BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048732
         (174 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
           Inhibiting Protein), A Leucine Rich Repeat Protein
           Involved In Plant Defense
          Length = 313

 Score = 38.5 bits (88), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 56/126 (44%), Gaps = 14/126 (11%)

Query: 25  EGCLEQERSALLQLKHFFNDSKHLHYWNDGENYSDCC--QWEGVECNNTTG--RVIKLDL 80
           E C  Q++ ALLQ+K    +   L  W      +DCC   W GV C+  T   RV  LDL
Sbjct: 1   ELCNPQDKQALLQIKKDLGNPTTLSSW---LPTTDCCNRTWLGVLCDTDTQTYRVNNLDL 57

Query: 81  AFRKRDSAEWYMNASLFTPFQQLEFLDLSG-NNITGCVQNEGLDRLSSLKNLKFLDLTLN 139
           +    +  + Y   S       L FL + G NN+ G +       ++ L  L +L +T  
Sbjct: 58  S--GLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP----PAIAKLTQLHYLYITHT 111

Query: 140 HFNNSI 145
           + + +I
Sbjct: 112 NVSGAI 117


>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
           Binding Of A Tri-Acylated Lipopeptide
          Length = 520

 Score = 30.4 bits (67), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 7/52 (13%)

Query: 91  YMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFN 142
           Y++ S+F   Q+LE+LDLS N +     +  +       NLK LDL+ N F+
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLVKISCHPTV-------NLKHLDLSFNAFD 103


>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
 pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
           Double-Stranded Rna
 pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
           Double-Stranded Rna
          Length = 697

 Score = 30.4 bits (67), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 80  LAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLN 139
           L  R+       ++ S F P + L  LDLS NNI     NE  D L  L+NL+ LD   N
Sbjct: 459 LMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANI--NE--DLLEGLENLEILDFQHN 514

Query: 140 HF 141
           + 
Sbjct: 515 NL 516


>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
           Ectodomain
 pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
           Brassinolide
          Length = 772

 Score = 27.3 bits (59), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 6/44 (13%)

Query: 102 QLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSI 145
           +L+ L +SGN I+G V       +S   NL+FLD++ N+F+  I
Sbjct: 176 ELKHLAISGNKISGDVD------VSRCVNLEFLDVSSNNFSTGI 213


>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
 pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
          Length = 768

 Score = 26.9 bits (58), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 6/44 (13%)

Query: 102 QLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSI 145
           +L+ L +SGN I+G V       +S   NL+FLD++ N+F+  I
Sbjct: 179 ELKHLAISGNKISGDVD------VSRCVNLEFLDVSSNNFSTGI 216


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,874,298
Number of Sequences: 62578
Number of extensions: 181363
Number of successful extensions: 436
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 423
Number of HSP's gapped (non-prelim): 24
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)