDB: 1L9N_B 1NUF_A 1NUD_A 1NUG_B 1L9M_A 1KV3_C 3S3S_A 2Q3Z_A 3LY6_A 3S3P_A ....
Probab=28.93 E-value=53 Score=31.68 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=17.6
Q ss_pred CccCceeEEEeCceEEEEEEec
Q 048731 410 KKEAPVLRVERGVPVKFSIQAG 431 (904)
Q Consensus 410 ~~~~p~~~~~rg~ty~f~v~~g 431 (904)
.++.+.|-|+||++|++.++=-
T Consensus 21 ~y~~~~LVVRRGQ~F~i~l~f~ 42 (118)
T PF00868_consen 21 EYESPRLVVRRGQPFTITLRFN 42 (118)
T ss_dssp TTSSSSEEEETTSEEEEEEEES
T ss_pred ccCCCCEEEECCCEEEEEEEEc
Confidence 3456899999999999988543
No 98
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=28.45 E-value=1.9e+02 Score=28.12 Aligned_cols=52 Identities=17% Similarity=0.171 Sum_probs=32.6
Q ss_pred EeeehhhhhHHHHHHHHHHhhhhhhCCCccccccchhhhHHhHHhhccceeEE
Q 048731 720 QIHVYLQYSGLAIVLLALLFAVAELRGFYVSSLHVKFGITATVLACVQPLNAF 772 (904)
Q Consensus 720 ~iH~~lq~~a~~l~iiG~vl~~~~~~g~~~~~~H~~iGi~v~~L~~lQ~l~G~ 772 (904)
.+|+++..++.++++++++.+++.-. ....-.|-.+++.++...+.-.++-+
T Consensus 29 iinliiG~vT~l~VLvtii~afvf~~-~~p~p~~iffavcI~l~~~s~~lLI~ 80 (118)
T PF10856_consen 29 IINLIIGAVTSLFVLVTIISAFVFPQ-DPPKPLHIFFAVCILLICISAILLIF 80 (118)
T ss_pred EEEeehHHHHHHHHHHHHhheEEecC-CCCCceEEehHHHHHHHHHHHHhhee
Confidence 57888888888888887777776422 12334566666666665555554443
No 99
>PF15102 TMEM154: TMEM154 protein family
Probab=28.09 E-value=27 Score=35.02 Aligned_cols=14 Identities=29% Similarity=0.475 Sum_probs=10.2
Q ss_pred ccccCceEEEeecC
Q 048731 889 SLQRGMMEVQLEPL 902 (904)
Q Consensus 889 ~~~~~~~~~~~~~~ 902 (904)
..-+..||+.+|-|
T Consensus 117 edtpsvmeiEmeel 130 (146)
T PF15102_consen 117 EDTPSVMEIEMEEL 130 (146)
T ss_pred cCCcchhhhhHHHH
Confidence 55677888887765
No 100
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=27.56 E-value=95 Score=28.07 Aligned_cols=30 Identities=33% Similarity=0.456 Sum_probs=24.8
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q 048731 786 SKRLIWEYLHFIVGRFAIIAGIVALFTGMKH 816 (904)
Q Consensus 786 ~~R~~~~~~H~~lG~~~~iLgivni~lGl~l 816 (904)
+.|+ +.-.|+.+|..+.++-.+=+++|+.+
T Consensus 56 ~~r~-~~dlH~~~G~~~~~~ll~~a~TG~~~ 85 (88)
T PF13703_consen 56 SKRR-WFDLHRVLGLWFLPFLLVIALTGLFF 85 (88)
T ss_pred ccCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455 66699999999999999999998754
No 101
>PF08733 PalH: PalH/RIM21; InterPro: IPR014844 PalH (also known as RIM21) is a transmembrane protein required for proteolytic cleavage of Rim101/PacC transcription factors which are activated by C-terminal proteolytic processing. Rim101/PacC family proteins play a key role in pH-dependent responses and PalH has been implicated as a pH sensor [].
Probab=26.03 E-value=2.3e+02 Score=32.55 Aligned_cols=43 Identities=14% Similarity=0.032 Sum_probs=24.6
Q ss_pred eehhhhhHHHHHHHHHHhhhhhh-CCCccccccchhhhHHhHHh
Q 048731 722 HVYLQYSGLAIVLLALLFAVAEL-RGFYVSSLHVKFGITATVLA 764 (904)
Q Consensus 722 H~~lq~~a~~l~iiG~vl~~~~~-~g~~~~~~H~~iGi~v~~L~ 764 (904)
.+++.+++.++.-+..+-.++.. ...+......++|++++++-
T Consensus 163 ~~v~~lis~~~l~l~qvqiv~rlF~R~~eK~~i~~vG~~L~i~~ 206 (348)
T PF08733_consen 163 YRVIDLISNFFLQLAQVQIVIRLFPRQKEKRIIFWVGFILIILD 206 (348)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHhhcccCcEEEEeeHHHHHHHHH
Confidence 45566666666666665444432 33334556777887777643
No 102
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=25.04 E-value=1.1e+02 Score=32.48 Aligned_cols=29 Identities=21% Similarity=0.074 Sum_probs=23.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 048731 789 LIWEYLHFIVGRFAIIAGIVALFTGMKHL 817 (904)
Q Consensus 789 ~~~~~~H~~lG~~~~iLgivni~lGl~l~ 817 (904)
..+|...+..-.++++++++.+++|+-+.
T Consensus 105 ~kyN~~qk~~y~~~~~~~~~~~iTGl~l~ 133 (211)
T PRK10639 105 GRYNFGQKCVFWAAIIFLVLLLVSGVIIW 133 (211)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688888888888888889999999875
No 103
>COG4329 Predicted membrane protein [Function unknown]
Probab=24.95 E-value=1.3e+02 Score=29.72 Aligned_cols=84 Identities=11% Similarity=0.121 Sum_probs=46.5
Q ss_pred hhhhHHHHHHHHHHhhhhhhCCC-ccccccchhhhHHhHHhhccceeEEEecCCCCCCcc-ccccccchhhHHHHHHHHH
Q 048731 725 LQYSGLAIVLLALLFAVAELRGF-YVSSLHVKFGITATVLACVQPLNAFVRPKKPANGEE-ISSKRLIWEYLHFIVGRFA 802 (904)
Q Consensus 725 lq~~a~~l~iiG~vl~~~~~~g~-~~~~~H~~iGi~v~~L~~lQ~l~G~~rp~~~~~g~~-~~~~R~~~~~~H~~lG~~~ 802 (904)
......+++++|+++-.-..+.. -.-++|-+.|-.++.+..+|..-|.+.|..-.-... ....|..|...-..+|.++
T Consensus 64 FHa~~wv~tv~Gl~~lwr~grr~~~~wSa~~~~G~ll~GaGlFnl~eGtinHqilgiHhv~~~v~~i~wD~gflvlgalm 143 (160)
T COG4329 64 FHAFSWVATVGGLFMLWRLGRRKTFQWSAKYWWGGLLLGAGLFNLYEGTINHQILGIHHVRYVVNVIVWDFGFLVLGALM 143 (160)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcceeehhhhhhhhhhcccchheeehhhhhhhheeeeecccceeeeehhHHHHHHHHH
Confidence 34456666777765433222221 234788888888888888888877654432110000 0134566665555555555
Q ss_pred HHHHHH
Q 048731 803 IIAGIV 808 (904)
Q Consensus 803 ~iLgiv 808 (904)
+++|++
T Consensus 144 viiG~v 149 (160)
T COG4329 144 VIIGLV 149 (160)
T ss_pred HHHHHH
Confidence 555544
No 104
>TIGR01191 ccmC heme exporter protein CcmC. This model describes the cyt c biogenesis protein encoded by ccmC in bacteria. It must be noted an arabidopsis, a tritcum and a piscum plant proteins were recognizable in the clade. Quite likely they are of organellar origin. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes, ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in the heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=24.63 E-value=1.9e+02 Score=30.17 Aligned_cols=27 Identities=7% Similarity=0.156 Sum_probs=20.9
Q ss_pred ccEEeeehhhhhHHHHHHHHHHhhhhh
Q 048731 717 GWYQIHVYLQYSGLAIVLLALLFAVAE 743 (904)
Q Consensus 717 ~Wf~iH~~lq~~a~~l~iiG~vl~~~~ 743 (904)
+++++|+....+++.+..++++.++.+
T Consensus 11 ri~yiHVp~a~~~~~~~~~~~~~s~~y 37 (184)
T TIGR01191 11 RIMYVHVPAAWMAIGVYIMMAIASFIF 37 (184)
T ss_pred eehhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899998888888777777776654
No 105
>KOG4671 consensus Brain cell membrane protein 1 (BCMP1) [General function prediction only]
Probab=24.34 E-value=82 Score=32.76 Aligned_cols=62 Identities=15% Similarity=0.107 Sum_probs=41.6
Q ss_pred cEEeeehhhhhHHHHHHHHHHhhhhhhCCCccccccchhhhHHhHHhhccceeEEEecCCCC
Q 048731 718 WYQIHVYLQYSGLAIVLLALLFAVAELRGFYVSSLHVKFGITATVLACVQPLNAFVRPKKPA 779 (904)
Q Consensus 718 Wf~iH~~lq~~a~~l~iiG~vl~~~~~~g~~~~~~H~~iGi~v~~L~~lQ~l~G~~rp~~~~ 779 (904)
|++.-..+-+.+.++.++.|++++...........-.++|.+++.+.++|...-++.|.++.
T Consensus 79 ~~~aaAAmL~~g~~i~~I~filgl~~~cv~~~~~fyRvi~~~l~laaV~qi~sLvIyPVk~~ 140 (201)
T KOG4671|consen 79 GGRAAAAMLFIGAAILVICFILGLFALCVPLKLVFYRVIGGLLFLAAVLQIISLVIYPVKYT 140 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeeeHHHHHHHHHHHHHhheeEEeeeeee
Confidence 33333344444555666677777765543333456778999999999999988888887664
No 106
>TIGR03154 sulfolob_CbsA cytochrome b558/566, subunit A. Members of this protein family are CbsA, one subunit of a highly glycosylated, heterodimeric, mono-heme cytochrome b558/566, found in Sulfolobus acidocaldarius and several other members of the Sulfolobales, a branch of the Crenarchaeota.
Probab=23.95 E-value=4.1e+02 Score=30.42 Aligned_cols=40 Identities=15% Similarity=0.232 Sum_probs=30.9
Q ss_pred EEEEeCCEEEEEEEecCCCCCC--CCCeeecCCCcEEEEEEe
Q 048731 284 YGHRRDGVSFIRYKRPLVSSDK--KYDFSVNYTENMQVVWAL 323 (904)
Q Consensus 284 ~g~~~~G~t~i~f~R~L~t~D~--~~D~~i~~~~~~~vIwA~ 323 (904)
.+..+||+-+|+|.|||+.--. ..--.|..+...+|-+|.
T Consensus 348 gAtY~nG~WTVefaRPL~vp~~y~~~mpnitvg~tyyVAFAV 389 (465)
T TIGR03154 348 GATYENGYWTVEFARPLAVPLDYAPWMPNITVGKTYYVAFAV 389 (465)
T ss_pred ccEEeCCeEEEEEEeccCCCccccccccccccCCeEEEEEEE
Confidence 5788999999999999997441 133467778888888887
No 107
>PF14800 DUF4481: Domain of unknown function (DUF4481)
Probab=23.55 E-value=1.3e+02 Score=33.74 Aligned_cols=85 Identities=14% Similarity=0.215 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhcccccCCCcchhhhhHHHHHHHHHHhhhheeehhhhhh------hhcc---ccCC
Q 048731 792 EYLHFIVGRFAIIAGIVALFTGMKHLGERYGSENVHGLIWALIVWFLIVALIVVYLEFREKQR------RRER---IFGR 862 (904)
Q Consensus 792 ~~~H~~lG~~~~iLgivni~lGl~l~~~~~~~~~~~g~~~~~i~wv~~~~~~~~~Le~~~~~~------r~~~---~~~~ 862 (904)
.+.|..+-.++++.-|++++.++.++.. +.-|.. .+..-.+.+++.+.+.+++.++++|. |-.+ ...|
T Consensus 63 ~~fr~~~a~I~yivlw~~l~Stl~l~sl--g~~wv~-~Llv~l~ai~lt~~l~lv~~~~~rKlN~n~D~rLa~vN~~L~r 139 (308)
T PF14800_consen 63 RYFRLLVAVIFYIVLWANLYSTLQLFSL--GSHWVG-WLLVNLAAIFLTMALILVFMRHQRKLNMNTDVRLAAVNEALLR 139 (308)
T ss_pred hHHHHHHHHHHHHHHHHHHHccchhhhc--ccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Confidence 4578889999999999999999988842 332221 11111222222233334444444442 1111 3337
Q ss_pred cceecCCcccCCcccccCCC
Q 048731 863 SNWVLGNLEEDDSTDLLSPT 882 (904)
Q Consensus 863 ~~~~lg~~~~dd~~~~~~~~ 882 (904)
.+.+||- +|+.+..+..
T Consensus 140 HkiLLGv---~D~v~~c~~~ 156 (308)
T PF14800_consen 140 HKILLGV---TDRVEGCCHK 156 (308)
T ss_pred hheEEEe---ccccccccce
Confidence 8888884 6777766653
No 108
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=22.80 E-value=1.1e+02 Score=35.07 Aligned_cols=65 Identities=15% Similarity=0.146 Sum_probs=29.1
Q ss_pred HhhccceEEEEEeecccCCcccEEeeehhhhhHHHHHHHHHHhhhhhhCCCccccccchhhhHHhHHhh
Q 048731 697 GILLPGGILAARYLKHVKGDGWYQIHVYLQYSGLAIVLLALLFAVAELRGFYVSSLHVKFGITATVLAC 765 (904)
Q Consensus 697 ~iL~P~Gil~aR~~k~~~~~~Wf~iH~~lq~~a~~l~iiG~vl~~~~~~g~~~~~~H~~iGi~v~~L~~ 765 (904)
.++-|-|+....| +. +++.=-++|..+..+..+++.+-++..+..... ....-..+|-+++++.+
T Consensus 103 ~l~rp~Gl~~~HF-~w-~~~~~~~~r~~l~~~~~~~~pl~~~~~~~~~~~--~~~~~d~LGrl~~ii~~ 167 (340)
T PF12794_consen 103 RLLRPNGLAERHF-GW-PKERVQRLRRQLRWLIWVLVPLLFISIFAENLP--DGLARDVLGRLAFIILL 167 (340)
T ss_pred HHHCCCCeEeccC-CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhhhhhhHHHHHHHHHH
Confidence 4556777765544 32 122112344555555555555555555543221 11223455544444333
No 109
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=22.77 E-value=2.2e+02 Score=28.42 Aligned_cols=60 Identities=18% Similarity=0.273 Sum_probs=38.6
Q ss_pred ceeEEEeCceEEEEEEecCC--cceEEeecCCCCccccccceeeEecCCcCCCCCCCCCeEEEEecCCCCCCceeeeeee
Q 048731 414 PVLRVERGVPVKFSIQAGHD--VALYITSDILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSLY 491 (904)
Q Consensus 414 p~~~~~rg~ty~f~v~~g~~--~p~~it~~~~GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~~~~~~~pd~~yy~~~~ 491 (904)
++|.|+.|.+.++++..-++ |.|-|.+- |. ...+ .++++.++.|+++ -|-+.=|+|..
T Consensus 61 ~~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~---gi------s~~I---------~pGet~TitF~ad--KpG~Y~y~C~~ 120 (135)
T TIGR03096 61 EALVVKKGTPVKVTVENKSPISEGFSIDAY---GI------SEVI---------KAGETKTISFKAD--KAGAFTIWCQL 120 (135)
T ss_pred CEEEECCCCEEEEEEEeCCCCccceEECCC---Cc------ceEE---------CCCCeEEEEEECC--CCEEEEEeCCC
Confidence 58999999999888764422 45555331 11 0001 2356777777775 57778899999
Q ss_pred cc
Q 048731 492 DQ 493 (904)
Q Consensus 492 ~~ 493 (904)
|.
T Consensus 121 HP 122 (135)
T TIGR03096 121 HP 122 (135)
T ss_pred CC
Confidence 96
No 110
>PRK10171 hydrogenase 1 b-type cytochrome subunit; Provisional
Probab=22.77 E-value=2e+02 Score=30.91 Aligned_cols=18 Identities=11% Similarity=0.209 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhhhhcc
Q 048731 801 FAIIAGIVALFTGMKHLG 818 (904)
Q Consensus 801 ~~~iLgivni~lGl~l~~ 818 (904)
+++++..+++++|+.++.
T Consensus 135 ~l~~l~~~~iiTGl~l~~ 152 (235)
T PRK10171 135 GYFLMSVFMIITGFALYS 152 (235)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 466678899999987764
No 111
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=22.46 E-value=74 Score=32.63 Aligned_cols=40 Identities=30% Similarity=0.288 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhhheeehhhhhhhhccccCCcceecCCccc
Q 048731 833 LIVWFLIVALIVVYLEFREKQRRRERIFGRSNWVLGNLEE 872 (904)
Q Consensus 833 ~i~wv~~~~~~~~~Le~~~~~~r~~~~~~~~~~~lg~~~~ 872 (904)
+++.+++.+++++|+.++..|.|++.+-.|-|=+|++.+|
T Consensus 98 ~~Vl~g~s~l~i~yfvir~~R~r~~~rktRkYgvl~~~~~ 137 (163)
T PF06679_consen 98 LYVLVGLSALAILYFVIRTFRLRRRNRKTRKYGVLTTRAE 137 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccceeecccCCCcc
Confidence 3444444455666776666654432211233446665533
No 112
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=21.46 E-value=1.9e+02 Score=25.08 Aligned_cols=31 Identities=3% Similarity=0.035 Sum_probs=25.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhhcc
Q 048731 788 RLIWEYLHFIVGRFAIIAGIVALFTGMKHLG 818 (904)
Q Consensus 788 R~~~~~~H~~lG~~~~iLgivni~lGl~l~~ 818 (904)
+++++.+-+++..+++++|.+.+-.+..+.+
T Consensus 4 K~~fk~iW~~~DIi~Fila~i~i~it~F~~n 34 (63)
T PF06341_consen 4 KKFFKTIWKYFDIILFILAMIFINITAFLIN 34 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777778999999999999999987765
No 113
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=21.31 E-value=67 Score=34.07 Aligned_cols=89 Identities=15% Similarity=0.094 Sum_probs=46.9
Q ss_pred ccEEeeehhhhhHHHHHHHHHHhhhhhhCCCc--------cccccchhhhHHhHHhhccceeEEEecCCCCCCccccccc
Q 048731 717 GWYQIHVYLQYSGLAIVLLALLFAVAELRGFY--------VSSLHVKFGITATVLACVQPLNAFVRPKKPANGEEISSKR 788 (904)
Q Consensus 717 ~Wf~iH~~lq~~a~~l~iiG~vl~~~~~~g~~--------~~~~H~~iGi~v~~L~~lQ~l~G~~rp~~~~~g~~~~~~R 788 (904)
...+.|+.+-+.+++.+++-++.-.....++. ...+=-.+|.+.+++++.-.+...-+-.+ +.+
T Consensus 72 ~l~~~RR~LGl~af~~a~lH~~~y~~~~~~~~~~~~~~~i~~~~~i~~G~ia~~lLl~LaiTS~~~~~r--------rLg 143 (205)
T PRK05419 72 LLIRTRRLLGLWAFFYATLHLLSYLLLDLGLDWSLLGKEIVKRPYITVGMAAFLILLPLALTSTRASQR--------RLG 143 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhhHHHHH--------HHH
Confidence 34567888888888777777653222111111 11122234555554443322222211110 122
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhh
Q 048731 789 LIWEYLHFIVGRFAIIAGIVALFTGM 814 (904)
Q Consensus 789 ~~~~~~H~~lG~~~~iLgivni~lGl 814 (904)
+.|+.+|+. .+.+++|+.+..+...
T Consensus 144 ~~Wk~LH~l-~Y~a~~L~~~H~~~~~ 168 (205)
T PRK05419 144 KRWQKLHRL-VYLIAILAPLHYLWSV 168 (205)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 379999998 5666678888866554
No 114
>PF13789 DUF4181: Domain of unknown function (DUF4181)
Probab=20.15 E-value=2.1e+02 Score=27.17 Aligned_cols=60 Identities=13% Similarity=0.100 Sum_probs=36.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhhcccccCCCcchhhhhHHHHHHHHHHhhhheeehhhhh
Q 048731 789 LIWEYLHFIVGRFAIIAGIVALFTGMKHLGERYGSENVHGLIWALIVWFLIVALIVVYLEFREKQ 853 (904)
Q Consensus 789 ~~~~~~H~~lG~~~~iLgivni~lGl~l~~~~~~~~~~~g~~~~~i~wv~~~~~~~~~Le~~~~~ 853 (904)
...|..|.+.-..+++..++.++.+..+...+ .....+.+++++++.-+...++|++..|
T Consensus 25 ~~vn~~h~~~e~~i~i~~ii~~~~~~~~~~~~-----~~~~~~~~~~f~~~~~~~ra~mEWKy~r 84 (110)
T PF13789_consen 25 KHVNKLHKKGEWIIFIIFIILIFIFLFIFIFR-----FFYPYILIFLFLIILFCFRAFMEWKYDR 84 (110)
T ss_pred CchhHHHHHHHHHhhhhHHHHHHHHHHHHhcc-----hHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45588999999999999999987666554321 0112233334444444555666666543
Done!