Query 048732
Match_columns 174
No_of_seqs 201 out of 2885
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 12:31:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048732.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048732hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 99.8 7.2E-19 1.6E-23 151.6 12.2 139 25-172 367-509 (623)
2 PLN00113 leucine-rich repeat r 99.8 1E-18 2.2E-23 157.1 13.0 133 28-171 27-182 (968)
3 PLN00113 leucine-rich repeat r 99.3 1.4E-12 2.9E-17 117.7 6.3 76 94-173 516-591 (968)
4 PF13855 LRR_8: Leucine rich r 99.2 3E-11 6.5E-16 73.5 3.7 61 101-165 1-61 (61)
5 KOG0617 Ras suppressor protein 99.1 5.9E-12 1.3E-16 91.4 -1.0 88 72-170 32-120 (264)
6 PF13855 LRR_8: Leucine rich r 99.0 4.8E-10 1E-14 68.1 3.9 60 74-141 2-61 (61)
7 PLN03150 hypothetical protein; 99.0 7.8E-10 1.7E-14 95.9 6.5 91 73-171 442-533 (623)
8 KOG4194 Membrane glycoprotein 98.7 5E-10 1.1E-14 94.2 -3.4 90 75-170 295-408 (873)
9 PF14580 LRR_9: Leucine-rich r 98.7 1.3E-08 2.9E-13 74.7 2.7 83 73-166 42-126 (175)
10 PF08263 LRRNT_2: Leucine rich 98.6 5.5E-08 1.2E-12 54.9 4.4 40 29-69 2-43 (43)
11 KOG4194 Membrane glycoprotein 98.6 5.4E-09 1.2E-13 88.1 -0.1 85 74-166 270-354 (873)
12 KOG4237 Extracellular matrix p 98.6 4.5E-09 9.7E-14 84.8 -0.6 87 72-166 66-153 (498)
13 PF14580 LRR_9: Leucine-rich r 98.6 3E-08 6.4E-13 72.8 3.1 81 73-166 19-101 (175)
14 KOG0617 Ras suppressor protein 98.6 1E-09 2.3E-14 79.8 -5.0 92 74-172 80-191 (264)
15 KOG0618 Serine/threonine phosp 98.5 9.2E-09 2E-13 90.2 -1.6 83 72-165 382-464 (1081)
16 PF12799 LRR_4: Leucine Rich r 98.5 1.3E-07 2.8E-12 53.6 3.6 37 129-166 1-37 (44)
17 PRK15387 E3 ubiquitin-protein 98.4 2.5E-07 5.5E-12 81.6 4.3 42 129-171 422-463 (788)
18 KOG0444 Cytoskeletal regulator 98.4 5.4E-08 1.2E-12 83.1 -0.4 82 74-165 104-185 (1255)
19 KOG0472 Leucine-rich repeat pr 98.4 9.3E-08 2E-12 77.6 0.6 41 125-166 501-541 (565)
20 PF12799 LRR_4: Leucine Rich r 98.3 6.1E-07 1.3E-11 50.8 3.4 37 101-142 1-37 (44)
21 KOG0472 Leucine-rich repeat pr 98.3 6.4E-08 1.4E-12 78.6 -1.7 45 125-171 248-292 (565)
22 KOG0444 Cytoskeletal regulator 98.3 1.3E-07 2.9E-12 80.7 -0.4 90 73-172 78-168 (1255)
23 cd00116 LRR_RI Leucine-rich re 98.3 5.3E-07 1.2E-11 71.3 2.9 94 73-166 137-234 (319)
24 KOG4579 Leucine-rich repeat (L 98.3 7.6E-08 1.7E-12 67.6 -1.9 87 73-170 53-139 (177)
25 KOG4237 Extracellular matrix p 98.2 5.3E-07 1.1E-11 73.1 1.4 86 73-166 274-359 (498)
26 cd00116 LRR_RI Leucine-rich re 98.2 6.2E-07 1.3E-11 71.0 1.7 93 74-166 109-206 (319)
27 PRK15370 E3 ubiquitin-protein 98.1 3.4E-05 7.4E-10 68.4 11.9 37 24-63 57-97 (754)
28 KOG1259 Nischarin, modulator o 98.1 4.9E-07 1.1E-11 71.3 0.1 58 74-142 285-342 (490)
29 PRK15370 E3 ubiquitin-protein 98.1 6.4E-06 1.4E-10 72.9 6.5 87 73-171 199-300 (754)
30 PLN03210 Resistant to P. syrin 98.1 1.1E-05 2.5E-10 74.7 8.0 89 73-171 611-699 (1153)
31 KOG0618 Serine/threonine phosp 98.1 9.3E-07 2E-11 78.0 0.3 86 74-171 46-131 (1081)
32 COG4886 Leucine-rich repeat (L 98.0 3.1E-06 6.8E-11 69.4 2.9 87 74-172 117-204 (394)
33 PLN03210 Resistant to P. syrin 97.9 3.2E-05 6.9E-10 71.8 7.7 88 73-170 634-721 (1153)
34 KOG0532 Leucine-rich repeat (L 97.9 7.3E-07 1.6E-11 75.2 -3.3 64 97-167 185-248 (722)
35 PRK15387 E3 ubiquitin-protein 97.9 2.9E-05 6.4E-10 68.9 6.0 33 74-114 223-255 (788)
36 KOG4658 Apoptotic ATPase [Sign 97.8 6.6E-06 1.4E-10 74.0 1.5 88 73-169 545-634 (889)
37 KOG1259 Nischarin, modulator o 97.8 6.3E-06 1.4E-10 65.1 0.6 62 98-166 281-342 (490)
38 KOG0532 Leucine-rich repeat (L 97.6 2.7E-06 6E-11 71.8 -3.9 78 74-163 122-199 (722)
39 KOG4579 Leucine-rich repeat (L 97.5 1.6E-05 3.5E-10 56.1 -1.0 86 73-167 27-114 (177)
40 COG4886 Leucine-rich repeat (L 97.5 3E-05 6.4E-10 63.6 0.3 80 74-164 141-220 (394)
41 KOG1859 Leucine-rich repeat pr 97.4 9.3E-06 2E-10 70.6 -3.2 80 74-166 188-267 (1096)
42 KOG0531 Protein phosphatase 1, 97.4 8.9E-05 1.9E-09 61.5 2.6 82 73-167 95-176 (414)
43 KOG1644 U2-associated snRNP A' 97.3 0.0004 8.7E-09 51.9 4.6 82 74-166 43-126 (233)
44 KOG4658 Apoptotic ATPase [Sign 97.2 0.00015 3.4E-09 65.3 2.2 84 72-164 570-653 (889)
45 PF00560 LRR_1: Leucine Rich R 97.1 0.00022 4.9E-09 34.0 0.8 21 130-151 1-21 (22)
46 KOG1644 U2-associated snRNP A' 97.1 0.00085 1.9E-08 50.2 4.2 79 76-166 22-101 (233)
47 KOG2739 Leucine-rich acidic nu 97.1 0.00035 7.6E-09 53.9 2.2 66 96-167 60-130 (260)
48 KOG2982 Uncharacterized conser 97.1 0.00012 2.7E-09 57.8 -0.3 87 73-165 71-158 (418)
49 KOG3207 Beta-tubulin folding c 97.0 0.00022 4.8E-09 58.8 0.5 67 97-166 242-314 (505)
50 KOG2739 Leucine-rich acidic nu 97.0 0.00041 8.8E-09 53.5 1.8 64 97-166 39-104 (260)
51 KOG1859 Leucine-rich repeat pr 96.9 5E-05 1.1E-09 66.2 -3.9 81 74-166 165-245 (1096)
52 KOG0531 Protein phosphatase 1, 96.9 0.0005 1.1E-08 57.1 1.9 80 75-166 74-153 (414)
53 KOG1909 Ran GTPase-activating 96.5 0.0014 3.1E-08 52.6 2.0 18 125-142 209-226 (382)
54 KOG0473 Leucine-rich repeat pr 96.5 3.8E-05 8.3E-10 58.7 -6.6 84 72-166 41-124 (326)
55 KOG1909 Ran GTPase-activating 96.3 0.0014 3.1E-08 52.6 0.9 93 74-166 186-283 (382)
56 KOG3665 ZYG-1-like serine/thre 96.3 0.0021 4.5E-08 56.8 1.8 92 73-167 148-264 (699)
57 KOG3207 Beta-tubulin folding c 96.1 0.00084 1.8E-08 55.4 -1.3 63 99-166 220-284 (505)
58 KOG2123 Uncharacterized conser 96.0 0.00027 5.8E-09 55.5 -4.5 79 72-159 40-123 (388)
59 COG5238 RNA1 Ran GTPase-activa 95.9 0.0071 1.5E-07 47.6 3.1 70 97-166 88-170 (388)
60 PF00560 LRR_1: Leucine Rich R 95.9 0.0036 7.9E-08 29.7 0.9 18 102-120 1-18 (22)
61 PF13504 LRR_7: Leucine rich r 95.8 0.0068 1.5E-07 26.9 1.5 11 131-141 3-13 (17)
62 KOG2123 Uncharacterized conser 95.1 0.00071 1.5E-08 53.1 -4.9 84 74-170 20-105 (388)
63 KOG3665 ZYG-1-like serine/thre 95.0 0.014 3.1E-07 51.6 2.3 76 72-147 172-268 (699)
64 smart00369 LRR_TYP Leucine-ric 94.6 0.026 5.7E-07 27.6 1.7 14 153-166 2-15 (26)
65 smart00370 LRR Leucine-rich re 94.6 0.026 5.7E-07 27.6 1.7 14 153-166 2-15 (26)
66 COG5238 RNA1 Ran GTPase-activa 94.5 0.039 8.4E-07 43.5 3.2 17 150-166 211-227 (388)
67 KOG2982 Uncharacterized conser 94.2 0.02 4.3E-07 45.7 1.1 66 99-166 69-134 (418)
68 PF13306 LRR_5: Leucine rich r 94.1 0.22 4.8E-06 33.7 6.0 35 125-161 77-111 (129)
69 smart00369 LRR_TYP Leucine-ric 94.0 0.051 1.1E-06 26.5 2.0 19 128-147 1-19 (26)
70 smart00370 LRR Leucine-rich re 94.0 0.051 1.1E-06 26.5 2.0 19 128-147 1-19 (26)
71 PRK15386 type III secretion pr 93.7 0.15 3.2E-06 42.6 5.3 31 130-163 157-187 (426)
72 PRK15386 type III secretion pr 92.2 0.4 8.6E-06 40.1 5.7 52 74-139 53-104 (426)
73 smart00364 LRR_BAC Leucine-ric 91.1 0.16 3.5E-06 25.1 1.4 18 129-147 2-19 (26)
74 PF13516 LRR_6: Leucine Rich r 90.9 0.14 3E-06 24.4 1.1 15 153-167 2-16 (24)
75 PF13306 LRR_5: Leucine rich r 89.6 1 2.2E-05 30.4 5.0 80 73-163 12-91 (129)
76 KOG2120 SCF ubiquitin ligase, 89.3 0.15 3.2E-06 40.8 0.7 82 73-162 286-372 (419)
77 smart00365 LRR_SD22 Leucine-ri 89.1 0.35 7.6E-06 23.9 1.7 15 152-166 1-15 (26)
78 smart00368 LRR_RI Leucine rich 86.7 0.55 1.2E-05 23.4 1.7 14 153-166 2-15 (28)
79 KOG0473 Leucine-rich repeat pr 86.7 0.0096 2.1E-07 45.8 -7.1 71 94-171 35-105 (326)
80 KOG2120 SCF ubiquitin ligase, 86.6 0.54 1.2E-05 37.8 2.3 16 97-112 334-349 (419)
81 KOG3864 Uncharacterized conser 78.6 0.25 5.4E-06 37.2 -2.2 82 74-162 102-185 (221)
82 KOG3763 mRNA export factor TAP 72.6 1.6 3.6E-05 37.5 0.9 12 128-139 243-254 (585)
83 KOG4308 LRR-containing protein 70.3 0.23 5E-06 42.2 -4.7 91 75-165 89-184 (478)
84 PF07172 GRP: Glycine rich pro 60.0 7.8 0.00017 25.5 2.0 21 1-21 1-21 (95)
85 KOG4308 LRR-containing protein 59.4 0.22 4.9E-06 42.3 -6.8 43 72-114 171-217 (478)
86 TIGR00864 PCC polycystin catio 56.3 8.4 0.00018 39.5 2.3 32 79-114 1-32 (2740)
87 TIGR00864 PCC polycystin catio 56.3 7.2 0.00016 39.9 1.9 31 107-141 1-31 (2740)
88 KOG3763 mRNA export factor TAP 55.5 5.2 0.00011 34.6 0.8 68 72-145 217-286 (585)
89 smart00367 LRR_CC Leucine-rich 40.2 22 0.00048 16.8 1.4 11 129-139 2-12 (26)
90 KOG1947 Leucine rich repeat pr 24.3 45 0.00098 27.5 1.5 63 98-164 240-306 (482)
91 smart00446 LRRcap occurring C- 20.1 33 0.00072 16.8 -0.1 13 125-137 9-21 (26)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=99.79 E-value=7.2e-19 Score=151.59 Aligned_cols=139 Identities=31% Similarity=0.430 Sum_probs=115.1
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCccccceEecCCC----CcEEEEEcCCCCCCCCccccCcccccCC
Q 048732 25 EGCLEQERSALLQLKHFFNDSKHLHYWNDGENYSDCCQWEGVECNNTT----GRVIKLDLAFRKRDSAEWYMNASLFTPF 100 (174)
Q Consensus 25 ~~~~~~~~~~L~~~~~~~~~~~~~~~W~~~~~~~~~C~w~gv~c~~~~----~~v~~L~L~~n~~~~g~~~~~~~~~~~l 100 (174)
..+...|..+|..+|+.+..+.. .+|.+..|....|.|.||.|.... ..|+.|+|++|++. |.+ +..+..+
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~-~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~-g~i---p~~i~~L 441 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLR-FGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLR-GFI---PNDISKL 441 (623)
T ss_pred cccCchHHHHHHHHHHhcCCccc-CCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCcc-ccC---CHHHhCC
Confidence 34566799999999999875432 479763221122379999995311 25999999999876 432 6678999
Q ss_pred CCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCCCC
Q 048732 101 QQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDIE 172 (174)
Q Consensus 101 ~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP~~ 172 (174)
++|+.|+|++|.+.|.+|.. ++.+++|+.|+|++|+++|.+|..++.+++|+.|+|++|+++|.+|.+
T Consensus 442 ~~L~~L~Ls~N~l~g~iP~~----~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~ 509 (623)
T PLN03150 442 RHLQSINLSGNSIRGNIPPS----LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA 509 (623)
T ss_pred CCCCEEECCCCcccCcCChH----HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChH
Confidence 99999999999999999988 999999999999999999999999999999999999999999999963
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.79 E-value=1e-18 Score=157.06 Aligned_cols=133 Identities=32% Similarity=0.568 Sum_probs=97.5
Q ss_pred CHHHHHHHHHHHhhCCCCCCC-CCCCCCCCCCCCccccceEecCCCCcEEEEEcCCCCCCCCccccCcccccCCCCCCEE
Q 048732 28 LEQERSALLQLKHFFNDSKHL-HYWNDGENYSDCCQWEGVECNNTTGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFL 106 (174)
Q Consensus 28 ~~~~~~~L~~~~~~~~~~~~~-~~W~~~~~~~~~C~w~gv~c~~~~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L 106 (174)
.+.|..+|++||+.+.++... .+|+.. .++|.|.||.|+. .++|+.|+|++|++. +. .+..|..+++|+.|
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~---~~~c~w~gv~c~~-~~~v~~L~L~~~~i~-~~---~~~~~~~l~~L~~L 98 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSS---ADVCLWQGITCNN-SSRVVSIDLSGKNIS-GK---ISSAIFRLPYIQTI 98 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCC---CCCCcCcceecCC-CCcEEEEEecCCCcc-cc---CChHHhCCCCCCEE
Confidence 458999999999999877554 899764 6899999999986 579999999998776 22 24556777777777
Q ss_pred eCcCCccccccCcchhhhcCC----------------------CCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCc
Q 048732 107 DLSGNNITGCVQNEGLDRLSS----------------------LKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNE 164 (174)
Q Consensus 107 ~ls~N~l~g~~p~~~~~~~~~----------------------l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~ 164 (174)
++++|.+.+.+|... +.. +++|++|++++|.+++.+|..++.+++|++|++++|.
T Consensus 99 ~Ls~n~~~~~ip~~~---~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~ 175 (968)
T PLN00113 99 NLSNNQLSGPIPDDI---FTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV 175 (968)
T ss_pred ECCCCccCCcCChHH---hccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCc
Confidence 777777777776542 223 4555555555555666666667777777777777777
Q ss_pred ccccCCC
Q 048732 165 LNGSIDI 171 (174)
Q Consensus 165 l~g~iP~ 171 (174)
+++.+|.
T Consensus 176 l~~~~p~ 182 (968)
T PLN00113 176 LVGKIPN 182 (968)
T ss_pred ccccCCh
Confidence 7776664
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.34 E-value=1.4e-12 Score=117.70 Aligned_cols=76 Identities=30% Similarity=0.484 Sum_probs=59.6
Q ss_pred cccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCCCCC
Q 048732 94 ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDIEG 173 (174)
Q Consensus 94 ~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP~~~ 173 (174)
|..+..+++|+.|++++|.+++.+|.. +..+++|+.||+++|+++|.+|..+..+++|+.|++++|+++|.+|..|
T Consensus 516 p~~~~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~ 591 (968)
T PLN00113 516 PDELSSCKKLVSLDLSHNQLSGQIPAS----FSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTG 591 (968)
T ss_pred ChHHcCccCCCEEECCCCcccccCChh----HhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcc
Confidence 445667777777777777777777776 7778888888888888888888888888888888888888888888765
No 4
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.16 E-value=3e-11 Score=73.47 Aligned_cols=61 Identities=36% Similarity=0.501 Sum_probs=49.8
Q ss_pred CCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcc
Q 048732 101 QQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNEL 165 (174)
Q Consensus 101 ~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l 165 (174)
++|++|++++|+++ .+|... |..+++|++|++++|.++...|..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~-~i~~~~---f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-EIPPDS---FSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTES-EECTTT---TTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCC-ccCHHH---HcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46888899999888 455433 88899999999999999866667888999999999998875
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.12 E-value=5.9e-12 Score=91.43 Aligned_cols=88 Identities=28% Similarity=0.459 Sum_probs=77.6
Q ss_pred CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCC
Q 048732 72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGG 151 (174)
Q Consensus 72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~ 151 (174)
..++++|.|++|++. .++| .+..+.+|+.|++++|++. .+|.. ++.+++|+.|+++.|++. .+|..|+.
T Consensus 32 ~s~ITrLtLSHNKl~----~vpp-nia~l~nlevln~~nnqie-~lp~~----issl~klr~lnvgmnrl~-~lprgfgs 100 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT----VVPP-NIAELKNLEVLNLSNNQIE-ELPTS----ISSLPKLRILNVGMNRLN-ILPRGFGS 100 (264)
T ss_pred hhhhhhhhcccCcee----ecCC-cHHHhhhhhhhhcccchhh-hcChh----hhhchhhhheecchhhhh-cCccccCC
Confidence 468999999999987 4444 5899999999999999998 78888 999999999999999998 89999999
Q ss_pred CCCCCEEEccCCccc-ccCC
Q 048732 152 LSSLKHLSLGTNELN-GSID 170 (174)
Q Consensus 152 l~~L~~L~Ls~N~l~-g~iP 170 (174)
++.|++|||+.|++. ..+|
T Consensus 101 ~p~levldltynnl~e~~lp 120 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLP 120 (264)
T ss_pred CchhhhhhccccccccccCC
Confidence 999999999999886 3444
No 6
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.99 E-value=4.8e-10 Score=68.12 Aligned_cols=60 Identities=37% Similarity=0.526 Sum_probs=53.8
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCC
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHF 141 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l 141 (174)
+++.|++++|++. .+++..|..+++|++|++++|.++...|.. |.++++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~----~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~----f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLT----EIPPDSFSNLPNLETLDLSNNNLTSIPPDA----FSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTES----EECTTTTTTGTTESEEEETSSSESEEETTT----TTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCC----ccCHHHHcCCCCCCEeEccCCccCccCHHH----HcCCCCCCEEeCcCCcC
Confidence 6889999999888 788889999999999999999998555555 99999999999999985
No 7
>PLN03150 hypothetical protein; Provisional
Probab=98.99 E-value=7.8e-10 Score=95.87 Aligned_cols=91 Identities=22% Similarity=0.282 Sum_probs=78.7
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
.+++.|+|++|++. |. .|..+..+++|+.|++++|.++|.+|.. ++++++|+.|+|++|.++|.+|..++.+
T Consensus 442 ~~L~~L~Ls~N~l~-g~---iP~~~~~l~~L~~LdLs~N~lsg~iP~~----l~~L~~L~~L~Ls~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 442 RHLQSINLSGNSIR-GN---IPPSLGSITSLEVLDLSYNSFNGSIPES----LGQLTSLRILNLNGNSLSGRVPAALGGR 513 (623)
T ss_pred CCCCEEECCCCccc-Cc---CChHHhCCCCCCEEECCCCCCCCCCchH----HhcCCCCCEEECcCCcccccCChHHhhc
Confidence 57899999999886 33 2667899999999999999999999998 9999999999999999999999988764
Q ss_pred -CCCCEEEccCCcccccCCC
Q 048732 153 -SSLKHLSLGTNELNGSIDI 171 (174)
Q Consensus 153 -~~L~~L~Ls~N~l~g~iP~ 171 (174)
.++..+++.+|.....+|.
T Consensus 514 ~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 514 LLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred cccCceEEecCCccccCCCC
Confidence 4678999999976544553
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.73 E-value=5e-10 Score=94.19 Aligned_cols=90 Identities=32% Similarity=0.438 Sum_probs=50.3
Q ss_pred EEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchh---------------------hhcCCCCCCCE
Q 048732 75 VIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGL---------------------DRLSSLKNLKF 133 (174)
Q Consensus 75 v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~---------------------~~~~~l~~L~~ 133 (174)
+..|+|++|.|. ++.++.+...++|++|+|++|+++ .+++..+ ..|..+++|+.
T Consensus 295 L~~L~lS~NaI~----rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~ 369 (873)
T KOG4194|consen 295 LEQLDLSYNAIQ----RIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHK 369 (873)
T ss_pred hhhhccchhhhh----eeecchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhh
Confidence 344455555544 444555555566666666666665 3333220 11455666666
Q ss_pred EeccCCCCCCcccc---ccCCCCCCCEEEccCCcccccCC
Q 048732 134 LDLTLNHFNNSIFS---SLGGLSSLKHLSLGTNELNGSID 170 (174)
Q Consensus 134 L~ls~N~l~g~~p~---~l~~l~~L~~L~Ls~N~l~g~iP 170 (174)
|||++|.+++.|.+ .|.+|++|+.|++.+|++. .||
T Consensus 370 LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~ 408 (873)
T KOG4194|consen 370 LDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIP 408 (873)
T ss_pred hcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecc
Confidence 66666666666554 3556666777777777665 344
No 9
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.66 E-value=1.3e-08 Score=74.65 Aligned_cols=83 Identities=29% Similarity=0.369 Sum_probs=35.2
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhc-CCCCCCCEEeccCCCCCCcc-ccccC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRL-SSLKNLKFLDLTLNHFNNSI-FSSLG 150 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~-~~l~~L~~L~ls~N~l~g~~-p~~l~ 150 (174)
.+++.|+|++|++. .+ +.+..++.|+.|++++|+++. +++. + ..+++|+.|++++|++...- -..+.
T Consensus 42 ~~L~~L~Ls~N~I~----~l--~~l~~L~~L~~L~L~~N~I~~-i~~~----l~~~lp~L~~L~L~~N~I~~l~~l~~L~ 110 (175)
T PF14580_consen 42 DKLEVLDLSNNQIT----KL--EGLPGLPRLKTLDLSNNRISS-ISEG----LDKNLPNLQELYLSNNKISDLNELEPLS 110 (175)
T ss_dssp TT--EEE-TTS--S--------TT----TT--EEE--SS---S--CHH----HHHH-TT--EEE-TTS---SCCCCGGGG
T ss_pred cCCCEEECCCCCCc----cc--cCccChhhhhhcccCCCCCCc-cccc----hHHhCCcCCEEECcCCcCCChHHhHHHH
Confidence 36788888888776 33 236678888888888888873 4332 3 35788888888888886321 13466
Q ss_pred CCCCCCEEEccCCccc
Q 048732 151 GLSSLKHLSLGTNELN 166 (174)
Q Consensus 151 ~l~~L~~L~Ls~N~l~ 166 (174)
.+++|++|+|.+|.++
T Consensus 111 ~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 111 SLPKLRVLSLEGNPVC 126 (175)
T ss_dssp G-TT--EEE-TT-GGG
T ss_pred cCCCcceeeccCCccc
Confidence 7888888888888876
No 10
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.65 E-value=5.5e-08 Score=54.85 Aligned_cols=40 Identities=43% Similarity=0.852 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhCC-CCCCC-CCCCCCCCCCCCccccceEec
Q 048732 29 EQERSALLQLKHFFN-DSKHL-HYWNDGENYSDCCQWEGVECN 69 (174)
Q Consensus 29 ~~~~~~L~~~~~~~~-~~~~~-~~W~~~~~~~~~C~w~gv~c~ 69 (174)
++|.++|++||+.+. ++... .+|+... ..++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~-~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSS-DSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT---S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcC-CCCCeeeccEEeC
Confidence 579999999999999 45444 9999841 2689999999995
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.63 E-value=5.4e-09 Score=88.07 Aligned_cols=85 Identities=29% Similarity=0.303 Sum_probs=61.6
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~ 153 (174)
.+.+|+|..|++. .+....+.+|+.|+.|++|+|.|...-+.. |...++|++|||++|+++.-.+..|..|.
T Consensus 270 kme~l~L~~N~l~----~vn~g~lfgLt~L~~L~lS~NaI~rih~d~----WsftqkL~~LdLs~N~i~~l~~~sf~~L~ 341 (873)
T KOG4194|consen 270 KMEHLNLETNRLQ----AVNEGWLFGLTSLEQLDLSYNAIQRIHIDS----WSFTQKLKELDLSSNRITRLDEGSFRVLS 341 (873)
T ss_pred ccceeecccchhh----hhhcccccccchhhhhccchhhhheeecch----hhhcccceeEeccccccccCChhHHHHHH
Confidence 5778888888877 555666778888999999999888666666 88888888888888888854455555555
Q ss_pred CCCEEEccCCccc
Q 048732 154 SLKHLSLGTNELN 166 (174)
Q Consensus 154 ~L~~L~Ls~N~l~ 166 (174)
.|+.|+|++|.++
T Consensus 342 ~Le~LnLs~Nsi~ 354 (873)
T KOG4194|consen 342 QLEELNLSHNSID 354 (873)
T ss_pred HhhhhcccccchH
Confidence 5555555555443
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.63 E-value=4.5e-09 Score=84.80 Aligned_cols=87 Identities=29% Similarity=0.368 Sum_probs=68.0
Q ss_pred CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccC-CCCCCccccccC
Q 048732 72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTL-NHFNNSIFSSLG 150 (174)
Q Consensus 72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~-N~l~g~~p~~l~ 150 (174)
+...++|+|..|+|. .+++..|..+++|+.|||++|.|+-.-|.. |.++++|..|-+.+ |+|+...-..|+
T Consensus 66 P~~tveirLdqN~I~----~iP~~aF~~l~~LRrLdLS~N~Is~I~p~A----F~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 66 PPETVEIRLDQNQIS----SIPPGAFKTLHRLRRLDLSKNNISFIAPDA----FKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred CCcceEEEeccCCcc----cCChhhccchhhhceecccccchhhcChHh----hhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 457899999999998 789999999999999999999999666666 88888877775544 888843334677
Q ss_pred CCCCCCEEEccCCccc
Q 048732 151 GLSSLKHLSLGTNELN 166 (174)
Q Consensus 151 ~l~~L~~L~Ls~N~l~ 166 (174)
+|.+|+.|.+.-|++.
T Consensus 138 gL~slqrLllNan~i~ 153 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHIN 153 (498)
T ss_pred hHHHHHHHhcChhhhc
Confidence 7766666666655554
No 13
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.60 E-value=3e-08 Score=72.81 Aligned_cols=81 Identities=33% Similarity=0.445 Sum_probs=28.2
Q ss_pred CcEEEEEcCCCCCCCCccccCccccc-CCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCcccccc-C
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFT-PFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSL-G 150 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~-~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l-~ 150 (174)
.++++|+|++|++. .+ +.++ .+.+|+.|++++|.++ .++. +..+++|++|++++|+++ .+...+ .
T Consensus 19 ~~~~~L~L~~n~I~----~I--e~L~~~l~~L~~L~Ls~N~I~-~l~~-----l~~L~~L~~L~L~~N~I~-~i~~~l~~ 85 (175)
T PF14580_consen 19 VKLRELNLRGNQIS----TI--ENLGATLDKLEVLDLSNNQIT-KLEG-----LPGLPRLKTLDLSNNRIS-SISEGLDK 85 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---TT---------TT--EEE--SS----S-CHHHHH
T ss_pred cccccccccccccc----cc--cchhhhhcCCCEEECCCCCCc-cccC-----ccChhhhhhcccCCCCCC-ccccchHH
Confidence 46789999999886 33 2244 5889999999999998 4543 778999999999999999 454444 4
Q ss_pred CCCCCCEEEccCCccc
Q 048732 151 GLSSLKHLSLGTNELN 166 (174)
Q Consensus 151 ~l~~L~~L~Ls~N~l~ 166 (174)
.+++|+.|++++|+|.
T Consensus 86 ~lp~L~~L~L~~N~I~ 101 (175)
T PF14580_consen 86 NLPNLQELYLSNNKIS 101 (175)
T ss_dssp H-TT--EEE-TTS---
T ss_pred hCCcCCEEECcCCcCC
Confidence 6899999999999986
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.58 E-value=1e-09 Score=79.81 Aligned_cols=92 Identities=26% Similarity=0.387 Sum_probs=57.5
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCcccc-ccCcch-------------------hhhcCCCCCCCE
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITG-CVQNEG-------------------LDRLSSLKNLKF 133 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g-~~p~~~-------------------~~~~~~l~~L~~ 133 (174)
.++.|++.-|++. +.|..|+.++.|+.||+.+|++.. .+|..- ...++++++|+.
T Consensus 80 klr~lnvgmnrl~-----~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqi 154 (264)
T KOG0617|consen 80 KLRILNVGMNRLN-----ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQI 154 (264)
T ss_pred hhhheecchhhhh-----cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeE
Confidence 3455555555443 335556666666666666666542 233220 011667777888
Q ss_pred EeccCCCCCCccccccCCCCCCCEEEccCCcccccCCCC
Q 048732 134 LDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDIE 172 (174)
Q Consensus 134 L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP~~ 172 (174)
|.+..|.+- ++|..++.++.|+.|++.+|+++ .+|+|
T Consensus 155 l~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppe 191 (264)
T KOG0617|consen 155 LSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPE 191 (264)
T ss_pred EeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChh
Confidence 877777776 67777888888888888888877 46654
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.52 E-value=9.2e-09 Score=90.22 Aligned_cols=83 Identities=30% Similarity=0.403 Sum_probs=54.5
Q ss_pred CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCC
Q 048732 72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGG 151 (174)
Q Consensus 72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~ 151 (174)
..+++.|+|++|++. .++...+.+++.|++|++|+|.++ .+|.. +..++.|++|....|++. .+| .+..
T Consensus 382 ~~hLKVLhLsyNrL~----~fpas~~~kle~LeeL~LSGNkL~-~Lp~t----va~~~~L~tL~ahsN~l~-~fP-e~~~ 450 (1081)
T KOG0618|consen 382 FKHLKVLHLSYNRLN----SFPASKLRKLEELEELNLSGNKLT-TLPDT----VANLGRLHTLRAHSNQLL-SFP-ELAQ 450 (1081)
T ss_pred ccceeeeeecccccc----cCCHHHHhchHHhHHHhcccchhh-hhhHH----HHhhhhhHHHhhcCCcee-ech-hhhh
Confidence 368999999999887 677888899999999999999998 67755 334444444444444443 333 3344
Q ss_pred CCCCCEEEccCCcc
Q 048732 152 LSSLKHLSLGTNEL 165 (174)
Q Consensus 152 l~~L~~L~Ls~N~l 165 (174)
++.|+++|++.|++
T Consensus 451 l~qL~~lDlS~N~L 464 (1081)
T KOG0618|consen 451 LPQLKVLDLSCNNL 464 (1081)
T ss_pred cCcceEEecccchh
Confidence 44444444444443
No 16
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.52 E-value=1.3e-07 Score=53.58 Aligned_cols=37 Identities=35% Similarity=0.522 Sum_probs=22.5
Q ss_pred CCCCEEeccCCCCCCccccccCCCCCCCEEEccCCccc
Q 048732 129 KNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELN 166 (174)
Q Consensus 129 ~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~ 166 (174)
++|++|++++|+++ .+|..++.|++|+.|++++|+|+
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35666666666666 45555666666666666666665
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.41 E-value=2.5e-07 Score=81.64 Aligned_cols=42 Identities=26% Similarity=0.157 Sum_probs=35.2
Q ss_pred CCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCCC
Q 048732 129 KNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDI 171 (174)
Q Consensus 129 ~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP~ 171 (174)
.+|+.|++++|+++ .+|..+..+++|+.|+|++|+|+|.+|.
T Consensus 422 ~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 422 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 35677888888887 7888899999999999999999987654
No 18
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.38 E-value=5.4e-08 Score=83.06 Aligned_cols=82 Identities=29% Similarity=0.349 Sum_probs=41.5
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~ 153 (174)
.++.||||+|++. .. |..+..-+++-.|+||+|+|. .||... |.++..|-.||||+|++. .+|+++..+.
T Consensus 104 dLt~lDLShNqL~----Ev-P~~LE~AKn~iVLNLS~N~Ie-tIPn~l---finLtDLLfLDLS~NrLe-~LPPQ~RRL~ 173 (1255)
T KOG0444|consen 104 DLTILDLSHNQLR----EV-PTNLEYAKNSIVLNLSYNNIE-TIPNSL---FINLTDLLFLDLSNNRLE-MLPPQIRRLS 173 (1255)
T ss_pred cceeeecchhhhh----hc-chhhhhhcCcEEEEcccCccc-cCCchH---HHhhHhHhhhccccchhh-hcCHHHHHHh
Confidence 4555566655554 12 222344444555555555554 344432 445555555555555554 4555555555
Q ss_pred CCCEEEccCCcc
Q 048732 154 SLKHLSLGTNEL 165 (174)
Q Consensus 154 ~L~~L~Ls~N~l 165 (174)
.|+.|+|++|.+
T Consensus 174 ~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 174 MLQTLKLSNNPL 185 (1255)
T ss_pred hhhhhhcCCChh
Confidence 555555555543
No 19
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.37 E-value=9.3e-08 Score=77.64 Aligned_cols=41 Identities=37% Similarity=0.598 Sum_probs=39.7
Q ss_pred cCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCccc
Q 048732 125 LSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELN 166 (174)
Q Consensus 125 ~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~ 166 (174)
+.+|.+|.+|||.+|.+. ++|+.++++++|++|++++|.|.
T Consensus 501 l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 789999999999999998 89999999999999999999998
No 20
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.34 E-value=6.1e-07 Score=50.80 Aligned_cols=37 Identities=49% Similarity=0.576 Sum_probs=30.7
Q ss_pred CCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCC
Q 048732 101 QQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFN 142 (174)
Q Consensus 101 ~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~ 142 (174)
++|++|++++|+++ .+|+. ++++++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~----l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPE----LSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGH----GTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCch----HhCCCCCCEEEecCCCCC
Confidence 46899999999998 57776 889999999999999998
No 21
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.30 E-value=6.4e-08 Score=78.55 Aligned_cols=45 Identities=29% Similarity=0.424 Sum_probs=37.5
Q ss_pred cCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCCC
Q 048732 125 LSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDI 171 (174)
Q Consensus 125 ~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP~ 171 (174)
..+++++.+||+..|+++ ..|+.+.-+++|..||+++|.|++ +|.
T Consensus 248 ~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-Lp~ 292 (565)
T KOG0472|consen 248 LKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-LPY 292 (565)
T ss_pred hcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc-CCc
Confidence 457888888999999988 888888888889999999998886 443
No 22
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.28 E-value=1.3e-07 Score=80.73 Aligned_cols=90 Identities=24% Similarity=0.294 Sum_probs=65.0
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccc-cCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSS-LGG 151 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~-l~~ 151 (174)
++++.+++..|++.... + |..+..|..|+.||||.|++. +.|.. +..-+++-+|+||+|++. .||.. |-+
T Consensus 78 p~LRsv~~R~N~LKnsG--i-P~diF~l~dLt~lDLShNqL~-EvP~~----LE~AKn~iVLNLS~N~Ie-tIPn~lfin 148 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSG--I-PTDIFRLKDLTILDLSHNQLR-EVPTN----LEYAKNSIVLNLSYNNIE-TIPNSLFIN 148 (1255)
T ss_pred hhhHHHhhhccccccCC--C-Cchhcccccceeeecchhhhh-hcchh----hhhhcCcEEEEcccCccc-cCCchHHHh
Confidence 35666677777666433 2 444667888888888888887 67776 777788888888888887 66654 457
Q ss_pred CCCCCEEEccCCcccccCCCC
Q 048732 152 LSSLKHLSLGTNELNGSIDIE 172 (174)
Q Consensus 152 l~~L~~L~Ls~N~l~g~iP~~ 172 (174)
++-|-.||||+|++. .+|++
T Consensus 149 LtDLLfLDLS~NrLe-~LPPQ 168 (1255)
T KOG0444|consen 149 LTDLLFLDLSNNRLE-MLPPQ 168 (1255)
T ss_pred hHhHhhhccccchhh-hcCHH
Confidence 788888888888887 56653
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.27 E-value=5.3e-07 Score=71.33 Aligned_cols=94 Identities=28% Similarity=0.298 Sum_probs=44.8
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCc----cccc
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNS----IFSS 148 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~----~p~~ 148 (174)
..++.|++++|++...........+..+++|+.|++++|.+++.........+..+++|+.|++++|.+++. ++..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 355666666665542111001122344455666666666655321110011134445666666666666533 2233
Q ss_pred cCCCCCCCEEEccCCccc
Q 048732 149 LGGLSSLKHLSLGTNELN 166 (174)
Q Consensus 149 l~~l~~L~~L~Ls~N~l~ 166 (174)
+..+++|++|++++|+++
T Consensus 217 ~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 217 LASLKSLEVLNLGDNNLT 234 (319)
T ss_pred hcccCCCCEEecCCCcCc
Confidence 445566666666666655
No 24
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.25 E-value=7.6e-08 Score=67.62 Aligned_cols=87 Identities=24% Similarity=0.277 Sum_probs=73.5
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
-+++.++|++|.+. .+++..-..++.++.|++++|.++ .+|.+ +..++.|+.|+++.|.+. ..|.-+..|
T Consensus 53 ~el~~i~ls~N~fk----~fp~kft~kf~t~t~lNl~~neis-dvPeE----~Aam~aLr~lNl~~N~l~-~~p~vi~~L 122 (177)
T KOG4579|consen 53 YELTKISLSDNGFK----KFPKKFTIKFPTATTLNLANNEIS-DVPEE----LAAMPALRSLNLRFNPLN-AEPRVIAPL 122 (177)
T ss_pred ceEEEEecccchhh----hCCHHHhhccchhhhhhcchhhhh-hchHH----HhhhHHhhhcccccCccc-cchHHHHHH
Confidence 47899999999887 566665566778999999999998 79988 999999999999999998 677777779
Q ss_pred CCCCEEEccCCcccccCC
Q 048732 153 SSLKHLSLGTNELNGSID 170 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~g~iP 170 (174)
.+|..|+..+|.+. .||
T Consensus 123 ~~l~~Lds~~na~~-eid 139 (177)
T KOG4579|consen 123 IKLDMLDSPENARA-EID 139 (177)
T ss_pred HhHHHhcCCCCccc-cCc
Confidence 99999999888765 454
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.19 E-value=5.3e-07 Score=73.07 Aligned_cols=86 Identities=27% Similarity=0.271 Sum_probs=64.5
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
.+++.|+|++|++. .+.+..|..+..+++|.|..|++. .+.... |.++..|++|+|++|+++-.-|.+|..+
T Consensus 274 ~~L~~lnlsnN~i~----~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~---f~~ls~L~tL~L~~N~it~~~~~aF~~~ 345 (498)
T KOG4237|consen 274 PNLRKLNLSNNKIT----RIEDGAFEGAAELQELYLTRNKLE-FVSSGM---FQGLSGLKTLSLYDNQITTVAPGAFQTL 345 (498)
T ss_pred ccceEeccCCCccc----hhhhhhhcchhhhhhhhcCcchHH-HHHHHh---hhccccceeeeecCCeeEEEeccccccc
Confidence 46777888888776 556677777788888888888776 333333 7788888888888888887777788888
Q ss_pred CCCCEEEccCCccc
Q 048732 153 SSLKHLSLGTNELN 166 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~ 166 (174)
.+|..|+|-.|.+.
T Consensus 346 ~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 346 FSLSTLNLLSNPFN 359 (498)
T ss_pred ceeeeeehccCccc
Confidence 88888888777653
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.19 E-value=6.2e-07 Score=70.97 Aligned_cols=93 Identities=23% Similarity=0.227 Sum_probs=50.3
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCC-CCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCc----cccc
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPF-QQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNS----IFSS 148 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l-~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~----~p~~ 148 (174)
++++|++++|++...........+..+ ++|+.|++++|.+++.........+..+++|++|++++|.+++. ++..
T Consensus 109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 188 (319)
T cd00116 109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG 188 (319)
T ss_pred cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence 366666666654421111111223444 66777777777766432221112255666777777777777632 3334
Q ss_pred cCCCCCCCEEEccCCccc
Q 048732 149 LGGLSSLKHLSLGTNELN 166 (174)
Q Consensus 149 l~~l~~L~~L~Ls~N~l~ 166 (174)
+..+++|++|++++|.++
T Consensus 189 l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 189 LKANCNLEVLDLNNNGLT 206 (319)
T ss_pred HHhCCCCCEEeccCCccC
Confidence 455567777777777765
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.15 E-value=3.4e-05 Score=68.37 Aligned_cols=37 Identities=8% Similarity=0.062 Sum_probs=28.6
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCCCC----CCCCCCCCCCCccc
Q 048732 24 SEGCLEQERSALLQLKHFFNDSKHLH----YWNDGENYSDCCQW 63 (174)
Q Consensus 24 ~~~~~~~~~~~L~~~~~~~~~~~~~~----~W~~~~~~~~~C~w 63 (174)
.....++|...++++.+.+..|.... +|++. +++|.-
T Consensus 57 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~---~~fc~~ 97 (754)
T PRK15370 57 PETASPEEIKSKFECLRMLAFPAYADNIQYSRGGA---DQYCIL 97 (754)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCchhhccccccCCC---Cccccc
Confidence 56678899999999999998876553 48874 678843
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.14 E-value=4.9e-07 Score=71.28 Aligned_cols=58 Identities=33% Similarity=0.328 Sum_probs=36.2
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCC
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFN 142 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~ 142 (174)
.++++||++|.+. .+ .++..-++.++.|++|+|.+. .+.. +..+++|+.||||+|.++
T Consensus 285 ~LtelDLS~N~I~----~i-DESvKL~Pkir~L~lS~N~i~-~v~n-----La~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 285 ELTELDLSGNLIT----QI-DESVKLAPKLRRLILSQNRIR-TVQN-----LAELPQLQLLDLSGNLLA 342 (490)
T ss_pred hhhhccccccchh----hh-hhhhhhccceeEEecccccee-eehh-----hhhcccceEeecccchhH
Confidence 4567777777554 12 233455667777777777765 3322 556777777777777765
No 29
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.11 E-value=6.4e-06 Score=72.91 Aligned_cols=87 Identities=21% Similarity=0.232 Sum_probs=47.9
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhh----------hcC-----CCCCCCEEecc
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLD----------RLS-----SLKNLKFLDLT 137 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~----------~~~-----~l~~L~~L~ls 137 (174)
..++.|+|++|++. .++... .++|+.|++++|.++ .+|..... .+. -..+|+.|+++
T Consensus 199 ~~L~~L~Ls~N~Lt----sLP~~l---~~nL~~L~Ls~N~Lt-sLP~~l~~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls 270 (754)
T PRK15370 199 EQITTLILDNNELK----SLPENL---QGNIKTLYANSNQLT-SIPATLPDTIQEMELSINRITELPERLPSALQSLDLF 270 (754)
T ss_pred cCCcEEEecCCCCC----cCChhh---ccCCCEEECCCCccc-cCChhhhccccEEECcCCccCcCChhHhCCCCEEECc
Confidence 45677777777665 333322 135555666655555 33432000 000 12357777777
Q ss_pred CCCCCCccccccCCCCCCCEEEccCCcccccCCC
Q 048732 138 LNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDI 171 (174)
Q Consensus 138 ~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP~ 171 (174)
+|+++ .+|..+. ++|+.|++++|+|++ +|.
T Consensus 271 ~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~ 300 (754)
T PRK15370 271 HNKIS-CLPENLP--EELRYLSVYDNSIRT-LPA 300 (754)
T ss_pred CCccC-ccccccC--CCCcEEECCCCcccc-Ccc
Confidence 77776 4666543 467888888887774 553
No 30
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.09 E-value=1.1e-05 Score=74.66 Aligned_cols=89 Identities=21% Similarity=0.175 Sum_probs=57.5
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
..++.|+++++++. .+ +..+..+++|+.|+++++...+.+|. ++.+++|+.|++++|.....+|..++.+
T Consensus 611 ~~L~~L~L~~s~l~----~L-~~~~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c~~L~~lp~si~~L 680 (1153)
T PLN03210 611 ENLVKLQMQGSKLE----KL-WDGVHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDCSSLVELPSSIQYL 680 (1153)
T ss_pred cCCcEEECcCcccc----cc-ccccccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCCCCccccchhhhcc
Confidence 35666677666554 22 23356677777777777654445664 5667777777777766555677777777
Q ss_pred CCCCEEEccCCcccccCCC
Q 048732 153 SSLKHLSLGTNELNGSIDI 171 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~g~iP~ 171 (174)
++|+.|++++|..-+.+|.
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred CCCCEEeCCCCCCcCccCC
Confidence 7777777777654445654
No 31
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.06 E-value=9.3e-07 Score=77.99 Aligned_cols=86 Identities=29% Similarity=0.424 Sum_probs=72.2
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~ 153 (174)
.+.+||+++|++. .+ |..+..+.+|+.|+++.|.+. ..|.. ..++.+|+++.|..|++. ..|..+..++
T Consensus 46 ~L~~l~lsnn~~~----~f-p~~it~l~~L~~ln~s~n~i~-~vp~s----~~~~~~l~~lnL~~n~l~-~lP~~~~~lk 114 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS----SF-PIQITLLSHLRQLNLSRNYIR-SVPSS----CSNMRNLQYLNLKNNRLQ-SLPASISELK 114 (1081)
T ss_pred eeEEeeccccccc----cC-CchhhhHHHHhhcccchhhHh-hCchh----hhhhhcchhheeccchhh-cCchhHHhhh
Confidence 3899999999776 23 334677889999999999987 67766 889999999999999998 8999999999
Q ss_pred CCCEEEccCCcccccCCC
Q 048732 154 SLKHLSLGTNELNGSIDI 171 (174)
Q Consensus 154 ~L~~L~Ls~N~l~g~iP~ 171 (174)
+|++|+++.|+|. .+|.
T Consensus 115 nl~~LdlS~N~f~-~~Pl 131 (1081)
T KOG0618|consen 115 NLQYLDLSFNHFG-PIPL 131 (1081)
T ss_pred cccccccchhccC-CCch
Confidence 9999999999987 5663
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.03 E-value=3.1e-06 Score=69.36 Aligned_cols=87 Identities=32% Similarity=0.446 Sum_probs=68.7
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCC-CCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQ-QLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~-~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
.++.+++.+|++. .+++ ....+. +|+.|++++|.+. .+|.. +..+++|+.|+++.|+++ .+|...+.+
T Consensus 117 ~l~~L~l~~n~i~----~i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~----~~~l~~L~~L~l~~N~l~-~l~~~~~~~ 185 (394)
T COG4886 117 NLTSLDLDNNNIT----DIPP-LIGLLKSNLKELDLSDNKIE-SLPSP----LRNLPNLKNLDLSFNDLS-DLPKLLSNL 185 (394)
T ss_pred ceeEEecCCcccc----cCcc-ccccchhhcccccccccchh-hhhhh----hhccccccccccCCchhh-hhhhhhhhh
Confidence 5788888888776 4433 345553 8999999999987 55433 789999999999999998 777766688
Q ss_pred CCCCEEEccCCcccccCCCC
Q 048732 153 SSLKHLSLGTNELNGSIDIE 172 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~g~iP~~ 172 (174)
+.|+.|++++|+++ .||..
T Consensus 186 ~~L~~L~ls~N~i~-~l~~~ 204 (394)
T COG4886 186 SNLNNLDLSGNKIS-DLPPE 204 (394)
T ss_pred hhhhheeccCCccc-cCchh
Confidence 89999999999998 57653
No 33
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.92 E-value=3.2e-05 Score=71.77 Aligned_cols=88 Identities=20% Similarity=0.125 Sum_probs=63.2
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
.+++.|+|++++.. . .+ | .+..+++|+.|++++|.....+|.. +..+++|+.|++++|..-+.+|..+ .+
T Consensus 634 ~~Lk~L~Ls~~~~l-~--~i-p-~ls~l~~Le~L~L~~c~~L~~lp~s----i~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 634 TGLRNIDLRGSKNL-K--EI-P-DLSMATNLETLKLSDCSSLVELPSS----IQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred CCCCEEECCCCCCc-C--cC-C-ccccCCcccEEEecCCCCccccchh----hhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 47888999876543 1 12 3 3677889999999988766678877 8888889999988865545777655 56
Q ss_pred CCCCEEEccCCcccccCC
Q 048732 153 SSLKHLSLGTNELNGSID 170 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~g~iP 170 (174)
++|+.|++++|...+.+|
T Consensus 704 ~sL~~L~Lsgc~~L~~~p 721 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFP 721 (1153)
T ss_pred CCCCEEeCCCCCCccccc
Confidence 777777777765544444
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.89 E-value=7.3e-07 Score=75.18 Aligned_cols=64 Identities=25% Similarity=0.321 Sum_probs=49.7
Q ss_pred ccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccc
Q 048732 97 FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNG 167 (174)
Q Consensus 97 ~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g 167 (174)
++.+.+|+.|.+..|.+. .+|++ +..|+ |..||+|.|+++ .||-.|.+|+.|++|-|.+|.++.
T Consensus 185 l~~l~slr~l~vrRn~l~-~lp~E----l~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 185 LGYLTSLRDLNVRRNHLE-DLPEE----LCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hhhHHHHHHHHHhhhhhh-hCCHH----HhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence 455566666666666655 34544 55555 899999999999 899999999999999999999883
No 35
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.86 E-value=2.9e-05 Score=68.85 Aligned_cols=33 Identities=24% Similarity=0.293 Sum_probs=17.3
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccc
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNIT 114 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~ 114 (174)
+++.|++++|++. .++. .+++|++|++++|+++
T Consensus 223 ~L~~L~L~~N~Lt----~LP~----lp~~Lk~LdLs~N~Lt 255 (788)
T PRK15387 223 HITTLVIPDNNLT----SLPA----LPPELRTLEVSGNQLT 255 (788)
T ss_pred CCCEEEccCCcCC----CCCC----CCCCCcEEEecCCccC
Confidence 4556666666554 2221 1355666666666555
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.82 E-value=6.6e-06 Score=73.96 Aligned_cols=88 Identities=27% Similarity=0.336 Sum_probs=72.3
Q ss_pred CcEEEEEcCCCC--CCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccC
Q 048732 73 GRVIKLDLAFRK--RDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLG 150 (174)
Q Consensus 73 ~~v~~L~L~~n~--~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~ 150 (174)
..+++|-+..|. +. .++.+.|..++.|..||+++|.--+.+|.. ++.+-+|++|+++...++ .+|..++
T Consensus 545 ~~L~tLll~~n~~~l~----~is~~ff~~m~~LrVLDLs~~~~l~~LP~~----I~~Li~LryL~L~~t~I~-~LP~~l~ 615 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLL----EISGEFFRSLPLLRVLDLSGNSSLSKLPSS----IGELVHLRYLDLSDTGIS-HLPSGLG 615 (889)
T ss_pred CccceEEEeecchhhh----hcCHHHHhhCcceEEEECCCCCccCcCChH----HhhhhhhhcccccCCCcc-ccchHHH
Confidence 357777777764 33 344556888999999999998877789988 999999999999999999 8999999
Q ss_pred CCCCCCEEEccCCcccccC
Q 048732 151 GLSSLKHLSLGTNELNGSI 169 (174)
Q Consensus 151 ~l~~L~~L~Ls~N~l~g~i 169 (174)
+|+.|.+||+..+.....+
T Consensus 616 ~Lk~L~~Lnl~~~~~l~~~ 634 (889)
T KOG4658|consen 616 NLKKLIYLNLEVTGRLESI 634 (889)
T ss_pred HHHhhheeccccccccccc
Confidence 9999999999987654333
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.78 E-value=6.3e-06 Score=65.12 Aligned_cols=62 Identities=34% Similarity=0.426 Sum_probs=53.1
Q ss_pred cCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCccc
Q 048732 98 TPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELN 166 (174)
Q Consensus 98 ~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~ 166 (174)
...+.|+++|+|+|.++ .+.+. ..-+|.++.|++|+|.+. .+.. +..+++|+.|||++|.++
T Consensus 281 dTWq~LtelDLS~N~I~-~iDES----vKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDES----VKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA 342 (490)
T ss_pred chHhhhhhccccccchh-hhhhh----hhhccceeEEecccccee-eehh-hhhcccceEeecccchhH
Confidence 34567999999999998 67776 788999999999999998 4433 888999999999999876
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.62 E-value=2.7e-06 Score=71.79 Aligned_cols=78 Identities=29% Similarity=0.397 Sum_probs=35.1
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~ 153 (174)
.++.+||+.|++. .+ |..+..|+ |+.|-+++|+++ .+|+. ++.++.|..||.+.|.+. .+|..++++.
T Consensus 122 ~lt~l~ls~NqlS----~l-p~~lC~lp-Lkvli~sNNkl~-~lp~~----ig~~~tl~~ld~s~nei~-slpsql~~l~ 189 (722)
T KOG0532|consen 122 ALTFLDLSSNQLS----HL-PDGLCDLP-LKVLIVSNNKLT-SLPEE----IGLLPTLAHLDVSKNEIQ-SLPSQLGYLT 189 (722)
T ss_pred HHHHhhhccchhh----cC-ChhhhcCc-ceeEEEecCccc-cCCcc----cccchhHHHhhhhhhhhh-hchHHhhhHH
Confidence 3455566666554 12 22233333 455555555554 34444 444444444555554444 3444444443
Q ss_pred CCCEEEccCC
Q 048732 154 SLKHLSLGTN 163 (174)
Q Consensus 154 ~L~~L~Ls~N 163 (174)
+|+.|++.+|
T Consensus 190 slr~l~vrRn 199 (722)
T KOG0532|consen 190 SLRDLNVRRN 199 (722)
T ss_pred HHHHHHHhhh
Confidence 3333333333
No 39
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.48 E-value=1.6e-05 Score=56.10 Aligned_cols=86 Identities=21% Similarity=0.240 Sum_probs=65.7
Q ss_pred CcEEEEEcCCCCCCCCccccC--cccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMN--ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLG 150 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~--~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~ 150 (174)
.....++|+.+++. .+. ...+.....|+.+++++|.+. .+|+.. -..++.++.|++++|.++ .+|..+.
T Consensus 27 kE~h~ldLssc~lm----~i~davy~l~~~~el~~i~ls~N~fk-~fp~kf---t~kf~t~t~lNl~~neis-dvPeE~A 97 (177)
T KOG4579|consen 27 KELHFLDLSSCQLM----YIADAVYMLSKGYELTKISLSDNGFK-KFPKKF---TIKFPTATTLNLANNEIS-DVPEELA 97 (177)
T ss_pred HHhhhcccccchhh----HHHHHHHHHhCCceEEEEecccchhh-hCCHHH---hhccchhhhhhcchhhhh-hchHHHh
Confidence 44556777777654 221 112345667888999999998 677661 345668999999999999 8999999
Q ss_pred CCCCCCEEEccCCcccc
Q 048732 151 GLSSLKHLSLGTNELNG 167 (174)
Q Consensus 151 ~l~~L~~L~Ls~N~l~g 167 (174)
.++.|+.|+++.|.|..
T Consensus 98 am~aLr~lNl~~N~l~~ 114 (177)
T KOG4579|consen 98 AMPALRSLNLRFNPLNA 114 (177)
T ss_pred hhHHhhhcccccCcccc
Confidence 99999999999999874
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.47 E-value=3e-05 Score=63.60 Aligned_cols=80 Identities=33% Similarity=0.393 Sum_probs=66.3
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~ 153 (174)
.++.+++++|++. .+ +..+..++.|+.|++++|.+. .+|.. .+.++.|+.|++++|+++ .+|.....+.
T Consensus 141 nL~~L~l~~N~i~----~l-~~~~~~l~~L~~L~l~~N~l~-~l~~~----~~~~~~L~~L~ls~N~i~-~l~~~~~~~~ 209 (394)
T COG4886 141 NLKELDLSDNKIE----SL-PSPLRNLPNLKNLDLSFNDLS-DLPKL----LSNLSNLNNLDLSGNKIS-DLPPEIELLS 209 (394)
T ss_pred hcccccccccchh----hh-hhhhhccccccccccCCchhh-hhhhh----hhhhhhhhheeccCCccc-cCchhhhhhh
Confidence 7999999999876 22 234788999999999999998 66664 448899999999999998 7887766667
Q ss_pred CCCEEEccCCc
Q 048732 154 SLKHLSLGTNE 164 (174)
Q Consensus 154 ~L~~L~Ls~N~ 164 (174)
.|+.+.+++|+
T Consensus 210 ~L~~l~~~~N~ 220 (394)
T COG4886 210 ALEELDLSNNS 220 (394)
T ss_pred hhhhhhhcCCc
Confidence 79999999985
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.43 E-value=9.3e-06 Score=70.57 Aligned_cols=80 Identities=28% Similarity=0.339 Sum_probs=45.6
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~ 153 (174)
.+..|||++|++. . -+.+..+++|++|||++|.+. .+|... ...+. |+.|.+.+|.++ .+ ..+.+|+
T Consensus 188 ale~LnLshNk~~----~--v~~Lr~l~~LkhLDlsyN~L~-~vp~l~---~~gc~-L~~L~lrnN~l~-tL-~gie~Lk 254 (1096)
T KOG1859|consen 188 ALESLNLSHNKFT----K--VDNLRRLPKLKHLDLSYNCLR-HVPQLS---MVGCK-LQLLNLRNNALT-TL-RGIENLK 254 (1096)
T ss_pred Hhhhhccchhhhh----h--hHHHHhcccccccccccchhc-cccccc---hhhhh-heeeeecccHHH-hh-hhHHhhh
Confidence 5777888888765 1 124567788888888888887 455421 12222 555555555544 11 2244555
Q ss_pred CCCEEEccCCccc
Q 048732 154 SLKHLSLGTNELN 166 (174)
Q Consensus 154 ~L~~L~Ls~N~l~ 166 (174)
+|+.||++.|-|.
T Consensus 255 sL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLS 267 (1096)
T ss_pred hhhccchhHhhhh
Confidence 5555555555544
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.42 E-value=8.9e-05 Score=61.50 Aligned_cols=82 Identities=38% Similarity=0.395 Sum_probs=60.5
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
..+..+++..|++. .+. ..+..+++|+.|++++|.|+...+ +..++.|+.|++++|.++ .+ ..+..+
T Consensus 95 ~~l~~l~l~~n~i~----~i~-~~l~~~~~L~~L~ls~N~I~~i~~------l~~l~~L~~L~l~~N~i~-~~-~~~~~l 161 (414)
T KOG0531|consen 95 KSLEALDLYDNKIE----KIE-NLLSSLVNLQVLDLSFNKITKLEG------LSTLTLLKELNLSGNLIS-DI-SGLESL 161 (414)
T ss_pred cceeeeeccccchh----hcc-cchhhhhcchheeccccccccccc------hhhccchhhheeccCcch-hc-cCCccc
Confidence 56788888888776 221 125678889999999998885444 557777888888888887 33 335557
Q ss_pred CCCCEEEccCCcccc
Q 048732 153 SSLKHLSLGTNELNG 167 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~g 167 (174)
+.|+.+++++|+++.
T Consensus 162 ~~L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 162 KSLKLLDLSYNRIVD 176 (414)
T ss_pred hhhhcccCCcchhhh
Confidence 888888888888763
No 43
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.31 E-value=0.0004 Score=51.94 Aligned_cols=82 Identities=26% Similarity=0.187 Sum_probs=58.2
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCcccc--ccCC
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFS--SLGG 151 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~--~l~~ 151 (174)
+...+||++|.+. . -+.|..++.|.+|.+++|+|+..-|.. -..+++|+.|.|.+|.+. .+-+ -+..
T Consensus 43 ~~d~iDLtdNdl~----~--l~~lp~l~rL~tLll~nNrIt~I~p~L----~~~~p~l~~L~LtnNsi~-~l~dl~pLa~ 111 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR----K--LDNLPHLPRLHTLLLNNNRITRIDPDL----DTFLPNLKTLILTNNSIQ-ELGDLDPLAS 111 (233)
T ss_pred ccceecccccchh----h--cccCCCccccceEEecCCcceeeccch----hhhccccceEEecCcchh-hhhhcchhcc
Confidence 5677888888765 1 234777888999999999998554543 345677888888888876 3222 3567
Q ss_pred CCCCCEEEccCCccc
Q 048732 152 LSSLKHLSLGTNELN 166 (174)
Q Consensus 152 l~~L~~L~Ls~N~l~ 166 (174)
++.|++|.+-+|+.+
T Consensus 112 ~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 112 CPKLEYLTLLGNPVE 126 (233)
T ss_pred CCccceeeecCCchh
Confidence 788888888888754
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.24 E-value=0.00015 Score=65.35 Aligned_cols=84 Identities=29% Similarity=0.315 Sum_probs=70.3
Q ss_pred CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCC
Q 048732 72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGG 151 (174)
Q Consensus 72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~ 151 (174)
.+.+..|||++|.-. +. + |..++.|-+|++|+++...+. .+|.. ++++..|.+||+..+.....+|.....
T Consensus 570 m~~LrVLDLs~~~~l-~~--L-P~~I~~Li~LryL~L~~t~I~-~LP~~----l~~Lk~L~~Lnl~~~~~l~~~~~i~~~ 640 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSL-SK--L-PSSIGELVHLRYLDLSDTGIS-HLPSG----LGNLKKLIYLNLEVTGRLESIPGILLE 640 (889)
T ss_pred CcceEEEECCCCCcc-Cc--C-ChHHhhhhhhhcccccCCCcc-ccchH----HHHHHhhheeccccccccccccchhhh
Confidence 457899999987433 22 2 677899999999999999998 78988 999999999999998876677777888
Q ss_pred CCCCCEEEccCCc
Q 048732 152 LSSLKHLSLGTNE 164 (174)
Q Consensus 152 l~~L~~L~Ls~N~ 164 (174)
+++|++|.+....
T Consensus 641 L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 641 LQSLRVLRLPRSA 653 (889)
T ss_pred cccccEEEeeccc
Confidence 9999999986543
No 45
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.07 E-value=0.00022 Score=33.96 Aligned_cols=21 Identities=48% Similarity=0.651 Sum_probs=12.4
Q ss_pred CCCEEeccCCCCCCccccccCC
Q 048732 130 NLKFLDLTLNHFNNSIFSSLGG 151 (174)
Q Consensus 130 ~L~~L~ls~N~l~g~~p~~l~~ 151 (174)
+|++||+++|+|+ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3566666666666 56655543
No 46
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.06 E-value=0.00085 Score=50.23 Aligned_cols=79 Identities=27% Similarity=0.265 Sum_probs=57.9
Q ss_pred EEEEcCCCCCCCCccccCccccc-CCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCC
Q 048732 76 IKLDLAFRKRDSAEWYMNASLFT-PFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSS 154 (174)
Q Consensus 76 ~~L~L~~n~~~~g~~~~~~~~~~-~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~ 154 (174)
.+++|.+.++.. + .. ++ -+.+...+|+++|.+. .++. |..+++|.+|.+++|+++.+-|.--.-+++
T Consensus 22 ~e~~LR~lkip~----i-en-lg~~~d~~d~iDLtdNdl~-~l~~-----lp~l~rL~tLll~nNrIt~I~p~L~~~~p~ 89 (233)
T KOG1644|consen 22 RELDLRGLKIPV----I-EN-LGATLDQFDAIDLTDNDLR-KLDN-----LPHLPRLHTLLLNNNRITRIDPDLDTFLPN 89 (233)
T ss_pred cccccccccccc----h-hh-ccccccccceecccccchh-hccc-----CCCccccceEEecCCcceeeccchhhhccc
Confidence 466777665541 1 11 11 2456788999999986 3333 779999999999999999666665556688
Q ss_pred CCEEEccCCccc
Q 048732 155 LKHLSLGTNELN 166 (174)
Q Consensus 155 L~~L~Ls~N~l~ 166 (174)
|..|.|.+|+|.
T Consensus 90 l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 90 LKTLILTNNSIQ 101 (233)
T ss_pred cceEEecCcchh
Confidence 999999999876
No 47
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.06 E-value=0.00035 Score=53.87 Aligned_cols=66 Identities=30% Similarity=0.417 Sum_probs=47.5
Q ss_pred cccCCCCCCEEeCcCC--ccccccCcchhhhcCCCCCCCEEeccCCCCCCccccc---cCCCCCCCEEEccCCcccc
Q 048732 96 LFTPFQQLEFLDLSGN--NITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSS---LGGLSSLKHLSLGTNELNG 167 (174)
Q Consensus 96 ~~~~l~~L~~L~ls~N--~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~---l~~l~~L~~L~Ls~N~l~g 167 (174)
.|..|++|+.|+++.| ++.+.++.. ...+|+|++++++.|++.- +.. +..+.+|..|++.+|..++
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl----~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVL----AEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceeh----hhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccc
Confidence 3566788899999999 666666554 4566899999999998862 333 4456677888888776543
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.00012 Score=57.79 Aligned_cols=87 Identities=26% Similarity=0.321 Sum_probs=61.3
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCcc-ccccCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSI-FSSLGG 151 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~-p~~l~~ 151 (174)
.+|..+||.+|.+.. |+=....+.+|+.|+.|+++.|.+...|-.. -....+|++|-|.+..+...- ...+..
T Consensus 71 ~~v~elDL~~N~iSd--WseI~~ile~lP~l~~LNls~N~L~s~I~~l----p~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 71 TDVKELDLTGNLISD--WSEIGAILEQLPALTTLNLSCNSLSSDIKSL----PLPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred hhhhhhhcccchhcc--HHHHHHHHhcCccceEeeccCCcCCCccccC----cccccceEEEEEcCCCCChhhhhhhhhc
Confidence 478899999997762 2112344678999999999999998665442 135678888888887775432 334567
Q ss_pred CCCCCEEEccCCcc
Q 048732 152 LSSLKHLSLGTNEL 165 (174)
Q Consensus 152 l~~L~~L~Ls~N~l 165 (174)
++.++.|+++.|++
T Consensus 145 lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 145 LPKVTELHMSDNSL 158 (418)
T ss_pred chhhhhhhhccchh
Confidence 78888888888843
No 49
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.00022 Score=58.78 Aligned_cols=67 Identities=22% Similarity=0.266 Sum_probs=40.2
Q ss_pred ccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCc-cccc-----cCCCCCCCEEEccCCccc
Q 048732 97 FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNS-IFSS-----LGGLSSLKHLSLGTNELN 166 (174)
Q Consensus 97 ~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~-~p~~-----l~~l~~L~~L~Ls~N~l~ 166 (174)
...+..|++|||++|++. ..+.. .-.+.++.|+.|+++.+.++.. +|+. ...+++|++|+++.|++.
T Consensus 242 ~~i~~~L~~LdLs~N~li-~~~~~--~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 242 TKILQTLQELDLSNNNLI-DFDQG--YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhhhhHHhhccccCCccc-ccccc--cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 344667777777777765 23311 0056677777777777776532 2332 234567777777777763
No 50
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.96 E-value=0.00041 Score=53.53 Aligned_cols=64 Identities=27% Similarity=0.332 Sum_probs=48.2
Q ss_pred ccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCC--CCCCccccccCCCCCCCEEEccCCccc
Q 048732 97 FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLN--HFNNSIFSSLGGLSSLKHLSLGTNELN 166 (174)
Q Consensus 97 ~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N--~l~g~~p~~l~~l~~L~~L~Ls~N~l~ 166 (174)
...+..|+.+.+.+-.++... . +..+++|+.|++|.| +.++.++.....+++|++|+++.|+|+
T Consensus 39 ~d~~~~le~ls~~n~gltt~~-~-----~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLT-N-----FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccchhhhhhhccceeecc-c-----CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 344556666666666665322 1 668899999999999 667777666667799999999999987
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.91 E-value=5e-05 Score=66.20 Aligned_cols=81 Identities=25% Similarity=0.297 Sum_probs=58.7
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~ 153 (174)
.+..++.++|.+. .-..++.-++.|+.|+|+.|++... . . +..++.|++|||++|.++ .+|..-..--
T Consensus 165 ~L~~a~fsyN~L~-----~mD~SLqll~ale~LnLshNk~~~v-~-~----Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc 232 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-----LMDESLQLLPALESLNLSHNKFTKV-D-N----LRRLPKLKHLDLSYNCLR-HVPQLSMVGC 232 (1096)
T ss_pred hHhhhhcchhhHH-----hHHHHHHHHHHhhhhccchhhhhhh-H-H----HHhcccccccccccchhc-cccccchhhh
Confidence 4566677777654 2244566678899999999998743 2 2 788999999999999998 7776322222
Q ss_pred CCCEEEccCCccc
Q 048732 154 SLKHLSLGTNELN 166 (174)
Q Consensus 154 ~L~~L~Ls~N~l~ 166 (174)
.|..|.+++|.++
T Consensus 233 ~L~~L~lrnN~l~ 245 (1096)
T KOG1859|consen 233 KLQLLNLRNNALT 245 (1096)
T ss_pred hheeeeecccHHH
Confidence 4999999999765
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.89 E-value=0.0005 Score=57.06 Aligned_cols=80 Identities=33% Similarity=0.372 Sum_probs=60.4
Q ss_pred EEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCC
Q 048732 75 VIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSS 154 (174)
Q Consensus 75 v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~ 154 (174)
+..++++.|.+.. + ...+..+++|+.+++..|.+.+... . +..+++|++|++++|.++...+ +..++.
T Consensus 74 l~~l~l~~n~i~~----~-~~~l~~~~~l~~l~l~~n~i~~i~~-~----l~~~~~L~~L~ls~N~I~~i~~--l~~l~~ 141 (414)
T KOG0531|consen 74 LKELNLRQNLIAK----I-LNHLSKLKSLEALDLYDNKIEKIEN-L----LSSLVNLQVLDLSFNKITKLEG--LSTLTL 141 (414)
T ss_pred HHhhccchhhhhh----h-hcccccccceeeeeccccchhhccc-c----hhhhhcchheeccccccccccc--hhhccc
Confidence 4445566665541 1 2236788999999999999985433 2 4579999999999999985433 667788
Q ss_pred CCEEEccCCccc
Q 048732 155 LKHLSLGTNELN 166 (174)
Q Consensus 155 L~~L~Ls~N~l~ 166 (174)
|+.|++++|.|+
T Consensus 142 L~~L~l~~N~i~ 153 (414)
T KOG0531|consen 142 LKELNLSGNLIS 153 (414)
T ss_pred hhhheeccCcch
Confidence 999999999987
No 53
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.52 E-value=0.0014 Score=52.64 Aligned_cols=18 Identities=39% Similarity=0.517 Sum_probs=8.4
Q ss_pred cCCCCCCCEEeccCCCCC
Q 048732 125 LSSLKNLKFLDLTLNHFN 142 (174)
Q Consensus 125 ~~~l~~L~~L~ls~N~l~ 142 (174)
+..+++|++|||.+|.|+
T Consensus 209 l~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred HHhCCcceeeecccchhh
Confidence 444444444444444443
No 54
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.51 E-value=3.8e-05 Score=58.68 Aligned_cols=84 Identities=20% Similarity=0.120 Sum_probs=72.0
Q ss_pred CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCC
Q 048732 72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGG 151 (174)
Q Consensus 72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~ 151 (174)
..+++.||++.|++. .+ ..-|..++.|..||++.|.+. ..|.. ++....++.+++..|..+ ..|.+++.
T Consensus 41 ~kr~tvld~~s~r~v----n~-~~n~s~~t~~~rl~~sknq~~-~~~~d----~~q~~e~~~~~~~~n~~~-~~p~s~~k 109 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV----NL-GKNFSILTRLVRLDLSKNQIK-FLPKD----AKQQRETVNAASHKNNHS-QQPKSQKK 109 (326)
T ss_pred cceeeeehhhhhHHH----hh-ccchHHHHHHHHHhccHhhHh-hChhh----HHHHHHHHHHHhhccchh-hCCccccc
Confidence 468999999999765 22 344777889999999999987 67877 888999999999999998 89999999
Q ss_pred CCCCCEEEccCCccc
Q 048732 152 LSSLKHLSLGTNELN 166 (174)
Q Consensus 152 l~~L~~L~Ls~N~l~ 166 (174)
.++++++++-.|.|.
T Consensus 110 ~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEFF 124 (326)
T ss_pred cCCcchhhhccCcch
Confidence 999999999998875
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.30 E-value=0.0014 Score=52.60 Aligned_cols=93 Identities=25% Similarity=0.191 Sum_probs=47.1
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCc----ccccc
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNS----IFSSL 149 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~----~p~~l 149 (174)
.+..+.++.|.+....+.+....|..+++|+.||+..|.++..-.......+..+++|+.|+++++.++.. +-+.+
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 46666666666543222222334567777777777777776321111111245555666666666555422 11112
Q ss_pred -CCCCCCCEEEccCCccc
Q 048732 150 -GGLSSLKHLSLGTNELN 166 (174)
Q Consensus 150 -~~l~~L~~L~Ls~N~l~ 166 (174)
...++|++|.+.+|.++
T Consensus 266 ~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEIT 283 (382)
T ss_pred hccCCCCceeccCcchhH
Confidence 12345555555555544
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.27 E-value=0.0021 Score=56.81 Aligned_cols=92 Identities=27% Similarity=0.391 Sum_probs=50.7
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCcccccc-----Cc--------------chhhhcCCCCCCCE
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCV-----QN--------------EGLDRLSSLKNLKF 133 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~-----p~--------------~~~~~~~~l~~L~~ 133 (174)
+.+++|.+++..+....+ .....++++|..||+|+.+++... .. .....+-+|++|++
T Consensus 148 PsL~sL~i~~~~~~~~dF---~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 148 PSLRSLVISGRQFDNDDF---SQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred cccceEEecCceecchhH---HHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 456666666654442221 223456777777777777665220 00 00122456777778
Q ss_pred EeccCCCCCCcc--cc----ccCCCCCCCEEEccCCcccc
Q 048732 134 LDLTLNHFNNSI--FS----SLGGLSSLKHLSLGTNELNG 167 (174)
Q Consensus 134 L~ls~N~l~g~~--p~----~l~~l~~L~~L~Ls~N~l~g 167 (174)
||+|..+..... .. .-..|++|+.||.|++.+.+
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 888776654221 11 12356778888887776654
No 57
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.00084 Score=55.44 Aligned_cols=63 Identities=29% Similarity=0.363 Sum_probs=34.5
Q ss_pred CCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccc--cccCCCCCCCEEEccCCccc
Q 048732 99 PFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIF--SSLGGLSSLKHLSLGTNELN 166 (174)
Q Consensus 99 ~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p--~~l~~l~~L~~L~Ls~N~l~ 166 (174)
.+++|+.|++..|..-+..... ...+..|+.|||++|.+- ..+ ...+.++.|+.|+++.+.+.
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~----~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATS----TKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIA 284 (505)
T ss_pred hCCcHHHhhhhcccccceecch----hhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcc
Confidence 3455555555555311111111 335666777777777765 333 23556677777777776654
No 58
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.00 E-value=0.00027 Score=55.49 Aligned_cols=79 Identities=24% Similarity=0.188 Sum_probs=55.0
Q ss_pred CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccc---
Q 048732 72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSS--- 148 (174)
Q Consensus 72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~--- 148 (174)
...+..|.|+-|++. .+. .+..+++|++|+|..|.|. .+.+. .++.++|+|++|+|..|.-.|.-+..
T Consensus 40 Mp~lEVLsLSvNkIs----sL~--pl~rCtrLkElYLRkN~I~-sldEL--~YLknlpsLr~LWL~ENPCc~~ag~nYR~ 110 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKIS----SLA--PLQRCTRLKELYLRKNCIE-SLDEL--EYLKNLPSLRTLWLDENPCCGEAGQNYRR 110 (388)
T ss_pred cccceeEEeeccccc----cch--hHHHHHHHHHHHHHhcccc-cHHHH--HHHhcCchhhhHhhccCCcccccchhHHH
Confidence 567788888888776 332 3667888888888888876 33332 34788888899888888887765543
Q ss_pred --cCCCCCCCEEE
Q 048732 149 --LGGLSSLKHLS 159 (174)
Q Consensus 149 --l~~l~~L~~L~ 159 (174)
+.-|++|+.||
T Consensus 111 ~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 111 KVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHcccchhcc
Confidence 34566666664
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.95 E-value=0.0071 Score=47.56 Aligned_cols=70 Identities=26% Similarity=0.227 Sum_probs=41.0
Q ss_pred ccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCc----cccc---------cCCCCCCCEEEccCC
Q 048732 97 FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNS----IFSS---------LGGLSSLKHLSLGTN 163 (174)
Q Consensus 97 ~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~----~p~~---------l~~l~~L~~L~Ls~N 163 (174)
+.++++|+..++|.|.+....|+.....++.-..|++|.+++|.+... |-.. ...-+.|++....+|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 445667777777777776666665444566666777777777766311 1111 112355666766666
Q ss_pred ccc
Q 048732 164 ELN 166 (174)
Q Consensus 164 ~l~ 166 (174)
++.
T Consensus 168 Rle 170 (388)
T COG5238 168 RLE 170 (388)
T ss_pred hhc
Confidence 654
No 60
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.90 E-value=0.0036 Score=29.66 Aligned_cols=18 Identities=56% Similarity=0.960 Sum_probs=14.7
Q ss_pred CCCEEeCcCCccccccCcc
Q 048732 102 QLEFLDLSGNNITGCVQNE 120 (174)
Q Consensus 102 ~L~~L~ls~N~l~g~~p~~ 120 (174)
+|++||+++|+++ .+|+.
T Consensus 1 ~L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp TESEEEETSSEES-EEGTT
T ss_pred CccEEECCCCcCE-eCChh
Confidence 4788999999888 78775
No 61
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.79 E-value=0.0068 Score=26.88 Aligned_cols=11 Identities=45% Similarity=0.670 Sum_probs=3.3
Q ss_pred CCEEeccCCCC
Q 048732 131 LKFLDLTLNHF 141 (174)
Q Consensus 131 L~~L~ls~N~l 141 (174)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 34444444443
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.13 E-value=0.00071 Score=53.14 Aligned_cols=84 Identities=32% Similarity=0.252 Sum_probs=65.4
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCcccc--ccCC
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFS--SLGG 151 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~--~l~~ 151 (174)
.|..|++-+..+. . -....+|+.|+.|.|+-|.++..-| +..+++|+.|.|..|.|. .+-+ .+.+
T Consensus 20 ~vkKLNcwg~~L~----D--Isic~kMp~lEVLsLSvNkIssL~p------l~rCtrLkElYLRkN~I~-sldEL~YLkn 86 (388)
T KOG2123|consen 20 NVKKLNCWGCGLD----D--ISICEKMPLLEVLSLSVNKISSLAP------LQRCTRLKELYLRKNCIE-SLDELEYLKN 86 (388)
T ss_pred HhhhhcccCCCcc----H--HHHHHhcccceeEEeeccccccchh------HHHHHHHHHHHHHhcccc-cHHHHHHHhc
Confidence 4566666666554 1 1235689999999999999986555 779999999999999997 4432 5789
Q ss_pred CCCCCEEEccCCcccccCC
Q 048732 152 LSSLKHLSLGTNELNGSID 170 (174)
Q Consensus 152 l~~L~~L~Ls~N~l~g~iP 170 (174)
+++|+.|.|..|.-.|.-+
T Consensus 87 lpsLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 87 LPSLRTLWLDENPCCGEAG 105 (388)
T ss_pred CchhhhHhhccCCcccccc
Confidence 9999999999999877544
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.05 E-value=0.014 Score=51.62 Aligned_cols=76 Identities=18% Similarity=0.222 Sum_probs=48.2
Q ss_pred CCcEEEEEcCCCCCCC--C-------------ccccCc----ccccCCCCCCEEeCcCCccccc--cCcchhhhcCCCCC
Q 048732 72 TGRVIKLDLAFRKRDS--A-------------EWYMNA----SLFTPFQQLEFLDLSGNNITGC--VQNEGLDRLSSLKN 130 (174)
Q Consensus 72 ~~~v~~L~L~~n~~~~--g-------------~~~~~~----~~~~~l~~L~~L~ls~N~l~g~--~p~~~~~~~~~l~~ 130 (174)
-+++..||+|+.++.. | .+.+.. ..+.+|++|+.||+|....... +......--..+|+
T Consensus 172 FpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lpe 251 (699)
T KOG3665|consen 172 FPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPE 251 (699)
T ss_pred cCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCcc
Confidence 4679999999987762 1 011111 1245789999999998765422 12111011235899
Q ss_pred CCEEeccCCCCCCcccc
Q 048732 131 LKFLDLTLNHFNNSIFS 147 (174)
Q Consensus 131 L~~L~ls~N~l~g~~p~ 147 (174)
|+.||.|++.+.+.+-+
T Consensus 252 LrfLDcSgTdi~~~~le 268 (699)
T KOG3665|consen 252 LRFLDCSGTDINEEILE 268 (699)
T ss_pred ccEEecCCcchhHHHHH
Confidence 99999999998866544
No 64
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.64 E-value=0.026 Score=27.61 Aligned_cols=14 Identities=36% Similarity=0.672 Sum_probs=6.9
Q ss_pred CCCCEEEccCCccc
Q 048732 153 SSLKHLSLGTNELN 166 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~ 166 (174)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34455555555544
No 65
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.64 E-value=0.026 Score=27.61 Aligned_cols=14 Identities=36% Similarity=0.672 Sum_probs=6.9
Q ss_pred CCCCEEEccCCccc
Q 048732 153 SSLKHLSLGTNELN 166 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~ 166 (174)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34455555555544
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.52 E-value=0.039 Score=43.53 Aligned_cols=17 Identities=29% Similarity=0.151 Sum_probs=13.1
Q ss_pred CCCCCCCEEEccCCccc
Q 048732 150 GGLSSLKHLSLGTNELN 166 (174)
Q Consensus 150 ~~l~~L~~L~Ls~N~l~ 166 (174)
..+++|++|||.+|-|+
T Consensus 211 ~y~~~LevLDlqDNtft 227 (388)
T COG5238 211 FYSHSLEVLDLQDNTFT 227 (388)
T ss_pred HHhCcceeeeccccchh
Confidence 35678888888888776
No 67
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.24 E-value=0.02 Score=45.68 Aligned_cols=66 Identities=29% Similarity=0.273 Sum_probs=47.6
Q ss_pred CCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCccc
Q 048732 99 PFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELN 166 (174)
Q Consensus 99 ~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~ 166 (174)
..+.++++|+.+|.++ ...+. +..+.++|.|++|+++.|.++..|-..--.+++|++|-|.+..+.
T Consensus 69 ~~~~v~elDL~~N~iS-dWseI-~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~ 134 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLIS-DWSEI-GAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS 134 (418)
T ss_pred Hhhhhhhhhcccchhc-cHHHH-HHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC
Confidence 4678999999999997 22221 122779999999999999998555332245678888888776543
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.05 E-value=0.22 Score=33.70 Aligned_cols=35 Identities=29% Similarity=0.345 Sum_probs=12.7
Q ss_pred cCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEcc
Q 048732 125 LSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLG 161 (174)
Q Consensus 125 ~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls 161 (174)
|..+++|+.+++..+ ++..-...|.+. +|+.+.+.
T Consensus 77 F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 77 FSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccccccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 444555555555443 331222234443 45555544
No 69
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.98 E-value=0.051 Score=26.51 Aligned_cols=19 Identities=42% Similarity=0.539 Sum_probs=14.6
Q ss_pred CCCCCEEeccCCCCCCcccc
Q 048732 128 LKNLKFLDLTLNHFNNSIFS 147 (174)
Q Consensus 128 l~~L~~L~ls~N~l~g~~p~ 147 (174)
+++|++|+|++|+++ .+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCCEEECCCCcCC-cCCH
Confidence 467888999999888 5554
No 70
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.98 E-value=0.051 Score=26.51 Aligned_cols=19 Identities=42% Similarity=0.539 Sum_probs=14.6
Q ss_pred CCCCCEEeccCCCCCCcccc
Q 048732 128 LKNLKFLDLTLNHFNNSIFS 147 (174)
Q Consensus 128 l~~L~~L~ls~N~l~g~~p~ 147 (174)
+++|++|+|++|+++ .+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCCEEECCCCcCC-cCCH
Confidence 467888999999888 5554
No 71
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.73 E-value=0.15 Score=42.56 Aligned_cols=31 Identities=29% Similarity=0.210 Sum_probs=15.5
Q ss_pred CCCEEeccCCCCCCccccccCCCCCCCEEEccCC
Q 048732 130 NLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTN 163 (174)
Q Consensus 130 ~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N 163 (174)
+|++|+++++... .+|..+. .+|+.|+++.|
T Consensus 157 SLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 157 SLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred cccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 4555555555543 2333222 35666666554
No 72
>PRK15386 type III secretion protein GogB; Provisional
Probab=92.23 E-value=0.4 Score=40.07 Aligned_cols=52 Identities=10% Similarity=0.002 Sum_probs=27.7
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCC
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLN 139 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N 139 (174)
..+.|+++++++. .++ . --.+|+.|.++++.--..+|.. + .++|+.|++++|
T Consensus 53 ~l~~L~Is~c~L~----sLP-~---LP~sLtsL~Lsnc~nLtsLP~~----L--P~nLe~L~Ls~C 104 (426)
T PRK15386 53 ASGRLYIKDCDIE----SLP-V---LPNELTEITIENCNNLTTLPGS----I--PEGLEKLTVCHC 104 (426)
T ss_pred CCCEEEeCCCCCc----ccC-C---CCCCCcEEEccCCCCcccCCch----h--hhhhhheEccCc
Confidence 4567777777554 232 1 1235777777653222244543 2 345666666666
No 73
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=91.09 E-value=0.16 Score=25.11 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=10.9
Q ss_pred CCCCEEeccCCCCCCcccc
Q 048732 129 KNLKFLDLTLNHFNNSIFS 147 (174)
Q Consensus 129 ~~L~~L~ls~N~l~g~~p~ 147 (174)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 34666666666666 5554
No 74
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.94 E-value=0.14 Score=24.43 Aligned_cols=15 Identities=27% Similarity=0.545 Sum_probs=8.6
Q ss_pred CCCCEEEccCCcccc
Q 048732 153 SSLKHLSLGTNELNG 167 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~g 167 (174)
++|+.|+|++|+|+.
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 567777777777653
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=89.64 E-value=1 Score=30.41 Aligned_cols=80 Identities=13% Similarity=0.262 Sum_probs=50.2
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
..++.+.+... +. .+....|..+++|+.+.+..+ +. .++... |..+++|+.+.+.. .+...-...|..+
T Consensus 12 ~~l~~i~~~~~-~~----~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~---F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 12 SNLESITFPNT-IK----KIGENAFSNCTSLKSINFPNN-LT-SIGDNA---FSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp TT--EEEETST-------EE-TTTTTT-TT-SEEEESST-TS-CE-TTT---TTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred CCCCEEEECCC-ee----EeChhhccccccccccccccc-cc-ccceee---eecccccccccccc-ccccccccccccc
Confidence 36788888753 54 566778999999999999886 54 455443 88998999999976 4442334567779
Q ss_pred CCCCEEEccCC
Q 048732 153 SSLKHLSLGTN 163 (174)
Q Consensus 153 ~~L~~L~Ls~N 163 (174)
++|+.+++..|
T Consensus 81 ~~l~~i~~~~~ 91 (129)
T PF13306_consen 81 TNLKNIDIPSN 91 (129)
T ss_dssp TTECEEEETTT
T ss_pred ccccccccCcc
Confidence 99999999765
No 76
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=89.26 E-value=0.15 Score=40.84 Aligned_cols=82 Identities=21% Similarity=0.235 Sum_probs=51.5
Q ss_pred CcEEEEEcCCCCCC--CCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccc--
Q 048732 73 GRVIKLDLAFRKRD--SAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSS-- 148 (174)
Q Consensus 73 ~~v~~L~L~~n~~~--~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~-- 148 (174)
..+++|+|++..-. ..++ .......++|.+|||+.|..-.. .-+.+|-.++.|++|.++.+. +++|..
T Consensus 286 e~l~~LNlsG~rrnl~~sh~---~tL~~rcp~l~~LDLSD~v~l~~---~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~ 357 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHL---STLVRRCPNLVHLDLSDSVMLKN---DCFQEFFKFNYLQHLSLSRCY--DIIPETLL 357 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHH---HHHHHhCCceeeeccccccccCc---hHHHHHHhcchheeeehhhhc--CCChHHee
Confidence 56788888875321 0111 11234678899999998754211 222337788889988887765 456663
Q ss_pred -cCCCCCCCEEEccC
Q 048732 149 -LGGLSSLKHLSLGT 162 (174)
Q Consensus 149 -l~~l~~L~~L~Ls~ 162 (174)
+...++|.+||+.+
T Consensus 358 ~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 358 ELNSKPSLVYLDVFG 372 (419)
T ss_pred eeccCcceEEEEecc
Confidence 56778888888764
No 77
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=89.12 E-value=0.35 Score=23.87 Aligned_cols=15 Identities=33% Similarity=0.656 Sum_probs=10.3
Q ss_pred CCCCCEEEccCCccc
Q 048732 152 LSSLKHLSLGTNELN 166 (174)
Q Consensus 152 l~~L~~L~Ls~N~l~ 166 (174)
+++|+.|++++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356777777777765
No 78
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=86.71 E-value=0.55 Score=23.37 Aligned_cols=14 Identities=43% Similarity=0.679 Sum_probs=9.5
Q ss_pred CCCCEEEccCCccc
Q 048732 153 SSLKHLSLGTNELN 166 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~ 166 (174)
++|++|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45777777777764
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.68 E-value=0.0096 Score=45.84 Aligned_cols=71 Identities=20% Similarity=0.221 Sum_probs=57.1
Q ss_pred cccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCCC
Q 048732 94 ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDI 171 (174)
Q Consensus 94 ~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP~ 171 (174)
-..+..+...+.||++.|++.. +-.. |+.++.|..||++.|.+. ..|..++++..++.+++..|..+ ..|.
T Consensus 35 v~ei~~~kr~tvld~~s~r~vn-~~~n----~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~ 105 (326)
T KOG0473|consen 35 VREIASFKRVTVLDLSSNRLVN-LGKN----FSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK 105 (326)
T ss_pred hhhhhccceeeeehhhhhHHHh-hccc----hHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc
Confidence 3446677889999999999863 3333 778889999999999998 78999999999999999999876 3443
No 80
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=86.63 E-value=0.54 Score=37.78 Aligned_cols=16 Identities=38% Similarity=0.465 Sum_probs=7.6
Q ss_pred ccCCCCCCEEeCcCCc
Q 048732 97 FTPFQQLEFLDLSGNN 112 (174)
Q Consensus 97 ~~~l~~L~~L~ls~N~ 112 (174)
|-+++.|++|.++.+.
T Consensus 334 ~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 334 FFKFNYLQHLSLSRCY 349 (419)
T ss_pred HHhcchheeeehhhhc
Confidence 3344555555554443
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.59 E-value=0.25 Score=37.22 Aligned_cols=82 Identities=17% Similarity=0.125 Sum_probs=44.3
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcC-CCCCCCEEeccCC-CCCCccccccCC
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLS-SLKNLKFLDLTLN-HFNNSIFSSLGG 151 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~-~l~~L~~L~ls~N-~l~g~~p~~l~~ 151 (174)
-|+.+|=++..+.... -+-+.+++.++.|.+.++.--+..-- ..++ -.++|+.|+++.| +||..=-..+..
T Consensus 102 ~IeaVDAsds~I~~eG----le~L~~l~~i~~l~l~~ck~~dD~~L---~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~ 174 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEG----LEHLRDLRSIKSLSLANCKYFDDWCL---ERLGGLAPSLQDLDLSGCPRITDGGLACLLK 174 (221)
T ss_pred eEEEEecCCchHHHHH----HHHHhccchhhhheeccccchhhHHH---HHhcccccchheeeccCCCeechhHHHHHHH
Confidence 4666666665554111 12345666666666666543222110 0022 3567888888865 565433345667
Q ss_pred CCCCCEEEccC
Q 048732 152 LSSLKHLSLGT 162 (174)
Q Consensus 152 l~~L~~L~Ls~ 162 (174)
+++|+.|++.+
T Consensus 175 lknLr~L~l~~ 185 (221)
T KOG3864|consen 175 LKNLRRLHLYD 185 (221)
T ss_pred hhhhHHHHhcC
Confidence 77777776654
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=72.60 E-value=1.6 Score=37.54 Aligned_cols=12 Identities=50% Similarity=0.559 Sum_probs=6.3
Q ss_pred CCCCCEEeccCC
Q 048732 128 LKNLKFLDLTLN 139 (174)
Q Consensus 128 l~~L~~L~ls~N 139 (174)
.|+|+.|+|++|
T Consensus 243 apklk~L~LS~N 254 (585)
T KOG3763|consen 243 APKLKTLDLSHN 254 (585)
T ss_pred cchhheeecccc
Confidence 345555555555
No 83
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=70.31 E-value=0.23 Score=42.23 Aligned_cols=91 Identities=24% Similarity=0.190 Sum_probs=46.0
Q ss_pred EEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCC-CCCCEEeccCCCCCCc----ccccc
Q 048732 75 VIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSL-KNLKFLDLTLNHFNNS----IFSSL 149 (174)
Q Consensus 75 v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l-~~L~~L~ls~N~l~g~----~p~~l 149 (174)
+..+.|.+|.+..+....-...+...++|+.|++++|.+...--......+... ..|++|++..+.+++. +.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 556667777666443323334456667777777777777622100011112232 3455555555555432 33344
Q ss_pred CCCCCCCEEEccCCcc
Q 048732 150 GGLSSLKHLSLGTNEL 165 (174)
Q Consensus 150 ~~l~~L~~L~Ls~N~l 165 (174)
.....++.++++.|.+
T Consensus 169 ~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccchhHHHHHhccc
Confidence 4455566666665554
No 84
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=60.00 E-value=7.8 Score=25.48 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=9.1
Q ss_pred CCcchHHHHHHHHHHHHHhhc
Q 048732 1 MCGSKRVWVSELIFILLAVKG 21 (174)
Q Consensus 1 m~~~~~~~~~~l~~~~~~~~~ 21 (174)
|++....++.+++++++++++
T Consensus 1 MaSK~~llL~l~LA~lLlisS 21 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISS 21 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHh
Confidence 674443333333334444443
No 85
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=59.39 E-value=0.22 Score=42.31 Aligned_cols=43 Identities=23% Similarity=0.317 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCCCCCccccCcccc----cCCCCCCEEeCcCCccc
Q 048732 72 TGRVIKLDLAFRKRDSAEWYMNASLF----TPFQQLEFLDLSGNNIT 114 (174)
Q Consensus 72 ~~~v~~L~L~~n~~~~g~~~~~~~~~----~~l~~L~~L~ls~N~l~ 114 (174)
..+++.+|++.|.+........+..+ ....+++.|.++++.++
T Consensus 171 ~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 171 NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 35677777777766421111112222 24556666677666655
No 86
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=56.32 E-value=8.4 Score=39.48 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=28.6
Q ss_pred EcCCCCCCCCccccCcccccCCCCCCEEeCcCCccc
Q 048732 79 DLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNIT 114 (174)
Q Consensus 79 ~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~ 114 (174)
||++|+|. .+++..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~Ls----tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS----TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC----ccChHHhccCCCceEEEeeCCccc
Confidence 68899888 788888999999999999999886
No 87
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=56.26 E-value=7.2 Score=39.91 Aligned_cols=31 Identities=35% Similarity=0.475 Sum_probs=20.2
Q ss_pred eCcCCccccccCcchhhhcCCCCCCCEEeccCCCC
Q 048732 107 DLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHF 141 (174)
Q Consensus 107 ~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l 141 (174)
||++|+|+ .+|... |..+++|+.|+|++|.+
T Consensus 1 DLSnN~Ls-tLp~g~---F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISNNKIS-TIEEGI---CANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCCcCC-ccChHH---hccCCCceEEEeeCCcc
Confidence 46677776 455443 66677777777777766
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=55.47 E-value=5.2 Score=34.60 Aligned_cols=68 Identities=25% Similarity=0.226 Sum_probs=42.4
Q ss_pred CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCC--ccccccCcchhhhcCCCCCCCEEeccCCCCCCcc
Q 048732 72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGN--NITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSI 145 (174)
Q Consensus 72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N--~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~ 145 (174)
.+.|..++|++|++..=. -....-...++|+.|+|++| .+.. .++. .-++. ..|+.|.+.+|.+...+
T Consensus 217 ~p~i~sl~lsnNrL~~Ld--~~sslsq~apklk~L~LS~N~~~~~~-~~el--~K~k~-l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLD--ALSSLSQIAPKLKTLDLSHNHSKISS-ESEL--DKLKG-LPLEELVLEGNPLCTTF 286 (585)
T ss_pred Ccceeeeecccchhhchh--hhhHHHHhcchhheeecccchhhhcc-hhhh--hhhcC-CCHHHeeecCCccccch
Confidence 467999999999886210 00122345689999999999 3321 1110 00333 34889999999987543
No 89
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=40.22 E-value=22 Score=16.84 Aligned_cols=11 Identities=45% Similarity=0.425 Sum_probs=6.0
Q ss_pred CCCCEEeccCC
Q 048732 129 KNLKFLDLTLN 139 (174)
Q Consensus 129 ~~L~~L~ls~N 139 (174)
++|+.|+++++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 44555555554
No 90
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=24.34 E-value=45 Score=27.48 Aligned_cols=63 Identities=32% Similarity=0.398 Sum_probs=32.9
Q ss_pred cCCCCCCEEeCcCCc-cccccCcchhhhc-CCCCCCCEEeccCCC-CCCc-cccccCCCCCCCEEEccCCc
Q 048732 98 TPFQQLEFLDLSGNN-ITGCVQNEGLDRL-SSLKNLKFLDLTLNH-FNNS-IFSSLGGLSSLKHLSLGTNE 164 (174)
Q Consensus 98 ~~l~~L~~L~ls~N~-l~g~~p~~~~~~~-~~l~~L~~L~ls~N~-l~g~-~p~~l~~l~~L~~L~Ls~N~ 164 (174)
..+.+|+.+++++.. ++ .. ....+ ..+++|+.|.+.... ++.. +-.....+++|++|+++.+.
T Consensus 240 ~~~~~L~~l~l~~~~~is-d~---~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVT-DI---GLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hhcCCcCccchhhhhccC-ch---hHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 345666777777665 22 11 10112 236777777755544 3322 11223456778888887654
No 91
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=20.07 E-value=33 Score=16.82 Aligned_cols=13 Identities=31% Similarity=0.327 Sum_probs=8.7
Q ss_pred cCCCCCCCEEecc
Q 048732 125 LSSLKNLKFLDLT 137 (174)
Q Consensus 125 ~~~l~~L~~L~ls 137 (174)
+..+|+|+.||..
T Consensus 9 i~~LPqL~~LD~~ 21 (26)
T smart00446 9 IRLLPQLRKLDXX 21 (26)
T ss_pred HHHCCccceeccc
Confidence 5567777777754
Done!