BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048733
         (887 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
           Intracellular Mla Immune Receptors Defines A Minimal
           Functional Module For Triggering Cell Death
          Length = 115

 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 10/121 (8%)

Query: 4   AAVNFALETLGPLLVEEIRLLGGVRKEVQSIKSELESLRSFLKDADARAAVXXXXXXXXX 63
           AA++  +  LG LL EE +L  GV+K ++ +  ELES  + L        +         
Sbjct: 1   AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESXNAAL------IKIGEVPREQLD 54

Query: 64  SV-RTWVKQLRDEAYRIEDFIDEYALMVAKLPHESG---LVGVLHRISRFIKKLRRRRGV 119
           S  + W  ++R+ +Y IED +D++ + V  +  +       G+  R +  +KK++ + G+
Sbjct: 55  SQDKLWADEVRELSYVIEDVVDKFLVQVDGIKSDDNNNKFKGLXKRTTELLKKVKHKHGI 114

Query: 120 A 120
           A
Sbjct: 115 A 115


>pdb|3F0H|A Chain A, Crystal Structure Of Aminotransferase (Rer070207000802)
           From Eubacterium Rectale At 1.70 A Resolution
          Length = 376

 Score = 36.2 bits (82), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 39/77 (50%)

Query: 100 VGVLHRISRFIKKLRRRRGVAAEIQDIESALADIKRRGESYRFRSIDEPSRSGTRNVIPH 159
           VG+L +I+  +K++++  G  AE+  I S  AD + + +   F  + E   +G  +V P 
Sbjct: 257 VGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLPFELVSESPANGVTSVHPT 316

Query: 160 DSRVRSFFVEDDEVVGI 176
            +     F++  +  GI
Sbjct: 317 TANAYDIFLKLKDEYGI 333


>pdb|3N91|A Chain A, Crystal Structure Of A Structural Genomics, Unknown
           Function (Bacova_03430) From Bacteroides Ovatus At 2.40
           A Resolution
          Length = 323

 Score = 30.4 bits (67), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 9/67 (13%)

Query: 137 GESYRFRSIDEPSRSGT-RNVIPHDSRVRSFFVEDDEVVGI--ESIKDKLIDLMLNGRSK 193
           GE  R R ID  + +GT +++I H+      FVE+DEVV I  +S KD L+ L     S 
Sbjct: 180 GEYLR-RGIDHATVAGTSKDIIRHEQ-----FVENDEVVNISTKSXKDNLLTLKTKDESG 233

Query: 194 RSVVAVV 200
           + +   V
Sbjct: 234 KDISYTV 240


>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
 pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
 pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
 pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
          Length = 727

 Score = 30.0 bits (66), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 8/71 (11%)

Query: 590 VKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIR 649
           + + I  +  +  L L  + +  LP  + NL NL        ++LDL+H  ++ LP E+ 
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNL--------RVLDLSHNRLTSLPAELG 290

Query: 650 NLKKLRSLIVF 660
           +  +L+    F
Sbjct: 291 SCFQLKYFYFF 301


>pdb|3DMY|A Chain A, Crystal Structure Of A Predicated Acyl-Coa Synthetase From
           E.Coli
 pdb|3DMY|B Chain B, Crystal Structure Of A Predicated Acyl-Coa Synthetase From
           E.Coli
          Length = 480

 Score = 29.6 bits (65), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 738 LENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNMKKLPDWILKLKN 788
           LENV  + + ++S    L+LQS S P  H Q+  + G  KKL   + +L+ 
Sbjct: 427 LENVAVINIGLRSFA--LELQSASKPVVHYQWSPVAGGNKKLARLLERLQG 475


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.138    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,594,519
Number of Sequences: 62578
Number of extensions: 987350
Number of successful extensions: 2112
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2106
Number of HSP's gapped (non-prelim): 8
length of query: 887
length of database: 14,973,337
effective HSP length: 107
effective length of query: 780
effective length of database: 8,277,491
effective search space: 6456442980
effective search space used: 6456442980
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)