Query 048732
Match_columns 174
No_of_seqs 201 out of 2885
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 21:55:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048732.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048732hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.9 2.5E-23 8.4E-28 164.2 10.1 136 26-170 2-142 (313)
2 3rgz_A Protein brassinosteroid 99.8 6.7E-21 2.3E-25 166.2 9.3 136 25-170 7-168 (768)
3 4eco_A Uncharacterized protein 99.8 4.5E-20 1.5E-24 158.1 10.8 131 28-171 28-267 (636)
4 4ecn_A Leucine-rich repeat pro 99.8 4.3E-19 1.5E-23 156.8 9.8 133 26-171 265-509 (876)
5 4fcg_A Uncharacterized protein 99.7 3.2E-18 1.1E-22 135.8 3.0 139 23-172 20-169 (328)
6 1w8a_A SLIT protein; signaling 99.7 6.4E-16 2.2E-20 113.6 10.7 103 61-171 8-120 (192)
7 3g39_A Variable lymphocyte rec 99.6 1.4E-15 4.7E-20 109.9 10.9 101 61-169 9-118 (170)
8 3e6j_A Variable lymphocyte rec 99.6 2.3E-15 8E-20 113.5 11.4 104 58-170 16-128 (229)
9 2o6r_A Variable lymphocyte rec 99.6 5.1E-15 1.7E-19 107.1 11.4 102 61-171 7-117 (177)
10 3rgz_A Protein brassinosteroid 99.6 4.8E-16 1.6E-20 135.6 7.0 94 73-174 632-725 (768)
11 2v9t_B SLIT homolog 2 protein 99.6 6.4E-15 2.2E-19 110.5 11.5 99 61-167 11-118 (220)
12 2o6s_A Variable lymphocyte rec 99.6 8.3E-15 2.8E-19 108.5 11.5 100 60-167 6-114 (208)
13 2wfh_A SLIT homolog 2 protein 99.6 1.8E-14 6E-19 106.1 11.0 101 61-171 10-119 (193)
14 2v70_A SLIT-2, SLIT homolog 2 99.6 2E-14 6.7E-19 107.9 11.0 71 96-170 76-146 (220)
15 1w8a_A SLIT protein; signaling 99.5 1.8E-14 6.3E-19 105.8 8.8 91 72-170 53-143 (192)
16 2r9u_A Variable lymphocyte rec 99.5 5.2E-14 1.8E-18 102.0 10.9 100 61-168 12-120 (174)
17 2v70_A SLIT-2, SLIT homolog 2 99.5 5.8E-14 2E-18 105.3 9.9 102 61-170 11-122 (220)
18 2ifg_A High affinity nerve gro 99.5 9.4E-14 3.2E-18 110.2 10.5 98 61-167 8-117 (347)
19 3m19_A Variable lymphocyte rec 99.5 1.4E-13 4.9E-18 104.7 10.1 85 74-166 36-120 (251)
20 2o6q_A Variable lymphocyte rec 99.5 2.2E-13 7.5E-18 104.8 10.9 85 74-166 38-122 (270)
21 4g8a_A TOLL-like receptor 4; l 99.5 1.5E-13 5.1E-18 115.9 10.7 88 72-167 51-138 (635)
22 3v47_A TOLL-like receptor 5B a 99.5 1.1E-13 3.9E-18 113.1 8.5 104 59-169 6-119 (455)
23 2v9t_B SLIT homolog 2 protein 99.5 2.9E-13 9.8E-18 101.4 10.0 90 73-170 56-145 (220)
24 2z80_A TOLL-like receptor 2, v 99.5 2E-13 6.9E-18 108.6 9.7 104 58-171 27-141 (353)
25 2z81_A CD282 antigen, TOLL-lik 99.5 1.9E-13 6.7E-18 114.2 9.8 99 60-167 3-112 (549)
26 2xot_A Amphoterin-induced prot 99.5 3.6E-13 1.2E-17 107.8 10.8 99 61-167 18-126 (361)
27 2o6r_A Variable lymphocyte rec 99.4 2.8E-13 9.6E-18 97.8 8.4 90 73-170 52-141 (177)
28 1ogq_A PGIP-2, polygalacturona 99.4 1.6E-13 5.4E-18 107.9 5.9 90 75-173 199-288 (313)
29 2wfh_A SLIT homolog 2 protein 99.4 8.1E-13 2.8E-17 97.2 9.4 87 73-167 54-140 (193)
30 3e6j_A Variable lymphocyte rec 99.4 1E-12 3.4E-17 99.0 9.6 86 73-167 64-149 (229)
31 2o6s_A Variable lymphocyte rec 99.4 1.2E-12 4.2E-17 96.7 9.9 89 74-170 77-165 (208)
32 3m19_A Variable lymphocyte rec 99.4 1.3E-12 4.5E-17 99.4 10.2 86 74-167 84-169 (251)
33 4fcg_A Uncharacterized protein 99.4 5.7E-13 1.9E-17 105.5 8.2 89 74-171 207-295 (328)
34 2id5_A Lingo-1, leucine rich r 99.4 1.8E-12 6.3E-17 106.8 11.3 100 63-170 13-121 (477)
35 3vq2_A TLR4, TOLL-like recepto 99.4 2.3E-12 7.7E-17 109.0 10.9 87 73-167 32-118 (606)
36 1ozn_A Reticulon 4 receptor; N 99.4 4.5E-12 1.6E-16 97.8 11.4 86 73-166 32-118 (285)
37 3rfs_A Internalin B, repeat mo 99.4 2.5E-12 8.7E-17 99.0 9.9 87 73-167 109-195 (272)
38 3zyj_A Leucine-rich repeat-con 99.4 3.6E-12 1.2E-16 104.3 11.2 97 63-167 45-150 (440)
39 3zyi_A Leucine-rich repeat-con 99.4 3.6E-12 1.2E-16 104.7 11.1 100 63-171 56-164 (452)
40 3g39_A Variable lymphocyte rec 99.4 4.2E-12 1.4E-16 91.5 10.1 84 76-170 12-95 (170)
41 2xwt_C Thyrotropin receptor; s 99.4 1.3E-12 4.3E-17 98.6 7.5 91 72-171 30-122 (239)
42 3rfs_A Internalin B, repeat mo 99.4 4.3E-12 1.5E-16 97.7 10.4 91 72-170 84-174 (272)
43 2z66_A Variable lymphocyte rec 99.4 1.1E-12 3.8E-17 102.2 6.8 97 61-166 7-114 (306)
44 2xot_A Amphoterin-induced prot 99.3 2.4E-12 8.2E-17 103.0 8.8 87 73-167 64-150 (361)
45 2je0_A Acidic leucine-rich nuc 99.3 1.1E-12 3.7E-17 92.1 5.8 88 72-169 41-129 (149)
46 4g8a_A TOLL-like receptor 4; l 99.3 2.9E-12 9.8E-17 108.1 9.2 87 73-167 76-162 (635)
47 2r9u_A Variable lymphocyte rec 99.3 5.6E-12 1.9E-16 91.2 9.5 84 76-171 15-98 (174)
48 2z62_A TOLL-like receptor 4, v 99.3 7.2E-12 2.5E-16 96.3 10.7 86 74-167 29-114 (276)
49 3j0a_A TOLL-like receptor 5; m 99.3 2.3E-12 7.9E-17 113.4 8.8 101 62-171 15-115 (844)
50 2je0_A Acidic leucine-rich nuc 99.3 1.8E-12 6.1E-17 90.9 6.6 86 73-167 17-102 (149)
51 3v47_A TOLL-like receptor 5B a 99.3 3.8E-12 1.3E-16 104.0 9.4 89 74-170 324-412 (455)
52 1p9a_G Platelet glycoprotein I 99.3 7.2E-12 2.5E-16 97.5 10.2 89 74-171 101-189 (290)
53 2ifg_A High affinity nerve gro 99.3 5.1E-12 1.8E-16 100.2 8.8 84 77-171 12-97 (347)
54 3t6q_A CD180 antigen; protein- 99.3 8.6E-12 2.9E-16 105.4 9.7 87 73-167 33-119 (606)
55 1dce_A Protein (RAB geranylger 99.3 6.6E-12 2.3E-16 106.4 9.0 88 73-171 463-551 (567)
56 2ell_A Acidic leucine-rich nuc 99.3 2.3E-12 8E-17 92.1 5.3 86 73-168 49-135 (168)
57 1ozn_A Reticulon 4 receptor; N 99.3 1.4E-11 4.7E-16 95.1 9.6 42 125-166 173-214 (285)
58 4ay9_X Follicle-stimulating ho 99.3 6.2E-12 2.1E-16 100.2 7.6 101 61-168 9-119 (350)
59 2o6q_A Variable lymphocyte rec 99.3 2E-11 6.8E-16 93.8 10.1 69 95-167 103-171 (270)
60 2ell_A Acidic leucine-rich nuc 99.3 5.6E-12 1.9E-16 90.1 6.5 93 72-173 70-166 (168)
61 3vq2_A TLR4, TOLL-like recepto 99.3 1.3E-11 4.3E-16 104.4 9.6 71 94-168 97-168 (606)
62 2ft3_A Biglycan; proteoglycan, 99.3 2.3E-11 7.7E-16 95.9 10.4 95 61-166 33-136 (332)
63 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 1.7E-11 5.9E-16 103.1 9.9 84 73-167 52-135 (562)
64 2z66_A Variable lymphocyte rec 99.3 1.4E-11 4.7E-16 96.0 8.5 72 95-170 169-240 (306)
65 2z62_A TOLL-like receptor 4, v 99.3 2.3E-11 7.8E-16 93.5 9.6 86 74-167 77-163 (276)
66 4b8c_D Glucose-repressible alc 99.3 1.4E-12 4.8E-17 113.4 3.0 86 74-171 225-310 (727)
67 1p9a_G Platelet glycoprotein I 99.3 4.7E-11 1.6E-15 92.9 11.2 90 72-171 76-165 (290)
68 1xku_A Decorin; proteoglycan, 99.2 3.8E-11 1.3E-15 94.5 9.9 96 60-166 30-134 (330)
69 1a9n_A U2A', U2A'; complex (nu 99.2 1.6E-11 5.3E-16 88.6 7.0 87 73-171 42-130 (176)
70 4b8c_D Glucose-repressible alc 99.2 3.8E-12 1.3E-16 110.7 4.3 88 73-171 247-334 (727)
71 3oja_B Anopheles plasmodium-re 99.2 3.7E-11 1.2E-15 102.0 10.0 89 74-170 76-164 (597)
72 3t6q_A CD180 antigen; protein- 99.2 4E-11 1.4E-15 101.3 10.1 91 73-171 57-148 (606)
73 1ziw_A TOLL-like receptor 3; i 99.2 2.2E-11 7.6E-16 104.3 8.5 94 73-170 25-138 (680)
74 1dce_A Protein (RAB geranylger 99.2 1.6E-11 5.6E-16 104.0 7.5 85 74-171 442-527 (567)
75 3o6n_A APL1; leucine-rich repe 99.2 5.1E-11 1.7E-15 95.8 10.0 86 74-167 70-155 (390)
76 2z81_A CD282 antigen, TOLL-lik 99.2 2E-11 6.8E-16 102.0 7.8 91 73-171 50-141 (549)
77 2z7x_B TOLL-like receptor 1, v 99.2 1.6E-11 5.4E-16 102.1 6.9 84 73-167 21-104 (520)
78 2id5_A Lingo-1, leucine rich r 99.2 4.5E-11 1.6E-15 98.4 9.2 87 73-167 56-142 (477)
79 2z63_A TOLL-like receptor 4, v 99.2 3E-11 1E-15 101.1 8.2 91 74-171 446-536 (570)
80 4ezg_A Putative uncharacterize 99.2 2.6E-11 8.9E-16 89.0 6.9 86 73-167 88-173 (197)
81 1xku_A Decorin; proteoglycan, 99.2 5E-11 1.7E-15 93.8 8.7 88 73-170 192-279 (330)
82 4eco_A Uncharacterized protein 99.2 5.1E-11 1.8E-15 102.0 8.9 88 74-172 489-584 (636)
83 4ezg_A Putative uncharacterize 99.2 4.2E-11 1.4E-15 87.8 7.2 88 73-170 66-153 (197)
84 3oja_B Anopheles plasmodium-re 99.2 7.2E-11 2.4E-15 100.2 9.6 87 73-167 99-185 (597)
85 2z7x_B TOLL-like receptor 1, v 99.2 4.7E-11 1.6E-15 99.3 8.1 92 72-171 323-417 (520)
86 2z63_A TOLL-like receptor 4, v 99.2 7.1E-11 2.4E-15 98.8 9.3 86 74-167 53-138 (570)
87 3o6n_A APL1; leucine-rich repe 99.2 9.7E-11 3.3E-15 94.1 9.6 88 72-167 92-179 (390)
88 1ziw_A TOLL-like receptor 3; i 99.2 7.8E-11 2.7E-15 100.9 9.3 90 73-170 73-162 (680)
89 1wwl_A Monocyte differentiatio 99.2 9.8E-12 3.4E-16 97.4 3.4 85 74-167 96-187 (312)
90 1a9n_A U2A', U2A'; complex (nu 99.2 5.7E-11 2E-15 85.6 7.0 87 72-171 18-105 (176)
91 3zyj_A Leucine-rich repeat-con 99.2 9.7E-11 3.3E-15 95.8 9.1 85 73-167 185-269 (440)
92 2ft3_A Biglycan; proteoglycan, 99.1 4.4E-11 1.5E-15 94.3 6.3 86 73-167 193-278 (332)
93 3zyi_A Leucine-rich repeat-con 99.1 1.3E-10 4.3E-15 95.4 9.0 82 73-162 99-180 (452)
94 1wwl_A Monocyte differentiatio 99.1 4E-11 1.4E-15 93.9 5.5 40 73-116 149-188 (312)
95 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 1.2E-10 4.2E-15 97.9 8.6 91 72-170 352-445 (562)
96 3oja_A Leucine-rich immune mol 99.1 1.1E-10 3.8E-15 97.0 8.1 43 127-171 189-231 (487)
97 3j0a_A TOLL-like receptor 5; m 99.1 1.3E-10 4.4E-15 102.3 8.9 87 74-167 49-137 (844)
98 4ecn_A Leucine-rich repeat pro 99.1 1.4E-10 4.8E-15 102.7 8.8 88 74-172 729-824 (876)
99 2z80_A TOLL-like receptor 2, v 99.1 1.7E-10 5.7E-15 91.7 7.8 83 73-164 76-160 (353)
100 4glp_A Monocyte differentiatio 99.1 1.2E-10 4.1E-15 91.0 6.8 90 74-167 92-183 (310)
101 2xwt_C Thyrotropin receptor; s 99.1 1.2E-10 4.1E-15 87.7 6.1 84 73-166 55-144 (239)
102 4glp_A Monocyte differentiatio 99.1 7.2E-11 2.5E-15 92.3 4.7 94 73-171 145-268 (310)
103 3oja_A Leucine-rich immune mol 99.1 3.7E-10 1.3E-14 93.9 8.4 96 62-168 110-206 (487)
104 3cvr_A Invasion plasmid antige 99.0 1.8E-10 6.2E-15 97.7 5.6 89 58-167 40-134 (571)
105 3o53_A Protein LRIM1, AGAP0063 99.0 9.4E-10 3.2E-14 86.3 8.3 61 99-166 167-227 (317)
106 3o53_A Protein LRIM1, AGAP0063 99.0 5.4E-10 1.8E-14 87.7 6.4 85 73-169 169-254 (317)
107 4fmz_A Internalin; leucine ric 99.0 7.2E-10 2.5E-14 87.5 7.0 86 73-170 243-328 (347)
108 4fmz_A Internalin; leucine ric 99.0 6.3E-10 2.1E-14 87.8 5.7 83 72-166 264-346 (347)
109 1h6t_A Internalin B; cell adhe 99.0 2E-09 6.7E-14 83.7 8.3 63 97-167 130-192 (291)
110 1h6u_A Internalin H; cell adhe 99.0 2.2E-09 7.7E-14 84.0 8.6 80 73-166 63-142 (308)
111 1xeu_A Internalin C; cellular 98.9 3.3E-09 1.1E-13 81.3 8.9 86 73-167 63-164 (263)
112 1h6u_A Internalin H; cell adhe 98.9 2.2E-09 7.4E-14 84.0 8.0 36 73-114 107-142 (308)
113 1h6t_A Internalin B; cell adhe 98.9 3E-09 1E-13 82.6 8.2 64 97-168 108-171 (291)
114 1m9s_A Internalin B; cell inva 98.9 3.6E-09 1.2E-13 90.3 8.7 63 97-167 127-189 (605)
115 1m9s_A Internalin B; cell inva 98.9 5.8E-09 2E-13 89.0 8.1 83 74-170 88-170 (605)
116 1xeu_A Internalin C; cellular 98.8 8.1E-09 2.8E-13 79.1 8.1 82 73-167 41-142 (263)
117 1o6v_A Internalin A; bacterial 98.8 5.1E-09 1.7E-13 86.1 7.4 41 125-167 349-389 (466)
118 3bz5_A Internalin-J, INLJ; leu 98.8 1E-08 3.5E-13 84.6 9.0 80 73-170 64-143 (457)
119 1jl5_A Outer protein YOPM; leu 98.8 1.8E-08 6.2E-13 83.0 9.4 82 73-171 131-212 (454)
120 3bz5_A Internalin-J, INLJ; leu 98.8 2E-08 6.8E-13 82.8 9.5 77 74-167 171-247 (457)
121 1o6v_A Internalin A; bacterial 98.8 1.1E-08 3.7E-13 84.2 7.9 63 97-167 261-323 (466)
122 3g06_A SSPH2 (leucine-rich rep 98.8 8.4E-09 2.9E-13 88.3 7.1 63 99-170 239-301 (622)
123 2ast_B S-phase kinase-associat 98.8 4.9E-10 1.7E-14 88.0 -0.7 86 73-167 70-157 (336)
124 3cvr_A Invasion plasmid antige 98.8 6.2E-09 2.1E-13 88.3 5.9 38 132-170 210-247 (571)
125 1jl5_A Outer protein YOPM; leu 98.8 7.5E-09 2.6E-13 85.3 6.2 65 100-172 336-417 (454)
126 2ast_B S-phase kinase-associat 98.7 4.9E-09 1.7E-13 82.2 3.5 88 73-167 93-183 (336)
127 3rw6_A Nuclear RNA export fact 98.7 1.2E-08 3.9E-13 78.8 5.4 67 99-171 168-238 (267)
128 2ca6_A RAN GTPase-activating p 98.7 1.9E-09 6.4E-14 86.6 0.9 68 96-167 211-288 (386)
129 2ca6_A RAN GTPase-activating p 98.7 2.7E-09 9.1E-14 85.7 1.6 94 73-166 32-135 (386)
130 3goz_A Leucine-rich repeat-con 98.7 1.5E-09 5E-14 86.7 -0.1 90 74-167 52-152 (362)
131 1ds9_A Outer arm dynein; leuci 98.7 9.2E-11 3.2E-15 86.1 -7.4 92 73-171 48-158 (198)
132 1ds9_A Outer arm dynein; leuci 98.6 2.3E-10 7.8E-15 84.0 -6.3 65 96-167 43-107 (198)
133 3g06_A SSPH2 (leucine-rich rep 98.6 1.7E-08 5.8E-13 86.4 3.9 55 100-166 80-134 (622)
134 1z7x_W Ribonuclease inhibitor; 98.5 1E-08 3.5E-13 83.6 0.3 94 74-167 314-412 (461)
135 3goz_A Leucine-rich repeat-con 98.5 3.3E-08 1.1E-12 78.8 1.9 93 72-168 21-124 (362)
136 1z7x_W Ribonuclease inhibitor; 98.4 2.2E-08 7.5E-13 81.7 -0.3 88 73-167 56-156 (461)
137 3sb4_A Hypothetical leucine ri 98.4 4.8E-07 1.6E-11 71.1 7.4 88 73-171 226-314 (329)
138 3un9_A NLR family member X1; l 98.4 2E-08 6.8E-13 80.9 -0.8 69 98-166 180-252 (372)
139 4ay9_X Follicle-stimulating ho 98.4 5.9E-07 2E-11 71.2 6.3 65 73-144 54-119 (350)
140 1io0_A Tropomodulin; LRR prote 98.3 9.5E-08 3.3E-12 69.5 1.3 94 73-166 65-164 (185)
141 3rw6_A Nuclear RNA export fact 98.3 1.8E-07 6E-12 72.2 2.8 81 73-159 170-257 (267)
142 3un9_A NLR family member X1; l 98.3 3E-07 1E-11 74.0 2.5 69 99-167 153-225 (372)
143 1io0_A Tropomodulin; LRR prote 98.2 1.4E-07 4.9E-12 68.5 -0.8 96 72-167 35-137 (185)
144 3ogk_B Coronatine-insensitive 98.0 7.2E-07 2.5E-11 74.9 -0.5 66 99-168 461-528 (592)
145 3sb4_A Hypothetical leucine ri 97.7 5.7E-05 2E-09 59.1 6.7 78 73-160 250-328 (329)
146 3rfe_A Platelet glycoprotein I 97.7 7.5E-05 2.6E-09 51.1 6.5 38 101-142 31-68 (130)
147 3ogk_B Coronatine-insensitive 97.7 1.4E-06 4.7E-11 73.1 -3.2 65 99-167 162-234 (592)
148 3e4g_A ATP synthase subunit S, 97.7 1.5E-05 5.2E-10 57.6 2.6 84 73-164 61-150 (176)
149 2p1m_B Transport inhibitor res 97.6 5.4E-06 1.9E-10 69.4 -1.2 64 100-166 455-519 (594)
150 2p1m_B Transport inhibitor res 97.4 2.1E-05 7.1E-10 65.9 0.3 84 73-164 105-195 (594)
151 2ra8_A Uncharacterized protein 97.3 3.5E-05 1.2E-09 61.7 -0.4 66 100-166 251-320 (362)
152 1pgv_A TMD-1, tropomodulin TMD 97.2 0.0001 3.6E-09 54.1 1.7 91 73-163 41-136 (197)
153 4fdw_A Leucine rich hypothetic 96.8 0.0048 1.6E-07 49.8 8.4 68 92-166 291-358 (401)
154 4fdw_A Leucine rich hypothetic 96.8 0.0027 9.3E-08 51.3 6.6 69 91-163 261-333 (401)
155 2ra8_A Uncharacterized protein 96.6 0.0005 1.7E-08 54.9 0.8 41 127-167 250-293 (362)
156 4fs7_A Uncharacterized protein 96.4 0.0085 2.9E-07 47.8 7.1 79 74-163 298-376 (394)
157 3rfe_A Platelet glycoprotein I 96.3 0.0041 1.4E-07 42.3 4.0 37 74-114 32-68 (130)
158 3e4g_A ATP synthase subunit S, 96.3 0.0022 7.4E-08 46.2 2.6 62 101-166 61-128 (176)
159 1pgv_A TMD-1, tropomodulin TMD 96.1 0.0024 8.2E-08 46.8 2.2 71 97-167 37-112 (197)
160 4gt6_A Cell surface protein; l 95.9 0.034 1.2E-06 44.3 8.5 67 92-164 302-368 (394)
161 4h09_A Hypothetical leucine ri 95.9 0.016 5.6E-07 45.7 6.4 66 93-163 278-343 (379)
162 4h09_A Hypothetical leucine ri 94.8 0.11 3.7E-06 40.9 7.9 67 92-163 254-320 (379)
163 4gt6_A Cell surface protein; l 94.5 0.15 5.1E-06 40.5 8.1 66 92-163 279-344 (394)
164 4fs7_A Uncharacterized protein 91.1 0.45 1.5E-05 37.7 6.1 64 94-163 290-353 (394)
165 2lz0_A Uncharacterized protein 45.7 42 0.0014 21.0 4.8 44 91-139 10-53 (100)
166 3ox7_P MH027; urokinase-type p 24.1 18 0.00061 15.9 0.1 9 59-67 6-14 (23)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=2.5e-23 Score=164.18 Aligned_cols=136 Identities=30% Similarity=0.522 Sum_probs=93.5
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCcc--ccceEecCCC--CcEEEEEcCCCCCCCCccccCcccccCCC
Q 048732 26 GCLEQERSALLQLKHFFNDSKHLHYWNDGENYSDCCQ--WEGVECNNTT--GRVIKLDLAFRKRDSAEWYMNASLFTPFQ 101 (174)
Q Consensus 26 ~~~~~~~~~L~~~~~~~~~~~~~~~W~~~~~~~~~C~--w~gv~c~~~~--~~v~~L~L~~n~~~~g~~~~~~~~~~~l~ 101 (174)
.|.++|.++|++||+++.++....+|..+ .++|. |.||.|+... ++|++|+|++|++. +.. ..+..+..++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~---~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~-~~~-~~~~~l~~l~ 76 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWLPT---TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP-KPY-PIPSSLANLP 76 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCCTT---SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCS-SCE-ECCGGGGGCT
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCCCCC---CCCCcCCCcceEeCCCCCCceEEEEECCCCCcc-CCc-ccChhHhCCC
Confidence 58889999999999999877645899764 68898 9999998644 79999999999886 310 1244566677
Q ss_pred CCCEEeCcC-CccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCC
Q 048732 102 QLEFLDLSG-NNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSID 170 (174)
Q Consensus 102 ~L~~L~ls~-N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP 170 (174)
+|++|++++ |.+.+.+|.. ++.+++|++|++++|.+++.+|..|+.+++|++|++++|+++|.+|
T Consensus 77 ~L~~L~L~~~n~l~~~~p~~----l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 142 (313)
T 1ogq_A 77 YLNFLYIGGINNLVGPIPPA----IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142 (313)
T ss_dssp TCSEEEEEEETTEESCCCGG----GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCC
T ss_pred CCCeeeCCCCCcccccCChh----HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCC
Confidence 777777773 6666666655 5555555555555555555555555555555555555555555444
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.83 E-value=6.7e-21 Score=166.21 Aligned_cols=136 Identities=29% Similarity=0.423 Sum_probs=105.2
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCccccceEecCCCCcEEEEEcCCCCCCCCccc-cC----------
Q 048732 25 EGCLEQERSALLQLKHFFNDSKHLHYWNDGENYSDCCQWEGVECNNTTGRVIKLDLAFRKRDSAEWY-MN---------- 93 (174)
Q Consensus 25 ~~~~~~~~~~L~~~~~~~~~~~~~~~W~~~~~~~~~C~w~gv~c~~~~~~v~~L~L~~n~~~~g~~~-~~---------- 93 (174)
....++|++||++||+.+.+|..+.+|..+ .+||.|.||+|+ .++|+.|+|+++.+. |.+. ++
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~~l~~W~~~---~~~C~w~gv~C~--~~~v~~L~L~~~~l~-g~~~~l~~~l~~L~~L~ 80 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKNLLPDWSSN---KNPCTFDGVTCR--DDKVTSIDLSSKPLN-VGFSAVSSSLLSLTGLE 80 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTTSSTTCCTT---SCGGGSTTEEEE--TTEEEEEECTTSCCC-EEHHHHHHHTTTCTTCC
T ss_pred ccCCHHHHHHHHHHHhhCCCcccccCCCCC---CCCcCCcceEEC--CCcEEEEECCCCCcC-CccCccChhHhccCccc
Confidence 344678999999999999988734999863 789999999998 489999999998775 3200 11
Q ss_pred ------------cccccCCCCCCEEeCcCCccccccCc--chhhhcCCCCCCCEEeccCCCCCCcccccc-CCCCCCCEE
Q 048732 94 ------------ASLFTPFQQLEFLDLSGNNITGCVQN--EGLDRLSSLKNLKFLDLTLNHFNNSIFSSL-GGLSSLKHL 158 (174)
Q Consensus 94 ------------~~~~~~l~~L~~L~ls~N~l~g~~p~--~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l-~~l~~L~~L 158 (174)
+..+..+++|++|++++|.+.|.+|. . ++++++|++|++++|.+++.+|..+ ..+++|++|
T Consensus 81 ~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 156 (768)
T 3rgz_A 81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTS----LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156 (768)
T ss_dssp EEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGG----GGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEE
T ss_pred ccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHH----HhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEE
Confidence 14577888888888888888888876 5 7788888888888888877777655 677777777
Q ss_pred EccCCcccccCC
Q 048732 159 SLGTNELNGSID 170 (174)
Q Consensus 159 ~Ls~N~l~g~iP 170 (174)
++++|+++|.+|
T Consensus 157 ~Ls~n~l~~~~~ 168 (768)
T 3rgz_A 157 DLSANSISGANV 168 (768)
T ss_dssp ECCSSCCEEETH
T ss_pred ECCCCccCCcCC
Confidence 777777776554
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.82 E-value=4.5e-20 Score=158.14 Aligned_cols=131 Identities=20% Similarity=0.216 Sum_probs=105.8
Q ss_pred CHHHHHHHHHHHhhCCCCCCC---------CCCCCCCCCCCCccc---cceEecCCCCcEEEEEcCCCCCCCCccccCcc
Q 048732 28 LEQERSALLQLKHFFNDSKHL---------HYWNDGENYSDCCQW---EGVECNNTTGRVIKLDLAFRKRDSAEWYMNAS 95 (174)
Q Consensus 28 ~~~~~~~L~~~~~~~~~~~~~---------~~W~~~~~~~~~C~w---~gv~c~~~~~~v~~L~L~~n~~~~g~~~~~~~ 95 (174)
...|+.||.++++++.+++|. .+|+.+ .++|.| .||.|+. .++|+.|+|+++++. |.+ ++
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~---~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l~-g~l---p~ 99 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN---KELDMWGAQPGVSLNS-NGRVTGLSLEGFGAS-GRV---PD 99 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCS---SCGGGTTCCTTEEECT-TCCEEEEECTTSCCE-EEE---CG
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCC---CCcccccCCCCeEEcC-CCCEEEEEecCcccC-CcC---Ch
Confidence 346999999999999877654 269874 789999 9999987 489999999999876 443 56
Q ss_pred cccCCCCCCEEeCcCCcc--------------------------------------------------------------
Q 048732 96 LFTPFQQLEFLDLSGNNI-------------------------------------------------------------- 113 (174)
Q Consensus 96 ~~~~l~~L~~L~ls~N~l-------------------------------------------------------------- 113 (174)
.++.|++|+.|++++|.+
T Consensus 100 ~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 179 (636)
T 4eco_A 100 AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179 (636)
T ss_dssp GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCC
T ss_pred HHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccccc
Confidence 688888888888888743
Q ss_pred ----------------ccccCcchhhhcCCCCCCCEEeccCCCCCCc-----------------cccccC--CCCCCCEE
Q 048732 114 ----------------TGCVQNEGLDRLSSLKNLKFLDLTLNHFNNS-----------------IFSSLG--GLSSLKHL 158 (174)
Q Consensus 114 ----------------~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~-----------------~p~~l~--~l~~L~~L 158 (174)
+| +|.. ++++++|++|+|++|.++|. +|..++ .+++|++|
T Consensus 180 ~~~l~~l~l~~~~n~l~~-ip~~----l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L 254 (636)
T 4eco_A 180 RITLKDTQIGQLSNNITF-VSKA----VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDV 254 (636)
T ss_dssp CCCCCTTTTTCCSCEEEE-ECGG----GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred ccchhhhhhccccCCCcc-CCHH----HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEE
Confidence 34 6665 77888888888888888875 888888 88888888
Q ss_pred EccCCcccccCCC
Q 048732 159 SLGTNELNGSIDI 171 (174)
Q Consensus 159 ~Ls~N~l~g~iP~ 171 (174)
++++|++.|.+|.
T Consensus 255 ~L~~n~l~~~~p~ 267 (636)
T 4eco_A 255 EVYNCPNLTKLPT 267 (636)
T ss_dssp EEECCTTCSSCCT
T ss_pred EecCCcCCccChH
Confidence 8888888888885
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.78 E-value=4.3e-19 Score=156.79 Aligned_cols=133 Identities=17% Similarity=0.217 Sum_probs=103.9
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCCCCCCCCC--CCCCC--ccc------------cceEecCCCCcEEEEEcCCCCCCCCc
Q 048732 26 GCLEQERSALLQLKHFFNDSKHLHYWNDGE--NYSDC--CQW------------EGVECNNTTGRVIKLDLAFRKRDSAE 89 (174)
Q Consensus 26 ~~~~~~~~~L~~~~~~~~~~~~~~~W~~~~--~~~~~--C~w------------~gv~c~~~~~~v~~L~L~~n~~~~g~ 89 (174)
+....|..||++||+++.+| +|+.+. ...+| |.| .||.|+. .++|+.|+|+++++. |.
T Consensus 265 ~~~~~d~~ALl~~k~~l~~~----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~-G~ 338 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALDGK----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAK-GR 338 (876)
T ss_dssp CHHHHHHHHHHHHHHHTTGG----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCE-EE
T ss_pred ccchHHHHHHHHHHHHcCCC----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCC-Cc
Confidence 34567999999999999877 454431 00244 999 9999987 689999999999876 44
Q ss_pred cccCcccccCCCCCCEEeC-cCCccccc----------------------------------------------------
Q 048732 90 WYMNASLFTPFQQLEFLDL-SGNNITGC---------------------------------------------------- 116 (174)
Q Consensus 90 ~~~~~~~~~~l~~L~~L~l-s~N~l~g~---------------------------------------------------- 116 (174)
+ |+.+++|++|+.|++ ++|.+.|.
T Consensus 339 i---p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~ 415 (876)
T 4ecn_A 339 V---PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMK 415 (876)
T ss_dssp E---CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSC
T ss_pred C---chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccc
Confidence 3 566888999999999 77765554
Q ss_pred ------------------------cCcchhhhcCCCCCCCEEeccCCCCCC-----------------ccccccC--CCC
Q 048732 117 ------------------------VQNEGLDRLSSLKNLKFLDLTLNHFNN-----------------SIFSSLG--GLS 153 (174)
Q Consensus 117 ------------------------~p~~~~~~~~~l~~L~~L~ls~N~l~g-----------------~~p~~l~--~l~ 153 (174)
+|.. ++++++|++|+|++|.++| .+|..++ +++
T Consensus 416 ~i~~~~~l~l~~l~l~~~~N~L~~IP~~----l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~ 491 (876)
T 4ecn_A 416 PIKKDSRISLKDTQIGNLTNRITFISKA----IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK 491 (876)
T ss_dssp CCCCCCCCCCCTTTTTCCSCEEEEECGG----GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT
T ss_pred ccccccccchhhceeccccCcccchhHH----HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCC
Confidence 5555 7788888888888888887 3888877 888
Q ss_pred CCCEEEccCCcccccCCC
Q 048732 154 SLKHLSLGTNELNGSIDI 171 (174)
Q Consensus 154 ~L~~L~Ls~N~l~g~iP~ 171 (174)
+|++|+|++|++.|.+|.
T Consensus 492 ~L~~L~Ls~N~l~~~iP~ 509 (876)
T 4ecn_A 492 DLTDVELYNCPNMTQLPD 509 (876)
T ss_dssp TCCEEEEESCTTCCSCCG
T ss_pred CCCEEECcCCCCCccChH
Confidence 888888888888888884
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.70 E-value=3.2e-18 Score=135.79 Aligned_cols=139 Identities=15% Similarity=0.207 Sum_probs=111.1
Q ss_pred CCCCCCHHHHHHHHHHHhhCC-CCCCC-CCCCCC-CCCCCCccccceEecC--------CCCcEEEEEcCCCCCCCCccc
Q 048732 23 WSEGCLEQERSALLQLKHFFN-DSKHL-HYWNDG-ENYSDCCQWEGVECNN--------TTGRVIKLDLAFRKRDSAEWY 91 (174)
Q Consensus 23 ~~~~~~~~~~~~L~~~~~~~~-~~~~~-~~W~~~-~~~~~~C~w~gv~c~~--------~~~~v~~L~L~~n~~~~g~~~ 91 (174)
+..+....|..+|.+||+.+. ++... ..|... ....++|.|.|+.|.. ...+|+.|+|++|++. .
T Consensus 20 ~~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~----~ 95 (328)
T 4fcg_A 20 QGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP----Q 95 (328)
T ss_dssp C--CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS----S
T ss_pred eccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch----h
Confidence 344556678999999999884 55433 788410 0136889999999952 3478999999999887 4
Q ss_pred cCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCCC
Q 048732 92 MNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDI 171 (174)
Q Consensus 92 ~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP~ 171 (174)
++ ..+..+++|++|++++|.++ .+|.. ++.+++|++|++++|+++ .+|..++.+++|++|++++|++.|.+|.
T Consensus 96 lp-~~l~~l~~L~~L~L~~n~l~-~lp~~----~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~ 168 (328)
T 4fcg_A 96 FP-DQAFRLSHLQHMTIDAAGLM-ELPDT----MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPE 168 (328)
T ss_dssp CC-SCGGGGTTCSEEEEESSCCC-CCCSC----GGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCS
T ss_pred cC-hhhhhCCCCCEEECCCCCcc-chhHH----HhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccCh
Confidence 44 44777999999999999998 88887 889999999999999999 8899999999999999999998888886
Q ss_pred C
Q 048732 172 E 172 (174)
Q Consensus 172 ~ 172 (174)
.
T Consensus 169 ~ 169 (328)
T 4fcg_A 169 P 169 (328)
T ss_dssp C
T ss_pred h
Confidence 3
No 6
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=6.4e-16 Score=113.64 Aligned_cols=103 Identities=23% Similarity=0.303 Sum_probs=82.5
Q ss_pred ccccceEecCC---------CCcEEEEEcCCCCCCCCccccCcc-cccCCCCCCEEeCcCCccccccCcchhhhcCCCCC
Q 048732 61 CQWEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMNAS-LFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKN 130 (174)
Q Consensus 61 C~w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~~~-~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~ 130 (174)
|.|..+.|... ...++.|++++|++. .+++. .|..+++|++|++++|.+++..|.. |..+++
T Consensus 8 C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~ 79 (192)
T 1w8a_A 8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELG----RISSDGLFGRLPHLVKLELKRNQLTGIEPNA----FEGASH 79 (192)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCC----SBCCSCSGGGCTTCCEEECCSSCCCCBCTTT----TTTCTT
T ss_pred ECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCC----ccCCccccccCCCCCEEECCCCCCCCcCHhH----cCCccc
Confidence 78888888642 237889999999876 34443 4788889999999999988777776 888888
Q ss_pred CCEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCCC
Q 048732 131 LKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDI 171 (174)
Q Consensus 131 L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP~ 171 (174)
|++|+|++|++++..|..|..+++|++|+|++|+|++.+|.
T Consensus 80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 120 (192)
T 1w8a_A 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG 120 (192)
T ss_dssp CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH
Confidence 88888888888877777788888888888888888876664
No 7
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.64 E-value=1.4e-15 Score=109.91 Aligned_cols=101 Identities=24% Similarity=0.289 Sum_probs=87.2
Q ss_pred ccccceEecCC---------CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCC
Q 048732 61 CQWEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNL 131 (174)
Q Consensus 61 C~w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L 131 (174)
|.|..+.|... ...++.|+|++|++. .+++..|..+++|++|++++|++++..+.. |..+++|
T Consensus 9 C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~----~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~----f~~l~~L 80 (170)
T 3g39_A 9 CSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQIT----KLEPGVFDRLTQLTRLDLDNNQLTVLPAGV----FDKLTQL 80 (170)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCCCCTTT----TTTCTTC
T ss_pred cCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCC----ccChhhhcCcccCCEEECCCCCcCccChhh----ccCCCCC
Confidence 78888999652 357899999999988 566788999999999999999999655554 8899999
Q ss_pred CEEeccCCCCCCccccccCCCCCCCEEEccCCcccccC
Q 048732 132 KFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSI 169 (174)
Q Consensus 132 ~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~i 169 (174)
++|+|++|+|++..+..|..+++|++|+|++|++++..
T Consensus 81 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 81 TQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 99999999999776778999999999999999998653
No 8
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.63 E-value=2.3e-15 Score=113.51 Aligned_cols=104 Identities=22% Similarity=0.270 Sum_probs=71.3
Q ss_pred CCCccccceEecCC---------CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCC
Q 048732 58 SDCCQWEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSL 128 (174)
Q Consensus 58 ~~~C~w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l 128 (174)
...|.|.+|.|... ...++.|+|++|++. .+.+..|..+++|+.|++++|.+....+.. |..+
T Consensus 16 ~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~----~~~l 87 (229)
T 3e6j_A 16 QCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQIT----KLEPGVFDSLINLKELYLGSNQLGALPVGV----FDSL 87 (229)
T ss_dssp TCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTC
T ss_pred CCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccC----ccCHHHhhCccCCcEEECCCCCCCCcChhh----cccC
Confidence 57899999999752 346888999998877 344566777777777777777775333333 5667
Q ss_pred CCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCC
Q 048732 129 KNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSID 170 (174)
Q Consensus 129 ~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP 170 (174)
++|++|+|++|++++..+..|..+++|++|+|++|+|+ .||
T Consensus 88 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp 128 (229)
T 3e6j_A 88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELP 128 (229)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCC
T ss_pred CCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccC
Confidence 77777777777776555555666666666666666666 454
No 9
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=5.1e-15 Score=107.09 Aligned_cols=102 Identities=26% Similarity=0.382 Sum_probs=80.7
Q ss_pred ccccceEecCC---------CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCC
Q 048732 61 CQWEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNL 131 (174)
Q Consensus 61 C~w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L 131 (174)
|.|.++.|... ...++.|++++|++. .+++..|..+++|++|++++|.+++..+.. +..+++|
T Consensus 7 C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L 78 (177)
T 2o6r_A 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQ----SLPHGVFDKLTQLTKLSLSQNQIQSLPDGV----FDKLTKL 78 (177)
T ss_dssp EETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCCCCTTT----TTTCTTC
T ss_pred eCCCEEEecCCCCccCCCCCCCCCcEEEeCCCccc----EeCHHHhcCcccccEEECCCCcceEeChhH----ccCCCcc
Confidence 78999999652 247899999999877 455666788899999999999888544444 7788888
Q ss_pred CEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCCC
Q 048732 132 KFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDI 171 (174)
Q Consensus 132 ~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP~ 171 (174)
++|++++|++++..+..+..+++|++|++++|++++ +|.
T Consensus 79 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~ 117 (177)
T 2o6r_A 79 TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS-VPD 117 (177)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCT
T ss_pred CEEECCCCCccccCHHHhhCCcccCEEECcCCcceE-eCH
Confidence 888888888886666677888888888888888884 443
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.61 E-value=4.8e-16 Score=135.60 Aligned_cols=94 Identities=27% Similarity=0.476 Sum_probs=87.3
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
..++.|||++|++. |. .|..++.++.|+.|++++|.++|.+|.. ++.+++|++|||++|+++|.+|..++.+
T Consensus 632 ~~L~~LdLs~N~l~-g~---ip~~l~~l~~L~~L~Ls~N~l~g~ip~~----l~~L~~L~~LdLs~N~l~g~ip~~l~~l 703 (768)
T 3rgz_A 632 GSMMFLDMSYNMLS-GY---IPKEIGSMPYLFILNLGHNDISGSIPDE----VGDLRGLNILDLSSNKLDGRIPQAMSAL 703 (768)
T ss_dssp BCCCEEECCSSCCB-SC---CCGGGGGCTTCCEEECCSSCCCSCCCGG----GGGCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred ccccEEECcCCccc-cc---CCHHHhccccCCEEeCcCCccCCCCChH----HhCCCCCCEEECCCCcccCcCChHHhCC
Confidence 46889999999887 33 3777999999999999999999999998 9999999999999999999999999999
Q ss_pred CCCCEEEccCCcccccCCCCCC
Q 048732 153 SSLKHLSLGTNELNGSIDIEGE 174 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~g~iP~~~~ 174 (174)
++|++|++++|+++|.||..|+
T Consensus 704 ~~L~~L~ls~N~l~g~iP~~~~ 725 (768)
T 3rgz_A 704 TMLTEIDLSNNNLSGPIPEMGQ 725 (768)
T ss_dssp CCCSEEECCSSEEEEECCSSSS
T ss_pred CCCCEEECcCCcccccCCCchh
Confidence 9999999999999999998764
No 11
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.61 E-value=6.4e-15 Score=110.51 Aligned_cols=99 Identities=26% Similarity=0.400 Sum_probs=62.0
Q ss_pred ccccceEecCC---------CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCC
Q 048732 61 CQWEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNL 131 (174)
Q Consensus 61 C~w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L 131 (174)
|.|..+.|... ...++.|++++|++. .+++..|..+++|+.|++++|.+++..|.. |..+++|
T Consensus 11 C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~----~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~----~~~l~~L 82 (220)
T 2v9t_B 11 CSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIK----VIPPGAFSPYKKLRRIDLSNNQISELAPDA----FQGLRSL 82 (220)
T ss_dssp EETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCC----EECTTSSTTCTTCCEEECCSSCCCEECTTT----TTTCSSC
T ss_pred ECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCC----CcCHhHhhCCCCCCEEECCCCcCCCcCHHH----hhCCcCC
Confidence 77888888642 246788888888776 455556666777777777777776555554 5566666
Q ss_pred CEEeccCCCCCCccccccCCCCCCCEEEccCCcccc
Q 048732 132 KFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNG 167 (174)
Q Consensus 132 ~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g 167 (174)
++|+|++|+++...+..|..+++|++|+|++|+|++
T Consensus 83 ~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~ 118 (220)
T 2v9t_B 83 NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC 118 (220)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCE
Confidence 666666666653333344555555555555555554
No 12
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.60 E-value=8.3e-15 Score=108.49 Aligned_cols=100 Identities=26% Similarity=0.420 Sum_probs=64.2
Q ss_pred CccccceEecCC---------CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCC
Q 048732 60 CCQWEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKN 130 (174)
Q Consensus 60 ~C~w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~ 130 (174)
.|.|.++.|... ..+++.|++++|++. .+++..|..+++|++|++++|.+++..+.. |..+++
T Consensus 6 ~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~ 77 (208)
T 2o6s_A 6 SCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLK----SLPNGVFDELTSLTQLYLGGNKLQSLPNGV----FNKLTS 77 (208)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCCCCTTT----TTTCTT
T ss_pred EECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccC----cCChhhhcccccCcEEECCCCccCccChhh----cCCCCC
Confidence 388999999652 246888999988776 344555667777777777777776433333 556666
Q ss_pred CCEEeccCCCCCCccccccCCCCCCCEEEccCCcccc
Q 048732 131 LKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNG 167 (174)
Q Consensus 131 L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g 167 (174)
|++|++++|++++..+..|..+++|++|++++|++++
T Consensus 78 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 114 (208)
T 2o6s_A 78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS 114 (208)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred cCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcc
Confidence 6666666666664444445556666666666666654
No 13
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=1.8e-14 Score=106.15 Aligned_cols=101 Identities=26% Similarity=0.347 Sum_probs=84.8
Q ss_pred ccccceEecCC---------CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCC
Q 048732 61 CQWEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNL 131 (174)
Q Consensus 61 C~w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L 131 (174)
|.+..+.|... ...++.|++++|++. .++ ..|..+++|+.|++++|.+++..+.. |..+++|
T Consensus 10 C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~----~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~----f~~l~~L 80 (193)
T 2wfh_A 10 CLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT----LVP-KELSNYKHLTLIDLSNNRISTLSNQS----FSNMTQL 80 (193)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC----SCC-GGGGGCTTCCEEECCSSCCCCCCTTT----TTTCTTC
T ss_pred eCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc----hhH-HHhhcccCCCEEECCCCcCCEeCHhH----ccCCCCC
Confidence 67888888642 347899999999887 444 67889999999999999999766666 8999999
Q ss_pred CEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCCC
Q 048732 132 KFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDI 171 (174)
Q Consensus 132 ~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP~ 171 (174)
++|+|++|++++..|..|..+++|++|+|++|+|++ +|.
T Consensus 81 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~-~~~ 119 (193)
T 2wfh_A 81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV-VPE 119 (193)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCB-CCT
T ss_pred CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCe-eCh
Confidence 999999999998778889999999999999999985 554
No 14
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.57 E-value=2e-14 Score=107.86 Aligned_cols=71 Identities=25% Similarity=0.242 Sum_probs=39.7
Q ss_pred cccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCC
Q 048732 96 LFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSID 170 (174)
Q Consensus 96 ~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP 170 (174)
.|..+++|++|++++|.+++..+.. |..+++|++|+|++|++++..|..|..+++|++|+|++|+|++..|
T Consensus 76 ~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 146 (220)
T 2v70_A 76 AFEGASGVNEILLTSNRLENVQHKM----FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146 (220)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCGGG----GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred HhCCCCCCCEEECCCCccCccCHhH----hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH
Confidence 3444555555555555554333333 5556666666666666665555666666666666666666665434
No 15
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.54 E-value=1.8e-14 Score=105.77 Aligned_cols=91 Identities=24% Similarity=0.295 Sum_probs=82.8
Q ss_pred CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCC
Q 048732 72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGG 151 (174)
Q Consensus 72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~ 151 (174)
...++.|+|++|++. .+.+..|..+++|++|++++|.+++..|.. |..+++|++|++++|++++..|..|..
T Consensus 53 l~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~ 124 (192)
T 1w8a_A 53 LPHLVKLELKRNQLT----GIEPNAFEGASHIQELQLGENKIKEISNKM----FLGLHQLKTLNLYDNQISCVMPGSFEH 124 (192)
T ss_dssp CTTCCEEECCSSCCC----CBCTTTTTTCTTCCEEECCSCCCCEECSSS----STTCTTCCEEECCSSCCCEECTTSSTT
T ss_pred CCCCCEEECCCCCCC----CcCHhHcCCcccCCEEECCCCcCCccCHHH----hcCCCCCCEEECCCCcCCeeCHHHhhc
Confidence 357999999999987 455778999999999999999999877776 899999999999999999999999999
Q ss_pred CCCCCEEEccCCcccccCC
Q 048732 152 LSSLKHLSLGTNELNGSID 170 (174)
Q Consensus 152 l~~L~~L~Ls~N~l~g~iP 170 (174)
+++|++|++++|.+++..+
T Consensus 125 l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 125 LNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CTTCCEEECTTCCBCCSGG
T ss_pred CCCCCEEEeCCCCccCcCc
Confidence 9999999999999997654
No 16
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.54 E-value=5.2e-14 Score=102.02 Aligned_cols=100 Identities=24% Similarity=0.319 Sum_probs=82.6
Q ss_pred ccccceEecCC---------CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCC
Q 048732 61 CQWEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNL 131 (174)
Q Consensus 61 C~w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L 131 (174)
|....+.|.+. ...++.|+|++|++. .+++..|..+++|+.|++++|.+++..+.. |..+++|
T Consensus 12 C~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~----~~~l~~L 83 (174)
T 2r9u_A 12 CDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQIT----KLEPGVFDHLVNLQQLYFNSNKLTAIPTGV----FDKLTQL 83 (174)
T ss_dssp ECSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTC
T ss_pred ECCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCcc----ccCHHHhcCCcCCCEEECCCCCCCccChhH----hCCcchh
Confidence 44555677541 357899999999887 566788999999999999999999644444 7899999
Q ss_pred CEEeccCCCCCCccccccCCCCCCCEEEccCCccccc
Q 048732 132 KFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGS 168 (174)
Q Consensus 132 ~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ 168 (174)
++|+|++|++++..+..|..+++|++|+|++|++...
T Consensus 84 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 84 TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred hEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 9999999999966666699999999999999998753
No 17
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.52 E-value=5.8e-14 Score=105.27 Aligned_cols=102 Identities=25% Similarity=0.360 Sum_probs=72.4
Q ss_pred ccccceEecCC---------CCcEEEEEcCCCCCCCCccccC-cccccCCCCCCEEeCcCCccccccCcchhhhcCCCCC
Q 048732 61 CQWEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMN-ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKN 130 (174)
Q Consensus 61 C~w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~-~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~ 130 (174)
|.|..+.|... ...++.|+|++|++. .+. ...|..+++|+.|++++|.+++..+.. |..+++
T Consensus 11 C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~----~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~----~~~l~~ 82 (220)
T 2v70_A 11 CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFT----VLEATGIFKKLPQLRKINFSNNKITDIEEGA----FEGASG 82 (220)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCC----EECCCCCGGGCTTCCEEECCSSCCCEECTTT----TTTCTT
T ss_pred ECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCC----ccCchhhhccCCCCCEEECCCCcCCEECHHH----hCCCCC
Confidence 66777777541 235677888888766 332 344677788888888888877555545 777888
Q ss_pred CCEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCC
Q 048732 131 LKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSID 170 (174)
Q Consensus 131 L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP 170 (174)
|++|+|++|++++..|..|..+++|++|+|++|+|++..|
T Consensus 83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 122 (220)
T 2v70_A 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGN 122 (220)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCT
T ss_pred CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECH
Confidence 8888888888876666677778888888888888876544
No 18
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.50 E-value=9.4e-14 Score=110.21 Aligned_cols=98 Identities=17% Similarity=0.267 Sum_probs=77.3
Q ss_pred ccccceEecCC-----------CCcEEEEEcCC-CCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCC
Q 048732 61 CQWEGVECNNT-----------TGRVIKLDLAF-RKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSL 128 (174)
Q Consensus 61 C~w~gv~c~~~-----------~~~v~~L~L~~-n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l 128 (174)
|.|..|.|.+. ..+++.|+|++ |++. .+++..|..|++|+.|+|++|.+++..|.. |.++
T Consensus 8 C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~----~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~----~~~l 79 (347)
T 2ifg_A 8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQ----HLELRDLRGLGELRNLTIVKSGLRFVAPDA----FHFT 79 (347)
T ss_dssp SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCC----EECGGGSCSCCCCSEEECCSSCCCEECTTG----GGSC
T ss_pred ccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCC----CcChhHhccccCCCEEECCCCccceeCHHH----hcCC
Confidence 88888999763 12488889986 8776 566777888999999999999988777766 8888
Q ss_pred CCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccc
Q 048732 129 KNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNG 167 (174)
Q Consensus 129 ~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g 167 (174)
++|+.|+|++|+|++..+..|..++ |+.|+|.+|+|..
T Consensus 80 ~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 80 PRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred cCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9999999999999865555566655 8999999888763
No 19
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.49 E-value=1.4e-13 Score=104.75 Aligned_cols=85 Identities=25% Similarity=0.332 Sum_probs=42.0
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~ 153 (174)
.++.|+|++|++. .+.+..|..+++|++|++++|.+++..|.. +..+++|++|++++|++++..+..|..++
T Consensus 36 ~l~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 107 (251)
T 3m19_A 36 DTEKLDLQSTGLA----TLSDATFRGLTKLTWLNLDYNQLQTLSAGV----FDDLTELGTLGLANNQLASLPLGVFDHLT 107 (251)
T ss_dssp TCCEEECTTSCCC----CCCTTTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred CCCEEEccCCCcC----ccCHhHhcCcccCCEEECCCCcCCccCHhH----hccCCcCCEEECCCCcccccChhHhcccC
Confidence 4666666666655 233444555555555555555555443333 44444444444444444433333444444
Q ss_pred CCCEEEccCCccc
Q 048732 154 SLKHLSLGTNELN 166 (174)
Q Consensus 154 ~L~~L~Ls~N~l~ 166 (174)
+|++|+|++|+|+
T Consensus 108 ~L~~L~L~~N~l~ 120 (251)
T 3m19_A 108 QLDKLYLGGNQLK 120 (251)
T ss_dssp TCCEEECCSSCCC
T ss_pred CCCEEEcCCCcCC
Confidence 4444444444444
No 20
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.48 E-value=2.2e-13 Score=104.76 Aligned_cols=85 Identities=27% Similarity=0.321 Sum_probs=47.9
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~ 153 (174)
.++.|++++|++. .+++..|..+++|++|++++|.++. +|... |..+++|++|++++|++++..+..|..++
T Consensus 38 ~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 109 (270)
T 2o6q_A 38 DTKKLDLQSNKLS----SLPSKAFHRLTKLRLLYLNDNKLQT-LPAGI---FKELKNLETLWVTDNKLQALPIGVFDQLV 109 (270)
T ss_dssp TCSEEECCSSCCS----CCCTTSSSSCTTCCEEECCSSCCSC-CCTTT---TSSCTTCCEEECCSSCCCCCCTTTTTTCS
T ss_pred CCCEEECcCCCCC----eeCHHHhcCCCCCCEEECCCCccCe-eChhh---hcCCCCCCEEECCCCcCCcCCHhHccccc
Confidence 5778888887765 3445556666677777777666663 33221 44555555555555555543334444455
Q ss_pred CCCEEEccCCccc
Q 048732 154 SLKHLSLGTNELN 166 (174)
Q Consensus 154 ~L~~L~Ls~N~l~ 166 (174)
+|++|++++|+++
T Consensus 110 ~L~~L~l~~n~l~ 122 (270)
T 2o6q_A 110 NLAELRLDRNQLK 122 (270)
T ss_dssp SCCEEECCSSCCC
T ss_pred CCCEEECCCCccC
Confidence 5555555555544
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.48 E-value=1.5e-13 Score=115.94 Aligned_cols=88 Identities=30% Similarity=0.336 Sum_probs=73.2
Q ss_pred CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCC
Q 048732 72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGG 151 (174)
Q Consensus 72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~ 151 (174)
+..+++|||++|++. .+++..|.++++|++|++++|.+++..|.. |.++++|++|+|++|++++..+..|.+
T Consensus 51 p~~~~~LdLs~N~i~----~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~----f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLR----HLGSYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp CTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred CcCCCEEEeeCCCCC----CCCHHHHhCCCCCCEEECCCCcCCCcChhH----hcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 357999999999988 677788999999999999999998655555 888888888888888888655667888
Q ss_pred CCCCCEEEccCCcccc
Q 048732 152 LSSLKHLSLGTNELNG 167 (174)
Q Consensus 152 l~~L~~L~Ls~N~l~g 167 (174)
+++|++|++++|++++
T Consensus 123 L~~L~~L~Ls~N~l~~ 138 (635)
T 4g8a_A 123 LSSLQKLVAVETNLAS 138 (635)
T ss_dssp CTTCCEEECTTSCCCC
T ss_pred CCCCCEEECCCCcCCC
Confidence 8888888888888875
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.47 E-value=1.1e-13 Score=113.11 Aligned_cols=104 Identities=26% Similarity=0.426 Sum_probs=71.7
Q ss_pred CCccccc--eEecCC--------CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCC
Q 048732 59 DCCQWEG--VECNNT--------TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSL 128 (174)
Q Consensus 59 ~~C~w~g--v~c~~~--------~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l 128 (174)
..|.|.+ +.|... +.+++.|+|++|++. .+.+..|..+++|++|++++|.+.+.+++.. |..+
T Consensus 6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~---~~~l 78 (455)
T 3v47_A 6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIA----ELNETSFSRLQDLQFLKVEQQTPGLVIRNNT---FRGL 78 (455)
T ss_dssp -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCC----EECTTTTSSCTTCCEEECCCCSTTCEECTTT---TTTC
T ss_pred ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccC----cCChhHhccCccccEEECcCCcccceECccc---cccc
Confidence 4566555 888652 257899999999887 4456667777777777777777766664432 6677
Q ss_pred CCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccccC
Q 048732 129 KNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSI 169 (174)
Q Consensus 129 ~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~i 169 (174)
++|++|++++|++++..|..|+.+++|++|++++|++++.+
T Consensus 79 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 119 (455)
T 3v47_A 79 SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV 119 (455)
T ss_dssp TTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHH
T ss_pred ccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccc
Confidence 77777777777777666667777777777777777766543
No 23
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.46 E-value=2.9e-13 Score=101.45 Aligned_cols=90 Identities=26% Similarity=0.309 Sum_probs=72.8
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
..++.|+|++|++. .+.+..|..+++|++|++++|.++. +|... |..+++|++|+|++|++++..|..|..+
T Consensus 56 ~~L~~L~Ls~N~i~----~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~---f~~l~~L~~L~L~~N~l~~~~~~~~~~l 127 (220)
T 2v9t_B 56 KKLRRIDLSNNQIS----ELAPDAFQGLRSLNSLVLYGNKITE-LPKSL---FEGLFSLQLLLLNANKINCLRVDAFQDL 127 (220)
T ss_dssp TTCCEEECCSSCCC----EECTTTTTTCSSCCEEECCSSCCCC-CCTTT---TTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCEEECCCCcCC----CcCHHHhhCCcCCCEEECCCCcCCc-cCHhH---ccCCCCCCEEECCCCCCCEeCHHHcCCC
Confidence 57889999998887 5567778888999999999998884 44432 7788889999999999888778888888
Q ss_pred CCCCEEEccCCcccccCC
Q 048732 153 SSLKHLSLGTNELNGSID 170 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~g~iP 170 (174)
++|++|+|++|+|++..|
T Consensus 128 ~~L~~L~L~~N~l~~~~~ 145 (220)
T 2v9t_B 128 HNLNLLSLYDNKLQTIAK 145 (220)
T ss_dssp TTCCEEECCSSCCSCCCT
T ss_pred CCCCEEECCCCcCCEECH
Confidence 889999999988886433
No 24
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.46 E-value=2e-13 Score=108.59 Aligned_cols=104 Identities=32% Similarity=0.389 Sum_probs=83.3
Q ss_pred CCCccccceEecC-----------CCCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcC
Q 048732 58 SDCCQWEGVECNN-----------TTGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLS 126 (174)
Q Consensus 58 ~~~C~w~gv~c~~-----------~~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~ 126 (174)
...|.|.++ |+. ....+++|++++|++. .+++..|..+++|+.|++++|.+++..|.. +.
T Consensus 27 ~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~ 97 (353)
T 2z80_A 27 SLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRIT----YISNSDLQRCVNLQALVLTSNGINTIEEDS----FS 97 (353)
T ss_dssp CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTSCCCEECTTT----TT
T ss_pred CCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCc----ccCHHHhccCCCCCEEECCCCccCccCHhh----cC
Confidence 456888887 542 1247999999999887 566667899999999999999998766666 88
Q ss_pred CCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCCC
Q 048732 127 SLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDI 171 (174)
Q Consensus 127 ~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP~ 171 (174)
.+++|++|++++|++++..+..++.+++|++|++++|++++ +|.
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~ 141 (353)
T 2z80_A 98 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGE 141 (353)
T ss_dssp TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCS
T ss_pred CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCc
Confidence 89999999999999986555558889999999999998884 654
No 25
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.46 E-value=1.9e-13 Score=114.17 Aligned_cols=99 Identities=33% Similarity=0.449 Sum_probs=81.8
Q ss_pred CccccceEecCC-----------CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCC
Q 048732 60 CCQWEGVECNNT-----------TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSL 128 (174)
Q Consensus 60 ~C~w~gv~c~~~-----------~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l 128 (174)
.|.|.|+ |+.. ...+++|++++|++. .+.+..|..+++|++|++++|.+++..|.. |..+
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l 73 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKIT----YIGHGDLRACANLQVLILKSSRINTIEGDA----FYSL 73 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCC----EECSSTTSSCTTCCEEECTTSCCCEECTTT----TTTC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccC----ccChhhhhcCCcccEEECCCCCcCccChhh----cccc
Confidence 5888887 7531 247999999999887 455677889999999999999998766666 8889
Q ss_pred CCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccc
Q 048732 129 KNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNG 167 (174)
Q Consensus 129 ~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g 167 (174)
++|++|++++|++++..|..|+.+++|++|++++|++++
T Consensus 74 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 112 (549)
T 2z81_A 74 GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT 112 (549)
T ss_dssp TTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSS
T ss_pred ccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccc
Confidence 999999999999987777778888899999999998875
No 26
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.46 E-value=3.6e-13 Score=107.84 Aligned_cols=99 Identities=23% Similarity=0.284 Sum_probs=58.8
Q ss_pred ccccceEecCC---------CCcEEEEEcCCCCCCCCccccCccccc-CCCCCCEEeCcCCccccccCcchhhhcCCCCC
Q 048732 61 CQWEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMNASLFT-PFQQLEFLDLSGNNITGCVQNEGLDRLSSLKN 130 (174)
Q Consensus 61 C~w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~~~~~~-~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~ 130 (174)
|.+..+.|... ...++.|+|++|++. .+++..|. .+++|+.|++++|.+++..+.. |..+++
T Consensus 18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~----~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~----~~~l~~ 89 (361)
T 2xot_A 18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLS----RLRAEWTPTRLTNLHSLLLSHNHLNFISSEA----FVPVPN 89 (361)
T ss_dssp EETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCC----EECTTSSSSCCTTCCEEECCSSCCCEECTTT----TTTCTT
T ss_pred ECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCC----ccChhhhhhcccccCEEECCCCcCCccChhh----ccCCCC
Confidence 67777888641 235778888888776 44455454 6666666666666666444433 555555
Q ss_pred CCEEeccCCCCCCccccccCCCCCCCEEEccCCcccc
Q 048732 131 LKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNG 167 (174)
Q Consensus 131 L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g 167 (174)
|++|+|++|++++..+..|..+++|++|+|++|+|++
T Consensus 90 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 126 (361)
T 2xot_A 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV 126 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccE
Confidence 6666666555554444445555555555555555553
No 27
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.44 E-value=2.8e-13 Score=97.83 Aligned_cols=90 Identities=23% Similarity=0.282 Sum_probs=78.5
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
..++.|++++|++. .+++..|..+++|+.|++++|.+++..+.. +..+++|++|++++|++++..+..+..+
T Consensus 52 ~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~~~~~~l 123 (177)
T 2o6r_A 52 TQLTKLSLSQNQIQ----SLPDGVFDKLTKLTILYLHENKLQSLPNGV----FDKLTQLKELALDTNQLKSVPDGIFDRL 123 (177)
T ss_dssp TTCSEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred ccccEEECCCCcce----EeChhHccCCCccCEEECCCCCccccCHHH----hhCCcccCEEECcCCcceEeCHHHhcCC
Confidence 57999999999887 566777899999999999999999665555 7899999999999999996666667899
Q ss_pred CCCCEEEccCCcccccCC
Q 048732 153 SSLKHLSLGTNELNGSID 170 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~g~iP 170 (174)
++|++|++++|++++..|
T Consensus 124 ~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 124 TSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTCCEEECCSSCBCCCHH
T ss_pred cccCEEEecCCCeeccCc
Confidence 999999999999998654
No 28
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.42 E-value=1.6e-13 Score=107.91 Aligned_cols=90 Identities=24% Similarity=0.242 Sum_probs=74.1
Q ss_pred EEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCC
Q 048732 75 VIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSS 154 (174)
Q Consensus 75 v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~ 154 (174)
++.|++++|++. ...+..+..+++|+.|++++|.+++.+|. +..+++|++|++++|++++.+|..+..+++
T Consensus 199 L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 269 (313)
T 1ogq_A 199 LAFVDLSRNMLE----GDASVLFGSDKNTQKIHLAKNSLAFDLGK-----VGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269 (313)
T ss_dssp CSEEECCSSEEE----ECCGGGCCTTSCCSEEECCSSEECCBGGG-----CCCCTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred ccEEECcCCccc----CcCCHHHhcCCCCCEEECCCCceeeecCc-----ccccCCCCEEECcCCcccCcCChHHhcCcC
Confidence 555666665544 23456678888899999999988866654 778899999999999999999999999999
Q ss_pred CCEEEccCCcccccCCCCC
Q 048732 155 LKHLSLGTNELNGSIDIEG 173 (174)
Q Consensus 155 L~~L~Ls~N~l~g~iP~~~ 173 (174)
|++|++++|+++|.+|..+
T Consensus 270 L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 270 LHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp CCEEECCSSEEEEECCCST
T ss_pred CCEEECcCCcccccCCCCc
Confidence 9999999999999999764
No 29
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.42 E-value=8.1e-13 Score=97.19 Aligned_cols=87 Identities=26% Similarity=0.324 Sum_probs=77.9
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
.+++.|+|++|++. .+++..|..+++|++|++++|.+++..|.. |..+++|++|+|++|++++..+..|..+
T Consensus 54 ~~L~~L~Ls~N~i~----~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~----f~~l~~L~~L~L~~N~l~~~~~~~~~~l 125 (193)
T 2wfh_A 54 KHLTLIDLSNNRIS----TLSNQSFSNMTQLLTLILSYNRLRCIPPRT----FDGLKSLRLLSLHGNDISVVPEGAFNDL 125 (193)
T ss_dssp TTCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCBCCTTT----TTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred cCCCEEECCCCcCC----EeCHhHccCCCCCCEEECCCCccCEeCHHH----hCCCCCCCEEECCCCCCCeeChhhhhcC
Confidence 57999999999988 566778999999999999999999766666 9999999999999999996666679999
Q ss_pred CCCCEEEccCCcccc
Q 048732 153 SSLKHLSLGTNELNG 167 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~g 167 (174)
++|+.|++++|.+..
T Consensus 126 ~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 126 SALSHLAIGANPLYC 140 (193)
T ss_dssp TTCCEEECCSSCEEC
T ss_pred ccccEEEeCCCCeec
Confidence 999999999999864
No 30
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.41 E-value=1e-12 Score=99.00 Aligned_cols=86 Identities=26% Similarity=0.322 Sum_probs=66.8
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
..++.|+|++|++. .+++..|..+++|+.|++++|.+++..+.. |..+++|++|++++|+++ .+|..+..+
T Consensus 64 ~~L~~L~L~~N~l~----~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~----~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 134 (229)
T 3e6j_A 64 INLKELYLGSNQLG----ALPVGVFDSLTQLTVLDLGTNQLTVLPSAV----FDRLVHLKELFMCCNKLT-ELPRGIERL 134 (229)
T ss_dssp TTCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCC-SCCTTGGGC
T ss_pred cCCcEEECCCCCCC----CcChhhcccCCCcCEEECCCCcCCccChhH----hCcchhhCeEeccCCccc-ccCcccccC
Confidence 46888888888776 455666788888888888888888554444 677888888888888887 777777888
Q ss_pred CCCCEEEccCCcccc
Q 048732 153 SSLKHLSLGTNELNG 167 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~g 167 (174)
++|++|+|++|+|++
T Consensus 135 ~~L~~L~L~~N~l~~ 149 (229)
T 3e6j_A 135 THLTHLALDQNQLKS 149 (229)
T ss_dssp TTCSEEECCSSCCCC
T ss_pred CCCCEEECCCCcCCc
Confidence 888888888888874
No 31
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.41 E-value=1.2e-12 Score=96.67 Aligned_cols=89 Identities=21% Similarity=0.245 Sum_probs=45.2
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~ 153 (174)
+++.|++++|++. .+++..|..+++|++|++++|.+++..+.. +..+++|++|++++|++++..+..+..++
T Consensus 77 ~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 148 (208)
T 2o6s_A 77 SLTYLNLSTNQLQ----SLPNGVFDKLTQLKELALNTNQLQSLPDGV----FDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148 (208)
T ss_dssp TCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred CcCEEECCCCcCC----ccCHhHhcCccCCCEEEcCCCcCcccCHhH----hccCCcCCEEECCCCccceeCHHHhccCC
Confidence 4455555555444 233334455555555555555555333332 45555555555555555544444455555
Q ss_pred CCCEEEccCCcccccCC
Q 048732 154 SLKHLSLGTNELNGSID 170 (174)
Q Consensus 154 ~L~~L~Ls~N~l~g~iP 170 (174)
+|++|++++|.+.+..|
T Consensus 149 ~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 149 SLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp TCCEEECCSCCBCCCTT
T ss_pred CccEEEecCCCeecCCC
Confidence 55555555555554443
No 32
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.41 E-value=1.3e-12 Score=99.38 Aligned_cols=86 Identities=28% Similarity=0.358 Sum_probs=47.9
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~ 153 (174)
.++.|+|++|++. .+++..|..+++|++|++++|.+++..+.. |..+++|+.|++++|++++..+..|+.++
T Consensus 84 ~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 155 (251)
T 3m19_A 84 ELGTLGLANNQLA----SLPLGVFDHLTQLDKLYLGGNQLKSLPSGV----FDRLTKLKELRLNTNQLQSIPAGAFDKLT 155 (251)
T ss_dssp TCCEEECTTSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCEEECCCCccc----ccChhHhcccCCCCEEEcCCCcCCCcChhH----hccCCcccEEECcCCcCCccCHHHcCcCc
Confidence 4555555555544 333444555556666666666555333332 45566666666666666644444566666
Q ss_pred CCCEEEccCCcccc
Q 048732 154 SLKHLSLGTNELNG 167 (174)
Q Consensus 154 ~L~~L~Ls~N~l~g 167 (174)
+|++|+|++|++++
T Consensus 156 ~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 156 NLQTLSLSTNQLQS 169 (251)
T ss_dssp TCCEEECCSSCCSC
T ss_pred CCCEEECCCCcCCc
Confidence 66666666666664
No 33
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.40 E-value=5.7e-13 Score=105.48 Aligned_cols=89 Identities=17% Similarity=0.064 Sum_probs=66.7
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~ 153 (174)
.++.|++++|++. .+ +..+..+++|++|++++|.+.+.+|.. ++.+++|+.|++++|.+.+.+|..++.++
T Consensus 207 ~L~~L~L~~N~l~----~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~----~~~l~~L~~L~L~~n~~~~~~p~~~~~l~ 277 (328)
T 4fcg_A 207 NLKSLKIRNSPLS----AL-GPAIHHLPKLEELDLRGCTALRNYPPI----FGGRAPLKRLILKDCSNLLTLPLDIHRLT 277 (328)
T ss_dssp TCCEEEEESSCCC----CC-CGGGGGCTTCCEEECTTCTTCCBCCCC----TTCCCCCCEEECTTCTTCCBCCTTGGGCT
T ss_pred CCCEEEccCCCCC----cC-chhhccCCCCCEEECcCCcchhhhHHH----hcCCCCCCEEECCCCCchhhcchhhhcCC
Confidence 4566666666554 22 234677778888888888777777776 77888888888888888888888888888
Q ss_pred CCCEEEccCCcccccCCC
Q 048732 154 SLKHLSLGTNELNGSIDI 171 (174)
Q Consensus 154 ~L~~L~Ls~N~l~g~iP~ 171 (174)
+|++|+|++|++.|.+|.
T Consensus 278 ~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 278 QLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp TCCEEECTTCTTCCCCCG
T ss_pred CCCEEeCCCCCchhhccH
Confidence 888888888888888875
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.40 E-value=1.8e-12 Score=106.76 Aligned_cols=100 Identities=26% Similarity=0.353 Sum_probs=75.4
Q ss_pred ccceEecCC---------CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCE
Q 048732 63 WEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKF 133 (174)
Q Consensus 63 w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~ 133 (174)
|..|.|... +..++.|+|++|++. .+.+..|..+++|++|++++|.+++..|.. |.++++|++
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~~ 84 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIK----TLNQDEFASFPHLEELELNENIVSAVEPGA----FNNLFNLRT 84 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCC----EECTTTTTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCE
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccc----eECHhHccCCCCCCEEECCCCccCEeChhh----hhCCccCCE
Confidence 567888641 347889999999887 555677888888888888888888766666 778888888
Q ss_pred EeccCCCCCCccccccCCCCCCCEEEccCCcccccCC
Q 048732 134 LDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSID 170 (174)
Q Consensus 134 L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP 170 (174)
|+|++|++++..+..|..+++|++|+|++|++++..|
T Consensus 85 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~ 121 (477)
T 2id5_A 85 LGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLD 121 (477)
T ss_dssp EECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECT
T ss_pred EECCCCcCCccCcccccCCCCCCEEECCCCccccCCh
Confidence 8888888875555567777788888888887776544
No 35
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.38 E-value=2.3e-12 Score=109.00 Aligned_cols=87 Identities=28% Similarity=0.355 Sum_probs=64.6
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
.+++.|++++|++. .+++..|.++++|++|++++|.+++..|.. |.++++|++|++++|++++..|..|+.+
T Consensus 32 ~~l~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~----~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 103 (606)
T 3vq2_A 32 SSTKNIDLSFNPLK----ILKSYSFSNFSELQWLDLSRCEIETIEDKA----WHGLHHLSNLILTGNPIQSFSPGSFSGL 103 (606)
T ss_dssp TTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCCCCTTSSTTC
T ss_pred CCcCEEECCCCCcC----EeChhhccCCccCcEEeCCCCcccccCHHH----hhchhhcCEeECCCCcccccChhhcCCc
Confidence 57888888888776 455666777788888888888777655655 7777777777777777776667777777
Q ss_pred CCCCEEEccCCcccc
Q 048732 153 SSLKHLSLGTNELNG 167 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~g 167 (174)
++|++|++++|++++
T Consensus 104 ~~L~~L~L~~n~l~~ 118 (606)
T 3vq2_A 104 TSLENLVAVETKLAS 118 (606)
T ss_dssp TTCCEEECTTSCCCC
T ss_pred ccCCEEEccCCcccc
Confidence 777777777777764
No 36
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.37 E-value=4.5e-12 Score=97.85 Aligned_cols=86 Identities=22% Similarity=0.218 Sum_probs=41.2
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCC-CCCccccccCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNH-FNNSIFSSLGG 151 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~-l~g~~p~~l~~ 151 (174)
..+++|++++|++. .+++..|..+++|++|++++|.+++..|.. +..+++|++|++++|. ++...|..+..
T Consensus 32 ~~l~~L~l~~n~i~----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~~l~~~~~~~~~~ 103 (285)
T 1ozn_A 32 AASQRIFLHGNRIS----HVPAASFRACRNLTILWLHSNVLARIDAAA----FTGLALLEQLDLSDNAQLRSVDPATFHG 103 (285)
T ss_dssp TTCSEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred CCceEEEeeCCcCC----ccCHHHcccCCCCCEEECCCCccceeCHhh----cCCccCCCEEeCCCCCCccccCHHHhcC
Confidence 35666666666555 333444555555555555555554433333 4444444444444443 33333344444
Q ss_pred CCCCCEEEccCCccc
Q 048732 152 LSSLKHLSLGTNELN 166 (174)
Q Consensus 152 l~~L~~L~Ls~N~l~ 166 (174)
+++|++|++++|+++
T Consensus 104 l~~L~~L~l~~n~l~ 118 (285)
T 1ozn_A 104 LGRLHTLHLDRCGLQ 118 (285)
T ss_dssp CTTCCEEECTTSCCC
T ss_pred CcCCCEEECCCCcCC
Confidence 444444444444444
No 37
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.37 E-value=2.5e-12 Score=98.95 Aligned_cols=87 Identities=24% Similarity=0.343 Sum_probs=44.3
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
..++.|++++|++. .+++..|..+++|++|++++|.+++..+.. +..+++|+.|++++|++++..+..++.+
T Consensus 109 ~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l 180 (272)
T 3rfs_A 109 TNLKELVLVENQLQ----SLPDGVFDKLTNLTYLNLAHNQLQSLPKGV----FDKLTNLTELDLSYNQLQSLPEGVFDKL 180 (272)
T ss_dssp TTCCEEECTTSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCCEEECCCCcCC----ccCHHHhccCCCCCEEECCCCccCccCHHH----hccCccCCEEECCCCCcCccCHHHhcCC
Confidence 35666666666554 233444555555555555555555333332 4455555555555555554444444455
Q ss_pred CCCCEEEccCCcccc
Q 048732 153 SSLKHLSLGTNELNG 167 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~g 167 (174)
++|++|++++|++++
T Consensus 181 ~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 181 TQLKDLRLYQNQLKS 195 (272)
T ss_dssp TTCCEEECCSSCCSC
T ss_pred ccCCEEECCCCcCCc
Confidence 555555555555554
No 38
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.37 E-value=3.6e-12 Score=104.29 Aligned_cols=97 Identities=26% Similarity=0.306 Sum_probs=79.0
Q ss_pred ccceEecCC---------CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCE
Q 048732 63 WEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKF 133 (174)
Q Consensus 63 w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~ 133 (174)
+..|.|... ...++.|+|++|++. .+.+..|..+++|+.|++++|.+++..+.. |.++++|++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~----~~~l~~L~~ 116 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQ----IIKVNSFKHLRHLEILQLSRNHIRTIEIGA----FNGLANLNT 116 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCC----EECTTTTSSCSSCCEEECCSSCCCEECGGG----GTTCSSCCE
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCC----eeCHHHhhCCCCCCEEECCCCcCCccChhh----ccCCccCCE
Confidence 557888641 356889999999887 566778899999999999999998655555 888999999
Q ss_pred EeccCCCCCCccccccCCCCCCCEEEccCCcccc
Q 048732 134 LDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNG 167 (174)
Q Consensus 134 L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g 167 (174)
|+|++|++++..+..|..+++|++|+|++|++++
T Consensus 117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 150 (440)
T 3zyj_A 117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES 150 (440)
T ss_dssp EECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE
T ss_pred EECCCCcCCeeCHhHhhccccCceeeCCCCcccc
Confidence 9999999986666678888999999999998874
No 39
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.37 E-value=3.6e-12 Score=104.65 Aligned_cols=100 Identities=24% Similarity=0.295 Sum_probs=84.1
Q ss_pred ccceEecCC---------CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCE
Q 048732 63 WEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKF 133 (174)
Q Consensus 63 w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~ 133 (174)
+..+.|... ...++.|+|++|++. .+.+..|..+++|+.|++++|.+++..|.. |.++++|++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~ 127 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQ----MIQADTFRHLHHLEVLQLGRNSIRQIEVGA----FNGLASLNT 127 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCE
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCc----eECHHHcCCCCCCCEEECCCCccCCcChhh----ccCcccCCE
Confidence 467888642 357999999999887 566788999999999999999999766666 899999999
Q ss_pred EeccCCCCCCccccccCCCCCCCEEEccCCcccccCCC
Q 048732 134 LDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDI 171 (174)
Q Consensus 134 L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP~ 171 (174)
|+|++|++++..+..|+.+++|++|+|++|++++ +|.
T Consensus 128 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~ 164 (452)
T 3zyi_A 128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES-IPS 164 (452)
T ss_dssp EECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE-ECT
T ss_pred EECCCCcCCccChhhhcccCCCCEEECCCCCcce-eCH
Confidence 9999999997666778999999999999999884 443
No 40
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.36 E-value=4.2e-12 Score=91.46 Aligned_cols=84 Identities=23% Similarity=0.202 Sum_probs=72.0
Q ss_pred EEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCC
Q 048732 76 IKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSL 155 (174)
Q Consensus 76 ~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L 155 (174)
+++++++|++. .++.. + .++|+.|++++|.+++..|.. |..+++|++|+|++|++++..|..|..+++|
T Consensus 12 ~~l~~s~n~l~----~ip~~-~--~~~l~~L~L~~N~i~~~~~~~----~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L 80 (170)
T 3g39_A 12 TTVDCSGKSLA----SVPTG-I--PTTTQVLYLYDNQITKLEPGV----FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL 80 (170)
T ss_dssp TEEECTTSCCS----SCCSC-C--CTTCSEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEEeCCCCcC----ccCcc-C--CCCCcEEEcCCCcCCccChhh----hcCcccCCEEECCCCCcCccChhhccCCCCC
Confidence 57999999887 44443 3 388999999999999877777 9999999999999999997777778999999
Q ss_pred CEEEccCCcccccCC
Q 048732 156 KHLSLGTNELNGSID 170 (174)
Q Consensus 156 ~~L~Ls~N~l~g~iP 170 (174)
++|+|++|+|++..|
T Consensus 81 ~~L~L~~N~l~~~~~ 95 (170)
T 3g39_A 81 TQLSLNDNQLKSIPR 95 (170)
T ss_dssp CEEECCSSCCCCCCT
T ss_pred CEEECCCCccCEeCH
Confidence 999999999996443
No 41
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.36 E-value=1.3e-12 Score=98.61 Aligned_cols=91 Identities=12% Similarity=0.098 Sum_probs=74.7
Q ss_pred CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCc-cccccCcchhhhcCCCCCCCEEeccC-CCCCCcccccc
Q 048732 72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNN-ITGCVQNEGLDRLSSLKNLKFLDLTL-NHFNNSIFSSL 149 (174)
Q Consensus 72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~-l~g~~p~~~~~~~~~l~~L~~L~ls~-N~l~g~~p~~l 149 (174)
...++.|++++|++. .+++..|..+++|+.|++++|. ++...+.. |..+++|++|++++ |++++..+..|
T Consensus 30 ~~~l~~L~l~~n~l~----~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~----f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 30 PPSTQTLKLIETHLR----TIPSHAFSNLPNISRIYVSIDVTLQQLESHS----FYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp CTTCCEEEEESCCCS----EECTTTTTTCTTCCEEEEECCSSCCEECTTT----EESCTTCCEEEEEEETTCCEECTTSE
T ss_pred CCcccEEEEeCCcce----EECHHHccCCCCCcEEeCCCCCCcceeCHhH----cCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 357899999999887 5667778899999999999997 77444444 88899999999998 99986666788
Q ss_pred CCCCCCCEEEccCCcccccCCC
Q 048732 150 GGLSSLKHLSLGTNELNGSIDI 171 (174)
Q Consensus 150 ~~l~~L~~L~Ls~N~l~g~iP~ 171 (174)
..+++|++|++++|++++ +|.
T Consensus 102 ~~l~~L~~L~l~~n~l~~-lp~ 122 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKM-FPD 122 (239)
T ss_dssp ECCTTCCEEEEEEECCCS-CCC
T ss_pred CCCCCCCEEeCCCCCCcc-ccc
Confidence 889999999999998886 665
No 42
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.36 E-value=4.3e-12 Score=97.66 Aligned_cols=91 Identities=21% Similarity=0.268 Sum_probs=71.2
Q ss_pred CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCC
Q 048732 72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGG 151 (174)
Q Consensus 72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~ 151 (174)
...++.|++++|++. .+++..|..+++|++|++++|.+++..+.. +..+++|++|++++|++++..|..++.
T Consensus 84 l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~ 155 (272)
T 3rfs_A 84 LTNLTYLILTGNQLQ----SLPNGVFDKLTNLKELVLVENQLQSLPDGV----FDKLTNLTYLNLAHNQLQSLPKGVFDK 155 (272)
T ss_dssp CTTCCEEECTTSCCC----CCCTTTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCCEEECCCCccC----ccChhHhcCCcCCCEEECCCCcCCccCHHH----hccCCCCCEEECCCCccCccCHHHhcc
Confidence 356778888888776 455666788888888888888888655555 788888999999999888766677788
Q ss_pred CCCCCEEEccCCcccccCC
Q 048732 152 LSSLKHLSLGTNELNGSID 170 (174)
Q Consensus 152 l~~L~~L~Ls~N~l~g~iP 170 (174)
+++|+.|++++|++++..|
T Consensus 156 l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 156 LTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp CTTCCEEECCSSCCCCCCT
T ss_pred CccCCEEECCCCCcCccCH
Confidence 8889999999998886443
No 43
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.35 E-value=1.1e-12 Score=102.22 Aligned_cols=97 Identities=27% Similarity=0.422 Sum_probs=63.5
Q ss_pred ccccceEecCC---------CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccc--cCcchhhhcCCCC
Q 048732 61 CQWEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGC--VQNEGLDRLSSLK 129 (174)
Q Consensus 61 C~w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~--~p~~~~~~~~~l~ 129 (174)
|.|.++.|... ...+++|++++|++. .+++..|..+++|++|++++|.++.. +|.. +..++
T Consensus 7 C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~~~~~ 78 (306)
T 2z66_A 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQ----SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS----DFGTT 78 (306)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH----HHSCS
T ss_pred eCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccC----ccCHhHhhccccCCEEECCCCccCcccCcccc----ccccc
Confidence 88999999752 247999999999887 56666688899999999999988732 2333 33455
Q ss_pred CCCEEeccCCCCCCccccccCCCCCCCEEEccCCccc
Q 048732 130 NLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELN 166 (174)
Q Consensus 130 ~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~ 166 (174)
+|++|++++|.++ .+|..+..+++|++|++++|+++
T Consensus 79 ~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~ 114 (306)
T 2z66_A 79 SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK 114 (306)
T ss_dssp CCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEE
T ss_pred ccCEEECCCCccc-cChhhcCCCCCCCEEECCCCccc
Confidence 5555555555554 34444444444555555444444
No 44
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.35 E-value=2.4e-12 Score=103.03 Aligned_cols=87 Identities=24% Similarity=0.354 Sum_probs=55.7
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
.+++.|+|++|++. .+++..|..+++|++|++++|.+++..+.. |..+++|++|+|++|++++..|..|..+
T Consensus 64 ~~L~~L~L~~N~i~----~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~i~~~~~~~~~~l 135 (361)
T 2xot_A 64 TNLHSLLLSHNHLN----FISSEAFVPVPNLRYLDLSSNHLHTLDEFL----FSDLQALEVLLLYNNHIVVVDRNAFEDM 135 (361)
T ss_dssp TTCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred cccCEEECCCCcCC----ccChhhccCCCCCCEEECCCCcCCcCCHHH----hCCCcCCCEEECCCCcccEECHHHhCCc
Confidence 45677777777665 445555666777777777777766444433 6666666666666666665556666666
Q ss_pred CCCCEEEccCCcccc
Q 048732 153 SSLKHLSLGTNELNG 167 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~g 167 (174)
++|+.|+|++|+|++
T Consensus 136 ~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 136 AQLQKLYLSQNQISR 150 (361)
T ss_dssp TTCCEEECCSSCCCS
T ss_pred ccCCEEECCCCcCCe
Confidence 666666666666663
No 45
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.35 E-value=1.1e-12 Score=92.10 Aligned_cols=88 Identities=22% Similarity=0.210 Sum_probs=75.0
Q ss_pred CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCc-cccccC
Q 048732 72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNS-IFSSLG 150 (174)
Q Consensus 72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~-~p~~l~ 150 (174)
..+++.|++++|++. .+ ..+..+++|++|++++|.+++.+|.. +..+++|++|++++|++++. .|..++
T Consensus 41 l~~L~~L~l~~n~l~----~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~ls~N~i~~~~~~~~~~ 110 (149)
T 2je0_A 41 FEELEFLSTINVGLT----SI--ANLPKLNKLKKLELSDNRVSGGLEVL----AEKCPNLTHLNLSGNKIKDLSTIEPLK 110 (149)
T ss_dssp CTTCCEEECTTSCCC----CC--TTCCCCTTCCEEECCSSCCCSCTHHH----HHHCTTCCEEECTTSCCCSHHHHGGGG
T ss_pred cCCCcEEECcCCCCC----Cc--hhhhcCCCCCEEECCCCcccchHHHH----hhhCCCCCEEECCCCcCCChHHHHHHh
Confidence 367999999999876 33 56888999999999999999777765 77799999999999999963 458899
Q ss_pred CCCCCCEEEccCCcccccC
Q 048732 151 GLSSLKHLSLGTNELNGSI 169 (174)
Q Consensus 151 ~l~~L~~L~Ls~N~l~g~i 169 (174)
.+++|++|++++|++++..
T Consensus 111 ~l~~L~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 111 KLENLKSLDLFNCEVTNLN 129 (149)
T ss_dssp GCTTCCEEECTTCGGGGST
T ss_pred hCCCCCEEeCcCCcccchH
Confidence 9999999999999998643
No 46
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.34 E-value=2.9e-12 Score=108.09 Aligned_cols=87 Identities=22% Similarity=0.267 Sum_probs=73.6
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
.+++.|+|++|++. .+++..|.++++|++|+|++|++++..+.. |.++++|++|++++|++++..+..|+.+
T Consensus 76 ~~L~~L~Ls~N~i~----~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~----f~~L~~L~~L~Ls~N~l~~l~~~~~~~L 147 (635)
T 4g8a_A 76 PELQVLDLSRCEIQ----TIEDGAYQSLSHLSTLILTGNPIQSLALGA----FSGLSSLQKLVAVETNLASLENFPIGHL 147 (635)
T ss_dssp TTCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCEECGGG----GTTCTTCCEEECTTSCCCCSTTCCCTTC
T ss_pred CCCCEEECCCCcCC----CcChhHhcCCCCCCEEEccCCcCCCCCHHH----hcCCCCCCEEECCCCcCCCCChhhhhcC
Confidence 47899999999887 677788999999999999999998544444 8889999999999999987666678899
Q ss_pred CCCCEEEccCCcccc
Q 048732 153 SSLKHLSLGTNELNG 167 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~g 167 (174)
++|++|++++|++++
T Consensus 148 ~~L~~L~Ls~N~l~~ 162 (635)
T 4g8a_A 148 KTLKELNVAHNLIQS 162 (635)
T ss_dssp TTCCEEECCSSCCCC
T ss_pred cccCeeccccCcccc
Confidence 999999999998874
No 47
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.34 E-value=5.6e-12 Score=91.22 Aligned_cols=84 Identities=21% Similarity=0.172 Sum_probs=71.5
Q ss_pred EEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCC
Q 048732 76 IKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSL 155 (174)
Q Consensus 76 ~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L 155 (174)
+.+++++|++. .++.. + .++|+.|++++|.+.+..|.. |..+++|++|+|++|++++..+..|..+++|
T Consensus 15 ~~l~~~~n~l~----~iP~~-~--~~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L 83 (174)
T 2r9u_A 15 TLVNCQNIRLA----SVPAG-I--PTDKQRLWLNNNQITKLEPGV----FDHLVNLQQLYFNSNKLTAIPTGVFDKLTQL 83 (174)
T ss_dssp SEEECCSSCCS----SCCSC-C--CTTCSEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cEEEeCCCCCC----ccCCC-c--CCCCcEEEeCCCCccccCHHH----hcCCcCCCEEECCCCCCCccChhHhCCcchh
Confidence 57899999876 45443 3 388999999999999877777 9999999999999999997666678999999
Q ss_pred CEEEccCCcccccCCC
Q 048732 156 KHLSLGTNELNGSIDI 171 (174)
Q Consensus 156 ~~L~Ls~N~l~g~iP~ 171 (174)
++|+|++|+|++ +|.
T Consensus 84 ~~L~L~~N~l~~-l~~ 98 (174)
T 2r9u_A 84 TQLDLNDNHLKS-IPR 98 (174)
T ss_dssp CEEECCSSCCCC-CCT
T ss_pred hEEECCCCccce-eCH
Confidence 999999999996 554
No 48
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.34 E-value=7.2e-12 Score=96.28 Aligned_cols=86 Identities=30% Similarity=0.364 Sum_probs=46.3
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~ 153 (174)
.++.|++++|++. .+++..|..+++|++|++++|.+.+..+.. +..+++|++|++++|.+++..|..|..++
T Consensus 29 ~l~~L~ls~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (276)
T 2z62_A 29 STKNLDLSFNPLR----HLGSYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (276)
T ss_dssp TCCEEECTTCCCC----EECTTTTTTCTTCSEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred CccEEECCCCccc----ccCHhHhccccCCcEEECCCCcCCccCHHH----ccCCcCCCEEECCCCccCccChhhhcCCc
Confidence 4666666666655 333444555666666666666555433333 55555555555555555544444455555
Q ss_pred CCCEEEccCCcccc
Q 048732 154 SLKHLSLGTNELNG 167 (174)
Q Consensus 154 ~L~~L~Ls~N~l~g 167 (174)
+|++|++++|++++
T Consensus 101 ~L~~L~l~~n~l~~ 114 (276)
T 2z62_A 101 SLQKLVAVETNLAS 114 (276)
T ss_dssp TCCEEECTTSCCCC
T ss_pred cccEEECCCCCccc
Confidence 55555555555443
No 49
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.34 E-value=2.3e-12 Score=113.44 Aligned_cols=101 Identities=24% Similarity=0.235 Sum_probs=57.9
Q ss_pred cccceEecCCCCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCC
Q 048732 62 QWEGVECNNTTGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHF 141 (174)
Q Consensus 62 ~w~gv~c~~~~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l 141 (174)
.|..|.+ .+.++++|+|++|++. .+.+..|..+++|++|++++|...+.+++.. |.++++|++|+|++|.+
T Consensus 15 ~L~~vP~--lp~~l~~LdLs~N~i~----~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~---f~~L~~L~~L~Ls~N~l 85 (844)
T 3j0a_A 15 NLTQVPQ--VLNTTERLLLSFNYIR----TVTASSFPFLEQLQLLELGSQYTPLTIDKEA---FRNLPNLRILDLGSSKI 85 (844)
T ss_dssp CSSCCCS--SCTTCCEEEEESCCCC----EECSSSCSSCCSCSEEEECTTCCCCEECTTT---TSSCTTCCEEECTTCCC
T ss_pred CCCCCCC--CCCCcCEEECCCCcCC----ccChhHCcccccCeEEeCCCCCCccccCHHH---hcCCCCCCEEECCCCcC
Confidence 4455554 3467888888888776 3444555666666666666665444442221 55555566666665555
Q ss_pred CCccccccCCCCCCCEEEccCCcccccCCC
Q 048732 142 NNSIFSSLGGLSSLKHLSLGTNELNGSIDI 171 (174)
Q Consensus 142 ~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP~ 171 (174)
++..|..|+.+++|++|+|++|.+++.+|.
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~ 115 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLK 115 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCCCSSCCST
T ss_pred cccCHhHccCCcccCEeeCcCCCCCccccc
Confidence 555555555555555555555555554443
No 50
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.34 E-value=1.8e-12 Score=90.93 Aligned_cols=86 Identities=26% Similarity=0.349 Sum_probs=75.5
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
.+++.|++++|++..+.+ +..+..+++|+.|++++|.+++. .. +..+++|++|++++|.+++.+|..++.+
T Consensus 17 ~~l~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~--~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 87 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKL---EGLTDEFEELEFLSTINVGLTSI--AN----LPKLNKLKKLELSDNRVSGGLEVLAEKC 87 (149)
T ss_dssp GGCSEEECTTCBCBTTBC---CSCCTTCTTCCEEECTTSCCCCC--TT----CCCCTTCCEEECCSSCCCSCTHHHHHHC
T ss_pred ccCeEEEccCCcCChhHH---HHHHhhcCCCcEEECcCCCCCCc--hh----hhcCCCCCEEECCCCcccchHHHHhhhC
Confidence 578999999998763332 55678999999999999999865 44 8999999999999999998899988889
Q ss_pred CCCCEEEccCCcccc
Q 048732 153 SSLKHLSLGTNELNG 167 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~g 167 (174)
++|++|++++|++++
T Consensus 88 ~~L~~L~ls~N~i~~ 102 (149)
T 2je0_A 88 PNLTHLNLSGNKIKD 102 (149)
T ss_dssp TTCCEEECTTSCCCS
T ss_pred CCCCEEECCCCcCCC
Confidence 999999999999986
No 51
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.34 E-value=3.8e-12 Score=104.03 Aligned_cols=89 Identities=29% Similarity=0.349 Sum_probs=45.7
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~ 153 (174)
+++.|++++|++. .+.+..|..+++|++|++++|.+++..|.. +..+++|++|++++|++++..+..+..++
T Consensus 324 ~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 395 (455)
T 3v47_A 324 HLLKLNLSQNFLG----SIDSRMFENLDKLEVLDLSYNHIRALGDQS----FLGLPNLKELALDTNQLKSVPDGIFDRLT 395 (455)
T ss_dssp TCCEEECCSSCCC----EECGGGGTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred cCCEEECCCCccC----CcChhHhcCcccCCEEECCCCcccccChhh----ccccccccEEECCCCccccCCHhHhccCC
Confidence 3444444444333 233344455555555555555555444444 55555555555555555543344455555
Q ss_pred CCCEEEccCCcccccCC
Q 048732 154 SLKHLSLGTNELNGSID 170 (174)
Q Consensus 154 ~L~~L~Ls~N~l~g~iP 170 (174)
+|+.|++++|++++.+|
T Consensus 396 ~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 396 SLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCCEEECCSSCBCCCTT
T ss_pred cccEEEccCCCcccCCC
Confidence 56666666666555555
No 52
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.33 E-value=7.2e-12 Score=97.55 Aligned_cols=89 Identities=25% Similarity=0.303 Sum_probs=52.5
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~ 153 (174)
.++.|++++|++. .+++..|..+++|+.|++++|.+++..+.. |..+++|+.|++++|++++..+..|..++
T Consensus 101 ~L~~L~l~~N~l~----~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 172 (290)
T 1p9a_G 101 ALTVLDVSFNRLT----SLPLGALRGLGELQELYLKGNELKTLPPGL----LTPTPKLEKLSLANNNLTELPAGLLNGLE 172 (290)
T ss_dssp TCCEEECCSSCCC----CCCSSTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECTTSCCSCCCTTTTTTCT
T ss_pred CCCEEECCCCcCc----ccCHHHHcCCCCCCEEECCCCCCCccChhh----cccccCCCEEECCCCcCCccCHHHhcCcC
Confidence 4555555555554 344455666666666666666666433333 56666666666666666644444456666
Q ss_pred CCCEEEccCCcccccCCC
Q 048732 154 SLKHLSLGTNELNGSIDI 171 (174)
Q Consensus 154 ~L~~L~Ls~N~l~g~iP~ 171 (174)
+|+.|+|++|+|+ .||.
T Consensus 173 ~L~~L~L~~N~l~-~ip~ 189 (290)
T 1p9a_G 173 NLDTLLLQENSLY-TIPK 189 (290)
T ss_dssp TCCEEECCSSCCC-CCCT
T ss_pred CCCEEECCCCcCC-ccCh
Confidence 6777777777666 4553
No 53
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.32 E-value=5.1e-12 Score=100.15 Aligned_cols=84 Identities=15% Similarity=0.139 Sum_probs=72.9
Q ss_pred EEEcCCC-CCCCCccccCcccccCCCCCCEEeCcC-CccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCC
Q 048732 77 KLDLAFR-KRDSAEWYMNASLFTPFQQLEFLDLSG-NNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSS 154 (174)
Q Consensus 77 ~L~L~~n-~~~~g~~~~~~~~~~~l~~L~~L~ls~-N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~ 154 (174)
.++++++ ++. .+ |. +..+++|+.|+|++ |.+.+..+.. |.++++|+.|+|++|+|++..|..|..+++
T Consensus 12 ~v~~~~~n~l~----~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 81 (347)
T 2ifg_A 12 GLRCTRDGALD----SL-HH-LPGAENLTELYIENQQHLQHLELRD----LRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81 (347)
T ss_dssp CEECCSSCCCT----TT-TT-SCSCSCCSEEECCSCSSCCEECGGG----SCSCCCCSEEECCSSCCCEECTTGGGSCSC
T ss_pred EEEcCCCCCCC----cc-CC-CCCCCCeeEEEccCCCCCCCcChhH----hccccCCCEEECCCCccceeCHHHhcCCcC
Confidence 4688887 676 44 44 89999999999996 9999666566 999999999999999999988889999999
Q ss_pred CCEEEccCCcccccCCC
Q 048732 155 LKHLSLGTNELNGSIDI 171 (174)
Q Consensus 155 L~~L~Ls~N~l~g~iP~ 171 (174)
|+.|+|++|+|++ +|.
T Consensus 82 L~~L~l~~N~l~~-~~~ 97 (347)
T 2ifg_A 82 LSRLNLSFNALES-LSW 97 (347)
T ss_dssp CCEEECCSSCCSC-CCS
T ss_pred CCEEeCCCCccce-eCH
Confidence 9999999999996 554
No 54
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.30 E-value=8.6e-12 Score=105.44 Aligned_cols=87 Identities=24% Similarity=0.277 Sum_probs=64.8
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
..++.|++++|++. .+.+..|..+++|++|++++|.+.+..|.. |.++++|++|++++|++++..|..|+.+
T Consensus 33 ~~l~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 104 (606)
T 3t6q_A 33 NSTECLEFSFNVLP----TIQNTTFSRLINLTFLDLTRCQIYWIHEDT----FQSQHRLDTLVLTANPLIFMAETALSGP 104 (606)
T ss_dssp TTCCEEECTTCCCS----EECTTTSTTCTTCSEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCSEECTTTTSSC
T ss_pred CcCcEEEccCCccC----cCChhHhccCccceEEECCCCccceeChhh----ccCccccCeeeCCCCcccccChhhhccc
Confidence 57888999988877 455667778888888888888877666666 7777777777777777776666677777
Q ss_pred CCCCEEEccCCcccc
Q 048732 153 SSLKHLSLGTNELNG 167 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~g 167 (174)
++|++|++++|++++
T Consensus 105 ~~L~~L~L~~n~i~~ 119 (606)
T 3t6q_A 105 KALKHLFFIQTGISS 119 (606)
T ss_dssp TTCCEEECTTSCCSC
T ss_pred ccccEeeccccCccc
Confidence 777777777776664
No 55
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.30 E-value=6.6e-12 Score=106.40 Aligned_cols=88 Identities=26% Similarity=0.278 Sum_probs=78.6
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCcc-ccccCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSI-FSSLGG 151 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~-p~~l~~ 151 (174)
..++.|+|++|++. .+ |..+..+++|+.|++++|.+++ +| . ++.+++|+.|+|++|++++.. |..++.
T Consensus 463 ~~L~~L~Ls~N~l~----~l-p~~~~~l~~L~~L~Ls~N~l~~-lp-~----l~~l~~L~~L~Ls~N~l~~~~~p~~l~~ 531 (567)
T 1dce_A 463 LLVTHLDLSHNRLR----AL-PPALAALRCLEVLQASDNALEN-VD-G----VANLPRLQELLLCNNRLQQSAAIQPLVS 531 (567)
T ss_dssp TTCCEEECCSSCCC----CC-CGGGGGCTTCCEEECCSSCCCC-CG-G----GTTCSSCCEEECCSSCCCSSSTTGGGGG
T ss_pred ccCcEeecCccccc----cc-chhhhcCCCCCEEECCCCCCCC-Cc-c----cCCCCCCcEEECCCCCCCCCCCcHHHhc
Confidence 57999999999887 34 4578999999999999999996 67 5 999999999999999999877 999999
Q ss_pred CCCCCEEEccCCcccccCCC
Q 048732 152 LSSLKHLSLGTNELNGSIDI 171 (174)
Q Consensus 152 l~~L~~L~Ls~N~l~g~iP~ 171 (174)
+++|+.|+|++|+|++.+|.
T Consensus 532 l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 532 CPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CTTCCEEECTTSGGGGSSSC
T ss_pred CCCCCEEEecCCcCCCCccH
Confidence 99999999999999986654
No 56
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.30 E-value=2.3e-12 Score=92.11 Aligned_cols=86 Identities=27% Similarity=0.232 Sum_probs=72.6
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCcc-ccccCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSI-FSSLGG 151 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~-p~~l~~ 151 (174)
.+++.|++++|++. .+ ..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|.+++.. +..+..
T Consensus 49 ~~L~~L~l~~n~l~----~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~l~~ 118 (168)
T 2ell_A 49 VNLEFLSLINVGLI----SV--SNLPKLPKLKKLELSENRIFGGLDML----AEKLPNLTHLNLSGNKLKDISTLEPLKK 118 (168)
T ss_dssp GGCCEEEEESSCCC----CC--SSCCCCSSCCEEEEESCCCCSCCCHH----HHHCTTCCEEECBSSSCCSSGGGGGGSS
T ss_pred CCCCEEeCcCCCCC----Ch--hhhccCCCCCEEECcCCcCchHHHHH----HhhCCCCCEEeccCCccCcchhHHHHhc
Confidence 57899999999876 33 56888999999999999999777765 667999999999999998542 278899
Q ss_pred CCCCCEEEccCCccccc
Q 048732 152 LSSLKHLSLGTNELNGS 168 (174)
Q Consensus 152 l~~L~~L~Ls~N~l~g~ 168 (174)
+++|++|++++|++++.
T Consensus 119 l~~L~~L~l~~N~l~~~ 135 (168)
T 2ell_A 119 LECLKSLDLFNCEVTNL 135 (168)
T ss_dssp CSCCCEEECCSSGGGTS
T ss_pred CCCCCEEEeeCCcCcch
Confidence 99999999999999864
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.29 E-value=1.4e-11 Score=95.13 Aligned_cols=42 Identities=26% Similarity=0.233 Sum_probs=18.2
Q ss_pred cCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCccc
Q 048732 125 LSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELN 166 (174)
Q Consensus 125 ~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~ 166 (174)
+..+++|+.|++++|.+++..|..+..+++|+.|++++|+++
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC
Confidence 334444444444444444333444444444444444444444
No 58
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.28 E-value=6.2e-12 Score=100.15 Aligned_cols=101 Identities=18% Similarity=0.267 Sum_probs=86.2
Q ss_pred ccccceEecCC---------CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCC
Q 048732 61 CQWEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNL 131 (174)
Q Consensus 61 C~w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L 131 (174)
|.+..|.|... +..+++|+|++|++. .+++..|.++++|++|++++|.+.+.+|... |.+++++
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~----~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~---f~~L~~l 81 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR----VIQKGAFSGFGDLEKIEISQNDVLEVIEADV---FSNLPKL 81 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCS----EECTTSSTTCTTCCEEEEECCTTCCEECTTS---BCSCTTC
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCC----CcCHHHHcCCCCCCEEECcCCCCCCccChhH---hhcchhh
Confidence 67888999642 247899999999998 6778889999999999999999987887654 8899987
Q ss_pred CE-EeccCCCCCCccccccCCCCCCCEEEccCCccccc
Q 048732 132 KF-LDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGS 168 (174)
Q Consensus 132 ~~-L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ 168 (174)
+. +.++.|+++...|..|..+++|++|++++|++++.
T Consensus 82 ~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~ 119 (350)
T 4ay9_X 82 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL 119 (350)
T ss_dssp CEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSC
T ss_pred hhhhcccCCcccccCchhhhhccccccccccccccccC
Confidence 75 56778999977788899999999999999999853
No 59
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.28 E-value=2e-11 Score=93.76 Aligned_cols=69 Identities=28% Similarity=0.366 Sum_probs=35.6
Q ss_pred ccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccc
Q 048732 95 SLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNG 167 (174)
Q Consensus 95 ~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g 167 (174)
..|..+++|++|++++|.+++..+.. |..+++|++|++++|.+++..+..|+.+++|+.|++++|++++
T Consensus 103 ~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 103 GVFDQLVNLAELRLDRNQLKSLPPRV----FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp TTTTTCSSCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred hHcccccCCCEEECCCCccCeeCHHH----hCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 33444445555555555444333332 4555555555555555554333445555666666666666554
No 60
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.28 E-value=5.6e-12 Score=90.09 Aligned_cols=93 Identities=25% Similarity=0.131 Sum_probs=71.5
Q ss_pred CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccC-cchhhhcCCCCCCCEEeccCCCCCCccc---c
Q 048732 72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQ-NEGLDRLSSLKNLKFLDLTLNHFNNSIF---S 147 (174)
Q Consensus 72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p-~~~~~~~~~l~~L~~L~ls~N~l~g~~p---~ 147 (174)
..+++.|++++|++. ...+..+..+++|+.|++++|.+++..+ .. +..+++|++|++++|.+++..+ .
T Consensus 70 l~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----l~~l~~L~~L~l~~N~l~~~~~~~~~ 141 (168)
T 2ell_A 70 LPKLKKLELSENRIF----GGLDMLAEKLPNLTHLNLSGNKLKDISTLEP----LKKLECLKSLDLFNCEVTNLNDYRES 141 (168)
T ss_dssp CSSCCEEEEESCCCC----SCCCHHHHHCTTCCEEECBSSSCCSSGGGGG----GSSCSCCCEEECCSSGGGTSTTHHHH
T ss_pred CCCCCEEECcCCcCc----hHHHHHHhhCCCCCEEeccCCccCcchhHHH----HhcCCCCCEEEeeCCcCcchHHHHHH
Confidence 357889999999876 2235556678999999999999885321 34 8889999999999999985544 4
Q ss_pred ccCCCCCCCEEEccCCcccccCCCCC
Q 048732 148 SLGGLSSLKHLSLGTNELNGSIDIEG 173 (174)
Q Consensus 148 ~l~~l~~L~~L~Ls~N~l~g~iP~~~ 173 (174)
.+..+++|++|++++|.+. .+|.+.
T Consensus 142 ~~~~l~~L~~L~l~~n~~~-~~~~~~ 166 (168)
T 2ell_A 142 VFKLLPQLTYLDGYDREDQ-EAPDSD 166 (168)
T ss_dssp HHTTCSSCCEETTEETTSC-BCCSSS
T ss_pred HHHhCccCcEecCCCCChh-hccccc
Confidence 7888999999999999887 466543
No 61
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.28 E-value=1.3e-11 Score=104.43 Aligned_cols=71 Identities=20% Similarity=0.256 Sum_probs=37.2
Q ss_pred cccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCC-ccccccCCCCCCCEEEccCCccccc
Q 048732 94 ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNN-SIFSSLGGLSSLKHLSLGTNELNGS 168 (174)
Q Consensus 94 ~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g-~~p~~l~~l~~L~~L~Ls~N~l~g~ 168 (174)
+..|..+++|++|++++|.+.+..+.. ++++++|++|++++|.+++ .+|..++++++|++|++++|++++.
T Consensus 97 p~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 97 PGSFSGLTSLENLVAVETKLASLESFP----IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCSSSSC----CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred hhhcCCcccCCEEEccCCccccccccc----cCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 344444444445555444444333233 5555555555555555553 3455566666666666666666553
No 62
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.27 E-value=2.3e-11 Score=95.94 Aligned_cols=95 Identities=27% Similarity=0.364 Sum_probs=69.4
Q ss_pred ccccceEecCC---------CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCC
Q 048732 61 CQWEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNL 131 (174)
Q Consensus 61 C~w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L 131 (174)
|.|..+.|... ...++.|++++|++. .+++..|..+++|++|++++|.+++..|.. +..+++|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L 104 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDIS----ELRKDDFKGLQHLYALVLVNNKISKIHEKA----FSPLRKL 104 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECGGG----STTCTTC
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCC----ccCHhHhhCCCCCcEEECCCCccCccCHhH----hhCcCCC
Confidence 78999999642 247899999999887 566677888999999999999988766666 7888888
Q ss_pred CEEeccCCCCCCccccccCCCCCCCEEEccCCccc
Q 048732 132 KFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELN 166 (174)
Q Consensus 132 ~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~ 166 (174)
++|++++|+++ .+|..+. ++|++|++++|+++
T Consensus 105 ~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~ 136 (332)
T 2ft3_A 105 QKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIR 136 (332)
T ss_dssp CEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCC
T ss_pred CEEECCCCcCC-ccCcccc--ccCCEEECCCCccC
Confidence 88888888776 4554332 44445555444444
No 63
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.27 E-value=1.7e-11 Score=103.11 Aligned_cols=84 Identities=24% Similarity=0.308 Sum_probs=60.5
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
..++.|++++|++. .+++..|..+++|++|++++|.+++..|.. |..+++|++|++++|+++ .+|.. .+
T Consensus 52 ~~L~~L~Ls~N~i~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~-~lp~~--~l 120 (562)
T 3a79_B 52 PRTKALSLSQNSIS----ELRMPDISFLSELRVLRLSHNRIRSLDFHV----FLFNQDLEYLDVSHNRLQ-NISCC--PM 120 (562)
T ss_dssp TTCCEEECCSSCCC----CCCGGGTTTCTTCCEEECCSCCCCEECTTT----TTTCTTCCEEECTTSCCC-EECSC--CC
T ss_pred CCcCEEECCCCCcc----ccChhhhccCCCccEEECCCCCCCcCCHHH----hCCCCCCCEEECCCCcCC-ccCcc--cc
Confidence 56778888888776 455566777788888888888777665665 777777777777777776 56655 66
Q ss_pred CCCCEEEccCCcccc
Q 048732 153 SSLKHLSLGTNELNG 167 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~g 167 (174)
++|++|++++|++++
T Consensus 121 ~~L~~L~Ls~N~l~~ 135 (562)
T 3a79_B 121 ASLRHLDLSFNDFDV 135 (562)
T ss_dssp TTCSEEECCSSCCSB
T ss_pred ccCCEEECCCCCccc
Confidence 777777777777764
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.26 E-value=1.4e-11 Score=95.99 Aligned_cols=72 Identities=28% Similarity=0.366 Sum_probs=37.8
Q ss_pred ccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCC
Q 048732 95 SLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSID 170 (174)
Q Consensus 95 ~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP 170 (174)
..+..+++|++|++++|.+++..|.. +..+++|+.|++++|++++..+..+..+++|++|++++|++++.+|
T Consensus 169 ~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 169 DIFTELRNLTFLDLSQCQLEQLSPTA----FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred hHHhhCcCCCEEECCCCCcCCcCHHH----hcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence 34455555555555555555443443 5555555555555555554444445555555555555555555443
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.26 E-value=2.3e-11 Score=93.47 Aligned_cols=86 Identities=21% Similarity=0.266 Sum_probs=51.0
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCc-cccccCCC
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNS-IFSSLGGL 152 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~-~p~~l~~l 152 (174)
+++.|++++|++. .+.+..|..+++|++|++++|.+.+..+.. +..+++|++|++++|.+++. +|..++.+
T Consensus 77 ~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~l~~~~~~l 148 (276)
T 2z62_A 77 HLSTLILTGNPIQ----SLALGAFSGLSSLQKLVAVETNLASLENFP----IGHLKTLKELNVAHNLIQSFKLPEYFSNL 148 (276)
T ss_dssp TCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTSCCCCSTTCC----CTTCTTCCEEECCSSCCCCCCCCGGGGGC
T ss_pred CCCEEECCCCccC----ccChhhhcCCccccEEECCCCCccccCchh----cccCCCCCEEECcCCccceecCchhhccC
Confidence 4555555555444 333444555555556666555555433333 66667777777777777642 46667777
Q ss_pred CCCCEEEccCCcccc
Q 048732 153 SSLKHLSLGTNELNG 167 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~g 167 (174)
++|++|++++|++++
T Consensus 149 ~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 149 TNLEHLDLSSNKIQS 163 (276)
T ss_dssp TTCCEEECCSSCCCE
T ss_pred CCCCEEECCCCCCCc
Confidence 777777777777665
No 66
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.26 E-value=1.4e-12 Score=113.42 Aligned_cols=86 Identities=28% Similarity=0.322 Sum_probs=65.3
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~ 153 (174)
.++.|+|++|++. .++.. +..+++|++|+|++|.++ .+|.. +..+++|++|+|++|+|+ .+|..|+.++
T Consensus 225 ~L~~L~Ls~n~l~----~l~~~-~~~l~~L~~L~Ls~N~l~-~lp~~----~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 225 LWHALDLSNLQIF----NISAN-IFKYDFLTRLYLNGNSLT-ELPAE----IKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp CCCEEECTTSCCS----CCCGG-GGGCCSCSCCBCTTSCCS-CCCGG----GGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred CCcEEECCCCCCC----CCChh-hcCCCCCCEEEeeCCcCc-ccChh----hhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 4556666666654 33333 447788888888888887 67766 788888888888888888 7788888888
Q ss_pred CCCEEEccCCcccccCCC
Q 048732 154 SLKHLSLGTNELNGSIDI 171 (174)
Q Consensus 154 ~L~~L~Ls~N~l~g~iP~ 171 (174)
+|++|+|++|.|+ .||.
T Consensus 294 ~L~~L~L~~N~l~-~lp~ 310 (727)
T 4b8c_D 294 QLKYFYFFDNMVT-TLPW 310 (727)
T ss_dssp TCSEEECCSSCCC-CCCS
T ss_pred CCCEEECCCCCCC-ccCh
Confidence 8888888888887 6775
No 67
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.26 E-value=4.7e-11 Score=92.90 Aligned_cols=90 Identities=26% Similarity=0.217 Sum_probs=69.5
Q ss_pred CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCC
Q 048732 72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGG 151 (174)
Q Consensus 72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~ 151 (174)
...++.|++++|++. .+ +..+..+++|+.|++++|.+++..|.. |..+++|++|++++|++++..+..|..
T Consensus 76 l~~L~~L~Ls~N~l~----~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~ 146 (290)
T 1p9a_G 76 LPVLGTLDLSHNQLQ----SL-PLLGQTLPALTVLDVSFNRLTSLPLGA----LRGLGELQELYLKGNELKTLPPGLLTP 146 (290)
T ss_dssp CTTCCEEECCSSCCS----SC-CCCTTTCTTCCEEECCSSCCCCCCSST----TTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred CCcCCEEECCCCcCC----cC-chhhccCCCCCEEECCCCcCcccCHHH----HcCCCCCCEEECCCCCCCccChhhccc
Confidence 346777777777665 23 345678888889999999888655555 888899999999999998666667888
Q ss_pred CCCCCEEEccCCcccccCCC
Q 048732 152 LSSLKHLSLGTNELNGSIDI 171 (174)
Q Consensus 152 l~~L~~L~Ls~N~l~g~iP~ 171 (174)
+++|+.|+|++|+|++ +|.
T Consensus 147 l~~L~~L~L~~N~l~~-l~~ 165 (290)
T 1p9a_G 147 TPKLEKLSLANNNLTE-LPA 165 (290)
T ss_dssp CTTCCEEECTTSCCSC-CCT
T ss_pred ccCCCEEECCCCcCCc-cCH
Confidence 8899999999999884 554
No 68
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.24 E-value=3.8e-11 Score=94.46 Aligned_cols=96 Identities=23% Similarity=0.328 Sum_probs=72.1
Q ss_pred CccccceEecCC---------CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCC
Q 048732 60 CCQWEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKN 130 (174)
Q Consensus 60 ~C~w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~ 130 (174)
.|.+..+.|... ...++.|++++|++. .+++..|..+++|++|++++|.+++..|.. +..+++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~ 101 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKIT----EIKDGDFKNLKNLHTLILINNKISKISPGA----FAPLVK 101 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCC----CBCTTTTTTCTTCCEEECCSSCCCCBCTTT----TTTCTT
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCC----EeChhhhccCCCCCEEECCCCcCCeeCHHH----hcCCCC
Confidence 478999999641 347899999999887 455667889999999999999998776776 888888
Q ss_pred CCEEeccCCCCCCccccccCCCCCCCEEEccCCccc
Q 048732 131 LKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELN 166 (174)
Q Consensus 131 L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~ 166 (174)
|++|++++|+++ .+|..+. ++|++|++++|+++
T Consensus 102 L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~ 134 (330)
T 1xku_A 102 LERLYLSKNQLK-ELPEKMP--KTLQELRVHENEIT 134 (330)
T ss_dssp CCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCC
T ss_pred CCEEECCCCcCC-ccChhhc--ccccEEECCCCccc
Confidence 888888888887 5554432 44555555555544
No 69
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.24 E-value=1.6e-11 Score=88.64 Aligned_cols=87 Identities=21% Similarity=0.180 Sum_probs=70.6
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCcccc--ccC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFS--SLG 150 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~--~l~ 150 (174)
..++.|++++|++. .+ ..+..+++|++|++++|.+++ +|+.. +..+++|++|++++|+++ .+|. .+.
T Consensus 42 ~~L~~L~Ls~N~l~----~~--~~l~~l~~L~~L~Ls~N~l~~-~~~~~---~~~l~~L~~L~L~~N~i~-~~~~~~~l~ 110 (176)
T 1a9n_A 42 DQFDAIDFSDNEIR----KL--DGFPLLRRLKTLLVNNNRICR-IGEGL---DQALPDLTELILTNNSLV-ELGDLDPLA 110 (176)
T ss_dssp TCCSEEECCSSCCC----EE--CCCCCCSSCCEEECCSSCCCE-ECSCH---HHHCTTCCEEECCSCCCC-CGGGGGGGG
T ss_pred CCCCEEECCCCCCC----cc--cccccCCCCCEEECCCCcccc-cCcch---hhcCCCCCEEECCCCcCC-cchhhHhhh
Confidence 37889999999876 33 457889999999999999985 45431 578999999999999996 6776 788
Q ss_pred CCCCCCEEEccCCcccccCCC
Q 048732 151 GLSSLKHLSLGTNELNGSIDI 171 (174)
Q Consensus 151 ~l~~L~~L~Ls~N~l~g~iP~ 171 (174)
.+++|++|++++|+++ .+|.
T Consensus 111 ~l~~L~~L~l~~N~i~-~~~~ 130 (176)
T 1a9n_A 111 SLKSLTYLCILRNPVT-NKKH 130 (176)
T ss_dssp GCTTCCEEECCSSGGG-GSTT
T ss_pred cCCCCCEEEecCCCCC-CcHh
Confidence 9999999999999987 4553
No 70
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.23 E-value=3.8e-12 Score=110.66 Aligned_cols=88 Identities=24% Similarity=0.263 Sum_probs=79.6
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
..++.|+|++|++. .+ |..|..+++|++|+|++|.++ .+|.. ++.+++|++|+|++|.|+ .+|..|+.+
T Consensus 247 ~~L~~L~Ls~N~l~----~l-p~~~~~l~~L~~L~Ls~N~l~-~lp~~----~~~l~~L~~L~L~~N~l~-~lp~~~~~l 315 (727)
T 4b8c_D 247 DFLTRLYLNGNSLT----EL-PAEIKNLSNLRVLDLSHNRLT-SLPAE----LGSCFQLKYFYFFDNMVT-TLPWEFGNL 315 (727)
T ss_dssp CSCSCCBCTTSCCS----CC-CGGGGGGTTCCEEECTTSCCS-SCCSS----GGGGTTCSEEECCSSCCC-CCCSSTTSC
T ss_pred CCCCEEEeeCCcCc----cc-ChhhhCCCCCCEEeCcCCcCC-ccChh----hcCCCCCCEEECCCCCCC-ccChhhhcC
Confidence 57899999999887 34 456899999999999999999 78888 999999999999999998 889999999
Q ss_pred CCCCEEEccCCcccccCCC
Q 048732 153 SSLKHLSLGTNELNGSIDI 171 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~g~iP~ 171 (174)
++|++|+|++|+|+|.+|.
T Consensus 316 ~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 316 CNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp TTCCCEECTTSCCCSHHHH
T ss_pred CCccEEeCCCCccCCCChH
Confidence 9999999999999987763
No 71
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.23 E-value=3.7e-11 Score=102.03 Aligned_cols=89 Identities=19% Similarity=0.141 Sum_probs=59.4
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~ 153 (174)
.++.|+|++|++. .+++..|..+++|+.|++++|.+++..|.. |+.+++|++|+|++|.+++..+..|+.++
T Consensus 76 ~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 147 (597)
T 3oja_B 76 QVELLNLNDLQIE----EIDTYAFAYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLERNDLSSLPRGIFHNTP 147 (597)
T ss_dssp CCSEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCcEEECCCCCCC----CCChHHhcCCCCCCEEECCCCcCCCCCHHH----HcCCCCCCEEEeeCCCCCCCCHHHhccCC
Confidence 4667777777665 344556777777777777777777655544 66777777777777777744444456777
Q ss_pred CCCEEEccCCcccccCC
Q 048732 154 SLKHLSLGTNELNGSID 170 (174)
Q Consensus 154 ~L~~L~Ls~N~l~g~iP 170 (174)
+|++|+|++|.+++..|
T Consensus 148 ~L~~L~Ls~N~l~~~~~ 164 (597)
T 3oja_B 148 KLTTLSMSNNNLERIED 164 (597)
T ss_dssp TCCEEECCSSCCCBCCT
T ss_pred CCCEEEeeCCcCCCCCh
Confidence 77777777777776444
No 72
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.23 E-value=4e-11 Score=101.33 Aligned_cols=91 Identities=23% Similarity=0.263 Sum_probs=76.2
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
.+++.|+|++|++. .+.+..|..+++|++|++++|.+.+..|.. ++.+++|++|++++|++++..|..++.+
T Consensus 57 ~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~i~~l~~~~~~~l 128 (606)
T 3t6q_A 57 INLTFLDLTRCQIY----WIHEDTFQSQHRLDTLVLTANPLIFMAETA----LSGPKALKHLFFIQTGISSIDFIPLHNQ 128 (606)
T ss_dssp TTCSEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCSEECTTT----TSSCTTCCEEECTTSCCSCGGGSCCTTC
T ss_pred ccceEEECCCCccc----eeChhhccCccccCeeeCCCCcccccChhh----hcccccccEeeccccCcccCCcchhccC
Confidence 57889999999877 566778899999999999999998777776 8889999999999999987667788888
Q ss_pred CCCCEEEccCCcccc-cCCC
Q 048732 153 SSLKHLSLGTNELNG-SIDI 171 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~g-~iP~ 171 (174)
++|++|++++|++++ .+|.
T Consensus 129 ~~L~~L~L~~n~l~~~~~~~ 148 (606)
T 3t6q_A 129 KTLESLYLGSNHISSIKLPK 148 (606)
T ss_dssp TTCCEEECCSSCCCCCCCCT
T ss_pred CcccEEECCCCcccccCccc
Confidence 899999999998886 3343
No 73
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.22 E-value=2.2e-11 Score=104.28 Aligned_cols=94 Identities=22% Similarity=0.184 Sum_probs=51.5
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcch--------------------hhhcCCCCCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEG--------------------LDRLSSLKNLK 132 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~--------------------~~~~~~l~~L~ 132 (174)
.+++.|+|++|++. .+++..|..+++|++|++++|.+++..|... ...|+.+++|+
T Consensus 25 ~~l~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 25 TNITVLNLTHNQLR----RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT 100 (680)
T ss_dssp TTCSEEECCSSCCC----CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred CCCcEEECCCCCCC----CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCC
Confidence 45666666666655 2333344444444444444444443333320 00155666666
Q ss_pred EEeccCCCCCCccccccCCCCCCCEEEccCCcccccCC
Q 048732 133 FLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSID 170 (174)
Q Consensus 133 ~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP 170 (174)
+|++++|++++..|..|+.+++|++|++++|++++..|
T Consensus 101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 138 (680)
T 1ziw_A 101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL 138 (680)
T ss_dssp EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCC
T ss_pred EEECCCCccCccChhHccccCCCCEEECCCCcccccCc
Confidence 66666666665555566666666666666666665444
No 74
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.22 E-value=1.6e-11 Score=103.97 Aligned_cols=85 Identities=26% Similarity=0.328 Sum_probs=75.9
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~ 153 (174)
.++.|+|++|++. .+ |. +..+++|+.|++++|.++ .+|.. ++.+++|+.|+|++|++++ +| .++.++
T Consensus 442 ~L~~L~Ls~n~l~----~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~----~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~ 508 (567)
T 1dce_A 442 DVRVLHLAHKDLT----VL-CH-LEQLLLVTHLDLSHNRLR-ALPPA----LAALRCLEVLQASDNALEN-VD-GVANLP 508 (567)
T ss_dssp TCSEEECTTSCCS----SC-CC-GGGGTTCCEEECCSSCCC-CCCGG----GGGCTTCCEEECCSSCCCC-CG-GGTTCS
T ss_pred CceEEEecCCCCC----CC-cC-ccccccCcEeecCccccc-ccchh----hhcCCCCCEEECCCCCCCC-Cc-ccCCCC
Confidence 4788999999887 34 34 899999999999999999 78887 9999999999999999996 77 899999
Q ss_pred CCCEEEccCCcccccC-CC
Q 048732 154 SLKHLSLGTNELNGSI-DI 171 (174)
Q Consensus 154 ~L~~L~Ls~N~l~g~i-P~ 171 (174)
+|+.|+|++|+|++.+ |.
T Consensus 509 ~L~~L~Ls~N~l~~~~~p~ 527 (567)
T 1dce_A 509 RLQELLLCNNRLQQSAAIQ 527 (567)
T ss_dssp SCCEEECCSSCCCSSSTTG
T ss_pred CCcEEECCCCCCCCCCCcH
Confidence 9999999999999865 53
No 75
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.22 E-value=5.1e-11 Score=95.81 Aligned_cols=86 Identities=19% Similarity=0.145 Sum_probs=48.7
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~ 153 (174)
+++.|++++|++. .+++..|..+++|++|++++|.+++..|.. ++.+++|++|++++|+++...+..|+.++
T Consensus 70 ~L~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 141 (390)
T 3o6n_A 70 QVELLNLNDLQIE----EIDTYAFAYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLERNDLSSLPRGIFHNTP 141 (390)
T ss_dssp CCSEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCcEEECCCCccc----ccChhhccCCCCcCEEECCCCCCCcCCHHH----hcCCCCCCEEECCCCccCcCCHHHhcCCC
Confidence 4556666665554 344445666666666666666666544444 55666666666666666532223345566
Q ss_pred CCCEEEccCCcccc
Q 048732 154 SLKHLSLGTNELNG 167 (174)
Q Consensus 154 ~L~~L~Ls~N~l~g 167 (174)
+|++|++++|++++
T Consensus 142 ~L~~L~L~~n~l~~ 155 (390)
T 3o6n_A 142 KLTTLSMSNNNLER 155 (390)
T ss_dssp TCCEEECCSSCCCB
T ss_pred CCcEEECCCCccCc
Confidence 66666666666654
No 76
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.22 E-value=2e-11 Score=101.96 Aligned_cols=91 Identities=25% Similarity=0.358 Sum_probs=67.5
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCC-ccccccCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNN-SIFSSLGG 151 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g-~~p~~l~~ 151 (174)
.+++.|++++|++. .+++..|..+++|++|++++|.+++..|.. ++.+++|++|++++|++++ .+|..++.
T Consensus 50 ~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 121 (549)
T 2z81_A 50 ANLQVLILKSSRIN----TIEGDAFYSLGSLEHLDLSDNHLSSLSSSW----FGPLSSLKYLNLMGNPYQTLGVTSLFPN 121 (549)
T ss_dssp TTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTSCCCSCCHHH----HTTCTTCCEEECTTCCCSSSCSSCSCTT
T ss_pred CcccEEECCCCCcC----ccChhhccccccCCEEECCCCccCccCHHH----hccCCCCcEEECCCCcccccchhhhhhc
Confidence 56888888888776 455667788888888888888887655544 7788888888888888875 35667777
Q ss_pred CCCCCEEEccCCcccccCCC
Q 048732 152 LSSLKHLSLGTNELNGSIDI 171 (174)
Q Consensus 152 l~~L~~L~Ls~N~l~g~iP~ 171 (174)
+++|++|++++|++.+.+|.
T Consensus 122 l~~L~~L~L~~n~~~~~~~~ 141 (549)
T 2z81_A 122 LTNLQTLRIGNVETFSEIRR 141 (549)
T ss_dssp CTTCCEEEEEESSSCCEECT
T ss_pred cCCccEEECCCCccccccCH
Confidence 77788888877775555654
No 77
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.21 E-value=1.6e-11 Score=102.12 Aligned_cols=84 Identities=23% Similarity=0.240 Sum_probs=45.6
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
.+++.|++++|++. .+++..|..+++|++|++++|.+++..|.. |..+++|++|++++|+++ .+|.. .+
T Consensus 21 ~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~-~lp~~--~l 89 (520)
T 2z7x_B 21 QKTTILNISQNYIS----ELWTSDILSLSKLRILIISHNRIQYLDISV----FKFNQELEYLDLSHNKLV-KISCH--PT 89 (520)
T ss_dssp TTCSEEECCSSCCC----CCCHHHHTTCTTCCEEECCSSCCCEEEGGG----GTTCTTCCEEECCSSCCC-EEECC--CC
T ss_pred ccccEEECCCCccc----ccChhhccccccccEEecCCCccCCcChHH----hhcccCCCEEecCCCcee-ecCcc--cc
Confidence 35556666666554 233444555556666666666555444444 555555555555555555 44443 45
Q ss_pred CCCCEEEccCCcccc
Q 048732 153 SSLKHLSLGTNELNG 167 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~g 167 (174)
++|++|++++|++++
T Consensus 90 ~~L~~L~L~~N~l~~ 104 (520)
T 2z7x_B 90 VNLKHLDLSFNAFDA 104 (520)
T ss_dssp CCCSEEECCSSCCSS
T ss_pred CCccEEeccCCcccc
Confidence 555555555555554
No 78
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.21 E-value=4.5e-11 Score=98.41 Aligned_cols=87 Identities=23% Similarity=0.232 Sum_probs=47.1
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
.+++.|+|++|++. .+.+..|..+++|++|++++|.+++..+.. |.++++|++|++++|++++..|..|..+
T Consensus 56 ~~L~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 127 (477)
T 2id5_A 56 PHLEELELNENIVS----AVEPGAFNNLFNLRTLGLRSNRLKLIPLGV----FTGLSNLTKLDISENKIVILLDYMFQDL 127 (477)
T ss_dssp TTCCEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCSCCTTS----STTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred CCCCEEECCCCccC----EeChhhhhCCccCCEEECCCCcCCccCccc----ccCCCCCCEEECCCCccccCChhHcccc
Confidence 35666666666554 333445555666666666666555322222 4555555555555555555445555555
Q ss_pred CCCCEEEccCCcccc
Q 048732 153 SSLKHLSLGTNELNG 167 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~g 167 (174)
++|++|++++|++++
T Consensus 128 ~~L~~L~l~~n~l~~ 142 (477)
T 2id5_A 128 YNLKSLEVGDNDLVY 142 (477)
T ss_dssp TTCCEEEECCTTCCE
T ss_pred ccCCEEECCCCccce
Confidence 555555555555544
No 79
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.21 E-value=3e-11 Score=101.15 Aligned_cols=91 Identities=24% Similarity=0.278 Sum_probs=53.6
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~ 153 (174)
.++.|++++|++..+. .+..+..+++|+.|++++|.+++..|.. +..+++|++|++++|++++..|..+..++
T Consensus 446 ~L~~L~l~~n~l~~~~---~p~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 518 (570)
T 2z63_A 446 SLEVLKMAGNSFQENF---LPDIFTELRNLTFLDLSQCQLEQLSPTA----FNSLSSLQVLNMASNQLKSVPDGIFDRLT 518 (570)
T ss_dssp TCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred cCcEEECcCCcCcccc---chhhhhcccCCCEEECCCCccccCChhh----hhcccCCCEEeCCCCcCCCCCHHHhhccc
Confidence 3445555554432111 1344556666666666666666555554 66666666666666666665555666666
Q ss_pred CCCEEEccCCcccccCCC
Q 048732 154 SLKHLSLGTNELNGSIDI 171 (174)
Q Consensus 154 ~L~~L~Ls~N~l~g~iP~ 171 (174)
+|+.|++++|++++.+|.
T Consensus 519 ~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 519 SLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TCCEEECCSSCBCCCTTT
T ss_pred CCcEEEecCCcccCCCcc
Confidence 666666666666666553
No 80
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.20 E-value=2.6e-11 Score=88.98 Aligned_cols=86 Identities=17% Similarity=0.272 Sum_probs=46.9
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
..++.|++++|++. ...+..+..+++|++|++++|.+++..|.. +..+++|++|++++|++.+.+| .+..+
T Consensus 88 ~~L~~L~l~~n~l~----~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~----l~~l~~L~~L~L~~n~~i~~~~-~l~~l 158 (197)
T 4ezg_A 88 SNLERLRIMGKDVT----SDKIPNLSGLTSLTLLDISHSAHDDSILTK----INTLPKVNSIDLSYNGAITDIM-PLKTL 158 (197)
T ss_dssp TTCCEEEEECTTCB----GGGSCCCTTCTTCCEEECCSSBCBGGGHHH----HTTCSSCCEEECCSCTBCCCCG-GGGGC
T ss_pred CCCCEEEeECCccC----cccChhhcCCCCCCEEEecCCccCcHhHHH----HhhCCCCCEEEccCCCCccccH-hhcCC
Confidence 34555555555443 112334555666666666666665544444 5566666666666665222444 45566
Q ss_pred CCCCEEEccCCcccc
Q 048732 153 SSLKHLSLGTNELNG 167 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~g 167 (174)
++|+.|++++|++++
T Consensus 159 ~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 159 PELKSLNIQFDGVHD 173 (197)
T ss_dssp SSCCEEECTTBCCCC
T ss_pred CCCCEEECCCCCCcC
Confidence 666666666666654
No 81
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.20 E-value=5e-11 Score=93.79 Aligned_cols=88 Identities=22% Similarity=0.244 Sum_probs=72.5
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
..++.|++++|++. .+.+..+..+++|+.|++++|.+++..+.. +..+++|+.|++++|+++ .+|..+..+
T Consensus 192 ~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~-~lp~~l~~l 262 (330)
T 1xku_A 192 PSLTELHLDGNKIT----KVDAASLKGLNNLAKLGLSFNSISAVDNGS----LANTPHLRELHLNNNKLV-KVPGGLADH 262 (330)
T ss_dssp TTCSEEECTTSCCC----EECTGGGTTCTTCCEEECCSSCCCEECTTT----GGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred ccCCEEECCCCcCC----ccCHHHhcCCCCCCEEECCCCcCceeChhh----ccCCCCCCEEECCCCcCc-cCChhhccC
Confidence 46777888887766 445667888999999999999998766655 888899999999999998 788888899
Q ss_pred CCCCEEEccCCcccccCC
Q 048732 153 SSLKHLSLGTNELNGSID 170 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~g~iP 170 (174)
++|++|++++|+|++ +|
T Consensus 263 ~~L~~L~l~~N~i~~-~~ 279 (330)
T 1xku_A 263 KYIQVVYLHNNNISA-IG 279 (330)
T ss_dssp SSCCEEECCSSCCCC-CC
T ss_pred CCcCEEECCCCcCCc-cC
Confidence 999999999999885 44
No 82
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.19 E-value=5.1e-11 Score=101.97 Aligned_cols=88 Identities=20% Similarity=0.234 Sum_probs=70.9
Q ss_pred cEEEEEcCCCCCCCCccccCccccc--CCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEec------cCCCCCCcc
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFT--PFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDL------TLNHFNNSI 145 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~--~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~l------s~N~l~g~~ 145 (174)
.++.|+|++|++. .++ ..+. .+++|+.|++++|.+++ +|.. +..+++|+.|++ ++|++.+.+
T Consensus 489 ~L~~L~Ls~N~l~----~lp-~~~~~~~l~~L~~L~Ls~N~l~~-ip~~----~~~l~~L~~L~Ls~N~~ls~N~l~~~~ 558 (636)
T 4eco_A 489 LLTSIDLRFNKLT----KLS-DDFRATTLPYLVGIDLSYNSFSK-FPTQ----PLNSSTLKGFGIRNQRDAQGNRTLREW 558 (636)
T ss_dssp GCCEEECCSSCCC----BCC-GGGSTTTCTTCCEEECCSSCCSS-CCCG----GGGCSSCCEEECCSCBCTTCCBCCCCC
T ss_pred CccEEECcCCcCC----ccC-hhhhhccCCCcCEEECCCCCCCC-cChh----hhcCCCCCEEECCCCcccccCcccccC
Confidence 6778888888776 343 3344 88899999999999887 7877 778899999988 567788888
Q ss_pred ccccCCCCCCCEEEccCCcccccCCCC
Q 048732 146 FSSLGGLSSLKHLSLGTNELNGSIDIE 172 (174)
Q Consensus 146 p~~l~~l~~L~~L~Ls~N~l~g~iP~~ 172 (174)
|..++.+++|+.|+|++|++ +.||..
T Consensus 559 p~~l~~l~~L~~L~Ls~N~l-~~ip~~ 584 (636)
T 4eco_A 559 PEGITLCPSLTQLQIGSNDI-RKVNEK 584 (636)
T ss_dssp CTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred hHHHhcCCCCCEEECCCCcC-CccCHh
Confidence 98898899999999999999 678864
No 83
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.18 E-value=4.2e-11 Score=87.84 Aligned_cols=88 Identities=20% Similarity=0.288 Sum_probs=72.5
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
.+++.|++++|.+. . ...+..+++|++|++++|.+++..|.. +..+++|++|++++|++++..|..++.+
T Consensus 66 ~~L~~L~l~~n~~~----~--~~~l~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~Ls~n~i~~~~~~~l~~l 135 (197)
T 4ezg_A 66 HNIKDLTINNIHAT----N--YNPISGLSNLERLRIMGKDVTSDKIPN----LSGLTSLTLLDISHSAHDDSILTKINTL 135 (197)
T ss_dssp TTCSEEEEESCCCS----C--CGGGTTCTTCCEEEEECTTCBGGGSCC----CTTCTTCCEEECCSSBCBGGGHHHHTTC
T ss_pred CCCCEEEccCCCCC----c--chhhhcCCCCCEEEeECCccCcccChh----hcCCCCCCEEEecCCccCcHhHHHHhhC
Confidence 47889999988554 1 235788999999999999998777776 8899999999999999998888889999
Q ss_pred CCCCEEEccCCcccccCC
Q 048732 153 SSLKHLSLGTNELNGSID 170 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~g~iP 170 (174)
++|++|++++|++.+.+|
T Consensus 136 ~~L~~L~L~~n~~i~~~~ 153 (197)
T 4ezg_A 136 PKVNSIDLSYNGAITDIM 153 (197)
T ss_dssp SSCCEEECCSCTBCCCCG
T ss_pred CCCCEEEccCCCCccccH
Confidence 999999999998333455
No 84
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.18 E-value=7.2e-11 Score=100.24 Aligned_cols=87 Identities=21% Similarity=0.311 Sum_probs=77.0
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
..++.|+|++|++. .+++..|..+++|++|++++|.+++..+.. |+.+++|++|++++|.+++..|..|+.+
T Consensus 99 ~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 170 (597)
T 3oja_B 99 HTIQKLYMGFNAIR----YLPPHVFQNVPLLTVLVLERNDLSSLPRGI----FHNTPKLTTLSMSNNNLERIEDDTFQAT 170 (597)
T ss_dssp TTCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred CCCCEEECCCCcCC----CCCHHHHcCCCCCCEEEeeCCCCCCCCHHH----hccCCCCCEEEeeCCcCCCCChhhhhcC
Confidence 47999999999887 566778899999999999999999544443 7899999999999999998888899999
Q ss_pred CCCCEEEccCCcccc
Q 048732 153 SSLKHLSLGTNELNG 167 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~g 167 (174)
++|++|++++|.+++
T Consensus 171 ~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 171 TSLQNLQLSSNRLTH 185 (597)
T ss_dssp TTCCEEECTTSCCSB
T ss_pred CcCcEEECcCCCCCC
Confidence 999999999999986
No 85
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.18 E-value=4.7e-11 Score=99.26 Aligned_cols=92 Identities=20% Similarity=0.148 Sum_probs=66.4
Q ss_pred CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCcccc--ccCcchhhhcCCCCCCCEEeccCCCCCCccccc-
Q 048732 72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITG--CVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSS- 148 (174)
Q Consensus 72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g--~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~- 148 (174)
...++.|++++|++. ...+..+..+++|+.|++++|.+++ .+|.. +..+++|++|++++|.+++.+|..
T Consensus 323 l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~----~~~l~~L~~L~Ls~N~l~~~l~~~~ 394 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLT----DTVFENCGHLTELETLILQMNQLKELSKIAEM----TTQMKSLQQLDISQNSVSYDEKKGD 394 (520)
T ss_dssp CCCCCEEECCSSCCC----TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHH----HTTCTTCCEEECCSSCCBCCGGGCS
T ss_pred CCcccEEEeECCccC----hhhhhhhccCCCCCEEEccCCccCccccchHH----HhhCCCCCEEECCCCcCCcccccch
Confidence 356788888888776 2225567778888888888888875 44444 777888888888888888656653
Q ss_pred cCCCCCCCEEEccCCcccccCCC
Q 048732 149 LGGLSSLKHLSLGTNELNGSIDI 171 (174)
Q Consensus 149 l~~l~~L~~L~Ls~N~l~g~iP~ 171 (174)
+..+++|++|++++|++++.+|.
T Consensus 395 ~~~l~~L~~L~Ls~N~l~~~~~~ 417 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSNILTDTIFR 417 (520)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGG
T ss_pred hccCccCCEEECcCCCCCcchhh
Confidence 67777777777777777766654
No 86
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.18 E-value=7.1e-11 Score=98.85 Aligned_cols=86 Identities=22% Similarity=0.276 Sum_probs=42.2
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~ 153 (174)
.++.|++++|++. .+++..|..+++|++|++++|.+++..|.. |..+++|++|++++|++++..+..++.++
T Consensus 53 ~L~~L~Ls~n~i~----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 124 (570)
T 2z63_A 53 ELQVLDLSRCEIQ----TIEDGAYQSLSHLSTLILTGNPIQSLALGA----FSGLSSLQKLVAVETNLASLENFPIGHLK 124 (570)
T ss_dssp SCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTSCCCCSTTCSCTTCT
T ss_pred CceEEECCCCcCC----ccCcccccCchhCCEEeCcCCcCCccCHhh----hcCccccccccccccccccCCCccccccc
Confidence 3444444444333 233344445555555555555554333333 55555555555555555533333455555
Q ss_pred CCCEEEccCCcccc
Q 048732 154 SLKHLSLGTNELNG 167 (174)
Q Consensus 154 ~L~~L~Ls~N~l~g 167 (174)
+|++|++++|.+++
T Consensus 125 ~L~~L~L~~n~l~~ 138 (570)
T 2z63_A 125 TLKELNVAHNLIQS 138 (570)
T ss_dssp TCCEEECCSSCCCC
T ss_pred cccEEecCCCccce
Confidence 66666666665554
No 87
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.18 E-value=9.7e-11 Score=94.14 Aligned_cols=88 Identities=20% Similarity=0.312 Sum_probs=75.7
Q ss_pred CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCC
Q 048732 72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGG 151 (174)
Q Consensus 72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~ 151 (174)
..+++.|++++|++. .+++..|..+++|++|++++|.++ .+|... +..+++|++|++++|.+++..|..++.
T Consensus 92 l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~~ 163 (390)
T 3o6n_A 92 AHTIQKLYMGFNAIR----YLPPHVFQNVPLLTVLVLERNDLS-SLPRGI---FHNTPKLTTLSMSNNNLERIEDDTFQA 163 (390)
T ss_dssp CTTCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCC-CCCTTT---TTTCTTCCEEECCSSCCCBCCTTTTSS
T ss_pred CCCcCEEECCCCCCC----cCCHHHhcCCCCCCEEECCCCccC-cCCHHH---hcCCCCCcEEECCCCccCccChhhccC
Confidence 357899999999887 456777899999999999999998 455542 688999999999999999877888999
Q ss_pred CCCCCEEEccCCcccc
Q 048732 152 LSSLKHLSLGTNELNG 167 (174)
Q Consensus 152 l~~L~~L~Ls~N~l~g 167 (174)
+++|++|++++|++++
T Consensus 164 l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 164 TTSLQNLQLSSNRLTH 179 (390)
T ss_dssp CTTCCEEECCSSCCSB
T ss_pred CCCCCEEECCCCcCCc
Confidence 9999999999999885
No 88
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.17 E-value=7.8e-11 Score=100.90 Aligned_cols=90 Identities=23% Similarity=0.261 Sum_probs=72.3
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
..++.|+|++|++. .+++..|..+++|++|++++|.+.+..|.. |+.+++|++|++++|.+++..|..++.+
T Consensus 73 ~~L~~L~L~~n~l~----~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 144 (680)
T 1ziw_A 73 PMLKVLNLQHNELS----QLSDKTFAFCTNLTELHLMSNSIQKIKNNP----FVKQKNLITLDLSHNGLSSTKLGTQVQL 144 (680)
T ss_dssp TTCCEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCCCCSCT----TTTCTTCCEEECCSSCCSCCCCCSSSCC
T ss_pred cCcCEEECCCCccC----ccChhhhccCCCCCEEECCCCccCccChhH----ccccCCCCEEECCCCcccccCchhhccc
Confidence 45778888887776 455667888899999999999887655555 8889999999999999988888888888
Q ss_pred CCCCEEEccCCcccccCC
Q 048732 153 SSLKHLSLGTNELNGSID 170 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~g~iP 170 (174)
++|++|++++|++++..|
T Consensus 145 ~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 145 ENLQELLLSNNKIQALKS 162 (680)
T ss_dssp TTCCEEECCSSCCCCBCH
T ss_pred ccCCEEEccCCcccccCH
Confidence 889999998888876443
No 89
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.17 E-value=9.8e-12 Score=97.44 Aligned_cols=85 Identities=20% Similarity=0.176 Sum_probs=44.0
Q ss_pred cEEEEEcCCCCCCCCccccCcccc--cCCCCCCEEeCcCCccccccCcchhhhcCCC-----CCCCEEeccCCCCCCccc
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLF--TPFQQLEFLDLSGNNITGCVQNEGLDRLSSL-----KNLKFLDLTLNHFNNSIF 146 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~--~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l-----~~L~~L~ls~N~l~g~~p 146 (174)
+++.|++++|++. +. + +..+ ..+++|++|++++|.+++. |.. +..+ ++|++|++++|++++..|
T Consensus 96 ~L~~L~L~~n~l~-~~--~-~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~----~~~l~~~~~~~L~~L~L~~N~l~~~~~ 166 (312)
T 1wwl_A 96 GLQELTLENLEVT-GT--A-PPPLLEATGPDLNILNLRNVSWATR-DAW----LAELQQWLKPGLKVLSIAQAHSLNFSC 166 (312)
T ss_dssp CCCEEEEEEEBCB-SC--C-CCCSSSCCSCCCSEEEEESCBCSSS-SSH----HHHHHTTCCTTCCEEEEESCSCCCCCT
T ss_pred CccEEEccCCccc-ch--h-HHHHHHhcCCCccEEEccCCCCcch-hHH----HHHHHHhhcCCCcEEEeeCCCCccchH
Confidence 4556666665544 11 1 2222 5556666666666666544 433 3332 555555555555555444
Q ss_pred cccCCCCCCCEEEccCCcccc
Q 048732 147 SSLGGLSSLKHLSLGTNELNG 167 (174)
Q Consensus 147 ~~l~~l~~L~~L~Ls~N~l~g 167 (174)
..|+.+++|++|++++|++.|
T Consensus 167 ~~~~~l~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 167 EQVRVFPALSTLDLSDNPELG 187 (312)
T ss_dssp TTCCCCSSCCEEECCSCTTCH
T ss_pred HHhccCCCCCEEECCCCCcCc
Confidence 555555555555555555544
No 90
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.16 E-value=5.7e-11 Score=85.62 Aligned_cols=87 Identities=24% Similarity=0.179 Sum_probs=70.4
Q ss_pred CCcEEEEEcCCCCCCCCccccCcccccCCC-CCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccC
Q 048732 72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQ-QLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLG 150 (174)
Q Consensus 72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~-~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~ 150 (174)
...++.|++++|++. .+ +. +..+. +|+.|++++|.+++. .. +..+++|++|++++|++++..|..+.
T Consensus 18 ~~~L~~L~l~~n~l~----~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~----l~~l~~L~~L~Ls~N~l~~~~~~~~~ 85 (176)
T 1a9n_A 18 AVRDRELDLRGYKIP----VI-EN-LGATLDQFDAIDFSDNEIRKL--DG----FPLLRRLKTLLVNNNRICRIGEGLDQ 85 (176)
T ss_dssp TTSCEEEECTTSCCC----SC-CC-GGGGTTCCSEEECCSSCCCEE--CC----CCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred cCCceEEEeeCCCCc----hh-HH-hhhcCCCCCEEECCCCCCCcc--cc----cccCCCCCEEECCCCcccccCcchhh
Confidence 357899999999887 33 33 44444 999999999999964 34 89999999999999999954445558
Q ss_pred CCCCCCEEEccCCcccccCCC
Q 048732 151 GLSSLKHLSLGTNELNGSIDI 171 (174)
Q Consensus 151 ~l~~L~~L~Ls~N~l~g~iP~ 171 (174)
.+++|++|++++|+|+ .+|.
T Consensus 86 ~l~~L~~L~L~~N~i~-~~~~ 105 (176)
T 1a9n_A 86 ALPDLTELILTNNSLV-ELGD 105 (176)
T ss_dssp HCTTCCEEECCSCCCC-CGGG
T ss_pred cCCCCCEEECCCCcCC-cchh
Confidence 9999999999999996 4553
No 91
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.16 E-value=9.7e-11 Score=95.78 Aligned_cols=85 Identities=25% Similarity=0.305 Sum_probs=67.0
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
..++.|++++|++. .++ .+..+++|+.|++++|.+++..|.. |..+++|+.|++++|++++..|..|..+
T Consensus 185 ~~L~~L~L~~n~l~----~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l 254 (440)
T 3zyj_A 185 SNLRYLNLAMCNLR----EIP--NLTPLIKLDELDLSGNHLSAIRPGS----FQGLMHLQKLWMIQSQIQVIERNAFDNL 254 (440)
T ss_dssp SSCCEEECTTSCCS----SCC--CCTTCSSCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTSSTTC
T ss_pred cccCeecCCCCcCc----ccc--ccCCCcccCEEECCCCccCccChhh----hccCccCCEEECCCCceeEEChhhhcCC
Confidence 46888899988776 332 3677888888888888888666666 7888888888888888887777788888
Q ss_pred CCCCEEEccCCcccc
Q 048732 153 SSLKHLSLGTNELNG 167 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~g 167 (174)
++|+.|+|++|++++
T Consensus 255 ~~L~~L~L~~N~l~~ 269 (440)
T 3zyj_A 255 QSLVEINLAHNNLTL 269 (440)
T ss_dssp TTCCEEECTTSCCCC
T ss_pred CCCCEEECCCCCCCc
Confidence 888888888888874
No 92
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.15 E-value=4.4e-11 Score=94.27 Aligned_cols=86 Identities=24% Similarity=0.248 Sum_probs=71.7
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
..++.|++++|++. .+.+..+..+++|+.|++++|.+.+..+.. +..+++|+.|++++|+++ .+|..+..+
T Consensus 193 ~~L~~L~l~~n~i~----~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~-~lp~~l~~l 263 (332)
T 2ft3_A 193 ETLNELHLDHNKIQ----AIELEDLLRYSKLYRLGLGHNQIRMIENGS----LSFLPTLRELHLDNNKLS-RVPAGLPDL 263 (332)
T ss_dssp SSCSCCBCCSSCCC----CCCTTSSTTCTTCSCCBCCSSCCCCCCTTG----GGGCTTCCEEECCSSCCC-BCCTTGGGC
T ss_pred CCCCEEECCCCcCC----ccCHHHhcCCCCCCEEECCCCcCCcCChhH----hhCCCCCCEEECCCCcCe-ecChhhhcC
Confidence 36777788888776 444567888999999999999998766655 888999999999999998 888888999
Q ss_pred CCCCEEEccCCcccc
Q 048732 153 SSLKHLSLGTNELNG 167 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~g 167 (174)
++|++|++++|++++
T Consensus 264 ~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 264 KLLQVVYLHTNNITK 278 (332)
T ss_dssp TTCCEEECCSSCCCB
T ss_pred ccCCEEECCCCCCCc
Confidence 999999999999885
No 93
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.14 E-value=1.3e-10 Score=95.41 Aligned_cols=82 Identities=22% Similarity=0.201 Sum_probs=56.0
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
.+++.|+|++|++. .+.+..|..+++|++|++++|.+++..+.. |..+++|++|++++|+++...+..|..+
T Consensus 99 ~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l 170 (452)
T 3zyi_A 99 HHLEVLQLGRNSIR----QIEVGAFNGLASLNTLELFDNWLTVIPSGA----FEYLSKLRELWLRNNPIESIPSYAFNRV 170 (452)
T ss_dssp TTCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCSBCCTTT----SSSCTTCCEEECCSCCCCEECTTTTTTC
T ss_pred CCCCEEECCCCccC----CcChhhccCcccCCEEECCCCcCCccChhh----hcccCCCCEEECCCCCcceeCHhHHhcC
Confidence 56888888888776 455667778888888888888887544444 7777778888888777774444345555
Q ss_pred CCCCEEEccC
Q 048732 153 SSLKHLSLGT 162 (174)
Q Consensus 153 ~~L~~L~Ls~ 162 (174)
++|+.|++++
T Consensus 171 ~~L~~L~l~~ 180 (452)
T 3zyi_A 171 PSLMRLDLGE 180 (452)
T ss_dssp TTCCEEECCC
T ss_pred CcccEEeCCC
Confidence 5555555544
No 94
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.14 E-value=4e-11 Score=93.94 Aligned_cols=40 Identities=25% Similarity=0.191 Sum_probs=26.4
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccc
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGC 116 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~ 116 (174)
..++.|++++|++. .+++..|..+++|++|++++|.+.+.
T Consensus 149 ~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 149 PGLKVLSIAQAHSL----NFSCEQVRVFPALSTLDLSDNPELGE 188 (312)
T ss_dssp TTCCEEEEESCSCC----CCCTTTCCCCSSCCEEECCSCTTCHH
T ss_pred CCCcEEEeeCCCCc----cchHHHhccCCCCCEEECCCCCcCcc
Confidence 45677777777665 34455667777777777777776544
No 95
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.13 E-value=1.2e-10 Score=97.90 Aligned_cols=91 Identities=21% Similarity=0.218 Sum_probs=53.9
Q ss_pred CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCcccc--ccCcchhhhcCCCCCCCEEeccCCCCCCcccc-c
Q 048732 72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITG--CVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFS-S 148 (174)
Q Consensus 72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g--~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~-~ 148 (174)
...++.|++++|++. ...+..+..+++|+.|++++|.+++ .+|.. +..+++|++|++++|++++.+|. .
T Consensus 352 l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~~~~ 423 (562)
T 3a79_B 352 PSSFTFLNFTQNVFT----DSVFQGCSTLKRLQTLILQRNGLKNFFKVALM----TKNMSSLETLDVSLNSLNSHAYDRT 423 (562)
T ss_dssp CCCCCEEECCSSCCC----TTTTTTCCSCSSCCEEECCSSCCCBTTHHHHT----TTTCTTCCEEECTTSCCBSCCSSCC
T ss_pred CCCceEEECCCCccc----cchhhhhcccCCCCEEECCCCCcCCcccchhh----hcCCCCCCEEECCCCcCCCccChhh
Confidence 356677777777665 2224456666667777777766664 22233 56666666666666666654444 3
Q ss_pred cCCCCCCCEEEccCCcccccCC
Q 048732 149 LGGLSSLKHLSLGTNELNGSID 170 (174)
Q Consensus 149 l~~l~~L~~L~Ls~N~l~g~iP 170 (174)
+..+++|++|++++|++++.+|
T Consensus 424 ~~~l~~L~~L~l~~n~l~~~~~ 445 (562)
T 3a79_B 424 CAWAESILVLNLSSNMLTGSVF 445 (562)
T ss_dssp CCCCTTCCEEECCSSCCCGGGG
T ss_pred hcCcccCCEEECCCCCCCcchh
Confidence 5555666666666666655544
No 96
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.13 E-value=1.1e-10 Score=97.01 Aligned_cols=43 Identities=26% Similarity=0.294 Sum_probs=28.9
Q ss_pred CCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCCC
Q 048732 127 SLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDI 171 (174)
Q Consensus 127 ~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP~ 171 (174)
.+++|+.|+|++|.+++ +|..+..+++|+.|+|++|+|++ +|.
T Consensus 189 ~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~ 231 (487)
T 3oja_A 189 VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEK 231 (487)
T ss_dssp CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECT
T ss_pred cCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cch
Confidence 46677777777777774 44446677777777777777775 553
No 97
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.13 E-value=1.3e-10 Score=102.34 Aligned_cols=87 Identities=20% Similarity=0.300 Sum_probs=43.7
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccc--cCC
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSS--LGG 151 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~--l~~ 151 (174)
+++.|+|++|+.. + .+++..|.++++|++|++++|.+.+..|.. |.++++|++|+|++|.+++.+|.. ++.
T Consensus 49 ~L~~LdLs~n~~~-~--~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 49 QLQLLELGSQYTP-L--TIDKEAFRNLPNLRILDLGSSKIYFLHPDA----FQGLFHLFELRLYFCGLSDAVLKDGYFRN 121 (844)
T ss_dssp SCSEEEECTTCCC-C--EECTTTTSSCTTCCEEECTTCCCCEECTTS----SCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred cCeEEeCCCCCCc-c--ccCHHHhcCCCCCCEEECCCCcCcccCHhH----ccCCcccCEeeCcCCCCCcccccCccccc
Confidence 4555555555322 1 233444555555555555555555444444 555555555555555555444432 455
Q ss_pred CCCCCEEEccCCcccc
Q 048732 152 LSSLKHLSLGTNELNG 167 (174)
Q Consensus 152 l~~L~~L~Ls~N~l~g 167 (174)
+++|++|+|++|++++
T Consensus 122 L~~L~~L~Ls~N~l~~ 137 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRS 137 (844)
T ss_dssp CSSCCEEEEESCCCCC
T ss_pred cCCCCEEECCCCcccc
Confidence 5555555555555544
No 98
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.12 E-value=1.4e-10 Score=102.68 Aligned_cols=88 Identities=20% Similarity=0.289 Sum_probs=69.9
Q ss_pred cEEEEEcCCCCCCCCccccCccccc--CCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccC------CCCCCcc
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFT--PFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTL------NHFNNSI 145 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~--~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~------N~l~g~~ 145 (174)
.++.|+|++|++. .++ ..+. .+++|+.|++++|.+++ +|.. +..+++|+.|+|++ |++.+.+
T Consensus 729 ~L~~L~Ls~N~L~----~lp-~~l~~~~l~~L~~L~Ls~N~L~~-lp~~----l~~L~~L~~L~Ls~N~~ls~N~l~~~i 798 (876)
T 4ecn_A 729 LLTTIDLRFNKLT----SLS-DDFRATTLPYLSNMDVSYNCFSS-FPTQ----PLNSSQLKAFGIRHQRDAEGNRILRQW 798 (876)
T ss_dssp GCCEEECCSSCCC----CCC-GGGSTTTCTTCCEEECCSSCCSS-CCCG----GGGCTTCCEEECCCCBCTTCCBCCCCC
T ss_pred CccEEECCCCCCc----cch-HHhhhccCCCcCEEEeCCCCCCc-cchh----hhcCCCCCEEECCCCCCcccccccccC
Confidence 6777888877766 333 3444 78888888888888886 7776 77888899998866 7788888
Q ss_pred ccccCCCCCCCEEEccCCcccccCCCC
Q 048732 146 FSSLGGLSSLKHLSLGTNELNGSIDIE 172 (174)
Q Consensus 146 p~~l~~l~~L~~L~Ls~N~l~g~iP~~ 172 (174)
|..++.+++|+.|+|++|+| +.||..
T Consensus 799 p~~l~~L~~L~~L~Ls~N~L-~~Ip~~ 824 (876)
T 4ecn_A 799 PTGITTCPSLIQLQIGSNDI-RKVDEK 824 (876)
T ss_dssp CTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred hHHHhcCCCCCEEECCCCCC-CccCHh
Confidence 88888889999999999988 688864
No 99
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.11 E-value=1.7e-10 Score=91.68 Aligned_cols=83 Identities=24% Similarity=0.343 Sum_probs=58.4
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCcccc--ccC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFS--SLG 150 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~--~l~ 150 (174)
.+++.|++++|++. .+.+..|..+++|++|++++|.+++ +|... +..+++|++|++++|+++ .+|. .+.
T Consensus 76 ~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~---~~~l~~L~~L~L~~n~l~-~l~~~~~~~ 146 (353)
T 2z80_A 76 VNLQALVLTSNGIN----TIEEDSFSSLGSLEHLDLSYNYLSN-LSSSW---FKPLSSLTFLNLLGNPYK-TLGETSLFS 146 (353)
T ss_dssp TTCCEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCSS-CCHHH---HTTCTTCSEEECTTCCCS-SSCSSCSCT
T ss_pred CCCCEEECCCCccC----ccCHhhcCCCCCCCEEECCCCcCCc-CCHhH---hCCCccCCEEECCCCCCc-ccCchhhhc
Confidence 56788888888776 4556667778888888888888774 44322 667777777777777777 3443 567
Q ss_pred CCCCCCEEEccCCc
Q 048732 151 GLSSLKHLSLGTNE 164 (174)
Q Consensus 151 ~l~~L~~L~Ls~N~ 164 (174)
.+++|++|++++|+
T Consensus 147 ~l~~L~~L~l~~n~ 160 (353)
T 2z80_A 147 HLTKLQILRVGNMD 160 (353)
T ss_dssp TCTTCCEEEEEESS
T ss_pred cCCCCcEEECCCCc
Confidence 77777777777774
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.10 E-value=1.2e-10 Score=91.05 Aligned_cols=90 Identities=19% Similarity=0.029 Sum_probs=68.5
Q ss_pred cEEEEEcCCCCCCCCccccCcccc--cCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCC
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLF--TPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGG 151 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~--~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~ 151 (174)
++++|++++|++. ...+..+ ..+++|++|++++|.+++..+......+..+++|++|++++|++++..|..|+.
T Consensus 92 ~L~~L~l~~n~l~----~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 167 (310)
T 4glp_A 92 RLKELTLEDLKIT----GTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA 167 (310)
T ss_dssp CCCEEEEESCCCB----SCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred ceeEEEeeCCEec----cchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence 4888999988776 2234445 788889999999998887655321122567888899999999888777788888
Q ss_pred CCCCCEEEccCCcccc
Q 048732 152 LSSLKHLSLGTNELNG 167 (174)
Q Consensus 152 l~~L~~L~Ls~N~l~g 167 (174)
+++|++|+|++|++.+
T Consensus 168 l~~L~~L~Ls~N~l~~ 183 (310)
T 4glp_A 168 FPALTSLDLSDNPGLG 183 (310)
T ss_dssp CTTCCEEECCSCTTCH
T ss_pred CCCCCEEECCCCCCcc
Confidence 8889999999888765
No 101
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.09 E-value=1.2e-10 Score=87.66 Aligned_cols=84 Identities=15% Similarity=0.219 Sum_probs=51.6
Q ss_pred CcEEEEEcCCCC-CCCCccccCcccccCCCCCCEEeCcC-CccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccC
Q 048732 73 GRVIKLDLAFRK-RDSAEWYMNASLFTPFQQLEFLDLSG-NNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLG 150 (174)
Q Consensus 73 ~~v~~L~L~~n~-~~~g~~~~~~~~~~~l~~L~~L~ls~-N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~ 150 (174)
.+++.|++++|+ +. .+++..|..+++|++|++++ |.+++..+.. |..+++|++|++++|++++ +|. ++
T Consensus 55 ~~L~~L~l~~n~~l~----~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~----f~~l~~L~~L~l~~n~l~~-lp~-~~ 124 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQ----QLESHSFYNLSKVTHIEIRNTRNLTYIDPDA----LKELPLLKFLGIFNTGLKM-FPD-LT 124 (239)
T ss_dssp TTCCEEEEECCSSCC----EECTTTEESCTTCCEEEEEEETTCCEECTTS----EECCTTCCEEEEEEECCCS-CCC-CT
T ss_pred CCCcEEeCCCCCCcc----eeCHhHcCCCcCCcEEECCCCCCeeEcCHHH----hCCCCCCCEEeCCCCCCcc-ccc-cc
Confidence 467777777775 54 44555667777777777776 7776433333 6666666666666666653 444 55
Q ss_pred CCCCCC---EEEccCC-ccc
Q 048732 151 GLSSLK---HLSLGTN-ELN 166 (174)
Q Consensus 151 ~l~~L~---~L~Ls~N-~l~ 166 (174)
.+++|+ +|++++| +++
T Consensus 125 ~l~~L~~L~~L~l~~N~~l~ 144 (239)
T 2xwt_C 125 KVYSTDIFFILEITDNPYMT 144 (239)
T ss_dssp TCCBCCSEEEEEEESCTTCC
T ss_pred cccccccccEEECCCCcchh
Confidence 555555 5555555 544
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.08 E-value=7.2e-11 Score=92.34 Aligned_cols=94 Identities=21% Similarity=0.157 Sum_probs=61.3
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccc--cC-cch------------------------hhhc
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGC--VQ-NEG------------------------LDRL 125 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~--~p-~~~------------------------~~~~ 125 (174)
.+++.|++++|++. .+++..|..+++|++|++++|.+.+. ++ ... ...+
T Consensus 145 ~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 220 (310)
T 4glp_A 145 PGLKVLSIAQAHSP----AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA 220 (310)
T ss_dssp SCCCEEEEECCSSC----CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred cCCCEEEeeCCCcc----hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence 46788888888775 34466677788888888888876532 11 000 0013
Q ss_pred CCCCCCCEEeccCCCCCCccccccCCC---CCCCEEEccCCcccccCCC
Q 048732 126 SSLKNLKFLDLTLNHFNNSIFSSLGGL---SSLKHLSLGTNELNGSIDI 171 (174)
Q Consensus 126 ~~l~~L~~L~ls~N~l~g~~p~~l~~l---~~L~~L~Ls~N~l~g~iP~ 171 (174)
+.+++|++||+++|++++.+|..+..+ ++|++|+|++|+|+ .+|.
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~ 268 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPK 268 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCS
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhh
Confidence 455777777777777776667666665 57777777777777 5664
No 103
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.06 E-value=3.7e-10 Score=93.86 Aligned_cols=96 Identities=24% Similarity=0.211 Sum_probs=57.8
Q ss_pred cccceEecCCCCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcC-CCCCCCEEeccCCC
Q 048732 62 QWEGVECNNTTGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLS-SLKNLKFLDLTLNH 140 (174)
Q Consensus 62 ~w~gv~c~~~~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~-~l~~L~~L~ls~N~ 140 (174)
.+.++.|.. ...++.|+|++|++. .+.+..+..+++|+.|++++|.+++..|.. +. .+++|++|+|++|.
T Consensus 110 ~l~~~~~~~-l~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 110 NISRVSCSR-GQGKKNIYLANNKIT----MLRDLDEGCRSRVQYLDLKLNEIDTVNFAE----LAASSDTLEHLNLQYNF 180 (487)
T ss_dssp CCCCEEECC-CSSCEEEECCSSCCC----SGGGBCGGGGSSEEEEECTTSCCCEEEGGG----GGGGTTTCCEEECTTSC
T ss_pred cCCCCCccc-cCCCCEEECCCCCCC----CCCchhhcCCCCCCEEECCCCCCCCcChHH----HhhhCCcccEEecCCCc
Confidence 344444443 345777777777665 233445666677777777777776655554 43 56667777777777
Q ss_pred CCCccccccCCCCCCCEEEccCCccccc
Q 048732 141 FNNSIFSSLGGLSSLKHLSLGTNELNGS 168 (174)
Q Consensus 141 l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ 168 (174)
+++. |. +..+++|+.|+|++|+|++.
T Consensus 181 l~~~-~~-~~~l~~L~~L~Ls~N~l~~~ 206 (487)
T 3oja_A 181 IYDV-KG-QVVFAKLKTLDLSSNKLAFM 206 (487)
T ss_dssp CCEE-EC-CCCCTTCCEEECCSSCCCEE
T ss_pred cccc-cc-cccCCCCCEEECCCCCCCCC
Confidence 6644 22 23466677777777776653
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.04 E-value=1.8e-10 Score=97.68 Aligned_cols=89 Identities=24% Similarity=0.282 Sum_probs=49.2
Q ss_pred CCCc-----cccce-EecCCCCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCC
Q 048732 58 SDCC-----QWEGV-ECNNTTGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNL 131 (174)
Q Consensus 58 ~~~C-----~w~gv-~c~~~~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L 131 (174)
..+| .|.++ .|.. .+++.|++++|++. .++... +++|+.|++++|.++ .+| . .+++|
T Consensus 40 ~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~----~lp~~l---~~~L~~L~Ls~N~l~-~ip-~------~l~~L 102 (571)
T 3cvr_A 40 ALPGENRNEAVSLLKECLI--NQFSELQLNRLNLS----SLPDNL---PPQITVLEITQNALI-SLP-E------LPASL 102 (571)
T ss_dssp CCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCS----CCCSCC---CTTCSEEECCSSCCS-CCC-C------CCTTC
T ss_pred CCccccccchhhhcccccc--CCccEEEeCCCCCC----ccCHhH---cCCCCEEECcCCCCc-ccc-c------ccCCC
Confidence 4567 68888 6754 46778888887765 233322 255666666666665 455 2 24555
Q ss_pred CEEeccCCCCCCccccccCCCCCCCEEEccCCcccc
Q 048732 132 KFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNG 167 (174)
Q Consensus 132 ~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g 167 (174)
++|++++|+|++ +|. +.. +|++|+|++|+|++
T Consensus 103 ~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~ 134 (571)
T 3cvr_A 103 EYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM 134 (571)
T ss_dssp CEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC
T ss_pred CEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC
Confidence 555555555553 444 332 44444444444443
No 105
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.01 E-value=9.4e-10 Score=86.27 Aligned_cols=61 Identities=26% Similarity=0.288 Sum_probs=31.7
Q ss_pred CCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCccc
Q 048732 99 PFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELN 166 (174)
Q Consensus 99 ~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~ 166 (174)
.+++|++|++++|.+++. |. ...+++|++|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus 167 ~l~~L~~L~L~~N~l~~~-~~-----~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 167 SSDTLEHLNLQYNFIYDV-KG-----QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227 (317)
T ss_dssp GTTTCCEEECTTSCCCEE-EC-----CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC
T ss_pred ccCcCCEEECCCCcCccc-cc-----ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc
Confidence 344555555555554432 21 223555666666666665 33344555566666666666655
No 106
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.99 E-value=5.4e-10 Score=87.66 Aligned_cols=85 Identities=24% Similarity=0.298 Sum_probs=67.9
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
..++.|++++|++. .++ ....+++|++|++++|.+++ +|+. +..+++|+.|++++|+++ .+|..+..+
T Consensus 169 ~~L~~L~L~~N~l~----~~~--~~~~l~~L~~L~Ls~N~l~~-l~~~----~~~l~~L~~L~L~~N~l~-~l~~~~~~l 236 (317)
T 3o53_A 169 DTLEHLNLQYNFIY----DVK--GQVVFAKLKTLDLSSNKLAF-MGPE----FQSAAGVTWISLRNNKLV-LIEKALRFS 236 (317)
T ss_dssp TTCCEEECTTSCCC----EEE--CCCCCTTCCEEECCSSCCCE-ECGG----GGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred CcCCEEECCCCcCc----ccc--cccccccCCEEECCCCcCCc-chhh----hcccCcccEEECcCCccc-chhhHhhcC
Confidence 34566666666554 221 23458999999999999984 6665 889999999999999999 689899999
Q ss_pred CCCCEEEccCCccc-ccC
Q 048732 153 SSLKHLSLGTNELN-GSI 169 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~-g~i 169 (174)
++|+.|++++|+++ +.+
T Consensus 237 ~~L~~L~l~~N~~~~~~~ 254 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGTL 254 (317)
T ss_dssp TTCCEEECTTCCCBHHHH
T ss_pred CCCCEEEccCCCccCcCH
Confidence 99999999999998 433
No 107
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.99 E-value=7.2e-10 Score=87.47 Aligned_cols=86 Identities=22% Similarity=0.347 Sum_probs=60.0
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
..++.|++++|++. .+ +.+..+++|+.|++++|.+++. + . +..+++|+.|++++|.+++..|..++.+
T Consensus 243 ~~L~~L~l~~n~l~----~~--~~~~~l~~L~~L~l~~n~l~~~-~-~----~~~l~~L~~L~L~~n~l~~~~~~~l~~l 310 (347)
T 4fmz_A 243 SQLTWLEIGTNQIS----DI--NAVKDLTKLKMLNVGSNQISDI-S-V----LNNLSQLNSLFLNNNQLGNEDMEVIGGL 310 (347)
T ss_dssp TTCCEEECCSSCCC----CC--GGGTTCTTCCEEECCSSCCCCC-G-G----GGGCTTCSEEECCSSCCCGGGHHHHHTC
T ss_pred CCCCEEECCCCccC----CC--hhHhcCCCcCEEEccCCccCCC-h-h----hcCCCCCCEEECcCCcCCCcChhHhhcc
Confidence 34555666655544 11 2356677777777777777643 2 2 6678888888888888887777778888
Q ss_pred CCCCEEEccCCcccccCC
Q 048732 153 SSLKHLSLGTNELNGSID 170 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~g~iP 170 (174)
++|++|++++|++++..|
T Consensus 311 ~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 311 TNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp TTCSEEECCSSSCCCCGG
T ss_pred ccCCEEEccCCccccccC
Confidence 888888888888886544
No 108
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.96 E-value=6.3e-10 Score=87.81 Aligned_cols=83 Identities=20% Similarity=0.248 Sum_probs=70.5
Q ss_pred CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCC
Q 048732 72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGG 151 (174)
Q Consensus 72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~ 151 (174)
...++.|++++|++. .+ +.+..+++|+.|++++|.+.+..|.. +..+++|++|++++|.+++..| +..
T Consensus 264 l~~L~~L~l~~n~l~----~~--~~~~~l~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~L~~n~l~~~~~--~~~ 331 (347)
T 4fmz_A 264 LTKLKMLNVGSNQIS----DI--SVLNNLSQLNSLFLNNNQLGNEDMEV----IGGLTNLTTLFLSQNHITDIRP--LAS 331 (347)
T ss_dssp CTTCCEEECCSSCCC----CC--GGGGGCTTCSEEECCSSCCCGGGHHH----HHTCTTCSEEECCSSSCCCCGG--GGG
T ss_pred CCCcCEEEccCCccC----CC--hhhcCCCCCCEEECcCCcCCCcChhH----hhccccCCEEEccCCccccccC--hhh
Confidence 468999999999876 22 34788999999999999998777766 8899999999999999997766 888
Q ss_pred CCCCCEEEccCCccc
Q 048732 152 LSSLKHLSLGTNELN 166 (174)
Q Consensus 152 l~~L~~L~Ls~N~l~ 166 (174)
+++|+.|++++|.|+
T Consensus 332 l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 332 LSKMDSADFANQVIK 346 (347)
T ss_dssp CTTCSEESSSCC---
T ss_pred hhccceeehhhhccc
Confidence 999999999999986
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.96 E-value=2e-09 Score=83.69 Aligned_cols=63 Identities=35% Similarity=0.462 Sum_probs=32.0
Q ss_pred ccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccc
Q 048732 97 FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNG 167 (174)
Q Consensus 97 ~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g 167 (174)
+..+++|+.|++++|.+++. .. +..+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 130 l~~l~~L~~L~l~~n~l~~~--~~----l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 130 LVHLPQLESLYLGNNKITDI--TV----LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCC--GG----GGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred hcCCCCCCEEEccCCcCCcc--hh----hccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 33444444444444444432 11 4455555555555555554333 5555566666666665553
No 110
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.96 E-value=2.2e-09 Score=83.95 Aligned_cols=80 Identities=29% Similarity=0.472 Sum_probs=35.7
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
.+++.|++++|++. .+++ +..+++|++|++++|.+++ ++ . +..+++|++|++++|++++ +|. +..+
T Consensus 63 ~~L~~L~L~~n~i~----~~~~--~~~l~~L~~L~L~~n~l~~-~~-~----~~~l~~L~~L~l~~n~l~~-~~~-l~~l 128 (308)
T 1h6u_A 63 NNLIGLELKDNQIT----DLAP--LKNLTKITELELSGNPLKN-VS-A----IAGLQSIKTLDLTSTQITD-VTP-LAGL 128 (308)
T ss_dssp TTCCEEECCSSCCC----CCGG--GTTCCSCCEEECCSCCCSC-CG-G----GTTCTTCCEEECTTSCCCC-CGG-GTTC
T ss_pred CCCCEEEccCCcCC----CChh--HccCCCCCEEEccCCcCCC-ch-h----hcCCCCCCEEECCCCCCCC-chh-hcCC
Confidence 34555555555544 1212 4455555555555555443 22 1 4444444444444444442 221 4444
Q ss_pred CCCCEEEccCCccc
Q 048732 153 SSLKHLSLGTNELN 166 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~ 166 (174)
++|++|++++|+++
T Consensus 129 ~~L~~L~l~~n~l~ 142 (308)
T 1h6u_A 129 SNLQVLYLDLNQIT 142 (308)
T ss_dssp TTCCEEECCSSCCC
T ss_pred CCCCEEECCCCccC
Confidence 44444444444443
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.94 E-value=3.3e-09 Score=81.26 Aligned_cols=86 Identities=28% Similarity=0.391 Sum_probs=48.4
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcch----------------hhhcCCCCCCCEEec
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEG----------------LDRLSSLKNLKFLDL 136 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~----------------~~~~~~l~~L~~L~l 136 (174)
.+++.|++++|++. .+++ +..+++|+.|++++|.+++ +|... ...+..+++|+.|++
T Consensus 63 ~~L~~L~L~~N~i~----~~~~--l~~l~~L~~L~L~~N~l~~-l~~~~~~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L 135 (263)
T 1xeu_A 63 TNLKELHLSHNQIS----DLSP--LKDLTKLEELSVNRNRLKN-LNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSI 135 (263)
T ss_dssp TTCCEEECCSSCCC----CCGG--GTTCSSCCEEECCSSCCSC-CTTCCCSSCCEEECCSSCCSBSGGGTTCTTCCEEEC
T ss_pred CCCCEEECCCCccC----CChh--hccCCCCCEEECCCCccCC-cCccccCcccEEEccCCccCCChhhcCcccccEEEC
Confidence 45666777766655 2222 5566666666666666553 22210 001556666666666
Q ss_pred cCCCCCCccccccCCCCCCCEEEccCCcccc
Q 048732 137 TLNHFNNSIFSSLGGLSSLKHLSLGTNELNG 167 (174)
Q Consensus 137 s~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g 167 (174)
++|++++ +| .++.+++|+.|++++|++++
T Consensus 136 s~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 136 RNNKLKS-IV-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp TTSCCCB-CG-GGGGCTTCCEEECTTSCCCB
T ss_pred CCCcCCC-Ch-HHccCCCCCEEECCCCcCcc
Confidence 6666664 33 45666666666666666664
No 112
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.94 E-value=2.2e-09 Score=84.03 Aligned_cols=36 Identities=25% Similarity=0.264 Sum_probs=18.1
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccc
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNIT 114 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~ 114 (174)
..++.|++++|++. .++ .+..+++|++|++++|.++
T Consensus 107 ~~L~~L~l~~n~l~----~~~--~l~~l~~L~~L~l~~n~l~ 142 (308)
T 1h6u_A 107 QSIKTLDLTSTQIT----DVT--PLAGLSNLQVLYLDLNQIT 142 (308)
T ss_dssp TTCCEEECTTSCCC----CCG--GGTTCTTCCEEECCSSCCC
T ss_pred CCCCEEECCCCCCC----Cch--hhcCCCCCCEEECCCCccC
Confidence 45666666666554 111 1444555555555555544
No 113
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.93 E-value=3e-09 Score=82.63 Aligned_cols=64 Identities=28% Similarity=0.398 Sum_probs=38.7
Q ss_pred ccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCccccc
Q 048732 97 FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGS 168 (174)
Q Consensus 97 ~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ 168 (174)
+..+++|++|++++|.+++ ++ . +..+++|+.|++++|++++. ..++.+++|++|++++|++++.
T Consensus 108 l~~l~~L~~L~L~~n~i~~-~~-~----l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNGISD-IN-G----LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp GTTCTTCCEEECTTSCCCC-CG-G----GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred hccCCCCCEEECCCCcCCC-Ch-h----hcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc
Confidence 4555555555555555553 22 2 55666666666666666643 4566667777777777776653
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.90 E-value=3.6e-09 Score=90.27 Aligned_cols=63 Identities=35% Similarity=0.462 Sum_probs=34.3
Q ss_pred ccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccc
Q 048732 97 FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNG 167 (174)
Q Consensus 97 ~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g 167 (174)
+..+++|+.|+|++|.+++. .. +..+++|+.|+|++|.+++..| +..+++|+.|+|++|+|++
T Consensus 127 l~~l~~L~~L~Ls~N~l~~l--~~----l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 127 LVHLPQLESLYLGNNKITDI--TV----LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp GGGCTTCSEEECCSSCCCCC--GG----GGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred ccCCCccCEEECCCCccCCc--hh----hcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 44455555555555555432 12 5556666666666666654444 5555666666666665553
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.85 E-value=5.8e-09 Score=89.03 Aligned_cols=83 Identities=27% Similarity=0.298 Sum_probs=54.4
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~ 153 (174)
+++.|+|++|++. .+ +.+..+++|+.|++++|.+.+ ++ . +..+++|+.|+|++|++++. ..+..++
T Consensus 88 ~L~~L~Ls~N~l~----~l--~~l~~l~~L~~L~Ls~N~l~~-l~-~----l~~l~~L~~L~Ls~N~l~~l--~~l~~l~ 153 (605)
T 1m9s_A 88 NLGWLFLDENKIK----DL--SSLKDLKKLKSLSLEHNGISD-IN-G----LVHLPQLESLYLGNNKITDI--TVLSRLT 153 (605)
T ss_dssp TCCEEECCSSCCC----CC--TTSTTCTTCCEEECTTSCCCC-CG-G----GGGCTTCSEEECCSSCCCCC--GGGGSCT
T ss_pred CCCEEECcCCCCC----CC--hhhccCCCCCEEEecCCCCCC-Cc-c----ccCCCccCEEECCCCccCCc--hhhcccC
Confidence 4555555555443 11 235666777777777777664 32 2 66777788888888877754 5577788
Q ss_pred CCCEEEccCCcccccCC
Q 048732 154 SLKHLSLGTNELNGSID 170 (174)
Q Consensus 154 ~L~~L~Ls~N~l~g~iP 170 (174)
+|+.|+|++|+|++..|
T Consensus 154 ~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 154 KLDTLSLEDNQISDIVP 170 (605)
T ss_dssp TCSEEECCSSCCCCCGG
T ss_pred CCCEEECcCCcCCCchh
Confidence 88888888888876544
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.85 E-value=8.1e-09 Score=79.10 Aligned_cols=82 Identities=27% Similarity=0.287 Sum_probs=58.9
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCcccc-----
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFS----- 147 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~----- 147 (174)
.+++.|++++|++. .++ .+..+++|+.|++++|.+++..+ +..+++|++|++++|++++ +|.
T Consensus 41 ~~L~~L~l~~n~i~----~l~--~l~~l~~L~~L~L~~N~i~~~~~------l~~l~~L~~L~L~~N~l~~-l~~~~~~~ 107 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQ----SLA--GMQFFTNLKELHLSHNQISDLSP------LKDLTKLEELSVNRNRLKN-LNGIPSAC 107 (263)
T ss_dssp TTCSEEECTTSCCC----CCT--TGGGCTTCCEEECCSSCCCCCGG------GTTCSSCCEEECCSSCCSC-CTTCCCSS
T ss_pred CcCcEEECcCCCcc----cch--HHhhCCCCCEEECCCCccCCChh------hccCCCCCEEECCCCccCC-cCccccCc
Confidence 57899999999876 333 57889999999999999985433 6677888888888777764 332
Q ss_pred ---------------ccCCCCCCCEEEccCCcccc
Q 048732 148 ---------------SLGGLSSLKHLSLGTNELNG 167 (174)
Q Consensus 148 ---------------~l~~l~~L~~L~Ls~N~l~g 167 (174)
.+..+++|+.|++++|++++
T Consensus 108 L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~ 142 (263)
T 1xeu_A 108 LSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKS 142 (263)
T ss_dssp CCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCB
T ss_pred ccEEEccCCccCCChhhcCcccccEEECCCCcCCC
Confidence 24455556666666665553
No 117
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.85 E-value=5.1e-09 Score=86.13 Aligned_cols=41 Identities=22% Similarity=0.391 Sum_probs=23.0
Q ss_pred cCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccc
Q 048732 125 LSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNG 167 (174)
Q Consensus 125 ~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g 167 (174)
+..+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 349 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 349 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp GTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred hccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 4455555555555555555444 5555555555555555554
No 118
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.84 E-value=1e-08 Score=84.56 Aligned_cols=80 Identities=20% Similarity=0.262 Sum_probs=58.8
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
.+++.|++++|++. .+ .+..+++|++|++++|.+++. | ++.+++|++|++++|++++ +| ++.+
T Consensus 64 ~~L~~L~Ls~n~l~----~~---~~~~l~~L~~L~Ls~N~l~~~-~------~~~l~~L~~L~L~~N~l~~-l~--~~~l 126 (457)
T 3bz5_A 64 TGLTKLICTSNNIT----TL---DLSQNTNLTYLACDSNKLTNL-D------VTPLTKLTYLNCDTNKLTK-LD--VSQN 126 (457)
T ss_dssp TTCSEEECCSSCCS----CC---CCTTCTTCSEEECCSSCCSCC-C------CTTCTTCCEEECCSSCCSC-CC--CTTC
T ss_pred CCCCEEEccCCcCC----eE---ccccCCCCCEEECcCCCCcee-e------cCCCCcCCEEECCCCcCCe-ec--CCCC
Confidence 46777777777665 22 167778888888888887753 3 6678888888888888875 44 7788
Q ss_pred CCCCEEEccCCcccccCC
Q 048732 153 SSLKHLSLGTNELNGSID 170 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~g~iP 170 (174)
++|++|++++|++++ +|
T Consensus 127 ~~L~~L~l~~N~l~~-l~ 143 (457)
T 3bz5_A 127 PLLTYLNCARNTLTE-ID 143 (457)
T ss_dssp TTCCEEECTTSCCSC-CC
T ss_pred CcCCEEECCCCccce-ec
Confidence 888888888888876 44
No 119
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.81 E-value=1.8e-08 Score=83.01 Aligned_cols=82 Identities=15% Similarity=0.195 Sum_probs=53.9
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l 152 (174)
..++.|++++|++. .+ + .+..+++|++|++++|.+++ +|.. +++|++|++++|++++ +| .++.+
T Consensus 131 ~~L~~L~L~~n~l~----~l-p-~~~~l~~L~~L~l~~N~l~~-lp~~-------~~~L~~L~L~~n~l~~-l~-~~~~l 194 (454)
T 1jl5_A 131 PLLEYLGVSNNQLE----KL-P-ELQNSSFLKIIDVDNNSLKK-LPDL-------PPSLEFIAAGNNQLEE-LP-ELQNL 194 (454)
T ss_dssp TTCCEEECCSSCCS----SC-C-CCTTCTTCCEEECCSSCCSC-CCCC-------CTTCCEEECCSSCCSS-CC-CCTTC
T ss_pred CCCCEEECcCCCCC----CC-c-ccCCCCCCCEEECCCCcCcc-cCCC-------cccccEEECcCCcCCc-Cc-cccCC
Confidence 35666666666554 22 2 36777777788887777774 5543 2467777777777774 55 47777
Q ss_pred CCCCEEEccCCcccccCCC
Q 048732 153 SSLKHLSLGTNELNGSIDI 171 (174)
Q Consensus 153 ~~L~~L~Ls~N~l~g~iP~ 171 (174)
++|++|++++|++++ +|.
T Consensus 195 ~~L~~L~l~~N~l~~-l~~ 212 (454)
T 1jl5_A 195 PFLTAIYADNNSLKK-LPD 212 (454)
T ss_dssp TTCCEEECCSSCCSS-CCC
T ss_pred CCCCEEECCCCcCCc-CCC
Confidence 777777777777775 443
No 120
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.80 E-value=2e-08 Score=82.81 Aligned_cols=77 Identities=27% Similarity=0.342 Sum_probs=49.7
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~ 153 (174)
.++.|++++|++. .++ +..+++|+.|++++|.+++. + ++.+++|+.|++++|++++ +| ++.++
T Consensus 171 ~L~~L~ls~n~l~----~l~---l~~l~~L~~L~l~~N~l~~~-~------l~~l~~L~~L~Ls~N~l~~-ip--~~~l~ 233 (457)
T 3bz5_A 171 QLTTLDCSFNKIT----ELD---VSQNKLLNRLNCDTNNITKL-D------LNQNIQLTFLDCSSNKLTE-ID--VTPLT 233 (457)
T ss_dssp TCCEEECCSSCCC----CCC---CTTCTTCCEEECCSSCCSCC-C------CTTCTTCSEEECCSSCCSC-CC--CTTCT
T ss_pred cCCEEECCCCccc----eec---cccCCCCCEEECcCCcCCee-c------cccCCCCCEEECcCCcccc-cC--ccccC
Confidence 4555555555544 111 45566666666666666643 2 6677777777777777775 55 67777
Q ss_pred CCCEEEccCCcccc
Q 048732 154 SLKHLSLGTNELNG 167 (174)
Q Consensus 154 ~L~~L~Ls~N~l~g 167 (174)
+|+.|++++|++++
T Consensus 234 ~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 234 QLTYFDCSVNPLTE 247 (457)
T ss_dssp TCSEEECCSSCCSC
T ss_pred CCCEEEeeCCcCCC
Confidence 77777777777776
No 121
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.80 E-value=1.1e-08 Score=84.15 Aligned_cols=63 Identities=25% Similarity=0.354 Sum_probs=26.4
Q ss_pred ccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccc
Q 048732 97 FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNG 167 (174)
Q Consensus 97 ~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g 167 (174)
+..+++|+.|++++|.+++..+ +..+++|+.|++++|++++..| ++.+++|+.|++++|++++
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISP------LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 323 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSC
T ss_pred hhcCCCCCEEECCCCccCcccc------ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCC
Confidence 3344444444444444442211 3344444444444444443222 3344444444444444443
No 122
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.79 E-value=8.4e-09 Score=88.29 Aligned_cols=63 Identities=27% Similarity=0.185 Sum_probs=49.7
Q ss_pred CCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCC
Q 048732 99 PFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSID 170 (174)
Q Consensus 99 ~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP 170 (174)
.+++|+.|++++|.++ .+|. .+++|+.|++++|+++ .+|..+..+++|+.|+|++|+++|.+|
T Consensus 239 ~l~~L~~L~Ls~N~L~-~lp~-------~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 239 LPSELKELMVSGNRLT-SLPM-------LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp CCTTCCEEECCSSCCS-CCCC-------CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred CCCcCcEEECCCCCCC-cCCc-------ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence 3466667777777666 3443 4678999999999998 788889999999999999999988665
No 123
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.78 E-value=4.9e-10 Score=87.98 Aligned_cols=86 Identities=22% Similarity=0.178 Sum_probs=69.7
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccc-cCcchhhhcCCCCCCCEEeccCCCCCCccccccCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGC-VQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGG 151 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~-~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~ 151 (174)
..++.+++++|.+. + ..+. +..+++|++|++++|.+++. +|.. +..+++|++|++++|.+++..|..++.
T Consensus 70 ~~l~~L~l~~n~l~-~---~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~----~~~~~~L~~L~L~~~~l~~~~~~~l~~ 140 (336)
T 2ast_B 70 QGVIAFRCPRSFMD-Q---PLAE-HFSPFRVQHMDLSNSVIEVSTLHGI----LSQCSKLQNLSLEGLRLSDPIVNTLAK 140 (336)
T ss_dssp TTCSEEECTTCEEC-S---CCCS-CCCCBCCCEEECTTCEECHHHHHHH----HTTBCCCSEEECTTCBCCHHHHHHHTT
T ss_pred ccceEEEcCCcccc-c---cchh-hccCCCCCEEEccCCCcCHHHHHHH----HhhCCCCCEEeCcCcccCHHHHHHHhc
Confidence 45666777766554 1 2233 56789999999999998865 6666 889999999999999999889999999
Q ss_pred CCCCCEEEccCC-cccc
Q 048732 152 LSSLKHLSLGTN-ELNG 167 (174)
Q Consensus 152 l~~L~~L~Ls~N-~l~g 167 (174)
+++|++|++++| .+++
T Consensus 141 ~~~L~~L~L~~~~~l~~ 157 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSE 157 (336)
T ss_dssp CTTCSEEECTTCBSCCH
T ss_pred CCCCCEEECCCCCCCCH
Confidence 999999999999 6775
No 124
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.78 E-value=6.2e-09 Score=88.26 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=30.0
Q ss_pred CEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCC
Q 048732 132 KFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSID 170 (174)
Q Consensus 132 ~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP 170 (174)
+.|+|++|+|+ .+|..+..+++|+.|+|++|+|+|.+|
T Consensus 210 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp EEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred eEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 77888888887 577777778888888888888887665
No 125
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.78 E-value=7.5e-09 Score=85.30 Aligned_cols=65 Identities=32% Similarity=0.299 Sum_probs=30.9
Q ss_pred CCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCC--ccccccCCC-------------CCCCEEEccCCc
Q 048732 100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNN--SIFSSLGGL-------------SSLKHLSLGTNE 164 (174)
Q Consensus 100 l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g--~~p~~l~~l-------------~~L~~L~Ls~N~ 164 (174)
+++|+.|++++|.++ .+|. .+++|++|++++|++++ .+|..++.+ ++|+.|++++|+
T Consensus 336 ~~~L~~L~L~~N~l~-~lp~-------~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 336 PPRLERLIASFNHLA-EVPE-------LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp CTTCCEEECCSSCCS-CCCC-------CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred CCcCCEEECCCCccc-cccc-------hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 456666666666665 3443 35778888888888887 677777766 778888888888
Q ss_pred ccc--cCCCC
Q 048732 165 LNG--SIDIE 172 (174)
Q Consensus 165 l~g--~iP~~ 172 (174)
++| .||.+
T Consensus 408 l~~~~~iP~s 417 (454)
T 1jl5_A 408 LREFPDIPES 417 (454)
T ss_dssp ----------
T ss_pred CCccccchhh
Confidence 886 67653
No 126
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.73 E-value=4.9e-09 Score=82.20 Aligned_cols=88 Identities=23% Similarity=0.261 Sum_probs=72.6
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCC-CCCCc-cccccC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLN-HFNNS-IFSSLG 150 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N-~l~g~-~p~~l~ 150 (174)
.+++.|++++|++.... .+..+..+++|++|++++|.+++..+.. ++.+++|++|++++| .+++. +|..+.
T Consensus 93 ~~L~~L~L~~~~l~~~~---~~~~~~~~~~L~~L~L~~~~l~~~~~~~----l~~~~~L~~L~L~~~~~l~~~~l~~~~~ 165 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVST---LHGILSQCSKLQNLSLEGLRLSDPIVNT----LAKNSNLVRLNLSGCSGFSEFALQTLLS 165 (336)
T ss_dssp BCCCEEECTTCEECHHH---HHHHHTTBCCCSEEECTTCBCCHHHHHH----HTTCTTCSEEECTTCBSCCHHHHHHHHH
T ss_pred CCCCEEEccCCCcCHHH---HHHHHhhCCCCCEEeCcCcccCHHHHHH----HhcCCCCCEEECCCCCCCCHHHHHHHHh
Confidence 57899999999765211 2455788999999999999988777766 888999999999999 78763 777788
Q ss_pred CCCCCCEEEccCC-cccc
Q 048732 151 GLSSLKHLSLGTN-ELNG 167 (174)
Q Consensus 151 ~l~~L~~L~Ls~N-~l~g 167 (174)
.+++|++|++++| ++++
T Consensus 166 ~~~~L~~L~l~~~~~l~~ 183 (336)
T 2ast_B 166 SCSRLDELNLSWCFDFTE 183 (336)
T ss_dssp HCTTCCEEECCCCTTCCH
T ss_pred cCCCCCEEcCCCCCCcCh
Confidence 8999999999999 8875
No 127
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.73 E-value=1.2e-08 Score=78.81 Aligned_cols=67 Identities=25% Similarity=0.306 Sum_probs=55.3
Q ss_pred CCCCCCEEeCcCCcccc--ccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC--CCCEEEccCCcccccCCC
Q 048732 99 PFQQLEFLDLSGNNITG--CVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS--SLKHLSLGTNELNGSIDI 171 (174)
Q Consensus 99 ~l~~L~~L~ls~N~l~g--~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~--~L~~L~Ls~N~l~g~iP~ 171 (174)
++++|+.|+|++|.+++ .+|.. +..+++|+.|+|++|++++. ..+..++ +|++|+|++|.+++.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~----~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSI----VQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTH----HHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred hCCCCCEEECCCCCCCCCccchhH----HhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCc
Confidence 57899999999999997 45555 67899999999999999965 2344444 899999999999987773
No 128
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.72 E-value=1.9e-09 Score=86.56 Aligned_cols=68 Identities=26% Similarity=0.263 Sum_probs=38.9
Q ss_pred cccCCCCCCEEeCcCCccc----cccCcchhhhcCCCCCCCEEeccCCCCCCc----ccccc--CCCCCCCEEEccCCcc
Q 048732 96 LFTPFQQLEFLDLSGNNIT----GCVQNEGLDRLSSLKNLKFLDLTLNHFNNS----IFSSL--GGLSSLKHLSLGTNEL 165 (174)
Q Consensus 96 ~~~~l~~L~~L~ls~N~l~----g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~----~p~~l--~~l~~L~~L~Ls~N~l 165 (174)
.+..+++|+.|++++|.++ +.+|.. +..+++|+.|+|++|.+++. +|..+ +.+++|++|+|++|++
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~----l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAIA----LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHH----GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHHH----HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence 3455566666666666654 334443 55666666666666666544 44444 2356666666666666
Q ss_pred cc
Q 048732 166 NG 167 (174)
Q Consensus 166 ~g 167 (174)
++
T Consensus 287 ~~ 288 (386)
T 2ca6_A 287 EL 288 (386)
T ss_dssp BH
T ss_pred CH
Confidence 54
No 129
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.72 E-value=2.7e-09 Score=85.68 Aligned_cols=94 Identities=19% Similarity=0.187 Sum_probs=48.9
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCC---ccccccCcch---hhhcCCCCCCCEEeccCCCCCC---
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGN---NITGCVQNEG---LDRLSSLKNLKFLDLTLNHFNN--- 143 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N---~l~g~~p~~~---~~~~~~l~~L~~L~ls~N~l~g--- 143 (174)
..++.|+|++|++...........+..+++|+.|++++| ++++.+|... ...+..+++|++|+|++|.+++
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 346666666665541110001123455666666666664 3334444320 1113566666666666666665
Q ss_pred -ccccccCCCCCCCEEEccCCccc
Q 048732 144 -SIFSSLGGLSSLKHLSLGTNELN 166 (174)
Q Consensus 144 -~~p~~l~~l~~L~~L~Ls~N~l~ 166 (174)
.+|..+..+++|++|+|++|.++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCH
T ss_pred HHHHHHHHhCCCCCEEECcCCCCC
Confidence 35555666666666666666654
No 130
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.71 E-value=1.5e-09 Score=86.69 Aligned_cols=90 Identities=24% Similarity=0.292 Sum_probs=52.3
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCC-----CCCCEEeCcCCccccccCcchhhhcCCC-CCCCEEeccCCCCCCcccc
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPF-----QQLEFLDLSGNNITGCVQNEGLDRLSSL-KNLKFLDLTLNHFNNSIFS 147 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l-----~~L~~L~ls~N~l~g~~p~~~~~~~~~l-~~L~~L~ls~N~l~g~~p~ 147 (174)
.+++|+|++|++.. ..+..+..+ ++|++|++++|.+++..+......+..+ ++|++|++++|++++..+.
T Consensus 52 ~L~~L~Ls~N~l~~----~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 127 (362)
T 3goz_A 52 SVTSLNLSGNSLGF----KNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSS 127 (362)
T ss_dssp TCCEEECCSSCGGG----SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred ceeEEECcCCCCCH----HHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHH
Confidence 56777777776541 112223332 6777777777777654443312223444 6777777777777655444
Q ss_pred c----cCC-CCCCCEEEccCCcccc
Q 048732 148 S----LGG-LSSLKHLSLGTNELNG 167 (174)
Q Consensus 148 ~----l~~-l~~L~~L~Ls~N~l~g 167 (174)
. +.. .++|++|+|++|++++
T Consensus 128 ~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 128 EFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp HHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred HHHHHHHhCCCceeEEEccCCcCCH
Confidence 3 333 2577777777777763
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.68 E-value=9.2e-11 Score=86.07 Aligned_cols=92 Identities=24% Similarity=0.278 Sum_probs=53.5
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcch------------------hhhcCCCCCCCEE
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEG------------------LDRLSSLKNLKFL 134 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~------------------~~~~~~l~~L~~L 134 (174)
..++.|++++|++. .+ + .+..+++|+.|++++|.++ .+|... ...+..+++|++|
T Consensus 48 ~~L~~L~ls~n~l~----~l-~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L 120 (198)
T 1ds9_A 48 KACKHLALSTNNIE----KI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVL 120 (198)
T ss_dssp TTCSEEECSEEEES----CC-C-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEE
T ss_pred CCCCEEECCCCCCc----cc-c-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEE
Confidence 35666666666554 12 2 3455555555555555555 344320 0014456667777
Q ss_pred eccCCCCCCccc-cccCCCCCCCEEEccCCcccccCCC
Q 048732 135 DLTLNHFNNSIF-SSLGGLSSLKHLSLGTNELNGSIDI 171 (174)
Q Consensus 135 ~ls~N~l~g~~p-~~l~~l~~L~~L~Ls~N~l~g~iP~ 171 (174)
++++|++++..+ ..+..+++|++|++++|++++.+|.
T Consensus 121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp EESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred ECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 777777763222 3677778888888888887776553
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.64 E-value=2.3e-10 Score=83.97 Aligned_cols=65 Identities=26% Similarity=0.350 Sum_probs=57.2
Q ss_pred cccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccc
Q 048732 96 LFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNG 167 (174)
Q Consensus 96 ~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g 167 (174)
.+..+++|++|++++|.+++ +| . +..+++|++|++++|.++ .+|..+..+++|++|++++|++++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~----~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~ 107 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-S----LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS 107 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-C----HHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-c----cccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc
Confidence 68889999999999999986 77 4 888999999999999998 678877777889999999998875
No 133
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.62 E-value=1.7e-08 Score=86.40 Aligned_cols=55 Identities=25% Similarity=0.210 Sum_probs=28.1
Q ss_pred CCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCccc
Q 048732 100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELN 166 (174)
Q Consensus 100 l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~ 166 (174)
+++|++|++++|.++ .+|. .+++|++|++++|.+++ +|. .+++|+.|++++|+++
T Consensus 80 l~~L~~L~Ls~N~l~-~lp~-------~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~ 134 (622)
T 3g06_A 80 PPELRTLEVSGNQLT-SLPV-------LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLT 134 (622)
T ss_dssp CTTCCEEEECSCCCS-CCCC-------CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCS
T ss_pred CCCCCEEEcCCCcCC-cCCC-------CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCC
Confidence 445555555555554 2332 34555666666665552 333 3344555555555555
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.54 E-value=1e-08 Score=83.62 Aligned_cols=94 Identities=21% Similarity=0.108 Sum_probs=60.6
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCC-CCCCCEEeccCCCCCC----ccccc
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSS-LKNLKFLDLTLNHFNN----SIFSS 148 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~-l~~L~~L~ls~N~l~g----~~p~~ 148 (174)
.++.|++++|++........+..+..+++|++|++++|.+++..+......+.. .++|++|++++|.+++ .+|..
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 393 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 393 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence 455555555544311100012334556788888888887765433321111332 6789999999999886 67888
Q ss_pred cCCCCCCCEEEccCCcccc
Q 048732 149 LGGLSSLKHLSLGTNELNG 167 (174)
Q Consensus 149 l~~l~~L~~L~Ls~N~l~g 167 (174)
+..+++|++|++++|++++
T Consensus 394 l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 394 LLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHCCCCCEEECCSSSCCH
T ss_pred HHhCCCccEEECCCCCCCH
Confidence 8888999999999998875
No 135
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.48 E-value=3.3e-08 Score=78.80 Aligned_cols=93 Identities=23% Similarity=0.300 Sum_probs=70.7
Q ss_pred CCcEEEEEcCCCCCCCCccccCc----ccccCCC-CCCEEeCcCCccccccCcchhhhcCCC-CCCCEEeccCCCCCCcc
Q 048732 72 TGRVIKLDLAFRKRDSAEWYMNA----SLFTPFQ-QLEFLDLSGNNITGCVQNEGLDRLSSL-KNLKFLDLTLNHFNNSI 145 (174)
Q Consensus 72 ~~~v~~L~L~~n~~~~g~~~~~~----~~~~~l~-~L~~L~ls~N~l~g~~p~~~~~~~~~l-~~L~~L~ls~N~l~g~~ 145 (174)
...++.|+|++|++. .... ..+..++ +|++|++++|.+++..+......+... ++|++|++++|++++..
T Consensus 21 ~~~L~~L~Ls~n~l~----~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 96 (362)
T 3goz_A 21 PHGVTSLDLSLNNLY----SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKS 96 (362)
T ss_dssp CTTCCEEECTTSCGG----GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred CCCceEEEccCCCCC----hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHH
Confidence 356999999999876 2333 5577888 899999999999876555411112333 89999999999999777
Q ss_pred cccc----CCC-CCCCEEEccCCccccc
Q 048732 146 FSSL----GGL-SSLKHLSLGTNELNGS 168 (174)
Q Consensus 146 p~~l----~~l-~~L~~L~Ls~N~l~g~ 168 (174)
+..+ ..+ ++|++|++++|++++.
T Consensus 97 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 124 (362)
T 3goz_A 97 SDELVKTLAAIPFTITVLDLGWNDFSSK 124 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred HHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence 6644 444 8999999999999864
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.44 E-value=2.2e-08 Score=81.66 Aligned_cols=88 Identities=20% Similarity=0.260 Sum_probs=55.2
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCC----CCCEEeCcCCcccc----ccCcchhhhcCCCCCCCEEeccCCCCCCc
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQ----QLEFLDLSGNNITG----CVQNEGLDRLSSLKNLKFLDLTLNHFNNS 144 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~----~L~~L~ls~N~l~g----~~p~~~~~~~~~l~~L~~L~ls~N~l~g~ 144 (174)
.++++|++++|++..... ...+..++ +|++|++++|.++. .++.. +..+++|++|++++|.+++.
T Consensus 56 ~~L~~L~Ls~n~l~~~~~---~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~----l~~~~~L~~L~Ls~n~i~~~ 128 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGV---HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST----LRTLPTLQELHLSDNLLGDA 128 (461)
T ss_dssp TTCCEEECTTCCCHHHHH---HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH----TTSCTTCCEEECCSSBCHHH
T ss_pred CCcCEEeCCCCcCChHHH---HHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHH----HccCCceeEEECCCCcCchH
Confidence 467788888776542110 11122333 68888888887763 34444 77788888888888887654
Q ss_pred ccccc-----CCCCCCCEEEccCCcccc
Q 048732 145 IFSSL-----GGLSSLKHLSLGTNELNG 167 (174)
Q Consensus 145 ~p~~l-----~~l~~L~~L~Ls~N~l~g 167 (174)
.+..+ ...++|++|++++|++++
T Consensus 129 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 156 (461)
T 1z7x_W 129 GLQLLCEGLLDPQCRLEKLQLEYCSLSA 156 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred HHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence 33322 234568888888887775
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.43 E-value=4.8e-07 Score=71.10 Aligned_cols=88 Identities=15% Similarity=0.204 Sum_probs=74.6
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCC-EEeccCCCCCCccccccCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLK-FLDLTLNHFNNSIFSSLGG 151 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~-~L~ls~N~l~g~~p~~l~~ 151 (174)
..++.|+|++|++. .++...|..+++|+.+++..| +. .++... |.++++|+ .+++.. .++.+-+..|.+
T Consensus 226 ~~L~~l~L~~n~i~----~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~a---F~~~~~L~~~l~l~~-~l~~I~~~aF~~ 295 (329)
T 3sb4_A 226 PNLVSLDISKTNAT----TIPDFTFAQKKYLLKIKLPHN-LK-TIGQRV---FSNCGRLAGTLELPA-SVTAIEFGAFMG 295 (329)
T ss_dssp TTCCEEECTTBCCC----EECTTTTTTCTTCCEEECCTT-CC-EECTTT---TTTCTTCCEEEEECT-TCCEECTTTTTT
T ss_pred CCCeEEECCCCCcc----eecHhhhhCCCCCCEEECCcc-cc-eehHHH---hhCChhccEEEEEcc-cceEEchhhhhC
Confidence 57999999998887 788889999999999999998 65 466544 99999999 999998 777455678999
Q ss_pred CCCCCEEEccCCcccccCCC
Q 048732 152 LSSLKHLSLGTNELNGSIDI 171 (174)
Q Consensus 152 l~~L~~L~Ls~N~l~g~iP~ 171 (174)
+++|+.++++.|+++ .|+.
T Consensus 296 c~~L~~l~l~~n~i~-~I~~ 314 (329)
T 3sb4_A 296 CDNLRYVLATGDKIT-TLGD 314 (329)
T ss_dssp CTTEEEEEECSSCCC-EECT
T ss_pred CccCCEEEeCCCccC-ccch
Confidence 999999999999887 3543
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.43 E-value=2e-08 Score=80.85 Aligned_cols=69 Identities=19% Similarity=0.131 Sum_probs=33.4
Q ss_pred cCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCc----cccccCCCCCCCEEEccCCccc
Q 048732 98 TPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNS----IFSSLGGLSSLKHLSLGTNELN 166 (174)
Q Consensus 98 ~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~----~p~~l~~l~~L~~L~Ls~N~l~ 166 (174)
...++|++|++++|.++..-.......+...++|+.|+|++|.++.. +...+...++|++|+|++|.|+
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 34455555555555554211000011144555666666666666532 2233344556666666666654
No 139
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.36 E-value=5.9e-07 Score=71.21 Aligned_cols=65 Identities=17% Similarity=0.234 Sum_probs=44.5
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCE-EeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCc
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEF-LDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNS 144 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~-L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~ 144 (174)
.+++.|+|++|++.+ .+++..|.+++++++ +.+..|++....|.. |..+++|++|++++|++++.
T Consensus 54 ~~L~~L~Ls~N~i~~---~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~----f~~l~~L~~L~l~~n~l~~~ 119 (350)
T 4ay9_X 54 GDLEKIEISQNDVLE---VIEADVFSNLPKLHEIRIEKANNLLYINPEA----FQNLPNLQYLLISNTGIKHL 119 (350)
T ss_dssp TTCCEEEEECCTTCC---EECTTSBCSCTTCCEEEEEEETTCCEECTTS----BCCCTTCCEEEEEEECCSSC
T ss_pred CCCCEEECcCCCCCC---ccChhHhhcchhhhhhhcccCCcccccCchh----hhhccccccccccccccccC
Confidence 578999999998751 244556777777665 455567777544555 77777788888777777643
No 140
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.35 E-value=9.5e-08 Score=69.45 Aligned_cols=94 Identities=17% Similarity=0.146 Sum_probs=44.5
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEec--cCCCCCCc----cc
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDL--TLNHFNNS----IF 146 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~l--s~N~l~g~----~p 146 (174)
..+++|+|++|++...........+...+.|++|++++|.+...--......+...++|++|+| +.|.++.. +.
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~ 144 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA 144 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence 3455666666655421100011223334556666666666543210000112455566666666 55666533 22
Q ss_pred cccCCCCCCCEEEccCCccc
Q 048732 147 SSLGGLSSLKHLSLGTNELN 166 (174)
Q Consensus 147 ~~l~~l~~L~~L~Ls~N~l~ 166 (174)
..+...++|++|+|++|.+.
T Consensus 145 ~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 145 NMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCcCEEeccCCCCC
Confidence 33444456666666666653
No 141
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.35 E-value=1.8e-07 Score=72.17 Aligned_cols=81 Identities=23% Similarity=0.275 Sum_probs=60.9
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCcccc-----
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFS----- 147 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~----- 147 (174)
..++.|+|++|++.+ . .-.+..+..+++|+.|+|++|.+++. . . ...+..+ +|+.|+|++|.+++.+|+
T Consensus 170 ~~L~~L~Ls~N~l~~-l-~~l~~~~~~l~~L~~L~Ls~N~i~~~-~-~-l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 170 PELLSLNLSNNRLYR-L-DDMSSIVQKAPNLKILNLSGNELKSE-R-E-LDKIKGL-KLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp TTCCEEECTTSCCCC-C-GGGTTHHHHSTTCCEEECTTSCCCSG-G-G-GGGGTTS-CCSEEECTTSTTGGGCSSHHHHH
T ss_pred CCCCEEECCCCCCCC-C-ccchhHHhhCCCCCEEECCCCccCCc-h-h-hhhcccC-CcceEEccCCcCccccCcchhHH
Confidence 579999999998872 1 01134566899999999999999864 1 1 0114455 999999999999987763
Q ss_pred --ccCCCCCCCEEE
Q 048732 148 --SLGGLSSLKHLS 159 (174)
Q Consensus 148 --~l~~l~~L~~L~ 159 (174)
.+..+++|+.||
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 367789999886
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.26 E-value=3e-07 Score=73.95 Aligned_cols=69 Identities=19% Similarity=0.195 Sum_probs=44.3
Q ss_pred CCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCc----cccccCCCCCCCEEEccCCcccc
Q 048732 99 PFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNS----IFSSLGGLSSLKHLSLGTNELNG 167 (174)
Q Consensus 99 ~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~----~p~~l~~l~~L~~L~Ls~N~l~g 167 (174)
..++|+.|++++|.++..-.......+..+++|++|+|++|.++.. ++..+...++|+.|+|++|.|+.
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 3466777777777765321111111256677888888888887642 34556667788888888888763
No 143
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.19 E-value=1.4e-07 Score=68.49 Aligned_cols=96 Identities=16% Similarity=0.127 Sum_probs=69.8
Q ss_pred CCcEEEEEcCCC-CCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCc----cc
Q 048732 72 TGRVIKLDLAFR-KRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNS----IF 146 (174)
Q Consensus 72 ~~~v~~L~L~~n-~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~----~p 146 (174)
...+++|+|++| .+...........+...++|++|++++|.+...--......+...++|++|+|++|.++.. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 467999999999 7763221112334567789999999999986431111122266778999999999999854 45
Q ss_pred cccCCCCCCCEEEc--cCCcccc
Q 048732 147 SSLGGLSSLKHLSL--GTNELNG 167 (174)
Q Consensus 147 ~~l~~l~~L~~L~L--s~N~l~g 167 (174)
..+...++|++|+| ++|.|+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCH
T ss_pred HHHHhCCCceEEEecCCCCCCCH
Confidence 67788889999999 8899863
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.99 E-value=7.2e-07 Score=74.86 Aligned_cols=66 Identities=15% Similarity=0.081 Sum_probs=49.6
Q ss_pred CCCCCCEEeCcCCccccc-cCcchhhhcCCCCCCCEEeccCCCCCCc-cccccCCCCCCCEEEccCCccccc
Q 048732 99 PFQQLEFLDLSGNNITGC-VQNEGLDRLSSLKNLKFLDLTLNHFNNS-IFSSLGGLSSLKHLSLGTNELNGS 168 (174)
Q Consensus 99 ~l~~L~~L~ls~N~l~g~-~p~~~~~~~~~l~~L~~L~ls~N~l~g~-~p~~l~~l~~L~~L~Ls~N~l~g~ 168 (174)
.+++|+.|++++|.+++. ++.. +..+++|++|++++|.+++. ++..+..+++|++|+|++|+++..
T Consensus 461 ~~~~L~~L~L~~n~l~~~~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 461 YSPNVRWMLLGYVGESDEGLMEF----SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp SCTTCCEEEECSCCSSHHHHHHH----HTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred hCccceEeeccCCCCCHHHHHHH----HhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 467788888888887652 3333 57888999999999988755 444556788899999999988743
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.75 E-value=5.7e-05 Score=59.10 Aligned_cols=78 Identities=15% Similarity=0.201 Sum_probs=65.9
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCC-EEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCC
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLE-FLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGG 151 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~-~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~ 151 (174)
..++.|+|..| +. .+....|..+++|+ .+++.+ .++ .++... |.++++|+.++++.|.++..-+..|.+
T Consensus 250 ~~L~~l~l~~n-i~----~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~a---F~~c~~L~~l~l~~n~i~~I~~~aF~~ 319 (329)
T 3sb4_A 250 KYLLKIKLPHN-LK----TIGQRVFSNCGRLAGTLELPA-SVT-AIEFGA---FMGCDNLRYVLATGDKITTLGDELFGN 319 (329)
T ss_dssp TTCCEEECCTT-CC----EECTTTTTTCTTCCEEEEECT-TCC-EECTTT---TTTCTTEEEEEECSSCCCEECTTTTCT
T ss_pred CCCCEEECCcc-cc----eehHHHhhCChhccEEEEEcc-cce-EEchhh---hhCCccCCEEEeCCCccCccchhhhcC
Confidence 47899999987 66 67788899999999 999998 666 455433 999999999999999999666678999
Q ss_pred CCCCCEEEc
Q 048732 152 LSSLKHLSL 160 (174)
Q Consensus 152 l~~L~~L~L 160 (174)
+++|+.++.
T Consensus 320 ~~~L~~ly~ 328 (329)
T 3sb4_A 320 GVPSKLIYK 328 (329)
T ss_dssp TCCCCEEEC
T ss_pred Ccchhhhcc
Confidence 999999864
No 146
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.75 E-value=7.5e-05 Score=51.12 Aligned_cols=38 Identities=29% Similarity=0.325 Sum_probs=29.0
Q ss_pred CCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCC
Q 048732 101 QQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFN 142 (174)
Q Consensus 101 ~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~ 142 (174)
++|+.|+|++|+|+. +|... |..+++|+.|+|++|.+.
T Consensus 31 ~~l~~L~Ls~N~l~~-l~~~~---f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNNLTA-LPPGL---LDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSCCSS-CCTTT---GGGCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCcCCc-cChhh---hhhccccCEEEecCCCee
Confidence 368888999998884 55443 778888888888888773
No 147
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.72 E-value=1.4e-06 Score=73.14 Aligned_cols=65 Identities=12% Similarity=0.188 Sum_probs=43.7
Q ss_pred CCCCCCEEeCcCCccccc----cCcchhhhcCCCCCCCEEeccCCCCC----CccccccCCCCCCCEEEccCCcccc
Q 048732 99 PFQQLEFLDLSGNNITGC----VQNEGLDRLSSLKNLKFLDLTLNHFN----NSIFSSLGGLSSLKHLSLGTNELNG 167 (174)
Q Consensus 99 ~l~~L~~L~ls~N~l~g~----~p~~~~~~~~~l~~L~~L~ls~N~l~----g~~p~~l~~l~~L~~L~Ls~N~l~g 167 (174)
.+++|++|++++|.+++. ++.. ...+++|++|++++|.++ +.++..+..+++|+.|++++|.+.+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~----~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 234 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHEL----AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE 234 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHH----HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred hCCCCCEEECccccccCcchhHHHHH----HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence 567888888888876544 2222 446777888888887776 2344455667778888888777654
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.70 E-value=1.5e-05 Score=57.56 Aligned_cols=84 Identities=20% Similarity=0.165 Sum_probs=61.7
Q ss_pred CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCc-cccccCcchhhhcCCC----CCCCEEeccCCC-CCCccc
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNN-ITGCVQNEGLDRLSSL----KNLKFLDLTLNH-FNNSIF 146 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~-l~g~~p~~~~~~~~~l----~~L~~L~ls~N~-l~g~~p 146 (174)
-.+++||++++.+....+ ..+..+++|+.|+|+++. ++.. ....+..+ ++|++|+|+++. ++..--
T Consensus 61 ~~L~~LDLs~~~Itd~GL----~~L~~~~~L~~L~L~~C~~ItD~----gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGF----DHMEGLQYVEKIRLCKCHYIEDG----CLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp CCEEEEEEESCCCCGGGG----GGGTTCSCCCEEEEESCTTCCHH----HHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred ceEeEEeCcCCCccHHHH----HHhcCCCCCCEEEeCCCCccCHH----HHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 479999999998763332 336789999999999985 5422 11225554 479999999974 775433
Q ss_pred cccCCCCCCCEEEccCCc
Q 048732 147 SSLGGLSSLKHLSLGTNE 164 (174)
Q Consensus 147 ~~l~~l~~L~~L~Ls~N~ 164 (174)
..+..+++|+.|+|+++.
T Consensus 133 ~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHGGGCTTCCEEEEESCT
T ss_pred HHHhcCCCCCEEECCCCC
Confidence 457789999999999874
No 149
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.60 E-value=5.4e-06 Score=69.44 Aligned_cols=64 Identities=14% Similarity=0.204 Sum_probs=39.1
Q ss_pred CCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCcccc-ccCCCCCCCEEEccCCccc
Q 048732 100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFS-SLGGLSSLKHLSLGTNELN 166 (174)
Q Consensus 100 l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~-~l~~l~~L~~L~Ls~N~l~ 166 (174)
+++|+.|++++|.+++...... ...+++|+.|++++|.+++.... ....+++|+.|++++|+++
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l---~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHV---LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHH---HHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred chhccEeeccCCCCcHHHHHHH---HhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 5667777777776654332220 24567777777777777544333 3445677777777777764
No 150
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.44 E-value=2.1e-05 Score=65.88 Aligned_cols=84 Identities=19% Similarity=0.161 Sum_probs=41.7
Q ss_pred CcEEEEEcCCCCCCCCccccCccccc-CCCCCCEEeCcCC-ccccc-cCcchhhhcCCCCCCCEEeccCCCCCCcccccc
Q 048732 73 GRVIKLDLAFRKRDSAEWYMNASLFT-PFQQLEFLDLSGN-NITGC-VQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSL 149 (174)
Q Consensus 73 ~~v~~L~L~~n~~~~g~~~~~~~~~~-~l~~L~~L~ls~N-~l~g~-~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l 149 (174)
.++++|+|+++.+.... ...+. .+++|+.|++++| .++.. ++.. +..+++|++|++++|.+++..+..+
T Consensus 105 ~~L~~L~L~~~~~~~~~----~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~----~~~~~~L~~L~L~~~~i~~~~~~~l 176 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDC----LELIAKSFKNFKVLVLSSCEGFSTDGLAAI----AATCRNLKELDLRESDVDDVSGHWL 176 (594)
T ss_dssp TTCCEEEEESCBCCHHH----HHHHHHHCTTCCEEEEESCEEEEHHHHHHH----HHHCTTCCEEECTTCEEECCCGGGG
T ss_pred CCCCeEEeeCcEEcHHH----HHHHHHhCCCCcEEeCCCcCCCCHHHHHHH----HHhCCCCCEEeCcCCccCCcchHHH
Confidence 45777777777554111 11122 3556666666666 33321 2221 3355666666666666554333222
Q ss_pred ----CCCCCCCEEEccCCc
Q 048732 150 ----GGLSSLKHLSLGTNE 164 (174)
Q Consensus 150 ----~~l~~L~~L~Ls~N~ 164 (174)
..+++|+.|++++|.
T Consensus 177 ~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp GGSCTTCCCCCEEECTTCC
T ss_pred HHHhhcCCcCcEEEecccC
Confidence 244456666665554
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.26 E-value=3.5e-05 Score=61.74 Aligned_cols=66 Identities=17% Similarity=0.281 Sum_probs=35.4
Q ss_pred CCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCc----cccccCCCCCCCEEEccCCccc
Q 048732 100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNS----IFSSLGGLSSLKHLSLGTNELN 166 (174)
Q Consensus 100 l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~----~p~~l~~l~~L~~L~Ls~N~l~ 166 (174)
+++|+.|++.+|.+....+... .....+++|++|+|+.|.+++. ++..+..+++|+.|+|++|.++
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~l-a~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMF-LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHH-HHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHH-HhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 4556666666555543222110 0012456677777777766543 3333345566777777777654
No 152
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.21 E-value=0.0001 Score=54.09 Aligned_cols=91 Identities=9% Similarity=0.097 Sum_probs=46.8
Q ss_pred CcEEEEEcCCC-CCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCc----ccc
Q 048732 73 GRVIKLDLAFR-KRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNS----IFS 147 (174)
Q Consensus 73 ~~v~~L~L~~n-~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~----~p~ 147 (174)
..+++|+|++| ++.........+.+..=+.|+.|+|++|.+...--......+..-+.|++|+|+.|.|+.. +-+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 46777777764 4432111111223344566777777777765221111112244556677777777777532 223
Q ss_pred ccCCCCCCCEEEccCC
Q 048732 148 SLGGLSSLKHLSLGTN 163 (174)
Q Consensus 148 ~l~~l~~L~~L~Ls~N 163 (174)
.+..-+.|+.|+|++|
T Consensus 121 aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQ 136 (197)
T ss_dssp HTTTTCCCSEEECCCC
T ss_pred HHhhCCceeEEECCCC
Confidence 3444456777777644
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.83 E-value=0.0048 Score=49.83 Aligned_cols=68 Identities=12% Similarity=0.186 Sum_probs=38.8
Q ss_pred cCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCccc
Q 048732 92 MNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELN 166 (174)
Q Consensus 92 ~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~ 166 (174)
+....|..+++|+.+++.. .+. .++... |.++++|+.+++..| ++..-+..|.++ +|+.+++++|.+.
T Consensus 291 I~~~aF~~c~~L~~l~l~~-~i~-~I~~~a---F~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 291 IHPYCLEGCPKLARFEIPE-SIR-ILGQGL---LGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp ECTTTTTTCTTCCEECCCT-TCC-EECTTT---TTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred ECHHHhhCCccCCeEEeCC-ceE-EEhhhh---hcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 3344555556666666552 243 333322 666677777777544 443334567777 7777777777654
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.78 E-value=0.0027 Score=51.26 Aligned_cols=69 Identities=14% Similarity=0.184 Sum_probs=50.3
Q ss_pred ccCcccccCCCCCCEEeCcCCccc----cccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCC
Q 048732 91 YMNASLFTPFQQLEFLDLSGNNIT----GCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTN 163 (174)
Q Consensus 91 ~~~~~~~~~l~~L~~L~ls~N~l~----g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N 163 (174)
.+....|..+++|+.+++.+|.+. ..++... |.++++|+.+++. +.++..-...|.++++|+.++|..|
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a---F~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC---LEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT---TTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHH---hhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence 455667888888999888887664 1244433 8888899999988 4576444557888899999988655
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.56 E-value=0.0005 Score=54.95 Aligned_cols=41 Identities=20% Similarity=0.308 Sum_probs=27.6
Q ss_pred CCCCCCEEeccCCCCCCcccccc---CCCCCCCEEEccCCcccc
Q 048732 127 SLKNLKFLDLTLNHFNNSIFSSL---GGLSSLKHLSLGTNELNG 167 (174)
Q Consensus 127 ~l~~L~~L~ls~N~l~g~~p~~l---~~l~~L~~L~Ls~N~l~g 167 (174)
.+++|++|+|.+|.++...+..+ ..+++|++|+|+.|.+++
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 46778888888777764333322 346778888888887764
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.40 E-value=0.0085 Score=47.82 Aligned_cols=79 Identities=14% Similarity=0.220 Sum_probs=55.3
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~ 153 (174)
.++.+.+..+ +. .+....|..+++|+.+++..+ ++ .++..+ |.++.+|+.+++..| ++..-...|.+++
T Consensus 298 ~L~~i~l~~~-i~----~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~a---F~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 298 SLTEVKLLDS-VK----FIGEEAFESCTSLVSIDLPYL-VE-EIGKRS---FRGCTSLSNINFPLS-LRKIGANAFQGCI 366 (394)
T ss_dssp TCCEEEECTT-CC----EECTTTTTTCTTCCEECCCTT-CC-EECTTT---TTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred cccccccccc-cc----eechhhhcCCCCCCEEEeCCc-cc-EEhHHh---ccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence 4555555443 33 455667888888999988754 44 454433 888999999999876 6634455788999
Q ss_pred CCCEEEccCC
Q 048732 154 SLKHLSLGTN 163 (174)
Q Consensus 154 ~L~~L~Ls~N 163 (174)
+|+.+++..+
T Consensus 367 ~L~~i~lp~~ 376 (394)
T 4fs7_A 367 NLKKVELPKR 376 (394)
T ss_dssp TCCEEEEEGG
T ss_pred CCCEEEECCC
Confidence 9999988765
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.28 E-value=0.0041 Score=42.26 Aligned_cols=37 Identities=16% Similarity=0.139 Sum_probs=24.1
Q ss_pred cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccc
Q 048732 74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNIT 114 (174)
Q Consensus 74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~ 114 (174)
.++.|+|++|++. .+++..|..+++|+.|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~----~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLT----ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCS----SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCC----ccChhhhhhccccCEEEecCCCee
Confidence 4666777776665 455666666666777777766654
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.26 E-value=0.0022 Score=46.16 Aligned_cols=62 Identities=15% Similarity=0.269 Sum_probs=45.8
Q ss_pred CCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCC-CCCccccccCCC----CCCCEEEccCCc-cc
Q 048732 101 QQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNH-FNNSIFSSLGGL----SSLKHLSLGTNE-LN 166 (174)
Q Consensus 101 ~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~-l~g~~p~~l~~l----~~L~~L~Ls~N~-l~ 166 (174)
-+|+.||++++.++..- ...+..+++|+.|+|+++. ++..--..+..+ ++|++|+|+++. +|
T Consensus 61 ~~L~~LDLs~~~Itd~G----L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIG----FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CCEEEEEEESCCCCGGG----GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred ceEeEEeCcCCCccHHH----HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 46999999999876332 2227899999999999985 664433345554 479999999984 65
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.10 E-value=0.0024 Score=46.78 Aligned_cols=71 Identities=13% Similarity=0.136 Sum_probs=50.6
Q ss_pred ccCCCCCCEEeCcCC-ccccccCcchhhhcCCCCCCCEEeccCCCCCCc----cccccCCCCCCCEEEccCCcccc
Q 048732 97 FTPFQQLEFLDLSGN-NITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNS----IFSSLGGLSSLKHLSLGTNELNG 167 (174)
Q Consensus 97 ~~~l~~L~~L~ls~N-~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~----~p~~l~~l~~L~~L~Ls~N~l~g 167 (174)
+.+-+.|++|+|++| .+...--......+..-..|+.|+|++|++... +-..+..-+.|+.|+|+.|.|+.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 445678999999986 664221011123377888999999999999633 33445556889999999999873
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.94 E-value=0.034 Score=44.29 Aligned_cols=67 Identities=13% Similarity=0.266 Sum_probs=44.5
Q ss_pred cCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCc
Q 048732 92 MNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNE 164 (174)
Q Consensus 92 ~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~ 164 (174)
+....|..+.+|+.+++..+ ++ .+...+ |.++.+|+.+.+..+ ++..-...|.++++|+.+++.+|.
T Consensus 302 I~~~aF~~c~~L~~i~lp~~-v~-~I~~~a---F~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 302 LPESVFAGCISLKSIDIPEG-IT-QILDDA---FAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CC-EECTTT---TTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred cCceeecCCCCcCEEEeCCc-cc-EehHhH---hhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 44556677777777777654 33 343333 778888888888654 553334578888888888887764
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.91 E-value=0.016 Score=45.72 Aligned_cols=66 Identities=11% Similarity=0.090 Sum_probs=41.5
Q ss_pred CcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCC
Q 048732 93 NASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTN 163 (174)
Q Consensus 93 ~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N 163 (174)
....|..+++|+.+.+.++.++ .++... |.++.+|+.+++..+ ++.+-..+|.++++|+.+.+..+
T Consensus 278 ~~~aF~~c~~L~~i~l~~~~i~-~I~~~a---F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 278 PYLLCSGCSNLTKVVMDNSAIE-TLEPRV---FMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CTTTTTTCTTCCEEEECCTTCC-EECTTT---TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccccccccccccccccc-eehhhh---hcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 3445667777777777776665 344333 777777887777654 44223346777777777766543
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.83 E-value=0.11 Score=40.92 Aligned_cols=67 Identities=15% Similarity=0.086 Sum_probs=49.3
Q ss_pred cCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCC
Q 048732 92 MNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTN 163 (174)
Q Consensus 92 ~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N 163 (174)
+....|..+..|+.+.+..+ +. .++... |.++.+|+.+++..+.++..-...|.++++|+.+.|..+
T Consensus 254 I~~~aF~~~~~l~~i~l~~~-i~-~i~~~a---F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 254 IGSFLLQNCTALKTLNFYAK-VK-TVPYLL---CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp ECTTTTTTCTTCCEEEECCC-CS-EECTTT---TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred eCccccceeehhcccccccc-ce-eccccc---cccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 44455677777888877654 33 344433 889999999999988888444568999999999999755
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.53 E-value=0.15 Score=40.50 Aligned_cols=66 Identities=15% Similarity=0.286 Sum_probs=47.2
Q ss_pred cCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCC
Q 048732 92 MNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTN 163 (174)
Q Consensus 92 ~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N 163 (174)
+....|.+++.|+.+.+.. .++ .++... |.++.+|+.+++..+ ++.+-...|.++++|+.+.+..+
T Consensus 279 I~~~aF~~c~~L~~i~l~~-~i~-~I~~~a---F~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s 344 (394)
T 4gt6_A 279 IGTGAFMNCPALQDIEFSS-RIT-ELPESV---FAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS 344 (394)
T ss_dssp ECTTTTTTCTTCCEEECCT-TCC-EECTTT---TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT
T ss_pred ecCcccccccccccccCCC-ccc-ccCcee---ecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc
Confidence 4445577778888888853 344 455544 888999999999865 55334567889999999998654
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=91.07 E-value=0.45 Score=37.68 Aligned_cols=64 Identities=19% Similarity=0.219 Sum_probs=46.2
Q ss_pred cccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCC
Q 048732 94 ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTN 163 (174)
Q Consensus 94 ~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N 163 (174)
...|..+.+|+.+.+..+ ++ .++... |.++.+|+.+++..+ ++..-...|.++++|+.+++..|
T Consensus 290 ~~~F~~~~~L~~i~l~~~-i~-~I~~~a---F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 290 EKTFYGCSSLTEVKLLDS-VK-FIGEEA---FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TTTTTTCTTCCEEEECTT-CC-EECTTT---TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred cccccccccccccccccc-cc-eechhh---hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 344666778888887655 43 344433 889999999999754 66333568899999999999766
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=45.73 E-value=42 Score=20.99 Aligned_cols=44 Identities=23% Similarity=0.128 Sum_probs=31.1
Q ss_pred ccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCC
Q 048732 91 YMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLN 139 (174)
Q Consensus 91 ~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N 139 (174)
.+....|..++.|+.+.+..+- + .|.... |.++.+|+.+.+...
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~v-~-~Ig~~a---F~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPNI-G-LLYDGM---FSGCTALEKLILTGE 53 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTTS-S-CCCTTS---STTCTTCCCEEECCS
T ss_pred EecHHHhcCCCCCcEEEcCCch-h-eEcHHH---HhccCCccEEEEcCC
Confidence 3556778889999999887753 2 233322 888999998887653
No 166
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=24.13 E-value=18 Score=15.94 Aligned_cols=9 Identities=44% Similarity=1.438 Sum_probs=7.1
Q ss_pred CCccccceE
Q 048732 59 DCCQWEGVE 67 (174)
Q Consensus 59 ~~C~w~gv~ 67 (174)
..|+|.|..
T Consensus 6 gacswrgle 14 (23)
T 3ox7_P 6 GACSWRGLE 14 (26)
T ss_pred cccccccch
Confidence 469999975
Done!