Query 048731
Match_columns 904
No_of_seqs 490 out of 1329
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 21:54:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048731.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048731hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d7b_A Cellobiose dehydrogenas 99.6 2.4E-14 8.4E-19 145.7 16.5 144 518-673 22-176 (186)
2 1d7b_A Cellobiose dehydrogenas 99.3 4.7E-11 1.6E-15 121.5 16.9 146 180-359 23-176 (186)
3 1b3i_A PETE protein, protein ( 89.8 0.87 3E-05 40.1 7.6 75 414-501 19-96 (97)
4 1iby_A Nitrosocyanin; RED copp 88.6 0.85 2.9E-05 41.5 6.9 71 413-503 37-112 (112)
5 2ux6_A Pseudoazurin; type-1 co 88.2 0.73 2.5E-05 43.2 6.2 71 414-504 21-93 (122)
6 3c75_A Amicyanin; copper prote 87.8 1 3.4E-05 42.7 7.0 72 414-501 60-131 (132)
7 2gim_A Plastocyanin; beta shee 87.7 0.91 3.1E-05 40.6 6.4 81 414-502 20-105 (106)
8 2ov0_A Amicyanin; beta-sandwic 87.6 1.2 4E-05 40.3 7.0 72 414-501 33-104 (105)
9 1kdj_A Plastocyanin; electron 87.2 0.74 2.5E-05 41.0 5.4 81 414-501 17-101 (102)
10 1paz_A Pseudoazurin precursor; 86.7 1 3.5E-05 42.2 6.3 71 414-504 21-95 (123)
11 1pmy_A Pseudoazurin; electron 85.8 1.1 3.6E-05 42.2 5.8 71 414-504 21-95 (123)
12 1id2_A Amicyanin; beta barrel, 85.7 1.7 5.7E-05 39.3 7.0 72 414-501 34-105 (106)
13 1plc_A Plastocyanin; electron 85.1 1.4 4.8E-05 39.0 6.1 78 414-501 17-98 (99)
14 2plt_A Plastocyanin; electron 84.6 1.3 4.6E-05 38.9 5.7 77 414-501 18-97 (98)
15 2cal_A Rusticyanin; iron respi 84.6 3.8 0.00013 39.8 9.4 88 406-498 53-148 (154)
16 1bxv_A Plastocyanin; copper pr 84.3 0.77 2.6E-05 39.8 3.9 70 414-501 19-90 (91)
17 2cua_A Protein (CUA); CUA cent 84.0 1.5 5.1E-05 41.9 6.1 69 415-503 61-135 (135)
18 4hci_A Cupredoxin 1; structura 83.3 1.8 6.3E-05 38.4 6.1 68 414-501 28-99 (100)
19 1pcs_A Plastocyanin; electron 82.9 1.4 4.8E-05 38.8 5.1 77 414-501 19-97 (98)
20 1iuz_A Plastocyanin; electron 82.6 1.3 4.3E-05 39.4 4.6 76 414-501 18-97 (98)
21 3tu6_A Pseudoazurin (blue copp 82.0 1.7 5.9E-05 41.0 5.6 71 414-504 23-97 (127)
22 3cvb_A Plastocyanin; cupredoxi 81.2 2.1 7.2E-05 38.0 5.6 84 414-503 19-105 (105)
23 1byp_A Protein (plastocyanin); 80.6 2.4 8.2E-05 37.3 5.8 79 414-501 17-98 (99)
24 3s8f_B Cytochrome C oxidase su 76.2 4.8 0.00016 39.9 6.9 69 414-503 93-168 (168)
25 3erx_A Pseudoazurin; copper pr 75.8 4.8 0.00016 37.7 6.5 71 414-504 21-95 (123)
26 2aan_A Auracyanin A; cupredoxi 75.2 5.5 0.00019 37.6 6.8 82 414-501 35-138 (139)
27 1qhq_A Protein (auracyanin); e 73.1 7.7 0.00026 36.5 7.4 85 414-502 33-139 (140)
28 3ay2_A Lipid modified azurin p 72.9 5.8 0.0002 39.2 6.6 86 414-503 58-167 (167)
29 4gd3_A NI/Fe-hydrogenase 1 B-t 71.8 3.3 0.00011 42.8 4.8 23 751-773 61-83 (235)
30 1cuo_A Protein (azurin ISO-2); 69.8 15 0.00052 34.5 8.4 86 414-503 18-129 (129)
31 2dv6_A Nitrite reductase; elec 66.9 10 0.00034 42.8 7.8 83 408-506 49-135 (447)
32 2iaa_C Azurin; quinoprotein, t 61.9 32 0.0011 32.2 9.0 86 414-503 17-128 (128)
33 2ccw_A Azurin II, AZN-2; elect 60.3 28 0.00097 32.6 8.3 86 414-503 18-129 (129)
34 1kqf_C FDH-N gamma, formate de 60.2 10 0.00035 38.4 5.6 97 721-818 17-136 (217)
35 1fwx_A Nitrous oxide reductase 59.3 16 0.00053 43.2 7.6 80 405-504 503-593 (595)
36 3ef4_A Pseudoazurin, blue copp 56.7 13 0.00045 34.8 5.2 70 414-503 22-95 (124)
37 1kbv_A ANIA, major outer membr 54.9 25 0.00086 38.0 8.0 91 403-504 58-157 (327)
38 2ivf_C Ethylbenzene dehydrogen 54.6 16 0.00055 37.5 5.9 46 277-325 146-191 (214)
39 3fsa_A Azurin; copper, cupredo 53.2 22 0.00074 33.5 6.1 86 414-501 18-124 (125)
40 3sbq_A Nitrous-oxide reductase 53.1 20 0.0007 42.1 7.1 70 413-502 557-636 (638)
41 2bw4_A Copper-containing nitri 51.0 60 0.002 35.0 10.2 99 404-513 216-334 (340)
42 2bw4_A Copper-containing nitri 49.5 46 0.0016 35.9 9.0 86 403-504 59-159 (340)
43 1nwp_A Azurin; electron transp 49.2 36 0.0012 31.9 7.0 86 414-501 18-127 (128)
44 3gdc_A Multicopper oxidase; be 48.5 34 0.0012 36.2 7.6 87 403-498 180-281 (288)
45 1oe1_A Dissimilatory copper-co 46.5 33 0.0011 37.0 7.3 86 403-503 53-152 (336)
46 3cg8_A Laccase; oxidoreductase 44.0 45 0.0015 36.3 7.8 78 406-490 198-289 (343)
47 2zwn_A Two-domain type laccase 42.8 40 0.0014 36.5 7.2 82 403-492 23-108 (339)
48 2dv6_A Nitrite reductase; elec 42.3 47 0.0016 37.2 7.9 76 403-491 183-262 (447)
49 3g5w_A Multicopper oxidase typ 41.5 63 0.0022 34.7 8.4 79 403-491 164-254 (318)
50 2zoo_A Probable nitrite reduct 38.0 34 0.0012 38.4 5.9 87 403-504 48-147 (442)
51 2zwn_A Two-domain type laccase 36.4 72 0.0024 34.5 7.9 78 403-490 165-254 (339)
52 3kw8_A Laccase, putative coppe 35.5 1.2E+02 0.004 31.7 9.2 92 406-504 157-266 (276)
53 1oe1_A Dissimilatory copper-co 34.0 1.7E+02 0.0056 31.4 10.3 99 404-513 210-328 (336)
54 1mzy_A Copper-containing nitri 33.6 1.7E+02 0.0057 31.3 10.2 91 403-504 209-319 (333)
55 1mzy_A Copper-containing nitri 32.5 80 0.0027 33.9 7.5 86 403-503 52-152 (333)
56 3g5w_A Multicopper oxidase typ 32.4 70 0.0024 34.3 7.0 81 404-492 23-107 (318)
57 2zoo_A Probable nitrite reduct 30.6 1.4E+02 0.0049 33.1 9.4 77 404-490 189-279 (442)
58 1kbv_A ANIA, major outer membr 24.0 2E+02 0.0069 30.7 8.8 77 404-490 199-289 (327)
59 3zx1_A Oxidoreductase, putativ 22.3 1.7E+02 0.0057 33.4 8.0 95 403-505 70-173 (481)
60 4gd3_A NI/Fe-hydrogenase 1 B-t 21.7 43 0.0015 34.3 2.7 58 683-741 17-82 (235)
61 2xu9_A Laccase; oxidoreductase 20.7 1.1E+02 0.0038 34.2 6.0 31 403-434 177-208 (439)
No 1
>1d7b_A Cellobiose dehydrogenase; B-type cytochrome, Met/His ligation, beta sandwich, Fe(II)- protoporphyrin IX, oxidoreductase; HET: NAG BMA HEM 1PG; 1.90A {Phanerochaete chrysosporium} SCOP: b.1.9.1 PDB: 1d7d_A* 1d7c_A* 1pl3_A*
Probab=99.58 E-value=2.4e-14 Score=145.71 Aligned_cols=144 Identities=15% Similarity=0.156 Sum_probs=111.8
Q ss_pred CccEEEEEEEeCC------CceEEEEEEECCCccEEEEEeCCCCCCccEEEEEEcCCCcEEEEEEeecCCCCCccCCCcc
Q 048731 518 DQQVTFFWTLSKD------KESISFAARGEKKSGYLAIGFGSGMVNSYAYVGWIDDIGKGHVNTYWIDSMDASGVHPTVE 591 (904)
Q Consensus 518 ~~~~~l~Wt~~~~------~~sI~f~lsg~s~~GWVAiGfs~~M~gSdavIg~~d~dG~v~V~~~~~~G~s~p~v~pts~ 591 (904)
..+++|.|.++.+ ..+++|+|++|.+.||+|||+|.+|.|++|+|+|.++ |++++++|+.+|+.+|.+.+.++
T Consensus 22 ~~~~~f~~alP~~~~s~~~s~d~~~qi~~p~~~gW~g~g~Gg~M~gs~l~v~w~~~-~~v~~S~R~a~g~~~P~~y~~~~ 100 (186)
T 1d7b_A 22 VHDVTYGFVFPPLATSGAQSTEFIGEVVAPIASKWIGIALGGAMNNDLLLVAWANG-NQIVSSTRWATGYVQPTAYTGTA 100 (186)
T ss_dssp TTTEEEEEEBCCCCSSSCCCCCEEEEEEEETTCCEEEEETTSSSSSSCEEEEEEET-TEEEEEEEECSSSSCCEECCSSC
T ss_pred CCCEEEEEECCCcccCCCCCccEEEEEEccCCCCEEEEecCCCCCCCcEEEEEeCC-CEEEEEEEEecCccCCCccCCCc
Confidence 3479999998743 2469999999977899999999999999999999986 89999999999999998544568
Q ss_pred ceeeeeee-eeCcEEEEEEEccCCCCCCCC-CCCCCCcccccCCCCCeEEEEEecCCCCC--CCCc-cceeecccCCCcE
Q 048731 592 NMTYVRCK-SENGFITLEFTRPLKPSCNHS-HRNSPKCKNIIDPTTPLKVIWAMGSSWTD--GHLT-ERNMHFVKSQRPV 666 (904)
Q Consensus 592 ~l~~~~~~-~~dG~~t~~FtR~l~~~~~~~-~~~~~~~~~~~d~~~~~~iIwA~G~~~~~--~~l~-~~~~H~~~s~g~~ 666 (904)
+++.+.++ +++++++++|+|+ +|..| +++. ++.++...+|||++..... .+.. ...+|+. .|.+
T Consensus 101 ~~~lL~gs~vn~t~~~~~f~C~---~C~~w~~~g~------~~~ts~~~~iwA~~~~~p~~~~~~~a~~~~H~~--~G~~ 169 (186)
T 1d7b_A 101 TLTTLPETTINSTHWKWVFRCQ---GCTEWNNGGG------IDVTSQGVLAWAFSNVAVDDPSDPQSTFSEHTD--FGFF 169 (186)
T ss_dssp EEEECTTCEECSSEEEEEEEEE---TTTBCTTSCB------CCTTSEEEEEEEEESSCCSCTTCTTCCCCCCSE--EEEE
T ss_pred eEEEcccccEeCCEEEEEEEeC---CCcccCCCCc------cccCCCCeEEEEECCCCCCCCCCCcccchhhhC--cceE
Confidence 89988877 8899999999997 78766 3331 2333333899999865432 2222 2367876 5688
Q ss_pred EEEeecC
Q 048731 667 RVLLLRG 673 (904)
Q Consensus 667 ~idl~~G 673 (904)
.+||...
T Consensus 170 ~~dL~~a 176 (186)
T 1d7b_A 170 GIDYSTA 176 (186)
T ss_dssp EEEGGGC
T ss_pred EEEcccc
Confidence 9998753
No 2
>1d7b_A Cellobiose dehydrogenase; B-type cytochrome, Met/His ligation, beta sandwich, Fe(II)- protoporphyrin IX, oxidoreductase; HET: NAG BMA HEM 1PG; 1.90A {Phanerochaete chrysosporium} SCOP: b.1.9.1 PDB: 1d7d_A* 1d7c_A* 1pl3_A*
Probab=99.29 E-value=4.7e-11 Score=121.53 Aligned_cols=146 Identities=10% Similarity=0.073 Sum_probs=109.8
Q ss_pred ccEEEEEeeecCC------CeEEEEEEEEecCCCeEEEEecCCCCCCCCccCccEEEEEEecCCceEEEEeeecCCcccc
Q 048731 180 KEFRIRWTLYADE------NSIEIGLEAATGTQNYMAFGWANPNATSGFMLGADVAMTGFKQEGLPFVDDFYITKYSECV 253 (904)
Q Consensus 180 ~~~~l~W~v~~~~------~~I~i~L~~~~~~~~y~afG~S~p~~~~~~M~gaDvvV~~vd~~g~~~~~Dyy~~~~~~c~ 253 (904)
.++.++|.+-... ..|.+||++.. +.||+|||+. ++|.|++++|+|.++ |++++.+|+.+++.++.
T Consensus 23 ~~~~f~~alP~~~~s~~~s~d~~~qi~~p~-~~gW~g~g~G------g~M~gs~l~v~w~~~-~~v~~S~R~a~g~~~P~ 94 (186)
T 1d7b_A 23 HDVTYGFVFPPLATSGAQSTEFIGEVVAPI-ASKWIGIALG------GAMNNDLLLVAWANG-NQIVSSTRWATGYVQPT 94 (186)
T ss_dssp TTEEEEEEBCCCCSSSCCCCCEEEEEEEET-TCCEEEEETT------SSSSSSCEEEEEEET-TEEEEEEEECSSSSCCE
T ss_pred CCEEEEEECCCcccCCCCCccEEEEEEccC-CCCEEEEecC------CCCCCCcEEEEEeCC-CEEEEEEEEecCccCCC
Confidence 3689999985332 35899999876 4699999995 579999999999986 89999999999998764
Q ss_pred cCCCCCCCcCCCccccCCCCCCcccceEEEEEE-EeCCEEEEEEEecCCCCCCC-CCeeecCCCcEEEEEEeCCCCCCCC
Q 048731 254 NKDGSYSGVCPDAIYEGSDSGGLVNNTRLVYGH-RRDGVSFIRYKRPLVSSDKK-YDFSVNYTENMQVVWALGLLKPPDT 331 (904)
Q Consensus 254 ~~~g~~~g~cpD~~~~g~~~~g~~nd~~l~~g~-~~~G~t~i~f~R~L~t~D~~-~D~~i~~~~~~~vIwA~G~~~~~~~ 331 (904)
.. | + .++++++.++ +++++.+++|||+ +|+.- .|..+..+....+|||++..++.+.
T Consensus 95 ~y---------~----~------~~~~~lL~gs~vn~t~~~~~f~C~--~C~~w~~~g~~~~ts~~~~iwA~~~~~p~~~ 153 (186)
T 1d7b_A 95 AY---------T----G------TATLTTLPETTINSTHWKWVFRCQ--GCTEWNNGGGIDVTSQGVLAWAFSNVAVDDP 153 (186)
T ss_dssp EC---------C----S------SCEEEECTTCEECSSEEEEEEEEE--TTTBCTTSCBCCTTSEEEEEEEEESSCCSCT
T ss_pred cc---------C----C------CceEEEcccccEeCCEEEEEEEeC--CCcccCCCCccccCCCCeEEEEECCCCCCCC
Confidence 11 1 1 3689999998 8888999999999 88752 3434444444499999998876544
Q ss_pred CCCccccCCCCCCCccccceeEeeccCC
Q 048731 332 LTPYYLPQNHGEPESVTYGHLVLNVSEH 359 (904)
Q Consensus 332 ~~~~y~~~~h~~~~~~~~~~~~~~~~~~ 359 (904)
..+.-...+|. .+|...+++.+.
T Consensus 154 ~~~~a~~~~H~-----~~G~~~~dL~~a 176 (186)
T 1d7b_A 154 SDPQSTFSEHT-----DFGFFGIDYSTA 176 (186)
T ss_dssp TCTTCCCCCCS-----EEEEEEEEGGGC
T ss_pred CCCcccchhhh-----CcceEEEEcccc
Confidence 33322344575 288899998764
No 3
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=89.77 E-value=0.87 Score=40.12 Aligned_cols=75 Identities=17% Similarity=0.150 Sum_probs=49.1
Q ss_pred ceeEEEeCceEEEEEEecCCcceEEeecCCC-CccccccceeeEecCCcCCCCCCCCCeEEEEecCCCCCCceeeeeeec
Q 048731 414 PVLRVERGVPVKFSIQAGHDVALYITSDILG-GNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSLYD 492 (904)
Q Consensus 414 p~~~~~rg~ty~f~v~~g~~~p~~it~~~~G-G~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~~~~~~~pd~~yy~~~~~ 492 (904)
++|.++.|.|.+|...++-.|.+.+.+.... |...... .+..-.+|+..++++ +.|-+..|.|..|
T Consensus 19 ~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~~~~~~~~~~---------~~~~~~~g~~~~~tf----~~~G~y~y~C~~H 85 (97)
T 1b3i_A 19 KALSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSN---------TKLAIAPGSFYSVTL----GTPGTYSFYCTPH 85 (97)
T ss_dssp SEEEECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCB---------CCCCCSCSCCEEEEC----CSCSEEEEECSST
T ss_pred CEEEECCCCEEEEEECCCCCeEEEEeCCCCccccccccc---------cceecCCCCEEEEEe----CCCeEEEEEccCh
Confidence 5799999999999976655789988764321 0000000 001112355566655 5789999999999
Q ss_pred c--ccceEEEe
Q 048731 493 Q--KMGWRIQV 501 (904)
Q Consensus 493 ~--~~g~~i~v 501 (904)
. .|-.+|.|
T Consensus 86 ~~~gM~G~i~V 96 (97)
T 1b3i_A 86 RGAGMVGTITV 96 (97)
T ss_dssp TTTTCEEEEEE
T ss_pred hhcCCEEEEEE
Confidence 9 67788876
No 4
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=88.63 E-value=0.85 Score=41.49 Aligned_cols=71 Identities=17% Similarity=0.184 Sum_probs=51.9
Q ss_pred CceeEEEeCceEEEEEEecC--CcceEEeecCCCCccccccceeeEecCCcCCCCCCCCCeEEEEecCCCCCCceeeeee
Q 048731 413 APVLRVERGVPVKFSIQAGH--DVALYITSDILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSL 490 (904)
Q Consensus 413 ~p~~~~~rg~ty~f~v~~g~--~~p~~it~~~~GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~~~~~~~pd~~yy~~~ 490 (904)
-|+|.|++|.+++|.+...+ -|-|.|.+. |. +. .-.+|+..+++|+++ .|-+..|+|.
T Consensus 37 p~~i~v~~G~~V~~~~~n~d~~~H~~~i~~~---~~------~~---------~i~pG~~~~~~f~~~--~~G~y~~~C~ 96 (112)
T 1iby_A 37 PETLVVKKGDAVKVVVENKSPISEGFSIDAF---GV------QE---------VIKAGETKTISFTAD--KAGAFTIWCQ 96 (112)
T ss_dssp SCEEEEETTCEEEEEEEECSSSCEEEEEGGG---TE------EE---------EECTTCEEEEEEECC--SCEEEEEBCS
T ss_pred CCEEEEeCCCEEEEEEEECCCCeEEEEEcCC---Cc------ee---------EeCCCCEEEEEEECC--CCEEEEEECC
Confidence 37999999999999876654 366666532 11 11 113467788999874 6899999999
Q ss_pred eccc---cceEEEeec
Q 048731 491 YDQK---MGWRIQVVD 503 (904)
Q Consensus 491 ~~~~---~g~~i~vv~ 503 (904)
.|.. |-.+|.|.|
T Consensus 97 ~~~~~~~M~g~i~V~~ 112 (112)
T 1iby_A 97 LHPKNIHLPGTLNVVE 112 (112)
T ss_dssp SSCTTTBCCEEEEEEC
T ss_pred CCCchHHCEEEEEEeC
Confidence 9986 999998865
No 5
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=88.17 E-value=0.73 Score=43.16 Aligned_cols=71 Identities=17% Similarity=0.124 Sum_probs=48.8
Q ss_pred ceeEEEeCceEEEEEEecCCcceEEeec--CCCCccccccceeeEecCCcCCCCCCCCCeEEEEecCCCCCCceeeeeee
Q 048731 414 PVLRVERGVPVKFSIQAGHDVALYITSD--ILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSLY 491 (904)
Q Consensus 414 p~~~~~rg~ty~f~v~~g~~~p~~it~~--~~GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~~~~~~~pd~~yy~~~~ 491 (904)
++|.++.|.|.+|...+. .|-+.+.++ |.|.-. + ...+++..+++| +.|-+..|.|..
T Consensus 21 ~~i~V~~GdtV~f~n~d~-~H~v~~~~~~~p~~~~~---------~------~~~~g~t~~~tF----~~~G~y~y~C~~ 80 (122)
T 2ux6_A 21 ASLKVAPGDTVTFIPTDK-GHNVETIKGMIPDGAEA---------F------KSKINENYKVTF----TAPGVYGVKCTP 80 (122)
T ss_dssp SEEEECTTEEEEEEESSS-SCCCEECTTCSCTTCCC---------C------BCCTTCCEEEEE----CSCEEEEEEETT
T ss_pred CEEEECCCCEEEEEECCC-CcEEEEcccccCCCcce---------e------ecCCCCEEEEEe----CCCEEEEEEeCC
Confidence 589999999999988754 676666542 111100 0 011344444444 578899999999
Q ss_pred ccccceEEEeecC
Q 048731 492 DQKMGWRIQVVDG 504 (904)
Q Consensus 492 ~~~~g~~i~vv~~ 504 (904)
|..|-.+|.|.+.
T Consensus 81 H~~M~G~I~V~~~ 93 (122)
T 2ux6_A 81 HPFMVGVVQVGDA 93 (122)
T ss_dssp EEEEEEEEEESSS
T ss_pred CccCEEEEEEeCC
Confidence 9999999999874
No 6
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=87.83 E-value=1 Score=42.69 Aligned_cols=72 Identities=15% Similarity=0.127 Sum_probs=47.1
Q ss_pred ceeEEEeCceEEEEEEecCCcceEEeecCCCCccccccceeeEecCCcCCCCCCCCCeEEEEecCCCCCCceeeeeeecc
Q 048731 414 PVLRVERGVPVKFSIQAGHDVALYITSDILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSLYDQ 493 (904)
Q Consensus 414 p~~~~~rg~ty~f~v~~g~~~p~~it~~~~GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~~~~~~~pd~~yy~~~~~~ 493 (904)
++|.++.|.|++|.....-.|-+.+.+...|.... +...+ .+|+.. +||- +.|-+..|.|..|.
T Consensus 60 ~~i~V~~GdtV~~~N~d~~~H~v~~~~~~~g~~~~----~s~~l--------~pG~t~--~~tF--~~~G~y~y~C~~H~ 123 (132)
T 3c75_A 60 PEVTIKAGETVYWVNGEVMPHNVAFKKGIVGEDAF----RGEMM--------TKDQAY--AITF--NEAGSYDYFCTPHP 123 (132)
T ss_dssp SEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCE----ECCCB--------CTTEEE--EEEE--CSCEEEEEECSSCT
T ss_pred CEEEECCCCEEEEEECCCCceEEEEeCCCCCcccc----ccccc--------CCCCEE--EEEc--CCCEEEEEEeCCCc
Confidence 58999999999998665545777776543221100 00000 123333 3444 47889999999999
Q ss_pred ccceEEEe
Q 048731 494 KMGWRIQV 501 (904)
Q Consensus 494 ~~g~~i~v 501 (904)
.|-.+|.|
T Consensus 124 gM~G~I~V 131 (132)
T 3c75_A 124 FMRGKVIV 131 (132)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEE
Confidence 99999987
No 7
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=87.70 E-value=0.91 Score=40.62 Aligned_cols=81 Identities=11% Similarity=0.074 Sum_probs=50.3
Q ss_pred ceeEEEeCceEEEEEEecCCcceEEeecCC---CCccccccceeeEecCCcCCCCCCCCCeEEEEecCCCCCCceeeeee
Q 048731 414 PVLRVERGVPVKFSIQAGHDVALYITSDIL---GGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSL 490 (904)
Q Consensus 414 p~~~~~rg~ty~f~v~~g~~~p~~it~~~~---GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~~~~~~~pd~~yy~~~ 490 (904)
++|.+++|.|++|...+.-.|+|.+.+... .|... . .++ ..+..-.+|+..+++++++ +.|-+..|.|.
T Consensus 20 ~~i~v~~Gd~V~~~n~~~~~H~~~~~~~~~~~~~g~~~---~---~~~-~~~~~~~pG~~~~~~f~~~-~~~G~y~y~C~ 91 (106)
T 2gim_A 20 AKLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLA---K---SLS-HKQLLMSPGQSTSTTFPAD-APAGEYTFYCE 91 (106)
T ss_dssp SEEEECTTCEEEEEECSSSCCCBEECSSSSTTCCHHHH---H---HHC-BCSCCCSTTCEEEEECCTT-CCSEEEEEECT
T ss_pred CEEEECCCCEEEEEECCCCCceEEEeCCCCcccccccc---h---hcc-ccceeeCCCCEEEEEEecC-CCCceEEEEeC
Confidence 589999999999986654578998865321 11100 0 000 0001112356666666643 46888999999
Q ss_pred ecc--ccceEEEee
Q 048731 491 YDQ--KMGWRIQVV 502 (904)
Q Consensus 491 ~~~--~~g~~i~vv 502 (904)
.|. .|-.+|.|.
T Consensus 92 ~H~~~GM~G~i~V~ 105 (106)
T 2gim_A 92 PHRGAGMVGKITVA 105 (106)
T ss_dssp TTGGGTCEEEEEEC
T ss_pred ChhhcCcEEEEEEc
Confidence 999 577888774
No 8
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=87.58 E-value=1.2 Score=40.27 Aligned_cols=72 Identities=18% Similarity=0.155 Sum_probs=46.4
Q ss_pred ceeEEEeCceEEEEEEecCCcceEEeecCCCCccccccceeeEecCCcCCCCCCCCCeEEEEecCCCCCCceeeeeeecc
Q 048731 414 PVLRVERGVPVKFSIQAGHDVALYITSDILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSLYDQ 493 (904)
Q Consensus 414 p~~~~~rg~ty~f~v~~g~~~p~~it~~~~GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~~~~~~~pd~~yy~~~~~~ 493 (904)
++|.|+.|.|.+|.....-.|-+.+.+.+.|- ... .. + . -.+|+ ++.||- +.|-+..|.|..|.
T Consensus 33 ~~i~v~~Gd~V~~~N~d~~~H~v~~~~~~~g~-~~~---~~----~-~---~~pG~--~~~~tf--~~~G~y~y~C~~H~ 96 (105)
T 2ov0_A 33 PELHVKVGDTVTWINREAMPHNVHFVAGVLGE-AAL---KG----P-M---MKKEQ--AYSLTF--TEAGTYDYHCTPHP 96 (105)
T ss_dssp SEEEECTTCEEEEEECSSSCBCCEECTTTSSS-SCE---EC----C-C---BCTTE--EEEEEE--CSCEEEEEECSSCT
T ss_pred CEEEECCCCEEEEEECCCCCEEEEEcCCCCCc-ccc---cc----c-c---cCCCC--EEEEEe--CCCEEEEEEeCCCC
Confidence 68999999999998655445777765433221 000 00 0 0 01233 344444 57889999999999
Q ss_pred ccceEEEe
Q 048731 494 KMGWRIQV 501 (904)
Q Consensus 494 ~~g~~i~v 501 (904)
.|-.+|.|
T Consensus 97 gM~G~i~V 104 (105)
T 2ov0_A 97 FMRGKVVV 104 (105)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEE
Confidence 99999987
No 9
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=87.23 E-value=0.74 Score=40.99 Aligned_cols=81 Identities=14% Similarity=0.155 Sum_probs=48.1
Q ss_pred ceeEEEeCceEEEEEEecCCcceEEeecCCCCccccccceeeEecCCcCCC--CCCCCCeEEEEecCCCCCCceeeeeee
Q 048731 414 PVLRVERGVPVKFSIQAGHDVALYITSDILGGNASLRNVTETIYAGGPEAE--GVKASPMELVWAPDRNTPDEVYYQSLY 491 (904)
Q Consensus 414 p~~~~~rg~ty~f~v~~g~~~p~~it~~~~GG~~~~~~~~~~~~ag~~~~~--g~~~~~~~~~~~~~~~~pd~~yy~~~~ 491 (904)
++|.++.|.|++|...+.-.|.+.+.+ +.|..+...... .-.+..... -.+|+..+++| +.|-+..|.|..
T Consensus 17 ~~i~v~~G~tV~~~n~~~~~H~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~pG~~~~~tf----~~~G~y~y~C~~ 89 (102)
T 1kdj_A 17 DSITVSAGEAVEFTLVGETGHNIVFDI-PAGAPGTVASEL--KAASMDENDLLSEDEPSFKAKV----STPGTYTFYCTP 89 (102)
T ss_dssp SEEEECTTCCEEEEECSSSCBCCEECC-CTTCCHHHHHHH--HHTSCCTTCCBBTTBCEEEECC----CSCEEEEEECST
T ss_pred CEEEECCCCEEEEEECCCCCeEEEEeC-cccccccccchh--hcccccccceecCCCCEEEEEe----CCCeEEEEEeCC
Confidence 579999999999987665578998863 433210000000 000000001 12234444433 679999999999
Q ss_pred cc--ccceEEEe
Q 048731 492 DQ--KMGWRIQV 501 (904)
Q Consensus 492 ~~--~~g~~i~v 501 (904)
|. .|-.+|.|
T Consensus 90 H~~~gM~G~i~V 101 (102)
T 1kdj_A 90 HKSANMKGTLTV 101 (102)
T ss_dssp TGGGTCEEEEEE
T ss_pred CcccCCeEEEEE
Confidence 99 68888876
No 10
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=86.65 E-value=1 Score=42.22 Aligned_cols=71 Identities=15% Similarity=0.107 Sum_probs=48.5
Q ss_pred ceeEEEeCceEEEEEEecCCcceEEeecC--CCCccccccceeeEecCCcCCCCCCCCCeEEEEecCCCCCCceeeeeee
Q 048731 414 PVLRVERGVPVKFSIQAGHDVALYITSDI--LGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSLY 491 (904)
Q Consensus 414 p~~~~~rg~ty~f~v~~g~~~p~~it~~~--~GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~~~~~~~pd~~yy~~~~ 491 (904)
++|.++.|.|++|...+. .|-+.+..+. .|.- .+.. .+|+. ++||- +.|-+..|.|..
T Consensus 21 ~~i~V~~GdtV~f~~~~~-~H~v~~~~~~~p~~~~---------~~~~------~pG~t--~~~tF--~~~G~y~y~C~~ 80 (123)
T 1paz_A 21 AYIKANPGDTVTFIPVDK-GHNVESIKDMIPEGAE---------KFKS------KINEN--YVLTV--TQPGAYLVKCTP 80 (123)
T ss_dssp SEEEECTTCEEEEEESSS-SCCCEECTTCSCTTCC---------CCBC------CTTCC--EEEEC--CSCEEEEEECTT
T ss_pred CEEEECCCCEEEEEECCC-CeEEEEecccCCCCcc---------ceec------CCCCE--EEEEe--CCCEEEEEEeCC
Confidence 589999999999998765 5766664211 1110 0110 13443 55555 479999999999
Q ss_pred cc--ccceEEEeecC
Q 048731 492 DQ--KMGWRIQVVDG 504 (904)
Q Consensus 492 ~~--~~g~~i~vv~~ 504 (904)
|. .|-.+|.|.+.
T Consensus 81 H~~~gM~G~I~V~~~ 95 (123)
T 1paz_A 81 HYAMGMIALIAVGDS 95 (123)
T ss_dssp TGGGTCEEEEEESSS
T ss_pred cccCCCEEEEEEcCC
Confidence 99 89999999764
No 11
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=85.82 E-value=1.1 Score=42.17 Aligned_cols=71 Identities=13% Similarity=0.029 Sum_probs=48.3
Q ss_pred ceeEEEeCceEEEEEEecCCcceEEeec--CCCCccccccceeeEecCCcCCCCCCCCCeEEEEecCCCCCCceeeeeee
Q 048731 414 PVLRVERGVPVKFSIQAGHDVALYITSD--ILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSLY 491 (904)
Q Consensus 414 p~~~~~rg~ty~f~v~~g~~~p~~it~~--~~GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~~~~~~~pd~~yy~~~~ 491 (904)
++|.++.|.|.+|...+. .|-+.+.++ |.|. . .+ ...+|+. ++||- +.|-+..|.|..
T Consensus 21 ~~i~V~~GdtV~f~n~~~-~H~v~~~~~~~p~~~-~--------~~------~~~pG~t--~~~tF--~~~G~y~y~C~~ 80 (123)
T 1pmy_A 21 ALVRLKPGDSIKFLPTDK-GHNVETIKGMAPDGA-D--------YV------KTTVGQE--AVVKF--DKEGVYGFKCAP 80 (123)
T ss_dssp SEEEECTTCEEEEECSSS-SCCCEECTTSSCTTC-C--------CC------BCCTTSC--EEEEC--CSCEEEEEECST
T ss_pred CEEEECCCCEEEEEECCC-CcEEEEecccCCCCc-c--------ce------ecCCCCE--EEEEe--CCCeEEEEEeCC
Confidence 589999999999988765 676666531 1111 0 00 0013443 45555 479999999999
Q ss_pred cc--ccceEEEeecC
Q 048731 492 DQ--KMGWRIQVVDG 504 (904)
Q Consensus 492 ~~--~~g~~i~vv~~ 504 (904)
|. .|-.+|.|.+.
T Consensus 81 H~~~gM~G~I~V~~~ 95 (123)
T 1pmy_A 81 HYMMGMVALVVVGDK 95 (123)
T ss_dssp TTTTTCEEEEEESSC
T ss_pred ccccCCEEEEEEcCC
Confidence 99 89999999864
No 12
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=85.69 E-value=1.7 Score=39.34 Aligned_cols=72 Identities=15% Similarity=0.179 Sum_probs=47.2
Q ss_pred ceeEEEeCceEEEEEEecCCcceEEeecCCCCccccccceeeEecCCcCCCCCCCCCeEEEEecCCCCCCceeeeeeecc
Q 048731 414 PVLRVERGVPVKFSIQAGHDVALYITSDILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSLYDQ 493 (904)
Q Consensus 414 p~~~~~rg~ty~f~v~~g~~~p~~it~~~~GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~~~~~~~pd~~yy~~~~~~ 493 (904)
++|.|+.|.|.+|...+.-.|-+.+.+...|.... ....+ .+|+..+++| +.|-+..|.|..|.
T Consensus 34 ~~i~V~~G~tV~~~N~d~~~H~v~~~~~~~~~~~~----~s~~l--------~~g~~~~~tf----~~~G~y~~~C~~H~ 97 (106)
T 1id2_A 34 PEVTIKAGETVYWVNGEVMPHNVAFKKGIVGEDAF----RGEMM--------TKDQAYAITF----NEAGSYDYFCTPHP 97 (106)
T ss_dssp SEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCE----ECCCB--------CTTEEEEEEE----CSCEEEEEECSSCT
T ss_pred CEEEECCCCEEEEEECCCCcEEEEEeCCCCCcccc----ccccc--------CCCCEEEEEe----CCCEEEEEEeCCCC
Confidence 58999999999999665546777776543221000 00000 1233344444 57889999999999
Q ss_pred ccceEEEe
Q 048731 494 KMGWRIQV 501 (904)
Q Consensus 494 ~~g~~i~v 501 (904)
.|-.+|.|
T Consensus 98 ~M~G~I~V 105 (106)
T 1id2_A 98 FMRGKVIV 105 (106)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEE
Confidence 99999987
No 13
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=85.13 E-value=1.4 Score=38.96 Aligned_cols=78 Identities=15% Similarity=0.206 Sum_probs=47.6
Q ss_pred ceeEEEeCceEEEEEEecCCcceEEeec--CCCCccccccceeeEecCCcCCCCCCCCCeEEEEecCCCCCCceeeeeee
Q 048731 414 PVLRVERGVPVKFSIQAGHDVALYITSD--ILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSLY 491 (904)
Q Consensus 414 p~~~~~rg~ty~f~v~~g~~~p~~it~~--~~GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~~~~~~~pd~~yy~~~~ 491 (904)
++|.++.|.|++|...++-.|.+.+.+. |.| .... ... +. ..+..-.+|+..+++| +.|-+..|.|..
T Consensus 17 ~~i~v~~G~tV~~~n~~~~~H~v~~~~~~~p~~-~~~~-~~~---~~-~~~~~~~~G~~~~~tf----~~~G~y~~~C~~ 86 (99)
T 1plc_A 17 SEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSG-VDAS-KIS---MS-EEDLLNAKGETFEVAL----SNKGEYSFYCSP 86 (99)
T ss_dssp SEEEECTTCEEEEEECSSCCBCCEECTTSSCTT-CCHH-HHC---CC-TTCCBCSTTCEEEEEC----CSCEEEEEECGG
T ss_pred CEEEECCCCEEEEEECCCCceEEEEeCCCCccc-cccc-ccc---cc-cCccccCCCCEEEEEE----CCCceEEEEcCC
Confidence 5899999999999766655788887652 111 1100 000 00 0000112345555554 378899999999
Q ss_pred cc--ccceEEEe
Q 048731 492 DQ--KMGWRIQV 501 (904)
Q Consensus 492 ~~--~~g~~i~v 501 (904)
|. .|-.+|.|
T Consensus 87 H~~~gM~G~i~V 98 (99)
T 1plc_A 87 HQGAGMVGKVTV 98 (99)
T ss_dssp GTTTTCEEEEEE
T ss_pred CcccCCEEEEEE
Confidence 99 78788876
No 14
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=84.63 E-value=1.3 Score=38.90 Aligned_cols=77 Identities=18% Similarity=0.173 Sum_probs=47.9
Q ss_pred ceeEEEeCceEEEEEEecCCcceEEeecCC-CCccccccceeeEecCCcCCCCCCCCCeEEEEecCCCCCCceeeeeeec
Q 048731 414 PVLRVERGVPVKFSIQAGHDVALYITSDIL-GGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSLYD 492 (904)
Q Consensus 414 p~~~~~rg~ty~f~v~~g~~~p~~it~~~~-GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~~~~~~~pd~~yy~~~~~ 492 (904)
++|.++.|.|.+|...++-.|.|.+.+... .|.....-..... .-.+|+..+++|+ .|-+..|.|..|
T Consensus 18 ~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~p~~~~~~~~~~~~~-------~~~pG~~~~~tf~----~~G~y~y~C~~H 86 (98)
T 2plt_A 18 KTLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDDY-------LNAPGETYSVKLT----AAGEYGYYCEPH 86 (98)
T ss_dssp SEEEECTTCEEEEEECSSCCEEEEECGGGSCTTCCHHHHCEEEE-------ECSTTCEEEEECC----SCEEEEEECGGG
T ss_pred CEEEECCCCEEEEEECCCCceEEEEeCCCCCCccccccccccce-------ecCCCCEEEEEeC----CCeEEEEEcCCc
Confidence 579999999999977665578988876311 1111000000000 1123455555553 688999999999
Q ss_pred c--ccceEEEe
Q 048731 493 Q--KMGWRIQV 501 (904)
Q Consensus 493 ~--~~g~~i~v 501 (904)
. .|-.+|.|
T Consensus 87 ~~~gM~G~i~V 97 (98)
T 2plt_A 87 QGAGMVGKIIV 97 (98)
T ss_dssp GGGTCEEEEEE
T ss_pred cccCCeEEEEE
Confidence 9 77788876
No 15
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=84.60 E-value=3.8 Score=39.80 Aligned_cols=88 Identities=20% Similarity=0.280 Sum_probs=53.9
Q ss_pred EEEcCccCceeEEEeCceEEEEEEecC---CcceEEeecCCCCccccccceeeEecCCcCC-CCCCCC--CeEEEEecCC
Q 048731 406 FYINKKEAPVLRVERGVPVKFSIQAGH---DVALYITSDILGGNASLRNVTETIYAGGPEA-EGVKAS--PMELVWAPDR 479 (904)
Q Consensus 406 wyiN~~~~p~~~~~rg~ty~f~v~~g~---~~p~~it~~~~GG~~~~~~~~~~~~ag~~~~-~g~~~~--~~~~~~~~~~ 479 (904)
.-||+.-.|+|+|+.|.+++|++...+ .|-|.|..... .+..... ...+.++.+.. .=.+|+ ..+++|++
T Consensus 53 ~~~~g~~~p~i~V~~GD~V~~~~tN~~~~~~H~~~i~~~~~-~~~~~~~-~~~~~~~~~~~~~i~PG~sgt~t~tft~-- 128 (154)
T 2cal_A 53 FEVHDKKNPTLEIPAGATVDVTFINTNKGFGHSFDITKKGP-PYAVMPV-IDPIVAGTGFSPVPKDGKFGYTDFTWHP-- 128 (154)
T ss_dssp EEETTEESCEEEECTTCEEEEEEEECCTTCCCCCEEESCCS-CCCSSCC-CCSEEEEBCCCCCCBTTBEEEEEEEECC--
T ss_pred ccccCCCCCEEEEeCCCEEEEEEEcCCCCeeeEEEEeecCc-chhcccc-ccccccccccccccCCCCceEEEEEEEE--
Confidence 457888889999999999999887632 36677764221 1111111 11233332111 113466 66778885
Q ss_pred CCCCceeeeeee--ccccceE
Q 048731 480 NTPDEVYYQSLY--DQKMGWR 498 (904)
Q Consensus 480 ~~pd~~yy~~~~--~~~~g~~ 498 (904)
.|-+.+|.|.. |..+|=+
T Consensus 129 -~pGtY~y~C~~~gH~~~GM~ 148 (154)
T 2cal_A 129 -TAGTYYYVCQIPGMAATGMF 148 (154)
T ss_dssp -CSEEEEEECCSTTTGGGTCE
T ss_pred -CCceEEEECCCCCHHHCCCE
Confidence 79999999985 7765533
No 16
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=84.32 E-value=0.77 Score=39.77 Aligned_cols=70 Identities=11% Similarity=0.090 Sum_probs=44.6
Q ss_pred ceeEEEeCceEEEEEEecCCcceEEeecCCCCccccccceeeEecCCcCCCCCCCCCeEEEEecCCCCCCceeeeeeecc
Q 048731 414 PVLRVERGVPVKFSIQAGHDVALYITSDILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSLYDQ 493 (904)
Q Consensus 414 p~~~~~rg~ty~f~v~~g~~~p~~it~~~~GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~~~~~~~pd~~yy~~~~~~ 493 (904)
++|.++.|.|++|...+...|.+.+.+.. .+. ..+..+ .+|+..++ +. +.|-+.+|.|..|.
T Consensus 19 ~~i~v~~Gd~V~~~n~~~~~H~v~~~~~~--~~~---~~~~~~---------~~g~~~~~--~f--~~~G~y~~~C~~H~ 80 (91)
T 1bxv_A 19 STIEIQAGDTVQWVNNKLAPHNVVVEGQP--ELS---HKDLAF---------SPGETFEA--TF--SEPGTYTYYCEPHR 80 (91)
T ss_dssp SEEEECTTCEEEEEECSSCCEEEEETTCG--GGC---EEEEEC---------STTCEEEE--EC--CSCEEEEEECTTTG
T ss_pred CEEEECCCCEEEEEECCCCCcEEEEeCCC--ccC---ccccee---------CCCCEEEE--Ee--CCCEEEEEEeCCCc
Confidence 57899999999998665456888765421 110 001011 12343444 33 67899999999998
Q ss_pred --ccceEEEe
Q 048731 494 --KMGWRIQV 501 (904)
Q Consensus 494 --~~g~~i~v 501 (904)
.|-.+|.|
T Consensus 81 ~~gM~g~i~V 90 (91)
T 1bxv_A 81 GAGMVGKIVV 90 (91)
T ss_dssp GGTCEEEEEE
T ss_pred cCCCEEEEEE
Confidence 57777765
No 17
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=84.02 E-value=1.5 Score=41.87 Aligned_cols=69 Identities=16% Similarity=0.152 Sum_probs=50.7
Q ss_pred eeEEEeCceEEEEEEecC-CcceEEeecCCCCccccccceeeEecCCcCCCCCCCCCeEEEEecCCCCCCceeeee----
Q 048731 415 VLRVERGVPVKFSIQAGH-DVALYITSDILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQS---- 489 (904)
Q Consensus 415 ~~~~~rg~ty~f~v~~g~-~~p~~it~~~~GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~~~~~~~pd~~yy~~---- 489 (904)
+|.|..|.+.+|.+...+ -|-|.|-+ .|. ++.+ .+|...++.|+++ -|-+.+|||
T Consensus 61 ~l~Vp~G~~V~~~vts~DV~Hsf~ip~---~~~--------k~d~-------~PG~~~~~~~~~~--~~G~y~~~C~e~C 120 (135)
T 2cua_A 61 PIEVPQGAEIVFKITSPDVIHGFHVEG---TNI--------NVEV-------LPGEVSTVRYTFK--RPGEYRIICNQYC 120 (135)
T ss_dssp SEEEETTSEEEEEEEBSSSCEEEEETT---SSC--------EEEE-------CBTBCEEEEEECC--SCEEEEEECCSCC
T ss_pred EEEEcCCCEEEEEEEeCCccceEEecC---CCc--------eeEe-------CCCCcEEEEEEcC--CCEEEEEECcccC
Confidence 899999999999997652 26777632 111 1111 2355678889875 588999999
Q ss_pred -eeccccceEEEeec
Q 048731 490 -LYDQKMGWRIQVVD 503 (904)
Q Consensus 490 -~~~~~~g~~i~vv~ 503 (904)
..|..|-.+|.|++
T Consensus 121 G~~H~~M~g~v~V~~ 135 (135)
T 2cua_A 121 GLGHQNMFGTIVVKE 135 (135)
T ss_dssp STTSTTCEEEEEEEC
T ss_pred CCCcCCCEEEEEEEC
Confidence 89999999999874
No 18
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=83.30 E-value=1.8 Score=38.44 Aligned_cols=68 Identities=9% Similarity=0.088 Sum_probs=46.2
Q ss_pred ceeEEEeCceEEEEEEec--CCcceEEeecCCCCccccccceeeEecCCcCCCCCCCCCeEEEEecCCCCCCceeeeeee
Q 048731 414 PVLRVERGVPVKFSIQAG--HDVALYITSDILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSLY 491 (904)
Q Consensus 414 p~~~~~rg~ty~f~v~~g--~~~p~~it~~~~GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~~~~~~~pd~~yy~~~~ 491 (904)
.+|.|+.|.|++|.+..- ..|-|.|.+.. . +..+ .+|+..++.||++ .|-+..|.|..
T Consensus 28 ~~i~v~~G~tV~~~~~n~d~~~H~~~~~~~~---~------~~~~---------~pg~~~~~~~t~~--~~G~Y~y~C~~ 87 (100)
T 4hci_A 28 NVITIPINESTTLLLKNKGKSEHTFTIKKLG---I------DVVV---------ESGKEKNITVKPK--SAGTYELICRY 87 (100)
T ss_dssp SEEEECTTSCEEEEEEECSSSCEEEEEGGGT---E------EEEE---------CTTCEEEEEECCC--SCEEEEEECTT
T ss_pred CEEEECCCCEEEEEEEcCCCceEEEEEecCC---c------ceee---------cCCcceeEEEecc--cCceEEEECcc
Confidence 479999999999976533 34677664311 1 1111 2356677888864 68899999999
Q ss_pred c--cccceEEEe
Q 048731 492 D--QKMGWRIQV 501 (904)
Q Consensus 492 ~--~~~g~~i~v 501 (904)
| ..|-++|.|
T Consensus 88 H~~~gM~G~i~V 99 (100)
T 4hci_A 88 HLLKGMEGKVIV 99 (100)
T ss_dssp TGGGTCEEEEEE
T ss_pred ccCCCCEEEEEE
Confidence 9 557788776
No 19
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=82.87 E-value=1.4 Score=38.81 Aligned_cols=77 Identities=10% Similarity=0.107 Sum_probs=47.0
Q ss_pred ceeEEEeCceEEEEEEecCCcceEEeecCCCCccccccceeeEecCCcCCCCCCCCCeEEEEecCCCCCCceeeeeeecc
Q 048731 414 PVLRVERGVPVKFSIQAGHDVALYITSDILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSLYDQ 493 (904)
Q Consensus 414 p~~~~~rg~ty~f~v~~g~~~p~~it~~~~GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~~~~~~~pd~~yy~~~~~~ 493 (904)
++|.++.|.|++|...+.-.|.|.+.+...-|.....-..... .-.+|+..+++| +.|-+..|.|..|.
T Consensus 19 ~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~pg~~~~~~~~~~~-------~~~pG~~~~~tf----~~~G~y~~~C~~H~ 87 (98)
T 1pcs_A 19 STVTIKAGEEVKWVNNKLSPHNIVFDADGVPADTAAKLSHKGL-------LFAAGESFTSTF----TEPGTYTYYCEPHR 87 (98)
T ss_dssp SEEEECTTCEEEEEECSSCCEEEEECCSSSCHHHHHHHCEEEE-------ECSTTCEEEEEC----CSCEEEEEECGGGT
T ss_pred CEEEECCCCEEEEEECCCCCcEEEEeCCCCCcccccccccccc-------ccCCCCEEEEEc----CCCeEEEEEcCCcc
Confidence 5799999999999976655789888653210100000000000 011244455544 57889999999999
Q ss_pred c--cceEEEe
Q 048731 494 K--MGWRIQV 501 (904)
Q Consensus 494 ~--~g~~i~v 501 (904)
. |-.+|.|
T Consensus 88 ~~gM~G~i~V 97 (98)
T 1pcs_A 88 GAGMVGKVVV 97 (98)
T ss_dssp TTTCEEEEEE
T ss_pred ccCCeEEEEE
Confidence 5 7787776
No 20
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=82.60 E-value=1.3 Score=39.36 Aligned_cols=76 Identities=17% Similarity=0.106 Sum_probs=46.9
Q ss_pred ceeEEEeCceEEEEEEecCCcceEEeec--CCCCccccccceeeEecCCcCCCCCCCCCeEEEEecCCCCCCceeeeeee
Q 048731 414 PVLRVERGVPVKFSIQAGHDVALYITSD--ILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSLY 491 (904)
Q Consensus 414 p~~~~~rg~ty~f~v~~g~~~p~~it~~--~~GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~~~~~~~pd~~yy~~~~ 491 (904)
++|.++.|.|.+|...++-.|-+.+.+. |. |.....-..... ...+++..+++| +.|-+..|.|..
T Consensus 18 ~~i~v~~GdtV~~~n~~~~~H~v~~~~~~~p~-g~~~~~~~~~~~-------~~~~g~~~~~tf----~~~G~y~y~C~~ 85 (98)
T 1iuz_A 18 SKISVAAGEAIEFVNNAGFPHNIVFDEDAVPA-GVDADAISYDDY-------LNSKGETVVRKL----STPGVYGVYCEP 85 (98)
T ss_dssp SEEEECTTCEEEEEECSSCCEEEEECTTSSCT-TCCHHHHCEEEE-------ECSTTCEEEEEC----CSCEEEEEECTT
T ss_pred CEEEECCCCEEEEEECCCCCEEEEEeCCCCcc-cccccccccccc-------ccCCCCEEEEEc----CCCEEEEEEchh
Confidence 5899999999999876655676666542 21 221000000000 112344444444 578999999999
Q ss_pred cc--ccceEEEe
Q 048731 492 DQ--KMGWRIQV 501 (904)
Q Consensus 492 ~~--~~g~~i~v 501 (904)
|. .|-.+|.|
T Consensus 86 H~~~gM~G~I~V 97 (98)
T 1iuz_A 86 HAGAGMKMTITV 97 (98)
T ss_dssp TGGGTCEEEEEE
T ss_pred hccCCCEEEEEE
Confidence 99 88888876
No 21
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=81.99 E-value=1.7 Score=41.01 Aligned_cols=71 Identities=18% Similarity=0.180 Sum_probs=47.2
Q ss_pred ceeEEEeCceEEEEEEecCCcceEEeec--CCCCccccccceeeEecCCcCCCCCCCCCeEEEEecCCCCCCceeeeeee
Q 048731 414 PVLRVERGVPVKFSIQAGHDVALYITSD--ILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSLY 491 (904)
Q Consensus 414 p~~~~~rg~ty~f~v~~g~~~p~~it~~--~~GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~~~~~~~pd~~yy~~~~ 491 (904)
++|.++.|.|.+|..... .|=+.+.+. |.|.-. + ...+++.. .||- +.|-+..|.|..
T Consensus 23 ~~i~V~~GDtVtf~n~~~-~H~v~~~~~~~P~g~~~---------f------~s~pGet~--s~TF--~~pG~y~y~C~~ 82 (127)
T 3tu6_A 23 AVIRAQPGDTVTFVAKDK-GHNSALMKGGAPEGAET---------W------KGKINEEI--TVTL--SKPGVYMYQCAP 82 (127)
T ss_dssp SEEEECTTCEEEEECSSS-SCCCEECTTCSCTTCCC---------C------BCCTTCCC--EEEC--CSCEEEEEECTT
T ss_pred CEEEECCCCEEEEEECCC-CceEEEccCcCCCCccc---------e------ecCCCCEE--EEEe--CCCeEEEEEeCC
Confidence 589999999999998754 465544332 222100 0 01134443 4444 589999999999
Q ss_pred ccc--cceEEEeecC
Q 048731 492 DQK--MGWRIQVVDG 504 (904)
Q Consensus 492 ~~~--~g~~i~vv~~ 504 (904)
|.. |-.+|.|.+.
T Consensus 83 H~~~GM~G~I~V~~~ 97 (127)
T 3tu6_A 83 HVGMGMIGAIVVGEP 97 (127)
T ss_dssp TGGGTCEEEEEESSC
T ss_pred CCcCCcEEEEEECcC
Confidence 998 8899988775
No 22
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=81.16 E-value=2.1 Score=37.98 Aligned_cols=84 Identities=12% Similarity=0.049 Sum_probs=50.1
Q ss_pred ceeEEEeCceEEEEEEecCCcceEEeecCCCCccccccc-eeeEecCCcCCCCCCCCCeEEEEecCCCCCCceeeeeeec
Q 048731 414 PVLRVERGVPVKFSIQAGHDVALYITSDILGGNASLRNV-TETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSLYD 492 (904)
Q Consensus 414 p~~~~~rg~ty~f~v~~g~~~p~~it~~~~GG~~~~~~~-~~~~~ag~~~~~g~~~~~~~~~~~~~~~~pd~~yy~~~~~ 492 (904)
|.|.+++|.+++|...+...|++.+..... ..... ....+. ..+..-.+|+..+++|+++ +.|-+..|+|..|
T Consensus 19 ~~i~v~~Gd~V~~~N~~~~~H~v~~~~~~~----~~~~g~~~~~~~-~~~~~i~pG~~~~~~f~~~-~~~G~y~y~C~~H 92 (105)
T 3cvb_A 19 ANVTVHPGDTVKWVNNKLPPHNILFDDKQV----PGASKELADKLS-HSQLMFSPGESYEITFSSD-FPAGTYTYYCAPH 92 (105)
T ss_dssp SEEEECTTEEEEEEECSSCCEEEEECTTSS----GGGCHHHHHHHC-EEEEECSTTCEEEEEECTT-SCSEEEEEECTTT
T ss_pred CEEEEcCCCEEEEEECCCCCCeEEEeCCCC----Cccccccccccc-ccccccCCCCeEEEEEecC-CCCeeEEEEeCCc
Confidence 789999999999976544567777753211 00000 000000 0000112456677777764 4688999999999
Q ss_pred cc--cceEEEeec
Q 048731 493 QK--MGWRIQVVD 503 (904)
Q Consensus 493 ~~--~g~~i~vv~ 503 (904)
.. |-..|.|.|
T Consensus 93 ~~~GM~G~i~V~~ 105 (105)
T 3cvb_A 93 RGAGMVGKITVEG 105 (105)
T ss_dssp GGGTCEEEEEECC
T ss_pred hhcCCEEEEEEcC
Confidence 94 778887753
No 23
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=80.63 E-value=2.4 Score=37.34 Aligned_cols=79 Identities=10% Similarity=0.083 Sum_probs=48.4
Q ss_pred ceeEEEeCceEEEEEEecCCcceEEeecCC-CCccccccceeeEecCCcCCCCCCCCCeEEEEecCCCCCCceeeeeeec
Q 048731 414 PVLRVERGVPVKFSIQAGHDVALYITSDIL-GGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSLYD 492 (904)
Q Consensus 414 p~~~~~rg~ty~f~v~~g~~~p~~it~~~~-GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~~~~~~~pd~~yy~~~~~ 492 (904)
++|.|+.|.|.+|...+.-.|.+.+.+... -|... .... .+..+..-.+|+..+++|+ .|-+..|.|..|
T Consensus 17 ~~i~v~~G~tV~~~n~~~~~H~~~~~~~~~p~g~~~---~~~~--~~~~~~~~~~G~~~~~~f~----~~G~y~~~C~~H 87 (99)
T 1byp_A 17 SDLSIASGEKITFKNNAGFPHNDLFDKKEVPAGVDV---TKIS--MPEEDLLNAPGEEYSVTLT----EKGTYKFYCAPH 87 (99)
T ss_dssp SEEEECTTEEEEEEECSSCCBCCEECTTSSCTTCCH---HHHS--CCTTCCBCSTTCEEEEEEC----SCEEEEEECGGG
T ss_pred CEEEECCCCEEEEEECCCCcceEEEeCCCCcccccc---cccc--ccccceeeCCCCEEEEEeC----CCcEEEEEcCCc
Confidence 479999999999976665578888765211 11110 0000 0000001123555666663 688999999999
Q ss_pred c--ccceEEEe
Q 048731 493 Q--KMGWRIQV 501 (904)
Q Consensus 493 ~--~~g~~i~v 501 (904)
. .|-.+|.|
T Consensus 88 ~~~gM~G~i~V 98 (99)
T 1byp_A 88 AGAGMVGKVTV 98 (99)
T ss_dssp TTTTCEEEEEE
T ss_pred cccCCEEEEEE
Confidence 9 78888876
No 24
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=76.25 E-value=4.8 Score=39.88 Aligned_cols=69 Identities=16% Similarity=0.153 Sum_probs=51.9
Q ss_pred ceeEEEeCceEEEEEEecCC--cceEEeecCCCCccccccceeeEecCCcCCCCCCCCCeEEEEecCCCCCCceeeeee-
Q 048731 414 PVLRVERGVPVKFSIQAGHD--VALYITSDILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSL- 490 (904)
Q Consensus 414 p~~~~~rg~ty~f~v~~g~~--~p~~it~~~~GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~~~~~~~pd~~yy~~~- 490 (904)
.+|.|..|.+++|.+... | |-|.|-+ -|. ++.+ .+|....+.|+++ -|-+.|+||.
T Consensus 93 n~l~VP~G~~Vr~~vTS~-DViHsf~IP~---lgi--------k~da-------~PG~~n~~~~~~~--kpG~y~g~Cse 151 (168)
T 3s8f_B 93 NPIEVPQGAEIVFKITSP-DVIHGFHVEG---TNI--------NVEV-------LPGEVSTVRYTFK--RPGEYRIICNQ 151 (168)
T ss_dssp SSEEEETTSEEEEEEECS-SSCEEEEETT---SSC--------EEEE-------CTTBCEEEEEECC--SCEEEEEECCS
T ss_pred CEEEEeCCCeEEEEEecC-CceEEEEECC---CCe--------EEEe-------cCCceeEEEEEeC--CCEEEEEECCc
Confidence 479999999999999876 5 6888743 111 1111 2456678999986 4899999998
Q ss_pred ----eccccceEEEeec
Q 048731 491 ----YDQKMGWRIQVVD 503 (904)
Q Consensus 491 ----~~~~~g~~i~vv~ 503 (904)
.|..|-.+|.|.+
T Consensus 152 ~CG~~Hs~M~g~V~V~e 168 (168)
T 3s8f_B 152 YCGLGHQNMFGTIVVKE 168 (168)
T ss_dssp CCSTTGGGCEEEEEEEC
T ss_pred CCCCCcCCCEEEEEEeC
Confidence 7999999998863
No 25
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=75.80 E-value=4.8 Score=37.68 Aligned_cols=71 Identities=14% Similarity=0.061 Sum_probs=46.6
Q ss_pred ceeEEEeCceEEEEEEecCCcceEEeec--CCCCccccccceeeEecCCcCCCCCCCCCeEEEEecCCCCCCceeeeeee
Q 048731 414 PVLRVERGVPVKFSIQAGHDVALYITSD--ILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSLY 491 (904)
Q Consensus 414 p~~~~~rg~ty~f~v~~g~~~p~~it~~--~~GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~~~~~~~pd~~yy~~~~ 491 (904)
.+|.++.|.|.+|..... .|=+.+.+. |.|. . .+ ...+++. +.||- +.|-+..|.|..
T Consensus 21 ~~i~V~~GdtV~f~~~~~-~H~v~~~~~~~P~g~-~--------~f------~~~pg~t--~s~TF--~~pG~y~y~C~~ 80 (123)
T 3erx_A 21 AFVRAEPGDVINFVPTDK-SHNVEAIKEILPEGV-E--------SF------KSKINES--YTLTV--TEPGLYGVKCTP 80 (123)
T ss_dssp SEEEECTTEEEEEEESST-TCCCEECTTSSCTTC-C--------CC------BCCTTCC--EEEEE--CSCEEEEEECGG
T ss_pred CEEEECCCCEEEEEECCC-CceEEEcCCcCCCCc-c--------ce------ecCCCCE--EEEEe--CCCeEEEEEeCC
Confidence 589999999999998763 465544332 2111 0 00 0113444 44444 579999999999
Q ss_pred ccc--cceEEEeecC
Q 048731 492 DQK--MGWRIQVVDG 504 (904)
Q Consensus 492 ~~~--~g~~i~vv~~ 504 (904)
|.. |-.+|.|-+.
T Consensus 81 H~~~GM~G~I~V~~~ 95 (123)
T 3erx_A 81 HFGMGMVGLVQVGDA 95 (123)
T ss_dssp GTTTTCEEEEEESSS
T ss_pred CCcCCcEEEEEECCC
Confidence 999 8899988763
No 26
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=75.17 E-value=5.5 Score=37.55 Aligned_cols=82 Identities=12% Similarity=0.093 Sum_probs=50.4
Q ss_pred ceeEEEeCceEEEEEEec--C-CcceEEeecCC----------------CCccccccceeeEecCCcCCCCCCCCCeEEE
Q 048731 414 PVLRVERGVPVKFSIQAG--H-DVALYITSDIL----------------GGNASLRNVTETIYAGGPEAEGVKASPMELV 474 (904)
Q Consensus 414 p~~~~~rg~ty~f~v~~g--~-~~p~~it~~~~----------------GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~ 474 (904)
++|.|+.|.|++|++..- - .|+|.|.+... .+|...... .++.- +..=.+++..+++
T Consensus 35 ~~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~--~~~~~--t~~l~pGet~~v~ 110 (139)
T 2aan_A 35 TELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAANYLPADKS--NIIAE--SPLANGNETVEVT 110 (139)
T ss_dssp SEEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGTTCCSCCT--TEEEE--CCCBCTTCEEEEE
T ss_pred CeEEECCCCEEEEEEEeCCCCCCeeEEEeccccccchhhhhhhhcccccccccCcccc--ccccc--ccccCCCCEEEEE
Confidence 689999999999876543 3 68999876320 012110000 00000 0001346788899
Q ss_pred EecCCCCCCceeeeeeecc---ccceEEEe
Q 048731 475 WAPDRNTPDEVYYQSLYDQ---KMGWRIQV 501 (904)
Q Consensus 475 ~~~~~~~pd~~yy~~~~~~---~~g~~i~v 501 (904)
|+++ .|-+..|.|..|. .|-.+|.|
T Consensus 111 f~~~--~pG~y~f~C~~~~H~~GM~G~i~V 138 (139)
T 2aan_A 111 FTAP--AAGTYLYICTVPGHYPLMQGKLVV 138 (139)
T ss_dssp EECC--SSEEEEEECCSTTTTTTSEEEEEE
T ss_pred EECC--CCeEEEEEcCCCChHHcCEEEEEE
Confidence 9976 6889999999654 67777766
No 27
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=73.13 E-value=7.7 Score=36.48 Aligned_cols=85 Identities=13% Similarity=0.123 Sum_probs=48.4
Q ss_pred ceeEEEeCceEEEEEEe----cCCcceEEeec---CCC--------Ccccc--cc-ceeeEecCCcCCCCCCCCCeEEEE
Q 048731 414 PVLRVERGVPVKFSIQA----GHDVALYITSD---ILG--------GNASL--RN-VTETIYAGGPEAEGVKASPMELVW 475 (904)
Q Consensus 414 p~~~~~rg~ty~f~v~~----g~~~p~~it~~---~~G--------G~~~~--~~-~~~~~~ag~~~~~g~~~~~~~~~~ 475 (904)
++|.|++|.|++|++.. .-.|.|.|... ... |.+.. .. ....+++-. ..=.+++..+++|
T Consensus 33 ~~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t--~~l~pG~~~~~~~ 110 (140)
T 1qhq_A 33 TSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPDTPNALAWT--AMLNAGESGSVTF 110 (140)
T ss_dssp SEEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCCTTCTTEEEEC--CCBCTTEEEEEEE
T ss_pred CeEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhcccccccCccccccccccc--eeeCCCceeEEEE
Confidence 58999999999997765 23589988741 100 00000 00 000011000 0012456778889
Q ss_pred ecCCCCCCceeeeeee--ccc--cceEEEee
Q 048731 476 APDRNTPDEVYYQSLY--DQK--MGWRIQVV 502 (904)
Q Consensus 476 ~~~~~~pd~~yy~~~~--~~~--~g~~i~vv 502 (904)
+++ .|-..+|.|.. |.. |-.+|.|.
T Consensus 111 ~~~--~~G~y~f~C~~~~H~~~GM~g~i~V~ 139 (140)
T 1qhq_A 111 RTP--APGTYLYICTFPGHYLAGMKGTLTVT 139 (140)
T ss_dssp ECC--SSEEEEEECCSTTTTTTTCEEEEEEE
T ss_pred EeC--CCeeEEEEeCCcCHhhcCCEEEEEEc
Confidence 875 58899999995 754 55556553
No 28
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=72.95 E-value=5.8 Score=39.23 Aligned_cols=86 Identities=10% Similarity=0.088 Sum_probs=52.4
Q ss_pred ceeEE-EeCceEEEEEEecCC-------cceEEeecCC-----------C--CccccccceeeEecCCcCCCCCCCCCeE
Q 048731 414 PVLRV-ERGVPVKFSIQAGHD-------VALYITSDIL-----------G--GNASLRNVTETIYAGGPEAEGVKASPME 472 (904)
Q Consensus 414 p~~~~-~rg~ty~f~v~~g~~-------~p~~it~~~~-----------G--G~~~~~~~~~~~~ag~~~~~g~~~~~~~ 472 (904)
.+|.| +.|.++||++..-.+ |-|.|..... | +|-...+. ++++-.. .=.+|+..+
T Consensus 58 ~~itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~~~~v~~~d~--~vl~~t~--~l~pGet~s 133 (167)
T 3ay2_A 58 KDIQVSKACKEFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAADTDYVKPDDA--RVVAHTK--LIGGGEESS 133 (167)
T ss_dssp SEEEEETTCSSEEEEEEECSCSCHHHHCBCCEEEEGGGHHHHHHHHGGGGGGTTSCTTCT--TEEEECC--CBCTTCEEE
T ss_pred ceEEEecCCCEEEEEEEECCCCccccccceEEeccCcchhhhHHHhhhcccccccccccc--chhccce--eeCCCCEEE
Confidence 48999 999999987754322 7788876320 0 01000000 0111100 112468889
Q ss_pred EEEecCCCCCCceeeeeee--cc-ccceEEEeec
Q 048731 473 LVWAPDRNTPDEVYYQSLY--DQ-KMGWRIQVVD 503 (904)
Q Consensus 473 ~~~~~~~~~pd~~yy~~~~--~~-~~g~~i~vv~ 503 (904)
++|+.+.-.|-+..|.|.. |. .|-++|.|.+
T Consensus 134 vtf~~~~lkpG~Y~f~Ct~PgH~~gM~G~i~V~~ 167 (167)
T 3ay2_A 134 LTLDPAKLADGDYKFACTFPGHGALMNGKVTLVD 167 (167)
T ss_dssp EEECGGGGTTSCEEEECCSTTGGGTSEEEEEEEC
T ss_pred EEEecCCCCCcEEEEEcCCCCchhcCEEEEEEeC
Confidence 9998764467788999998 53 7999998864
No 29
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=71.79 E-value=3.3 Score=42.80 Aligned_cols=23 Identities=30% Similarity=0.379 Sum_probs=17.1
Q ss_pred cccchhhhHHhHHhhccceeEEE
Q 048731 751 SLHVKFGITATVLACVQPLNAFV 773 (904)
Q Consensus 751 ~~H~~iGi~v~~L~~lQ~l~G~~ 773 (904)
..|..+|+++++++++-.+.++.
T Consensus 61 ~~H~~~G~~~~~l~~~Rl~w~~~ 83 (235)
T 4gd3_A 61 LIHFSAGMVFTVVLLMRIYWAFV 83 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36888888888888777665543
No 30
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=69.76 E-value=15 Score=34.53 Aligned_cols=86 Identities=7% Similarity=0.012 Sum_probs=52.9
Q ss_pred ceeEEEeC-ceEEEEEEecC-------CcceEEeecCC-----------C---CccccccceeeEecCCcCCCCCCCCCe
Q 048731 414 PVLRVERG-VPVKFSIQAGH-------DVALYITSDIL-----------G---GNASLRNVTETIYAGGPEAEGVKASPM 471 (904)
Q Consensus 414 p~~~~~rg-~ty~f~v~~g~-------~~p~~it~~~~-----------G---G~~~~~~~~~~~~ag~~~~~g~~~~~~ 471 (904)
.+|.|+.| .++||++..-. .|-|.|..... | +|....+.+ +++- +..=.+|+..
T Consensus 18 ~~i~V~~G~~~vtv~~~N~g~~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~v~~~~~~--~~~~--t~~l~pGet~ 93 (129)
T 1cuo_A 18 RSISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFVTPGDKR--VIAF--TPIIGGGEKT 93 (129)
T ss_dssp SEEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTSCTTCTT--CSEE--CCCBCTTCEE
T ss_pred CeEEEcCCCeEEEEEEEECCCCcccccccceEEecCcchhhhHHHhhhcccccccccccccc--ceee--eeEECCCCEE
Confidence 58999999 98888775532 27888876320 0 010000000 0000 0011257889
Q ss_pred EEEEecC-CCCCCceeeeeee--cc-ccceEEEeec
Q 048731 472 ELVWAPD-RNTPDEVYYQSLY--DQ-KMGWRIQVVD 503 (904)
Q Consensus 472 ~~~~~~~-~~~pd~~yy~~~~--~~-~~g~~i~vv~ 503 (904)
+++|+++ ...|-+..|-|.. |. .|-.+|.|.+
T Consensus 94 svtf~~~~~~~~G~Y~f~C~~pgH~~~M~G~i~V~~ 129 (129)
T 1cuo_A 94 SVKFKVSALSKDEAYTYFCSYPGHFSMMRGTLKLEE 129 (129)
T ss_dssp EEEEEGGGCCTTSCEEEECCSTTCTTTSEEEEEEEC
T ss_pred EEEEeccccCCCceEEEEeCCCCchHcCEEEEEEeC
Confidence 9999876 4578899999987 43 6999998854
No 31
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=66.94 E-value=10 Score=42.76 Aligned_cols=83 Identities=20% Similarity=0.273 Sum_probs=53.8
Q ss_pred EcCccCceeEEEeCceEEEEEEecCCcceEEeecCCCCccccccceeeEecCCcCCCCCCCCCeEEEEecCCCCCCceee
Q 048731 408 INKKEAPVLRVERGVPVKFSIQAGHDVALYITSDILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYY 487 (904)
Q Consensus 408 iN~~~~p~~~~~rg~ty~f~v~~g~~~p~~it~~~~GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~~~~~~~pd~~yy 487 (904)
|||+.-|.|.|++|.|++|++....+.+.-|.-+-..+. ....-.+|+..+++|+++. |-+..|
T Consensus 49 vNG~~~p~i~v~~Gd~v~~~~~N~~~~~h~~~~~g~~~~--------------~~~~i~pG~~~~~~f~~~~--~Gt~~y 112 (447)
T 2dv6_A 49 IDHKINPTLVVHEGETVQVNLVNGEGAQHDVVVDQYAAR--------------SAIVNGKNASSTFSFVASK--VGEFNY 112 (447)
T ss_dssp GTTCBSCCEEEETTCEEEEEEECSSSSCBCCEETTTTEE--------------CCCBCSTTBEEEEEEECCS--CEEEEE
T ss_pred ecCCcCCeEEEcCCCEEEEEEEcCCCCceEEEEccCCcc--------------cceecCCCCeEEEEEEcCC--CEEEEE
Confidence 788888999999999999987665332222221110000 0111134677888998775 789999
Q ss_pred eeee--cc--ccceEEEeecCCC
Q 048731 488 QSLY--DQ--KMGWRIQVVDGGL 506 (904)
Q Consensus 488 ~~~~--~~--~~g~~i~vv~~g~ 506 (904)
+|.. |. .|-..|.|.+...
T Consensus 113 ~~~~~~h~~~Gm~G~i~V~~~~~ 135 (447)
T 2dv6_A 113 YCSIAGHRQAGMEGNIQVLPGNR 135 (447)
T ss_dssp ECCSTTHHHHTCEEEEEEESSCC
T ss_pred EeCCCChhhCCCEEEEEEeCCcc
Confidence 9985 54 4667888877543
No 32
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=61.93 E-value=32 Score=32.22 Aligned_cols=86 Identities=5% Similarity=-0.017 Sum_probs=50.9
Q ss_pred ceeEE-EeCceEEEEEEecC-------CcceEEeecCC--------------CCccccccceeeEecCCcCCCCCCCCCe
Q 048731 414 PVLRV-ERGVPVKFSIQAGH-------DVALYITSDIL--------------GGNASLRNVTETIYAGGPEAEGVKASPM 471 (904)
Q Consensus 414 p~~~~-~rg~ty~f~v~~g~-------~~p~~it~~~~--------------GG~~~~~~~~~~~~ag~~~~~g~~~~~~ 471 (904)
.+|.| +.|.+++|++..-. .|-|.|..... -+|....+. ++++-.. .=.+|+..
T Consensus 17 ~~i~V~k~G~~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~--~~~~~t~--~l~pGes~ 92 (128)
T 2iaa_C 17 KSIVVDKTCKEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKAGDE--RVIAHTS--VIGGGETD 92 (128)
T ss_dssp SEEEECTTCSEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCTTCT--TEEEECC--CBCTTCEE
T ss_pred CEEEEecCCcEEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhccccccccccccc--hhhccce--eeCCCCEE
Confidence 47999 99999888775432 27788876320 011000000 1111100 01357889
Q ss_pred EEEEecCCCCCC-ceeeeeee--cc-ccceEEEeec
Q 048731 472 ELVWAPDRNTPD-EVYYQSLY--DQ-KMGWRIQVVD 503 (904)
Q Consensus 472 ~~~~~~~~~~pd-~~yy~~~~--~~-~~g~~i~vv~ 503 (904)
+++|+++.-.|- ..-|-|.. |. .|-.+|.|.+
T Consensus 93 ~vtf~~~~l~~G~~Y~f~C~~PgH~~gM~G~i~V~~ 128 (128)
T 2iaa_C 93 SVTFDVSKLKEGEDYAFFCSFPGHWSIMKGTIELGS 128 (128)
T ss_dssp EEEEESSCCCTTCCEEEECCSTTCTTTSEEEEEECC
T ss_pred EEEEeccccCCCceEEEEECCCChhHCCEEEEEEeC
Confidence 999998744455 47889987 43 7999998853
No 33
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=60.31 E-value=28 Score=32.63 Aligned_cols=86 Identities=8% Similarity=0.029 Sum_probs=50.7
Q ss_pred ceeEE-EeCceEEEEEEecC-------CcceEEeecC--------------CCCccccccceeeEecCCcCCCCCCCCCe
Q 048731 414 PVLRV-ERGVPVKFSIQAGH-------DVALYITSDI--------------LGGNASLRNVTETIYAGGPEAEGVKASPM 471 (904)
Q Consensus 414 p~~~~-~rg~ty~f~v~~g~-------~~p~~it~~~--------------~GG~~~~~~~~~~~~ag~~~~~g~~~~~~ 471 (904)
.+|.| +.|.++||++..-. .|-|.|.... .-+|....+. ++++-. ..=.+|+..
T Consensus 18 ~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~t--~~l~pGet~ 93 (129)
T 2ccw_A 18 KEIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAGDT--RVIAHT--KVIGGGESD 93 (129)
T ss_dssp SEEEECTTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTTCT--TEEEEC--CCBCTTCEE
T ss_pred ceEEEecCCCEEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhcccccccccccc--cceeee--eEECCCCEE
Confidence 48999 99999998775442 2778887632 0011000000 111110 011357889
Q ss_pred EEEEecCCCCC-Cceeeeeee--cc-ccceEEEeec
Q 048731 472 ELVWAPDRNTP-DEVYYQSLY--DQ-KMGWRIQVVD 503 (904)
Q Consensus 472 ~~~~~~~~~~p-d~~yy~~~~--~~-~~g~~i~vv~ 503 (904)
+++|+.+.-.| -..-|-|.. |. .|-.+|.|.+
T Consensus 94 svtf~~~~l~~G~~Y~f~C~~pgH~~gM~G~i~V~~ 129 (129)
T 2ccw_A 94 SVTFDVSKIAAGENYAYFCSFPGHWAMMKGTLKLGS 129 (129)
T ss_dssp EEEEEGGGSCTTCCEEEECCSTTGGGTSEEEEEECC
T ss_pred EEEEeccccCCCceEEEEeCCCChhHcCEEEEEEeC
Confidence 99998873334 447889987 43 7999998853
No 34
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=60.16 E-value=10 Score=38.43 Aligned_cols=97 Identities=20% Similarity=0.111 Sum_probs=53.3
Q ss_pred eeehhhhhHHHHHHHHHHhhhhhh-------CCC-ccccccchhhhHHhHHhhccceeEEEecCCCCC------------
Q 048731 721 IHVYLQYSGLAIVLLALLFAVAEL-------RGF-YVSSLHVKFGITATVLACVQPLNAFVRPKKPAN------------ 780 (904)
Q Consensus 721 iH~~lq~~a~~l~iiG~vl~~~~~-------~g~-~~~~~H~~iGi~v~~L~~lQ~l~G~~rp~~~~~------------ 780 (904)
.||..-++-+++.+.|+.+.+-.. ++. .....|..+|+++++++++-.+ .+.|.....+
T Consensus 17 ~HW~~a~~ii~l~~tG~~i~~p~~~~l~~~~g~~~~~~~~H~~~G~~~~~l~~~r~~-r~~r~~~p~~~~~~~~~~~~~y 95 (217)
T 1kqf_C 17 CHWTVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFV-RFVHHNIPDKKDIPWLLNIVEV 95 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHH-HHGGGSCCCGGGHHHHHSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHchhHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhHHHHHHHHHHH
Confidence 477665555555556654432110 111 1246899999999987776433 1112111110
Q ss_pred --Ccc-ccccccchhhHHHHHHHHHHHHHHHHHHHhhhhcc
Q 048731 781 --GEE-ISSKRLIWEYLHFIVGRFAIIAGIVALFTGMKHLG 818 (904)
Q Consensus 781 --g~~-~~~~R~~~~~~H~~lG~~~~iLgivni~lGl~l~~ 818 (904)
++. ..+....+|...+..=.+++++.++.+++|+-+..
T Consensus 96 l~~~~~~~p~~~~~n~~~~~~~~~l~~l~~~~~~TG~~~~~ 136 (217)
T 1kqf_C 96 LKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWR 136 (217)
T ss_dssp HTTCHHHHCCCCSSCHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 00112345667777667788888999999988764
No 35
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=59.30 E-value=16 Score=43.22 Aligned_cols=80 Identities=13% Similarity=0.110 Sum_probs=57.9
Q ss_pred eEEEcCc-cCceeEEEeCceEEEEEEecC-----CcceEEeecCCCCccccccceeeEecCCcCCCCCCCCCeEEEEecC
Q 048731 405 VFYINKK-EAPVLRVERGVPVKFSIQAGH-----DVALYITSDILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPD 478 (904)
Q Consensus 405 ~wyiN~~-~~p~~~~~rg~ty~f~v~~g~-----~~p~~it~~~~GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~~~~ 478 (904)
.|-.|+. .-|+|.|++|.+.+|.+..-. -|-|.|.. .|. + ..-.+|+..++.|+++
T Consensus 503 m~~~n~~f~pp~I~V~~Gd~V~~~ltN~d~~~Dv~Hgf~ip~---~gv--------~-------~~i~PG~t~t~~Fta~ 564 (595)
T 1fwx_A 503 MSSVAPSFSIESFTVKEGDEVTVIVTNLDEIDDLTHGFTMGN---YGV--------A-------MEIGPQMTSSVTFVAA 564 (595)
T ss_dssp EEEETTEESCSEEEEETTCEEEEEEEECCCSTTCCEEEEETT---TTE--------E-------EEECTTCEEEEEEECC
T ss_pred EEEecCcccCCEEEEECCCEEEEEEEeCCCCCCceeeEEecC---CCc--------c-------eeeCCCCeEEEEEECC
Confidence 5777776 457999999999999886631 25665532 121 0 0113467778899985
Q ss_pred CCCCCceeeeee-----eccccceEEEeecC
Q 048731 479 RNTPDEVYYQSL-----YDQKMGWRIQVVDG 504 (904)
Q Consensus 479 ~~~pd~~yy~~~-----~~~~~g~~i~vv~~ 504 (904)
.|-+.+|+|. .|..|-.+|.|.+.
T Consensus 565 --~pGtY~yhC~e~Cg~~H~gM~G~IiV~p~ 593 (595)
T 1fwx_A 565 --NPGVYWYYCQWFCHALHMEMRGRMLVEPK 593 (595)
T ss_dssp --SCEEEEEECCSCCSTTCTTCEEEEEEECC
T ss_pred --CCEEEEEECCCCCCCCccCCEEEEEEEcC
Confidence 6999999999 89999999998764
No 36
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=56.71 E-value=13 Score=34.83 Aligned_cols=70 Identities=16% Similarity=0.029 Sum_probs=44.0
Q ss_pred ceeEEEeCceEEEEEEecCCcceEEeec--CCCCccccccceeeEecCCcCCCCCCCCCeEEEEecCCCCCCceeeeeee
Q 048731 414 PVLRVERGVPVKFSIQAGHDVALYITSD--ILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSLY 491 (904)
Q Consensus 414 p~~~~~rg~ty~f~v~~g~~~p~~it~~--~~GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~~~~~~~pd~~yy~~~~ 491 (904)
++|+++.|.|.+|...+. .|=+-+.+. |.|. ..-.+.+++..+++| +.|-+.-|.|..
T Consensus 22 ~~i~V~~GDTV~f~n~~~-~Hnv~~~~~~~p~g~---------------~~~~~~pg~t~s~TF----~~~G~y~Y~C~~ 81 (124)
T 3ef4_A 22 GFVKVEAGDTVKFVPTDK-SHNAESVREVWPEGV---------------APVKGGFSKEVVFNA----EKEGLYVLKCAP 81 (124)
T ss_dssp SEEEECTTCEEEEECSSS-SCCCEECTTTSCTTS---------------CCCBCCTTCCEEEEC----CSSEEEEEECTT
T ss_pred CEEEECCCCEEEEEECCC-CccEEEeCCcCCCCc---------------cccccCCCCEEEEEe----CCCeEEEEEcCC
Confidence 589999999999997652 443333221 1111 001112344444444 589999999999
Q ss_pred ccc--cceEEEeec
Q 048731 492 DQK--MGWRIQVVD 503 (904)
Q Consensus 492 ~~~--~g~~i~vv~ 503 (904)
|.. |-.+|.|-+
T Consensus 82 H~~~GM~G~I~V~~ 95 (124)
T 3ef4_A 82 HYGMGMVVLVQVGK 95 (124)
T ss_dssp TGGGTCEEEEEESS
T ss_pred CCcCCCEEEEEECC
Confidence 996 668998866
No 37
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=54.88 E-value=25 Score=37.98 Aligned_cols=91 Identities=14% Similarity=0.172 Sum_probs=55.3
Q ss_pred ceeEEEcCc-cCceeEEEeCceEEEEEEecCCcceEEeecCCCCccccccceeeEecCCcCCC-CCCCCCeEEEEecCCC
Q 048731 403 VKVFYINKK-EAPVLRVERGVPVKFSIQAGHDVALYITSDILGGNASLRNVTETIYAGGPEAE-GVKASPMELVWAPDRN 480 (904)
Q Consensus 403 ~~~wyiN~~-~~p~~~~~rg~ty~f~v~~g~~~p~~it~~~~GG~~~~~~~~~~~~ag~~~~~-g~~~~~~~~~~~~~~~ 480 (904)
..+|-+||. .-|.|.+++|.++.+++....+.+.-.+-.-+|-.. .-|+|... =.+|+..+..|+.+.
T Consensus 58 ~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~~~~~~~ih~HG~~~---------~dG~~~~~~i~PG~~~~y~f~~~~- 127 (327)
T 1kbv_A 58 YRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATG---------QGGGAAATFTAPGRTSTFSFKALQ- 127 (327)
T ss_dssp EEEEEETTBSSCCBEEEETTCEEEEEEEECTTCSSCBCCEETTCCS---------GGGGTTTTCBCTTEEEEEEEECCS-
T ss_pred EEEEEECCccCCCeEEEeCCCEEEEEEEECCCCCCceeeEeCcccc---------CCCCCcceeecCCCEEEEEEECCC-
Confidence 357999997 789999999999999877663211111111133211 11333211 134566778888754
Q ss_pred CCCceeeeeeecc-------ccceEEEeecC
Q 048731 481 TPDEVYYQSLYDQ-------KMGWRIQVVDG 504 (904)
Q Consensus 481 ~pd~~yy~~~~~~-------~~g~~i~vv~~ 504 (904)
|-+..|+|-.|. .|-..|.|-+.
T Consensus 128 -~Gt~wyH~h~~~~~~~~~~Gl~G~~iV~~~ 157 (327)
T 1kbv_A 128 -PGLYIYHCAVAPVGMHIANGMYGLILVEPK 157 (327)
T ss_dssp -CEEEEEECCCSSHHHHHHTTCEEEEEEECT
T ss_pred -CeEEEEEeCCCChhhhhhcceEEEEEEecC
Confidence 889889996542 35566666653
No 38
>2ivf_C Ethylbenzene dehydrogenase gamma-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=54.65 E-value=16 Score=37.54 Aligned_cols=46 Identities=11% Similarity=0.106 Sum_probs=35.1
Q ss_pred ccceEEEEEEEeCCEEEEEEEecCCCCCCCCCeeecCCCcEEEEEEeCC
Q 048731 277 VNNTRLVYGHRRDGVSFIRYKRPLVSSDKKYDFSVNYTENMQVVWALGL 325 (904)
Q Consensus 277 ~nd~~l~~g~~~~G~t~i~f~R~L~t~D~~~D~~i~~~~~~~vIwA~G~ 325 (904)
.|++. ..+..+||.-++.|.|||++.+ +|..+..++.+.|-.|+-.
T Consensus 146 ~~~v~-~~a~y~~g~WtVv~~RpL~~~~--~~~~~~~g~~~~vafAvWd 191 (214)
T 2ivf_C 146 GSDLK-AVAQHRNGEWNVILCRSMATGD--GLAKLQAGGSSKIAFAVWS 191 (214)
T ss_dssp GCCCE-EEEEEETTEEEEEEEEESCCCT--TSCCCCTTEEEEEEEEEEC
T ss_pred CCCcE-EeEEEcCCEEEEEEEEECCCCc--CCcccccCCeEEEEEEEEc
Confidence 35554 4456789999999999999643 6888887778888877754
No 39
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=53.20 E-value=22 Score=33.51 Aligned_cols=86 Identities=6% Similarity=0.049 Sum_probs=51.2
Q ss_pred ceeEEEe-CceEEEEEEecC-------CcceEEeecC-CCCc--cc---------cccceeeEecCCcCCCCCCCCCeEE
Q 048731 414 PVLRVER-GVPVKFSIQAGH-------DVALYITSDI-LGGN--AS---------LRNVTETIYAGGPEAEGVKASPMEL 473 (904)
Q Consensus 414 p~~~~~r-g~ty~f~v~~g~-------~~p~~it~~~-~GG~--~~---------~~~~~~~~~ag~~~~~g~~~~~~~~ 473 (904)
.+|.|.+ |+|++|++..-. .|-|.|.... .-+- +. ......+|+|-.+. =.+|+..++
T Consensus 18 ~~i~V~~~Ge~V~~~l~N~G~~p~~~M~Hn~Vl~~~~~~~~~~~~~m~~~~~~~y~~~~d~~via~t~~--l~pGes~~v 95 (125)
T 3fsa_A 18 NAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKL--IGSGEKDSV 95 (125)
T ss_dssp SEEEECTTCSEEEEEEECCSSCCHHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTTSCTTCTTCCEECCC--BCTTCEEEE
T ss_pred CEEEEecCCCEEEEEEEECCcccccccCceEEEcccchHHHHHHHHHhcChhhccCCCCCccceeccce--eCCCcEEEE
Confidence 5899987 999988776442 3788888531 0000 00 00000111111111 024789999
Q ss_pred EEecC-CCCCCceeeeeeeccccceEEEe
Q 048731 474 VWAPD-RNTPDEVYYQSLYDQKMGWRIQV 501 (904)
Q Consensus 474 ~~~~~-~~~pd~~yy~~~~~~~~g~~i~v 501 (904)
+|+.+ ...|-+.-|-|.-|..|-++|.|
T Consensus 96 tf~~~~l~~~G~y~f~C~gH~~M~G~v~V 124 (125)
T 3fsa_A 96 TFDVSKLKEGEQYMFFCAAHAAMKGTLTL 124 (125)
T ss_dssp EEEGGGC---CCEEEECSSSTTCEEEEEE
T ss_pred EEeCcCcCCCccEEEEcCCCCCcEEEEEE
Confidence 99876 56889999999999999998876
No 40
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=53.13 E-value=20 Score=42.09 Aligned_cols=70 Identities=19% Similarity=0.255 Sum_probs=50.5
Q ss_pred CceeEEEeCceEEEEEEec---CC--cceEEeecCCCCccccccceeeEecCCcCCCCCCCCCeEEEEecCCCCCCceee
Q 048731 413 APVLRVERGVPVKFSIQAG---HD--VALYITSDILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYY 487 (904)
Q Consensus 413 ~p~~~~~rg~ty~f~v~~g---~~--~p~~it~~~~GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~~~~~~~pd~~yy 487 (904)
-++|.|..|.+++|.+..- .| |-|.|-+ .|. ++ .-.+|+..++.|+++ .|-+.+|
T Consensus 557 P~eI~VP~GdtVrfiLTN~D~veDViHSF~IPs---lGI--------K~-------DaiPGrtnsvtFtad--kPGvY~y 616 (638)
T 3sbq_A 557 VQEFTVKQGDEVTVTITNIDQIEDVSHGFVVVN---HGV--------SM-------EISPQQTSSITFVAD--KPGLHWY 616 (638)
T ss_dssp CCEEEEETTCEEEEEEEECCCSTTCCEEEEETT---TTE--------EE-------EECTTCEEEEEEECC--SCEEEEE
T ss_pred CCEEEEecCceeEEEEecCCcCCCceeeeEecC---CCc--------ee-------eeCCCCeEEEEEEcC--CCEEEEE
Confidence 3589999999999988764 13 5676633 111 11 113567788999984 6899999
Q ss_pred eee-----eccccceEEEee
Q 048731 488 QSL-----YDQKMGWRIQVV 502 (904)
Q Consensus 488 ~~~-----~~~~~g~~i~vv 502 (904)
||. .|..|-.+|.|.
T Consensus 617 ~CSE~CGa~Hs~M~G~ViVE 636 (638)
T 3sbq_A 617 YCSWFCHALHMEMVGRMMVE 636 (638)
T ss_dssp ECCSCCSTTCTTCEEEEEEE
T ss_pred ECCCcCCCCcccceEEEEEe
Confidence 999 699999999875
No 41
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=50.97 E-value=60 Score=34.99 Aligned_cols=99 Identities=13% Similarity=0.070 Sum_probs=56.3
Q ss_pred eeEEEcCcc-----CceeEEEeCceEEEEEEecCC---------cceEEeecCCCCcccccc-ceeeEecCCcCCCCCCC
Q 048731 404 KVFYINKKE-----APVLRVERGVPVKFSIQAGHD---------VALYITSDILGGNASLRN-VTETIYAGGPEAEGVKA 468 (904)
Q Consensus 404 ~~wyiN~~~-----~p~~~~~rg~ty~f~v~~g~~---------~p~~it~~~~GG~~~~~~-~~~~~~ag~~~~~g~~~ 468 (904)
..|-|||+. .|.+.+++|++|.|+.-+.+. |.|.+.. .|++-.... ...++..+ +|
T Consensus 216 ~~~~iNG~~~~~~~~~~l~v~~G~r~Rl~n~~~~~~~~~~~i~gh~~~Vi~--dG~~~~~p~~~~dtv~l~-------pG 286 (340)
T 2bw4_A 216 THIVFNGAVGALTGDHALTAAVGERVLVVHSQANRDTRPHLIGGHGDYVWA--TGKFRNPPDLDQETWLIP-------GG 286 (340)
T ss_dssp SEEEETTSTTTTSGGGCEEEETTCEEEEEEEESSSCBCEEEETCCEEEEET--TCCTTSCCEEEESCCCBC-------TT
T ss_pred CEEEECCccCCccCCCceEcCCCCEEEEEECCCCCccceEEecCcceEEeC--CCcccCCccccceEEEeC-------CC
Confidence 478999998 499999999999987644321 3555543 355432111 12222221 13
Q ss_pred CCeEEEEecCCCCCCceeeeeee---ccccc--eEEEeecCCCCCcccCc
Q 048731 469 SPMELVWAPDRNTPDEVYYQSLY---DQKMG--WRIQVVDGGLSDMYNNS 513 (904)
Q Consensus 469 ~~~~~~~~~~~~~pd~~yy~~~~---~~~~g--~~i~vv~~g~sd~y~~c 513 (904)
+-..+.++.+ -|..-.|+|-. |..+| ..+.|.+....+-|..+
T Consensus 287 er~~v~v~~~--~pG~y~~~~h~~~~h~~~Gm~~~~~V~~~~~~~~~~~~ 334 (340)
T 2bw4_A 287 TAGAAFYTFR--QPGVYAYVNHNLIEAFELGAAGHFKVTGEWNDDLMTSV 334 (340)
T ss_dssp EEEEEEEECC--SCEEEEEEESSHHHHHTTSCEEEEEEESCCCTTTCCCS
T ss_pred ceEEEEEECC--CCeeeEEEcCchHHHHhCCCEEEEEECCCCchhhhccC
Confidence 4444555544 37888899954 43444 44666665544444443
No 42
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=49.47 E-value=46 Score=35.88 Aligned_cols=86 Identities=14% Similarity=0.161 Sum_probs=55.1
Q ss_pred ceeEEEcCc-cCceeEEEeCceEEEEEEec----CCcceEEeecCC--CCccccccceeeEecCCcCCCCCCCCCeEEEE
Q 048731 403 VKVFYINKK-EAPVLRVERGVPVKFSIQAG----HDVALYITSDIL--GGNASLRNVTETIYAGGPEAEGVKASPMELVW 475 (904)
Q Consensus 403 ~~~wyiN~~-~~p~~~~~rg~ty~f~v~~g----~~~p~~it~~~~--GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~ 475 (904)
..+|-+||+ .-|.|.+++|.++.+++... +-|.+.+..... ||. +-..=.+|+..+..|
T Consensus 59 ~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~~~~~hg~~~~~~~~~~~~~--------------~~~~i~PG~~~~y~~ 124 (340)
T 2bw4_A 59 IHAMTFNGSVPGPLMVVHENDYVELRLINPDTNTLLHNIDFHAATGALGGG--------------ALTQVNPGEETTLRF 124 (340)
T ss_dssp EEEEEETTBSSCCEEEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGGG--------------GGCCBCTTEEEEEEE
T ss_pred EEEEEECCCCCCCcEEEcCCCEEEEEEEeCCCCCccCcceeCCcCCCCCCc--------------cceEeCCCCEEEEEE
Confidence 468999997 68999999999999988775 234444332110 110 101112466778889
Q ss_pred ecCCCCCCceeeeeeec------c--ccceEEEeecC
Q 048731 476 APDRNTPDEVYYQSLYD------Q--KMGWRIQVVDG 504 (904)
Q Consensus 476 ~~~~~~pd~~yy~~~~~------~--~~g~~i~vv~~ 504 (904)
+.+. |-+..|+|-.| . .|-..|.|-+.
T Consensus 125 ~~~~--~Gt~wyH~h~~~~~~~~~~~Gl~G~~iV~~~ 159 (340)
T 2bw4_A 125 KATK--PGVFVYHCAPEGMVPWHVTSGMNGAIMVLPR 159 (340)
T ss_dssp ECCS--CEEEEEECCCTTCHHHHHHTTCEEEEEEECT
T ss_pred ECCC--CeEEEEEcCCCCchhhHHhCcCEEEEEEccC
Confidence 8863 89999999865 2 34455555443
No 43
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=49.19 E-value=36 Score=31.85 Aligned_cols=86 Identities=8% Similarity=0.049 Sum_probs=48.8
Q ss_pred ceeEE-EeCceEEEEEEec-C------CcceEEeecCC----------CCcc--ccccceeeEecCCcCCCCCCCCCeEE
Q 048731 414 PVLRV-ERGVPVKFSIQAG-H------DVALYITSDIL----------GGNA--SLRNVTETIYAGGPEAEGVKASPMEL 473 (904)
Q Consensus 414 p~~~~-~rg~ty~f~v~~g-~------~~p~~it~~~~----------GG~~--~~~~~~~~~~ag~~~~~g~~~~~~~~ 473 (904)
.+|.| +.|.+++|++..- . .|-|.|..... -|.+ .......++++-.. .=.+|+..++
T Consensus 18 ~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~--~l~pGet~sv 95 (128)
T 1nwp_A 18 KDIAIDKSCKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQYLKDGDARVIAHTK--VIGAGEKDSV 95 (128)
T ss_dssp SEEEECTTCSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTTSCTTCTTEEEECC--CBCTTCEEEE
T ss_pred CEEEEecCCCEEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhccccccccccccchhheeee--eeCCCCEEEE
Confidence 47999 9999998876543 2 27788876310 0000 00000001111100 1135788999
Q ss_pred EEecCCCCCCc-eeeeeee--cc-ccceEEEe
Q 048731 474 VWAPDRNTPDE-VYYQSLY--DQ-KMGWRIQV 501 (904)
Q Consensus 474 ~~~~~~~~pd~-~yy~~~~--~~-~~g~~i~v 501 (904)
+|+.+.-.|-. .-|-|.. |. .|-.+|.|
T Consensus 96 tf~~~~l~~G~~Y~f~C~~PgH~~gM~G~i~V 127 (128)
T 1nwp_A 96 TFDVSKLAAGEKYGFFCSFPGHISMMKGTVTL 127 (128)
T ss_dssp EEEGGGSCTTSCEEEECCSTTCGGGSEEEEEE
T ss_pred EEeccccCCCceEEEEECCCChhHCCEEEEEE
Confidence 99987434544 8899987 43 68888876
No 44
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=48.46 E-value=34 Score=36.19 Aligned_cols=87 Identities=15% Similarity=0.153 Sum_probs=52.4
Q ss_pred ceeEEEcCccCc----eeEEEeCceEEEEEEe-c-CC--cceEEeec-----CCCCccccccceeeEecCCcCCCCCCCC
Q 048731 403 VKVFYINKKEAP----VLRVERGVPVKFSIQA-G-HD--VALYITSD-----ILGGNASLRNVTETIYAGGPEAEGVKAS 469 (904)
Q Consensus 403 ~~~wyiN~~~~p----~~~~~rg~ty~f~v~~-g-~~--~p~~it~~-----~~GG~~~~~~~~~~~~ag~~~~~g~~~~ 469 (904)
...|-|||+.-| .|.++.|.+|.|++.. | .+ |||-|--. ..|+.-.....+.++..+ +|+
T Consensus 180 ~~~~~iNG~~~~~~~~~l~v~~Ge~vr~~l~N~g~~~~~H~fHlhG~~f~v~~~g~~~~~~~~~Dtv~v~-------pg~ 252 (288)
T 3gdc_A 180 NEFYSVNGLPFHFMDFPVKVKQHELVRIHLINVLEYDPINSFHIHGNFFHYYPTGTMLTPSEYTDTISQV-------QGQ 252 (288)
T ss_dssp CSEEEETTSTTHHHHSCEEEETTCCEEEEEEECCCSSSEEEEEETTCCEEEEETTCCSSCSEEESEEEEE-------TTC
T ss_pred cceEEECcccccccCcccccCCCCEEEEEEEeCCCCCcceeEEEcCCEEEEEcCCCccCCCceeeEEEeC-------CCc
Confidence 457999999653 6999999999996544 4 34 66655221 123321111112222221 356
Q ss_pred CeEEEEecCCCCCCceeeee--eeccccceE
Q 048731 470 PMELVWAPDRNTPDEVYYQS--LYDQKMGWR 498 (904)
Q Consensus 470 ~~~~~~~~~~~~pd~~yy~~--~~~~~~g~~ 498 (904)
..++.|+.+ .|-...|+| .-|...|.+
T Consensus 253 ~~~v~~~~~--~pG~~~~hCH~~~H~~~GM~ 281 (288)
T 3gdc_A 253 RGILELRFP--YPGKFMFHAHKTEFAELGWM 281 (288)
T ss_dssp EEEEEECCC--SCEEEEEECSSHHHHTTTCE
T ss_pred eEEEEEECC--CCEEEEEEecChHHHhcCCC
Confidence 778888876 688889999 456554443
No 45
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=46.50 E-value=33 Score=36.96 Aligned_cols=86 Identities=17% Similarity=0.239 Sum_probs=54.8
Q ss_pred ceeEEEcCc-cCceeEEEeCceEEEEEEec----CCcceEEeecCCCCccccccceeeEecCC-cCCCCCCCCCeEEEEe
Q 048731 403 VKVFYINKK-EAPVLRVERGVPVKFSIQAG----HDVALYITSDILGGNASLRNVTETIYAGG-PEAEGVKASPMELVWA 476 (904)
Q Consensus 403 ~~~wyiN~~-~~p~~~~~rg~ty~f~v~~g----~~~p~~it~~~~GG~~~~~~~~~~~~ag~-~~~~g~~~~~~~~~~~ 476 (904)
..+|-+||. .-|.|.+++|.++.+++... +-|.+-+-..+ +. .|+ +...=.+|+..+..|+
T Consensus 53 ~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~~~~~h~~~~h~~~-~~------------~~~~~~~~i~pG~~~~y~f~ 119 (336)
T 1oe1_A 53 LQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGAT-GA------------LGGAKLTNVNPGEQATLRFK 119 (336)
T ss_dssp EEEEEETTBSSCCCEEEETTCEEEEEEEECTTCCSCBCCEETTSC-SG------------GGGGGGCCBCTTEEEEEEEE
T ss_pred EEEEEECCccCCCeEEEcCCCEEEEEEEcCCCCCccccceECCCC-CC------------CCCcceEEeCCCCEEEEEEE
Confidence 357999997 78999999999999877665 22444332211 00 011 1111134677788998
Q ss_pred cCCCCCCceeeeeeecc--------ccceEEEeec
Q 048731 477 PDRNTPDEVYYQSLYDQ--------KMGWRIQVVD 503 (904)
Q Consensus 477 ~~~~~pd~~yy~~~~~~--------~~g~~i~vv~ 503 (904)
.+. |-+..|+|-.|. .|-..|.|-+
T Consensus 120 ~~~--~Gt~~yH~h~~~~~~~~~~~Gl~G~liV~~ 152 (336)
T 1oe1_A 120 ADR--SGTFVYHCAPEGMVPWHVVSGMSGTLMVLP 152 (336)
T ss_dssp CCS--CEEEEEECCCTTCHHHHHHTTCEEEEEEEC
T ss_pred CCC--CeEEEEecCCCCchhHHHhCCCeEEEEEec
Confidence 864 999999998752 4545666654
No 46
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=44.05 E-value=45 Score=36.33 Aligned_cols=78 Identities=13% Similarity=0.129 Sum_probs=47.3
Q ss_pred EEEcCcc---CceeEEEeCceEEEEEEe-c-CCcceEEeec-----CCCCcccccc---ceeeEecCCcCCCCCCCCCeE
Q 048731 406 FYINKKE---APVLRVERGVPVKFSIQA-G-HDVALYITSD-----ILGGNASLRN---VTETIYAGGPEAEGVKASPME 472 (904)
Q Consensus 406 wyiN~~~---~p~~~~~rg~ty~f~v~~-g-~~~p~~it~~-----~~GG~~~~~~---~~~~~~ag~~~~~g~~~~~~~ 472 (904)
|.|||+. .|.|.+++|++|.+++.. | ..|||-|-.- ..|-+....+ .+.++.. .+++..+
T Consensus 198 ~~iNG~~~~~~~~l~v~~Ge~vri~l~N~g~~~HpfHlHGh~f~v~~~G~~~~p~~~~~~~Dtv~v-------~PG~~~~ 270 (343)
T 3cg8_A 198 MTINNRKPHTGPDFEATVGDRVEIVMITHGEYYHTFHMHGHRWADNRTGILTGPDDPSRVIDNKIT-------GPADSFG 270 (343)
T ss_dssp TEETTCCTTCCCCEEEETTCEEEEEEEEESSCCEEEEETTCCEESSSSSSCCSTTCCCCEESEEEE-------CTTCEEE
T ss_pred ceecccCCCCCccEEeCCCCEEEEEEEcCCccccccEecCcEEEEeccCcccCCCCcccceeeEEe-------CCCCEEE
Confidence 7899986 678999999999996654 3 2356554221 1121211100 1122221 1356778
Q ss_pred EEEecCC-CCCCceeeeee
Q 048731 473 LVWAPDR-NTPDEVYYQSL 490 (904)
Q Consensus 473 ~~~~~~~-~~pd~~yy~~~ 490 (904)
+.|+.+. +-|-.-.|+|-
T Consensus 271 v~~~~~~~~~pG~w~~HCH 289 (343)
T 3cg8_A 271 FQIIAGEGVGAGAWMYHCH 289 (343)
T ss_dssp EEEETTTTTCSEEEEEEEC
T ss_pred EEEEECCCCCCeeEEEeCC
Confidence 8888763 67888999996
No 47
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=42.75 E-value=40 Score=36.51 Aligned_cols=82 Identities=17% Similarity=0.220 Sum_probs=49.3
Q ss_pred ceeEEEcCc-cCceeEEEeCceEEEEEEecCCcceEEeecCCCCccccccceeeEecCCcCCC---CCCCCCeEEEEecC
Q 048731 403 VKVFYINKK-EAPVLRVERGVPVKFSIQAGHDVALYITSDILGGNASLRNVTETIYAGGPEAE---GVKASPMELVWAPD 478 (904)
Q Consensus 403 ~~~wyiN~~-~~p~~~~~rg~ty~f~v~~g~~~p~~it~~~~GG~~~~~~~~~~~~ag~~~~~---g~~~~~~~~~~~~~ 478 (904)
..+|-+||+ .-|.|.+++|.+|.+++...-..|.-| .-+|-...... -.=|+|..+ =.+|+..+..|+.+
T Consensus 23 ~~~~~~NG~~pGP~I~v~~Gd~v~v~v~N~l~~~~si--H~HG~~~~~~~----~~DGvp~vtq~~I~PG~~~~y~f~~~ 96 (339)
T 2zwn_A 23 YKVFGFNGQVPGPLIHVQEGDDVIVNVTNNTSLPHTI--HWHGVHQKGTW----RSDGVPGVTQQPIEAGDSYTYKFKAD 96 (339)
T ss_dssp EEEEEETTBSSCCEEEEETTCEEEEEEEEESSSCBCC--EEETCCCTTCG----GGSCCBTTTBCCBCTTCEEEEEEECC
T ss_pred EEEEEECCccCCCeEEEECCCEEEEEEEECCCCCccE--EeCCCCcCCCc----ccCCCCccccCccCCCCeEEEEEECC
Confidence 357999998 689999999999999887664433211 11221100000 001222111 12467778889875
Q ss_pred CCCCCceeeeeeec
Q 048731 479 RNTPDEVYYQSLYD 492 (904)
Q Consensus 479 ~~~pd~~yy~~~~~ 492 (904)
.|.+.+|+|-.+
T Consensus 97 --~~Gt~wyH~H~~ 108 (339)
T 2zwn_A 97 --RIGTLWYHCHVN 108 (339)
T ss_dssp --SCEEEEEECCSS
T ss_pred --CCEEEEEEecCC
Confidence 589999999653
No 48
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=42.26 E-value=47 Score=37.21 Aligned_cols=76 Identities=17% Similarity=0.241 Sum_probs=47.9
Q ss_pred ceeEEEcCcc-CceeEEEeCceEEEEEEecCC--cceEEeecCCCCccccccceeeEecCCcCCC-CCCCCCeEEEEecC
Q 048731 403 VKVFYINKKE-APVLRVERGVPVKFSIQAGHD--VALYITSDILGGNASLRNVTETIYAGGPEAE-GVKASPMELVWAPD 478 (904)
Q Consensus 403 ~~~wyiN~~~-~p~~~~~rg~ty~f~v~~g~~--~p~~it~~~~GG~~~~~~~~~~~~ag~~~~~-g~~~~~~~~~~~~~ 478 (904)
..+|-|||+. -|.|.+++|.+|.+++...-+ .++-|- .+|-.. --|+|... =.+|+..++.|+.+
T Consensus 183 ~~~~~~NG~~pgp~i~v~~G~~v~~rl~N~~~~~~~~~ih--~Hg~~~---------~DG~~~~~~i~pG~~~~~~~~~~ 251 (447)
T 2dv6_A 183 YTYWTFNGKVPGPFLRVRVGDTVELHLKNHKDSLMVHSVD--FHGATG---------PGGAAAFTQTDPGEETVVTFKAL 251 (447)
T ss_dssp EEEEEETTBBSCCCEEEETTCEEEEEEEECTTCSSCBCCE--ETTCCS---------GGGGGGGCCBCTTCEEEEEEECC
T ss_pred eEEEEECCccCCCeEEecCCCEEEEEEEeCCCCceeEEEe--eccccC---------CCCCCccEEeCCCCEEEEEEECC
Confidence 3579999985 799999999999997766522 222221 232110 11223211 13467778888865
Q ss_pred CCCCCceeeeeee
Q 048731 479 RNTPDEVYYQSLY 491 (904)
Q Consensus 479 ~~~pd~~yy~~~~ 491 (904)
.|.+.+|+|-.
T Consensus 252 --~~G~~~yh~h~ 262 (447)
T 2dv6_A 252 --IPGIYVYHCAT 262 (447)
T ss_dssp --SCEEEEEECCS
T ss_pred --CCeEEEEEeCC
Confidence 47899999964
No 49
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=41.51 E-value=63 Score=34.72 Aligned_cols=79 Identities=18% Similarity=0.249 Sum_probs=47.0
Q ss_pred ceeEEEcCccCce---eEEEeCceEEEEEEe-cCC-cceEE-------eecCCCCccccccceeeEecCCcCCCCCCCCC
Q 048731 403 VKVFYINKKEAPV---LRVERGVPVKFSIQA-GHD-VALYI-------TSDILGGNASLRNVTETIYAGGPEAEGVKASP 470 (904)
Q Consensus 403 ~~~wyiN~~~~p~---~~~~rg~ty~f~v~~-g~~-~p~~i-------t~~~~GG~~~~~~~~~~~~ag~~~~~g~~~~~ 470 (904)
.-.|-|||+.-|. +.|++|++|.|++-+ |.. |||-| ... .|+.-.....+.++..+ +|+-
T Consensus 164 ~d~~~ING~~~~~~~~l~v~~G~~vrlrliN~~~~~h~~hlhGh~f~vi~~-dG~~~~~p~~~dtv~l~-------pger 235 (318)
T 3g5w_A 164 FDYYTINAKSFPETQPIRVKKGDVIRLRLIGAGDHVHAIHTHGHISQIAFK-DGFPLDKPIKGDTVLIG-------PGER 235 (318)
T ss_dssp CCEEEETTBCBTSSCCEEECTTCEEEEEEEECSSSCEEEEETTSCEEEEEE-TTEEEEEEEEESEEEEC-------TTCE
T ss_pred CcEEEEcCcCCCCCccEEeCCCCEEEEEEEeCCCceEEEEECCcEEEEEec-CCcccCCCccccEEEEC-------CCCE
Confidence 4579999998776 999999999996544 422 45544 321 12211000112222222 3566
Q ss_pred eEEEEecCCCCCCceeeeeee
Q 048731 471 MELVWAPDRNTPDEVYYQSLY 491 (904)
Q Consensus 471 ~~~~~~~~~~~pd~~yy~~~~ 491 (904)
..+.++.+ -|-.-.++|-.
T Consensus 236 ~~v~~~a~--~pG~w~~hCH~ 254 (318)
T 3g5w_A 236 YDVILNMD--NPGLWMIHDHV 254 (318)
T ss_dssp EEEEEECC--SCSEEEEEESS
T ss_pred EEEEEECC--CCeeEEEEecc
Confidence 67777754 48888899974
No 50
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=38.04 E-value=34 Score=38.36 Aligned_cols=87 Identities=14% Similarity=0.164 Sum_probs=55.6
Q ss_pred ceeEEEcCcc-CceeEEEeCceEEEEEEecC----CcceEEeecCCCCccccccceeeEecCCcCCC-CCCCCCeEEEEe
Q 048731 403 VKVFYINKKE-APVLRVERGVPVKFSIQAGH----DVALYITSDILGGNASLRNVTETIYAGGPEAE-GVKASPMELVWA 476 (904)
Q Consensus 403 ~~~wyiN~~~-~p~~~~~rg~ty~f~v~~g~----~~p~~it~~~~GG~~~~~~~~~~~~ag~~~~~-g~~~~~~~~~~~ 476 (904)
..+|-|||.. -|.|.+++|.+..+++.... .|++-+ +|-.. .-|++... =.+|+..++.|+
T Consensus 48 ~~~~~~ng~~pgp~i~v~~Gd~v~v~~~N~l~~~~~~~iH~----HG~~~---------~dG~~~~~~i~pg~~~~y~f~ 114 (442)
T 2zoo_A 48 YVFWSFGETVPGSFIRVREGDEIEFNLSNHPSSKMPHNIDL----HAVTG---------PGGGAESSFTAPGHTSTFNFK 114 (442)
T ss_dssp EEEEEETTBSSCCBEEEETTCEEEEEEEECTTCSSCBCCEE----TTCCS---------GGGGGGGCCBCTTCEEEEEEE
T ss_pred EEEEEECCcCCCCcEEEeCCCEEEEEEEECCCCCCCCCEEe----cCCcC---------CCCCCccEEECCCCEEEEEEE
Confidence 4579999985 89999999999999887762 334332 33211 12333221 135677888998
Q ss_pred cCCCCCCceeeeee-----eccc--cceEEEeecC
Q 048731 477 PDRNTPDEVYYQSL-----YDQK--MGWRIQVVDG 504 (904)
Q Consensus 477 ~~~~~pd~~yy~~~-----~~~~--~g~~i~vv~~ 504 (904)
.+ -|-+..|+|- .|.. |-..|.|-+.
T Consensus 115 ~~--~~Gt~~yH~H~~~~~~~~~~Gl~G~~iv~~~ 147 (442)
T 2zoo_A 115 AL--NPGLYIYHCATAPVGMHIANGMYGLILVEPK 147 (442)
T ss_dssp CC--SCEEEEEECCCSSHHHHHHTTCEEEEEEECT
T ss_pred cC--CCeEEEEecCCCChHHHHhCccEEEEEEeCC
Confidence 75 3899999993 3443 4455555543
No 51
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=36.40 E-value=72 Score=34.52 Aligned_cols=78 Identities=19% Similarity=0.319 Sum_probs=44.4
Q ss_pred ceeEEEcCccCce---eEEEeCceEEEEEEecCC--c-------ceEEeecCCCCccccccceeeEecCCcCCCCCCCCC
Q 048731 403 VKVFYINKKEAPV---LRVERGVPVKFSIQAGHD--V-------ALYITSDILGGNASLRNVTETIYAGGPEAEGVKASP 470 (904)
Q Consensus 403 ~~~wyiN~~~~p~---~~~~rg~ty~f~v~~g~~--~-------p~~it~~~~GG~~~~~~~~~~~~ag~~~~~g~~~~~ 470 (904)
...|-|||+.-|. +.+++|++|.|++....+ | .|++... .|++-.......++..+ +|+.
T Consensus 165 ~~~~~ING~~~~~~~~~~v~~G~~vrlrliN~~~~~h~~hlhGh~f~vi~~-DG~~~~~p~~~dtv~l~-------pg~r 236 (339)
T 2zwn_A 165 ADYFSVNAKSFPLTQPLRVKKGDVVKIRFFGAGGGIHAMHSHGHDMLVTHK-DGLPLDSPYYADTVLVS-------PGER 236 (339)
T ss_dssp CCEEEETTBCTTSSCCEEECTTCEEEEEEEECSSSCEEEEETTCCEEEEEE-TTEEEEEEEEESEEEEC-------TTCE
T ss_pred cceEEEccccCCCcccEEECCCCEEEEEEEeCCCceEEEEECCcEEEEEEe-CCeecCCCcEEEEEEEC-------CCCE
Confidence 4578999987776 899999999997655423 3 4444432 23221101112222222 2455
Q ss_pred eEEEEecCCCCCCceeeeee
Q 048731 471 MELVWAPDRNTPDEVYYQSL 490 (904)
Q Consensus 471 ~~~~~~~~~~~pd~~yy~~~ 490 (904)
..+.++.+. |-.-.++|-
T Consensus 237 ~~v~~~~~~--pG~w~~hch 254 (339)
T 2zwn_A 237 YDVIIEADN--PGRFIFHDH 254 (339)
T ss_dssp EEEEEECCS--CSEEEEEEC
T ss_pred EEEEEEeCC--CeeEEEEEe
Confidence 667776643 666666774
No 52
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=35.50 E-value=1.2e+02 Score=31.74 Aligned_cols=92 Identities=12% Similarity=0.062 Sum_probs=52.9
Q ss_pred EEEcCcc---CceeEEEeCceEEEEEEec-C-CcceEEee-----cCCCCccccc---cceeeEecCCcCCCCCCCCCeE
Q 048731 406 FYINKKE---APVLRVERGVPVKFSIQAG-H-DVALYITS-----DILGGNASLR---NVTETIYAGGPEAEGVKASPME 472 (904)
Q Consensus 406 wyiN~~~---~p~~~~~rg~ty~f~v~~g-~-~~p~~it~-----~~~GG~~~~~---~~~~~~~ag~~~~~g~~~~~~~ 472 (904)
|-|||+. .|.|.+++|.++.+++.+. . .|||-|-. ...|.+.... ..+.++.. .+++...
T Consensus 157 ~~iNG~~~~~~p~i~v~~G~~vri~l~N~~~~~Hp~HlHG~~f~v~~~G~~~~p~~~~~~~Dtv~v-------~pg~~~~ 229 (276)
T 3kw8_A 157 MTINNRKPHTGPDFEATVGDRVEIVMITHGEYYHTFHMHGHRWADNRTGILTGPDDPSRVIDNKIT-------GPADSFG 229 (276)
T ss_dssp TEETTCCTTCCCCEEEETTCEEEEEEEEESSCCEEEEETTCCEESSSSSSCCSTTCCCCEESEEEE-------CTTCEEE
T ss_pred cccceecccCCCCEEEecCCEEEEEEecCCCcceeEEEccceeEEeccCccCCCcccccCCccEEe-------CCCceEE
Confidence 7899984 6899999999999966554 2 24443321 1122221110 01112211 1345667
Q ss_pred EEEecCC-CCCCceeeeee--ecc--ccceEEEeecC
Q 048731 473 LVWAPDR-NTPDEVYYQSL--YDQ--KMGWRIQVVDG 504 (904)
Q Consensus 473 ~~~~~~~-~~pd~~yy~~~--~~~--~~g~~i~vv~~ 504 (904)
+.|+.+. +-|-+-.|+|- .|. -|-..+.|.+.
T Consensus 230 ~~~~~~~~~npG~w~~HCH~~~H~~~GM~g~~~V~~~ 266 (276)
T 3kw8_A 230 FQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKP 266 (276)
T ss_dssp EEEETTTTTCSEEEEEEECSHHHHHTTCEEEEEEECT
T ss_pred EEEEeccCCCCCeEEEECCCchHhhCCCeEEEEEeCC
Confidence 7787765 46888999997 344 34555666654
No 53
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=34.04 E-value=1.7e+02 Score=31.36 Aligned_cols=99 Identities=17% Similarity=0.142 Sum_probs=56.6
Q ss_pred eeEEEcCcc-----CceeEEEeCceEEEEEEecC---------CcceEEeecCCCCcccccc-ceeeEecCCcCCCCCCC
Q 048731 404 KVFYINKKE-----APVLRVERGVPVKFSIQAGH---------DVALYITSDILGGNASLRN-VTETIYAGGPEAEGVKA 468 (904)
Q Consensus 404 ~~wyiN~~~-----~p~~~~~rg~ty~f~v~~g~---------~~p~~it~~~~GG~~~~~~-~~~~~~ag~~~~~g~~~ 468 (904)
-.+-|||+. .|.|.+++|++|.|+.-+.+ .|.|.+.. .|++-.... ..+++..+ +|
T Consensus 210 ~~~liNG~~~~~~~~~~l~v~~GervRlin~~~~~~~~~~~i~gh~~~Vi~--DG~~~~p~~~~~dtv~i~-------pG 280 (336)
T 1oe1_A 210 SHIVFNGKVGALTGANALTAKVGETVLLIHSQANRDTRPHLIGGHGDWVWE--TGKFANPPQRDLETWFIR-------GG 280 (336)
T ss_dssp SEEEETTSTTTTSGGGCEEEETTCEEEEEEEESSSCBCEEETTCCEEEEET--TCCTTSCCEEEESBCCBC-------TT
T ss_pred CEEEECCeeccCCCCcceEcCCCCEEEEEecCCCCccceEEECCcCceEeC--CCcCcCCccccceEEEEC-------CC
Confidence 478999997 58999999999998543331 13444442 344321111 11222221 23
Q ss_pred CCeEEEEecCCCCCCceeeeeee--cc-ccc--eEEEeecCCCCCcccCc
Q 048731 469 SPMELVWAPDRNTPDEVYYQSLY--DQ-KMG--WRIQVVDGGLSDMYNNS 513 (904)
Q Consensus 469 ~~~~~~~~~~~~~pd~~yy~~~~--~~-~~g--~~i~vv~~g~sd~y~~c 513 (904)
+-..+..+.+. |..-.|.|-. |. .+| ..++|.+....+-|..|
T Consensus 281 er~dvlv~~~~--pG~y~~~~h~~~~~~~~G~~~~~~V~~~~~~~~~~~~ 328 (336)
T 1oe1_A 281 SAGAALYTFKQ--PGVYAYLNHNLIEAFELGAAGHIKVEGKWNDDLMKQI 328 (336)
T ss_dssp EEEEEEEECCS--CEEEEEEESSHHHHHTTSCEEEEEEESCCCTTTCCCS
T ss_pred CcEEEEEEcCC--CceEEEEechhhccccCCCeEEEEECCCCChHHhccC
Confidence 44556666553 7788888875 32 334 56777665555555544
No 54
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=33.55 E-value=1.7e+02 Score=31.34 Aligned_cols=91 Identities=14% Similarity=0.076 Sum_probs=52.3
Q ss_pred ceeEEEcCcc-----CceeEEEeCceEEEEEEecC-C--------cceEEeecCCCCcccccc-ceeeEecCCcCCCCCC
Q 048731 403 VKVFYINKKE-----APVLRVERGVPVKFSIQAGH-D--------VALYITSDILGGNASLRN-VTETIYAGGPEAEGVK 467 (904)
Q Consensus 403 ~~~wyiN~~~-----~p~~~~~rg~ty~f~v~~g~-~--------~p~~it~~~~GG~~~~~~-~~~~~~ag~~~~~g~~ 467 (904)
+-.|-|||+. .|.|.+++|++|.|+.-+.+ + |.+.+-. .|++-.... ...++... +
T Consensus 209 ~~~~~ING~~~~~~~~~~l~v~~Ger~Rl~n~~~~~~~~~h~i~~h~~~Vi~--dG~~~~~p~~~~dtv~l~-------p 279 (333)
T 1mzy_A 209 PSHIVFNGAVGALTGEGALKAKVGDNVLFVHSQPNRDSRPHLIGGHGDLVWE--TGKFHNAPERDLETWFIR-------G 279 (333)
T ss_dssp CSEEEETTSTTTTSGGGCEEEETTCEEEEEEEESSSCBCEEEETCCEEEEET--TCCTTSCCEEEESBCCBC-------T
T ss_pred CcEEEECCcccccCCCcceEecCCCEEEEEECCCCCccccEEECCCCeEEEe--CCcccCCCccCcceEEEC-------C
Confidence 4579999997 57799999999999764432 2 3444433 255432111 11222221 2
Q ss_pred CCCeEEEEecCCCCCCceeeeeee--cc-ccc--eEEEeecC
Q 048731 468 ASPMELVWAPDRNTPDEVYYQSLY--DQ-KMG--WRIQVVDG 504 (904)
Q Consensus 468 ~~~~~~~~~~~~~~pd~~yy~~~~--~~-~~g--~~i~vv~~ 504 (904)
|+...+.++.+ -|..-.|+|-. |. ..| ..++|.+.
T Consensus 280 Ger~~v~v~a~--~pG~y~~~ch~~~h~~~~Gm~~~~~v~~~ 319 (333)
T 1mzy_A 280 GTAGAALYKFL--QPGVYAYVNHNLIEAVHKGATAHVLVEGE 319 (333)
T ss_dssp TEEEEEEEECC--SCEEEEEEESSHHHHHTTCCEEEEEEESC
T ss_pred CceEEEEEEcC--CCEEEEEecChhhhHhhCCCEEEEEEcCC
Confidence 34455556555 47888899964 53 445 44666543
No 55
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=32.50 E-value=80 Score=33.91 Aligned_cols=86 Identities=14% Similarity=0.158 Sum_probs=54.1
Q ss_pred ceeEEEcCcc-CceeEEEeCceEEEEEEec----CCcceEEeecCCCCccccccceeeEecCCcC-CCCCCCCCeEEEEe
Q 048731 403 VKVFYINKKE-APVLRVERGVPVKFSIQAG----HDVALYITSDILGGNASLRNVTETIYAGGPE-AEGVKASPMELVWA 476 (904)
Q Consensus 403 ~~~wyiN~~~-~p~~~~~rg~ty~f~v~~g----~~~p~~it~~~~GG~~~~~~~~~~~~ag~~~-~~g~~~~~~~~~~~ 476 (904)
..+|-|||+. -|.|.+++|.+..+++... +-|.+.+.... |.- |++. ..=.+|+..+..|+
T Consensus 52 ~~~~~~ng~~pgP~i~~~~Gd~v~v~~~N~~~~~h~Hg~~~~~~~-~~~------------~~~~~~~i~PG~~~~y~f~ 118 (333)
T 1mzy_A 52 LQAMTFDGSIPGPLMIVHEGDYVELTLINPPENTMPHNIDFHAAT-GAL------------GGGGLTLINPGEKVVLRFK 118 (333)
T ss_dssp EEEEEETTBSSCCEEEEETTCEEEEEEEECTTCCSCBCCEETTSC-SGG------------GGGGGCCBCTTEEEEEEEE
T ss_pred EEEEEECCccCCCcEEecCCCEEEEEEEECCCCcccccceecCCC-CCC------------CCCceeEeCCCCEEEEEEE
Confidence 4579999974 8999999999999987665 22444432210 100 1110 00124667788898
Q ss_pred cCCCCCCceeeeeeecc---------ccceEEEeec
Q 048731 477 PDRNTPDEVYYQSLYDQ---------KMGWRIQVVD 503 (904)
Q Consensus 477 ~~~~~pd~~yy~~~~~~---------~~g~~i~vv~ 503 (904)
.+ .|-+..|+|-.|. .|-..+.|-+
T Consensus 119 ~~--~~Gt~~yH~h~~~~~~~~~~~~Gl~G~~iV~~ 152 (333)
T 1mzy_A 119 AT--RAGAFVYHCAPGGPMIPWHVVSGMAGCIMVLP 152 (333)
T ss_dssp CC--SCEEEEEECCCSTTHHHHHHHTTCEEEEEEEC
T ss_pred CC--CCEEEEEeecCCcccchhhhhCCCEEEEEEcc
Confidence 75 4899999998752 3545566654
No 56
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=32.38 E-value=70 Score=34.35 Aligned_cols=81 Identities=16% Similarity=0.223 Sum_probs=49.6
Q ss_pred eeEEEcCc-cCceeEEEeCceEEEEEEecCCcceEEeecCCCCccccccceeeEecCCcCC--CC-CCCCCeEEEEecCC
Q 048731 404 KVFYINKK-EAPVLRVERGVPVKFSIQAGHDVALYITSDILGGNASLRNVTETIYAGGPEA--EG-VKASPMELVWAPDR 479 (904)
Q Consensus 404 ~~wyiN~~-~~p~~~~~rg~ty~f~v~~g~~~p~~it~~~~GG~~~~~~~~~~~~ag~~~~--~g-~~~~~~~~~~~~~~ 479 (904)
.+|-+||+ .-|.|.+++|.+...++..-.+.|.-| ..+|-..... --.-|+|.. .- .+|+..+..|+.+
T Consensus 23 ~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~~~~si--H~HG~~~~~~----~~~DG~p~~t~~~i~PG~~~~y~f~~~- 95 (318)
T 3g5w_A 23 HTFAFNGQVPAPLIHVMEGDDVTVNVTNMTTLPHTI--HWHGMLQRGT----WQSDGVPHATQHAIEPGDTFTYKFKAE- 95 (318)
T ss_dssp EEEEETTBSSCCEEEEETTCEEEEEEEECSSSCBCC--EEETCCCTTC----GGGSCCBTTTBCCBCTTCEEEEEEECC-
T ss_pred EEEEECCccCCceEEEeCCCEEEEEEEeCCCCceeE--EecCcCCCCC----cccCCCcccccccCCCCCEEEEEEEcC-
Confidence 47899996 589999999999999887664433211 1122211000 001122211 11 2567788999985
Q ss_pred CCCCceeeeeeec
Q 048731 480 NTPDEVYYQSLYD 492 (904)
Q Consensus 480 ~~pd~~yy~~~~~ 492 (904)
-|-+..|+|-.+
T Consensus 96 -~~Gt~wYH~H~~ 107 (318)
T 3g5w_A 96 -PAGTMWYHCHVN 107 (318)
T ss_dssp -SCEEEEEECCSS
T ss_pred -CCEEEEEEccCC
Confidence 588999999864
No 57
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=30.60 E-value=1.4e+02 Score=33.15 Aligned_cols=77 Identities=14% Similarity=0.205 Sum_probs=44.7
Q ss_pred eeEEEcCccC-----ceeEEEeCceEEEEEEe-cCC--cceEEeecC------CCCccccccceeeEecCCcCCCCCCCC
Q 048731 404 KVFYINKKEA-----PVLRVERGVPVKFSIQA-GHD--VALYITSDI------LGGNASLRNVTETIYAGGPEAEGVKAS 469 (904)
Q Consensus 404 ~~wyiN~~~~-----p~~~~~rg~ty~f~v~~-g~~--~p~~it~~~------~GG~~~~~~~~~~~~ag~~~~~g~~~~ 469 (904)
-.+-|||+.- |+|.+++|++|.|++-+ |.+ |+|.|-... .|++-. .....++.. .+|+
T Consensus 189 ~~~liNG~~~~~~~~~~l~v~~G~~vrlrliN~~~~~~~~~~i~g~~~~vi~~DG~~~~-p~~~~~~~l-------~pg~ 260 (442)
T 2zoo_A 189 DYVVFNGSVGSTTDENSLTAKVGETVRLYIGNGGPNLVSSFHVIGEIFDTVYVEGGSLK-NHNVQTTLI-------PAGG 260 (442)
T ss_dssp SEEEETTSTTTTSGGGCEEEETTCEEEEEEEEEESSCCEEEEEETCCBSEEEGGGSSCE-ECSBSEEEE-------CTTE
T ss_pred CEEEECCCcCCCCCCCceEeCCCCEEEEEEEeCCCCCceeeEEcCCEEEEEecCCccCC-CccceEEEE-------CCCe
Confidence 4677999975 68999999999996544 443 577764110 111100 000111111 1355
Q ss_pred CeEEEEecCCCCCCceeeeee
Q 048731 470 PMELVWAPDRNTPDEVYYQSL 490 (904)
Q Consensus 470 ~~~~~~~~~~~~pd~~yy~~~ 490 (904)
...+.++.+. |...+++|.
T Consensus 261 r~~v~v~~~~--~G~y~~~~~ 279 (442)
T 2zoo_A 261 AAIVEFKVEV--PGTFILVDH 279 (442)
T ss_dssp EEEEEEECCS--CEEEEEEES
T ss_pred eEEEEEEcCC--CCeEEEEec
Confidence 6677777764 788888884
No 58
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=24.02 E-value=2e+02 Score=30.71 Aligned_cols=77 Identities=12% Similarity=0.196 Sum_probs=45.5
Q ss_pred eeEEEcCccCc-----eeEEEeCceEEEE-EEecCC--cceEEeec------CCCCccccccceeeEecCCcCCCCCCCC
Q 048731 404 KVFYINKKEAP-----VLRVERGVPVKFS-IQAGHD--VALYITSD------ILGGNASLRNVTETIYAGGPEAEGVKAS 469 (904)
Q Consensus 404 ~~wyiN~~~~p-----~~~~~rg~ty~f~-v~~g~~--~p~~it~~------~~GG~~~~~~~~~~~~ag~~~~~g~~~~ 469 (904)
-.+-|||+.-| .|.+++|++|.|+ +++|.+ ++|.|-.- ..|++-. .....++..+ +|+
T Consensus 199 ~~~~iNG~~~~~~~~~~l~v~~G~~vRlRliN~~~~~~~~~~l~Gh~f~vi~~DG~~~~-p~~~d~l~l~-------pGe 270 (327)
T 1kbv_A 199 EYVVFNGHVGALTGDNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLI-NENVQSTIVP-------AGG 270 (327)
T ss_dssp SEEEETTSTTTTSGGGCEEEETTEEEEEEEEEEESSCCEEEEEETCCBSEEEGGGSSCE-ECSBSEEEEC-------TTE
T ss_pred ceEEEcCcccCCCCceeEEeCCCCEEEEEEECCCCCCceeEEEeCCEEEEEEcCCCcCC-CCceeEEEEC-------CCC
Confidence 47889999875 5999999999996 455543 46666320 1122211 0111222221 245
Q ss_pred CeEEEEecCCCCCCceeeeee
Q 048731 470 PMELVWAPDRNTPDEVYYQSL 490 (904)
Q Consensus 470 ~~~~~~~~~~~~pd~~yy~~~ 490 (904)
-..+.++.+. |...+++|-
T Consensus 271 r~dv~v~~~~--pG~y~l~~h 289 (327)
T 1kbv_A 271 SAIVEFKVDI--PGNYTLVDH 289 (327)
T ss_dssp EEEEEEEECS--CEEEEEEES
T ss_pred EEEEEEEeCC--CeEEEEEec
Confidence 5666776653 788888885
No 59
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous oxidase; 1.95A {Campylobacter jejuni subsp}
Probab=22.35 E-value=1.7e+02 Score=33.44 Aligned_cols=95 Identities=12% Similarity=0.096 Sum_probs=59.7
Q ss_pred ceeEEEcCc-cCceeEEEeCceEEEEEEecCCcceEEeecCCCCccccccceeeEecCCcCCCCCCCCCeEEEEecCCCC
Q 048731 403 VKVFYINKK-EAPVLRVERGVPVKFSIQAGHDVALYITSDILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNT 481 (904)
Q Consensus 403 ~~~wyiN~~-~~p~~~~~rg~ty~f~v~~g~~~p~~it~~~~GG~~~~~~~~~~~~ag~~~~~g~~~~~~~~~~~~~~~~ 481 (904)
-.+|-+||. .-|.|.+++|.+...++...-+.|--| --+|-... .. .-|+|...=.+|+.-+..|+++...
T Consensus 70 ~~~~~~NG~~PGPtIr~~~Gd~v~v~v~N~l~~~tsi--HwHGl~~~--~~----~DG~pq~~I~PG~s~~Y~f~~~~~~ 141 (481)
T 3zx1_A 70 TLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTI--HWHGVPVP--PD----QDGSPHDPILAGEERIYRFEIPQDS 141 (481)
T ss_dssp EEEEEETTBSSCCBEEEETTCEEEEEEEECSSSCBCC--EEETCCCC--GG----GSCCTTSCBCTTCEEEEEEECCTTC
T ss_pred EEEEEECCCCCCceEEEECCcEEEEEEEeCCCCCeeE--EecCcccC--Cc----cCCCccCcCCCCCeEEEEEeCCCCC
Confidence 458999996 789999999999999887764332111 11222210 00 1122221113567788999998776
Q ss_pred CCceeeeeeecc--------ccceEEEeecCC
Q 048731 482 PDEVYYQSLYDQ--------KMGWRIQVVDGG 505 (904)
Q Consensus 482 pd~~yy~~~~~~--------~~g~~i~vv~~g 505 (904)
+-|..|+|-.|. -|-+-|.|-|..
T Consensus 142 ~GT~WYH~H~~~~t~~q~~~GL~G~lIV~~~~ 173 (481)
T 3zx1_A 142 AGTYWYHPHPHYTASKQVFMGLAGAFVIKAKK 173 (481)
T ss_dssp CEEEEEECCCTTTHHHHHHTTCCEEEEEECSS
T ss_pred CceEEEeecCCCcchhhhhccceEEEEEcCcc
Confidence 779999998653 355666666643
No 60
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=21.73 E-value=43 Score=34.28 Aligned_cols=58 Identities=21% Similarity=0.334 Sum_probs=30.2
Q ss_pred cceeehhHHHHHHHHhhccceEEEEEeeccc-CCcc------c-EEeeehhhhhHHHHHHHHHHhhh
Q 048731 683 PVLAVHGFMMFLAWGILLPGGILAARYLKHV-KGDG------W-YQIHVYLQYSGLAIVLLALLFAV 741 (904)
Q Consensus 683 ~l~~~HG~LM~iAw~iL~P~Gil~aR~~k~~-~~~~------W-f~iH~~lq~~a~~l~iiG~vl~~ 741 (904)
....+| ++|++++.+++..|..+....... +.+. | ..+|..+-.+-++++++=++..+
T Consensus 17 ~~R~~H-W~~a~~ii~l~~tG~~~~~~~~~~~g~~~~~~~~~~~~~~H~~~G~~~~~l~~~Rl~w~~ 82 (235)
T 4gd3_A 17 PVRIWH-WLTVLCMAVLMVTGYFIGKPLPSVSGEATYLFYMGYIRLIHFSAGMVFTVVLLMRIYWAF 82 (235)
T ss_dssp CTTHHH-HHHHHHHHHHHHHHHHHHSCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhcCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355778 788888888777765432211100 1111 1 23687776655444444444443
No 61
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A 2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Probab=20.72 E-value=1.1e+02 Score=34.24 Aligned_cols=31 Identities=13% Similarity=0.275 Sum_probs=25.8
Q ss_pred ceeEEEcCccCceeEEEeCceEEE-EEEecCCc
Q 048731 403 VKVFYINKKEAPVLRVERGVPVKF-SIQAGHDV 434 (904)
Q Consensus 403 ~~~wyiN~~~~p~~~~~rg~ty~f-~v~~g~~~ 434 (904)
+..+-|||+..|.|.|++| +|.| .+++|++.
T Consensus 177 ~~~~~iNG~~~p~l~v~~g-~~RlRliN~~~~~ 208 (439)
T 2xu9_A 177 GDLVLVNGALRPTLVAQKA-TLRLRLLNASNAR 208 (439)
T ss_dssp CSEEEETTEESCEEECSSS-EEEEEEEECCSSC
T ss_pred CCEEEECCccCCcEEecCC-eEEEEEEecCCCc
Confidence 4578899999999999999 9999 56666553
Done!